Query 008393
Match_columns 567
No_of_seqs 1088 out of 2629
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 01:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 3.2E-45 1.1E-49 380.6 42.3 284 279-567 100-408 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 3.2E-44 1.1E-48 363.3 46.0 287 276-567 44-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 8.7E-44 3E-48 357.2 42.6 284 279-567 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 7.1E-43 2.4E-47 355.6 44.8 288 276-567 53-354 (354)
5 1nr0_A Actin interacting prote 100.0 9.3E-43 3.2E-47 380.7 44.6 353 205-567 21-564 (611)
6 3iz6_a 40S ribosomal protein R 100.0 7.4E-44 2.5E-48 366.4 33.3 289 276-567 55-372 (380)
7 1nr0_A Actin interacting prote 100.0 9.2E-43 3.1E-47 380.8 43.2 346 205-567 106-608 (611)
8 2ynn_A Coatomer subunit beta'; 100.0 6.9E-42 2.3E-46 340.6 42.1 282 278-564 4-297 (304)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-41 4.3E-46 345.1 42.2 290 277-567 5-332 (345)
10 1erj_A Transcriptional repress 100.0 3.7E-41 1.3E-45 347.9 43.4 280 285-567 62-386 (393)
11 2ymu_A WD-40 repeat protein; u 100.0 1E-40 3.6E-45 361.5 48.3 342 205-567 224-577 (577)
12 3frx_A Guanine nucleotide-bind 100.0 6E-41 2E-45 336.2 42.7 284 276-567 6-314 (319)
13 4ery_A WD repeat-containing pr 100.0 1.6E-40 5.5E-45 331.5 45.0 286 277-567 13-309 (312)
14 2xzm_R RACK1; ribosome, transl 100.0 1.4E-40 4.7E-45 337.0 41.7 285 276-567 10-337 (343)
15 4gqb_B Methylosome protein 50; 100.0 6.9E-41 2.3E-45 339.2 37.5 277 285-567 28-328 (344)
16 4g56_B MGC81050 protein; prote 100.0 2.7E-41 9.4E-46 344.2 34.0 280 283-567 38-340 (357)
17 2hes_X YDR267CP; beta-propelle 100.0 2.9E-40 1E-44 332.9 40.8 287 277-567 4-325 (330)
18 2ymu_A WD-40 repeat protein; u 100.0 5.2E-39 1.8E-43 348.1 47.8 341 206-567 184-536 (577)
19 3zwl_B Eukaryotic translation 100.0 4.8E-39 1.7E-43 326.9 42.9 283 278-567 23-343 (369)
20 4aow_A Guanine nucleotide-bind 100.0 1.9E-38 6.4E-43 319.4 45.0 285 276-567 27-334 (340)
21 4gqb_B Methylosome protein 50; 100.0 1.3E-39 4.3E-44 329.9 36.2 243 284-532 79-334 (344)
22 1vyh_C Platelet-activating fac 100.0 2.8E-39 9.7E-44 335.7 39.4 245 279-528 142-410 (410)
23 1gxr_A ESG1, transducin-like e 100.0 2E-38 6.8E-43 318.4 44.3 279 282-567 46-334 (337)
24 2ynn_A Coatomer subunit beta'; 100.0 3.1E-38 1.1E-42 314.2 39.6 250 278-530 46-303 (304)
25 1sq9_A Antiviral protein SKI8; 100.0 1E-38 3.5E-43 328.9 37.0 283 278-567 7-392 (397)
26 2pm9_A Protein WEB1, protein t 100.0 6.5E-40 2.2E-44 339.9 27.6 303 261-567 42-411 (416)
27 1r5m_A SIR4-interacting protei 100.0 1.9E-38 6.6E-43 328.8 38.2 277 283-567 104-422 (425)
28 3ow8_A WD repeat-containing pr 100.0 3.5E-38 1.2E-42 316.4 38.2 263 260-528 54-320 (321)
29 3dm0_A Maltose-binding peripla 100.0 7.3E-38 2.5E-42 347.3 42.8 283 278-567 373-690 (694)
30 3vl1_A 26S proteasome regulato 100.0 3.4E-38 1.2E-42 327.7 36.6 275 288-567 98-416 (420)
31 1pgu_A Actin interacting prote 100.0 5E-37 1.7E-41 334.5 46.2 352 203-567 19-611 (615)
32 1k8k_C P40, ARP2/3 complex 41 100.0 8.1E-38 2.8E-42 318.9 37.1 279 283-567 4-358 (372)
33 4g56_B MGC81050 protein; prote 100.0 3.2E-38 1.1E-42 321.5 32.2 244 281-530 88-344 (357)
34 3odt_A Protein DOA1; ubiquitin 100.0 1E-36 3.5E-41 302.8 41.7 278 276-567 7-293 (313)
35 3k26_A Polycomb protein EED; W 100.0 5.6E-38 1.9E-42 318.9 31.2 290 275-567 5-363 (366)
36 3ei3_B DNA damage-binding prot 100.0 4.1E-37 1.4E-41 315.9 38.0 283 277-567 63-379 (383)
37 3i2n_A WD repeat-containing pr 100.0 1.6E-37 5.5E-42 314.6 34.3 286 280-567 11-350 (357)
38 1got_B GT-beta; complex (GTP-b 100.0 1.2E-36 4.2E-41 307.7 40.5 242 279-526 89-340 (340)
39 1r5m_A SIR4-interacting protei 100.0 4.1E-37 1.4E-41 318.9 37.8 280 280-567 38-358 (425)
40 2oaj_A Protein SNI1; WD40 repe 100.0 6.6E-37 2.3E-41 347.4 37.6 348 205-567 20-602 (902)
41 3frx_A Guanine nucleotide-bind 100.0 5E-36 1.7E-40 300.4 38.9 265 260-530 36-318 (319)
42 3gre_A Serine/threonine-protei 100.0 6.8E-37 2.3E-41 320.0 33.3 284 278-567 53-437 (437)
43 2pm7_B Protein transport prote 100.0 1.6E-36 5.4E-41 300.8 34.0 250 281-567 3-282 (297)
44 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-37 1.2E-41 363.4 34.5 353 204-567 659-1155(1249)
45 3dwl_C Actin-related protein 2 100.0 6.5E-38 2.2E-42 320.9 24.2 283 282-567 6-376 (377)
46 3v7d_B Cell division control p 100.0 1.9E-35 6.5E-40 311.6 43.0 280 278-567 112-418 (464)
47 2pbi_B Guanine nucleotide-bind 100.0 1.1E-35 3.8E-40 302.4 39.8 244 279-526 98-354 (354)
48 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-37 4.8E-42 331.1 26.7 302 260-567 179-514 (524)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.1E-36 3.1E-40 301.9 38.3 250 283-533 57-339 (345)
50 1erj_A Transcriptional repress 100.0 1.6E-35 5.4E-40 305.7 40.8 294 204-530 66-390 (393)
51 4ery_A WD repeat-containing pr 100.0 2.9E-35 9.8E-40 293.5 40.2 245 279-528 57-311 (312)
52 3mmy_A MRNA export factor; mRN 100.0 4.5E-36 1.5E-40 304.8 34.9 289 275-566 27-342 (368)
53 3sfz_A APAF-1, apoptotic pepti 100.0 5.3E-36 1.8E-40 353.5 40.6 287 279-567 649-1031(1249)
54 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-36 1.1E-40 341.9 36.4 352 205-567 61-658 (902)
55 2pm9_A Protein WEB1, protein t 100.0 3.7E-37 1.3E-41 319.1 26.3 277 288-567 13-334 (416)
56 1gxr_A ESG1, transducin-like e 100.0 9.3E-36 3.2E-40 298.9 34.9 276 286-567 8-293 (337)
57 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-35 1.1E-39 331.7 42.1 286 278-567 46-383 (814)
58 4aez_A CDC20, WD repeat-contai 100.0 3.9E-35 1.3E-39 303.5 38.6 279 281-567 85-377 (401)
59 4a11_B DNA excision repair pro 100.0 2.9E-35 9.8E-40 303.5 37.4 298 265-567 24-362 (408)
60 3bg1_A Protein SEC13 homolog; 100.0 1.1E-36 3.8E-41 304.7 25.7 250 282-567 8-290 (316)
61 3iz6_a 40S ribosomal protein R 100.0 5.5E-36 1.9E-40 307.7 30.8 250 278-531 99-377 (380)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-34 4.7E-39 303.5 42.0 287 261-567 136-439 (445)
63 2hes_X YDR267CP; beta-propelle 100.0 4.3E-35 1.5E-39 295.1 36.0 266 261-529 31-328 (330)
64 4e54_B DNA damage-binding prot 100.0 4.2E-36 1.5E-40 314.3 29.0 282 279-567 111-427 (435)
65 2xzm_R RACK1; ribosome, transl 100.0 7.3E-35 2.5E-39 294.9 36.9 266 260-530 45-341 (343)
66 4gga_A P55CDC, cell division c 100.0 2.6E-34 8.8E-39 299.3 42.0 268 290-567 108-392 (420)
67 4h5i_A Guanine nucleotide-exch 100.0 5.1E-36 1.8E-40 306.1 28.3 278 287-567 14-340 (365)
68 3v7d_B Cell division control p 100.0 4.7E-34 1.6E-38 300.9 43.8 291 261-566 139-459 (464)
69 3vl1_A 26S proteasome regulato 100.0 7.9E-36 2.7E-40 309.9 29.4 272 289-567 58-362 (420)
70 3mkq_A Coatomer beta'-subunit; 100.0 5.6E-35 1.9E-39 329.6 38.5 285 277-567 3-299 (814)
71 3dw8_B Serine/threonine-protei 100.0 2E-35 6.8E-40 309.3 32.4 276 285-566 26-442 (447)
72 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-35 1.1E-39 295.3 31.6 283 281-567 5-334 (351)
73 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-34 4.1E-39 303.2 36.7 270 279-567 125-411 (435)
74 1yfq_A Cell cycle arrest prote 100.0 3.2E-35 1.1E-39 296.2 30.7 275 280-562 4-315 (342)
75 1pgu_A Actin interacting prote 100.0 1.8E-34 6E-39 314.4 39.0 293 263-567 38-363 (615)
76 4ggc_A P55CDC, cell division c 100.0 7.5E-34 2.6E-38 282.9 39.8 268 290-567 28-312 (318)
77 4gga_A P55CDC, cell division c 100.0 1.1E-33 3.9E-38 294.4 41.8 245 282-533 142-399 (420)
78 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-33 5.9E-38 295.2 42.0 272 278-567 109-388 (445)
79 3jrp_A Fusion protein of prote 100.0 1.3E-34 4.5E-39 295.4 32.0 251 279-567 3-284 (379)
80 3i2n_A WD repeat-containing pr 100.0 8.1E-34 2.8E-38 287.3 31.0 247 285-532 63-356 (357)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-33 3.7E-38 292.6 31.8 276 289-567 36-339 (402)
82 3dm0_A Maltose-binding peripla 100.0 4.8E-33 1.6E-37 308.6 38.9 266 259-529 400-693 (694)
83 4aez_A CDC20, WD repeat-contai 100.0 7.5E-33 2.6E-37 286.3 37.4 264 262-533 111-384 (401)
84 4aow_A Guanine nucleotide-bind 100.0 1.6E-32 5.6E-37 275.9 38.8 268 260-531 57-339 (340)
85 3k26_A Polycomb protein EED; W 100.0 1.1E-33 3.9E-38 287.0 30.4 262 264-529 44-366 (366)
86 1sq9_A Antiviral protein SKI8; 100.0 2.3E-33 7.9E-38 288.8 32.5 265 261-531 33-397 (397)
87 3zwl_B Eukaryotic translation 100.0 6.3E-32 2.1E-36 274.3 41.6 248 278-531 65-348 (369)
88 1k8k_C P40, ARP2/3 complex 41 100.0 7.3E-33 2.5E-37 282.1 33.5 253 278-531 43-363 (372)
89 4ggc_A P55CDC, cell division c 100.0 1.1E-31 3.8E-36 267.2 39.7 242 282-530 62-316 (318)
90 3dwl_C Actin-related protein 2 100.0 1.2E-33 4.2E-38 289.1 24.4 260 266-527 35-377 (377)
91 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-32 1.1E-36 277.0 34.0 275 279-567 11-333 (355)
92 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-31 4E-36 266.2 34.8 258 261-534 36-301 (313)
93 3bws_A Protein LP49; two-domai 100.0 1.5E-31 5.2E-36 278.8 37.3 296 265-567 100-429 (433)
94 4a11_B DNA excision repair pro 100.0 1.5E-31 5.2E-36 275.5 35.5 323 205-567 46-402 (408)
95 4e54_B DNA damage-binding prot 100.0 1.5E-32 5.2E-37 287.3 27.2 247 280-532 157-433 (435)
96 3jro_A Fusion protein of prote 100.0 2E-32 6.7E-37 306.0 27.7 248 281-567 3-282 (753)
97 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-31 1.5E-35 277.5 36.0 270 288-566 5-387 (450)
98 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-31 9.2E-36 277.7 33.6 258 278-548 164-433 (435)
99 4h5i_A Guanine nucleotide-exch 100.0 1.3E-31 4.5E-36 273.4 30.0 240 282-530 68-344 (365)
100 3ei3_B DNA damage-binding prot 100.0 2.3E-31 7.9E-36 273.0 31.6 249 313-567 57-336 (383)
101 2xyi_A Probable histone-bindin 100.0 1.3E-31 4.4E-36 279.8 30.0 249 281-567 122-407 (430)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-31 5.6E-36 276.2 30.5 268 261-533 54-346 (402)
103 2pm7_B Protein transport prote 100.0 4.9E-31 1.7E-35 261.3 32.4 224 279-529 45-285 (297)
104 3gre_A Serine/threonine-protei 100.0 1.5E-32 5.1E-37 287.0 22.6 261 294-567 34-356 (437)
105 2j04_A TAU60, YPL007P, hypothe 100.0 2.8E-32 9.5E-37 284.2 24.2 305 205-559 18-350 (588)
106 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-32 3.7E-37 293.4 21.3 253 297-554 171-458 (524)
107 3lrv_A PRE-mRNA-splicing facto 100.0 4.6E-32 1.6E-36 274.3 23.3 264 293-566 42-329 (343)
108 2j04_A TAU60, YPL007P, hypothe 100.0 7.9E-32 2.7E-36 280.8 24.8 258 286-567 14-294 (588)
109 3dw8_B Serine/threonine-protei 100.0 1.7E-31 6E-36 279.3 27.5 282 205-528 31-445 (447)
110 1l0q_A Surface layer protein; 100.0 3E-29 1E-33 257.7 38.1 260 300-567 3-272 (391)
111 1l0q_A Surface layer protein; 100.0 8.4E-29 2.9E-33 254.4 40.6 266 262-539 10-286 (391)
112 3bg1_A Protein SEC13 homolog; 100.0 1.5E-30 5E-35 260.2 25.6 227 279-528 49-292 (316)
113 4gq1_A NUP37; propeller, trans 100.0 7E-31 2.4E-35 270.9 22.4 263 282-562 84-382 (393)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-29 1.5E-33 262.3 33.9 244 282-528 97-390 (450)
115 1yfq_A Cell cycle arrest prote 100.0 1.6E-29 5.5E-34 254.4 28.1 254 262-526 31-321 (342)
116 3f3f_A Nucleoporin SEH1; struc 100.0 5.3E-29 1.8E-33 249.9 29.2 252 278-533 48-341 (351)
117 3mmy_A MRNA export factor; mRN 100.0 1.2E-28 4.3E-33 249.8 32.1 244 281-533 80-353 (368)
118 2w18_A PALB2, fancn, partner a 100.0 2.4E-28 8.3E-33 239.7 31.6 259 263-567 62-354 (356)
119 3jrp_A Fusion protein of prote 100.0 1.8E-28 6E-33 249.9 31.3 217 278-529 46-287 (379)
120 3vu4_A KMHSV2; beta-propeller 100.0 4.1E-28 1.4E-32 246.6 27.2 243 313-567 3-268 (355)
121 1nir_A Nitrite reductase; hemo 100.0 8.1E-27 2.8E-31 250.0 37.2 298 263-567 158-511 (543)
122 3bws_A Protein LP49; two-domai 100.0 1.5E-26 5.1E-31 241.0 36.8 261 262-529 142-432 (433)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-28 8.9E-33 246.7 19.9 220 337-567 44-289 (343)
124 2xyi_A Probable histone-bindin 100.0 1.2E-26 4.3E-31 242.0 30.4 232 261-530 148-411 (430)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.1E-26 7.2E-31 239.0 30.5 280 263-552 92-410 (415)
126 3jro_A Fusion protein of prote 100.0 1.6E-27 5.3E-32 266.4 22.8 210 278-487 44-288 (753)
127 2w18_A PALB2, fancn, partner a 99.9 6.3E-26 2.2E-30 222.6 27.6 219 279-527 103-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.8E-26 1.7E-30 236.3 25.4 272 287-567 62-384 (415)
129 4gq1_A NUP37; propeller, trans 99.9 1.9E-26 6.4E-31 237.7 20.3 223 260-483 107-388 (393)
130 1nir_A Nitrite reductase; hemo 99.9 1.4E-24 4.8E-29 232.5 33.5 266 294-567 144-455 (543)
131 3vgz_A Uncharacterized protein 99.9 1E-23 3.6E-28 212.8 37.5 267 287-560 40-334 (353)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-24 3.7E-29 243.2 28.7 273 287-567 36-410 (741)
133 3u4y_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 210.0 32.9 272 293-567 3-301 (331)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3.1E-24 1.1E-28 239.5 30.4 264 288-560 109-445 (741)
135 2ojh_A Uncharacterized protein 99.9 3.8E-24 1.3E-28 209.5 26.1 256 260-561 18-293 (297)
136 1ri6_A Putative isomerase YBHE 99.9 3.4E-23 1.2E-27 207.8 31.9 264 301-567 7-305 (343)
137 1k32_A Tricorn protease; prote 99.9 7.2E-24 2.5E-28 245.3 30.7 289 264-567 183-499 (1045)
138 1k32_A Tricorn protease; prote 99.9 2E-23 6.7E-28 241.7 32.6 288 264-567 80-458 (1045)
139 3u4y_A Uncharacterized protein 99.9 1.6E-22 5.3E-27 202.6 33.9 280 264-551 20-326 (331)
140 1ri6_A Putative isomerase YBHE 99.9 1.2E-22 4.1E-27 203.8 32.4 286 263-552 14-335 (343)
141 1pby_B Quinohemoprotein amine 99.9 8.3E-23 2.8E-27 204.4 29.9 260 300-567 2-307 (337)
142 1xfd_A DIP, dipeptidyl aminope 99.9 4.4E-24 1.5E-28 237.4 21.9 271 289-567 18-390 (723)
143 3o4h_A Acylamino-acid-releasin 99.9 3.6E-23 1.2E-27 224.4 27.2 268 287-567 21-312 (582)
144 1xfd_A DIP, dipeptidyl aminope 99.9 3E-23 1E-27 230.8 27.2 268 289-558 62-428 (723)
145 2z3z_A Dipeptidyl aminopeptida 99.9 2E-22 7E-27 223.5 29.7 272 288-567 82-432 (706)
146 3hfq_A Uncharacterized protein 99.9 3.7E-21 1.2E-25 194.2 32.5 257 308-566 15-313 (347)
147 3hfq_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 192.2 32.9 268 263-533 15-323 (347)
148 3pe7_A Oligogalacturonate lyas 99.9 1.2E-21 4E-26 200.8 26.3 285 279-566 22-378 (388)
149 1pby_B Quinohemoprotein amine 99.9 1.6E-21 5.3E-26 195.1 26.5 258 263-533 10-314 (337)
150 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-21 5.5E-26 216.3 28.3 241 283-531 116-437 (706)
151 3scy_A Hypothetical bacterial 99.9 4.9E-20 1.7E-24 187.0 35.9 282 262-548 25-360 (361)
152 1jmx_B Amine dehydrogenase; ox 99.9 6.1E-21 2.1E-25 192.0 28.3 268 292-567 4-322 (349)
153 3vgz_A Uncharacterized protein 99.9 3.6E-20 1.2E-24 186.7 32.5 234 328-567 39-300 (353)
154 3scy_A Hypothetical bacterial 99.9 4.6E-20 1.6E-24 187.2 31.3 263 300-566 14-333 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-20 5.9E-25 195.4 26.1 239 287-527 36-331 (434)
156 1z68_A Fibroblast activation p 99.9 1.1E-21 3.8E-26 218.1 17.9 270 292-567 20-388 (719)
157 1z68_A Fibroblast activation p 99.9 1.3E-20 4.5E-25 209.4 22.2 269 289-567 61-440 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.6E-19 1.9E-23 179.8 28.8 265 301-567 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 8.4E-20 2.9E-24 187.1 20.9 270 290-566 38-378 (396)
160 2ojh_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 173.4 23.9 221 304-567 17-255 (297)
161 2oiz_A Aromatic amine dehydrog 99.8 5.1E-18 1.8E-22 172.3 30.5 276 263-552 30-360 (361)
162 3o4h_A Acylamino-acid-releasin 99.8 2.2E-19 7.6E-24 194.5 21.5 228 328-567 20-273 (582)
163 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.6E-23 194.7 27.0 263 289-559 18-382 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.8E-18 1.3E-22 173.6 28.1 243 286-530 38-342 (365)
165 1jmx_B Amine dehydrogenase; ox 99.8 6.3E-18 2.2E-22 169.8 27.4 258 263-533 20-329 (349)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-18 5.7E-23 180.3 22.2 210 309-530 23-279 (434)
167 2oiz_A Aromatic amine dehydrog 99.8 1.9E-17 6.5E-22 168.1 28.0 262 298-567 14-331 (361)
168 4a5s_A Dipeptidyl peptidase 4 99.8 1.2E-17 4.1E-22 186.1 28.3 262 291-559 65-435 (740)
169 3fvz_A Peptidyl-glycine alpha- 99.8 6.7E-17 2.3E-21 161.9 29.8 238 287-529 23-322 (329)
170 3azo_A Aminopeptidase; POP fam 99.8 1.1E-17 3.9E-22 183.9 25.1 281 281-566 17-363 (662)
171 3pe7_A Oligogalacturonate lyas 99.8 1.6E-17 5.5E-22 169.9 23.3 240 284-529 77-384 (388)
172 2gop_A Trilobed protease; beta 99.8 1.5E-16 5.1E-21 160.1 29.1 251 289-566 16-327 (347)
173 2dg1_A DRP35, lactonase; beta 99.8 1.8E-16 6.3E-21 158.6 28.5 266 288-560 6-300 (333)
174 1q7f_A NHL, brain tumor CG1071 99.8 6.7E-16 2.3E-20 151.0 31.5 237 284-567 26-277 (286)
175 1qks_A Cytochrome CD1 nitrite 99.8 5E-15 1.7E-19 158.3 38.7 297 264-567 177-535 (567)
176 3fvz_A Peptidyl-glycine alpha- 99.7 8.4E-16 2.9E-20 153.9 28.9 232 329-567 23-319 (329)
177 2gop_A Trilobed protease; beta 99.7 1.5E-15 5.3E-20 152.6 28.1 234 288-541 59-342 (347)
178 2z2n_A Virginiamycin B lyase; 99.7 7.8E-14 2.7E-18 136.6 39.4 272 283-564 10-290 (299)
179 3azo_A Aminopeptidase; POP fam 99.7 5.5E-16 1.9E-20 170.4 25.1 251 280-535 60-375 (662)
180 3dsm_A Uncharacterized protein 99.7 5.8E-15 2E-19 147.7 29.1 249 307-567 15-299 (328)
181 2xdw_A Prolyl endopeptidase; a 99.7 2.1E-15 7.3E-20 167.2 28.3 243 285-531 122-416 (710)
182 2dg1_A DRP35, lactonase; beta 99.7 5.9E-14 2E-18 140.2 35.4 243 279-528 36-315 (333)
183 3e5z_A Putative gluconolactona 99.7 1.4E-14 4.9E-19 142.3 28.9 237 320-565 18-282 (296)
184 2mad_H Methylamine dehydrogena 99.7 1.6E-13 5.5E-18 139.4 36.5 266 295-567 28-347 (373)
185 3dsm_A Uncharacterized protein 99.7 4.3E-14 1.5E-18 141.3 31.8 279 261-547 14-319 (328)
186 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.7E-18 147.1 37.6 264 296-567 164-474 (567)
187 3e5z_A Putative gluconolactona 99.7 3.1E-14 1.1E-18 140.0 30.1 241 281-533 21-290 (296)
188 3c5m_A Oligogalacturonate lyas 99.7 1.2E-15 3.9E-20 156.2 20.3 237 312-558 13-301 (396)
189 3sjl_D Methylamine dehydrogena 99.7 1.7E-14 5.9E-19 145.1 27.4 271 293-567 38-360 (386)
190 2bkl_A Prolyl endopeptidase; m 99.7 3.2E-15 1.1E-19 165.3 21.9 245 285-536 118-404 (695)
191 2qc5_A Streptogramin B lactona 99.7 1.1E-12 3.9E-17 128.3 37.6 271 285-566 17-296 (300)
192 1rwi_B Serine/threonine-protei 99.7 3.3E-14 1.1E-18 137.4 25.8 236 289-531 25-266 (270)
193 3no2_A Uncharacterized protein 99.6 1.1E-13 3.9E-18 134.6 29.0 239 297-546 3-272 (276)
194 2xdw_A Prolyl endopeptidase; a 99.6 5.7E-14 1.9E-18 155.7 29.9 266 297-567 81-411 (710)
195 2mad_H Methylamine dehydrogena 99.6 2.1E-12 7.2E-17 131.2 37.1 254 266-535 49-356 (373)
196 1rwi_B Serine/threonine-protei 99.6 7.3E-14 2.5E-18 134.9 24.3 231 331-567 25-261 (270)
197 3sjl_D Methylamine dehydrogena 99.6 2.7E-13 9.3E-18 136.4 28.7 271 266-550 61-384 (386)
198 2bkl_A Prolyl endopeptidase; m 99.6 6.2E-14 2.1E-18 155.0 24.7 264 296-567 76-394 (695)
199 1q7f_A NHL, brain tumor CG1071 99.6 8.5E-13 2.9E-17 128.8 29.4 193 285-484 74-280 (286)
200 3c75_H MADH, methylamine dehyd 99.6 2.4E-13 8.4E-18 139.1 25.3 266 297-567 82-399 (426)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.2E-12 1.1E-16 126.2 31.6 236 286-530 16-300 (314)
202 1yr2_A Prolyl oligopeptidase; 99.6 2.5E-13 8.5E-18 151.2 25.7 244 286-535 161-447 (741)
203 2z2n_A Virginiamycin B lyase; 99.5 1.5E-11 5.2E-16 120.1 32.9 233 326-567 11-252 (299)
204 3no2_A Uncharacterized protein 99.5 1.8E-12 6.2E-17 126.0 25.9 208 340-558 4-231 (276)
205 3hrp_A Uncharacterized protein 99.5 1E-11 3.4E-16 127.9 30.8 230 288-527 131-408 (409)
206 1yr2_A Prolyl oligopeptidase; 99.5 1.2E-12 4.2E-17 145.7 25.1 266 296-567 115-438 (741)
207 2qe8_A Uncharacterized protein 99.5 8.6E-13 3E-17 132.7 21.4 265 278-561 10-312 (343)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.5E-12 1.9E-16 124.5 26.7 233 329-567 17-296 (314)
209 3hrp_A Uncharacterized protein 99.5 1.3E-11 4.5E-16 127.0 30.2 228 330-566 131-406 (409)
210 1xip_A Nucleoporin NUP159; bet 99.5 1.2E-12 4.1E-17 132.2 21.0 173 289-473 39-232 (388)
211 3c75_H MADH, methylamine dehyd 99.5 3.9E-12 1.3E-16 130.2 25.0 255 266-534 101-407 (426)
212 3iuj_A Prolyl endopeptidase; h 99.5 4E-12 1.4E-16 140.3 24.9 243 285-535 126-411 (693)
213 3g4e_A Regucalcin; six bladed 99.5 1.2E-10 4E-15 114.5 31.6 225 326-558 9-260 (297)
214 2qc5_A Streptogramin B lactona 99.5 2.5E-10 8.6E-15 111.4 33.9 232 328-567 18-257 (300)
215 3g4e_A Regucalcin; six bladed 99.5 2.5E-10 8.7E-15 112.0 33.8 226 286-519 11-262 (297)
216 1mda_H Methylamine dehydrogena 99.5 1E-12 3.5E-17 132.4 16.7 263 268-549 50-366 (368)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 9.5E-10 3.3E-14 109.5 34.9 220 290-520 51-293 (326)
218 3dr2_A Exported gluconolactona 99.4 8.7E-11 3E-15 115.8 25.8 231 324-565 39-302 (305)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 6E-10 2E-14 111.0 31.8 218 332-559 51-291 (326)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.2E-10 1.4E-14 114.3 30.1 253 298-567 102-375 (376)
221 3dr2_A Exported gluconolactona 99.4 3.4E-10 1.2E-14 111.6 27.7 232 283-527 40-304 (305)
222 1mda_H Methylamine dehydrogena 99.4 1.4E-11 4.9E-16 124.0 17.8 245 310-567 47-343 (368)
223 2hz6_A Endoplasmic reticulum t 99.3 9.9E-15 3.4E-19 148.4 -7.1 223 298-531 8-238 (369)
224 3hxj_A Pyrrolo-quinoline quino 99.3 2.3E-10 7.9E-15 113.6 22.5 259 286-566 58-320 (330)
225 1kb0_A Quinohemoprotein alcoho 99.3 5.4E-10 1.8E-14 122.5 27.3 261 299-567 77-504 (677)
226 1yiq_A Quinohemoprotein alcoho 99.3 3.1E-10 1.1E-14 124.5 25.4 261 299-567 70-502 (689)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.6E-09 8.8E-14 108.4 28.8 253 299-567 53-334 (376)
228 1npe_A Nidogen, entactin; glyc 99.3 2.9E-08 9.8E-13 95.6 33.8 245 300-552 2-263 (267)
229 2ece_A 462AA long hypothetical 99.2 3.9E-09 1.3E-13 106.8 27.7 217 339-558 93-399 (462)
230 3iuj_A Prolyl endopeptidase; h 99.2 4.5E-10 1.5E-14 123.8 22.7 233 328-567 127-402 (693)
231 2ece_A 462AA long hypothetical 99.2 6.2E-09 2.1E-13 105.4 28.9 221 294-517 88-399 (462)
232 1kb0_A Quinohemoprotein alcoho 99.2 1.3E-09 4.5E-14 119.4 24.9 251 298-556 127-536 (677)
233 1xip_A Nucleoporin NUP159; bet 99.2 2.1E-10 7.1E-15 115.8 16.1 168 374-558 39-232 (388)
234 1yiq_A Quinohemoprotein alcoho 99.2 3.2E-09 1.1E-13 116.6 26.6 251 298-555 120-533 (689)
235 3hxj_A Pyrrolo-quinoline quino 99.2 2.5E-10 8.7E-15 113.3 16.2 255 292-567 24-281 (330)
236 2qe8_A Uncharacterized protein 99.2 1E-09 3.5E-14 110.1 19.3 218 330-567 17-275 (343)
237 1fwx_A Nitrous oxide reductase 99.1 2.3E-09 7.9E-14 112.2 20.7 254 302-559 18-407 (595)
238 2iwa_A Glutamine cyclotransfer 99.1 3.7E-08 1.3E-12 93.8 26.6 203 320-530 10-238 (266)
239 2hz6_A Endoplasmic reticulum t 99.1 4.5E-11 1.6E-15 121.3 5.9 200 340-552 8-216 (369)
240 1kv9_A Type II quinohemoprotei 99.1 2.3E-08 7.8E-13 109.4 26.4 261 299-567 66-485 (668)
241 3nol_A Glutamine cyclotransfer 99.0 4.7E-08 1.6E-12 92.0 22.9 190 320-519 32-245 (262)
242 4a2l_A BT_4663, two-component 99.0 1.3E-06 4.5E-11 97.7 37.9 265 286-566 213-522 (795)
243 1npe_A Nidogen, entactin; glyc 99.0 5.2E-07 1.8E-11 86.7 29.6 219 342-566 2-234 (267)
244 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.3E-12 90.1 24.5 200 277-485 9-238 (266)
245 4a2l_A BT_4663, two-component 99.0 2.2E-06 7.5E-11 95.9 38.4 263 287-566 262-567 (795)
246 2ad6_A Methanol dehydrogenase 99.0 2.7E-07 9.4E-12 98.8 29.0 259 299-567 62-491 (571)
247 3nok_A Glutaminyl cyclase; bet 99.0 1E-07 3.5E-12 89.7 22.5 181 331-519 56-255 (268)
248 1w6s_A Methanol dehydrogenase 99.0 2.9E-07 9.9E-12 98.7 28.4 261 299-567 62-500 (599)
249 3mbr_X Glutamine cyclotransfer 98.9 3.2E-07 1.1E-11 85.6 24.0 191 320-519 10-224 (243)
250 1fwx_A Nitrous oxide reductase 98.9 5.1E-08 1.7E-12 102.2 20.5 232 298-533 100-435 (595)
251 2fp8_A Strictosidine synthase; 98.9 9.8E-07 3.4E-11 87.3 27.7 230 290-530 21-314 (322)
252 2p4o_A Hypothetical protein; p 98.9 2.4E-06 8.1E-11 83.9 30.2 231 319-560 22-278 (306)
253 2fp8_A Strictosidine synthase; 98.9 1.5E-06 5.1E-11 85.9 28.7 228 331-566 20-309 (322)
254 3v9f_A Two-component system se 98.9 4.5E-06 1.5E-10 93.2 35.7 270 287-567 257-565 (781)
255 3nol_A Glutamine cyclotransfer 98.9 2.9E-07 9.9E-12 86.6 21.7 188 277-475 31-245 (262)
256 2p4o_A Hypothetical protein; p 98.8 1.2E-05 4.3E-10 78.7 33.1 233 278-520 23-279 (306)
257 3v64_C Agrin; beta propeller, 98.8 1.3E-05 4.3E-10 80.3 33.6 237 286-531 32-277 (349)
258 1k3i_A Galactose oxidase precu 98.8 9.3E-08 3.2E-12 104.6 19.3 262 292-559 190-530 (656)
259 1ijq_A LDL receptor, low-densi 98.8 3.1E-05 1.1E-09 76.2 35.5 226 301-531 3-240 (316)
260 1kv9_A Type II quinohemoprotei 98.8 6.5E-07 2.2E-11 97.8 25.4 251 299-557 117-519 (668)
261 1flg_A Protein (quinoprotein e 98.8 1.6E-06 5.6E-11 92.9 27.8 260 300-567 69-513 (582)
262 2ad6_A Methanol dehydrogenase 98.8 2.1E-06 7.2E-11 91.9 27.7 250 299-556 115-523 (571)
263 3v9f_A Two-component system se 98.8 1.3E-05 4.6E-10 89.3 34.9 266 287-566 210-520 (781)
264 3v65_B Low-density lipoprotein 98.8 1.6E-05 5.5E-10 80.7 31.5 235 289-532 78-321 (386)
265 3mbr_X Glutamine cyclotransfer 98.7 3.1E-06 1.1E-10 78.9 23.3 189 276-475 8-224 (243)
266 3nok_A Glutaminyl cyclase; bet 98.7 1.5E-06 5.1E-11 81.8 21.2 176 373-558 55-253 (268)
267 1flg_A Protein (quinoprotein e 98.7 3.8E-06 1.3E-10 90.0 25.7 251 299-554 117-543 (582)
268 1w6s_A Methanol dehydrogenase 98.7 5.1E-06 1.8E-10 89.0 26.4 248 302-556 124-533 (599)
269 3p5b_L Low density lipoprotein 98.6 9.9E-05 3.4E-09 75.2 33.6 226 301-531 85-322 (400)
270 2xe4_A Oligopeptidase B; hydro 98.6 2.3E-06 7.8E-11 94.9 22.7 242 285-533 170-462 (751)
271 3qqz_A Putative uncharacterize 98.6 8.8E-05 3E-09 70.0 30.2 199 281-482 20-251 (255)
272 3tc9_A Hypothetical hydrolase; 98.6 1.3E-05 4.5E-10 82.5 26.2 231 331-566 138-426 (430)
273 3sov_A LRP-6, low-density lipo 98.6 7.7E-05 2.6E-09 73.4 30.0 219 308-531 12-240 (318)
274 1ijq_A LDL receptor, low-densi 98.6 0.00026 9E-09 69.5 33.4 216 343-566 3-234 (316)
275 3qqz_A Putative uncharacterize 98.6 3.6E-05 1.2E-09 72.7 25.6 198 367-566 21-249 (255)
276 3v64_C Agrin; beta propeller, 98.6 0.00019 6.4E-09 71.7 32.1 224 334-565 38-270 (349)
277 3v65_B Low-density lipoprotein 98.5 9.6E-05 3.3E-09 74.9 30.1 216 343-565 89-313 (386)
278 2xbg_A YCF48-like protein; pho 98.5 0.00055 1.9E-08 67.5 34.6 263 287-567 35-319 (327)
279 3m0c_C LDL receptor, low-densi 98.5 0.00025 8.5E-09 78.3 33.9 237 290-532 387-635 (791)
280 3tc9_A Hypothetical hydrolase; 98.5 5.8E-05 2E-09 77.7 26.7 233 289-528 138-429 (430)
281 3p5b_L Low density lipoprotein 98.5 0.00039 1.3E-08 70.7 32.0 217 343-566 85-316 (400)
282 3sov_A LRP-6, low-density lipo 98.4 0.00024 8.1E-09 69.9 28.7 218 343-565 6-233 (318)
283 4hw6_A Hypothetical protein, I 98.4 7.4E-05 2.5E-09 76.9 26.0 232 289-528 140-432 (433)
284 4hw6_A Hypothetical protein, I 98.4 0.00014 4.9E-09 74.8 27.7 232 331-566 140-429 (433)
285 2xe4_A Oligopeptidase B; hydro 98.4 2.6E-05 9E-10 86.4 23.6 190 374-566 175-394 (751)
286 3amr_A 3-phytase; beta-propell 98.4 0.00013 4.6E-09 71.4 25.2 183 298-483 39-262 (355)
287 3kya_A Putative phosphatase; s 98.3 0.00024 8.1E-09 73.6 27.0 114 289-403 140-277 (496)
288 3m0c_C LDL receptor, low-densi 98.3 0.0009 3.1E-08 73.9 31.0 202 286-490 422-638 (791)
289 1k3i_A Galactose oxidase precu 98.2 4.8E-05 1.6E-09 83.0 20.2 226 334-560 190-476 (656)
290 3s94_A LRP-6, low-density lipo 98.2 0.0031 1.1E-07 67.9 33.8 274 288-565 84-418 (619)
291 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0024 8.2E-08 68.8 31.6 217 343-565 8-232 (628)
292 3s94_A LRP-6, low-density lipo 98.2 0.0016 5.5E-08 70.1 29.6 221 307-532 16-246 (619)
293 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0092 3.1E-07 64.2 34.7 222 301-531 8-239 (628)
294 1n7d_A LDL receptor, low-densi 98.1 6.2E-06 2.1E-10 90.4 9.7 224 307-534 384-619 (699)
295 2ism_A Putative oxidoreductase 98.1 0.00094 3.2E-08 66.6 24.5 223 288-516 31-332 (352)
296 2ism_A Putative oxidoreductase 98.0 0.002 6.9E-08 64.1 25.8 223 330-558 31-333 (352)
297 3amr_A 3-phytase; beta-propell 98.0 0.0024 8.2E-08 62.6 24.9 188 340-533 39-268 (355)
298 3a9g_A Putative uncharacterize 98.0 0.0054 1.9E-07 61.1 28.0 227 287-516 28-329 (354)
299 3ott_A Two-component system se 98.0 0.026 9E-07 62.3 35.9 262 287-564 62-347 (758)
300 2p9w_A MAL S 1 allergenic prot 98.0 0.0037 1.3E-07 60.7 24.7 193 292-485 17-266 (334)
301 3sre_A PON1, serum paraoxonase 97.9 0.0023 7.7E-08 63.5 23.2 167 349-519 81-287 (355)
302 3a9g_A Putative uncharacterize 97.9 0.0077 2.6E-07 59.9 27.4 223 330-558 29-330 (354)
303 3ott_A Two-component system se 97.9 0.05 1.7E-06 60.0 36.9 266 287-566 145-444 (758)
304 2xzh_A Clathrin heavy chain 1; 97.9 0.022 7.5E-07 54.8 33.9 247 307-563 47-325 (365)
305 2p9w_A MAL S 1 allergenic prot 97.8 0.0087 3E-07 58.1 25.2 203 328-532 11-268 (334)
306 2vpj_A Kelch-like protein 12; 97.8 0.0022 7.4E-08 62.1 21.5 228 298-534 14-283 (301)
307 1bpo_A Protein (clathrin); cla 97.8 0.032 1.1E-06 55.8 33.6 247 307-563 46-324 (494)
308 3ei3_A DNA damage-binding prot 97.8 0.014 4.7E-07 67.3 31.0 271 287-567 553-910 (1158)
309 2xbg_A YCF48-like protein; pho 97.8 0.0079 2.7E-07 59.1 25.4 230 287-527 79-320 (327)
310 1n7d_A LDL receptor, low-densi 97.8 0.0001 3.4E-09 80.8 12.3 196 288-485 406-615 (699)
311 3ii7_A Kelch-like protein 7; p 97.8 0.0057 1.9E-07 59.3 23.1 224 300-533 13-276 (306)
312 2xzh_A Clathrin heavy chain 1; 97.7 0.036 1.2E-06 53.4 33.4 234 292-533 71-336 (365)
313 2g8s_A Glucose/sorbosone dehyd 97.7 0.015 5.1E-07 57.8 25.9 230 330-563 18-347 (353)
314 3sre_A PON1, serum paraoxonase 97.7 0.023 7.8E-07 56.2 26.8 189 291-483 53-297 (355)
315 2g8s_A Glucose/sorbosone dehyd 97.7 0.016 5.5E-07 57.6 26.1 224 288-515 18-339 (353)
316 3das_A Putative oxidoreductase 97.7 0.051 1.7E-06 53.5 28.5 226 328-558 30-326 (347)
317 3kya_A Putative phosphatase; s 97.6 0.0059 2E-07 63.2 21.5 153 374-528 140-340 (496)
318 1bpo_A Protein (clathrin); cla 97.6 0.073 2.5E-06 53.3 33.7 234 292-533 70-335 (494)
319 3s25_A Hypothetical 7-bladed b 97.6 0.039 1.4E-06 53.3 25.8 234 296-558 22-280 (302)
320 2xn4_A Kelch-like protein 2; s 97.5 0.009 3.1E-07 57.7 20.8 225 299-535 16-282 (302)
321 3das_A Putative oxidoreductase 97.5 0.068 2.3E-06 52.6 26.9 232 282-516 26-325 (347)
322 3ei3_A DNA damage-binding prot 97.5 0.24 8.3E-06 57.0 37.2 271 287-566 651-995 (1158)
323 3s25_A Hypothetical 7-bladed b 97.5 0.0084 2.9E-07 58.1 19.7 195 339-557 23-240 (302)
324 3pbp_A Nucleoporin NUP82; beta 97.5 0.0093 3.2E-07 59.6 19.5 132 433-564 40-206 (452)
325 3ii7_A Kelch-like protein 7; p 97.4 0.015 5.2E-07 56.2 20.5 206 343-560 14-257 (306)
326 2vpj_A Kelch-like protein 12; 97.4 0.0072 2.5E-07 58.4 17.7 209 341-561 15-264 (301)
327 1zgk_A Kelch-like ECH-associat 97.3 0.0087 3E-07 58.1 18.0 227 297-535 23-293 (308)
328 4asc_A Kelch repeat and BTB do 97.3 0.037 1.3E-06 53.7 22.0 225 301-535 7-283 (315)
329 3iot_A Maltose-binding protein 97.3 4.6E-05 1.6E-09 79.0 0.3 6 2-7 285-290 (449)
330 2xn4_A Kelch-like protein 2; s 97.2 0.025 8.5E-07 54.5 19.9 209 343-561 18-262 (302)
331 2woz_A Kelch repeat and BTB do 97.1 0.089 3E-06 51.0 22.9 224 301-535 18-293 (318)
332 2uvk_A YJHT; unknown function, 97.1 0.024 8.1E-07 56.2 18.7 227 298-535 19-348 (357)
333 2be1_A Serine/threonine-protei 97.0 0.11 3.7E-06 50.9 21.7 190 342-534 11-236 (339)
334 4asc_A Kelch repeat and BTB do 97.0 0.084 2.9E-06 51.1 21.0 209 343-560 7-253 (315)
335 3sbq_A Nitrous-oxide reductase 96.9 0.24 8.3E-06 51.1 23.5 255 301-558 72-453 (638)
336 2woz_A Kelch repeat and BTB do 96.8 0.11 3.9E-06 50.3 20.1 200 353-560 26-263 (318)
337 1cru_A Protein (soluble quinop 96.8 0.59 2E-05 47.9 28.2 103 330-432 27-163 (454)
338 2uvk_A YJHT; unknown function, 96.7 0.024 8.2E-07 56.2 14.3 217 340-561 19-327 (357)
339 1zgk_A Kelch-like ECH-associat 96.6 0.063 2.1E-06 51.9 16.7 212 340-561 24-273 (308)
340 2be1_A Serine/threonine-protei 96.5 0.01 3.4E-07 58.3 10.2 143 300-444 11-184 (339)
341 1xi4_A Clathrin heavy chain; a 96.5 0.13 4.5E-06 59.1 19.7 217 307-533 46-293 (1630)
342 3pbp_A Nucleoporin NUP82; beta 96.4 0.46 1.6E-05 47.6 21.2 143 380-525 28-208 (452)
343 3b7f_A Glycosyl hydrolase, BNR 96.4 0.87 3E-05 45.5 25.8 254 287-548 54-391 (394)
344 2zwa_A Leucine carboxyl methyl 96.4 0.16 5.5E-06 55.3 19.9 221 339-559 396-674 (695)
345 1tl2_A L10, protein (tachylect 96.1 0.48 1.6E-05 43.0 17.6 170 385-563 4-203 (236)
346 1xi4_A Clathrin heavy chain; a 96.0 0.2 6.9E-06 57.6 18.1 233 293-533 71-335 (1630)
347 1cru_A Protein (soluble quinop 95.6 2.3 7.9E-05 43.4 29.3 104 288-391 27-162 (454)
348 4hvt_A Ritya.17583.B, post-pro 95.5 1.4 4.9E-05 47.8 22.1 238 292-533 133-433 (711)
349 1tl2_A L10, protein (tachylect 95.1 0.096 3.3E-06 47.5 9.3 107 289-403 42-162 (236)
350 3sbq_A Nitrous-oxide reductase 95.1 2.3 7.7E-05 44.1 20.2 184 383-567 141-405 (638)
351 3b7f_A Glycosyl hydrolase, BNR 94.7 3.8 0.00013 40.7 29.0 258 301-564 24-366 (394)
352 2zwa_A Leucine carboxyl methyl 94.6 0.47 1.6E-05 51.6 15.2 149 298-447 451-639 (695)
353 2wg3_C Hedgehog-interacting pr 93.5 7.5 0.00026 39.6 29.7 104 288-391 14-157 (463)
354 3qhy_B Beta-lactamase inhibito 92.0 8.1 0.00028 36.4 17.4 223 308-550 41-264 (282)
355 3q6k_A 43.2 kDa salivary prote 91.9 11 0.00036 37.3 26.9 163 396-558 124-342 (381)
356 3qhy_B Beta-lactamase inhibito 91.7 5.5 0.00019 37.6 15.8 214 331-566 25-242 (282)
357 2wg3_C Hedgehog-interacting pr 89.8 19 0.00064 36.7 29.6 227 330-558 14-354 (463)
358 1sqj_A OXG-RCBH, oligoxylogluc 86.5 42 0.0014 36.7 26.4 145 287-433 14-190 (789)
359 3no0_A DNA gyrase subunit A; D 86.1 22 0.00076 33.2 19.2 207 288-529 24-246 (276)
360 1wp5_A Topoisomerase IV; broke 81.7 38 0.0013 32.5 21.6 69 290-359 41-124 (323)
361 1sqj_A OXG-RCBH, oligoxylogluc 80.5 72 0.0024 34.8 28.2 144 329-474 14-189 (789)
362 3uc1_A DNA gyrase subunit A; D 80.1 43 0.0015 32.1 22.4 260 300-561 4-321 (327)
363 3q6k_A 43.2 kDa salivary prote 71.4 81 0.0028 30.9 24.7 163 310-473 124-342 (381)
364 3mvd_K Regulator of chromosome 67.0 1E+02 0.0035 30.4 32.5 226 331-566 76-370 (423)
365 3kci_A Probable E3 ubiquitin-p 66.7 99 0.0034 30.2 27.3 29 331-359 106-134 (389)
366 4gq2_M Nucleoporin NUP120; bet 65.8 21 0.00071 40.1 9.9 40 287-326 235-274 (950)
367 2cn3_A Xyloglucanase, beta-1,4 65.5 1.5E+02 0.0052 31.9 27.1 104 288-392 23-151 (737)
368 4gq2_M Nucleoporin NUP120; bet 62.3 2E+02 0.0068 32.1 19.7 38 374-412 237-274 (950)
369 1suu_A DNA gyrase subunit A; t 62.2 1.1E+02 0.0037 29.0 26.3 227 297-527 6-281 (312)
370 4hvt_A Ritya.17583.B, post-pro 59.6 1.9E+02 0.0065 31.0 20.2 181 377-563 133-372 (711)
371 3l6v_A GYRA, DNA gyrase subuni 59.0 1.4E+02 0.0047 29.2 24.4 230 296-528 4-315 (370)
372 3zwu_A Alkaline phosphatase PH 58.8 82 0.0028 33.0 12.3 57 416-472 479-548 (592)
373 1go9_A Corticotropin releasing 54.1 11 0.00039 23.3 2.7 11 68-78 1-11 (42)
374 1suu_A DNA gyrase subunit A; t 54.0 1.5E+02 0.005 28.0 27.0 188 339-529 6-231 (312)
375 1zi0_A DNA gyrase subunit A; b 52.6 1.5E+02 0.0052 27.8 24.1 221 339-563 1-270 (307)
376 3no0_A DNA gyrase subunit A; D 51.3 1.5E+02 0.0052 27.4 16.8 115 287-404 67-196 (276)
377 3zwu_A Alkaline phosphatase PH 50.6 47 0.0016 34.8 8.8 58 290-347 478-548 (592)
378 4a9v_A PHOX; hydrolase, beta-p 48.5 63 0.0021 33.7 9.1 61 288-348 476-549 (592)
379 4fhn_B Nucleoporin NUP120; pro 46.0 1.7E+02 0.0057 33.5 13.3 37 375-412 240-276 (1139)
380 3uc1_A DNA gyrase subunit A; D 45.7 2.1E+02 0.007 27.3 22.5 151 289-442 43-227 (327)
381 3mez_B Mannose-specific lectin 45.4 1.1E+02 0.0036 23.9 9.7 26 458-484 59-84 (113)
382 4a9v_A PHOX; hydrolase, beta-p 44.6 77 0.0026 33.0 9.1 60 499-558 476-549 (592)
383 4fhn_B Nucleoporin NUP120; pro 42.5 18 0.00063 41.5 4.6 39 288-326 238-276 (1139)
384 2rmf_A Urocortin, HUCN1; CRF l 42.5 36 0.0012 20.9 3.6 10 69-78 1-10 (40)
385 1zi0_A DNA gyrase subunit A; b 42.0 2.2E+02 0.0077 26.7 25.6 228 298-529 2-277 (307)
386 3f7f_A Nucleoporin NUP120; nuc 41.0 37 0.0013 36.4 6.2 38 288-327 222-259 (729)
387 1zvt_A Topoisomerase IV subuni 38.9 2E+02 0.0068 26.2 10.3 68 498-566 83-159 (256)
388 4h3o_A Lectin; cadmium, plant 37.9 1.3E+02 0.0046 22.9 10.1 26 458-484 53-78 (105)
389 2cn3_A Xyloglucanase, beta-1,4 37.6 4.1E+02 0.014 28.4 26.3 59 331-391 24-91 (737)
390 3a0f_A Xyloglucanase; beta-pro 36.7 4.3E+02 0.015 28.4 26.5 146 328-475 19-202 (763)
391 3mez_A Mannose-specific lectin 36.2 79 0.0027 24.6 6.1 25 458-482 52-76 (111)
392 3f7f_A Nucleoporin NUP120; nuc 35.2 1.4E+02 0.0048 32.0 9.5 35 331-368 223-257 (729)
393 4d9s_A UVB-resistance protein 29.5 4E+02 0.014 25.9 33.2 225 331-566 69-353 (406)
394 3a0f_A Xyloglucanase; beta-pro 27.2 6E+02 0.021 27.2 29.5 147 286-434 19-203 (763)
395 3mez_B Mannose-specific lectin 24.5 2.4E+02 0.0084 21.7 8.8 25 377-404 60-84 (113)
396 3kci_A Probable E3 ubiquitin-p 20.7 5.6E+02 0.019 24.5 25.3 183 341-528 10-240 (389)
397 1q47_A Semaphorin 3A; beta pro 20.1 3.4E+02 0.012 27.5 9.0 66 500-565 405-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-45 Score=380.57 Aligned_cols=284 Identities=26% Similarity=0.500 Sum_probs=266.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+.+|.++|++++|+|++.+|++|+.||.|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|+|||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+ ...+..+.+|...|.+++|+|++.. +++|+.|+.|++||++++.++..+.++ +..+.+++++..+++++.|+.
T Consensus 180 ~~-~~~~~~~~~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 180 QG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CceeEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 87 6788889999999999999999764 559999999999999999999888764 678889999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCC--------------------CCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~--------------------g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
|++||++++++...+.+|...|.+++|+|+ |.+|++++.| .|++||++++ .++..+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEE
Confidence 999999999999999999999999999996 6789999999 9999999876 788899
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 999999999999999999999999999999999988766 7789999999999999999999999999999997
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-44 Score=363.34 Aligned_cols=287 Identities=21% Similarity=0.425 Sum_probs=262.1
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++....+++|.+.|++++|+||+++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 356 WDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 356 wd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|++.+.. .....+.+|...|.++.|.+++. +++++.|+.|++||+++++.+..+.+ .+.+++|+|++..+++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998643 34567889999999999998753 56899999999999999999888764 5788999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec--CCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~--~~~~i~~~~~ 506 (567)
++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|++||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 9999999999999999999999999999999999999999999999 9999999875 44444432 2347999999
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++.+|++++.|+.|++||+.+++.. .+.+|.+.|.+++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999988776 7789999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-44 Score=357.21 Aligned_cols=284 Identities=18% Similarity=0.367 Sum_probs=260.3
Q ss_pred eeeeeccCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCee--eeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~--~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
..+.+++|.+.|++++|+++ +.+|++|+.|++|+||++.+++. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34667899999999999985 67999999999999999987654 4578899999999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|++||+.+ +..+..+..|...+.+++|+|++.. +++++.|+.|++||+++++....+.. .+..++|+|++..+++
T Consensus 104 i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTT-TEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-CCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999998 7778888889999999999999874 55999999999999999988877764 4678999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.| .|++||++++ ..+..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 9999999999999999999999999999999999999999999999 9999999766 67788899999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999877 7789999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.1e-43 Score=355.56 Aligned_cols=288 Identities=18% Similarity=0.351 Sum_probs=258.8
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++....+++|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-----ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEec--CCC
Q 008393 356 WDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP--HLG 425 (567)
Q Consensus 356 wd~~~~~-----~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~--~~~ 425 (567)
|++.... .....+.+|...|.+++|+|++..+ ++++.|++|++||+++++++..+.++ +.++.+.| ++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9986421 3456677899999999999997654 59999999999999999999888754 56777877 467
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--CCceE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKFH 502 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--~~~i~ 502 (567)
.+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ ..+..+..+ ...+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGAS 288 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCccccee
Confidence 89999999999999999999999999999999999999999999999999 9999999875 444444332 34688
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++++|++|+.||.|+||+
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999888766 7789999999999999999999999999999996
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.3e-43 Score=380.74 Aligned_cols=353 Identities=16% Similarity=0.206 Sum_probs=279.3
Q ss_pred cCeEEEecCCCccccC--CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCccc
Q 008393 205 KPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSF 277 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~--~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~~ 277 (567)
...+.|+|||..++.. ..+.+|+..++.....+.. ....|.+. +++++ .+..|+.+++||...+...
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~------h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECC------CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecC------CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 3457899999876653 3458999987754333321 11223333 33433 2445777888887532110
Q ss_pred -------------------------------------------eeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEE
Q 008393 278 -------------------------------------------KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVL 313 (567)
Q Consensus 278 -------------------------------------------~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~v 313 (567)
+....+.+|...|.+++|+|++. +|++|+.|++|++
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 11234678888999999999886 5999999999999
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-------cCCCcEEEEEEcCCCCe
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDD 386 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~~p~~~~ 386 (567)
||..+++...++.+|...|++++|+|++++|++|+.|++|++||+.+ +..+..+. +|.+.|.+++|+|++.
T Consensus 175 wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 252 (611)
T 1nr0_A 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT- 252 (611)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-
T ss_pred EECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-
Confidence 99999999999999999999999999999999999999999999987 55666663 7999999999999986
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEe----------------------------------------------CCeeEEEE
Q 008393 387 LICSCDGDGEIRYWSINNGSCTRVFK----------------------------------------------GGTAQMRF 420 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~~~~~~----------------------------------------------~~~~~~~~ 420 (567)
+|++++.|++|++||+.+++++..+. ..+.+++|
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 45599999999999999887655432 23677899
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEe-cC-----------------------------------------------
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSL-QG----------------------------------------------- 452 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~----------------------------------------------- 452 (567)
+|++..+++++.|+.|++||+.+++....+ .+
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 999999999999999999999876543322 01
Q ss_pred ----------------------------------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 453 ----------------------------------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 453 ----------------------------------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
|...+.+++|+|+|++|++++.| .|++||+..+. ...+.. ..|
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h 490 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVH 490 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EEC
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-eeeeec-cCC
Confidence 23456789999999999999999 99999997642 122333 678
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCC-CcEEE---eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~-~~~~~---~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...|.+++|+|++++|++++.|+.|++||+.+ ++... +..|...|.+++|+|||++||+|+.|++|+|||
T Consensus 491 ~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 89999999999999999999999999999987 54442 234999999999999999999999999999996
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.4e-44 Score=366.44 Aligned_cols=289 Identities=17% Similarity=0.370 Sum_probs=257.2
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.+...+.+++|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--------CCeeEEEEe
Q 008393 356 WDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMRFQ 421 (567)
Q Consensus 356 wd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--------~~~~~~~~~ 421 (567)
||+.+.. .....+.+|.+.|.++.|.|++...+++|+.|+.|++||+.+++.+..+. ..+..+.++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997521 23456789999999999999877777799999999999999999887762 246778887
Q ss_pred c-CCCEEEEEECCCeEEEEECC-CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 422 P-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 422 ~-~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
+ ++..+++++.|+.|++||++ ..+.+..+.+|...|.+++|+|++++|++++.| +|++||++++ ..+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 6 67889999999999999998 457788899999999999999999999999999 9999999876 4555554332
Q ss_pred -------CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee----ccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 499 -------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 499 -------~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+.+++|+|++.+|++++.||.|++||+..++.. .+ .+|.+.|++++|+|+|.+|++|+.||.|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988766 33 5799999999999999999999999999999
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.2e-43 Score=380.78 Aligned_cols=346 Identities=19% Similarity=0.288 Sum_probs=278.6
Q ss_pred cCeEEEecCCCccccCC-------CceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC-----CCCCCCCccceec
Q 008393 205 KPLMMFGTDGAGTLTSP-------SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-----TDPRDAGGRGMDV 271 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~-------~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~-----~~~~d~~~~~~~~ 271 (567)
...+.|+|||..+++.+ .+.+||. ++....+. .....+.+. +.+++ ....|..+++|+.
T Consensus 106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~------gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 106 VKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCC------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred eEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceec------CCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 44689999999887643 3466664 43222211 112223333 33332 2457889999997
Q ss_pred cCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-------ccCccEEEEEECCCCCeE
Q 008393 272 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-------~h~~~V~~i~fsp~~~~l 344 (567)
..+ +....+.+|.+.|.+++|+|||++||+|+.|++|+|||+.+++.+..+. +|...|.+++|+|++++|
T Consensus 178 ~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 178 PPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp TTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred CCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence 554 6778899999999999999999999999999999999999999888884 799999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCce-------------------------------------------eEEeccCCCcEEEEEEc
Q 008393 345 ATSSFDKTVRVWDADNPGYS-------------------------------------------LRTFMGHSASVMSLDFH 381 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~-------------------------------------------~~~~~~h~~~V~~l~~~ 381 (567)
++++.|++|+|||+.+ +.. ...+.+|...|.+++|+
T Consensus 255 ~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 255 ASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence 9999999999999986 322 23456899999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeEEE--------------------------------------------------
Q 008393 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------------------------------- 411 (567)
Q Consensus 382 p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-------------------------------------------------- 411 (567)
|++.. +++++.|+.|++||+.++.+...+
T Consensus 334 pdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 334 ADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp TTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred CCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 99875 559999999999999876543211
Q ss_pred -----------------------------------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE--EEEecCCC
Q 008393 412 -----------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHT 454 (567)
Q Consensus 412 -----------------------------------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~ 454 (567)
...+.+++|+|++..+++++.|+.|++||+.++.. +.. .+|.
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~ 491 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHP 491 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECS
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCC
Confidence 01235688999999999999999999999988653 233 6799
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE--eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
..|++++|+|+|++|++++.| +|++||+.+.. +.+.. +..|...|.+++|+|++++|++++.|++|++||+.++.
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999999999999999999 99999997621 22222 33488999999999999999999999999999998765
Q ss_pred --E-EEeccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 --T-MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 --~-~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. ..+.+| ...|.+++|+|++. |++++.|++|++|+
T Consensus 570 ~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 570 DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 2 356689 89999999999998 99999999999996
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.9e-42 Score=340.63 Aligned_cols=282 Identities=20% Similarity=0.339 Sum_probs=252.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+..+.|++|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEeC---CeeEEEEec-CCCEEEEEEC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG---GTAQMRFQP-HLGRYLAAAA 432 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~---~~~~~~~~~-~~~~l~~~~~ 432 (567)
+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++. ....+.+ .+.+++|+| ++..+++++.
T Consensus 84 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNT-GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCC-CcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 998 677888999999999999999976 55599999999999999874 4455543 578899999 5678999999
Q ss_pred CCeEEEEECCCCeEEEEec-CCCCCeeEEEEcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 433 ENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
|+.|++||+++......+. +|...|..++|++ ++.+|++++.| .|++||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999987 77899999999 9999999876 78899999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC--EEEEEECCCcEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVK 564 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~ 564 (567)
++.+|++++.|+.|++||+.+++.. .+..|...+.+++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999998877 7778999999999999885 688888777543
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=345.08 Aligned_cols=290 Identities=24% Similarity=0.435 Sum_probs=248.8
Q ss_pred ceeeeeeccCCC-CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee---eecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~-~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~---~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+..+..+.+|.+ .|.+++|+|+|++||+|+.|+.|+|||+.+++... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 467788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEEcCCCC-ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeEEEe---CCeeEEEEecCCC
Q 008393 353 VRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFK---GGTAQMRFQPHLG 425 (567)
Q Consensus 353 I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~---~~~~~~---~~~~~~~~~~~~~ 425 (567)
|+|||+.... ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||+.++. ++..+. ..+..++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998643 45678899999999999999976 55699999999999998764 344443 3578899999999
Q ss_pred EEEEEECCCeEEEEECCCCe--EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC------------Cce
Q 008393 426 RYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GEC 490 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~------------~~~ 490 (567)
.+++++.|+.|++||.+++. +...+.+|...|.+++|+|+|++|++++.| .|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 557889999999999999999999999999 999999743221 134
Q ss_pred EEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE--------E--EeccccCCeeEEEEecCC-CEEEEEE
Q 008393 491 VHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--------M--TLTAHEGLIAALAVSTET-GYVASAS 558 (567)
Q Consensus 491 i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--------~--~~~~h~~~V~~l~~spdg-~~l~s~s 558 (567)
+..+.+ |...|.+++|++++..|++++.|+.|++|+...+.. . ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 445554 778899999999999999999999999999875431 1 235899999999999998 5999999
Q ss_pred CCCcEEEcC
Q 008393 559 HDKFVKLWK 567 (567)
Q Consensus 559 ~Dg~I~iWd 567 (567)
.||.|+||+
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 10
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-41 Score=347.90 Aligned_cols=280 Identities=27% Similarity=0.463 Sum_probs=248.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc------------------cEEEEEECCCCCeEEE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------------------LITDVRFSPSMPRLAT 346 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~------------------~V~~i~fsp~~~~l~s 346 (567)
+|.+.|.|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999998888876542 4999999999999999
Q ss_pred EeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEec-C
Q 008393 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQP-H 423 (567)
Q Consensus 347 ~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~-~ 423 (567)
|+.|+.|+|||+.+ +..+..+.+|...|.+++|+|++.. +++++.|+.|++||++++++...+. ..+..++|+| +
T Consensus 141 ~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 99999999999997 7778889999999999999999875 4599999999999999999887765 4678889999 7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEe-------cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------
Q 008393 424 LGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------- 487 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-------- 487 (567)
+..+++++.|+.|++||+++++.+..+ .+|...|.+++|+|+|++|++++.| .|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 888999999999999999999887776 5799999999999999999999999 999999976421
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEec------CCCEEEEEEC
Q 008393 488 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST------ETGYVASASH 559 (567)
Q Consensus 488 -~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp------dg~~l~s~s~ 559 (567)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+|++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 3456678889999999999999999999999999999999998877 7789999999999986 6789999999
Q ss_pred CCcEEEcC
Q 008393 560 DKFVKLWK 567 (567)
Q Consensus 560 Dg~I~iWd 567 (567)
||.|+||+
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-40 Score=361.48 Aligned_cols=342 Identities=26% Similarity=0.470 Sum_probs=286.5
Q ss_pred cCeEEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCcc
Q 008393 205 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
...+.|++||..+++ .+.+++||... +....+. . ....+... +.+++ ....|..+++|+...
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~---~---~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--- 293 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---G---HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--- 293 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEEC---C---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEe---c---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---
Confidence 345889999988766 35569999643 2222211 1 11223332 22222 234567889998643
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+....+.+|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 294 -~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 294 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 46678899999999999999999999999999999999864 5567788999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 433 (567)
|.. +..+..+.+|...|.+++|+|++..+ ++++.|+.|++||. +++.+..+.+ .+..++|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCC--CCEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 965 56778889999999999999998755 58999999999996 4566666553 56789999999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++||.. + +++..+.+|...|++++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCE
Confidence 99999996 567778899999999999999999999999999 99999963 3 678889999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++++.|+.|++||........+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999976555558889999999999999999999999999999998
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-41 Score=336.24 Aligned_cols=284 Identities=22% Similarity=0.407 Sum_probs=246.9
Q ss_pred cceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCC-----CeeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 276 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~-----~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+.....|++|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 345677899999999999999965 8999999999999999863 3457788999999999999999999999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCC--
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL-- 424 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~-- 424 (567)
|++|+|||+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++. .++..+.+ .+..+.+.|..
T Consensus 86 D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 86 DKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC---
T ss_pred CCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCC
Confidence 99999999998 778889999999999999999976 556999999999999975 45555543 46778888853
Q ss_pred ----CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 425 ----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 425 ----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
..+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++.| .|++||+.++ +++..+.. ..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~ 238 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QD 238 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CS
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CC
Confidence 479999999999999999999999999999999999999999999999999 9999999876 66666664 46
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee--------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~--------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.+++|+|++.+|++++. +.+++|++...... .+ ..|...+.+++|+|+|++|++|+.||.|+|||
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 7999999999998777664 56999999877654 22 24567899999999999999999999999996
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-40 Score=331.52 Aligned_cols=286 Identities=24% Similarity=0.454 Sum_probs=257.0
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+.....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 433 (567)
|+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.. .+..+.|++++..+++++.|
T Consensus 93 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSS-GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCC-CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 9998 677888999999999999999976 555999999999999999998888764 57889999999999999999
Q ss_pred CeEEEEECCCCeEEEEec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce---EEEEEeC
Q 008393 434 NVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF---HSCVFHP 508 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i---~~~~~sp 508 (567)
+.|++||+++++.+..+. .+...+..++|+|++++|++++.| .|++||++++ +++..+..+.... ......+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 466789999999999999999999 9999999876 6677777665543 2223346
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEE--CCCcEEEcC
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~I~iWd 567 (567)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999998877 7889999999999999999999997 699999995
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-40 Score=337.04 Aligned_cols=285 Identities=18% Similarity=0.364 Sum_probs=241.6
Q ss_pred cceeeeeeccCCCCeEEEEE-----cC-CCCeEEEEeCCCcEEEEeCCC-------CeeeeeecccCccEEEEEECCCCC
Q 008393 276 SFKEANSVRASTSKVICCHF-----SS-DGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~-----s~-dg~~lasg~~dg~I~vwd~~~-------~~~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
.+.....|++|.+.|++++| ++ |+++|++|+.|++|++||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 345678899999999999999999
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-----EeCCeeE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQ 417 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-----~~~~~~~ 417 (567)
+|++|+.|++|++||+.+ +..+..+.+|...|.+++|+|++..+ ++++.|+.|++||+........ ....+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTTEE-EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCCEE-EEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 999999999999999998 67788899999999999999998754 5999999999999984433222 1235788
Q ss_pred EEEecCC----------CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 418 MRFQPHL----------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 418 ~~~~~~~----------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
++|+|++ ..+++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++.| .|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999886 6899999999999999 4567778899999999999999999999999999 99999995432
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE---Eec-----------cccCCeeEEEEecCCC
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT-----------AHEGLIAALAVSTETG 552 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-----------~h~~~V~~l~~spdg~ 552 (567)
. ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+|+
T Consensus 247 ~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 Y--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp S--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred c--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 2 22222 2456799999999998665 566888999999876533 222 6888999999999999
Q ss_pred EEEEEECCCcEEEcC
Q 008393 553 YVASASHDKFVKLWK 567 (567)
Q Consensus 553 ~l~s~s~Dg~I~iWd 567 (567)
+|++|+.||.|++|+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.9e-41 Score=339.16 Aligned_cols=277 Identities=16% Similarity=0.207 Sum_probs=232.6
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-----------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4677899999999999999887 77788886321 11112223466789999999985 78899999999
Q ss_pred EEEEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-E
Q 008393 354 RVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-R 426 (567)
Q Consensus 354 ~iwd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~ 426 (567)
+|||++++... ...+.+|...|++++|+|+++ +|++|+.|+.|++||+++++++..+.+ .+.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999874332 123458999999999999987 455999999999999999999998875 567889999885 5
Q ss_pred EEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
+++++.|+.|++||+++++....+. .|...+.+++|+| ++++|++|+.| .|++||++++ +++..+.+|...|.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7788899999999999998887775 3566799999999 56789999999 9999999876 67788999999999
Q ss_pred EEEEeCCC-CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEECCCcEEEcC
Q 008393 503 SCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iWd 567 (567)
+++|+|++ ++|++++.|++|+|||+.+++.+.+.+|.+.|++++|+|+++ +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578899999999999999999999999999999999999986 577999999999995
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.7e-41 Score=344.21 Aligned_cols=280 Identities=12% Similarity=0.177 Sum_probs=235.2
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeC------CCcEEEEeCCCCeeee----eecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSKT----NLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~------dg~I~vwd~~~~~~~~----~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
...|...|.+++|+|||++||+|+. |+.|++|+..++.... ...+|...|.+++|+|++ .+++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCE
Confidence 4579999999999999999999997 7789999988765443 345788999999999997 4667888999
Q ss_pred EEEEEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-
Q 008393 353 VRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG- 425 (567)
Q Consensus 353 I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~- 425 (567)
|+|||+.+.... .....+|...|.+++|+|++.. |++|+.|+.|++||+++++++..+.+ .+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999874322 2345589999999999999875 55999999999999999999988865 578889999875
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEe--cCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 426 RYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
.+++++.|+.|++||+++++....+ ..|...+.+++|+|+ +.+|++++.| .|++||++++ +++..+..+...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6788889999999999998776554 346778999999997 5689999999 9999999876 6777888999999
Q ss_pred EEEEEeCCC-CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEec-CCCEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iWd 567 (567)
.+++|+|++ ++|++++.|++|+|||+.+++.+...+|.+.|++|+|+| ++.+|++|+.||.|++|+
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 799999999999999996
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-40 Score=332.87 Aligned_cols=287 Identities=22% Similarity=0.342 Sum_probs=236.9
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeee-cc-cCccEEEEEECCCCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNL-EE-HSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l-~~-h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
++.+..+++|.+.|++++|+++ +||+|+.|++|++||+.++ +....+ .+ |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4567889999999999999988 9999999999999999875 455556 44 9999999999999999999999999
Q ss_pred EEEEEcCCC------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeEEEeC---CeeEEE
Q 008393 353 VRVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG---GTAQMR 419 (567)
Q Consensus 353 I~iwd~~~~------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~----~~~~~~~~---~~~~~~ 419 (567)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||+... +++..+.+ .+.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999532 345677889999999999999976 5569999999999999532 45555554 578899
Q ss_pred EecCCCEEEEEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCC--CCEEEEEeCC-eEEEEeCCCCCCC-----c
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEG-----E 489 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~d-~I~iwd~~~~~~~-----~ 489 (567)
|+|++..+++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++.| +|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678899999999999999998 7799999999 9999999754221 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE--E--EeccccC-CeeEEEEec--CCCEEEEEECCC
Q 008393 490 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--M--TLTAHEG-LIAALAVST--ETGYVASASHDK 561 (567)
Q Consensus 490 ~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~--~~~~h~~-~V~~l~~sp--dg~~l~s~s~Dg 561 (567)
+...+.. |...|.+++|++++ +|++++.|+.|++||..+++. . ...+|.. .|.+++|+| ++++||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 799999999999999987742 2 2357887 899999999 789999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.2e-39 Score=348.13 Aligned_cols=341 Identities=26% Similarity=0.443 Sum_probs=287.1
Q ss_pred CeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCccc
Q 008393 206 PLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSF 277 (567)
Q Consensus 206 ~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~~ 277 (567)
..+.|+++|..+++. +.+++||.. ++....+. . ....+..+ +.+++ ....|..+++|+...
T Consensus 184 ~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~---~---~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---- 252 (577)
T 2ymu_A 184 WGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT---G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---- 252 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEE---C---CSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----
T ss_pred eeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEe---c---CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC----
Confidence 457888898877664 456999964 43322221 1 11223333 33332 234677889998532
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++....+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 567888999999999999999999999999999999996 5677888999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg 434 (567)
+.. ..+..+.+|...|.+++|+|++.. +++++.|+.|++||. +++.+..+.. .+.+++|+|++..+++++.|+
T Consensus 332 ~~~--~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 332 RNG--QHLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TTS--CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCC--CeeEEEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 874 456778899999999999999875 558999999999996 4566666553 578899999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++||+.. +.+..+..|...|.+++|+|++++|
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 9999995 567788899999999999999999999999999 999999742 5778889999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++.|+.|++||........+.+|...|++++|+|++++||+++.||.|+|||
T Consensus 483 as~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 483 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 999999999999976555558889999999999999999999999999999997
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-39 Score=326.86 Aligned_cols=283 Identities=18% Similarity=0.283 Sum_probs=255.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeee-----------EEEe---C--Cee
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCT-----------RVFK---G--GTA 416 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~-----------~~~~---~--~~~ 416 (567)
+.+ +..+..+. +...|.+++|+|++..++ +++.+ +.|++||+...... ..+. + .+.
T Consensus 103 ~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 103 VSN-GQCVATWK-SPVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTT-CCEEEEEE-CSSCEEEEEECTTSSEEE-EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCC-CcEEEEee-cCCCeEEEEEccCCCEEE-EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 998 56666666 889999999999987555 77777 99999999876422 1221 1 678
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCC-CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.++|+|++..+++++.++.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.| .|++||++++ ..+..+
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~ 256 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY 256 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence 899999999999999999999999999 78899999999999999999999999999999 9999999876 455555
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCC--------------eEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEEC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQ--------------SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg--------------~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
. +...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 5 678899999999999999999988 8999999998877 77889999999999999999999999
Q ss_pred CCcEEEcC
Q 008393 560 DKFVKLWK 567 (567)
Q Consensus 560 Dg~I~iWd 567 (567)
||.|+||+
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 99999996
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-38 Score=319.40 Aligned_cols=285 Identities=21% Similarity=0.381 Sum_probs=245.1
Q ss_pred cceeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCC-----eeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 276 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+....+|+||++.|++|+|+|+ +++||+|+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34556789999999999999997 689999999999999998754 356778899999999999999999999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEEEEecCC-
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHL- 424 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~~~- 424 (567)
|+.|++|+... .........+...+..+.+.+++.. +++++.|+.+++||+......... ...+..++|+++.
T Consensus 107 d~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecc-cceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999987 6666777788899999999998765 459999999999999876654432 2356778887765
Q ss_pred -CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 425 -GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 425 -~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.| .|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 456788889999999999999999999999999999999999999999999 9999999876 56666654 46799
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----------EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++.|+|++. +++++.|+.|++||++++..+ ...+|...|++++|+|++++|++|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999875 667778999999999987654 2346889999999999999999999999999996
No 21
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=329.90 Aligned_cols=243 Identities=19% Similarity=0.323 Sum_probs=211.6
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee----ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN----LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~----l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
..|...|.+++|++++ .|++|+.||.|+|||+.+++.... +.+|...|++|+|+|++++|++|+.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3567889999999985 788999999999999998876544 44899999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCC-EEEEEECC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLG-RYLAAAAE 433 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~-~l~~~~~d 433 (567)
+ +..+..+.+|...|.+++|++++..++++|+.|+.|++||+++++....+.. .+.+++|+|+++ .+++++.|
T Consensus 158 ~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 Q-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp T-TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred C-CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 8 7888999999999999999999988888999999999999999988776542 367889999665 56678889
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
+.|++||+++++++..+.+|...|++++|+|++ ++|++++.| +|+|||+.++ + +..+.+|...|.+++|+|++.
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSST
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999998 589999999 9999999875 3 446788999999999999987
Q ss_pred e-EEEEEcCCeEEEEECCCCcE
Q 008393 512 S-LLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 512 ~-l~~~~~dg~I~iwd~~~~~~ 532 (567)
. |++++.|++|++|++.+...
T Consensus 313 ~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TEEEEEETTSCEEEEECCC---
T ss_pred eEEEEEcCCCeEEEEECCCCCC
Confidence 5 55789999999999987543
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-39 Score=335.71 Aligned_cols=245 Identities=24% Similarity=0.489 Sum_probs=226.8
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+++|.+.|.+++|+|++++|++|+.|++|+|||+.+++.+.++.+|...|.+++|+|++.+|++|+.|++|++||+
T Consensus 142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecC------------
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH------------ 423 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~------------ 423 (567)
.+ +.++..+.+|...|.++.|++++. ++++|+.|+.|++||+.++++...+.+ .+.++.|+|+
T Consensus 222 ~~-~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 222 QT-GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp TT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CC-CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 98 778889999999999999999976 566999999999999999998887764 4678889986
Q ss_pred --------CCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 424 --------LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 424 --------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
+..+++++.|+.|++||++++.++..+.+|...|.+++|+|+|++|++++.| .|++||+.++ .++..+
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~ 376 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTL 376 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEE
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEE
Confidence 5679999999999999999999999999999999999999999999999999 9999999766 677888
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
..|...|.+++|+|++.+|++++.|+.|++|+++
T Consensus 377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 8999999999999999999999999999999863
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-38 Score=318.37 Aligned_cols=279 Identities=19% Similarity=0.287 Sum_probs=249.2
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee---eec--ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~---~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+|.+.|.+++|+|++++|++++ ||.|++||+.+++... .+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3347999999999999999999999 9999999998765433 333 789999999999999999999999999999
Q ss_pred EcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 432 (567)
|+.+... ....+..|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.. .+..++|+|++..+++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9987432 45677889999999999998764 55899999999999999998888764 5788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
++.|++||+++++.+..+. +...+.+++|+|++++|++++.+ .|++||++++. ...+..+...+.+++|+|+++
T Consensus 204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC
Confidence 9999999999999887775 77889999999999999999998 99999998752 346778889999999999999
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.|+.|++||+.+++......|...|.+++|+|++++|++++.||.|++||
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 99999999999999999999887778999999999999999999999999999996
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.1e-38 Score=314.18 Aligned_cols=250 Identities=20% Similarity=0.373 Sum_probs=222.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
..+..+..|..+|.+++|++++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||
T Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEec--CCCEEEEEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAA 431 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~--~~~~l~~~~ 431 (567)
+++.......+.+|...|.+++|+|.+..++++|+.|+.|++||+.+......+. ..+..+.|.+ ++..+++++
T Consensus 126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 9985567778899999999999999666678899999999999999887666554 3456777876 667899999
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||+.++ +++..+..+...+.+++|+|++
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTC
T ss_pred CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999 9999999876 6788888899999999999988
Q ss_pred Ce-EEEEEcCCeEEEEECCCC
Q 008393 511 PS-LLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 511 ~~-l~~~~~dg~I~iwd~~~~ 530 (567)
.. +++++.++.+.+|++.+.
T Consensus 283 ~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 283 RKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp GGGCEEEEETTEEEEEECC--
T ss_pred CceEEEEecCCceEEEEeccC
Confidence 53 355566777888887653
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-38 Score=328.94 Aligned_cols=283 Identities=15% Similarity=0.198 Sum_probs=252.3
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe------eeeeecccCccEEEEEECCC----C---CeE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPS----M---PRL 344 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~----~---~~l 344 (567)
.....+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677889999999999999 799999999999999999887 78889999999999999999 9 999
Q ss_pred EEEeCCCcEEEEEcCCCCce-----eEEeccC-----CCcEEEEEEc----CCCCeEEEEEeCCCcEEEEECCC------
Q 008393 345 ATSSFDKTVRVWDADNPGYS-----LRTFMGH-----SASVMSLDFH----PNKDDLICSCDGDGEIRYWSINN------ 404 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~-----~~~~~~h-----~~~V~~l~~~----p~~~~li~s~~~dg~I~iwd~~~------ 404 (567)
++++.||.|++||+.+ ... +..+..| ...|.+++|+ |++..++++++.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999999999999987 444 6778888 5999999999 99876366999999999999998
Q ss_pred CeeeE-----EE----------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC---C---CCCeeEEEEc
Q 008393 405 GSCTR-----VF----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H---TKPIDSVCWD 463 (567)
Q Consensus 405 ~~~~~-----~~----------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h---~~~V~~l~~s 463 (567)
++.+. .+ ...+.+++|+|++ .+++++.++.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66555 55 3467899999999 999999999999999999999999998 9 9999999999
Q ss_pred CCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeec-------------CCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 464 PSGELLASVSED----SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 464 p~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
|++++|++++.| .|++||++++ +.+..+.. |...|.+++|+|++.+|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999876 8999999876 67778887 899999999999999999999999999999
Q ss_pred CCCCcEE-Eec------cc---------------cCCeeEEEEecCC----------CEEEEEECCCcEEEcC
Q 008393 527 MSENKTM-TLT------AH---------------EGLIAALAVSTET----------GYVASASHDKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~-~~~------~h---------------~~~V~~l~~spdg----------~~l~s~s~Dg~I~iWd 567 (567)
+.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9998877 566 67 8999999999998 7999999999999996
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-40 Score=339.86 Aligned_cols=303 Identities=19% Similarity=0.210 Sum_probs=262.6
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC----CeeeeeecccCccEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVR 336 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~ 336 (567)
..|+.+++|+...+...+.+..+ .|...|.+++|+|++++|++|+.||.|++||+.+ .+.+..+.+|...|++++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 45678899998877543344444 5899999999999999999999999999999987 468888999999999999
Q ss_pred ECCC-CCeEEEEeCCCcEEEEEcCCCC------ce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 337 FSPS-MPRLATSSFDKTVRVWDADNPG------YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 337 fsp~-~~~l~s~s~dg~I~iwd~~~~~------~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
|+|+ +.+|++++.||.|++||+.+.. .. +..+..|...|.+++|+|++..++++++.|+.|++||+++++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 8999999999999999998744 21 2234679999999999999767888999999999999999998
Q ss_pred eEEEeC---------CeeEEEEecCC-CEEEEEECCC---eEEEEECCCC-eEEEEec-CCCCCeeEEEEcC-CCCEEEE
Q 008393 408 TRVFKG---------GTAQMRFQPHL-GRYLAAAAEN---VVSILDAETQ-ACRLSLQ-GHTKPIDSVCWDP-SGELLAS 471 (567)
Q Consensus 408 ~~~~~~---------~~~~~~~~~~~-~~l~~~~~dg---~I~i~d~~~~-~~~~~~~-~h~~~V~~l~~sp-~g~~l~s 471 (567)
+..+.. .+.+++|+|++ ..+++++.++ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 887753 47889999997 5788888888 9999999986 6677777 8999999999999 9999999
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcEE-Ee-------------
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TL------------- 535 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~------------- 535 (567)
++.| .|++||++++ +.+..+..|...+.+++|+|++ .+|++++.|+.|++||+.+.... ..
T Consensus 281 ~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 281 SGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 9999 9999999876 7788889999999999999999 89999999999999999876532 11
Q ss_pred ----------------------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 536 ----------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 536 ----------------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..|...+.+++|+|+|++|++++.||.|+||+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 01667888999999999999999999999997
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=328.84 Aligned_cols=277 Identities=16% Similarity=0.234 Sum_probs=249.2
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
..+|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+ +
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~ 181 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS-G 181 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT-T
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC-C
Confidence 345889999999999999999999999999999 67888999999999999999999999999999999999999987 6
Q ss_pred ceeEEeccCCCc---------------EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCC
Q 008393 363 YSLRTFMGHSAS---------------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL 424 (567)
Q Consensus 363 ~~~~~~~~h~~~---------------V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~ 424 (567)
..+..+..+... +.+++|++++ .+++++.|+.|++||+.+++.+..+. ..+..++|+|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 777778777776 9999999874 35688999999999999998887775 457889999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
..+++++.++.|++||+++++.+..+..|...|.+++|+|++ +|++++.| .|++||++++ ..+..+..+...+.+
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFA 335 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEE
Confidence 999999999999999999999999999999999999999999 99999999 9999999776 678888889999999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCc--------------------EE-EeccccC--CeeEEEEecCCCEEEEEECC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEG--LIAALAVSTETGYVASASHD 560 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------------------~~-~~~~h~~--~V~~l~~spdg~~l~s~s~D 560 (567)
++|+|++++|++++.|+.|++||+.++. .+ .+..|.. .|++++|+|++++|++++.|
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL 415 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence 9999999999999999999999998877 44 7778866 99999999999999999999
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
|.|+|||
T Consensus 416 g~i~iw~ 422 (425)
T 1r5m_A 416 QEGSVVA 422 (425)
T ss_dssp SCCEEEE
T ss_pred ceEEEEe
Confidence 9999996
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=316.37 Aligned_cols=263 Identities=19% Similarity=0.309 Sum_probs=242.4
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
++.|+.+++|+...+ .......+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|
T Consensus 54 gs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 54 GSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp EETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred EcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence 456778999998654 2345567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---Cee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTA 416 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~ 416 (567)
++++|++++.||.|++||+++ +.....+..|...|.+++|+|+++ ++++|+.|+.|++||+++++.+..+.+ .+.
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~-~~~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 210 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVES-GKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTT-CSEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCC
T ss_pred CCCEEEEEcCCCcEEEEEcCC-CceeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCcee
Confidence 999999999999999999998 566777888999999999999987 555999999999999999999988875 468
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
+++|+|++..+++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++.| .|++||+.++ .++..+.
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~ 287 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFF 287 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999876 7888999
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.|...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999963
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.3e-38 Score=347.27 Aligned_cols=283 Identities=23% Similarity=0.408 Sum_probs=243.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-----eeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.....+++|++.|+|++|++++ ++|++|+.|++|+||++.+. .....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4455789999999999999875 79999999999999999753 45677899999999999999999999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eCCeeEEEEecCC-
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPHL- 424 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~~~~~~~~~~~~- 424 (567)
+|+|||+.+ +..+..+.+|...|.+++|+|++..+ ++|+.|+.|++||+......... ...+.+++|+|++
T Consensus 453 ~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEE-EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999997 77788899999999999999998755 49999999999998765444332 2347889999986
Q ss_pred -CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 425 -GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 425 -~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
..+++++.|+.|++||++++++...+.+|...|++++|+|++++|++++.| .|++||++++ +++..+.. ...+.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 578999999999999999999999999999999999999999999999999 9999999876 55655543 56799
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eeccc-------------------cCCeeEEEEecCCCEEEEEECCCc
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
+++|+|++.+|+++ .++.|+|||+.++..+ .+..+ ...+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999998866554 5677999999998766 22211 123789999999999999999999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|+||+
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.4e-38 Score=327.69 Aligned_cols=275 Identities=18% Similarity=0.277 Sum_probs=237.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
..+.+..|++++++||+|+.||.|++||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.+ +..+..
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~ 176 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRT 176 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCceE
Confidence 4455568899999999999999999999999999999999999999999999999999999999999999997 667788
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---------------------------CeeEEEE
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------------GTAQMRF 420 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---------------------------~~~~~~~ 420 (567)
+.+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.. .+..++|
T Consensus 177 ~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EECCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EcCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 8999999999999999775 55999999999999999999888763 2233456
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeec-
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSC- 496 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~- 496 (567)
+|++..+++++.|+.|++||+++++.+..+. .|...|.+++|+|++. +|++++.| .|++||++++.. .+..+..
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~ 333 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLIN 333 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEES
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhcc
Confidence 7888899999999999999999998777765 4888999999999999 99999999 999999987632 3455555
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC----------cEEEeccccCCeeEEEEecCCC---EEEEEECCCcE
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----------KTMTLTAHEGLIAALAVSTETG---YVASASHDKFV 563 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~----------~~~~~~~h~~~V~~l~~spdg~---~l~s~s~Dg~I 563 (567)
+...+.++ +.+++.+|++++.|+.|++||+... ....+..|.+.|.+++|+|++. .|++++.+|.+
T Consensus 334 ~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~ 412 (420)
T 3vl1_A 334 EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFC 412 (420)
T ss_dssp TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceE
Confidence 56667776 4557889999999999999998763 2335678899999999999999 78888889999
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
.+|+
T Consensus 413 ~~~~ 416 (420)
T 3vl1_A 413 ALYN 416 (420)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9995
No 31
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-37 Score=334.53 Aligned_cols=352 Identities=13% Similarity=0.183 Sum_probs=270.2
Q ss_pred CCcCeEEEecCCCcccc--CCCceeeeCCCc----chhhcccccccCCCCCCc-eEEe-ecc--CC----CCCCCCCccc
Q 008393 203 TSKPLMMFGTDGAGTLT--SPSNQLWDDKDL----ELRADMDRLVEDGSLDDN-VESF-LSH--DD----TDPRDAGGRG 268 (567)
Q Consensus 203 ~~~~~~~~~~dg~~~~~--~~~~~~Wd~~~g----~~~~~~~~~~~~~~~~~~-v~~~-~~~--~~----~~~~d~~~~~ 268 (567)
.....+.|+|||..++. .+.+.+||..++ +....+.. .... +.+. +.+ ++ ....|+.+++
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~------h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG------HGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT------TTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec------CCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 34556899999987666 345699999987 43333221 1122 3333 333 32 2345778889
Q ss_pred eeccCCc-----cceee--------------------------------------------eeeccCCCCeEEEEEcCCC
Q 008393 269 MDVSQGF-----SFKEA--------------------------------------------NSVRASTSKVICCHFSSDG 299 (567)
Q Consensus 269 ~~~~~~~-----~~~~~--------------------------------------------~~l~~h~~~V~~l~~s~dg 299 (567)
|+..++. ..... ..+.+|...|.+++|+|++
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCC
Confidence 9886431 11222 2344566666666666666
Q ss_pred C-eEEEEeCCCcEEEEeCCCCeeeeeecccCc---cEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCceeEEe-c---c
Q 008393 300 K-LLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF-M---G 370 (567)
Q Consensus 300 ~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~---~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~---~ 370 (567)
+ +|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+ +..+..+ . .
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEP 251 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBC
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccc
Confidence 5 688888899999999999999999999999 9999999999 99999999999999999987 6667777 5 8
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-------eeEE-------------------------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQM------------------------- 418 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-------~~~~------------------------- 418 (567)
|...|.+++|+ ++. ++++++.|+.|++||+++++.+..+..+ ...+
T Consensus 252 ~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 252 VQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred cCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 99999999999 655 5669999999999999987766554322 0011
Q ss_pred -------------------------------------------------EE-----------------------------
Q 008393 419 -------------------------------------------------RF----------------------------- 420 (567)
Q Consensus 419 -------------------------------------------------~~----------------------------- 420 (567)
.|
T Consensus 330 ~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 409 (615)
T 1pgu_A 330 EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 409 (615)
T ss_dssp EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCE
T ss_pred cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCc
Confidence 11
Q ss_pred -----ecC--------------------------------------CCEEEEEEC-CCeEEEEECCCCeEE-EEecCCCC
Q 008393 421 -----QPH--------------------------------------LGRYLAAAA-ENVVSILDAETQACR-LSLQGHTK 455 (567)
Q Consensus 421 -----~~~--------------------------------------~~~l~~~~~-dg~I~i~d~~~~~~~-~~~~~h~~ 455 (567)
+|+ +..+++++. ++.|++||+.+++.. ..+.+|..
T Consensus 410 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 489 (615)
T 1pgu_A 410 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 489 (615)
T ss_dssp EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred eEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccC
Confidence 000 334444555 666666666665554 56677899
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeC----------CCCeEEEEEcCCeEE
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHP----------TYPSLLVIGCYQSLE 523 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp----------~~~~l~~~~~dg~I~ 523 (567)
.|.+++|+|++++|++++.| .|++||+.++ +.+..+.. |...|.+++|+| ++++|++++.|+.|+
T Consensus 490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 490 KPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 99999999999999999999 9999999876 67777777 899999999999 999999999999999
Q ss_pred EEECCCC-cEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 524 LWNMSEN-KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~-~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+||+.++ +.+ .+.+|...|++++|+|+++ |++++.||.|++||
T Consensus 567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999987 444 6789999999999999999 99999999999996
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.1e-38 Score=318.85 Aligned_cols=279 Identities=15% Similarity=0.211 Sum_probs=245.4
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred CCce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eEEE----eCCeeEEEEecCCCEEEEEE
Q 008393 361 PGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVF----KGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 361 ~~~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---~~~~----~~~~~~~~~~~~~~~l~~~~ 431 (567)
+.. ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+ ...+.+++|+|++..+++++
T Consensus 84 -~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 -RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp -TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 432 334467999999999999976 555899999999999998763 3333 34678999999999999999
Q ss_pred CCCeEEEEEC------------------CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 432 AENVVSILDA------------------ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 432 ~dg~I~i~d~------------------~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.| .|++||++++ +.+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~ 238 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVA 238 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeE
Confidence 9999999995 4678899999999999999999999999999999 9999999876 6788
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC--CcE--------------------------------------
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--NKT-------------------------------------- 532 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~--~~~-------------------------------------- 532 (567)
.+..+...+.+++|+|++.+|+++ .|+.|++|++.+ +..
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 888999999999999999877766 999999999987 421
Q ss_pred -EEe-ccccCCeeEEEEe-cCC---CEEEEEECCCcEEEcC
Q 008393 533 -MTL-TAHEGLIAALAVS-TET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 533 -~~~-~~h~~~V~~l~~s-pdg---~~l~s~s~Dg~I~iWd 567 (567)
..+ .+|...|++++|. ++| .+|++|+.||.|+|||
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 4899999999976 666 8999999999999996
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.2e-38 Score=321.54 Aligned_cols=244 Identities=17% Similarity=0.286 Sum_probs=207.0
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee----eecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~----~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
....+|...|++++|+|++.+ ++++.||+|+|||+.+++... ...+|...|++++|+|++++|++|+.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 445679999999999999865 567789999999998876543 344899999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCC-EEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-RYLAA 430 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~l~~~ 430 (567)
|+.+ +..+..+.+|...|.+++|++++..++++++.|+.|++||+++++....+. ..+.+++|+|+++ .++++
T Consensus 167 d~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 167 DLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred ECCC-CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 9998 788889999999999999999988788899999999999999988766543 3467899999865 56677
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++.| +|+|||++++ +++.. .+|...|++++|+|
T Consensus 246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECS
T ss_pred ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeC
Confidence 889999999999999999999999999999999987 589999999 9999999876 44444 47899999999998
Q ss_pred -CCCeEEEEEcCCeEEEEECCCC
Q 008393 509 -TYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 509 -~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
++.+|++++.|+.|++||+...
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 7899999999999999999754
No 34
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=302.77 Aligned_cols=278 Identities=15% Similarity=0.251 Sum_probs=246.8
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++....+++|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 35678899999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEec-CCCEEEE
Q 008393 356 WDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQP-HLGRYLA 429 (567)
Q Consensus 356 wd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~-~~~~l~~ 429 (567)
|++.... ..+..+.+|...|.+++|. ++ ++++++.|+.|++|| .++.+..+. ..+..+.+.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9997632 4567888999999999994 33 666999999999999 566665554 3567788887 8899999
Q ss_pred EECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 430 AAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
++.++.|++|| ..+....+.. |...|.+++|+|++. |++++.| .|++||++++ +.+..+..|...+.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566667777 899999999999998 8888888 9999999876 6788888999999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++ .|++++.|+.|++||+.+++.. .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 6999999999999999999877 6778999999999999998 66799999999996
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-38 Score=318.87 Aligned_cols=290 Identities=17% Similarity=0.305 Sum_probs=247.5
Q ss_pred ccceeeeee-ccCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCeeeeeecc-----cCccEEEEEECCC----
Q 008393 275 FSFKEANSV-RASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPS---- 340 (567)
Q Consensus 275 ~~~~~~~~l-~~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~~~~l~~-----h~~~V~~i~fsp~---- 340 (567)
+.|+....+ .+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+
T Consensus 5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS 84 (366)
T ss_dssp CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC
T ss_pred eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC
Confidence 344554444 489999999999984 45666666778999999998887777764 5578999999998
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE---e---CC
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---K---GG 414 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~---~---~~ 414 (567)
+.+|++|+.||.|++||+.+ +..+..+.+|...|.+++|+|++..++++++.||.|++||+++++.+..+ . ..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp CEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred CCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 66999999999999999997 67788889999999999999943456779999999999999999988887 2 36
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe----------------------------cCCCCCeeEEEEcCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL----------------------------QGHTKPIDSVCWDPSG 466 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~----------------------------~~h~~~V~~l~~sp~g 466 (567)
+.+++|+|++..+++++.|+.|++||+++++....+ ..|...|.+++|+ +
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 788999999999999999999999999987544333 3499999999999 7
Q ss_pred CEEEEEeCC-eEEEEeCCCCCC-----------CceEEEeecCCCceEEEEEeCC--CCeEEEEEcCCeEEEEECCCCcE
Q 008393 467 ELLASVSED-SVRVWTVGSGSE-----------GECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~~~-----------~~~i~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
++|++++.| .|++||+.++.. ...+..+..+...+.+++|+|+ +.+|++++.||.|++||+.+++.
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 799999999 999999987532 2457788889999999999999 99999999999999999998753
Q ss_pred -----EEeccc--cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 -----MTLTAH--EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 -----~~~~~h--~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 256666 79999999999999999999999999996
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.1e-37 Score=315.94 Aligned_cols=283 Identities=14% Similarity=0.251 Sum_probs=236.4
Q ss_pred ceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECC-CCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP-SMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp-~~~~l~s~s~dg~ 352 (567)
+.....+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45677889999999999999999 999999999999999999888777765 6999999999999 7789999999999
Q ss_pred EEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCC-
Q 008393 353 VRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG- 425 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~- 425 (567)
|++||+.+ ..+..+.. |...|.+++|+|++. ++++++.|+.|++||+ +++.+..+. ..+.+++|+|++.
T Consensus 143 i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCC--CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 99999985 34455544 448899999999977 5569999999999999 466666665 4578899999998
Q ss_pred EEEEEECCCeEEEEECCC----CeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEee----
Q 008393 426 RYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELS---- 495 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~---- 495 (567)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++.| .|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999998 6677666 6999999999999 99999999999 99999998875433332111
Q ss_pred cC----------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecc--ccCCeeEEEEecCCCEEEEEECCCc
Q 008393 496 CN----------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 496 ~~----------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.+ ...+..++|+|++.+ +++.|+.|++||+.+++.+ .+.+ |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 11 133445666666665 6678999999999998877 5554 567888889999999999997 999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=314.60 Aligned_cols=286 Identities=16% Similarity=0.205 Sum_probs=241.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCeE-EEEeC---CCcEEEEeCCCCeeeeeec-ccCccEEEEEECCC---CCeEEEEeCCC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLL-ATGGH---DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS---MPRLATSSFDK 351 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~l-asg~~---dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~---~~~l~s~s~dg 351 (567)
...+++|.+.|.+++|+|++..| ++|+. |+.|+|||+.+++...... +|...|.+++|+|+ +.+|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999655 55655 8999999999887765543 79999999999998 69999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEE------cCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEeC-------CeeE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDF------HPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG-------GTAQ 417 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~-------~~~~ 417 (567)
.|++||+.+....+..+.+|...|.+++| ++++. ++++++.|+.|++||+++++ .+..+.. .+..
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 99999999855478889999999999966 56665 56699999999999999987 6666643 4566
Q ss_pred EE----EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC---CCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 418 MR----FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 418 ~~----~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp---~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
+. |++++..+++++.++.|++||+++++.... ..|...|.+++|+| ++.+|++++.| .|++||++++....
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK 248 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence 66 678999999999999999999999987544 55889999999999 99999999999 99999998764433
Q ss_pred eEE--EeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCc--------------------EEEeccccCCeeEEE
Q 008393 490 CVH--ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--------------------TMTLTAHEGLIAALA 546 (567)
Q Consensus 490 ~i~--~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~--------------------~~~~~~h~~~V~~l~ 546 (567)
.+. .+..|...|.+++|+|++. +|++++.||.|++||+..+. ...+..|...|++++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence 332 4458899999999999998 89999999999999997542 236778999999999
Q ss_pred EecCCCEEE-EEECCCcEEEcC
Q 008393 547 VSTETGYVA-SASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~-s~s~Dg~I~iWd 567 (567)
|+|++++|+ +++.||.|+|||
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEE
T ss_pred EcCCCCeEEEEecCCCcEEEEE
Confidence 999999998 899999999996
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-36 Score=307.68 Aligned_cols=242 Identities=23% Similarity=0.428 Sum_probs=219.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+. +....+.+|...|.++.|++++ .|++++.|++|+
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~ 167 (340)
T 1got_B 89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCA 167 (340)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEE
T ss_pred cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEE
Confidence 45567789999999999999999999999999999999865 4566788999999999999877 599999999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 431 (567)
+||+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.+ .+.+++|+|++..+++++
T Consensus 168 ~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 168 LWDIET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp EEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCC-CcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 999998 778889999999999999999976 566999999999999999999888764 578899999999999999
Q ss_pred CCCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 432 AENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.|+.|++||+++++.+..+.. +...|.+++|+|+|++|++++.| .|++||+.++ ..+..+.+|...|.+++|+|
T Consensus 246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECT
T ss_pred CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcC
Confidence 999999999999988777653 33579999999999999999999 9999999776 67888899999999999999
Q ss_pred CCCeEEEEEcCCeEEEEE
Q 008393 509 TYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd 526 (567)
++.+|++++.|+.|+|||
T Consensus 323 dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 323 DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEcCCccEEecC
Confidence 999999999999999997
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-37 Score=318.89 Aligned_cols=280 Identities=18% Similarity=0.279 Sum_probs=246.8
Q ss_pred eeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeC----CCCe------eeeeecc----------cCccEEEEEEC
Q 008393 280 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT----DTLK------SKTNLEE----------HSSLITDVRFS 338 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~----~~~~------~~~~l~~----------h~~~V~~i~fs 338 (567)
......|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++ ....+.. |...|++++|+
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 344456779999999999999 9999999999999999 8887 4555544 68899999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---- 414 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---- 414 (567)
|++++|++++.||.|++||.. +..+..+.+|...|.+++|+|++.. +++++.|+.|++||+.+++.+..+...
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 999999999999999999943 6678888999999999999999775 458899999999999999988877542
Q ss_pred --------------eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 008393 415 --------------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 479 (567)
Q Consensus 415 --------------~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~i 479 (567)
+..+.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.| .|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp -----------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 667788887 779999999999999999999998999999999999999999999999999 9999
Q ss_pred EeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEE
Q 008393 480 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
||++++ ..+..+..+...+.+++|+|++ +|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++
T Consensus 274 ~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 274 WHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp ECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred EECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 999876 5666777889999999999999 9999999999999999998877 6778999999999999999999999
Q ss_pred CCCcEEEcC
Q 008393 559 HDKFVKLWK 567 (567)
Q Consensus 559 ~Dg~I~iWd 567 (567)
.||.|+|||
T Consensus 350 ~dg~i~i~~ 358 (425)
T 1r5m_A 350 MDGQVNVYD 358 (425)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 40
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-37 Score=347.37 Aligned_cols=348 Identities=13% Similarity=0.132 Sum_probs=258.7
Q ss_pred cCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC---CCCCCCCccceeccCCccc
Q 008393 205 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFSF 277 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~---~~~~d~~~~~~~~~~~~~~ 277 (567)
...++|+|+|..+++. +.+++||..+++....... ...|... +.++. ....|..+++|++.++.
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~-------~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~-- 90 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLED-------RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK-- 90 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSS-------CCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCC-------CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--
Confidence 4578999999987764 4679999887654322211 1123333 22211 23467889999998874
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-----------eeecccCccEEEEEECCC-CCeEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----------TNLEEHSSLITDVRFSPS-MPRLA 345 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-----------~~l~~h~~~V~~i~fsp~-~~~l~ 345 (567)
.+..+. |.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|...|++++|+|+ +..|+
T Consensus 91 -~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 91 -VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp -EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred -EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 444454 7789999999999999999999999999999988764 345679999999999996 46899
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeccC------------------CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 346 TSSFDKTVRVWDADNPGYSLRTFMGH------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 346 s~s~dg~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
+|+.||.| +||+.+ +..+..+..| ...|.+++|+|++. +|++++.||.|++||++++++
T Consensus 169 ~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred EEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE
Confidence 99999999 999997 6667777655 57899999999976 556999999999999998877
Q ss_pred eEE--E-------------------eCCeeEEEEec----CCCE------------------------------------
Q 008393 408 TRV--F-------------------KGGTAQMRFQP----HLGR------------------------------------ 426 (567)
Q Consensus 408 ~~~--~-------------------~~~~~~~~~~~----~~~~------------------------------------ 426 (567)
+.. + ...+..++|++ ++..
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 643 1 11345566642 2222
Q ss_pred -----------------------------------------EEEEECCCeEEEEECCCCeEEEE----------------
Q 008393 427 -----------------------------------------YLAAAAENVVSILDAETQACRLS---------------- 449 (567)
Q Consensus 427 -----------------------------------------l~~~~~dg~I~i~d~~~~~~~~~---------------- 449 (567)
+++++.|+.|++||+.++.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 22333345556666544432211
Q ss_pred -------------------------ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc-eEEE--ee-----
Q 008393 450 -------------------------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE-CVHE--LS----- 495 (567)
Q Consensus 450 -------------------------~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~-~i~~--~~----- 495 (567)
+.+|...+.+++|+|++++|++|+.| +|++||+.++.... .+.. +.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 12333444455667899999999999 99999998773211 1111 11
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--------------------------------------------
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------------------------------------------- 531 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------------------------------------------- 531 (567)
+|...|.+++|+|++++|++++.|++|+|||+.+++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 678899999999999999999999999999998662
Q ss_pred --EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 --TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 --~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...+.+|.+.|++|+|+||| +||+|+.|++|+|||
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 23667899999999999999 999999999999997
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5e-36 Score=300.37 Aligned_cols=265 Identities=18% Similarity=0.289 Sum_probs=232.3
Q ss_pred CCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
.+.|+.+++|+...... -..+..+++|...|.+++|+++|++|++|+.|++|+|||+.+++.+..+.+|...|.+++|
T Consensus 36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~ 115 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115 (319)
T ss_dssp EETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred ecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEE
Confidence 34677889998864321 2356789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC-----CeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-----~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
+|++.+|++|+.|++|++||+. +..+..+.+|...|.+++|.|.. ..++++++.|+.|++||+++.+....+.
T Consensus 116 ~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 116 DKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp CTTSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence 9999999999999999999997 45678889999999999999863 2367799999999999999998887775
Q ss_pred C---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 413 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 413 ~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+ .+.+++|+|++..+++++.|+.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.+.+++|++... .
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~ 269 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---Y 269 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTE---E
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---e
Confidence 4 5788999999999999999999999999999999888854 6899999999999999998889999999754 3
Q ss_pred eEEEee--------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 490 CVHELS--------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 490 ~i~~~~--------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 344333 23567899999999999999999999999998654
No 42
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-37 Score=320.05 Aligned_cols=284 Identities=13% Similarity=0.230 Sum_probs=235.7
Q ss_pred eeeeee-ccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCC---Ce---eeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 278 KEANSV-RASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT---LK---SKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 278 ~~~~~l-~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~---~~---~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
+.+..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 567777 89999999999999 999999999999999999876 33 22333 59999999999999999999999
Q ss_pred CCcEEEEEcC--CCCceeEEecc------------CCCcEEEEE--EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 350 DKTVRVWDAD--NPGYSLRTFMG------------HSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 350 dg~I~iwd~~--~~~~~~~~~~~------------h~~~V~~l~--~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
||.|++||++ ..+..+..+.+ +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999999995 11333333322 455666666 44565 4667999999999999999999888764
Q ss_pred -----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcC----CCCEEEEEeCC-eEEEEeC
Q 008393 414 -----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP----SGELLASVSED-SVRVWTV 482 (567)
Q Consensus 414 -----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp----~g~~l~s~s~d-~I~iwd~ 482 (567)
.+.+++|+|++..+++++.|+.|++||+++++++..+. .|...|.+++|+| ++.+|++++.| .|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 57889999999999999999999999999999999886 7888999996664 67899999999 9999999
Q ss_pred CCCCCCceEEEeec--------------------------CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee
Q 008393 483 GSGSEGECVHELSC--------------------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL 535 (567)
Q Consensus 483 ~~~~~~~~i~~~~~--------------------------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~ 535 (567)
+++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 876 45544443 44558889999 7789999999999999999987644 23
Q ss_pred cc-------------------------------------ccCCeeEEEEecC--CCEEEEEECCCcEEEcC
Q 008393 536 TA-------------------------------------HEGLIAALAVSTE--TGYVASASHDKFVKLWK 567 (567)
Q Consensus 536 ~~-------------------------------------h~~~V~~l~~spd--g~~l~s~s~Dg~I~iWd 567 (567)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22 8999999999998 78999999999999996
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-36 Score=300.82 Aligned_cols=250 Identities=19% Similarity=0.314 Sum_probs=210.7
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC--CeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~--~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iw 356 (567)
..+.+|.+.|.+++|+++|++||+|+.|++|+|||+.+ .+.+.++.+|...|++++|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 4678899999999999999864 8899999999999999
Q ss_pred EcCCCC-ceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 357 DADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 357 d~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
|+.+.. ..+..+.+|...|.+++|+|+. ..++++++.|+.|++||++++....
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------- 137 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------- 137 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-------------------------
Confidence 998743 3556778899999999999972 3466699999999999987642110
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCC-------------CCEEEEEeCC-eEEEEeCCCCCC-CceEEEeecCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GELLASVSED-SVRVWTVGSGSE-GECVHELSCNGN 499 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-------------g~~l~s~s~d-~I~iwd~~~~~~-~~~i~~~~~~~~ 499 (567)
...+.+|...|.+++|+|+ +++|++++.| .|++||++++.. ...+..+.+|..
T Consensus 138 ------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 138 ------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp ------------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred ------------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 0134567788888888886 5799999999 999999987532 225677889999
Q ss_pred ceEEEEEeCCC---CeEEEEEcCCeEEEEECCCCc----EEEe--ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTY---PSLLVIGCYQSLELWNMSENK----TMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~----~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|.+++|+|++ .+|++++.|++|+|||+.+.. ...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 99999999985 789999999999999998743 1222 57888999999999999999999999999995
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-37 Score=363.44 Aligned_cols=353 Identities=20% Similarity=0.355 Sum_probs=292.6
Q ss_pred CcCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccC-C-----CCCCCCCccceeccC
Q 008393 204 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHD-D-----TDPRDAGGRGMDVSQ 273 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~-~-----~~~~d~~~~~~~~~~ 273 (567)
....+.|+|||..+++. +.+++||..+++....+... ...+.+. +.++ . .+..|+.+++|+..+
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 34568999999987774 45699999998665444321 1123332 2222 1 345678899999988
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee----------------------------
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---------------------------- 325 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l---------------------------- 325 (567)
+ +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++....+
T Consensus 733 ~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 733 K---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp S---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred c---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence 7 567788899999999999999999999999999999998766543332
Q ss_pred ---------------------------cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 326 ---------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 326 ---------------------------~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
.+|...|.+++|+|++.++++++.||.|++||+.+ +..+..+.+|...|.++
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEE
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEE
Confidence 16788899999999999999999999999999998 77888999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCC----------------------------------------eeeEEEeCCeeEE
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNG----------------------------------------SCTRVFKGGTAQM 418 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~----------------------------------------~~~~~~~~~~~~~ 418 (567)
+|+|++.. +++++.|+.|++||+.+. .........+.++
T Consensus 889 ~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 967 (1249)
T 3sfz_A 889 MFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC 967 (1249)
T ss_dssp EECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEE
T ss_pred EECCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEE
Confidence 99999875 559999999999997531 1111122356788
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-----------
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----------- 486 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----------- 486 (567)
+|+|++..+++++.+|.|.+||+.+++....+.+|...|.+++|+|+|++|++++.| .|++||+.++.
T Consensus 968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v 1047 (1249)
T 3sfz_A 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV 1047 (1249)
T ss_dssp EECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCE
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcE
Confidence 999999999999999999999999999999999999999999999999999999998 99999987541
Q ss_pred --------------------------CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 487 --------------------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 487 --------------------------~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
....+..+..|...+.+++|+|++++|++++.|+.|++||+.++... .+.+|.
T Consensus 1048 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~ 1127 (1249)
T 3sfz_A 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN 1127 (1249)
T ss_dssp EEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCS
T ss_pred EEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCC
Confidence 11233455667888999999999999999999999999999988766 778899
Q ss_pred CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 540 GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.|++++|+|++++|++|+.||.|+|||
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999999999999999999999999996
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-38 Score=320.88 Aligned_cols=283 Identities=18% Similarity=0.230 Sum_probs=229.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.++.|.++|++++|+|+|++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557889999999999999999999999999999988 7888999999999999999999999999999999999998
Q ss_pred CCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeEEEe----CCeeEEEEecCCCEEEEE
Q 008393 360 NPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFK----GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 360 ~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~---~~~~~~----~~~~~~~~~~~~~~l~~~ 430 (567)
+.. .....+.+|...|.+++|+|++.. +++++.|+.|++||+++++ ....+. ..+.+++|+|++..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 743 256677889999999999999765 4589999999999999886 355554 357899999999999999
Q ss_pred ECCCeEEEEECC------------------CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC-ce
Q 008393 431 AAENVVSILDAE------------------TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-EC 490 (567)
Q Consensus 431 ~~dg~I~i~d~~------------------~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~-~~ 490 (567)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++.| .|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 45667777 899999999999999999999999 9999999887431 22
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE-------------------------------------E
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------------------------------------M 533 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~-------------------------------------~ 533 (567)
+..+..|...+.+++|+|++.+|++++.++.+ +|+...... .
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655555 776652110 0
Q ss_pred ----------------EeccccCCeeEEEEecCC-C---EEEEEECCCcEEEcC
Q 008393 534 ----------------TLTAHEGLIAALAVSTET-G---YVASASHDKFVKLWK 567 (567)
Q Consensus 534 ----------------~~~~h~~~V~~l~~spdg-~---~l~s~s~Dg~I~iWd 567 (567)
....|.+.|+++++.+.. . .|+|||.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 001399999999976544 3 699999999999997
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-35 Score=311.56 Aligned_cols=280 Identities=21% Similarity=0.345 Sum_probs=248.2
Q ss_pred eeeeeeccCCCCe-EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 278 KEANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 278 ~~~~~l~~h~~~V-~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
.....+++|...| .|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3556889999885 56666 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeee-----------------------EEEe
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCT-----------------------RVFK 412 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~I~iwd~~~~~~~-----------------------~~~~ 412 (567)
|+++ +..+..+.+|...|.+++|++. ...++++++.|+.|++||+.++... ..+.
T Consensus 189 d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCC-CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9998 7788899999999999999852 2457779999999999999987633 2333
Q ss_pred CC-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 413 GG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 413 ~~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
++ ....++++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|++||++++ ++
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~ 344 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 344 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EE
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cE
Confidence 32 2344567889999999999999999999999999999999999999999999999999999 9999999876 78
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+..|...+.++.|+ +.+|++++.||.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 88999999999999997 5789999999999999999988776666888899999999999999998 89999996
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=302.40 Aligned_cols=244 Identities=23% Similarity=0.404 Sum_probs=218.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------eeeeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
....+..|...|.+++|+|+|.+|++|+.|+.|++|++... .....+..|...|.++.|+|++..|++++.|++
T Consensus 98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~ 177 (354)
T 2pbi_B 98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177 (354)
T ss_dssp EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc
Confidence 34556678889999999999999999999999999998643 345667789999999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 428 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 428 (567)
|++||+++ +..+..+.+|...|.+++|+|+. ..++++|+.||.|++||+++++++..+.. .+.+++|+|++..++
T Consensus 178 v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 256 (354)
T 2pbi_B 178 CALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA 256 (354)
T ss_dssp EEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEE
Confidence 99999998 77888999999999999998853 35777999999999999999999888764 578899999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEecCC--CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 429 AAAAENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
+++.|+.|++||+++.+.+..+..+ ...+.+++|+|+|.+|++++.| .|++||+.++ ..+..+.+|...|.+++
T Consensus 257 s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEE
Confidence 9999999999999999887776643 3578999999999999999999 9999999776 67788889999999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEE
Q 008393 506 FHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd 526 (567)
|+|++.+|++++.|+.|+||+
T Consensus 334 ~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999996
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=331.14 Aligned_cols=302 Identities=11% Similarity=0.083 Sum_probs=233.6
Q ss_pred CCCCCCccceeccCCcc-ceeeeeeccCCCCeEEEEEcCC------CCeEEEEeCCCcEEEEeCCCCee-----------
Q 008393 260 DPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSD------GKLLATGGHDKKAVLWHTDTLKS----------- 321 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~d------g~~lasg~~dg~I~vwd~~~~~~----------- 321 (567)
...|+.+++|+...+.. +.....+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 45778899999876532 2223457788999999999997 57999999999999999986642
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE--EEcCCCCeEEEEEeCCCcEEE
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL--DFHPNKDDLICSCDGDGEIRY 399 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l--~~~p~~~~li~s~~~dg~I~i 399 (567)
...+.+|...|++++|++++ .|++|+.||+|++||+.+.......+.+|...|.+| +|.+++..+|++|+.|++|++
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 24678899999999999864 899999999999999987555566788999999999 466765468889999999999
Q ss_pred EECCCCeeeEEEeC-----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 400 WSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 400 wd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
||++++++...+.+ .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|+|++|++|+.
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence 99998876655433 2568999999999999999999999999999888888899999999999999999999999
Q ss_pred C-eEEEEeCCCCCCCceEEEee-----cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 475 D-SVRVWTVGSGSEGECVHELS-----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
| +|++||+... .+..+. .....+..++|+|++..+ ....+..+..|+........+.+|...|.+|+|+
T Consensus 418 Dgtv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs 492 (524)
T 2j04_B 418 DGSLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN 492 (524)
T ss_dssp TTEEECCBSCSS----TTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEEC
T ss_pred CCEEEEEechHh----hccccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECC
Confidence 9 9999998643 111111 112246789999999844 2222222333333344445788999999999999
Q ss_pred cCCC---EEEEEECCCcEEEcC
Q 008393 549 TETG---YVASASHDKFVKLWK 567 (567)
Q Consensus 549 pdg~---~l~s~s~Dg~I~iWd 567 (567)
|++. +||+|+.||.|+||+
T Consensus 493 p~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 493 ETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp CSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCCccHHHHhhccCceEEEEE
Confidence 9964 999999999999995
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=301.91 Aligned_cols=250 Identities=21% Similarity=0.384 Sum_probs=210.9
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
..+|...|.+++|+|+|++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 4689999999999999999999999999999998766 46788999999999999999999999999999999999986
Q ss_pred CC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee--eEEEe---CCeeEEEEecCCCEEEEEECC
Q 008393 361 PG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVFK---GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 361 ~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~--~~~~~---~~~~~~~~~~~~~~l~~~~~d 433 (567)
.. ..+..+.+|...|.+++|+|++. +|++++.|+.|++||++++.. ...+. ..+..++|+|++..|++++.|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 43 34667889999999999999976 555999999999999988753 34454 357889999999999999999
Q ss_pred CeEEEEECCC---------------CeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc------e
Q 008393 434 NVVSILDAET---------------QACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE------C 490 (567)
Q Consensus 434 g~I~i~d~~~---------------~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~------~ 490 (567)
+.|++||... .+++..+.+ |...|.+++|++++.+|++++.| .|++|+........ .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 9999999632 244556665 88999999999999999999999 99999987643211 1
Q ss_pred EEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcEE
Q 008393 491 VHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.....+|...|.+++|+|++. +|++++.||.|++|++.+++..
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 223357889999999999984 8999999999999999887654
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-35 Score=305.71 Aligned_cols=294 Identities=22% Similarity=0.313 Sum_probs=237.7
Q ss_pred CcCeEEEecCCCccccC--CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 204 SKPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~--~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
....+.|+|||..+++. ..+++|+..+|+....+....... . +.. . ....
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~-----------------~-------~~~---~-~~~~ 117 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN-----------------K-------DPE---N-LNTS 117 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------------------------------
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccc-----------------c-------ccc---c-cccc
Confidence 34578999999987764 345899998876533222110000 0 000 0 0111
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
....+...|.+++|+|||++||+|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.+
T Consensus 118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~- 196 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT- 196 (393)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-
T ss_pred ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-
Confidence 1224455799999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----------CCeeEEEEecCCCEEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~ 431 (567)
+.....+. +...|.+++|+|....++++|+.|+.|++||++++..+..+. ..+.+++|+|++..+++++
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 55555554 667899999999445577799999999999999998876652 3578899999999999999
Q ss_pred CCCeEEEEECCCC------------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 432 AENVVSILDAETQ------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 432 ~dg~I~i~d~~~~------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
.|+.|++||+++. .+...+.+|...|.+++|++++.+|++++.| .|++||+.++ ..+..+.+|.
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~ 352 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR 352 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCC
Confidence 9999999999763 4566788999999999999999999999999 9999999876 6788889999
Q ss_pred CceEEEEEeC------CCCeEEEEEcCCeEEEEECCCC
Q 008393 499 NKFHSCVFHP------TYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 499 ~~i~~~~~sp------~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
..|.+++|++ ++.+|++++.|+.|+||++...
T Consensus 353 ~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999986 6789999999999999997643
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-35 Score=293.46 Aligned_cols=245 Identities=26% Similarity=0.450 Sum_probs=220.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEECCC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg 434 (567)
.+ +..+..+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+. ..+..++|+|++..+++++.|+
T Consensus 137 ~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 137 KT-GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp TT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CC-CEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 97 677888999999999999999976 55599999999999999998887764 2467899999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeE--EEE-cCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDS--VCW-DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~--l~~-sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
.|++||+++++.+..+.+|...+.+ ..+ .+++.+|++++.| .|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSS
T ss_pred eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcC
Confidence 9999999999999999988765433 233 4678899999999 9999999776 6788899999999999999999
Q ss_pred CeEEEEE--cCCeEEEEECC
Q 008393 511 PSLLVIG--CYQSLELWNMS 528 (567)
Q Consensus 511 ~~l~~~~--~dg~I~iwd~~ 528 (567)
.+|++++ .|+.|++|+..
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 9999987 58999999864
No 52
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=304.83 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=245.8
Q ss_pred ccceeeeeeccCCCCeEEEEEcCC---CCeEEEEeCCCcEEEEeCCC-Ceee-eeecccCccEEEEEECCCCCeEEEEeC
Q 008393 275 FSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~d---g~~lasg~~dg~I~vwd~~~-~~~~-~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+++.+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345677889999999999999999 69999999999999999987 5554 788899999999999999999999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEE--cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEE
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 427 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l 427 (567)
||.|++||+.+ +..+. +..|...|.+++| ++++. ++++++.|+.|++||+++++.+..+..+....++......+
T Consensus 107 dg~v~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 107 DKTAKMWDLSS-NQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp TSEEEEEETTT-TEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred CCcEEEEEcCC-CCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 99999999997 44444 5679999999999 77754 56699999999999999999999988877777777777899
Q ss_pred EEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCE----EEEEeCC-eEEEEeCCCCCCCceEEEeecCCC-
Q 008393 428 LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGEL----LASVSED-SVRVWTVGSGSEGECVHELSCNGN- 499 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~----l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~- 499 (567)
++++.++.+.+||++......... .+...+.++++.++... +++++.| .|++||++.......+..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 999999999999999875443332 24456677777665554 8999999 999999987644355666666655
Q ss_pred -----------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 500 -----------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 500 -----------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|.+++|+|++++|++++.||.|++||+.+++.+ .+..|...|.+++|+|++++|++++.|+..+.|
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 6999999999999999999999999999998877 777899999999999999999999998765544
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.3e-36 Score=353.51 Aligned_cols=287 Identities=22% Similarity=0.423 Sum_probs=252.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVW 356 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iw 356 (567)
.+..+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.++++|+.|+.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 5566789999999999999999999999999999999999999999999999999999999 55589999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe------------------------
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------------------ 412 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~------------------------ 412 (567)
|+.+ +..+..+.+|...|.+++|+|++. ++++++.||.|++||+.++.....+.
T Consensus 729 d~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 729 DLNQ-KECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ETTS-SSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ECCC-cchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 9998 677888999999999999999977 55599999999999998776543321
Q ss_pred ----------------------------------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCee
Q 008393 413 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 413 ----------------------------------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
..+..++|+|++..+++++.++.|++||+.++..+..+.+|...|.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 2356788999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC--------------------------ceEE--------EeecCCCceEE
Q 008393 459 SVCWDPSGELLASVSED-SVRVWTVGSGSEG--------------------------ECVH--------ELSCNGNKFHS 503 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~--------------------------~~i~--------~~~~~~~~i~~ 503 (567)
+++|+|+|.+|++++.| .|++|++...... ..+. ........+.+
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999 9999997532100 0000 01123456899
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|+|++.++++++.+|.|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|++||
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999998876 6779999999999999999999999999999996
No 54
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=341.86 Aligned_cols=352 Identities=12% Similarity=0.056 Sum_probs=261.4
Q ss_pred cCeEEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCcc
Q 008393 205 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
...+.|++ |..+++ .+.+++||..+++....+. . ...+.++ +.+++ .+..|+.+++|++..+..
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---~----~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---V----PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE---C----SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc---C----CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 44678888 665544 3456999999986554442 1 1224433 22222 245688899999987642
Q ss_pred cee-e-------eeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeeccc------------------C
Q 008393 277 FKE-A-------NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH------------------S 329 (567)
Q Consensus 277 ~~~-~-------~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~h------------------~ 329 (567)
... + ..+++|.+.|++++|+|+ +.+|++|+.||.| +||+.+++.+..+..| .
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence 100 0 346889999999999996 5789999999999 9999999998888765 5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE--e---cc-------------CCCcEEEEEEc----CCCCeE
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT--F---MG-------------HSASVMSLDFH----PNKDDL 387 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~---~~-------------h~~~V~~l~~~----p~~~~l 387 (567)
..|++++|+|++.+|++|+.||+|++||+.+ +..+.. + .. |...|.+++|+ |++..+
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 7799999999999999999999999999987 444432 2 11 34579999995 333356
Q ss_pred EEEEeCC-----CcEEEEE-------------------------------------------------------------
Q 008393 388 ICSCDGD-----GEIRYWS------------------------------------------------------------- 401 (567)
Q Consensus 388 i~s~~~d-----g~I~iwd------------------------------------------------------------- 401 (567)
+++|+.| ..|++|+
T Consensus 291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 6666443 1444444
Q ss_pred ----------CCCCeeeEE-------------------E----------------------eC---CeeEEEEecCCCEE
Q 008393 402 ----------INNGSCTRV-------------------F----------------------KG---GTAQMRFQPHLGRY 427 (567)
Q Consensus 402 ----------~~~~~~~~~-------------------~----------------------~~---~~~~~~~~~~~~~l 427 (567)
+.++..... + .+ .+..++|+|++..+
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 333211100 0 00 01123456788899
Q ss_pred EEEECCCeEEEEECCCCeEE----EE--ec-----CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------
Q 008393 428 LAAAAENVVSILDAETQACR----LS--LQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------- 487 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~----~~--~~-----~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-------- 487 (567)
++++.|++|++||+.++... .. +. +|...|.+|+|+|+|++||+|+.| +|+|||+.+++.
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 99999999999999876321 11 22 788999999999999999999999 999999976521
Q ss_pred ----------------------------------CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 488 ----------------------------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 488 ----------------------------------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..++..+.+|...|++++|+|+| +|++|+.|++|+|||+++...+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 13477888899999999999999 9999999999999999887664
Q ss_pred E------ec-cccCCeeEEEEe-----cCC---CEEEEEECCCcEEEcC
Q 008393 534 T------LT-AHEGLIAALAVS-----TET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~------~~-~h~~~V~~l~~s-----pdg---~~l~s~s~Dg~I~iWd 567 (567)
. +. +|.+.|++|+|+ ||| .+|++|+.|++|++||
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 2 22 889999999999 885 8999999999999996
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=319.14 Aligned_cols=277 Identities=19% Similarity=0.313 Sum_probs=242.3
Q ss_pred CCeEEEEEcCCCC-eEEEE----------eCCCcEEEEeCCCCe---eeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 288 SKVICCHFSSDGK-LLATG----------GHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 288 ~~V~~l~~s~dg~-~lasg----------~~dg~I~vwd~~~~~---~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
..|.+++|+|+|+ +|++| +.|+.|+|||+.+++ .+..+ .|...|++++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 4678999999997 99999 889999999999876 33333 588999999999999999999999999
Q ss_pred EEEEcCC---CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe------eeEE------EeCCeeEE
Q 008393 354 RVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRV------FKGGTAQM 418 (567)
Q Consensus 354 ~iwd~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~------~~~~------~~~~~~~~ 418 (567)
++||+.+ ....+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++ .... ....+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999986 2347788899999999999999855677799999999999999886 3222 23467899
Q ss_pred EEecC-CCEEEEEECCCeEEEEECCCCeEEEEecCC------CCCeeEEEEcCCC-CEEEEEeCC----eEEEEeCCCCC
Q 008393 419 RFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSG-ELLASVSED----SVRVWTVGSGS 486 (567)
Q Consensus 419 ~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h------~~~V~~l~~sp~g-~~l~s~s~d----~I~iwd~~~~~ 486 (567)
+|+|+ +..+++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.| .|++||++++.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 678888889999999999999999998876 7899999999997 688888877 89999998753
Q ss_pred CCceEEEee-cCCCceEEEEEeC-CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC-CEEEEEECCCc
Q 008393 487 EGECVHELS-CNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKF 562 (567)
Q Consensus 487 ~~~~i~~~~-~~~~~i~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~ 562 (567)
..+..+. .|...+.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3445566 7889999999999 9999999999999999999998877 778999999999999999 89999999999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.3e-36 Score=298.86 Aligned_cols=276 Identities=16% Similarity=0.252 Sum_probs=242.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-- 363 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-- 363 (567)
|.++|.+++|+|||++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|++||+.+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 567899999999999999998888887777666555555568999999999999999999999 99999999987432
Q ss_pred eeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeEEEeC---CeeEEEEecCCCEEEEEECCCeE
Q 008393 364 SLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 364 ~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
.+..+. +|...|.+++|+|++. ++++++.|+.|++||+.+++ ....+.. .+..++|+|++..+++++.++.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 233333 7999999999999976 45588999999999999887 4444443 46889999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
++||+++++.+..+..|...|.+++|+|++++|++++.| .|++||++++ ..+..+ .+...+.+++|+|++++|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEE
Confidence 999999999999999999999999999999999999999 9999999876 445444 36778999999999999999
Q ss_pred EEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999889999999999999999999999999999999996
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-35 Score=331.66 Aligned_cols=286 Identities=20% Similarity=0.353 Sum_probs=252.4
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+.+..+.+|.+.|.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 35566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEec--CCCEEEEEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAA 431 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~--~~~~l~~~~ 431 (567)
+.+.......+.+|...|.+++|+|++..++++++.||.|++||+.++.....+. ..+..++|+| ++..+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 9986577888899999999999999445577799999999999999888776665 4578899999 889999999
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
.++.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.| .|++||+.++ ..+..+..+...+.+++|+|++
T Consensus 206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCC
Confidence 99999999999999999999999999999999999999999998 9999999876 6788888889999999999998
Q ss_pred Ce-EEEEEcCCeEEEEECCCCcE----------E----------------------------------EeccccCCeeEE
Q 008393 511 PS-LLVIGCYQSLELWNMSENKT----------M----------------------------------TLTAHEGLIAAL 545 (567)
Q Consensus 511 ~~-l~~~~~dg~I~iwd~~~~~~----------~----------------------------------~~~~h~~~V~~l 545 (567)
.. +++++.++.+.+|++..... + .+..+...+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 75 36677788899998764321 1 112345568899
Q ss_pred EEecCCCEEEEEECCCcEEEcC
Q 008393 546 AVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 546 ~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+|+|++|++++ ||.+.||+
T Consensus 363 ~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 363 AHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp EECTTSSEEEEEE-TTEEEEEE
T ss_pred EECCCCCEEEEec-CCEEEEEE
Confidence 9999999999888 88899985
No 58
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-35 Score=303.52 Aligned_cols=279 Identities=18% Similarity=0.329 Sum_probs=239.0
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
....+|...+.+.+++.++..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 33446666644444444446788888999999999999998888775 88999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEEEe---CCeeEEEEecCCCEEEEEECCCe
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+ +..+..+.+|...|.+++|++ .++++++.||.|++||++. ...+..+. ..+.++.|+|++..+++++.|+.
T Consensus 165 ~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 S-QTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp T-CCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C-CeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 7 677888999999999999953 3677999999999999994 55555554 46788999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
|++||+++++.+..+..|...|.+++|+|++ .++++++ .| .|++||+.++ ..+..+. +...+.+++|+|+++
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999976 4666665 56 9999999876 5555554 567899999999999
Q ss_pred eEEEEE--cCCeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIG--CYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~--~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++ .|+.|++||+.++... .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 999965 7999999999987554 4678999999999999999999999999999996
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=303.46 Aligned_cols=298 Identities=18% Similarity=0.353 Sum_probs=244.0
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeec-------------ccCc
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------EHSS 330 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~-------------~h~~ 330 (567)
.+++|+...+ +....+++|.+.|++++|+| ++++||+|+.||.|++||+.+++....+. +|..
T Consensus 24 ~~~v~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 24 TRRVLGLELN---KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHTEEEC---TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cceeeccccC---cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 3456666544 34567788999999999999 99999999999999999999877665543 5999
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC--eEEEEEeCCCcEEEEECCCCee
Q 008393 331 LITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 331 ~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~--~li~s~~~dg~I~iwd~~~~~~ 407 (567)
.|.+++|+| ++.+|++++.||.|++||+.+ +..+..+. +...+.++.|.+.+. .++++++.|+.|++||+++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 999999999 778999999999999999997 55555555 788899999998643 3777999999999999999988
Q ss_pred eEEEeC---CeeEEEEecCCCE-EEEEECCCeEEEEECCCCe-EEEEe---------------cCCCCCeeEEEEcCCCC
Q 008393 408 TRVFKG---GTAQMRFQPHLGR-YLAAAAENVVSILDAETQA-CRLSL---------------QGHTKPIDSVCWDPSGE 467 (567)
Q Consensus 408 ~~~~~~---~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~-~~~~~---------------~~h~~~V~~l~~sp~g~ 467 (567)
+..+.. .+.+++|+|++.. +++++.|+.|++||++++. .+..+ ..|...|.+++|+|+++
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 877764 5788999999985 7889999999999998764 44444 56889999999999999
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEe--ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCee
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA 543 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~ 543 (567)
+|++++.| .|++||+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 338 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence 99999999 9999999887432221110 111112222233344567888899999999999999877 7788999999
Q ss_pred EEEEecCCCEEEEEECCCcEEEcC
Q 008393 544 ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 544 ~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|+|++++|++++.||.|+|||
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEEe
Confidence 999999999999999999999996
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-36 Score=304.69 Aligned_cols=250 Identities=18% Similarity=0.278 Sum_probs=204.7
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd 357 (567)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+++ .+..+.+|...|++++|++ ++++|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998764 4678899999999999986 488999999999999999
Q ss_pred cCCCC-ceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+.+.. .....+.+|...|.+++|+|++ ..++++|+.|+.|++||++.+....
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-------------------------- 141 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-------------------------- 141 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE--------------------------
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc--------------------------
Confidence 98743 3566788999999999999983 3467799999999999987642110
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCC-----------------CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPS-----------------GELLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-----------------g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
....+.+|...|.+++|+|+ +++|++++.| .|++||++......++..+.+|
T Consensus 142 ----------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 142 ----------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp ----------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred ----------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 01123456666777777765 5789999999 9999999754444567788899
Q ss_pred CCceEEEEEeCCC----CeEEEEEcCCeEEEEECCCC---c--EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 GNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN---K--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~~----~~l~~~~~dg~I~iwd~~~~---~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...|.+++|+|++ .+|++++.|++|+|||+.+. . ...+..|...|.+++|+|++++||+++.||.|+||+
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9999999999987 78999999999999999763 1 124567899999999999999999999999999996
No 61
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.5e-36 Score=307.73 Aligned_cols=250 Identities=21% Similarity=0.404 Sum_probs=216.3
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCccEEEEEECCCC-CeEEEEeC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSF 349 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~ 349 (567)
+....+++|...|.+++|+|+|++||+|+.|+.|++||+.+. .....+.+|...|.++.|.|++ ..|++|+.
T Consensus 99 ~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~ 178 (380)
T 3iz6_a 99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178 (380)
T ss_dssp EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT
T ss_pred ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC
Confidence 345667889999999999999999999999999999998753 2445678999999999999974 57999999
Q ss_pred CCcEEEEEcCCCCceeEEe-----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeEEEeC---CeeEEEE
Q 008393 350 DKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRF 420 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~~~~~~~~~~---~~~~~~~ 420 (567)
|++|++||+.+ +..+..+ .+|...|.+++|++.+..++++|+.|+.|++||++ ....+..+.+ .+.+++|
T Consensus 179 D~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 179 DQTCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp TSCEEEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred CCcEEEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence 99999999998 5566655 67999999999988556688899999999999998 4566666654 5789999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC-------CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK-------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-------~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
+|++..+++++.|+.|++||+++++.+..+..+.. .|.+++|+|+|++|++|+.| .|++||+..+ +.+.
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~ 334 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVL 334 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEE
T ss_pred ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEE
Confidence 99999999999999999999999998888765432 48999999999999999999 9999999776 4454
Q ss_pred Ee----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 493 EL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 493 ~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.+ ..|...|.+++|+|++.+|++++.|+.|+||++...+
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 44 5788999999999999999999999999999998654
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-34 Score=303.53 Aligned_cols=287 Identities=20% Similarity=0.380 Sum_probs=254.9
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
..|+.+++|+..++ +.+..+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.++.|+
T Consensus 136 ~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 136 SDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp ETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--
T ss_pred ECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--
Confidence 45678999998877 5678889999999999998 5699999999999999999999999999999999999995
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQ 417 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~ 417 (567)
+++|++|+.||.|++||+.+ +..+..+.+|...|.+++| ++. ++++++.||.|++||+++++++..+.+ .+.+
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp TTEEEEEETTSEEEEEESSS-CCEEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CcEEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 56899999999999999998 6778888999999999999 444 566999999999999999999988875 3555
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
+.| ++..+++++.|+.|++||+++++.+..+.+|...+.++.++ +++|++++.| .|++||++++ ..+..+..
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~ 357 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQG 357 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECS
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEcc
Confidence 666 78899999999999999999999999999999999988875 6799999999 9999999876 56667765
Q ss_pred ---CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee-----ccccCCeeEEEEecCCCEEEEEECCCc----E
Q 008393 497 ---NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVSTETGYVASASHDKF----V 563 (567)
Q Consensus 497 ---~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~spdg~~l~s~s~Dg~----I 563 (567)
+...|.+++|+ +.+|++++.||.|++||+.+++.+ .+ ..|.+.|.+++|+|++.+|++|+.||. |
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 77889999995 578999999999999999999877 33 378889999999999999999999998 9
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
.|||
T Consensus 436 ~v~d 439 (445)
T 2ovr_B 436 LVLD 439 (445)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=295.07 Aligned_cols=266 Identities=21% Similarity=0.380 Sum_probs=211.3
Q ss_pred CCCCCccceeccCCccceeeeee-cc-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-------CCeeeeeecccCcc
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSV-RA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSL 331 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-------~~~~~~~l~~h~~~ 331 (567)
..|+.+++|+...+ .+.....+ .+ |.+.|.+++|+|++++||+|+.|++|+|||+. +.+.+..+.+|...
T Consensus 31 ~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 31 STDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE 109 (330)
T ss_dssp ESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C
T ss_pred cCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc
Confidence 45678899998764 23344455 44 99999999999999999999999999999985 34567788999999
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--e
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S 406 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~ 406 (567)
|.+++|+|++++|++|+.|++|++||+...+ ..+..+.+|...|.+++|+|++. +|++++.|+.|++||+.++ +
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~ 188 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWE 188 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCee
Confidence 9999999999999999999999999995322 45678889999999999999976 5669999999999999876 5
Q ss_pred eeEEEeC---CeeEEEEecC--CCEEEEEECCCeEEEEECCCC--------eEEEEecC-CCCCeeEEEEcCCCCEEEEE
Q 008393 407 CTRVFKG---GTAQMRFQPH--LGRYLAAAAENVVSILDAETQ--------ACRLSLQG-HTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 407 ~~~~~~~---~~~~~~~~~~--~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~-h~~~V~~l~~sp~g~~l~s~ 472 (567)
++..+.+ .+..+.|+|+ +..+++++.|+.|++||++.+ .+...+.. |...|.+++|++++ +|+++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASV 267 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEE
Confidence 6666654 5678899998 567899999999999998764 45556655 89999999999765 78889
Q ss_pred eCC-eEEEEeCCCCCCCceEEEeecCCC-ceEEEEEeC--CCCeEEEEEcCCeEEEEECCC
Q 008393 473 SED-SVRVWTVGSGSEGECVHELSCNGN-KFHSCVFHP--TYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 473 s~d-~I~iwd~~~~~~~~~i~~~~~~~~-~i~~~~~sp--~~~~l~~~~~dg~I~iwd~~~ 529 (567)
+.| .|+|||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+.+
T Consensus 268 ~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 988 999999875421112223356766 899999999 688999999999999999865
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.2e-36 Score=314.28 Aligned_cols=282 Identities=16% Similarity=0.260 Sum_probs=222.4
Q ss_pred eeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee--eeeecccCccEEEEEECC-CCCeEEEEeCCCcEE
Q 008393 279 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~--~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~ 354 (567)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3455678999999999999 567999999999999999987654 445668999999999998 688999999999999
Q ss_pred EEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE---eCCeeEEEEecCCC-EEE
Q 008393 355 VWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLG-RYL 428 (567)
Q Consensus 355 iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~-~l~ 428 (567)
|||+++ ........ .+...+.+++|++++. +|++|+.||.|++||++.. .+..+ ...+.+++|+|++. .++
T Consensus 191 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 191 LQDFKG-NILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEETTS-CEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EeeccC-CceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEE
Confidence 999986 33222222 2345678999999976 5569999999999999754 33333 34678999999987 466
Q ss_pred EEECCCeEEEEECCCCeEEE---EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC-----
Q 008393 429 AAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN----- 499 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~---~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~----- 499 (567)
+++.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++.| .|+|||+.++. +...+..+..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD---CPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS---SEEEECCCCCCCCSS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc---cceEEeccccccccc
Confidence 77889999999998865433 335699999999999999999999999 99999998763 3333333321
Q ss_pred -ceEEEEEeCCCCeEEEEEc------------CCeEEEEECCCCcEE-E-eccccCCeeEE-EEecCCCEEEEEECCCcE
Q 008393 500 -KFHSCVFHPTYPSLLVIGC------------YQSLELWNMSENKTM-T-LTAHEGLIAAL-AVSTETGYVASASHDKFV 563 (567)
Q Consensus 500 -~i~~~~~sp~~~~l~~~~~------------dg~I~iwd~~~~~~~-~-~~~h~~~V~~l-~~spdg~~l~s~s~Dg~I 563 (567)
.+..+.|++++..++++.. ++.|++||..+++.+ . ...|...|.++ +|+|+|.+|++|+ |+.|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 2334567777777766643 347999999999877 3 34788889887 6999999999876 7899
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
+|||
T Consensus 424 ~iW~ 427 (435)
T 4e54_B 424 LIWS 427 (435)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9997
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.3e-35 Score=294.93 Aligned_cols=266 Identities=14% Similarity=0.199 Sum_probs=221.0
Q ss_pred CCCCCCccceeccCCc----cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEE
Q 008393 260 DPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~----~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i 335 (567)
...|+.+++|++.... .......+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus 45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v 124 (343)
T 2xzm_R 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV 124 (343)
T ss_dssp EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEE
T ss_pred EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 3467789999987542 224567889999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCCCC---------eEEEEEeCCCcEEEEECC
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKD---------DLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~---------~li~s~~~dg~I~iwd~~ 403 (567)
+|+|++++|++++.|++|++||+.. . ...... +|...|.+++|+|++. .++++++.|+.|++||.
T Consensus 125 ~~sp~~~~l~s~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~- 201 (343)
T 2xzm_R 125 AFSPDNRQILSAGAEREIKLWNILG-E-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT- 201 (343)
T ss_dssp EECSSTTEEEEEETTSCEEEEESSS-C-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-
T ss_pred EECCCCCEEEEEcCCCEEEEEeccC-C-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-
Confidence 9999999999999999999999974 2 223332 7889999999999863 46779999999999994
Q ss_pred CCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC-CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEE
Q 008393 404 NGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 479 (567)
Q Consensus 404 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~i 479 (567)
.......+. ..+.+++|+|++..+++++.|+.|++||+.. ......+. +...|.+++|+|++.+|++++++.|++
T Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~i 280 (343)
T 2xzm_R 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKI 280 (343)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEE
T ss_pred CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEE
Confidence 455555554 3578899999999999999999999999954 33333443 456799999999999988777669999
Q ss_pred EeCCCCCCCceEEEee-----------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 480 WTVGSGSEGECVHELS-----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~-----------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
||+.++.... +..+. +|...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 281 w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 281 FNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9998764322 22222 56778999999999999999999999999998654
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-34 Score=299.29 Aligned_cols=268 Identities=22% Similarity=0.410 Sum_probs=230.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+.+|+||++ ++||+|. |++|+|||+.+++....+. +|...|++|+|+|+|++|++|+.||.|+|||+.+ +..+..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEE
Confidence 347999976 4888775 9999999999999877665 6788899999999999999999999999999998 788899
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
+.+|...|.++++++ .++++|+.|+.+++||..... .+..+. ..+..+.+.+++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 377799999999999998754 344444 3567888999999999999999999999987
Q ss_pred Ce----EEEEecCCCCCeeEEEEcCCC-CEEEEE--eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 444 QA----CRLSLQGHTKPIDSVCWDPSG-ELLASV--SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 444 ~~----~~~~~~~h~~~V~~l~~sp~g-~~l~s~--s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
++ .+.....|...|.+++|+|++ .+++++ +.| .|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 355677899999999999965 455554 467 9999999877 56666554 467889999999999988
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|+|.+||||+.|++|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6899999999999887 7889999999999999999999999999999997
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.1e-36 Score=306.14 Aligned_cols=278 Identities=14% Similarity=0.121 Sum_probs=222.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCC-------cEEEEeCCCCee----------eeeecccCccEEEEEECCCCCeEEEE--
Q 008393 287 TSKVICCHFSSDGKLLATGGHDK-------KAVLWHTDTLKS----------KTNLEEHSSLITDVRFSPSMPRLATS-- 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg-------~I~vwd~~~~~~----------~~~l~~h~~~V~~i~fsp~~~~l~s~-- 347 (567)
.-||+|++|+|||++|++||.+. .|++|++..... ...+..|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997543 599999875432 23466788889888875 4466665
Q ss_pred ---------eCCCcEEEEEcCCCCceeEEe--------ccCCCcEEEEEEcCCCCeEE-EEEeCCCcEEEEECCCCeeeE
Q 008393 348 ---------SFDKTVRVWDADNPGYSLRTF--------MGHSASVMSLDFHPNKDDLI-CSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 348 ---------s~dg~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~~p~~~~li-~s~~~dg~I~iwd~~~~~~~~ 409 (567)
+.|+.+++|++......+... ..+...+.+++|+|||..++ ++++.|++|+|||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 457789999987644433222 23456799999999998775 355679999999999999888
Q ss_pred EEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEE
Q 008393 410 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW 480 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iw 480 (567)
.+. ..+..++|+|++..+++++ ++.+.+|+..+++.+. ....|...|.+++|+|++.++++++.+ .+++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 775 3578999999988877776 5567777777776554 345688899999999999999998755 47788
Q ss_pred eCCCCCC-CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-E-eccccCCeeEEEEecCCCEEEEE
Q 008393 481 TVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 481 d~~~~~~-~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
++..... ......+..+...|++++|+|+|++|++|+.|+.|+|||+.+++.+ . +.+|...|++|+|+|||++||||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 8865422 1234567788999999999999999999999999999999999887 4 46899999999999999999999
Q ss_pred ECCCcEEEcC
Q 008393 558 SHDKFVKLWK 567 (567)
Q Consensus 558 s~Dg~I~iWd 567 (567)
+.|++|+|||
T Consensus 331 S~D~tvrvw~ 340 (365)
T 4h5i_A 331 SAANTIHIIK 340 (365)
T ss_dssp ETTSEEEEEE
T ss_pred eCCCeEEEEE
Confidence 9999999996
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-34 Score=300.85 Aligned_cols=291 Identities=20% Similarity=0.271 Sum_probs=251.2
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC--
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-- 338 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs-- 338 (567)
..|+.+++|+..++ +.+..+.+|.+.|.+++|++++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 139 s~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 139 ADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred cCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 45678999998877 5778889999999999999988 99999999999999999999999999999999999998
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCc----------------------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGY----------------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~----------------------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
+++.+|++|+.||.|++||+.+... .+..+.+|...|.++... +. ++++++.|+.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~ 291 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GN-IVVSGSYDNT 291 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--TT-EEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--CC-EEEEEeCCCe
Confidence 5778999999999999999986432 255778899999988544 44 5669999999
Q ss_pred EEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe
Q 008393 397 IRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|++||+.+++++..+.+ .+.+++|++++..+++++.|+.|++||+++++++..+.+|...|.+++|+ +.+|++++
T Consensus 292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 99999999999988764 57889999999999999999999999999999999999999999999997 57999999
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE--eccccCCeeEEEEecC
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTE 550 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd 550 (567)
.| .|++||+.++. ..... .+...+..++|++++.+|++++ |+.|++||+.+++.+. +..|...|.+++|+ +
T Consensus 370 ~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 370 ADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G 443 (464)
T ss_dssp TTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred CCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence 99 99999998753 33333 3566778889999999888888 8999999999999884 57889999999997 4
Q ss_pred CCEEEEEECCCcEEEc
Q 008393 551 TGYVASASHDKFVKLW 566 (567)
Q Consensus 551 g~~l~s~s~Dg~I~iW 566 (567)
..++++++.||.+.+|
T Consensus 444 ~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 444 KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TEEEEEEEETTEEEEE
T ss_pred CEEEEEEEeCCeEEEE
Confidence 4556666677766654
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.9e-36 Score=309.86 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=234.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.+++++|+|+|++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.+ +.....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeec
Confidence 3457999999999999999999999999998888777777 4556668899999999999999999999987 6777777
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
.+|...|.+++|+|++. ++++++.|+.|++||+.+++.+..+.+ .+.+++|+|++..+++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 556999999999999999988887764 57889999999999999999999999999999
Q ss_pred EEEEecC---CCCCee---------------------EEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-ecCCC
Q 008393 446 CRLSLQG---HTKPID---------------------SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGN 499 (567)
Q Consensus 446 ~~~~~~~---h~~~V~---------------------~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-~~~~~ 499 (567)
.+..+.. |...|. +++|+|++++|++++.| .|++||++++ ..+..+ ..+..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 333444 45557899999999999 9999999876 344444 45778
Q ss_pred ceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcE--EEecc-ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKT--MTLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~--~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.+++|+|++. +|++++.||.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+||+
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 899999999999 999999999999999998754 35555 6778888865 5788999999999999996
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.6e-35 Score=329.58 Aligned_cols=285 Identities=18% Similarity=0.311 Sum_probs=254.7
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
++..+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEe---CCeeEEEEec-CCCEEEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK---GGTAQMRFQP-HLGRYLAAA 431 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~---~~~~~~~~~~-~~~~l~~~~ 431 (567)
|+.+ +..+..+.+|...|.+++|+|++.. +++++.||.|++||+.++ .....+. ..+.+++|+| ++..+++++
T Consensus 83 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNT-GEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCC-CcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9998 6778888999999999999999875 458999999999999987 5555554 4578899999 778899999
Q ss_pred CCCeEEEEECCCCeEEEEecCCC-CCeeEEEEcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 432 AENVVSILDAETQACRLSLQGHT-KPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~-~~V~~l~~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.|+.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.| .|++||+.++ ..+..+..|...+.+++|+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEc
Confidence 99999999999887777776654 8899999999 99999999999 9999999776 6788888899999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC--EEEEEECCCcEEEcC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVKLWK 567 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iWd 567 (567)
|++.+|++++.||.|++||+.+++.. .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 99999999999999999999998877 7778889999999999987 455555 55566663
No 71
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=309.27 Aligned_cols=276 Identities=17% Similarity=0.319 Sum_probs=228.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-----------eeeeecccC------------ccEEEEEECCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTNLEEHS------------SLITDVRFSPSM 341 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-----------~~~~l~~h~------------~~V~~i~fsp~~ 341 (567)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 468999999999999999999999999999998876 578888998 889999999998
Q ss_pred --CeEEEEeCCCcEEEEEcCCCCce--------------------------------------eEE-eccCCCcEEEEEE
Q 008393 342 --PRLATSSFDKTVRVWDADNPGYS--------------------------------------LRT-FMGHSASVMSLDF 380 (567)
Q Consensus 342 --~~l~s~s~dg~I~iwd~~~~~~~--------------------------------------~~~-~~~h~~~V~~l~~ 380 (567)
.+|++++.|+.|++||+.+.... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998752110 112 3689999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-CeeeEEE----------eCCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeE--
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINN-GSCTRVF----------KGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC-- 446 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~~----------~~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~-- 446 (567)
+|++.. +++| .|+.|++||+++ +..+..+ ...+.+++|+|++ ..+++++.|+.|++||+++++.
T Consensus 186 ~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 999764 4477 799999999994 4444432 3457899999998 8999999999999999999886
Q ss_pred --EEEecCCCC------------CeeEEEEcCCCCEEEEEeCCeEEEEeCCC-CCCCceEEEeecCCCc-----------
Q 008393 447 --RLSLQGHTK------------PIDSVCWDPSGELLASVSEDSVRVWTVGS-GSEGECVHELSCNGNK----------- 500 (567)
Q Consensus 447 --~~~~~~h~~------------~V~~l~~sp~g~~l~s~s~d~I~iwd~~~-~~~~~~i~~~~~~~~~----------- 500 (567)
+..+..|.. .|.+++|+|+|++|++++.+.|++||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 778888876 89999999999999999888999999986 4 445555555421
Q ss_pred ----eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccc---------------------------------cCCee
Q 008393 501 ----FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH---------------------------------EGLIA 543 (567)
Q Consensus 501 ----i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h---------------------------------~~~V~ 543 (567)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 23489999999999999999999999999987765433 35688
Q ss_pred EEEEecCCCEEEEEECCCcEEEc
Q 008393 544 ALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 544 ~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.++|+|++.+||+++.|+ +++|
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998876 6666
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.4e-35 Score=295.27 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=216.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVR 354 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~ 354 (567)
..+.+|.+.|++++|+|++++||+|+.||.|++||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 56777889999999999999 699999999999999
Q ss_pred EEEcCCCC--------ceeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEE-------------
Q 008393 355 VWDADNPG--------YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF------------- 411 (567)
Q Consensus 355 iwd~~~~~--------~~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~------------- 411 (567)
+||+.+.. ..+..+.+|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998743 457788899999999999998 65 5558999999999999987754332
Q ss_pred ---eCCeeEEEEecC---CCEEEEEECCCeEEEEECCCCeE--EEEecCCCCCeeEEEEcCCC----CEEEEEeCC-eEE
Q 008393 412 ---KGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVR 478 (567)
Q Consensus 412 ---~~~~~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~V~~l~~sp~g----~~l~s~s~d-~I~ 478 (567)
...+.++.|+|+ +..+++++.++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++++.| .|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 235678999997 88999999999998888888765 77888999999999999998 899999999 999
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE----cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG----CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 553 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~----~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 553 (567)
+||++.+.. ...............+.+....+..+. ....+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999986532 222222222333333444433333333 2334555555555544 67789999999999999999
Q ss_pred EEEEECCCcEEEcC
Q 008393 554 VASASHDKFVKLWK 567 (567)
Q Consensus 554 l~s~s~Dg~I~iWd 567 (567)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-34 Score=303.19 Aligned_cols=270 Identities=23% Similarity=0.474 Sum_probs=240.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.+....+|...|+|++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 34445578888999988 7899999999999999999999999999999999999999 7889999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---EEEeC---CeeEEEEecCCCEEEEEEC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKG---GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~~~~~---~~~~~~~~~~~~~l~~~~~ 432 (567)
.+ +..+..+.+|...|.+++|+++ ++++|+.||.|++||+.++... ..+.+ .+.++.+ ++..+++++.
T Consensus 201 ~~-~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NT-GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SS-CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CC-CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 98 6778899999999999999743 6779999999999999987755 33333 4556666 7789999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
|+.|++||+++++.+..+.+|...|.+++|+ +.+|++++.| .|++||++++ .++..+..|...+.+++| ++.
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSS
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCC
Confidence 9999999999999999999999999999994 7899999999 9999999876 788889999999999998 788
Q ss_pred eEEEEEcCCeEEEEECCCCc---------EE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENK---------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~---------~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.||.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 99999999999999997654 33 78899999999999 788999999999999997
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.2e-35 Score=296.20 Aligned_cols=275 Identities=15% Similarity=0.138 Sum_probs=236.3
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---eeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 355 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~i 355 (567)
+....+|.+.|++++|+|++++|++++.|+.|+||++.+++ ....+..|...|.+++|+|+++ +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998876 3455668999999999999999 9999999999999
Q ss_pred EEc-CCCCceeEEecc--CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------CeeeEEE--eCCeeEEEEe
Q 008393 356 WDA-DNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVF--KGGTAQMRFQ 421 (567)
Q Consensus 356 wd~-~~~~~~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~---------~~~~~~~--~~~~~~~~~~ 421 (567)
||+ .+. ....+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+ ...+.++.|+
T Consensus 84 wd~~~~~--~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSP--SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSS--SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCC--ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 763 3377788 999999999999 55 566999999999999987 5544443 4567888898
Q ss_pred cCCCEEEEEECCCeEEEEECCC-Ce--EEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCC---CCceEEE
Q 008393 422 PHLGRYLAAAAENVVSILDAET-QA--CRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS---EGECVHE 493 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~-~~--~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~---~~~~i~~ 493 (567)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++++|++++.| .|++|++.... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 876 99999999999999998 43 4445567889999999999 99999999999 99999997651 0245556
Q ss_pred eecCCC---------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eeccc-cCCeeEEEEecCCCEEEEEECCCc
Q 008393 494 LSCNGN---------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 494 ~~~~~~---------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
+..+.. .|.+++|+|++++|++++.||.|++||+.+++.+ .+..| ...|.+++ |++++|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666654 8999999999999999999999999999998877 67787 99999999 99999999999998
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-34 Score=314.40 Aligned_cols=293 Identities=18% Similarity=0.295 Sum_probs=257.3
Q ss_pred CCCccceeccCCc-cceeeeeeccCCCC-eEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC--------eeeeeecccCc
Q 008393 263 DAGGRGMDVSQGF-SFKEANSVRASTSK-VICCHFSS--DGKLLATGGHDKKAVLWHTDTL--------KSKTNLEEHSS 330 (567)
Q Consensus 263 d~~~~~~~~~~~~-~~~~~~~l~~h~~~-V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~--------~~~~~l~~h~~ 330 (567)
+..+++|+..++. ..+....+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +....+..|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 4468899988652 22577889999999 99999999 9999999999999999999754 77788889999
Q ss_pred cEEEEEECCCCCeEEEEeCC----CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 008393 331 LITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~ 406 (567)
.|.+++|+|++++|++++.+ +.|++||. +..+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 99999999999999999988 68888883 457788899999999999999988778899999999999999999
Q ss_pred eeEEEeC------CeeEEEEecC-CCEEEEEECCCeEEEEECCCCeEEEEe-c---CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 407 CTRVFKG------GTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSL-Q---GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 407 ~~~~~~~------~~~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~-~---~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.+..+.. .+.+++|+|+ +..+++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++.|
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence 9888764 4678999999 999999999999999999999999998 6 899999999999 99999999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEec
Q 008393 476 -SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 549 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 549 (567)
.|++||++++ +.+..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+ .+.+|...|.+++| |
T Consensus 274 ~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 274 ATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp SEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred CcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence 9999999876 666677665 3567788886 8999999999999999999987766 67788888888888 7
Q ss_pred CCCEEEEEECCCcEEEcC
Q 008393 550 ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iWd 567 (567)
+ |++++.||.|++||
T Consensus 349 ~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 349 P---LISGSYDGRIMEWS 363 (615)
T ss_dssp T---TEEEETTSCEEETT
T ss_pred C---cEEECCCCeEEEEE
Confidence 7 77777778887775
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=282.90 Aligned_cols=268 Identities=22% Similarity=0.390 Sum_probs=227.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+.+|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+++ +..+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEE
Confidence 3579999986 777764 9999999999999887765 6788899999999999999999999999999998 788899
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. .....+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 999999999887764 3677999999999999987643 34443 3567888999999999999999999999987
Q ss_pred Ce----EEEEecCCCCCeeEEEEcCCCC-EE--EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 444 QA----CRLSLQGHTKPIDSVCWDPSGE-LL--ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 444 ~~----~~~~~~~h~~~V~~l~~sp~g~-~l--~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
++ .......+...|.++++++++. ++ ++++.+ .|++||.... .. .....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---AC-LSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CE-EEEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---cc-cccccceeeeeeeeecccccceEE
Confidence 64 3445667888999999999765 33 344556 8999999765 23 333456778999999999999888
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++ .|+.|++||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6899999999999887 7889999999999999999999999999999997
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-33 Score=294.37 Aligned_cols=245 Identities=20% Similarity=0.346 Sum_probs=215.3
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.+|...|+||+|+|||++||+|+.||.|+|||+.+++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 456788999999999999999999999999999999999999999999999998885 569999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEE---eCCeeEEEEecCCCEEEEE---E
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVF---KGGTAQMRFQPHLGRYLAA---A 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~---~~~~~~~~~~~~~~~l~~~---~ 431 (567)
...+..+.+|...+..+.|.+++.. +++++.|+.|++|+..+++. +..+ ...+..++|+|.+..+++. +
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred ceeeEEecccccceeeeeecCCCCe-eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 7888899999999999999999874 55999999999999987653 2222 3467889999987766543 2
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.|+.|++||+.++++...+..| ..+.++.|+++++.|++++ .| .|+|||+.++ .++..+.+|...|.+++|+|
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 5899999999999999888855 5788999999999888775 56 8999999876 78889999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
+|.+|++++.|++|+|||+.+....
T Consensus 375 dg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSCSSCC
T ss_pred CCCEEEEEecCCeEEEEECCCCCcc
Confidence 9999999999999999999876543
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-33 Score=295.18 Aligned_cols=272 Identities=26% Similarity=0.501 Sum_probs=240.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +.+|++|+.||.|++||
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 455678999997643 255568999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg 434 (567)
+.+ +..+..+.+|...|.++.|++ + .+++|+.||.|++||+.+++.+..+.+ .+.++.+ ++..+++++.|+
T Consensus 186 ~~~-~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AET-GECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCc-CcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 998 778889999999999999973 3 567999999999999999999888765 3556666 788999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.|++||+++++.+..+.+|...|.+++| ++.+|++++.| .|++||++++ .++..+..+...+.++.++ +.+|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 78999999999 9999999876 6788888888888887774 6689
Q ss_pred EEEEcCCeEEEEECCCCcEE-Eecc---ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTM-TLTA---HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~-~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++.||.|++||+.+++.+ .+.. |...|.+++|+ +++|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 4544 88899999995 67999999999999996
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=295.41 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=216.6
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~ 354 (567)
.+..+++|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999999999999999999999999998 67788889999999999999987 89999999999999
Q ss_pred EEEcCCCC-ceeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPG-YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (567)
+||+.+.. ..+..+..|...|.+++|+|+ +. ++++++.|+.|++||+.+......
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~--------------------- 140 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP--------------------- 140 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE---------------------
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee---------------------
Confidence 99998732 266778889999999999998 55 566899999999999887532211
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-------------CCCEEEEEeCC-eEEEEeCCCCCCC-ceEEEeec
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSC 496 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-------------~g~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~ 496 (567)
..+..|...|.+++|+| ++.+|++++.| .|++||++++... ..+..+..
T Consensus 141 ----------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 141 ----------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp ----------------EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred ----------------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 13456888999999999 69999999999 9999999876432 45667888
Q ss_pred CCCceEEEEEeCC---CCeEEEEEcCCeEEEEECCCCc----EE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 497 NGNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK----TM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 497 ~~~~i~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~----~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|...|.+++|+|+ +.+|++++.|+.|++||+.++. .. ....|...|.+++|+|++++|++++.||.|+|||
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 9999999999999 8999999999999999999873 22 2335889999999999999999999999999996
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=287.30 Aligned_cols=247 Identities=16% Similarity=0.323 Sum_probs=212.7
Q ss_pred cCCCCeEEEEEcCC---CCeEEEEeCCCcEEEEeCCCCe-eeeeecccCccEEEEEE------CCCCCeEEEEeCCCcEE
Q 008393 285 ASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRF------SPSMPRLATSSFDKTVR 354 (567)
Q Consensus 285 ~h~~~V~~l~~s~d---g~~lasg~~dg~I~vwd~~~~~-~~~~l~~h~~~V~~i~f------sp~~~~l~s~s~dg~I~ 354 (567)
+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 78999999999999 7999999999999999999988 88999999999999955 68999999999999999
Q ss_pred EEEcCCCCceeEEeccCCC----cEEEEE----EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEec--
Q 008393 355 VWDADNPGYSLRTFMGHSA----SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQP-- 422 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~----~V~~l~----~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~-- 422 (567)
+||+.+....+..+..|.+ .|.+++ |++++. ++++++.|+.|++||+++++..... ...+..++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 9999985546777766655 899998 567765 5668999999999999999876554 45788999999
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeEEEEe-----cCCCCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCC------
Q 008393 423 -HLGRYLAAAAENVVSILDAETQACRLSL-----QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEG------ 488 (567)
Q Consensus 423 -~~~~l~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~------ 488 (567)
++..+++++.++.|++||+++++....+ .+|...|.+++|+|++. +|++++.| .|++||++.+...
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 8999999999999999999887554433 48999999999999998 89999999 9999999865433
Q ss_pred ----------ceEEEeecCCCceEEEEEeCCCCeEE-EEEcCCeEEEEECCCCcE
Q 008393 489 ----------ECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKT 532 (567)
Q Consensus 489 ----------~~i~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~ 532 (567)
..+..+..|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46788899999999999999999998 799999999999987653
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-33 Score=292.65 Aligned_cols=276 Identities=15% Similarity=0.246 Sum_probs=232.8
Q ss_pred CeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCC
Q 008393 289 KVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 289 ~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
...+++++|+...+ ++++.||.|+||++... +....+.+|...|++++|+| ++.+|++|+.||.|+|||+.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468899887544 45788999999999654 23456789999999999999 89999999999999999998743
Q ss_pred ------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--e---CCeeEEEEecCCCEEEEEE
Q 008393 363 ------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K---GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 363 ------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~ 431 (567)
..+..+.+|...|.+++|+|++..++++++.|+.|++||+++++.+..+ . ..+.+++|+|++..+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5678889999999999999998778889999999999999999998887 3 3578899999999999999
Q ss_pred CCCeEEEEECCCCeEEEEe-cCCCCC-eeEEEEcCCCCEEEEE---eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 432 AENVVSILDAETQACRLSL-QGHTKP-IDSVCWDPSGELLASV---SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~-~~h~~~-V~~l~~sp~g~~l~s~---s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ +.| .|++||++++........+ .+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEE
Confidence 9999999999999999988 788776 8999999999999999 677 9999999876543333322 4567799999
Q ss_pred EeCCCCeEEEEE-cCCeEEEEECCCCc--EEEec--cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIG-CYQSLELWNMSENK--TMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~-~dg~I~iwd~~~~~--~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 33333 35689999999999998775 567899985
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.8e-33 Score=308.58 Aligned_cols=266 Identities=19% Similarity=0.290 Sum_probs=227.6
Q ss_pred CCCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 336 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~ 336 (567)
..+.|+.+++|++.+... -.....+.+|...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA 479 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence 356788999999876432 234567899999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe---ccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
|+|++++|++|+.|++|+|||+.. ....... .+|...|.+++|+|++. .++++++.|+.|++||++++++...+.
T Consensus 480 ~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 480 FSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeCCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999999999999999999999875 3222222 46889999999999863 467799999999999999999888876
Q ss_pred C---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 413 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 413 ~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+ .+.+++|+|++..+++++.|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++.+.|+|||++++ .
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~ 634 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESK---S 634 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---E
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---C
Confidence 5 478899999999999999999999999999998887764 46899999999999999888779999999876 4
Q ss_pred eEEEeecC-------------------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 490 CVHELSCN-------------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 490 ~i~~~~~~-------------------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
.+..+..+ ...+.+++|+|++++|++++.||.|+|||+..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 44443321 12368899999999999999999999999853
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-33 Score=286.33 Aligned_cols=264 Identities=14% Similarity=0.251 Sum_probs=227.7
Q ss_pred CCCCccceeccCCccceeeeeecc-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.|+.+++|+..++. ....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| +
T Consensus 111 ~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 185 (401)
T 4aez_A 111 LERNVYVWNADSGS---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--N 185 (401)
T ss_dssp ETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--E
T ss_pred CCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--C
Confidence 45678899988774 3333333 8999999999999999999999999999999999999999999999999999 4
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQ 417 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~ 417 (567)
+.+|++++.||.|++||+......+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+. ..+..
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 679999999999999999966778888999999999999999876 55599999999999999998887775 35789
Q ss_pred EEEecCCCEEEEEE---CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceE
Q 008393 418 MRFQPHLGRYLAAA---AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i 491 (567)
++|+|++..+++.+ .|+.|++||+.+++.+..+. +...|.+++|+|++++|++++ .| .|++||+.++. ....
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~ 342 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQ 342 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeE
Confidence 99999887776655 49999999999999988886 667899999999999999954 67 99999998642 2344
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..+..|...|.+++|+|++.+|++++.||.|++||+.+++.+
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 557789999999999999999999999999999999988766
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-32 Score=275.94 Aligned_cols=268 Identities=18% Similarity=0.278 Sum_probs=232.7
Q ss_pred CCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
.+.|+.+++|++.+... ......+++|...|.+++|+|+|++|++|+.|+.|++|+............+...+..+.+
T Consensus 57 ~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (340)
T 4aow_A 57 ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136 (340)
T ss_dssp EETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEE
Confidence 45688899999877543 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEeC---
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKG--- 413 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~~--- 413 (567)
++++.+|++++.|+.+++||+...........+|...|..++|++++. .++++++.|+.|++||+.+++.+..+.+
T Consensus 137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 999999999999999999999875555566778999999999988754 4677999999999999999999888764
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE-
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH- 492 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~- 492 (567)
.+.+++|+|++..+++++.|+.|++||+++.+.+..+..+ ..|.+++|+|++.+++++.++.|++||++++ ..+.
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~ 292 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDE 292 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEe
Confidence 5788999999999999999999999999999999888754 6899999999988777666559999999865 3332
Q ss_pred --------EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 493 --------ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 493 --------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
....|...|.+++|+|++++|++++.||.|+|||+.+|+
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 334678889999999999999999999999999999875
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-33 Score=287.02 Aligned_cols=262 Identities=17% Similarity=0.243 Sum_probs=225.8
Q ss_pred CCccceeccCCccceeeeeec--cCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 264 AGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
..+++|+..++.....+..+. .|...|++++|+|+ |.+|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 357899988776555555444 37789999999999 679999999999999999999999999999999999999
Q ss_pred CC-CCCeEEEEeCCCcEEEEEcCCCCceeEEe---ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---
Q 008393 338 SP-SMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--- 410 (567)
Q Consensus 338 sp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--- 410 (567)
+| ++.+|++++.||.|++||+.+ +..+..+ .+|...|.+++|+|++.. +++++.||.|++||+++++....
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSADYDLLGEK-IMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTT-TEEEEEECSTTSCSSCEEEEEECTTSSE-EEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeec-CeEEEEecccccccCceeEEEECCCCCE-EEEecCCCCEEEEECCCCccccccce
Confidence 99 899999999999999999997 6667777 689999999999999764 55899999999999998754422
Q ss_pred ----------------------------EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe--------------EEE
Q 008393 411 ----------------------------FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--------------CRL 448 (567)
Q Consensus 411 ----------------------------~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--------------~~~ 448 (567)
....+.+++|+ +..+++++.|+.|++||+.++. .+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 33457788888 6799999999999999998763 478
Q ss_pred EecCCCCCeeEEEEcCC--CCEEEEEeCC-eEEEEeCCCCCCCc-eEEEeecC--CCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 449 SLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEGE-CVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 449 ~~~~h~~~V~~l~~sp~--g~~l~s~s~d-~I~iwd~~~~~~~~-~i~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.+..|...|.+++|+|+ +++|++++.| .|++||+.++.... .+..+..+ ...|.+++|+|++++|++++.||.|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 88899999999999999 9999999999 99999998875433 55567777 6899999999999999999999999
Q ss_pred EEEECCC
Q 008393 523 ELWNMSE 529 (567)
Q Consensus 523 ~iwd~~~ 529 (567)
++||+.+
T Consensus 360 ~iwd~~~ 366 (366)
T 3k26_A 360 WRWDRLR 366 (366)
T ss_dssp EEEEC--
T ss_pred EEEEecC
Confidence 9999853
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.3e-33 Score=288.82 Aligned_cols=265 Identities=17% Similarity=0.164 Sum_probs=232.3
Q ss_pred CCCCCccceeccCCc---cceeeeeeccCCCCeEEEEEcCC----C---CeEEEEeCCCcEEEEeCCCCee-----eeee
Q 008393 261 PRDAGGRGMDVSQGF---SFKEANSVRASTSKVICCHFSSD----G---KLLATGGHDKKAVLWHTDTLKS-----KTNL 325 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~---~~~~~~~l~~h~~~V~~l~~s~d----g---~~lasg~~dg~I~vwd~~~~~~-----~~~l 325 (567)
..|+.+++|+...+. .+..+..+.+|...|.+++|+++ + ++|++++.||.|++||+.+++. ...+
T Consensus 33 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 112 (397)
T 1sq9_A 33 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 112 (397)
T ss_dssp ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred cCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence 346678899988764 34467888899999999999999 9 9999999999999999998887 8888
Q ss_pred ccc-----CccEEEEEEC----CCCCe-EEEEeCCCcEEEEEcCC------CCceeE-----Ee-------ccCCCcEEE
Q 008393 326 EEH-----SSLITDVRFS----PSMPR-LATSSFDKTVRVWDADN------PGYSLR-----TF-------MGHSASVMS 377 (567)
Q Consensus 326 ~~h-----~~~V~~i~fs----p~~~~-l~s~s~dg~I~iwd~~~------~~~~~~-----~~-------~~h~~~V~~ 377 (567)
..| ...|.+++|+ |++++ |++++.||.|++||+.+ .. .+. .+ ..|...|.+
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 191 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATS 191 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCE
T ss_pred cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceE
Confidence 888 5999999999 99999 99999999999999986 32 223 55 458999999
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEECC---CeEEEEECCCCe
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQA 445 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~ 445 (567)
++|+|++ ++++++.|+.|++||+++++.+..+.. .+.+++|+|++..+++++.+ +.|++||+++++
T Consensus 192 ~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 192 VDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 9999997 677999999999999999998887765 47889999999999999999 999999999999
Q ss_pred EEEEecC-------------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee------cC--------
Q 008393 446 CRLSLQG-------------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS------CN-------- 497 (567)
Q Consensus 446 ~~~~~~~-------------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~------~~-------- 497 (567)
.+..+.+ |...|.+++|+|++++|++++.| .|++||++++ +.+..+. .+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBC
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccc
Confidence 9999998 99999999999999999999999 9999999876 6777887 77
Q ss_pred -------CCceEEEEEeCCC----------CeEEEEEcCCeEEEEECCCCc
Q 008393 498 -------GNKFHSCVFHPTY----------PSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 498 -------~~~i~~~~~sp~~----------~~l~~~~~dg~I~iwd~~~~~ 531 (567)
...|.+++|+|++ ++|++++.|+.|++||+.+++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998763
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-32 Score=274.27 Aligned_cols=248 Identities=13% Similarity=0.202 Sum_probs=220.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-----Cc
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-----KT 352 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~ 352 (567)
+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.+ +.
T Consensus 65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 3556778999999999999999999999999999999999999999888 88899999999999999999999 99
Q ss_pred EEEEEcCCCCc----------eeEEeccCCC--cEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEEEeC---Cee
Q 008393 353 VRVWDADNPGY----------SLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKG---GTA 416 (567)
Q Consensus 353 I~iwd~~~~~~----------~~~~~~~h~~--~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~~~~---~~~ 416 (567)
|++||+..... .+..+..|.. .+.+++|+|++.. +++++.||.|++||+.+ ...+..+.. .+.
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 99999976332 3445556666 9999999999775 55899999999999998 677777653 578
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---------------eEEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------------SVRVWT 481 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---------------~I~iwd 481 (567)
.++|+|++..+++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++.+ .|++||
T Consensus 223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred EEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 89999999999999999999999999999988887 77899999999999999998866 489999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
+.++ ..+..+..|...|.+++|+|++++|++++.||.|++|++.++.
T Consensus 302 ~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 302 KIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 9776 6788889999999999999999999999999999999998654
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.3e-33 Score=282.12 Aligned_cols=253 Identities=18% Similarity=0.238 Sum_probs=213.8
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
+.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.... +..|...|.+++|+|++++|++++.|+.|++
T Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 36677889999999999999999999999999999999988875544 4679999999999999999999999999999
Q ss_pred EEcCCCCc---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC------------------CCeeeEEEe--
Q 008393 356 WDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN------------------NGSCTRVFK-- 412 (567)
Q Consensus 356 wd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~------------------~~~~~~~~~-- 412 (567)
||++.... ......+|...|.+++|+|++. ++++++.|+.|++||++ .++.+..+.
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 99987442 2334467899999999999876 55589999999999954 567777764
Q ss_pred -CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCC--CC---
Q 008393 413 -GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS--GS--- 486 (567)
Q Consensus 413 -~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~--~~--- 486 (567)
..+..++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|+++.++.|++|++.. +.
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEE
Confidence 357889999999999999999999999999999999999999999999999999999888333999999987 21
Q ss_pred --------------------------CCceE------EEe-ecCCCceEEEEEe-CCC---CeEEEEEcCCeEEEEECCC
Q 008393 487 --------------------------EGECV------HEL-SCNGNKFHSCVFH-PTY---PSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 487 --------------------------~~~~i------~~~-~~~~~~i~~~~~s-p~~---~~l~~~~~dg~I~iwd~~~ 529 (567)
..... ..+ .+|...|.+++|. +++ .+|++++.||.|++||+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 00111 223 3788999999866 666 8999999999999999876
Q ss_pred Cc
Q 008393 530 NK 531 (567)
Q Consensus 530 ~~ 531 (567)
++
T Consensus 362 ~~ 363 (372)
T 1k8k_C 362 LE 363 (372)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=267.20 Aligned_cols=242 Identities=19% Similarity=0.331 Sum_probs=209.8
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.+|...|++++|+|++++||+|+.||.|++||+++++.+..+.+|...+.++.+. +..|++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCC
Confidence 356788999999999999999999999999999999999999999999998877664 569999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----EE---EeCCeeEEEEecCCCEEEE---EE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RV---FKGGTAQMRFQPHLGRYLA---AA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~----~~---~~~~~~~~~~~~~~~~l~~---~~ 431 (567)
...+..+.+|...+..+.|.+++.. +++++.|+.|++||+++++.. .. ..+.+..+.+.+.+..++. ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCE-EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 7888889999999999999999775 559999999999999886532 22 2346778889988776543 33
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.++.|++||........... +...+..++|++++..+++++ .| .|++||++++ +++..+.+|...|++++|+|
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 47899999999988776655 667899999999999888765 56 8999999876 78889999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCC
Q 008393 509 TYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
++++|++++.|++|+|||+.+.
T Consensus 295 dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 295 DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TSSCEEEEETTTEEEEECCSCC
T ss_pred CCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999764
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-33 Score=289.11 Aligned_cols=260 Identities=16% Similarity=0.202 Sum_probs=201.5
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---eeeeecccCccEEEEEECCCCC
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
+++|+...+ .++.+..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|+++
T Consensus 35 i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (377)
T 3dwl_C 35 VELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED 113 (377)
T ss_dssp BCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS
T ss_pred EEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC
Confidence 444444322 124566788999999999999999999999999999999999877 6777889999999999999999
Q ss_pred eEEEEeCCCcEEEEEcCCCCc--eeEEecc-CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------------
Q 008393 343 RLATSSFDKTVRVWDADNPGY--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--------------- 404 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~--~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~--------------- 404 (567)
+|++++.|+.|++||+++... ....+.+ |...|.+++|+|++. ++++++.|+.|++||+..
T Consensus 114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 999999999999999987432 4667777 999999999999976 566999999999999853
Q ss_pred ---CeeeEEE--eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE----EEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 405 ---GSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 405 ---~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
++++..+ ...+.+++|+|++..+++++.|+.|++||+++++. +..+.+|...|.+++|+|++++|++++.+
T Consensus 193 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 193 LPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp CCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred cchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 3334333 23578899999999999999999999999999876 77888999999999999999999999888
Q ss_pred eEEEEeCCCCCC---------------------------C---------ceEEE-------------eecCCCceEEEEE
Q 008393 476 SVRVWTVGSGSE---------------------------G---------ECVHE-------------LSCNGNKFHSCVF 506 (567)
Q Consensus 476 ~I~iwd~~~~~~---------------------------~---------~~i~~-------------~~~~~~~i~~~~~ 506 (567)
.+.+|+...... . ..+.. ...|...|.++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~ 352 (377)
T 3dwl_C 273 SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP 352 (377)
T ss_dssp SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE
T ss_pred cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec
Confidence 666887752210 0 00000 1127888999997
Q ss_pred eCCCC----eEEEEEcCCeEEEEEC
Q 008393 507 HPTYP----SLLVIGCYQSLELWNM 527 (567)
Q Consensus 507 sp~~~----~l~~~~~dg~I~iwd~ 527 (567)
.+... .|++++.||.|+|||+
T Consensus 353 ~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 353 YAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEETTEEEEEEEEETTSEEEEECC
T ss_pred cCCCCCceEEEEeecCCCcEEEecC
Confidence 66543 5999999999999986
No 91
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.2e-32 Score=276.99 Aligned_cols=275 Identities=15% Similarity=0.184 Sum_probs=217.0
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd 357 (567)
.+..+..|.+.|+|++|+|||++||+|+.++ ++||++++++.......+ .+..+.|.++++++ ++++.|++|+|||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3445688999999999999999999998665 789999988776654433 47888899888877 5677889999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCCeeEEEEecCCCEEEEE--ECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGTAQMRFQPHLGRYLAA--AAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg 434 (567)
+.+ +..+..+. |...|.+++|+++. ++ ++ .|+.|++||+.++ +.+..+......+++++ ..++++ +.+|
T Consensus 88 ~~~-~~~~~~~~-~~~~v~~v~~~~~~--~~-~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 88 DVK-KQDVSRIK-VDAPVKDLFLSREF--IV-VS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp TTT-TEEEEEEE-CSSCEEEEEECSSE--EE-EE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTT
T ss_pred CCC-CcEEEEEE-CCCceEEEEEcCCE--EE-EE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCc
Confidence 988 66667666 67799999998762 33 33 3889999999998 66665555445566777 566664 6689
Q ss_pred eEEEEECCCCe----------------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e-EEEEeCCCCCCCceEEEee-
Q 008393 435 VVSILDAETQA----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELS- 495 (567)
Q Consensus 435 ~I~i~d~~~~~----------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~-I~iwd~~~~~~~~~i~~~~- 495 (567)
.|++||++++. ++..+.+|...|.+++|+|+|++|++++.| + |++||++++ +++..+.
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~ 236 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRR 236 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEEC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEc
Confidence 99999999865 267889999999999999999999999999 8 999999876 6778887
Q ss_pred c-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE---Eec---------------------cccCCeeEEEEecC
Q 008393 496 C-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---------------------AHEGLIAALAVSTE 550 (567)
Q Consensus 496 ~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~---------------------~h~~~V~~l~~spd 550 (567)
+ |...|.+++|+|++++|++++.|+.|++||+..+... .+. .+......++|+++
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 4 8999999999999999999999999999999765321 110 11223477999999
Q ss_pred CCEEEEEECCCcEEEcC
Q 008393 551 TGYVASASHDKFVKLWK 567 (567)
Q Consensus 551 g~~l~s~s~Dg~I~iWd 567 (567)
+++|++++.||.+++|+
T Consensus 317 ~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 99999999999999985
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=266.22 Aligned_cols=258 Identities=17% Similarity=0.259 Sum_probs=224.5
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~f 337 (567)
..|+.+++|+...+ +....+..|...|.+++|+|++++|++|+.||.|++|++... +.+..+.+|...|.++.|
T Consensus 36 ~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (313)
T 3odt_A 36 SRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF 112 (313)
T ss_dssp ETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred EcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence 35667899998665 566778899999999999999999999999999999998654 667888899999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----C
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G 413 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~ 413 (567)
++++|++++.||.|++|| . ...+..+..|...|.+++|.+....++++++.|+.|++|| ..+....+. .
T Consensus 113 --~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~ 185 (313)
T 3odt_A 113 --QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND 185 (313)
T ss_dssp --ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS
T ss_pred --cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc
Confidence 577999999999999999 2 6677888899999999999984345667999999999999 444555444 3
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+..++|++++. +++++.++.|++||+++++.+..+.+|...|.+++|+|++ .|++++.| .|++||++++ +.+.
T Consensus 186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~ 260 (313)
T 3odt_A 186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG---SLKQ 260 (313)
T ss_dssp CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC---CEEE
T ss_pred cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC---ceeE
Confidence 578899999877 9999999999999999999999999999999999999999 57788888 9999999876 6788
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 534 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 534 (567)
.+..+...+.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 261 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 8888999999999999998 7789999999999999877653
No 93
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.5e-31 Score=278.80 Aligned_cols=296 Identities=9% Similarity=0.061 Sum_probs=246.2
Q ss_pred CccceeccCC-ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee-----eecccCccEEEEEEC
Q 008393 265 GGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFS 338 (567)
Q Consensus 265 ~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~-----~l~~h~~~V~~i~fs 338 (567)
.+++|..... ..++.+..+..+. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+
T Consensus 100 ~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 100 NEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP 178 (433)
T ss_dssp TTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG
T ss_pred ceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc
Confidence 3455554331 2345566666554 45599999988888888889999999999998887 455889999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--Cee
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTA 416 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~ 416 (567)
+++.++++++.|+.|++||+++ +..+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.. ...
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 257 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR 257 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE
T ss_pred CCCEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce
Confidence 9999999999999999999987 6677788889999999999999998887888899999999999998877654 467
Q ss_pred EEEEecCCCEEEEEE--------CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEE-EEEeCC-eEEEEeCCCCC
Q 008393 417 QMRFQPHLGRYLAAA--------AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~--------~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~d-~I~iwd~~~~~ 486 (567)
.++|+|++..+++++ .|+.|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.+ .|++||+.++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~- 335 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK- 335 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-
Confidence 889999999999888 47899999999998776653 55688999999999755 555667 9999999865
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEc---------------CCeEEEEECCCCcEEEeccccCCeeEEEEecCC
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---------------YQSLELWNMSENKTMTLTAHEGLIAALAVSTET 551 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~---------------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg 551 (567)
+.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++......+...+.+++|+|++
T Consensus 336 --~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 412 (433)
T 3bws_A 336 --KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDN 412 (433)
T ss_dssp --EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred --cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCC
Confidence 4555554 5677899999999999998887 469999999999888555556789999999999
Q ss_pred CEEEEEEC-CCcEEEcC
Q 008393 552 GYVASASH-DKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~-Dg~I~iWd 567 (567)
++|++++. |+.|++|+
T Consensus 413 ~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEE
Confidence 99998875 99999996
No 94
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=275.52 Aligned_cols=323 Identities=15% Similarity=0.228 Sum_probs=225.3
Q ss_pred cCeEEEec-CCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceee
Q 008393 205 KPLMMFGT-DGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 280 (567)
Q Consensus 205 ~~~~~~~~-dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 280 (567)
...+.|+| +|..+++. +.+++||..+++....+..... .....
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------------------------------~~~~~ 92 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV---------------------------------CSIGR 92 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE---------------------------------EEECT
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc---------------------------------ccccc
Confidence 34578888 88876663 4568999887643221110000 00001
Q ss_pred eeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC---CCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~---~~~l~s~s~dg~I~iw 356 (567)
....+|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++|
T Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 93 DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred cccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 12356999999999999 78899999999999999999999888877 7778999999985 4499999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEE------------------eCCeeE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF------------------KGGTAQ 417 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~------------------~~~~~~ 417 (567)
|+.+ +..+..+.+|...|.+++|+|++..++++++.||.|++||++++. ++..+ ...+..
T Consensus 172 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 172 DLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp ESSS-SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred eCCC-cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 9997 667788899999999999999998888899999999999998765 33322 345788
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC------CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceE
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i 491 (567)
++|+|++..+++++.|+.|++||+++++....+..+. .....+.....+.+++++..+.|++||+.++ ..+
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~ 327 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQI 327 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEE
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cce
Confidence 9999999999999999999999999987655443321 1122222333444444444449999999876 788
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEec-CCCEEEEEECCCcEEEcC
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iWd 567 (567)
..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+......... ..+.+ ....+.+++.|+.+++|+
T Consensus 328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 889999999999999999999999999999999999998776332222222 22333 334566777899999995
No 95
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-32 Score=287.29 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=200.5
Q ss_pred eeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 280 ANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++........ .+...+.+++|++++.+|++|+.||.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 345678999999999998 78999999999999999998765544443 344567899999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eCCeeEEEEecCCCEEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ 430 (567)
|++. ..+..+.+|...|.+++|+|++..++++|+.|+.|++||+++.+....+ ...+.+++|+|++..|+++
T Consensus 237 d~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 237 NMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp ESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred ccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 9974 4567788999999999999999989999999999999999887654332 3467889999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCC------CeeEEEEcCCCCEEEEEe------------CC-eEEEEeCCCCCCCceE
Q 008393 431 AAENVVSILDAETQACRLSLQGHTK------PIDSVCWDPSGELLASVS------------ED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~------~V~~l~~sp~g~~l~s~s------------~d-~I~iwd~~~~~~~~~i 491 (567)
+.|+.|++||+.++.....+..|.. .+..+.|++++.+++++. .+ .|++||..++ ..+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~ 391 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMM 391 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEE
Confidence 9999999999999988877776643 234567888777777664 23 6999999877 555
Q ss_pred EEee-cCCCceEEE-EEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 492 HELS-CNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 492 ~~~~-~~~~~i~~~-~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
..+. .|...|.++ +|+|+|.+|++++ |+.|+|||+++++.
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 5553 567777776 6999999887764 88999999998764
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=305.95 Aligned_cols=248 Identities=21% Similarity=0.331 Sum_probs=213.4
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iw 356 (567)
..+.+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999998 66788889999999999999988 8999999999999999
Q ss_pred EcCCCCc--eeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGY--SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~--~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (567)
|+.+ +. .+..+.+|...|.+++|+|+ +. ++++|+.||.|++||++++....
T Consensus 83 d~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~----------------------- 137 (753)
T 3jro_A 83 KEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS----------------------- 137 (753)
T ss_dssp EEET-TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC-----------------------
T ss_pred ECCC-CcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc-----------------------
Confidence 9987 43 66778889999999999998 55 56699999999999998753221
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-------------CCCEEEEEeCC-eEEEEeCCCCCCC-ceEEEeecC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSCN 497 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-------------~g~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~~ 497 (567)
...+.+|...|.+++|+| ++.+|++++.| .|++||++++... ..+..+..|
T Consensus 138 --------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 138 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp --------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred --------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 113456888999999999 58999999999 9999999876432 566778889
Q ss_pred CCceEEEEEeCC---CCeEEEEEcCCeEEEEECCCCc------EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 GNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK------TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...|.+++|+|+ +.+|++++.||.|++||+.++. ......|...|++++|+|++++|++|+.||.|+|||
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 999999999999 8999999999999999999873 224456889999999999999999999999999996
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-31 Score=277.51 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=220.6
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---eeeeecc-------------------------------------
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEE------------------------------------- 327 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---~~~~l~~------------------------------------- 327 (567)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999976666 58899999999988 5555543
Q ss_pred -----------------cCccEEEEEECCCCCeE-EEEeCCCcEEEEEcC--CCCceeEEec--cCCCcEEEEEEcCCCC
Q 008393 328 -----------------HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDAD--NPGYSLRTFM--GHSASVMSLDFHPNKD 385 (567)
Q Consensus 328 -----------------h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~--~~~~~~~~~~--~h~~~V~~l~~~p~~~ 385 (567)
|...|++++|+|++++| ++++.||.|+|||+. + +..+..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 899999999999998 5 55666665 5778999999999986
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeE-------EEeCCeeEEEEecC---CCEEEEEECCCeEEEEECCCCeEEEE-ecCCC
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTR-------VFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQACRLS-LQGHT 454 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~ 454 (567)
. |++++.||.|++|++.++.... .....+.+++|+|+ +..+++++.|+.|++||+++++.+.. +.+|.
T Consensus 163 ~-l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 T-VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp E-EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred E-EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 5 4588999999999998876442 33456889999999 88999999999999999999988777 56899
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-------------------------cCCCceEEEEEeC
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------------------------CNGNKFHSCVFHP 508 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-------------------------~~~~~i~~~~~sp 508 (567)
..|.+++|+ ++++|++++.| .|++||+.++ +++..+. .....+..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 99999999999 9999999887 4454444 2345689999999
Q ss_pred CCCeEEEEE-cCCeEEEEEC--CCC---cEE-EeccccCCeeEEEEecCCCEEEEEEC-------CCcEEEc
Q 008393 509 TYPSLLVIG-CYQSLELWNM--SEN---KTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLW 566 (567)
Q Consensus 509 ~~~~l~~~~-~dg~I~iwd~--~~~---~~~-~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iW 566 (567)
++++|++++ .++.|++|++ .++ ..+ .+..| +.|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 333 45566 889999999964 4444432 4557777
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.7e-31 Score=277.73 Aligned_cols=258 Identities=20% Similarity=0.414 Sum_probs=207.8
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD 239 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE
T ss_pred eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe
Confidence 355667899999999999 788999999999999999999999999999999999999974 5999999999999999
Q ss_pred cCCCCce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEEC
Q 008393 358 ADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 358 ~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 432 (567)
+.+.... ...+.+|...|.+++|. +. ++++|+.||.|++||+++++.+..+.++ +.++.+ ++..+++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~ 314 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 314 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC
Confidence 9874322 26778999999999993 44 6669999999999999999999888754 455555 5789999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC------CceEEEeecCCCceEEEE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCV 505 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~------~~~i~~~~~~~~~i~~~~ 505 (567)
|+.|++||+++++++..+.+|...|.+++| ++.+|++++.| .|++||+.++.. ..++..+..|...|.+++
T Consensus 315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 392 (435)
T 1p22_A 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 392 (435)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE
Confidence 999999999999999999999999999998 78899999999 999999976532 127888899999999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
| ++.+|++++.||.|++||+.+...........++.++.|.
T Consensus 393 ~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 393 F--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp E--CSSCEEECCSSSEEEEEC----------------------
T ss_pred e--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 9 7888999999999999999887765444444455555554
No 99
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-31 Score=273.44 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=191.8
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEE-----------eCCCcEEEEeCCCCeeee----e-----ecccCccEEEEEECCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATG-----------GHDKKAVLWHTDTLKSKT----N-----LEEHSSLITDVRFSPSM 341 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg-----------~~dg~I~vwd~~~~~~~~----~-----l~~h~~~V~~i~fsp~~ 341 (567)
.|.+|...|.|++++ ++.+++| +.|+.|++|++.+..... . ...+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 467888888888775 4466654 457889999986543221 1 12345679999999999
Q ss_pred CeEEEEe--CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CC
Q 008393 342 PRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GG 414 (567)
Q Consensus 342 ~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~ 414 (567)
++|++++ .|++|+|||+.+ ...+..+. |...|.+++|+|++.. +++++ ++.+++|+..++..+.... ..
T Consensus 146 ~~la~as~~~d~~i~iwd~~~-~~~~~~~~-~~~~V~~v~fspdg~~-l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSD-LTEKFEIE-TRGEVKDLHFSTDGKV-VAYIT-GSSLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSSE-EEEEC-SSCEEEEETTTCCEEEEECCCCTTEE
T ss_pred CEEEEEECCCCCEEEEeECCC-CcEEEEeC-CCCceEEEEEccCCce-EEecc-ceeEEEEEeccCcceeeeecCCCCCC
Confidence 9987654 689999999998 66666664 7788999999999874 54776 5567788877777654432 23
Q ss_pred eeEEEEecCCCEEEEEECCC----eEEEEECCCCeE----EEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAEN----VVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg----~I~i~d~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
+..++|+|++..+++++.++ .+.+||+..... ...+.+|...|++++|+|+|++||+|+.| .|+|||+.++
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 67889999999999998876 688899877643 35677899999999999999999999999 9999999876
Q ss_pred CCCceEEEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 486 SEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 486 ~~~~~i~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+++..+ .+|...|++++|+||+++|++++.|++|+|||+..+
T Consensus 302 ---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 ---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 677764 689999999999999999999999999999999654
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-31 Score=273.02 Aligned_cols=249 Identities=11% Similarity=0.196 Sum_probs=207.1
Q ss_pred EEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEE
Q 008393 313 LWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 313 vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~ 389 (567)
+|++.+.+....+.+|...|++++|+|++ ++|++|+.||.|+|||+.+ ......+. +|...|.+++|+|++..+++
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 34456677788889999999999999999 8999999999999999997 44444443 69999999999996566778
Q ss_pred EEeCCCcEEEEECCCCeeeEEEe------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc
Q 008393 390 SCDGDGEIRYWSINNGSCTRVFK------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463 (567)
Q Consensus 390 s~~~dg~I~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s 463 (567)
+++.|+.|++||+.+. .+..+. ..+.+++|+|++..+++++.|+.|++||+ +++.+..+.+|...|.+++|+
T Consensus 136 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN 213 (383)
T ss_dssp EEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred EEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence 9999999999999964 444443 34789999999999999999999999999 577888999999999999999
Q ss_pred CCCC-EEEEEeCC-eEEEEeCCCCCC-CceEEEeecCCCceEEEEEeC-CCCeEEEEEcCCeEEEEECCCCcEE-Eeccc
Q 008393 464 PSGE-LLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAH 538 (567)
Q Consensus 464 p~g~-~l~s~s~d-~I~iwd~~~~~~-~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h 538 (567)
|++. +|++++.| .|++||+++... ..++..+ .|...+.+++|+| ++.+|++++.|+.|++||+.+++.. .+..|
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 9999 99999999 999999987543 2445545 6899999999999 9999999999999999999987654 33333
Q ss_pred -------cC----------CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 539 -------EG----------LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 539 -------~~----------~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. .+..++|+|++++ +++.||.|+|||
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence 23 3344666666666 677899999996
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-31 Score=279.81 Aligned_cols=249 Identities=18% Similarity=0.363 Sum_probs=213.9
Q ss_pred eeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCC----------CeeeeeecccCccEEEEEECCCCC-eEEEEe
Q 008393 281 NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMP-RLATSS 348 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~----------~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s 348 (567)
.....|.+.|++++|+|+ +.+||+++.||.|++||+.+ .+....+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455689999999999997 78999999999999999986 678888999999999999999988 999999
Q ss_pred CCCcEEEEEcCCCCc------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEec
Q 008393 349 FDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 422 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (567)
.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++..
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------------- 266 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------------- 266 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------------
Confidence 999999999987322 14567789999999999997777888999999999999986531
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 423 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
.+.+..+..|...|++++|+|++. +|++++.| .|++||+++.. ..+..+..|...
T Consensus 267 ---------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~ 323 (430)
T 2xyi_A 267 ---------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDE 323 (430)
T ss_dssp ---------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSC
T ss_pred ---------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCC
Confidence 012224456889999999999887 78899999 99999998642 467778889999
Q ss_pred eEEEEEeCCCC-eEEEEEcCCeEEEEECCC--------------CcE-EEeccccCCeeEEEEecCCC-EEEEEECCCcE
Q 008393 501 FHSCVFHPTYP-SLLVIGCYQSLELWNMSE--------------NKT-MTLTAHEGLIAALAVSTETG-YVASASHDKFV 563 (567)
Q Consensus 501 i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~--------------~~~-~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~I 563 (567)
|.+++|+|++. +|++++.|+.|+|||+.. ... ....+|...|++++|+|++. +|++++.||.|
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence 99999999996 588899999999999987 133 36678999999999999999 89999999999
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
+||+
T Consensus 404 ~iw~ 407 (430)
T 2xyi_A 404 QVWQ 407 (430)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 9996
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-31 Score=276.23 Aligned_cols=268 Identities=15% Similarity=0.207 Sum_probs=221.8
Q ss_pred CCCCCccceeccCCcc-ceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCcc
Q 008393 261 PRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSL 331 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~ 331 (567)
..++.+++|+..+... ...+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++ +.+..+.+|...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~ 133 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence 4466788998865432 245667889999999999999 9999999999999999999987 667889999999
Q ss_pred EEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEe--ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 332 ITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 332 V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
|.+++|+|++ .+|++++.||.|++||+.+ +..+..+ .+|...|.+++|+|++..+ ++++.|+.|++||+++++.+
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEEEEeCCCCcee
Confidence 9999999998 6999999999999999998 6777788 7899999999999997754 58999999999999999998
Q ss_pred EEE-eCC----eeEEEEecCCCEEEEE---ECCCeEEEEECCCCeE-EEEe-cCCCCCeeEEEEcCCCCEEEEEe-CC-e
Q 008393 409 RVF-KGG----TAQMRFQPHLGRYLAA---AAENVVSILDAETQAC-RLSL-QGHTKPIDSVCWDPSGELLASVS-ED-S 476 (567)
Q Consensus 409 ~~~-~~~----~~~~~~~~~~~~l~~~---~~dg~I~i~d~~~~~~-~~~~-~~h~~~V~~l~~sp~g~~l~s~s-~d-~ 476 (567)
..+ ..+ +..+.|++++..++++ +.++.|++||+++++. +... ..|...|.+++|+|++++|++++ .| .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 887 332 5789999997777777 5799999999998653 2222 24778899999999999997554 57 9
Q ss_pred EEEEeCCCCCC-CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 477 VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 477 I~iwd~~~~~~-~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.++...
T Consensus 292 i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999987643 22333333 5688999999999987664 5669999999887653
No 103
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-31 Score=261.26 Aligned_cols=224 Identities=21% Similarity=0.305 Sum_probs=174.9
Q ss_pred eeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCC--CCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~ 352 (567)
.+..+.+|.++|.+++|++ ++++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.
T Consensus 45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 4567889999999999986 48999999999999999998874 56678889999999999997 889999999999
Q ss_pred EEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE
Q 008393 353 VRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 353 I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (567)
|++||+.+... ....+.+|...|.+++|+|++.... +. . ...+++..+++++
T Consensus 125 v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~------~~--------~-------------~~~~~~~~l~sgs 177 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED------GE--------H-------------NGTKESRKFVTGG 177 (297)
T ss_dssp EEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------------------------------------CCEEEEEE
T ss_pred EEEEEecCCCceeeeeeecccCccceEeecCCccccc------cc--------C-------------CCCCCcceEEEEc
Confidence 99999987432 2466789999999999999742100 00 0 0011234555666
Q ss_pred CCCeEEEEECCCCe----EEEEecCCCCCeeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEe--ecCCCce
Q 008393 432 AENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHEL--SCNGNKF 501 (567)
Q Consensus 432 ~dg~I~i~d~~~~~----~~~~~~~h~~~V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~--~~~~~~i 501 (567)
.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.| +|+|||++..........+ ..+...+
T Consensus 178 ~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v 257 (297)
T 2pm7_B 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (297)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE
Confidence 66666666655443 456788999999999999985 899999999 9999999764322222233 4567889
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
.+++|+|++++|++++.|+.|+||+...
T Consensus 258 ~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 258 WRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999999999763
No 104
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=287.03 Aligned_cols=261 Identities=16% Similarity=0.230 Sum_probs=215.7
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee-cccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCC---CC--ceeE
Q 008393 294 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN---PG--YSLR 366 (567)
Q Consensus 294 ~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l-~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~---~~--~~~~ 366 (567)
.|+++++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+ .. ....
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888887765 387 467888888 89999999999999 999999999999999999865 22 1123
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCeeeEEEeC---------------CeeEEE--EecCCCE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFKG---------------GTAQMR--FQPHLGR 426 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~---~~~~~~~~~~---------------~~~~~~--~~~~~~~ 426 (567)
.+ +|...|.+++|+|++. ++++++.||.|++||+. +++....+.. .+.++. +++++..
T Consensus 107 ~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 33 5999999999999876 55599999999999995 5555443331 123333 4577889
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFH 502 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~ 502 (567)
+++++.|+.|++||+++++.+..+.+ |...|++++|+|++++|++++.| .|++||++++ .++..+. .+...|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceE
Confidence 99999999999999999999999988 88999999999999999999999 9999999875 6777765 6777899
Q ss_pred EEEEeC----CCCeEEEEEcCCeEEEEECCCCcEE-Eecc--------------------------ccCCeeEEEEecCC
Q 008393 503 SCVFHP----TYPSLLVIGCYQSLELWNMSENKTM-TLTA--------------------------HEGLIAALAVSTET 551 (567)
Q Consensus 503 ~~~~sp----~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--------------------------h~~~V~~l~~spdg 551 (567)
+++|+| ++.+|++++.|+.|++||+.+++.. .+.+ |...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 996654 6779999999999999999988755 2222 66779999999 78
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
++|++|+.||.|++||
T Consensus 341 ~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 341 KILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred eEEEecCCCCeEEEEE
Confidence 8999999999999996
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=284.21 Aligned_cols=305 Identities=10% Similarity=0.097 Sum_probs=231.8
Q ss_pred cCeEEEecCCCccccCCCc-eeeeCCCcchhhcccccccCCCCCCceEEe-eccCCCCCCCCCccceeccCCccceeeee
Q 008393 205 KPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPRDAGGRGMDVSQGFSFKEANS 282 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~~~-~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 282 (567)
...+.|+|||...++++.. .+=|...++ .+. .....+... +.+++ ..+.|+++++. ....
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~d~~~~~---~l~------gh~~~v~~V~FsPdg------~~~~~~~~~~~---~~~~ 79 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIGQPKYAK---DIN------CNSKNLFHVKEFPLE------FENKLDFELAQ---QNGL 79 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEEEECCCS---CCS------SBGGGTEEEEEECCC------CCCTTTTSCCC---SSCS
T ss_pred EEEEEECCCCCEEEEEcCCceeecccccc---eec------CCCccEEEEEECCCC------CcceEEEEeCC---CceE
Confidence 4568999999998887655 222444332 221 111222222 33333 34455554432 1122
Q ss_pred ec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc-----cEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 283 VR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 283 l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~-----~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+. .|...|.+++|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+||
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 22 5588999999999999999999999999999654 666667 665 59999999999999999999999999
Q ss_pred EcCCCCc------eeEEe----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---EEEe----CCeeEEE
Q 008393 357 DADNPGY------SLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFK----GGTAQMR 419 (567)
Q Consensus 357 d~~~~~~------~~~~~----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~~~~----~~~~~~~ 419 (567)
|+.++.. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+..+... ..++ ..+..++
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9997432 35665 6788899999999997 457888999999999987742 3442 3478899
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEE--cCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW--DPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~--sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|+ +..+++++ ++.|++||+.+++......+|...|..++| +|++..|++++++ + ++|.+.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------- 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------- 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------------
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------------
Confidence 99 56666665 799999999999885444489999999999 9999999999989 7 999985
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
.+.++|++..++.. |+++++|+...+....+ .+...|.+++|+|||+.+|+++.
T Consensus 297 ------~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ------ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ------SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ------cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 14699999866664 89999999876664434 34677999999999999998874
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=293.45 Aligned_cols=253 Identities=10% Similarity=0.050 Sum_probs=196.5
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeee----eeecccCccEEEEEECCC------CCeEEEEeCCCcEEEEEcCCCCc---
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPS------MPRLATSSFDKTVRVWDADNPGY--- 363 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~----~~l~~h~~~V~~i~fsp~------~~~l~s~s~dg~I~iwd~~~~~~--- 363 (567)
|++++|++++.|++|+|||+.+++.. ..+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.....
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 34444555678899999999877643 446778899999999996 57999999999999999986321
Q ss_pred -------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe---CCeeEE--EEecCC-CEEEE
Q 008393 364 -------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQM--RFQPHL-GRYLA 429 (567)
Q Consensus 364 -------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---~~~~~~--~~~~~~-~~l~~ 429 (567)
....+.+|...|++++|++++ .|++|+.||+|++||++++. ....+. ..+.++ .|++++ ..+++
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 234778899999999999863 57799999999999999764 334444 456777 467776 78899
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCC--CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
++.|++|+|||++++++...+.+|.. .|.+++|+|++..|++++.| +|++||++++ .++..+.+|...|.+++|
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGV 405 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEEC
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEEe
Confidence 99999999999999877666666653 58899999999999999999 9999999876 566677889999999999
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEEEecc-----ccCCeeEEEEecCCCEE
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTMTLTA-----HEGLIAALAVSTETGYV 554 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-----h~~~V~~l~~spdg~~l 554 (567)
+|++++|++|+.|++|++||+..+....... +...|.+++|+|+++.+
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999987642212111 11247799999999855
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=274.27 Aligned_cols=264 Identities=10% Similarity=0.060 Sum_probs=211.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC--------Cce
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP--------GYS 364 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~--------~~~ 364 (567)
..+..++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.... ...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455678899999999999999999999888887 566888889988 999999999999977631 222
Q ss_pred eEEe-ccCCCcEEEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEECCCeEE
Q 008393 365 LRTF-MGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 365 ~~~~-~~h~~~V~~l~~~p--~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
+..+ .+|...|.+++|+| ++. ++++++.||.|++||+++++++..+.. .+.+++|+|++..+++++.|+.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 3333 36778999999999 866 556999999999999999998766532 478999999999999999999999
Q ss_pred EEECCCCeEE-EEecC-CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCce--EEEEEeCCCCeE
Q 008393 438 ILDAETQACR-LSLQG-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHPTYPSL 513 (567)
Q Consensus 438 i~d~~~~~~~-~~~~~-h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i--~~~~~sp~~~~l 513 (567)
+||+++++.+ ..+.. |...|.+++|+|+|.+|++++++.|++||+++......+..+..+...+ .+++|+|++++|
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 9999999877 78888 9999999999999999999996699999998875444343333333333 469999999999
Q ss_pred EEEEc-CCeEEEEECCCCcEE-EeccccCCeeEEEEec---CCCEEEEEECCCcEEEc
Q 008393 514 LVIGC-YQSLELWNMSENKTM-TLTAHEGLIAALAVST---ETGYVASASHDKFVKLW 566 (567)
Q Consensus 514 ~~~~~-dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iW 566 (567)
++++. ++.|++|++.+.... .. .++..++|.+ +...|++++.||.++++
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 99998 999999999765432 22 5567777877 77888888888888765
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=280.81 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=210.5
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-...|.+++|+|||+++|+++.|++|+ |...+ ..+++|...|.+++|+|+| .++.+.+|+.+. ..+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~--~~~ 79 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ--NGL 79 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS--SCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCC--ceE
Confidence 357889999999999999999999999 64444 4558999999999999998 566666665442 112
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-------CeeEEEEecCCCEEEEEECCCeEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
..+ .|...|.+++|+|+|..+ ++++.||.|++||... ++..+.. .+.+++|+|++..+++++.||.|++
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~L-As~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWM-AVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCE-EEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eec-CCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 222 468899999999998755 5899999999999654 4444432 2778999999999999999999999
Q ss_pred EECCCCe-------EEEEe----cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-ecCCCceEEEE
Q 008393 439 LDAETQA-------CRLSL----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCV 505 (567)
Q Consensus 439 ~d~~~~~-------~~~~~----~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~ 505 (567)
||+.++. .+.++ .+|...|.+++|+|+| +++++.| .|++||+..+.......++ ..|...|.+++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9999885 35666 6788899999999999 7777778 9999999876432344556 36778999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEEE-eccccCCeeEEEE--ecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAV--STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iWd 567 (567)
|+ +.+|++++ ++.|++||+.+++... ..+|...|..++| +|++..|+++++||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 6999999999998854 4489999999999 999999999999999 8884
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=279.29 Aligned_cols=282 Identities=13% Similarity=0.215 Sum_probs=222.7
Q ss_pred cCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 205 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
...+.|+++|..+++. +.+++||..++..... .....++...
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------------------------~~~~~~~~~~ 75 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------------------------HSRGEYNVYS 75 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------------------------CCCCCEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------------------------ccccceeEec
Confidence 4468899999887764 4568898876532100 0012345667
Q ss_pred eeccCC------------CCeEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCeee-------------------------
Q 008393 282 SVRAST------------SKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSK------------------------- 322 (567)
Q Consensus 282 ~l~~h~------------~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~~~~~~------------------------- 322 (567)
.+.+|. +.|.+++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 76 ~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (447)
T 3dw8_B 76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155 (447)
T ss_dssp EEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCC
T ss_pred ccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEec
Confidence 788888 889999999998 79999999999999998764432
Q ss_pred --------------ee-ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE-------EeccCCCcEEEEEE
Q 008393 323 --------------TN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVMSLDF 380 (567)
Q Consensus 323 --------------~~-l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~ 380 (567)
.. +.+|...|.+++|+|++++|++| .|+.|++||+......+. .+.+|...|.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (447)
T 3dw8_B 156 VFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF 234 (447)
T ss_dssp EEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred cccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE
Confidence 12 46899999999999999999998 899999999985344444 25689999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCee----eEEEeC---------------CeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKG---------------GTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~~---------------~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
+|++..++++|+.||.|++||+++++. +..+.. .+.+++|+|++..+++++. +.|++||+
T Consensus 235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~ 313 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDL 313 (447)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEET
T ss_pred CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeC
Confidence 999856777999999999999999886 566654 5788999999999999888 99999999
Q ss_pred CC-CeEEEEecCCCCC---------------eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee---------
Q 008393 442 ET-QACRLSLQGHTKP---------------IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------- 495 (567)
Q Consensus 442 ~~-~~~~~~~~~h~~~---------------V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~--------- 495 (567)
++ ++++..+.+|... +..++|+|++++|++++.| .|++||+.++.. + .+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~ 389 (447)
T 3dw8_B 314 NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPR 389 (447)
T ss_dssp TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTT
T ss_pred CCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccc
Confidence 97 8888888887532 3349999999999999999 999999987632 2 111
Q ss_pred ------------------------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 496 ------------------------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 496 ------------------------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.....|..++|+|++++|++++.++ +++|..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 390 TVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2234688899999999888887765 8888654
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=3e-29 Score=257.71 Aligned_cols=260 Identities=12% Similarity=0.147 Sum_probs=218.6
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|++++| ++++.|+.|++||+.+ +..+..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-Cccce
Confidence 3678888999999999999999999987765 8999999999977 6677899999999987 66666666554 89999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEE-EEECCCeEEEEECCCCeEEEEecCCCC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTK 455 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h~~ 455 (567)
+|+|+++.+++++..++.|++||+.+++.+..+.. ....++|+|++..++ +++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 99999998888888889999999999998877764 467889999999884 5556899999999999998888765 4
Q ss_pred CeeEEEEcCCCCEE-EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE---cCCeEEEEECCCC
Q 008393 456 PIDSVCWDPSGELL-ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSEN 530 (567)
Q Consensus 456 ~V~~l~~sp~g~~l-~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~I~iwd~~~~ 530 (567)
.+.+++|+|++++| ++++.+ .|++||++++ ..+..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 57999999999987 455666 9999999876 4555544 456789999999999999998 6899999999998
Q ss_pred cEEEeccccCCeeEEEEecCCCEE-EEEECCCcEEEcC
Q 008393 531 KTMTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 567 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iWd 567 (567)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 877443334468999999999987 5678899999996
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=8.4e-29 Score=254.42 Aligned_cols=266 Identities=13% Similarity=0.167 Sum_probs=219.2
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.+..+++|+..++ +.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+
T Consensus 10 ~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 10 ESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp TTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred CCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence 4567899998877 4556666665 48999999999977 667789999999999999999888666 8999999999
Q ss_pred CCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeE
Q 008393 341 MPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQ 417 (567)
Q Consensus 341 ~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~ 417 (567)
+++|++++ .++.|++||+.+ +..+..+.. ...+.+++|+|+++.++++++.|+.|++||+.+++.+..+.. ....
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 162 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTS-NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCC-CeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence 99886554 679999999997 566666654 457899999999988878999999999999999998887764 4678
Q ss_pred EEEecCCCEEEE-EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe---CC-eEEEEeCCCCCCCceEE
Q 008393 418 MRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 418 ~~~~~~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~d-~I~iwd~~~~~~~~~i~ 492 (567)
++|+|++..+++ +..++.|++||+++++.+..+. +...+.+++|+|++++|++++ .+ .|++||+.++ +.+.
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~ 238 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA 238 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEE
Confidence 899999988854 4568999999999998887776 456789999999999998887 46 9999999876 5666
Q ss_pred EeecCCCceEEEEEeCCCCeEE-EEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
.+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++.. .+..|.
T Consensus 239 ~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 239 RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 66654 4578899999999885 4567899999999998876 444443
No 112
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.5e-30 Score=260.20 Aligned_cols=227 Identities=20% Similarity=0.296 Sum_probs=177.9
Q ss_pred eeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCC--CCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~ 352 (567)
.+..+++|.+.|.+++|++ ++++|++|+.|++|++||+.++ +....+.+|...|.+++|+|+ +.+|++|+.|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 4567889999999999986 4899999999999999999887 456778899999999999998 789999999999
Q ss_pred EEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEE
Q 008393 353 VRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 353 I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (567)
|++||+..... ....+.+|...|.+++|+|+... +. + .+...+. ....+..++++
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~~----~--~~~~~~~-------------~~~~~~~l~sg 185 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP----GS----L--IDHPSGQ-------------KPNYIKRFASG 185 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----------------CCSC-------------CCCCCCBEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCC----cc----c--ccccccc-------------CccccceEEEe
Confidence 99999987432 24556789999999999997421 00 0 0000000 01123466777
Q ss_pred ECCCeEEEEECCCC---eEEEEecCCCCCeeEEEEcCCC----CEEEEEeCC-eEEEEeCCCCCCC-ceEEEeecCCCce
Q 008393 431 AAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGNKF 501 (567)
Q Consensus 431 ~~dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g----~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~~~~~i 501 (567)
+.|+.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.| +|++|++.+.... .....+..+...|
T Consensus 186 s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v 265 (316)
T 3bg1_A 186 GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV 265 (316)
T ss_dssp BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE
T ss_pred cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE
Confidence 77777777777644 4566788999999999999986 899999999 9999999763211 1223445678899
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+++|+|++.+|++++.|+.|+||+..
T Consensus 266 ~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 266 WHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999999975
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=7e-31 Score=270.89 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-----eeecccCccEEEEEECC--------CCCeEEEEe
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSP--------SMPRLATSS 348 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-----~~l~~h~~~V~~i~fsp--------~~~~l~s~s 348 (567)
....|...+....+++++.+||+|+.|++|+|||+.++... ..+.+|.+.|++|+|+| ++++||+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 34456667777778888999999999999999999887643 34679999999999997 788999999
Q ss_pred CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEE
Q 008393 349 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 428 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (567)
.|++|+|||+.+ ...+..+.+|...|.+++|+|++..++++++.|+.|++||+++++........... .
T Consensus 164 ~D~tv~~Wd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~----- 232 (393)
T 4gq1_A 164 DDCTLIIWRLTD-EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----K----- 232 (393)
T ss_dssp TTSEEEEEEEET-TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C-----S-----
T ss_pred CCCeEEEEECCC-CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----c-----
Confidence 999999999987 55666777899999999999998888889999999999999988765443221000 0
Q ss_pred EEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc-CCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce-----
Q 008393 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF----- 501 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s-p~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i----- 501 (567)
...+.-++...........+|...|.++.|+ ++++.|++++.| .+++||+..+.... .+..+...+
T Consensus 233 ----~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 233 ----NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNL 305 (393)
T ss_dssp ----CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CC
T ss_pred ----cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEE
Confidence 0000111111112222345688999999987 799999999999 99999998763322 222222211
Q ss_pred -------------EEEEEeC-CCC-eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 502 -------------HSCVFHP-TYP-SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 502 -------------~~~~~sp-~~~-~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
..+.|++ .+. ++++++.|+.|++||+.+++.. ....|...|.+++|+|||++||++++||.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 1223333 333 4556677999999999988766 66788999999999999999999998875
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-29 Score=262.26 Aligned_cols=244 Identities=10% Similarity=0.029 Sum_probs=201.6
Q ss_pred eeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCC--CCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTD--TLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~--~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+|.+.|.+++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+|++++|++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 456788899999999999996 899999999999999 888888887 567899999999999999999999999999
Q ss_pred EcCCCCc---eeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEE
Q 008393 357 DADNPGY---SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRY 427 (567)
Q Consensus 357 d~~~~~~---~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l 427 (567)
++.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. ..+.+++|+ ++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 9987332 22367789999999999998 23466699999999999999998877633 457889999 99999
Q ss_pred EEEECCCeEEEEECCCCeEEEEecC-------------------------CCCCeeEEEEcCCCCEEEEEe-CC-eEEEE
Q 008393 428 LAAAAENVVSILDAETQACRLSLQG-------------------------HTKPIDSVCWDPSGELLASVS-ED-SVRVW 480 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~-------------------------h~~~V~~l~~sp~g~~l~s~s-~d-~I~iw 480 (567)
++++.|+.|++||+++++++..+.. ....|.+++|+|++++|++++ .+ .|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998888763 245789999999999999998 66 99999
Q ss_pred eC--CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-------CCeEEEEECC
Q 008393 481 TV--GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMS 528 (567)
Q Consensus 481 d~--~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-------dg~I~iwd~~ 528 (567)
++ ..+.....+..+..+ ..+.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 99 554444667777777 889999999954 4444433 3457777654
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.6e-29 Score=254.39 Aligned_cols=254 Identities=11% Similarity=0.151 Sum_probs=216.3
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeC-CCCeeeeeecc--cCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT-DTLKSKTNLEE--HSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~-~~~~~~~~l~~--h~~~V~~i~f 337 (567)
.|+.+++|+...+........+.+|...|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 345678899887764455667779999999999999999 9999999999999999 77755 77788 9999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCC--------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-Ceee
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCT 408 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~ 408 (567)
+| +.+|++++.|+.|++||+.+. ...+..+. |...|.+++|++++ +++++.|+.|++||+++ +...
T Consensus 110 ~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~ 184 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCC
T ss_pred CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCcccccc
Confidence 99 999999999999999998741 22334444 88999999999875 66899999999999998 5432
Q ss_pred --EE---EeCCeeEEEEec-CCCEEEEEECCCeEEEEECCCC------eEEEEecCCCC---------CeeEEEEcCCCC
Q 008393 409 --RV---FKGGTAQMRFQP-HLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTK---------PIDSVCWDPSGE 467 (567)
Q Consensus 409 --~~---~~~~~~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~---------~V~~l~~sp~g~ 467 (567)
.. ....+.+++|+| ++..+++++.++.|++||++.. +....+..|.. .|.+++|+|+++
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence 12 234678999999 9999999999999999999887 77778888765 999999999999
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcCCe-EEEEE
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQS-LELWN 526 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~-I~iwd 526 (567)
+|++++.| .|++||+.++ +.+..+..| ...|.+++ |++.+|++++.||. .+.|.
T Consensus 265 ~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99999999 9999999876 678888888 89999999 99999999999998 44444
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.3e-29 Score=249.93 Aligned_cols=252 Identities=18% Similarity=0.264 Sum_probs=185.6
Q ss_pred eeeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC---------eeeeeecccCccEEEEEECCC--CCeE
Q 008393 278 KEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPS--MPRL 344 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~---------~~~~~l~~h~~~V~~i~fsp~--~~~l 344 (567)
+....+.+|...|++++|+| |+++|++|+.||.|++||+.++ +.+..+..|...|.+++|+|+ +.+|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 45677889999999999999 6999999999999999999877 667888899999999999999 9999
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEe-------------ccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCee--
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTF-------------MGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC-- 407 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~-------------~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~-- 407 (567)
++++.||.|++||+.+.. .+..+ ..|...+.+++|+|+ ...++++++.|+.+.+|+...++.
T Consensus 128 ~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEEETTCEEEEEECSSTT-CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EEecCCCcEEEecCCChH-HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 999999999999998733 22221 268889999999997 344666899999998888888765
Q ss_pred eEEEe---CCeeEEEEecCC----CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----
Q 008393 408 TRVFK---GGTAQMRFQPHL----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----- 475 (567)
Q Consensus 408 ~~~~~---~~~~~~~~~~~~----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----- 475 (567)
+..+. ..+.+++|+|++ ..+++++.|+.|++||++.+........+...+....+.+....++.+..+
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 44443 457899999998 689999999999999999876655555444445555555555555554433
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.+.+|+. .....+..+..|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 287 ~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 287 KAELQSN---LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ----CCS---EEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred eeeeccc---ccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 3444443 334778888999999999999999999999999999999999987544
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=249.81 Aligned_cols=244 Identities=15% Similarity=0.265 Sum_probs=203.5
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE--CCCCCeEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f--sp~~~~l~s~s~dg~I~iwd~ 358 (567)
..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 5678899999999999999999999999999999999988776 5679999999999 899999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCE----EEE
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGR----YLA 429 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~----l~~ 429 (567)
.+ +..+..+..+. .+.++.+.++ .+++++.++.+++|+++......... .....+.+.+.... +++
T Consensus 159 ~~-~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 159 RS-SNPMMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SC-SSCSEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CC-CcEEEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 97 56667777554 6777777744 45578889999999998865443322 34556666655544 999
Q ss_pred EECCCeEEEEECCCC---eEEEEecCCCC------------CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 430 AAAENVVSILDAETQ---ACRLSLQGHTK------------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~---~~~~~~~~h~~------------~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
++.++.|++||++.. ..+..+.+|.. .|.+++|+|++++|++++.| .|++||+.++ .++..
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~ 310 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKT 310 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEE
T ss_pred ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEE
Confidence 999999999999987 56677777765 79999999999999999999 9999999876 78888
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeE---EEEECCCCcEE
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSL---ELWNMSENKTM 533 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I---~iwd~~~~~~~ 533 (567)
+..|...|.+++|+|++.+|++++.|+.. .+|+.+....+
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred ecCCCCCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 89999999999999999999999998744 44444444443
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.4e-28 Score=239.70 Aligned_cols=259 Identities=10% Similarity=0.008 Sum_probs=187.9
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-- 340 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~-- 340 (567)
+..+++|+..+++.++.+.++++|..+|..+.|.||-.-|++..-. + -+...|+.|+|+|+
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~--------~~~~~v~sla~spd~~ 124 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG---------N--------LEIREIRALFCSSDDE 124 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC---------S--------SSEEEEEEECC-----
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec---------c--------ccccceEEEEECCCcc
Confidence 3468999999999999999999999999999999987544433211 1 14456899999999
Q ss_pred --CCeEEEEeCCCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---EeCC
Q 008393 341 --MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGG 414 (567)
Q Consensus 341 --~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~---~~~~ 414 (567)
+.++++++.+ +++|++.+ ++.+.. ..+|...|..++|+|+| +.+.. +...
T Consensus 125 ~~~~~l~s~g~~--~~v~~l~~-g~lv~ss~~g~d~~V~~~~~s~dG---------------------~~~~s~~~~~~~ 180 (356)
T 2w18_A 125 SEKQVLLKSGNI--KAVLGLTK-RRLVSSSGTLSDQQVEVMTFAEDG---------------------GGKENQFLMPPE 180 (356)
T ss_dssp -CCEEEEEEEEE--EEEEEETT-TEEEEEESSSTTCEEEEEEECTTS---------------------CEEEEEEECCCS
T ss_pred ccccEEEeCCCe--EEEEecCC-CcEEEecccCCCCcEEEEEECCCC---------------------ceeeeeccCCCc
Confidence 8888888854 77887644 333333 23444444444444443 33322 2345
Q ss_pred eeEEEEec---CCCEEEEEECCCeEEEEECCCCeEEEEecCCC---CCeeEEEEcCCCCEE------------EEEeCC-
Q 008393 415 TAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSLQGHT---KPIDSVCWDPSGELL------------ASVSED- 475 (567)
Q Consensus 415 ~~~~~~~~---~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---~~V~~l~~sp~g~~l------------~s~s~d- 475 (567)
+..++|++ ++..+++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+.|
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 66778888 66888889999999999999999999998754 357778999999986 567788
Q ss_pred eEEEEeCCCCCCCceEEEe-----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCee-EEEEe
Q 008393 476 SVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA-ALAVS 548 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~-----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~~s 548 (567)
+|++||..++ +++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++.+ ++.+|...+. +++|+
T Consensus 261 tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 261 QLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp EEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred EEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 9999999876 444443 2444444444443 778999999999999999999987 6778887655 68999
Q ss_pred cCCCEEEEEECCCcEEEcC
Q 008393 549 TETGYVASASHDKFVKLWK 567 (567)
Q Consensus 549 pdg~~l~s~s~Dg~I~iWd 567 (567)
|||++|++|+.|++|||||
T Consensus 336 PDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SSSSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEec
Confidence 9999999999999999996
No 119
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=249.94 Aligned_cols=217 Identities=22% Similarity=0.331 Sum_probs=179.6
Q ss_pred eeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCC--CCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg 351 (567)
+.+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 456778899999999999987 9999999999999999999987 77888899999999999999 99999999999
Q ss_pred cEEEEEcCCCC-ceeEEeccCCCcEEEEEEcCC------------CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEE
Q 008393 352 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 418 (567)
Q Consensus 352 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~------------~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~ 418 (567)
.|++||+.... .....+.+|...|.+++|+|. ...++++++.|+.|++||++++...
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------- 195 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT---------- 195 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE----------
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc----------
Confidence 99999998742 344567789999999999995 1334556777777777776543211
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC---CCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---GELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
......+.+|...|.+++|+|+ +.+|++++.| .|++||++++........+
T Consensus 196 -------------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 250 (379)
T 3jrp_A 196 -------------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 250 (379)
T ss_dssp -------------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred -------------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee
Confidence 1233467789999999999999 8999999999 9999999876433333333
Q ss_pred --ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 495 --SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 495 --~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..+...+.+++|+|++.+|++++.||.|++|++..
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 33778899999999999999999999999999874
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.1e-28 Score=246.57 Aligned_cols=243 Identities=8% Similarity=0.032 Sum_probs=182.1
Q ss_pred EEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe
Q 008393 313 LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 313 vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~ 392 (567)
||++.+.+.+..+..|...|++++|+|++++|++|+.++ ++|||+++ ........ ...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQE--MRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEEE--CSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeeee--cCCeEEEEEcCCCCEEEEEEC
Confidence 566777777778889999999999999999999998876 78999986 33333322 234778888888888877888
Q ss_pred CCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEE
Q 008393 393 GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 393 ~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l 469 (567)
.|+.|++||+.+++++..+.. .+..+.++++ .+++ +.++.|++||+.++ +.+..+.. +...+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999998887764 4566677654 3433 45889999999987 65555543 444566777 566
Q ss_pred EEE--eCC-eEEEEeCCCCCCC------------c-eEEEeecCCCceEEEEEeCCCCeEEEEEcCCe-EEEEECCCCcE
Q 008393 470 ASV--SED-SVRVWTVGSGSEG------------E-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMSENKT 532 (567)
Q Consensus 470 ~s~--s~d-~I~iwd~~~~~~~------------~-~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-I~iwd~~~~~~ 532 (567)
+++ +.+ .|++||+.++... . ++..+.+|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 566 9999999875310 1 26778899999999999999999999999998 99999999987
Q ss_pred E-Eec-c-ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M-TLT-A-HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~-~~~-~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+ .+. + |...|.+++|+|++++|++++.|+.|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 555 4 999999999999999999999999999996
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=8.1e-27 Score=249.95 Aligned_cols=298 Identities=12% Similarity=0.095 Sum_probs=240.5
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC--CCCeeeeeecccCccEEEEEECC-
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSP- 339 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~--~~~~~~~~l~~h~~~V~~i~fsp- 339 (567)
+..+.+||..++ +.+..+..+.. +.+++|+|||++|++++.|+.|.+||+ .+++.+.++.. ...+..++|+|
T Consensus 158 d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~ 232 (543)
T 1nir_A 158 AGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKF 232 (543)
T ss_dssp GTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCS
T ss_pred CCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCC
Confidence 445778887766 45566663333 889999999999999999999999999 88999888884 45689999999
Q ss_pred ---CCCeEEEEeC-CCcEEEEEcCCCCceeEEecc----------C-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 340 ---SMPRLATSSF-DKTVRVWDADNPGYSLRTFMG----------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 340 ---~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
++++|++++. +++|.|||..+ .+++..+.. | ...+..+.+++++..++++...++.|.+||+.+
T Consensus 233 ~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 233 KGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp TTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred cCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999885 89999999987 666666653 2 237899999999999999999999999999998
Q ss_pred CeeeE--EEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC----CCCCeeEEEEcCC-CCEEEEEe-
Q 008393 405 GSCTR--VFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG----HTKPIDSVCWDPS-GELLASVS- 473 (567)
Q Consensus 405 ~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~----h~~~V~~l~~sp~-g~~l~s~s- 473 (567)
.+.+. .+. .....+.|+|++.++++++. ++.|.+||..+++++..+.. |.+....+ ++|+ +.+++++.
T Consensus 312 ~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 312 IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 76544 333 24567899999998887765 78999999999999888874 55444443 4676 66677765
Q ss_pred CC-eEEEEeCCCCCC----CceEEEeecCCCceEEEEEeCCCCeEEEEE-------cCCeEEEEECCCCcEE-Ee-----
Q 008393 474 ED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVIG-------CYQSLELWNMSENKTM-TL----- 535 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-------~dg~I~iwd~~~~~~~-~~----- 535 (567)
.+ +|.+||+.+... .+++.++..+...+..+.|+|++++|+++. .+++|.+||+.+++.. ..
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~ 470 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 470 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence 45 999999987322 588999999988888899999999999987 2679999999988765 32
Q ss_pred ----ccccCCeeEEEEecCCCEEEEEE-----CCCcEEEcC
Q 008393 536 ----TAHEGLIAALAVSTETGYVASAS-----HDKFVKLWK 567 (567)
Q Consensus 536 ----~~h~~~V~~l~~spdg~~l~s~s-----~Dg~I~iWd 567 (567)
..+...+..++|+|+|++|+++. .|+.|.|||
T Consensus 471 ~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 471 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred hcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 35677899999999999988763 379999997
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.5e-26 Score=240.97 Aligned_cols=261 Identities=12% Similarity=0.153 Sum_probs=218.2
Q ss_pred CCCCccceeccCCccceeee--eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 262 RDAGGRGMDVSQGFSFKEAN--SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~--~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
.+..+++|+..++....... .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP 221 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET
T ss_pred CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC
Confidence 45678999988774332221 5678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe-------CCCcEEEEECCCCeeeEEE
Q 008393 340 SMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-------GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 340 ~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-------~dg~I~iwd~~~~~~~~~~ 411 (567)
++++|++++ .|+.|++||+.+ +..+..+.. ...+.+++|+|+++.+++++. .|+.|++||+.+++.+..+
T Consensus 222 ~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 222 IRDLVYCSNWISEDISVIDRKT-KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp TTTEEEEEETTTTEEEEEETTT-TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCcEEEEECCC-CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 999886554 799999999987 666666654 456999999999887764443 5889999999999887766
Q ss_pred --eCCeeEEEEecCCCEEEEE-ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--------------
Q 008393 412 --KGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-------------- 474 (567)
Q Consensus 412 --~~~~~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-------------- 474 (567)
......++|+|++..++++ +.++.|.+||+.+++.+..+. +...+.+++|+|+|++|++++.
T Consensus 300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 4567789999999877655 669999999999998888776 6778999999999998888876
Q ss_pred -C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCC
Q 008393 475 -D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSE 529 (567)
Q Consensus 475 -d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~ 529 (567)
| .|++||+.++ +.+..+.. ...+..++|+|++++|++++. ++.|++|++..
T Consensus 379 ~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 3 8999999876 55666655 557899999999999998885 99999999864
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=246.69 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=179.9
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC---------CCee
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---------NGSC 407 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~---------~~~~ 407 (567)
+.+++.+|++|+.||.|++||+.+ +..+..+. ...|.++.|+|. +++++.|+.|++|+.. +++.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 445778999999999999999997 55555554 466778888887 6699999999999665 5565
Q ss_pred eEEEe----CCeeEEEEec--CCCEEEEEECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 008393 408 TRVFK----GGTAQMRFQP--HLGRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRV 479 (567)
Q Consensus 408 ~~~~~----~~~~~~~~~~--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~i 479 (567)
+..+. ..+.+++|+| ++..+++++.|+.|++||+++++.+..+.. |...|.+++|+|+|.+|++|+.| .|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 66666 6689999999 999999999999999999999988776644 55689999999999999999999 9999
Q ss_pred EeCCCCCCCceE-EEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec---cccCCee--EEEEecCC
Q 008393 480 WTVGSGSEGECV-HELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIA--ALAVSTET 551 (567)
Q Consensus 480 wd~~~~~~~~~i-~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~---~h~~~V~--~l~~spdg 551 (567)
||++++. .+ ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++.. .+. .|...+. +++|+|++
T Consensus 197 wd~~~~~---~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 197 YNLSSPD---QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp EESSCTT---SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred EECCCCC---CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence 9998873 33 55666 899999999999999999999 559999999988654 222 2444454 69999999
Q ss_pred CEEEEEEC-CCcEEEcC
Q 008393 552 GYVASASH-DKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~-Dg~I~iWd 567 (567)
++|++++. |+.|+||+
T Consensus 273 ~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYK 289 (343)
T ss_dssp SEEEEEETTTTEEEEEE
T ss_pred CEEEEecCCCCcEEEEE
Confidence 99999998 99999994
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.2e-26 Score=241.99 Aligned_cols=232 Identities=20% Similarity=0.352 Sum_probs=195.8
Q ss_pred CCCCCccceeccCC-------ccceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCee-------eeee
Q 008393 261 PRDAGGRGMDVSQG-------FSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKS-------KTNL 325 (567)
Q Consensus 261 ~~d~~~~~~~~~~~-------~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~-------~~~l 325 (567)
..++.+++|++.+. .....+..+.+|...|++++|+|++. +|++|+.||.|++|++.++.. ...+
T Consensus 148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE
T ss_pred CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee
Confidence 34567888888762 22567788899999999999999998 999999999999999987322 4567
Q ss_pred cccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 326 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 326 ~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
..|...|.+++|+| ++.+|++++.||.|++||+++.. ..+..+..|...|.+++|+|++..++++|+.||.|++||+
T Consensus 228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 78999999999999 67799999999999999999742 5667788999999999999999888889999999999999
Q ss_pred CCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC-EEEEEeCC-eEEEE
Q 008393 403 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVW 480 (567)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iw 480 (567)
++... .+..+..|...|.+++|+|++. +|++++.| .|+||
T Consensus 308 ~~~~~--------------------------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 308 RNLKL--------------------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp TCTTS--------------------------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred CCCCC--------------------------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 86321 1225556889999999999985 78899988 99999
Q ss_pred eCCCCCC-----------CceEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCC
Q 008393 481 TVGSGSE-----------GECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 481 d~~~~~~-----------~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~ 530 (567)
|+..... ...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9986322 367778888999999999999999 8899999999999998754
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.1e-26 Score=239.04 Aligned_cols=280 Identities=13% Similarity=0.115 Sum_probs=224.9
Q ss_pred CCCccceec--cCCccceeeeeeccCCCCeEEEEEcC--------------CCCeEEEEeCC------CcEEEEeCCCCe
Q 008393 263 DAGGRGMDV--SQGFSFKEANSVRASTSKVICCHFSS--------------DGKLLATGGHD------KKAVLWHTDTLK 320 (567)
Q Consensus 263 d~~~~~~~~--~~~~~~~~~~~l~~h~~~V~~l~~s~--------------dg~~lasg~~d------g~I~vwd~~~~~ 320 (567)
+..+++||+ .++... ....+.+|...+.++++++ .+..++.++.+ +.|++||++ +.
T Consensus 92 ~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~ 169 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGTVL-AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GY 169 (415)
T ss_dssp EEEEEEEECSSSTTCEE-EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SC
T ss_pred EEEEEEEeCCCCCCCEE-eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CC
Confidence 346899999 777421 2256889998888888775 25566666554 799999997 45
Q ss_pred eeeeecccCccEEEEEECCCCCeEEEEeCCC---cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc-
Q 008393 321 SKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE- 396 (567)
Q Consensus 321 ~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~- 396 (567)
....+..|...|.+++|+|+|++|++++.++ .|++||+.+ +.. ..+..|...+.+++|+|+|+.++++++.|+.
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 5677888999999999999999999999885 999999997 443 4566788899999999999988878877665
Q ss_pred -EEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEE
Q 008393 397 -IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 397 -I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 470 (567)
|++||+.+++...... .....+.|+|++..+++++.+ + .|++||+.+++.. .+..+...+.+++|+|+|++|+
T Consensus 248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEE
T ss_pred eEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEE
Confidence 9999999887643322 346789999999999988864 4 7888899988643 4555777899999999999998
Q ss_pred EEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCcEEEeccccCCee
Q 008393 471 SVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIA 543 (567)
Q Consensus 471 s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~ 543 (567)
+++. + .|++||+.++. . ..+..+. .+.+++|+|+|++|++++.++ .|++||+.++....+..|.+.|.
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 401 (415)
T ss_dssp EEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred EEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence 8875 3 79999998763 2 3344443 789999999999999998877 89999999888889999999999
Q ss_pred EEEEecCCC
Q 008393 544 ALAVSTETG 552 (567)
Q Consensus 544 ~l~~spdg~ 552 (567)
+++|+|...
T Consensus 402 ~~~~~~~~~ 410 (415)
T 2hqs_A 402 FPAWSPYLH 410 (415)
T ss_dssp EEEECCCCC
T ss_pred CCccccccc
Confidence 999999754
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=266.35 Aligned_cols=210 Identities=18% Similarity=0.302 Sum_probs=180.6
Q ss_pred eeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCC--CCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg 351 (567)
..+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.+++ .+..+.+|...|++++|+|+ +.+|++|+.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 466788899999999999998 9999999999999999999887 77888899999999999999 99999999999
Q ss_pred cEEEEEcCCCC-ceeEEeccCCCcEEEEEEcCC------------CCeEEEEEeCCCcEEEEECCCC----eeeEEEe--
Q 008393 352 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNG----SCTRVFK-- 412 (567)
Q Consensus 352 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~------------~~~li~s~~~dg~I~iwd~~~~----~~~~~~~-- 412 (567)
.|++||+.+.. .....+.+|...|.+++|+|. +..++++|+.||.|++||++++ .....+.
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 99999998742 344567789999999999994 2345669999999999999887 3444444
Q ss_pred -CCeeEEEEecC---CCEEEEEECCCeEEEEECCCCe-----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 413 -GGTAQMRFQPH---LGRYLAAAAENVVSILDAETQA-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 413 -~~~~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~-----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..+.+++|+|+ +..+++++.|+.|++||++++. .......|...|++++|+|+|.+|++++.| .|++|++
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 45789999999 8889999999999999998864 333345588899999999999999999999 9999999
Q ss_pred CCCCC
Q 008393 483 GSGSE 487 (567)
Q Consensus 483 ~~~~~ 487 (567)
..+..
T Consensus 284 ~~~~~ 288 (753)
T 3jro_A 284 NLEGK 288 (753)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 86543
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6.3e-26 Score=222.59 Aligned_cols=219 Identities=11% Similarity=0.107 Sum_probs=168.6
Q ss_pred eeeeeccCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe--CCCc
Q 008393 279 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s--~dg~ 352 (567)
++.--.-|...|.+++|+|| +.++++++.+ +.+|++. +++++.+++ .|+.
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~ 158 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQ 158 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCE
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCc
Confidence 44444556789999999999 9999998844 7778653 333444433 4778
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcC---CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC------eeEEEEecC
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------TAQMRFQPH 423 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~------~~~~~~~~~ 423 (567)
|++|++...+..+..+.+|...+..++|++ ++ .+|++++.|++|+|||++++++++.+.++ +..++|+|+
T Consensus 159 V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 159 VEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred EEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 888888655667777788999999999988 44 46779999999999999999999999753 346689998
Q ss_pred CCEEE------------EEECCCeEEEEECCCCeEEEEe-----cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 424 LGRYL------------AAAAENVVSILDAETQACRLSL-----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 424 ~~~l~------------~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
+..++ +++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.| +|+|||+.++
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC
Confidence 87663 4566899999999999887765 3676666555554 8899999999 9999999887
Q ss_pred CCCceEEEeecCCCceE-EEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 486 SEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
+++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 316 ---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 ---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 78889988877655 5899999999999999999999995
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.8e-26 Score=236.30 Aligned_cols=272 Identities=14% Similarity=0.155 Sum_probs=216.0
Q ss_pred CCCeEEEEEcCCCC-eEEEEe----CCC----cEEEEeC--CCCeee--eeecccCccEEEEEECC--------------
Q 008393 287 TSKVICCHFSSDGK-LLATGG----HDK----KAVLWHT--DTLKSK--TNLEEHSSLITDVRFSP-------------- 339 (567)
Q Consensus 287 ~~~V~~l~~s~dg~-~lasg~----~dg----~I~vwd~--~~~~~~--~~l~~h~~~V~~i~fsp-------------- 339 (567)
...|...+|.+.|. ++++|+ .+| .|+|||+ .+++.+ ..+.+|...+..+++.+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677788888775 565776 467 8999999 898877 45888888888777764
Q ss_pred CCCeEEEEeCC------CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC---cEEEEECCCCeeeEE
Q 008393 340 SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRV 410 (567)
Q Consensus 340 ~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg---~I~iwd~~~~~~~~~ 410 (567)
.+..|+.++.+ +.|++||++. .....+.+|...|.+++|+|+|+.++ +++.++ .|++||+.++++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEe
Confidence 25566666554 7999999974 34577778999999999999998666 555554 999999999887654
Q ss_pred E--eCCeeEEEEecCCCEEEEEE-CCC--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEe
Q 008393 411 F--KGGTAQMRFQPHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWT 481 (567)
Q Consensus 411 ~--~~~~~~~~~~~~~~~l~~~~-~dg--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd 481 (567)
. ...+..++|+|++..+++.+ .++ .|++||+.+++. ..+..|...+.+++|+|||++|++++.+ .|++||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 3 34568899999999888544 444 599999999876 4677788899999999999999888753 588889
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
+.++. ...+..+...+..++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++
T Consensus 298 ~~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 298 INGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp TTSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEE
T ss_pred CCCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEE
Confidence 87653 23444566788899999999999988875 58999999999887777665 899999999999999988
Q ss_pred CCC---cEEEcC
Q 008393 559 HDK---FVKLWK 567 (567)
Q Consensus 559 ~Dg---~I~iWd 567 (567)
.|+ .|++||
T Consensus 373 ~~~~~~~l~~~d 384 (415)
T 2hqs_A 373 SQGMGSVLNLVS 384 (415)
T ss_dssp EETTEEEEEEEE
T ss_pred cCCCccEEEEEE
Confidence 876 688875
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.9e-26 Score=237.72 Aligned_cols=223 Identities=15% Similarity=0.146 Sum_probs=171.9
Q ss_pred CCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcC--------CCCeEEEEeCCCcEEEEeCCCCeeeeeecccC
Q 008393 260 DPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSS--------DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~--------dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~ 329 (567)
...|..+|+|+...+.. ...+..+.+|++.|.+++|+| |+++||+|+.|++|+|||+.++..+..+..|.
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~ 186 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS 186 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC
Confidence 45678899999987743 234567899999999999998 89999999999999999999998888888999
Q ss_pred ccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCcee------------------------EEeccCCCcEEEEEEc-CC
Q 008393 330 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL------------------------RTFMGHSASVMSLDFH-PN 383 (567)
Q Consensus 330 ~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~------------------------~~~~~h~~~V~~l~~~-p~ 383 (567)
..|.+++|+|++. +|++++.|++|++||+.+..... ....+|...|.++.|. ++
T Consensus 187 ~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 187 SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 9999999999875 89999999999999998643211 1124678889999997 56
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---------------------eeEEEEec-CCCEEEE-EECCCeEEEEE
Q 008393 384 KDDLICSCDGDGEIRYWSINNGSCTRVFKGG---------------------TAQMRFQP-HLGRYLA-AAAENVVSILD 440 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---------------------~~~~~~~~-~~~~l~~-~~~dg~I~i~d 440 (567)
+. .+++++.|+.+++||+..+.....+..+ .....+.+ .++.+++ ++.|+.|++||
T Consensus 267 g~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 267 GS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp TC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred CC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence 55 5569999999999999887655443221 11123333 3444444 55699999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
+.+++....+..|..+|.+++|+|||++||+++++.+.+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 9999888888889999999999999999999999988888764
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.4e-24 Score=232.55 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=213.5
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc--CCCCceeEEeccC
Q 008393 294 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA--DNPGYSLRTFMGH 371 (567)
Q Consensus 294 ~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~~~h 371 (567)
+|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|++||+ .+ ...+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-c
Confidence 4889999999999999999999999999999984433 899999999999999999999999999 65 66667766 4
Q ss_pred CCcEEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------------CeeEEEEecCCCEEEEEEC-
Q 008393 372 SASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA- 432 (567)
Q Consensus 372 ~~~V~~l~~~p----~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~- 432 (567)
...+..++|+| +|+.+++++..++.|.+||..+++++..+.. .+..+.+++++..+++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56789999999 9988776666799999999999999888754 3457889998887766654
Q ss_pred CCeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEEeec----CCCceEEE
Q 008393 433 ENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC----NGNKFHSC 504 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~~~~----~~~~i~~~ 504 (567)
++.|.+||..+.+.+. .+. +...+..++|+|+|++|++++. + +|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7899999998764332 333 5667889999999998776664 4 9999999877 56666654 33333332
Q ss_pred EEeCCCCeEEEEE--cCCeEEEEECCC-------CcEE-EeccccCCeeEEEEecCCCEEEEEE-------CCCcEEEcC
Q 008393 505 VFHPTYPSLLVIG--CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASAS-------HDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spdg~~l~s~s-------~Dg~I~iWd 567 (567)
++|++..+++.+ .+++|.+||+.+ .+.+ ++..|.+.+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578754455444 578999999988 6666 7778888899999999999999987 277999996
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1e-23 Score=212.77 Aligned_cols=267 Identities=10% Similarity=0.035 Sum_probs=214.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeC-------CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEc
Q 008393 287 TSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDA 358 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~-------dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~ 358 (567)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++|++++++++++ ..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456789999999999888774 568999999999988888753 347889999999966555 55799999999
Q ss_pred CCCCceeEEeccCCC---------cEEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEe-C--CeeEEEEecCCC
Q 008393 359 DNPGYSLRTFMGHSA---------SVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFK-G--GTAQMRFQPHLG 425 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~---------~V~~l~~~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~-~--~~~~~~~~~~~~ 425 (567)
.+ +..+..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. . ....+.|+|++.
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 KT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 87 555565554432 278999999998877666 458899999999999988876 2 367889999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecC----CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCC
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
.++++..++.|.+||..+++.+..+.. +...+..++|+|+|++|++++.+ .|.+||+.++ +.+..+....
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC-
Confidence 999999999999999999998877764 45568889999999987777654 8999999876 4455554433
Q ss_pred ceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 500 KFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
...++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|+|++|+++..+
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999887777 5789999999999887554455678999999999977766654
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.1e-24 Score=243.17 Aligned_cols=273 Identities=12% Similarity=0.103 Sum_probs=212.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeC-CC-----cEEEEeCCCCeeeeeecccCc------------------------cEEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLEEHSS------------------------LITDVR 336 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~-dg-----~I~vwd~~~~~~~~~l~~h~~------------------------~V~~i~ 336 (567)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557899999999999999998 88 899999999988777765543 388999
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCC-ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG- 414 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~- 414 (567)
|+|||++|++++. +.|++||+.+.. ..+..+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999987 899999998731 034556778889999999999987664 44 569999999998876554332
Q ss_pred ------------------eeEEEEecCCCEEEEEECCC---------------------------------eEEEEECCC
Q 008393 415 ------------------TAQMRFQPHLGRYLAAAAEN---------------------------------VVSILDAET 443 (567)
Q Consensus 415 ------------------~~~~~~~~~~~~l~~~~~dg---------------------------------~I~i~d~~~ 443 (567)
...+.|+|++..|++++.++ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 36689999999999987765 889999998
Q ss_pred -CeEEEEec--CCCCCeeEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCCCCceEEEeecCCC----ceEEEEEeCCC
Q 008393 444 -QACRLSLQ--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVHELSCNGN----KFHSCVFHPTY 510 (567)
Q Consensus 444 -~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~-----d-~I~iwd~~~~~~~~~i~~~~~~~~----~i~~~~~sp~~ 510 (567)
++...... .|...+..++| |||++|++++. + .|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 87655443 36778999999 99999987763 4 79999998773 3333333332 34578999999
Q ss_pred CeEEEEEcCCeEEEEEC--CCCcEEEeccccCCeeEE-EEecCCCEEEEE-ECCC--cEEEcC
Q 008393 511 PSLLVIGCYQSLELWNM--SENKTMTLTAHEGLIAAL-AVSTETGYVASA-SHDK--FVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~--~~~~~~~~~~h~~~V~~l-~~spdg~~l~s~-s~Dg--~I~iWd 567 (567)
+++++++.++.+.||.+ ..+ ...+..|...|..+ .|+|+++.|+.. +.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 98888888886666654 444 55777888888887 599999977654 4455 888884
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.5e-23 Score=210.03 Aligned_cols=272 Identities=9% Similarity=0.114 Sum_probs=201.4
Q ss_pred EEEcCCCCe-EEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEecc
Q 008393 293 CHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 293 l~~s~dg~~-lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~ 370 (567)
..|..++++ +++++.++.|.+||..+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.+.......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6777889999999999999988888777777 9999999997777665 889999999884332666666
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CCe-EEEEECCC
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENV-VSILDAET 443 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~d-g--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~-I~i~d~~~ 443 (567)
+...+.+++|+|+++.++ ++..+ + .|.+||+.+++.+..+.. ....++|+|++..++++.. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999998777 54444 3 899999999998887764 4578999999987766654 577 99999875
Q ss_pred CeEE----EEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 444 QACR----LSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 444 ~~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
...+ .........+..++|+|+|++|+.++ .+ .|++||+.++.....+..+.. ...+..++|+|++++|+++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 4222 12223445688999999999776665 45 899999987754233555554 45677899999999887776
Q ss_pred c-CCeEEEEECCCCcEE---Eecc----ccC---CeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 518 C-YQSLELWNMSENKTM---TLTA----HEG---LIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 518 ~-dg~I~iwd~~~~~~~---~~~~----h~~---~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
. ++.|.+||+.+++.. .+.. +.. .+..++|+|++++|++++. ++.|++||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 678999999998772 1111 122 2356899999998876665 56999996
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=3.1e-24 Score=239.46 Aligned_cols=264 Identities=9% Similarity=0.058 Sum_probs=200.7
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+ +...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~-g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS-GRQM 185 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT-TEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC-CCEE
Confidence 45778999999999999986 999999999873 45567778889999999999999999885 5899999987 4444
Q ss_pred EEeccCCCc----------------EEEEEEcCCCCeEEEEEeCCC---------------------------------c
Q 008393 366 RTFMGHSAS----------------VMSLDFHPNKDDLICSCDGDG---------------------------------E 396 (567)
Q Consensus 366 ~~~~~h~~~----------------V~~l~~~p~~~~li~s~~~dg---------------------------------~ 396 (567)
.....+... +.+++|+|||+.++++. .|+ .
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 433333332 47799999998777544 343 7
Q ss_pred EEEEECCC-CeeeEEEe-----CCeeEEEEecCCCEEEEEEC-----CCeEEEEECCCCeEEEEecCCCC----CeeEEE
Q 008393 397 IRYWSINN-GSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRLSLQGHTK----PIDSVC 461 (567)
Q Consensus 397 I~iwd~~~-~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~----~V~~l~ 461 (567)
|++||+.+ ++...... ..+..++| |++..+++++. +..|++||+.+++....+..+.. .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999998 87655432 23567899 99999988765 46899999999988777665543 456899
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE-EEeCCCCeEEEEEcCC---eEEEEECCC-Cc-EEE
Q 008393 462 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQ---SLELWNMSE-NK-TMT 534 (567)
Q Consensus 462 ~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~-~~sp~~~~l~~~~~dg---~I~iwd~~~-~~-~~~ 534 (567)
|+|||+++++++.+ .++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 99999988888887 77777765321 3 56666777778777 5999999887666543 788998753 33 334
Q ss_pred eccccCCeeEEEEecCCCEEEEEECC
Q 008393 535 LTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 535 ~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+.. ...+.+++|+|||++|+....+
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred ccc-CCCceEEEECCCCCEEEEEecC
Confidence 444 6678899999999988766543
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=3.8e-24 Score=209.51 Aligned_cols=256 Identities=12% Similarity=0.077 Sum_probs=196.1
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-Ceeeeeeccc-CccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h-~~~V~~i~f 337 (567)
...+..+++|+...+ ....+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..+ ...|.+++|
T Consensus 18 ~~~~~~i~~~d~~~~----~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTR----KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTT----EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCC----ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 445667888988776 3445667899999999999999999987 88999999999 8877777666 477899999
Q ss_pred CCCCCeEEEEe--CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe
Q 008393 338 SPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415 (567)
Q Consensus 338 sp~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~ 415 (567)
+|++++|++++ .++.+.||.++........+..+. .+..++|+|++..+++++..++.+++|++...
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~---------- 161 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID---------- 161 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETT----------
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECC----------
Confidence 99999999999 445566665543233345554443 48999999999988878888888888875321
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEE
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~ 493 (567)
+++ ...+..+...+.+++|+|+|++|++++. + .++||++.... ..+..
T Consensus 162 ---------------------------~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~ 211 (297)
T 2ojh_A 162 ---------------------------SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVER 211 (297)
T ss_dssp ---------------------------TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEE
T ss_pred ---------------------------CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEE
Confidence 111 1133446678899999999998887764 5 88888876221 34556
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcC-----------CeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEEC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+..+...+..++|+|++++|++++.+ +.|++||+.+++.. .+..|...+.+++|+|++++|++++.
T Consensus 212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 66677788999999999999988876 56999999988654 34478889999999999999988876
Q ss_pred CC
Q 008393 560 DK 561 (567)
Q Consensus 560 Dg 561 (567)
|.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=3.4e-23 Score=207.80 Aligned_cols=264 Identities=11% Similarity=0.146 Sum_probs=192.1
Q ss_pred eEEEEeCCCcEEEEeCC-CC--eeeeeecccCccEEEEEECCCCCeEEEEeCC-CcEEEEEcC--CCCc-eeEEeccCCC
Q 008393 301 LLATGGHDKKAVLWHTD-TL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVWDAD--NPGY-SLRTFMGHSA 373 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~-~~--~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-g~I~iwd~~--~~~~-~~~~~~~h~~ 373 (567)
++++++.|+.|++|+++ ++ +.+.. ..+...+.+++|+|++++|++++.+ +.|++|+++ +... .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444789999999995 33 23333 3467789999999999999998886 999999998 3222 233444333
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCeeeEEEeC--CeeEEEEecCCCEEEEEE-CCCeEEEEECCC-CeE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFKG--GTAQMRFQPHLGRYLAAA-AENVVSILDAET-QAC 446 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~---~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~-~~~ 446 (567)
.+..++|+|+++.+++++..++.|.+||+. ..+.+..+.. ....++|+|++..+++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 788999999998888777779999999994 3344444433 467789999999888888 789999999987 654
Q ss_pred EE----EecC-CCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCC-CCCceEEEeec---C---CCceEEEEEeCCCCe
Q 008393 447 RL----SLQG-HTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSG-SEGECVHELSC---N---GNKFHSCVFHPTYPS 512 (567)
Q Consensus 447 ~~----~~~~-h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~-~~~~~i~~~~~---~---~~~i~~~~~sp~~~~ 512 (567)
.. .+.. ....+.+++|+|++++|++++ .+ .|.+|++... .....+..+.. . ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776665 55 8999999642 11222333221 1 235668999999998
Q ss_pred EEEEE-cCCeEEEEECC--CCc--EE-EeccccCCeeEEEEecCCCEEEEEE-CCCcEEEcC
Q 008393 513 LLVIG-CYQSLELWNMS--ENK--TM-TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 567 (567)
Q Consensus 513 l~~~~-~dg~I~iwd~~--~~~--~~-~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iWd 567 (567)
|+++. .++.|++||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.+|+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 68899999998 332 22 233333 489999999999888888 589999993
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=7.2e-24 Score=245.31 Aligned_cols=289 Identities=10% Similarity=0.039 Sum_probs=229.3
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CeeeeeecccCccEEEEEECCCCC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
...++|....+ .....+.+|...+.++.|+++ .++++++.|+.+.||.++. +.....+..|. .+..++|+|+|+
T Consensus 183 ~~~~lw~~~~~---~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 183 TRGKIWIEVNS---GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TCCEEEEEEET---TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CcCCEEEECCC---CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 34566754443 244556899999999999998 6777888889999998653 44555666665 366779999999
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEecc-----------CCCcEEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~l~~~-p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
+|+++. ++.|++||+.. . .+..+.+ |...+.+++|+ |+|..+++.+ ++.|++|++..+.....
T Consensus 258 ~la~~~-~~~i~~~d~~~-~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 258 RILFSK-GGSIYIFNPDT-E-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp CEEEEE-TTEEEEECTTT-C-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred EEEEEe-CCEEEEecCCc-e-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence 998885 88999999943 3 3334444 34478999999 9988777444 88999999988775542
Q ss_pred Ee--C-CeeEEEEecCCCEEEEEECCCeEE-EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 411 FK--G-GTAQMRFQPHLGRYLAAAAENVVS-ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 411 ~~--~-~~~~~~~~~~~~~l~~~~~dg~I~-i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
.. . .+..+.|+ ++..+++++.++.+. +||+.+++... +.+|...+..++|+|||++|++++.+ .|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 21 2 35567899 888898888888899 99998887654 44788899999999999999999999 9999999876
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC----------eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
+....+..+...+..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|+
T Consensus 411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence 44555557788889999999999999887654 89999999998778888988999999999999999
Q ss_pred EEECCCcEEEcC
Q 008393 556 SASHDKFVKLWK 567 (567)
Q Consensus 556 s~s~Dg~I~iWd 567 (567)
+++.++..++|+
T Consensus 488 ~~s~~~~~~~~~ 499 (1045)
T 1k32_A 488 YLSYRSLDPSPD 499 (1045)
T ss_dssp EEESCCCCCEEC
T ss_pred EEecccCCcCcc
Confidence 999887777664
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2e-23 Score=241.66 Aligned_cols=288 Identities=11% Similarity=0.093 Sum_probs=227.6
Q ss_pred CCccceeccCCccceeeeeeccCCCCe-------EEEEEcCCCCeEEEEeCC------CcEEEEeCCCCeee--------
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKV-------ICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSK-------- 322 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V-------~~l~~s~dg~~lasg~~d------g~I~vwd~~~~~~~-------- 322 (567)
..+.+|+...+ +...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 80 ~~i~~~d~~~g----~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~ 155 (1045)
T 1k32_A 80 ADLYFYNGENG----EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT 155 (1045)
T ss_dssp EEEEEEETTTT----EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS
T ss_pred CeEEEEECCCC----CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc
Confidence 35678887765 467788899888 999999999977777644 35888887655432
Q ss_pred -----------------------------------------eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 323 -----------------------------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 323 -----------------------------------------~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..+.+|...+.++.|+++ .++++++.|+.+.||.++..
T Consensus 156 ~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 156 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 123456778888999988 66777888899999987654
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------------CeeEEEEe-cCCCE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQ-PHLGR 426 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~~~~~-~~~~~ 426 (567)
+.....+..|. .+..++|+|+|..+++. .++.|++||+...... .+.. .+..+.|+ |++..
T Consensus 235 g~~~~~l~~~~-~~~~~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~ 310 (1045)
T 1k32_A 235 GKDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL 310 (1045)
T ss_dssp SCSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC
T ss_pred CCcceEecCCC-CcceeeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCE
Confidence 44556666665 46677999999877644 4899999999544433 4443 47889999 99988
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC-eEE-EEeCCCCCCCceEEEeecCCCceEE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVR-VWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d-~I~-iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
+++++ ++.|.+|++.+++.. .+..|.. .+..++|+ ||+.|++++.+ .|. +||+.++. ...+..+...+..
T Consensus 311 la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----~~~l~~~~~~~~~ 383 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFA 383 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEE
T ss_pred EEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----ceEecCCccceee
Confidence 88877 889999999988755 4666777 89999999 99999999988 888 99987652 2334466788999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-cccCCeeEEEEecCCCEEEEEECCC----------cEEEcC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDK----------FVKLWK 567 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg----------~I~iWd 567 (567)
++|+|+|++|++++.++.|++||+.+++...+. .|.+.+.+++|+|||++|++++.++ .|++||
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 999999999999999999999999999887554 8999999999999999999887654 899996
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.6e-22 Score=202.57 Aligned_cols=280 Identities=13% Similarity=0.100 Sum_probs=204.9
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCee-eeeecccCccEEEEEECCCC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~-~~~l~~h~~~V~~i~fsp~~ 341 (567)
..+++||..++ +....+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+...+.+++|+|++
T Consensus 20 ~~v~~~d~~~~---~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 20 RRISFFSTDTL---EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp TEEEEEETTTC---CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS
T ss_pred CeEEEEeCccc---ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC
Confidence 45677887766 3344455566667 9999999997776665 89999999999988 77777777766669999999
Q ss_pred CeEEEEeCCC---cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc-EEEEECCCCeeeE-----EEe
Q 008393 342 PRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTR-----VFK 412 (567)
Q Consensus 342 ~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~-I~iwd~~~~~~~~-----~~~ 412 (567)
++|+++..++ .|.+||+.+ +..+..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+. .+.
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred CEEEEecCCCCcccEEEEECCC-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 9999555553 899999987 566666553 4557999999999888878787788 9999998644331 122
Q ss_pred --CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeE---EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCC
Q 008393 413 --GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS 484 (567)
Q Consensus 413 --~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~ 484 (567)
.....++|+|++..++++.. ++.|.+||+.+++. +..+..+ ..+..++|+|+|++|+++..+ .|.+||+.+
T Consensus 174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 34678899999997777664 78999999998877 7677643 667889999999988777654 899999987
Q ss_pred CCCCceEEEeecC----CCc---eEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCC
Q 008393 485 GSEGECVHELSCN----GNK---FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTET 551 (567)
Q Consensus 485 ~~~~~~i~~~~~~----~~~---i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg 551 (567)
++. ..+..+... ... ...++|+|++++|++++.+ +.|.+||+.+.....+......-....++|++
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 253 GTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp TEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred Cce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 632 123333322 111 2457999999999877765 59999999887665555444333333444543
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.2e-22 Score=203.82 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=201.7
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC-CcEEEEeCC--CCe--eeeeecccCccEEEEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTD--TLK--SKTNLEEHSSLITDVRF 337 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d-g~I~vwd~~--~~~--~~~~l~~h~~~V~~i~f 337 (567)
+..+++|+......++.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|+++ +++ .+..+..+. .+.+++|
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST 91 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE
T ss_pred CCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE
Confidence 456778887543333344333 477789999999999999988876 999999997 544 344555444 7899999
Q ss_pred CCCCCeEEEEeC-CCcEEEEEcCCC--CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeE----
Q 008393 338 SPSMPRLATSSF-DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR---- 409 (567)
Q Consensus 338 sp~~~~l~s~s~-dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~---- 409 (567)
+|++++|++++. ++.|.+||+... ...+..+. ....+.+++|+|+++.+++++..++.|++||+.+ ++...
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 999998877765 888999999521 23334444 3346889999999988876665899999999987 65432
Q ss_pred EEe----CCeeEEEEecCCCEEEEEE-CCCeEEEEECCC--CeE--EEEec---CC---CCCeeEEEEcCCCCEEEEEe-
Q 008393 410 VFK----GGTAQMRFQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQ---GH---TKPIDSVCWDPSGELLASVS- 473 (567)
Q Consensus 410 ~~~----~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~---~h---~~~V~~l~~sp~g~~l~s~s- 473 (567)
.+. .....++|+|++..+++++ .++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++.
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 222 1456789999999887776 689999999953 432 22222 11 23567899999999887555
Q ss_pred CC-eEEEEeCCCC-CCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEE--ECCCCcEEEe--ccccCCeeEEE
Q 008393 474 ED-SVRVWTVGSG-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSENKTMTL--TAHEGLIAALA 546 (567)
Q Consensus 474 ~d-~I~iwd~~~~-~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~~~~~~~--~~h~~~V~~l~ 546 (567)
.+ .|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+| |..+++...+ ........+++
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 55 9999999732 22345555555444 88899999999999888 57899999 5456644321 12235577888
Q ss_pred EecCCC
Q 008393 547 VSTETG 552 (567)
Q Consensus 547 ~spdg~ 552 (567)
|.++.+
T Consensus 330 ~~~~~~ 335 (343)
T 1ri6_A 330 VNAHEG 335 (343)
T ss_dssp EEEEC-
T ss_pred EEcccC
Confidence 887654
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=8.3e-23 Score=204.44 Aligned_cols=260 Identities=11% Similarity=0.090 Sum_probs=202.6
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCc--cEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEec-cC----
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFM-GH---- 371 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~--~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~-~h---- 371 (567)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|++++++ ++..++.|.+||+.+ +..+..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccc
Confidence 4789999999999999999999888763332 488999999998765 455678999999987 45554444 22
Q ss_pred CCcEEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEE
Q 008393 372 SASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~-----------~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.. ....+.|+|++..++++ ++.|.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 125678999999887775431 479999999999988877654 45678899999988887 689999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-------------------------eEEEEeCCCCCCCceEEE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------------SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-------------------------~I~iwd~~~~~~~~~i~~ 493 (567)
||+.+++.+..+..+.. ...+.|+|+++.|+..+.+ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999998877765431 1133789999877655533 2689999876432 334
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+...+..++|+|++++|+++ ++.|++||+.+++..........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999999888 6899999999988775444456789999999999999999999999996
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=4.4e-24 Score=237.44 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=204.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc---cEEEEEECCCCCeEEEEeCC---------CcEEEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSFD---------KTVRVW 356 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~---~V~~i~fsp~~~~l~s~s~d---------g~I~iw 356 (567)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4668999999998876 6899999999999998888887765 49999999999999999874 778899
Q ss_pred EcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---e---------------
Q 008393 357 DADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---T--------------- 415 (567)
Q Consensus 357 d~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~--------------- 415 (567)
|+.+.. . ..+. +|...+..++|+|+|+.++++ + ++.|++||+.+++.......+ +
T Consensus 97 d~~~~~-~-~~l~~~~~~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGD-P-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCC-C-EECCCTTCCSCCCSBCCBCSSTTCEEEE-E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCc-e-EeccCCccccccccccEECCCCCEEEEE-E-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 998743 2 3333 444558899999999877744 4 479999999998877665432 1
Q ss_pred ---eEEEEecCCCEEEEEECCC----------------------------------eEEEEECCCCeEEEEecCC-----
Q 008393 416 ---AQMRFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACRLSLQGH----- 453 (567)
Q Consensus 416 ---~~~~~~~~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~~~~~~h----- 453 (567)
..+.|+|++..|++++.++ .|++||+.+++....+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 5799999999999887543 7999999998865566654
Q ss_pred -CCCeeEEEEcCCCCEEEEEeC----C-eEEEEeCCCCCCCceEEEeec-CCCce----EEEEEeCCCCeEEEE--EcCC
Q 008393 454 -TKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGSEGECVHELSC-NGNKF----HSCVFHPTYPSLLVI--GCYQ 520 (567)
Q Consensus 454 -~~~V~~l~~sp~g~~l~s~s~----d-~I~iwd~~~~~~~~~i~~~~~-~~~~i----~~~~~sp~~~~l~~~--~~dg 520 (567)
...+..++|+|||++|++... + .|++||+.++. +...+.. +...+ ..++|+|||+.|+.. ..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 567899999999998877642 3 69999998763 3333322 22222 367999999988764 3455
Q ss_pred ------eEEEEE-CCCCc---EEEeccccCCeeE-EEEecCCCEEEEEECC---CcEEEcC
Q 008393 521 ------SLELWN-MSENK---TMTLTAHEGLIAA-LAVSTETGYVASASHD---KFVKLWK 567 (567)
Q Consensus 521 ------~I~iwd-~~~~~---~~~~~~h~~~V~~-l~~spdg~~l~s~s~D---g~I~iWd 567 (567)
.|++|| ..++. ...+..+...+.. ++|+|||++|+..+.+ +.++||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 578888 45555 4455444444554 6999999999876665 7888884
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=3.6e-23 Score=224.37 Aligned_cols=268 Identities=9% Similarity=0.056 Sum_probs=205.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCC--
Q 008393 287 TSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADN-- 360 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~-- 360 (567)
..+|++++|+|||++||+++. ||++.||++++++.......+...+..++|+|| +++++++. +...+||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 567999999999999999887 999999999776665544444468999999999 77777775 45566665543
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECC----CeE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE----NVV 436 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~I 436 (567)
.+... .+..+. .+...+|+|+++.++++.+.++.+.+||+.+++...........+.|+|++..+++++.+ ..|
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEE
Confidence 33332 333222 344678899988766666666667799999998777766655889999999999988776 789
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCCCceEEEE--------
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCV-------- 505 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~-------- 505 (567)
++||+.+++.. .+..|...+..++|+|||++|+++..+ .|++||+.++ ... .+..+...+..++
T Consensus 178 ~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 178 FTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred EEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhcccccee
Confidence 99999988765 667788889999999999999976655 5999999876 333 5555655565566
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCc---EEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF---VKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iWd 567 (567)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred EcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888899999999999 55443 344678999999 9999998887743 55553
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3e-23 Score=230.75 Aligned_cols=268 Identities=9% Similarity=0.073 Sum_probs=189.5
Q ss_pred CeEEEEEcCCCCeEEEEeCC---------CcEEEEeCCCCeee--eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~d---------g~I~vwd~~~~~~~--~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.|.+++|||||++|++++.+ +.|++||+.+++.. .....|...+..++|+|||++|++++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 48899999999999999764 78889999988762 222345556899999999999999986 7899999
Q ss_pred cCCCCceeEEeccCCCc------------------EEEEEEcCCCCeEEEEEeCC-------------------------
Q 008393 358 ADNPGYSLRTFMGHSAS------------------VMSLDFHPNKDDLICSCDGD------------------------- 394 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~------------------V~~l~~~p~~~~li~s~~~d------------------------- 394 (567)
+.+ +........+... +.+++|+|||+.|+++...+
T Consensus 141 ~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 987 4444444443333 37899999998777554321
Q ss_pred --------CcEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEEC----CCeEEEEECCCCeEEEEecC-
Q 008393 395 --------GEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQG- 452 (567)
Q Consensus 395 --------g~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~- 452 (567)
..|++||+.+++....+.. .+..+.|+|++..+++... +..|++||+.++++...+..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 2799999998886555543 3466899999887766553 25899999999987766543
Q ss_pred CCCCee----EEEEcCCCCEEEEE-e-CC-------eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEc
Q 008393 453 HTKPID----SVCWDPSGELLASV-S-ED-------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGC 518 (567)
Q Consensus 453 h~~~V~----~l~~sp~g~~l~s~-s-~d-------~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~ 518 (567)
+...+. .++|+|||+.|+.. + .+ .|++||+..+....+...+......+.. ++|+|+++.|++.+.
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~ 379 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence 334443 78999999977754 3 22 3777773222220012333333344444 689999999987776
Q ss_pred C---CeEEEEECCCC---cEEEecc---ccCCeeEEEEecCCCEEEEEE
Q 008393 519 Y---QSLELWNMSEN---KTMTLTA---HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 519 d---g~I~iwd~~~~---~~~~~~~---h~~~V~~l~~spdg~~l~s~s 558 (567)
+ +.++||++... +...+.. |...+..++|+|||++|+...
T Consensus 380 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 380 EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 6 68889987643 2223333 677799999999999887654
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2e-22 Score=223.50 Aligned_cols=272 Identities=12% Similarity=0.105 Sum_probs=203.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC-----CC
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----PG 362 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~-----~~ 362 (567)
..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++||+.+ ..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666654 6999999999887654 44466778999999999999985 679999999986 33
Q ss_pred ceeEEeccCCCc--------------EEEEEEcCCCCeEEEEEe--------------------------------CCCc
Q 008393 363 YSLRTFMGHSAS--------------VMSLDFHPNKDDLICSCD--------------------------------GDGE 396 (567)
Q Consensus 363 ~~~~~~~~h~~~--------------V~~l~~~p~~~~li~s~~--------------------------------~dg~ 396 (567)
. ......+... +.++.|+|||+.++++.. .+..
T Consensus 158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 2 2222223232 488999999987775541 3468
Q ss_pred EEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEEEEECCC-----eEEEEECCCC-eEEEEecC-CCC---CeeEEE
Q 008393 397 IRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN-----VVSILDAETQ-ACRLSLQG-HTK---PIDSVC 461 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~-~~~~~~~~-h~~---~V~~l~ 461 (567)
|++||+.+++...... ..+..+.|+|++..+++++.++ .|++||+.++ ........ +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999988665442 2356899999999999888765 9999999998 44333322 222 346789
Q ss_pred EcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEcCC-----eEEEEECCCCcE
Q 008393 462 WDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQ-----SLELWNMSENKT 532 (567)
Q Consensus 462 ~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~ 532 (567)
|+| ||++|+++..+ .++||++.. ....+..+..+...+.. ++|+|+++.|++++.+. .|+.||+.+++.
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 394 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDT--TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT 394 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEET--TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEEC--CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence 999 99999988888 788888752 12456666666667776 79999999888776653 688888887764
Q ss_pred EEeccccCCeeEEEEecCCCEEEEEECC----CcEEEcC
Q 008393 533 MTLTAHEGLIAALAVSTETGYVASASHD----KFVKLWK 567 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~I~iWd 567 (567)
..+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 395 ~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 395 KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 444 467789999999999988876544 4588885
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.7e-21 Score=194.19 Aligned_cols=257 Identities=10% Similarity=0.093 Sum_probs=180.0
Q ss_pred CCcEEEEeC--CCCeeee-eecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCc-eeEEeccCCCcEEEEEE
Q 008393 308 DKKAVLWHT--DTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY-SLRTFMGHSASVMSLDF 380 (567)
Q Consensus 308 dg~I~vwd~--~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~ 380 (567)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|++|++++... .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777665 4565543 3345567788899999999 655554 68999999975221 33444557778899999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-Ce--eeEEEeC------------CeeEEEEecCCCEEEEEE-CCCeEEEEECC-C
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINN-GS--CTRVFKG------------GTAQMRFQPHLGRYLAAA-AENVVSILDAE-T 443 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~-~~--~~~~~~~------------~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~-~ 443 (567)
+|+++.+++++..++.|.+|++.. +. .+..+.. ....++|+|++. ++++. .++.|.+||+. +
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCC
Confidence 999988876666889999999963 32 2333322 255799999999 55544 47899999998 5
Q ss_pred CeEE--EEecCC-CCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCC-CCCceEEEeecCC------CceEEEEEeCCCC
Q 008393 444 QACR--LSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCNG------NKFHSCVFHPTYP 511 (567)
Q Consensus 444 ~~~~--~~~~~h-~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~-~~~~~i~~~~~~~------~~i~~~~~sp~~~ 511 (567)
++.. ..+..+ ...+..++|+|||++|++++. + .|.+|++... .....+..+.... ..+..++|+|+|+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5433 222322 336788999999997777654 4 8999998742 1222233333322 4588899999999
Q ss_pred eEEEEE-cCCeEEEEECCCC---cEE-EeccccCCeeEEEEecCCCEEEEEECC-CcEEEc
Q 008393 512 SLLVIG-CYQSLELWNMSEN---KTM-TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 566 (567)
Q Consensus 512 ~l~~~~-~dg~I~iwd~~~~---~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW 566 (567)
+|+++. .++.|.+|++... +.+ .+..+...+..++|+|||++|++++.+ +.|.+|
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 886554 5789999999732 222 444566678999999999998888765 889998
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=6.8e-21 Score=192.19 Aligned_cols=268 Identities=13% Similarity=0.156 Sum_probs=189.8
Q ss_pred CCCccceeccCC-ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCe--eeeeecccCccEEEEE
Q 008393 263 DAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK--SKTNLEEHSSLITDVR 336 (567)
Q Consensus 263 d~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~ 336 (567)
+..+.+|.+... ..+..+. ...+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 344555555431 2222322 234556778899999999 555543 6899999998765 4445556778899999
Q ss_pred ECCCCCeEEEEe-CCCcEEEEEcCCCCce--eEEecc---------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-
Q 008393 337 FSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN- 403 (567)
Q Consensus 337 fsp~~~~l~s~s-~dg~I~iwd~~~~~~~--~~~~~~---------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~- 403 (567)
|+|++++|++++ .++.|.+|++...+.. +..+.. +...+.+++|+|+++ ++++...++.|++|++.
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence 999999998888 6799999999743332 222221 123488999999998 78787788999999998
Q ss_pred CCeeeEE--EeC----CeeEEEEecCCCEEEEEE-CCCeEEEEECCC--CeE--EEEecCCC------CCeeEEEEcCCC
Q 008393 404 NGSCTRV--FKG----GTAQMRFQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQGHT------KPIDSVCWDPSG 466 (567)
Q Consensus 404 ~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~~h~------~~V~~l~~sp~g 466 (567)
+++.... +.. ....++|+|++..++++. .++.|.+|++.. ++. +..+.... ..+..++|+|||
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 5543322 221 456789999999777765 478999998874 543 23333322 348889999999
Q ss_pred CEEEEE-eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEE--ECCCCcEE
Q 008393 467 ELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELW--NMSENKTM 533 (567)
Q Consensus 467 ~~l~s~-s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iw--d~~~~~~~ 533 (567)
++|+++ ..+ .|.+|++........+..+..+...+..++|+|++++|++++.+ +.|.+| |..+++..
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 987544 445 99999997433345666666666778899999999999998875 799999 55667655
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=1.2e-21 Score=200.76 Aligned_cols=285 Identities=12% Similarity=0.069 Sum_probs=205.5
Q ss_pred eeeeeccCCCCeEE-----EEEcCCCCeEEEEeC-CC--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 279 EANSVRASTSKVIC-----CHFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 279 ~~~~l~~h~~~V~~-----l~~s~dg~~lasg~~-dg--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
++..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+||++.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 45566677766666 889999999999887 66 48899999999888777777776678899999999999999
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEE--EcCCCCeEEEEE---------------------eCCCcEEEEECCCCee
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLD--FHPNKDDLICSC---------------------DGDGEIRYWSINNGSC 407 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~--~~p~~~~li~s~---------------------~~dg~I~iwd~~~~~~ 407 (567)
+.|++||+.+ +.....+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998 554455555666554444 478887655321 2347899999999876
Q ss_pred eEEEeC--CeeEEEEec-CCCEEEEEECC------CeEEEEECCCCeEEEEecCCC--CCeeEEEEcCCCCEEEEEeC--
Q 008393 408 TRVFKG--GTAQMRFQP-HLGRYLAAAAE------NVVSILDAETQACRLSLQGHT--KPIDSVCWDPSGELLASVSE-- 474 (567)
Q Consensus 408 ~~~~~~--~~~~~~~~~-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~-- 474 (567)
...... ....+.|+| ++..++.+..+ ..|.++|...++.. .+..+. ..+..++|+|||+.|+..+.
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 655443 467889999 88888877763 37888998776544 343343 25778999999997765443
Q ss_pred C----eEEEEeCCCCCCCceEEEeecCCCc---eEEEEEeCCCCeEEEE---------EcCCeEEEEECCCCcEEEeccc
Q 008393 475 D----SVRVWTVGSGSEGECVHELSCNGNK---FHSCVFHPTYPSLLVI---------GCYQSLELWNMSENKTMTLTAH 538 (567)
Q Consensus 475 d----~I~iwd~~~~~~~~~i~~~~~~~~~---i~~~~~sp~~~~l~~~---------~~dg~I~iwd~~~~~~~~~~~h 538 (567)
+ .|++||+.+++. ..+..+...... ...++|+|||+.|++. ..+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 2 299999988743 233333321000 1112799999988865 3456899999999888777766
Q ss_pred cC-----------CeeEEEEecCCCEEEEEE-CCCcEEEc
Q 008393 539 EG-----------LIAALAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 539 ~~-----------~V~~l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
.. .+.+++|+|||++|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688899999999888766 47777776
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.6e-21 Score=195.13 Aligned_cols=258 Identities=10% Similarity=0.066 Sum_probs=196.6
Q ss_pred CCCccceeccCCccceeeeeecc-CCC-CeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeeccc-----CccEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRA-STS-KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEH-----SSLITD 334 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~-h~~-~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h-----~~~V~~ 334 (567)
+..+.+||..++ +.+..+.. +.. .+.+++|+|||++++ ++..++.|.+||+.+++.+..+... ...+.+
T Consensus 10 ~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 10 PDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 456778887765 34444442 222 478999999998765 5556789999999999888776532 235778
Q ss_pred EEECCCCCeEEEEe------------CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 335 VRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 335 i~fsp~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
++|+|++++|++++ .++.|.+||+.+ +..+..+.. ...+.+++|+|+++.++++ ++.|++||+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~ 161 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDP 161 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEEC
Confidence 99999999998886 579999999987 555555543 4567889999999877744 689999999
Q ss_pred CCCeeeEEEeCCe--eEEEEecCCCEEEEEECCC------------------------eEEEEECCCCeEE-EEecCCCC
Q 008393 403 NNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAEN------------------------VVSILDAETQACR-LSLQGHTK 455 (567)
Q Consensus 403 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg------------------------~I~i~d~~~~~~~-~~~~~h~~ 455 (567)
.+++.+..+..+. ..+.|+|++..+++.+..+ .|.+||+.+++.. ..+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9999887776433 4457788877665554322 4789999998764 33445667
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 456 PIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.+.+++|+|+|++|+++ .+.|++||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 242 ~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 78899999999999888 349999999776 45555543 345788999999999999989999999999998876
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.6e-21 Score=216.31 Aligned_cols=241 Identities=12% Similarity=0.152 Sum_probs=179.9
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----CeeeeeecccCcc--------------EEEEEECCCCCe
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSL--------------ITDVRFSPSMPR 343 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-----~~~~~~l~~h~~~--------------V~~i~fsp~~~~ 343 (567)
+..+...+.+++|+|||++||++ .++.|++||+.+ ++.......+... +.++.|+|||++
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~ 194 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC 194 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence 33455667789999999999995 689999999998 7776655544443 489999999999
Q ss_pred EEEEe---------------------------------CCCcEEEEEcCCCCceeEEe--ccCCCcEEEEEEcCCCCeEE
Q 008393 344 LATSS---------------------------------FDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLI 388 (567)
Q Consensus 344 l~s~s---------------------------------~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~li 388 (567)
|++++ .+..|++||+.+ +...... ..|...+.+++|+|+++.++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 99987 446799999987 4433322 25677899999999998776
Q ss_pred EEEeCCC-----cEEEEECCCC-eeeEEEe--CC-----eeEEEEec--CCCEEEEEECCCeEEEEECC-CCeEEEEecC
Q 008393 389 CSCDGDG-----EIRYWSINNG-SCTRVFK--GG-----TAQMRFQP--HLGRYLAAAAENVVSILDAE-TQACRLSLQG 452 (567)
Q Consensus 389 ~s~~~dg-----~I~iwd~~~~-~~~~~~~--~~-----~~~~~~~~--~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~ 452 (567)
++ +.++ .|++||+.++ ....... .. ...+.|+| ++..++++..++.+.+|++. ++..+..+..
T Consensus 274 ~~-~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VA-EVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EE-EECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EE-EeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 44 4454 8999999998 4333332 11 24579999 88877777778888888775 5677778888
Q ss_pred CCCCeeE-EEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC----Ce
Q 008393 453 HTKPIDS-VCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QS 521 (567)
Q Consensus 453 h~~~V~~-l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d----g~ 521 (567)
+...+.. ++|+|+|+.|++++.+ .|..||+.++. ...+. +...+..++|+|++++|++.+.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8888877 7999999988776644 46666666542 22222 45678899999999998887554 46
Q ss_pred EEEEECCCCc
Q 008393 522 LELWNMSENK 531 (567)
Q Consensus 522 I~iwd~~~~~ 531 (567)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999998887
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=4.9e-20 Score=187.02 Aligned_cols=282 Identities=12% Similarity=0.087 Sum_probs=197.8
Q ss_pred CCCCccceeccC-CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC----CcEEEEeCCC--Cee--eeeecccCccE
Q 008393 262 RDAGGRGMDVSQ-GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDT--LKS--KTNLEEHSSLI 332 (567)
Q Consensus 262 ~d~~~~~~~~~~-~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d----g~I~vwd~~~--~~~--~~~l~~h~~~V 332 (567)
.+..+.+|.+.. ...++.+..+ |...+..++|+|||++|++++.+ +.|.+|+++. ++. +..+..+....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 345566665532 2234444444 67778899999999999998875 7999998765 443 33444456677
Q ss_pred EEEEECCCCCeEEEEe-CCCcEEEEEcCCCCcee---E--Eecc--------CCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 333 TDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSL---R--TFMG--------HSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~---~--~~~~--------h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
..+++ ++++|++++ .++.|.+|++...+... . ...+ +...+.+++|+|+++.+++++..++.|+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 88888 788777776 57899999997643321 1 1111 2334688999999998887777789999
Q ss_pred EEECCCCee------e------EE--Ee--CCeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeE--EEEec---CCCCC
Q 008393 399 YWSINNGSC------T------RV--FK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC--RLSLQ---GHTKP 456 (567)
Q Consensus 399 iwd~~~~~~------~------~~--~~--~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~--~~~~~---~h~~~ 456 (567)
+|++..... + .. .. .....++|+|++..++++. .++.|.+||+.+++. +..+. .+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG 260 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence 999875432 1 11 11 2456799999999888888 489999999987754 23332 23455
Q ss_pred eeEEEEcCCCCEEEEEe-C-C-eEEEEeCCC-CCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEE--ECCC
Q 008393 457 IDSVCWDPSGELLASVS-E-D-SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSE 529 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s-~-d-~I~iwd~~~-~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~ 529 (567)
...++|+|||++|+++. . + .|.+|++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+| |..+
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 78999999999886655 4 4 899999962 122334555555 56778899999999999988 56789885 5557
Q ss_pred CcEEEec--cccCCeeEEEEe
Q 008393 530 NKTMTLT--AHEGLIAALAVS 548 (567)
Q Consensus 530 ~~~~~~~--~h~~~V~~l~~s 548 (567)
++...+. .+...+.|+.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7766443 345678898885
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=6.1e-21 Score=191.96 Aligned_cols=268 Identities=8% Similarity=0.030 Sum_probs=191.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEec
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
++++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+ +..+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEE
Confidence 45788889999999999999999999999988887543 2578999999998665 445689999999987 55555544
Q ss_pred cC------CCcEEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCCe---eeEEEe--CCeeEEEEecCCCEE
Q 008393 370 GH------SASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNGS---CTRVFK--GGTAQMRFQPHLGRY 427 (567)
Q Consensus 370 ~h------~~~V~~l~~~p~~~~li~s~~~-----------dg~I~iwd~~~~~---~~~~~~--~~~~~~~~~~~~~~l 427 (567)
.+ ...+..++|+|+++.++++... ++.|.+||+.+++ .+..+. ..+..++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2237789999999877755432 4899999998844 333433 3467788999988 6
Q ss_pred EEEECCCeEEEEECCCCeEEEEecCCCC------------------------CeeEEEEcCCCCEEEEEeCC--eEEEEe
Q 008393 428 LAAAAENVVSILDAETQACRLSLQGHTK------------------------PIDSVCWDPSGELLASVSED--SVRVWT 481 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~------------------------~V~~l~~sp~g~~l~s~s~d--~I~iwd 481 (567)
++++ +.|.+||+.+++.+..+..+.. ....+++++++......... .+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 6643 4499999999988877754320 23446666554322111111 233356
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeC-CCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
..++. ..+..+......+..++|+| ++++++++ ++.|++||+.+++..........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 65442 12223334566788999999 99998888 889999999999877444445568899999999999888889
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=3.6e-20 Score=186.71 Aligned_cols=234 Identities=8% Similarity=0.046 Sum_probs=189.0
Q ss_pred cCccEEEEEECCCCCeEEEEeC-------CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 328 HSSLITDVRFSPSMPRLATSSF-------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
....+..++|+|++++|++++. ++.|.+||..+ +..+..+.. ...+..++|+++++.+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3456889999999999888874 46899999987 555555543 34578899999999888888889999999
Q ss_pred ECCCCeeeEEEeCC------------eeEEEEecCCCEEEEEE--CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 401 SINNGSCTRVFKGG------------TAQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 401 d~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
|+.+++.+..+..+ ...+.|+|+++.++++. .++.|.+||..+++.+..+..+...+.+++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999988877652 46789999999888877 37899999999999998888666678899999999
Q ss_pred CEEEEEeCC-eEEEEeCCCCCCCceEEEeec----CCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccC
Q 008393 467 ELLASVSED-SVRVWTVGSGSEGECVHELSC----NGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEG 540 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~----~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~ 540 (567)
++|++++.+ .|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|++||+.+++.........
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 999999888 9999999876 45555443 45567889999999988888765 899999999988773322222
Q ss_pred CeeEEEEecCCCEEEEEE-CCCcEEEcC
Q 008393 541 LIAALAVSTETGYVASAS-HDKFVKLWK 567 (567)
Q Consensus 541 ~V~~l~~spdg~~l~s~s-~Dg~I~iWd 567 (567)
...++|+|++++|++++ .++.|.+||
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999766655 689999996
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=4.6e-20 Score=187.21 Aligned_cols=263 Identities=12% Similarity=0.114 Sum_probs=186.4
Q ss_pred CeEEEEe----CCCcEEEEeC--CCCeeeeeecccCccEEEEEECCCCCeEEEEeCC----CcEEEEEcCCC-Cc--eeE
Q 008393 300 KLLATGG----HDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNP-GY--SLR 366 (567)
Q Consensus 300 ~~lasg~----~dg~I~vwd~--~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d----g~I~iwd~~~~-~~--~~~ 366 (567)
.++++|+ .++.|.+|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|+++.. +. .+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3555664 3568888866 4555443322277778899999999999999886 79999998763 22 233
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----E--eC-----------CeeEEEEecCCCEEEE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----F--KG-----------GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~--~~-----------~~~~~~~~~~~~~l~~ 429 (567)
....+...+..+++ +++.++++...++.|.+|++.....+.. + .+ +...++|+|++.++++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 33445667788888 7777776766789999999975433211 1 11 2366999999998877
Q ss_pred EEC-CCeEEEEECCCCe-------E------EEEecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEE
Q 008393 430 AAA-ENVVSILDAETQA-------C------RLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 430 ~~~-dg~I~i~d~~~~~-------~------~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~ 493 (567)
+.. ++.|.+|++.... . ......+...+..++|+|+|++|++++. + .|.+|++.++. ...+..
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~~ 250 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-LDEIQT 250 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-EEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-eEEeEE
Confidence 775 7899999877532 1 1222334566789999999998888874 5 99999998542 122333
Q ss_pred ee---cCCCceEEEEEeCCCCeEEEEEcC--CeEEEEECC--CCcEE---EeccccCCeeEEEEecCCCEEEEEE-CCCc
Q 008393 494 LS---CNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKF 562 (567)
Q Consensus 494 ~~---~~~~~i~~~~~sp~~~~l~~~~~d--g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~ 562 (567)
+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+|+|++|++++ .++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence 32 233456799999999999887765 799999986 44432 2233 55788999999999998888 5788
Q ss_pred EEEc
Q 008393 563 VKLW 566 (567)
Q Consensus 563 I~iW 566 (567)
|.+|
T Consensus 330 v~v~ 333 (361)
T 3scy_A 330 IQIF 333 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.7e-20 Score=195.37 Aligned_cols=239 Identities=11% Similarity=0.117 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe----------eeee-----ecccCccEEEEEECCCCCeEE----EE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----------SKTN-----LEEHSSLITDVRFSPSMPRLA----TS 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~----------~~~~-----l~~h~~~V~~i~fsp~~~~l~----s~ 347 (567)
...+.++++++++.+|++++.++ |+||+..... .... ...+...|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44678999999999999999888 8888753110 0110 113566799999999999999 78
Q ss_pred eCCCcEEEEEcCCC-----C--c---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CC
Q 008393 348 SFDKTVRVWDADNP-----G--Y---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG 414 (567)
Q Consensus 348 s~dg~I~iwd~~~~-----~--~---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~ 414 (567)
+.|+.|+|||+.+. . . .+..+.+|...|.+++|+|+...++++++.||.|++||++++..+.... ..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998652 1 1 2456677999999999999866788899999999999999987665543 36
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-------CCeeEEEEcCCCCEEEEEe-CC-------eEEE
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVS-ED-------SVRV 479 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-------~~V~~l~~sp~g~~l~s~s-~d-------~I~i 479 (567)
+.+++|+|++..+++++.|+.|++||.+ ++....+..|. ..|.+++|++++.++++.+ .+ .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 8899999999999999999999999998 55555554432 3789999999988876544 21 3999
Q ss_pred EeCCCCCC--CceEEEee-------cCCCceEEEEEeCCCCeEEEEEcCC-eEEEEEC
Q 008393 480 WTVGSGSE--GECVHELS-------CNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM 527 (567)
Q Consensus 480 wd~~~~~~--~~~i~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~ 527 (567)
|+++.... ...+..+. ....+...+.+-++.+++++++... .|.|+..
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 99986532 12222221 1222333444557778777776543 4555543
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=218.08 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=199.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc---cEEEEEECCCCCeEEEEeC---------CCcEEEEEcC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSF---------DKTVRVWDAD 359 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~---~V~~i~fsp~~~~l~s~s~---------dg~I~iwd~~ 359 (567)
+++|+|||++++++ .|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 78999999666554 699999999999998887776654 4899999999999999876 7899999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---------------------eeEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---------------------TAQM 418 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---------------------~~~~ 418 (567)
+ +..+.. ......+..++|+|||+.++++ . ++.|++||+.+++.......+ ...+
T Consensus 99 ~-g~~~~~-~~l~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 N-GEFVRG-NELPRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp T-TEECCS-SCCCSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred C-Cccccc-eecCcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 7 443100 1123568899999999877754 3 789999999988765433221 1479
Q ss_pred EEecCCCEEEEEECCC----------------------------------eEEEEECCCCeEE---E-----EecCCCCC
Q 008393 419 RFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACR---L-----SLQGHTKP 456 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~---~-----~~~~h~~~ 456 (567)
.|+|++..|++++.+. .|++||+.+++.+ . .+.+|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999887642 7889999988642 1 13457788
Q ss_pred eeEEEEcCCCCEEEEEeCC-----eEEEEe----CCCCCCCceEE-EeecCCCceE-----EEEEeCCCCeEEEE--EcC
Q 008393 457 IDSVCWDPSGELLASVSED-----SVRVWT----VGSGSEGECVH-ELSCNGNKFH-----SCVFHPTYPSLLVI--GCY 519 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d-----~I~iwd----~~~~~~~~~i~-~~~~~~~~i~-----~~~~sp~~~~l~~~--~~d 519 (567)
+.+++|+||++++++.... .|.+|| +.++.....+. ....+...+. .+.|+|||+.|+.. ..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999998877774422 488899 76653322221 0134455554 77999999977653 334
Q ss_pred C--eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC-----CcEEEcC
Q 008393 520 Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-----KFVKLWK 567 (567)
Q Consensus 520 g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iWd 567 (567)
+ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 335 g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 335 GYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 4 7888999888866777777778888888 88887776665 7788873
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=209.37 Aligned_cols=269 Identities=13% Similarity=0.050 Sum_probs=185.2
Q ss_pred CeEEEEEcCCCCeEEEEeC---------CCcEEEEeCCCCeee--eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~---------dg~I~vwd~~~~~~~--~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.|.+++|||||++||+++. ++.|++||+.+++.+ ..+ ...+..++|+|||++|+++. ++.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 4779999999999998876 789999999998873 222 24688999999999999986 77999999
Q ss_pred cCCCCceeEEeccCCCcE-----------------EEEEEcCCCCeEEEEEeCCC-------------------------
Q 008393 358 ADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDG------------------------- 395 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~li~s~~~dg------------------------- 395 (567)
+.++.....+..++...| .+++|+|||+.|++....++
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 987433211223333323 48999999987775443322
Q ss_pred --------cEEEEECCCCeee--EEE---------eCCeeEEEEecCCCEEEEE-ECC----CeEEEEE----CCCCeEE
Q 008393 396 --------EIRYWSINNGSCT--RVF---------KGGTAQMRFQPHLGRYLAA-AAE----NVVSILD----AETQACR 447 (567)
Q Consensus 396 --------~I~iwd~~~~~~~--~~~---------~~~~~~~~~~~~~~~l~~~-~~d----g~I~i~d----~~~~~~~ 447 (567)
.|++||+.+++.. ..+ ...+..++|+|++ .+++. ... ..|.+|| +.++++.
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999988753 111 1235678999995 45444 222 2588999 8887765
Q ss_pred EEe----cCCCCCee-----EEEEcCCCCEEEE--EeCC---eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 448 LSL----QGHTKPID-----SVCWDPSGELLAS--VSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 448 ~~~----~~h~~~V~-----~l~~sp~g~~l~s--~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
..+ .+|...+. .++|+|||+.|+. ...+ .|.+||+.++. ...+..+...+..+.+. +++.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEE
Confidence 544 46777776 8999999996554 3233 58888886653 33444455567777777 88888
Q ss_pred EEEEcC-----CeEEEEECCC--C--cEEEec----cccCCeeEEEEecCCCEEEEE-ECC--CcEEEcC
Q 008393 514 LVIGCY-----QSLELWNMSE--N--KTMTLT----AHEGLIAALAVSTETGYVASA-SHD--KFVKLWK 567 (567)
Q Consensus 514 ~~~~~d-----g~I~iwd~~~--~--~~~~~~----~h~~~V~~l~~spdg~~l~s~-s~D--g~I~iWd 567 (567)
+..+.+ +.+++|.+.. + +...+. +|...+..+.|+|++++|+.. +.+ ..+.+||
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 888765 6777777643 4 223332 266678899999999887754 332 3455554
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=5.6e-19 Score=179.78 Aligned_cols=265 Identities=11% Similarity=0.069 Sum_probs=183.0
Q ss_pred eEEEEeCC--CcEEEEeC--CCCeeeee--ec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC-CCCceeEEecc-C
Q 008393 301 LLATGGHD--KKAVLWHT--DTLKSKTN--LE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-NPGYSLRTFMG-H 371 (567)
Q Consensus 301 ~lasg~~d--g~I~vwd~--~~~~~~~~--l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~-h 371 (567)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+|++. + +........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeec
Confidence 45566553 46777765 45654322 11 233468899999999999999888 89999997 4 444332221 1
Q ss_pred CCcEEEEEEcCCCCe-EEEEEe-------------CCCcEEEEECC-CCeeeEEEe-------CCeeEEEEecCCCEEEE
Q 008393 372 SASVMSLDFHPNKDD-LICSCD-------------GDGEIRYWSIN-NGSCTRVFK-------GGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~-li~s~~-------------~dg~I~iwd~~-~~~~~~~~~-------~~~~~~~~~~~~~~l~~ 429 (567)
.+.+.+++|+|+++. +++++. .++.+.+|++. .++....+. .....++|+|++..+++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123556899999886 344543 68999999997 465543332 35778999999998887
Q ss_pred EEC-CCeEEEEECC-CCeEE--EEec--CCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCC--CCCC---ceEEEeec
Q 008393 430 AAA-ENVVSILDAE-TQACR--LSLQ--GHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGS--GSEG---ECVHELSC 496 (567)
Q Consensus 430 ~~~-dg~I~i~d~~-~~~~~--~~~~--~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~--~~~~---~~i~~~~~ 496 (567)
+.. ++.|.+||+. +++.. ..+. .|...+..++|+|+|++|++++. + .|.+|++.. +... ..+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 765 6899999998 67543 3333 24567899999999999988875 4 899998753 3211 01112211
Q ss_pred C----CC------ceEEEE-EeCCCCeEEEEEcC-C-----eEEEEECC-CCcEEE----eccccCCeeEEEEec---CC
Q 008393 497 N----GN------KFHSCV-FHPTYPSLLVIGCY-Q-----SLELWNMS-ENKTMT----LTAHEGLIAALAVST---ET 551 (567)
Q Consensus 497 ~----~~------~i~~~~-~sp~~~~l~~~~~d-g-----~I~iwd~~-~~~~~~----~~~h~~~V~~l~~sp---dg 551 (567)
. .. .+..++ |+|||++|+++..+ + .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 99999998887653 2 89999996 565442 223555678899999 89
Q ss_pred CEEEEEECC-CcEEEcC
Q 008393 552 GYVASASHD-KFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~D-g~I~iWd 567 (567)
++|++++.+ +.|+||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999865 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=8.4e-20 Score=187.10 Aligned_cols=270 Identities=12% Similarity=0.029 Sum_probs=187.1
Q ss_pred eEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 290 VICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
+.+++|+|||++|+..... ..|.+||+.+++.......+......+.|+|++++|+.++.++.|++||+.+ +....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEE
Confidence 6788999999998877543 4788999998876555444433333478999999999999999999999987 44444
Q ss_pred EeccCCCcEEE-------------------EEEcCCCCeEEEEE----eCCCcEEEEECCCCeeeEEEe--CCeeEEEEe
Q 008393 367 TFMGHSASVMS-------------------LDFHPNKDDLICSC----DGDGEIRYWSINNGSCTRVFK--GGTAQMRFQ 421 (567)
Q Consensus 367 ~~~~h~~~V~~-------------------l~~~p~~~~li~s~----~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~ 421 (567)
....+...... +.|+|+++.+++.. ..+..|++||+.+++...... .....+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 44434433222 34567766554332 456789999999987665543 346778899
Q ss_pred c-CCCEEEEEECC------CeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCC----e--EEEEeCCCCCC
Q 008393 422 P-HLGRYLAAAAE------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED----S--VRVWTVGSGSE 487 (567)
Q Consensus 422 ~-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d----~--I~iwd~~~~~~ 487 (567)
| ++..++.++.+ ..|.+||+..++........ ...+..++|+|+|++|+.++.+ . |++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 67777776653 46899998776543332211 2257789999999977766421 4 99999987632
Q ss_pred CceEEEeecCCCceEEEEEeC-CCCeEEEEE----------------cCCeEEEEECCCCcEEEeccccC----------
Q 008393 488 GECVHELSCNGNKFHSCVFHP-TYPSLLVIG----------------CYQSLELWNMSENKTMTLTAHEG---------- 540 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~----------------~dg~I~iwd~~~~~~~~~~~h~~---------- 540 (567)
..+..+. ... +.|+| ++++|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 123 79999 999887755 24689999999887666665554
Q ss_pred -CeeEEEEecCCCEEEEEEC-CCcEEEc
Q 008393 541 -LIAALAVSTETGYVASASH-DKFVKLW 566 (567)
Q Consensus 541 -~V~~l~~spdg~~l~s~s~-Dg~I~iW 566 (567)
.+..++|+|+|++|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998887765 5666665
No 160
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=4.2e-19 Score=173.39 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=159.7
Q ss_pred EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcC
Q 008393 304 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHP 382 (567)
Q Consensus 304 sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p 382 (567)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+.+........+ ...|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3457899999999988876 4556889999999999999999987 7899999998723334444444 46788999999
Q ss_pred CCCeEEEEEe-CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEE
Q 008393 383 NKDDLICSCD-GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 461 (567)
Q Consensus 383 ~~~~li~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~ 461 (567)
++..+++++. .++.+.+|.+. ..+++. ..+..+ ..+..++
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~-------------------------------------~~~~~~-~~~~~~-~~~~~~~ 135 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLP-------------------------------------STGGTP-RLMTKN-LPSYWHG 135 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEE-------------------------------------TTCCCC-EECCSS-SSEEEEE
T ss_pred CCCEEEEEEeCCCCcceEEEEE-------------------------------------CCCCce-EEeecC-CCccceE
Confidence 9886664432 23344444322 111111 122222 3478899
Q ss_pred EcCCCCEEE-EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECC--CCcEEEec
Q 008393 462 WDPSGELLA-SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS--ENKTMTLT 536 (567)
Q Consensus 462 ~sp~g~~l~-s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~--~~~~~~~~ 536 (567)
|+|++++|+ ++..+ .++||++.... .....+..+...+.+++|+|++++|++++. ++.+.+|++. .+....+.
T Consensus 136 ~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 136 WSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred ECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 999999877 56666 88888864321 234556667788999999999998888774 7788888764 45555777
Q ss_pred cccCCeeEEEEecCCCEEEEEECC-----------CcEEEcC
Q 008393 537 AHEGLIAALAVSTETGYVASASHD-----------KFVKLWK 567 (567)
Q Consensus 537 ~h~~~V~~l~~spdg~~l~s~s~D-----------g~I~iWd 567 (567)
.|...+.+++|+|++++|++++.+ +.|++||
T Consensus 214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 888889999999999999988876 4588885
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=5.1e-18 Score=172.33 Aligned_cols=276 Identities=12% Similarity=0.076 Sum_probs=201.8
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC----------CCcEEEEeCCCCeeeeeeccc----
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH---- 328 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----------dg~I~vwd~~~~~~~~~l~~h---- 328 (567)
|..+.+||..++ +.+..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+.++...
T Consensus 30 d~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 30 ESRVHVYDYTNG---KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GCEEEEEETTTC---CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred cCeEEEEECCCC---eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 445667776655 344556666555 8999999999998863 678999999999988887642
Q ss_pred --CccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 329 --SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 329 --~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
......++|+|+|++|+++.. ++.|.+||+.+ ...+.. +. +.. ...+.+.|++...+++.+.||.+.+|++.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 345678999999999998874 58899999998 555555 43 222 23466788876677788899999999987
Q ss_pred C-CeeeEEEe------C--CeeEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecCC----------CCCeeEEEE
Q 008393 404 N-GSCTRVFK------G--GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGH----------TKPIDSVCW 462 (567)
Q Consensus 404 ~-~~~~~~~~------~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h----------~~~V~~l~~ 462 (567)
. ++...... . ....+.+.+++..++..+.++.|.++|+.... ....+... ......++|
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 5 55442211 1 11122345667788888888999999987553 22222110 011223789
Q ss_pred cCCCCEEEEEeC-----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 463 DPSGELLASVSE-----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 463 sp~g~~l~s~s~-----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+++++.++++.. . .|.+||+.++ +.+..+..+. ...++|+|+|++|++++. +.|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 999887776643 3 7999999876 7788887766 899999999999998887 99999999999
Q ss_pred --cEEEe-ccccCCeeEEEEecCCC
Q 008393 531 --KTMTL-TAHEGLIAALAVSTETG 552 (567)
Q Consensus 531 --~~~~~-~~h~~~V~~l~~spdg~ 552 (567)
+.+.. ..+......++++|+|+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 87744 57778889999999986
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.2e-19 Score=194.51 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=174.8
Q ss_pred cCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCC-CcEEEEEEcCCCCeEEEEEeC---CCcEEEEEC
Q 008393 328 HSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDG---DGEIRYWSI 402 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~---dg~I~iwd~ 402 (567)
+...|.+++|+|||++||+++. ||+++||++++ +. ...+..|. ..|..++|+|+ .++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~-~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GE-TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TE-EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcC-CC-cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 99999999964 44 34555555 68999999998 57767764 454556544
Q ss_pred CC---CeeeEEEe--CCeeEEEEecCCCE-EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 403 NN---GSCTRVFK--GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 403 ~~---~~~~~~~~--~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
.. +... .+. ......+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcC
Confidence 32 2222 222 23456789999865 4555556666799999987765554333 789999999999976643
Q ss_pred ----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcEEEeccccCCeeEEE---
Q 008393 476 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTAHEGLIAALA--- 546 (567)
Q Consensus 476 ----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~h~~~V~~l~--- 546 (567)
.|++||+.++. ...+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcc
Confidence 59999998763 235567778889999999999999888888 89999999988776667777787777
Q ss_pred -----EecCCCEEEEEECCCcEEEcC
Q 008393 547 -----VSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 547 -----~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+|||.++++++.||.++||+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.1e-18 Score=194.68 Aligned_cols=263 Identities=12% Similarity=0.086 Sum_probs=190.7
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-----EEEEEECCCCCeEEEEeCC---------CcEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD---------KTVR 354 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-----V~~i~fsp~~~~l~s~s~d---------g~I~ 354 (567)
...+++|+|||++|+++ |+.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45589999999999886 999999999999988888877643 2447899999999999876 5667
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------------------
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------------------- 414 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-------------------- 414 (567)
+||+.+ +. ...+..|...+...+|+|||+.++++ .|+.|++|++.++...+....+
T Consensus 96 ~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 999997 44 34567788899999999999987754 3789999999988765432211
Q ss_pred -eeEEEEecCCCEEEEEECCC------------------------------------eEEEEECCC---C---eEEEEec
Q 008393 415 -TAQMRFQPHLGRYLAAAAEN------------------------------------VVSILDAET---Q---ACRLSLQ 451 (567)
Q Consensus 415 -~~~~~~~~~~~~l~~~~~dg------------------------------------~I~i~d~~~---~---~~~~~~~ 451 (567)
...+.|+|++..|+.+..|. .|++||+.+ + +.. .+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~ 250 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QIT 250 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EEC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Eec
Confidence 12478999999988875321 588899998 7 333 333
Q ss_pred ------CCCCCeeEEEEcCCCCEEEEEe----CC-eEEEEeCCCCCC---CceEEEe--ecCCCceE-----EEEEeCCC
Q 008393 452 ------GHTKPIDSVCWDPSGELLASVS----ED-SVRVWTVGSGSE---GECVHEL--SCNGNKFH-----SCVFHPTY 510 (567)
Q Consensus 452 ------~h~~~V~~l~~sp~g~~l~s~s----~d-~I~iwd~~~~~~---~~~i~~~--~~~~~~i~-----~~~~sp~~ 510 (567)
+|...+..++|+|||++++... .+ .|++||+.++.. ...+..+ ..+...+. ..+|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 3777899999999999766553 22 699999988751 0001111 23333333 67899999
Q ss_pred CeEE-EEEcC-C--eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 511 PSLL-VIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 511 ~~l~-~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+.|+ ..+.. | .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 9877 56543 3 799999998887777666666766543 44666554443
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=3.8e-18 Score=173.59 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=173.1
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeeccc-CccEEEEEECCCCCe--EEEEe-------------
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEH-SSLITDVRFSPSMPR--LATSS------------- 348 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~h-~~~V~~i~fsp~~~~--l~s~s------------- 348 (567)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34467789999999999999887 99999997 77765433211 123556899999994 45553
Q ss_pred CCCcEEEEEcCCCCceeEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeee--EEEe-----CCee
Q 008393 349 FDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCT--RVFK-----GGTA 416 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~~~~~--~~~~-----~~~~ 416 (567)
.++.+.+|+++..+.....+. .+...+.+++|+|+|+.++++...++.|++||+. +++.. ..+. ....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999985454433332 2567899999999998776555457899999998 67643 2332 2367
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEECC--CCeEEE---Eec---C----CCC------CeeEEE-EcCCCCEEEEEeC--
Q 008393 417 QMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRL---SLQ---G----HTK------PIDSVC-WDPSGELLASVSE-- 474 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~~~~---~~~---~----h~~------~V~~l~-~sp~g~~l~s~s~-- 474 (567)
.++|+|++..++++.. ++.|.+|+.. +++... .+. . |.. .+..++ |+|||++|+++..
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 7899999999888876 6899998765 555421 222 1 122 478999 9999998877653
Q ss_pred C-----eEEEEeCC-CCCCCceEE-EeecCCCceEEEEEeC---CCCeEEEEEcC-CeEEEEECCCC
Q 008393 475 D-----SVRVWTVG-SGSEGECVH-ELSCNGNKFHSCVFHP---TYPSLLVIGCY-QSLELWNMSEN 530 (567)
Q Consensus 475 d-----~I~iwd~~-~~~~~~~i~-~~~~~~~~i~~~~~sp---~~~~l~~~~~d-g~I~iwd~~~~ 530 (567)
+ .|.+|++. ++. ...+. ....+......++|+| +|++|++++.+ +.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 69999996 332 12111 2333444566789999 89999999875 89999998766
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=6.3e-18 Score=169.80 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=177.2
Q ss_pred CCCccceeccCCccceeeeeeccCC-CCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeeccc------CccEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEH------SSLITD 334 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h------~~~V~~ 334 (567)
+..+.+||..++ +.+..+..+. ..+..++|+|||++++ ++..++.|.+||+.+++.+..+..+ ...+.+
T Consensus 20 ~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence 446778887766 3444444332 2577999999998665 4556899999999999988777633 234788
Q ss_pred EEECCCCCeEEEEeCC------------CcEEEEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 335 VRFSPSMPRLATSSFD------------KTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 335 i~fsp~~~~l~s~s~d------------g~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
++|+|++++|++++.+ +.|.+||+.+.. ..+..+. +...+.+++|+|+++ +++ ++ +.|++|
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~ 171 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKM 171 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEE
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEE
Confidence 9999999999998865 899999998622 1223333 344688999999988 654 43 349999
Q ss_pred ECCCCeeeEEEeCCe---------------------------eEEEEecCCCEEEEEE-CCCeEEEEECCCCeEE-EEec
Q 008393 401 SINNGSCTRVFKGGT---------------------------AQMRFQPHLGRYLAAA-AENVVSILDAETQACR-LSLQ 451 (567)
Q Consensus 401 d~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~-~~~~ 451 (567)
|+.+++.+..+..+. ..+.+.+++....... ....+..+|..+++.. ..+.
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 999998887765331 1233333321110000 0112223555554322 2233
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 452 GHTKPIDSVCWDP-SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 452 ~h~~~V~~l~~sp-~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.+...+.+++|+| ++++|+++ .+.|.+||+.++ +.+..+.. ...+..++|+|++++|++++.++.|++||+.++
T Consensus 252 ~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 3566788999999 99999988 449999999876 45555543 345678999999999999888899999999998
Q ss_pred cEE
Q 008393 531 KTM 533 (567)
Q Consensus 531 ~~~ 533 (567)
+.+
T Consensus 327 ~~~ 329 (349)
T 1jmx_B 327 EKV 329 (349)
T ss_dssp EEE
T ss_pred cee
Confidence 876
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=1.7e-18 Score=180.34 Aligned_cols=210 Identities=13% Similarity=0.185 Sum_probs=157.4
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC-------C--ceeE-----EeccCCCc
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP-------G--YSLR-----TFMGHSAS 374 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~-------~--~~~~-----~~~~h~~~ 374 (567)
+.|++|+.... .....++.+++++++.+|++++.|+ |+||+.... . ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 45777754311 1334588999999999999999998 999875320 0 0111 11235678
Q ss_pred EEEEEEcCCCCeEEE---EEeCCCcEEEEECCCC--------ee---eEEE---eCCeeEEEEecC-CCEEEEEECCCeE
Q 008393 375 VMSLDFHPNKDDLIC---SCDGDGEIRYWSINNG--------SC---TRVF---KGGTAQMRFQPH-LGRYLAAAAENVV 436 (567)
Q Consensus 375 V~~l~~~p~~~~li~---s~~~dg~I~iwd~~~~--------~~---~~~~---~~~~~~~~~~~~-~~~l~~~~~dg~I 436 (567)
|.+++|+|++..+++ +++.|+.|++||+.++ +. +..+ ...+.+++|+|+ +..+++++.|+.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999887665 7888999999998764 22 2222 346889999998 6788889999999
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-------CCceEEEEEeC
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHP 508 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------~~~i~~~~~sp 508 (567)
++||++++..+....+|...|.+++|+|+|++|++++.| .|++||++ + .....+..+ ...+.++.|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 999999998777777889999999999999999999999 99999997 3 233333322 23789999999
Q ss_pred CCCeEEEEE-cCC------eEEEEECCCC
Q 008393 509 TYPSLLVIG-CYQ------SLELWNMSEN 530 (567)
Q Consensus 509 ~~~~l~~~~-~dg------~I~iwd~~~~ 530 (567)
++.++++.+ .+| .+++|++.+.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 887775543 333 4999999865
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=1.9e-17 Score=168.13 Aligned_cols=262 Identities=9% Similarity=0.043 Sum_probs=188.1
Q ss_pred CCCeEEEEe------CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC----------CCcEEEEEcCCC
Q 008393 298 DGKLLATGG------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~------~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~----------dg~I~iwd~~~~ 361 (567)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+|++++|+++.. ++.|.+||+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t- 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK- 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-
Confidence 445555543 3789999999999999888877655 8999999999998863 67799999987
Q ss_pred CceeEEeccC------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEE-EeCC-eeEEEEecCC-CEEEEEE
Q 008393 362 GYSLRTFMGH------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGG-TAQMRFQPHL-GRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~-~~~~-~~~~~~~~~~-~~l~~~~ 431 (567)
.+.+..+... ......++|+|+|++++++... ++.|.+||+.+++.+.. +..+ ...+.+.|++ ..+++.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 5555555422 3456789999999988866544 68999999999988877 5432 2235567765 5677888
Q ss_pred CCCeEEEEECCC-CeEEEE------ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-----
Q 008393 432 AENVVSILDAET-QACRLS------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG----- 498 (567)
Q Consensus 432 ~dg~I~i~d~~~-~~~~~~------~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~----- 498 (567)
.||.+.+|+... ++.... +..+..++ .+.+++++..++..+.+ .|.++|+.... ...+..+....
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCccccc
Confidence 899999999865 554422 22222232 33446777777777777 99999997542 12222221110
Q ss_pred -----CceEEEEEeCCCCeEEEEEc-----------CCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 499 -----NKFHSCVFHPTYPSLLVIGC-----------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 499 -----~~i~~~~~sp~~~~l~~~~~-----------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
.....++|+|++++++++.. .+.|.+||+.+++.+ .+..+. +.+++|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 11112689999998888764 348999999999887 555555 999999999999998887 9
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.|.+||
T Consensus 326 ~v~v~D 331 (361)
T 2oiz_A 326 NVNVYD 331 (361)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.2e-17 Score=186.15 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=176.7
Q ss_pred EEEEEcCCCCeEEEEeCC---------CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 291 ICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~d---------g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++|++.++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 358899999999998876 56779999998865 4677788899999999999999885 678999999874
Q ss_pred CceeEEeccCCCcE-----------------EEEEEcCCCCeEEEEEeCCC-----------------------------
Q 008393 362 GYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDG----------------------------- 395 (567)
Q Consensus 362 ~~~~~~~~~h~~~V-----------------~~l~~~p~~~~li~s~~~dg----------------------------- 395 (567)
.....+..++...+ ..+.|+|||+.|++....++
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 33222233333333 34899999998776543222
Q ss_pred ------cEEEEECCC---C---eeeEEEe--------CCeeEEEEecCCCEEEEEECC----CeEEEEECCCCe----EE
Q 008393 396 ------EIRYWSINN---G---SCTRVFK--------GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQA----CR 447 (567)
Q Consensus 396 ------~I~iwd~~~---~---~~~~~~~--------~~~~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~----~~ 447 (567)
.|++||+.+ + +...... ..+..+.|+|++..++..... ..|.+||+.+++ +.
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 588899988 7 3333221 124678899998766555432 379999998876 22
Q ss_pred E--Ee--cCCCCCee-----EEEEcCCCCEEE-EEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 448 L--SL--QGHTKPID-----SVCWDPSGELLA-SVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 448 ~--~~--~~h~~~V~-----~l~~sp~g~~l~-s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
. .+ ..|...|. .+.|+|||+.|+ ..+.. .|++||+.++. ...+......+..+. .++++.|
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----~~~lT~g~~~v~~~~-~~d~~~i 377 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CTFITKGTWEVIGIE-ALTSDYL 377 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----CEESCCSSSCEEEEE-EECSSEE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----eEecccCCEEEEEEE-EEeCCEE
Confidence 1 11 44665554 789999999877 66532 69999987642 223333344455443 2447777
Q ss_pred EEEEcC-------CeEEEEECCCCcEE-Eec----cccCCeeEEEEecCCCEEEEEEC
Q 008393 514 LVIGCY-------QSLELWNMSENKTM-TLT----AHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 514 ~~~~~d-------g~I~iwd~~~~~~~-~~~----~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+..+.. ..|+..++.++... .+. .....+..+.|+|++++++....
T Consensus 378 ~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 378 YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 766654 25666677665443 232 12356889999999998765543
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=6.7e-17 Score=161.89 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCC------------------------CcEEEEeCCCCeeeeeec-ccCccEEEEEECCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHD------------------------KKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSM 341 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~d------------------------g~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~ 341 (567)
-+.|.+++++++|+++++...+ +.|.+||..+++.+..+. .+-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888777 479999999998877665 455678999999999
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEe---------ccCCCcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeEEE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTF---------MGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~~~~ 411 (567)
+++++...++.|++||.+.....+..+ .++......|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987532245555 345557899999994455666775 689999999 566666665
Q ss_pred eC-------------CeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEE---
Q 008393 412 KG-------------GTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV--- 472 (567)
Q Consensus 412 ~~-------------~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~--- 472 (567)
.. ....++++++++.++++. .++.|.+||..+++.+..+. .+...+..++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 31 267799999966666555 57899999999888888874 4566788999999 4333332
Q ss_pred ----eCC-eEEEEeCCCCCCCceEEEe---ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 473 ----SED-SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 473 ----s~d-~I~iwd~~~~~~~~~i~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..+ .|++||+.++ +.+..+ ..+......++++++|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 334 7999999877 455555 35566789999999997666667788999999754
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=1.1e-17 Score=183.88 Aligned_cols=281 Identities=13% Similarity=0.102 Sum_probs=194.6
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEE--eCCCcEEEEeCCCCeeeeeecccCccEE---------EEEEC--CCCCe-EEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKTNLEEHSSLIT---------DVRFS--PSMPR-LAT 346 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg--~~dg~I~vwd~~~~~~~~~l~~h~~~V~---------~i~fs--p~~~~-l~s 346 (567)
..+.+|...|..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ ||+++ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999887667766 5588899998655555666776766666 66665 99998 777
Q ss_pred EeC-CCcEEEEEcCCCC-ceeEEecc-----CCCcEEEEEEcCCCCeEEEEEeCC----------CcEEEEECCC-----
Q 008393 347 SSF-DKTVRVWDADNPG-YSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGD----------GEIRYWSINN----- 404 (567)
Q Consensus 347 ~s~-dg~I~iwd~~~~~-~~~~~~~~-----h~~~V~~l~~~p~~~~li~s~~~d----------g~I~iwd~~~----- 404 (567)
++. +..|.+|++...+ .....+.. |...+.+++|+|||+.++++. .+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCcccc
Confidence 664 4556666665001 23455555 677889999999998777554 34 5899999988
Q ss_pred -CeeeEEE-e--CCeeEEEEecCCCEEEEEECC--------CeEEEEECC-CC---eEEEEecCCCCCeeEEEEcCCCCE
Q 008393 405 -GSCTRVF-K--GGTAQMRFQPHLGRYLAAAAE--------NVVSILDAE-TQ---ACRLSLQGHTKPIDSVCWDPSGEL 468 (567)
Q Consensus 405 -~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~d--------g~I~i~d~~-~~---~~~~~~~~h~~~V~~l~~sp~g~~ 468 (567)
++..... . .....+.|+|++..++.++.+ ..|++||+. ++ +......+|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5544333 2 234557899999999888754 379999999 56 454444556788999999999997
Q ss_pred EEEEeCC---eEEEEeCCCCCCCceEEEeecCCCc--------eEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEEe
Q 008393 469 LASVSED---SVRVWTVGSGSEGECVHELSCNGNK--------FHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTL 535 (567)
Q Consensus 469 l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~--------i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~ 535 (567)
++++..+ .|.+||+.++. .......+... +..++|++++.+++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 7777665 46666665442 22222222111 456789999998888888 887887 7777777677
Q ss_pred ccccCCeeEE-EEecCCCEEEEEECCCcEEEc
Q 008393 536 TAHEGLIAAL-AVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 536 ~~h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW 566 (567)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7787778777 554433344455556555554
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.6e-17 Score=169.87 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=164.2
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE--ECCCCCeEEEEe-------------
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR--FSPSMPRLATSS------------- 348 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~--fsp~~~~l~s~s------------- 348 (567)
.+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+.... +++++++|+...
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 34444555678999999999999999999999999988777776766665444 489999887432
Q ss_pred ---------CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcC-CCCeEEEEEeC-----CCcEEEEECCCCeeeEEEeC
Q 008393 349 ---------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDG-----DGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 349 ---------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~li~s~~~-----dg~I~iwd~~~~~~~~~~~~ 413 (567)
.+..|++||+.+ +. ...+..+...+..+.|+| ++..++++... ...|.++|+..+........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKT-GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTT-CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred hhhhhhccCCcceEEEEECCC-Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 346799999987 33 344555677899999999 88777655532 34788888876654433332
Q ss_pred C----eeEEEEecCCCEEEEEEC-CC----eEEEEECCCCeEEE--EecCCCC---CeeEEEEcCCCCEEEEE-------
Q 008393 414 G----TAQMRFQPHLGRYLAAAA-EN----VVSILDAETQACRL--SLQGHTK---PIDSVCWDPSGELLASV------- 472 (567)
Q Consensus 414 ~----~~~~~~~~~~~~l~~~~~-dg----~I~i~d~~~~~~~~--~~~~h~~---~V~~l~~sp~g~~l~s~------- 472 (567)
. +....|+|++..++..+. ++ .|++||+.+++... .+.++.. ....++|+|||+.|+..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence 2 446789999998866554 22 39999999986433 3332100 01223799999988754
Q ss_pred --eCC-eEEEEeCCCCCCCceEEEeecCCC-----------ceEEEEEeCCCCeEEEEEc-CC--eEEEEECCC
Q 008393 473 --SED-SVRVWTVGSGSEGECVHELSCNGN-----------KFHSCVFHPTYPSLLVIGC-YQ--SLELWNMSE 529 (567)
Q Consensus 473 --s~d-~I~iwd~~~~~~~~~i~~~~~~~~-----------~i~~~~~sp~~~~l~~~~~-dg--~I~iwd~~~ 529 (567)
..+ .|++||+.++ .+..+..+.. .+..++|+|||+.|+..+. ++ .|+++++..
T Consensus 315 ~~~~~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNG----TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp --CCCCEEEEEETTTT----EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred ccCCCCEEEEEeccCC----ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 334 8999999875 2334444444 4677899999998888775 44 455555543
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.77 E-value=1.5e-16 Score=160.09 Aligned_cols=251 Identities=12% Similarity=0.077 Sum_probs=175.3
Q ss_pred CeEEEEEcCCCCeEEEEe---------CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---C--cEE
Q 008393 289 KVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K--TVR 354 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~---------~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g--~I~ 354 (567)
.+..+++ ||++++... .++.|++||+.+++... + ..+..+.|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4566777 888887642 26789999999877543 3 568899999999999888754 3 377
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC--------------------------CCcEEEEECCCCeee
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--------------------------DGEIRYWSINNGSCT 408 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~--------------------------dg~I~iwd~~~~~~~ 408 (567)
+||+.+ +....... +.. +..++|+|+++.++++... ...|++||+.+++.+
T Consensus 89 ~~~~~~-g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLET-LSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTT-TEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCC-CceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876 44433333 334 9999999999888866532 357999999998763
Q ss_pred EEEe-CCeeEEEEecCCCEEEEEECC---------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---
Q 008393 409 RVFK-GGTAQMRFQPHLGRYLAAAAE---------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--- 475 (567)
Q Consensus 409 ~~~~-~~~~~~~~~~~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--- 475 (567)
..+. ..+..+.|+|++ .++++..+ ..|.++| +++.. .+..+ ..+..+ +|+|++|+.++.+
T Consensus 166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 3332 267788999998 66655443 2456666 55543 33334 445444 9999988877632
Q ss_pred ------eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 476 ------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
.|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+.+.|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence 577787 33 233333344566775 8999 88 88888999999999 8766666666677889999999
Q ss_pred cCCCEEEEEECCCcE-EEc
Q 008393 549 TETGYVASASHDKFV-KLW 566 (567)
Q Consensus 549 pdg~~l~s~s~Dg~I-~iW 566 (567)
+ .++++++.++.. .||
T Consensus 311 ~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 311 E--IVVYLKETATRLRELF 327 (347)
T ss_dssp S--SEEEEEECSSSCCEEE
T ss_pred C--cEEEEEcCCCChHHhe
Confidence 9 677777777654 555
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1.8e-16 Score=158.59 Aligned_cols=266 Identities=11% Similarity=0.083 Sum_probs=188.9
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||.++ +.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEE
Confidence 456788899998888777888999999 4566677777778889999999999888888899999999987 443333
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEEEEEC------
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA------ 432 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~d----g~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~------ 432 (567)
...+...+.++++++++. ++++...+ +.|.+||..++.....+. .....+.+++++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335677899999999986 55455555 689999998877654433 23577889998765554443
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCC-CCCCceE-----EEeecCCCceEEE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGS-GSEGECV-----HELSCNGNKFHSC 504 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~-~~~~~~i-----~~~~~~~~~i~~~ 504 (567)
.+.|..||..+++..... .+...+..++|+++|++|+.+. .+ .|.+||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 357888887766544322 2334578999999998665554 44 899999964 2221111 11111 2467889
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccC------CeeEEEEecCCCEEEEEECC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG------LIAALAVSTETGYVASASHD 560 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~------~V~~l~~spdg~~l~s~s~D 560 (567)
+++++|+++++...++.|.+||........+..+.. .+.+++|+++++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877777778899999985433334433322 68999999998777666555
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=6.7e-16 Score=151.02 Aligned_cols=237 Identities=11% Similarity=0.118 Sum_probs=169.7
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec------ccCccEEEEEE-CCCCCeEEEEeC-CCcEEE
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRF-SPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~------~h~~~V~~i~f-sp~~~~l~s~s~-dg~I~i 355 (567)
.+|-..+.+++++++|+++++...++.|.+||.+ ++.+..+. ++...+..+++ .+++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556778999999999988888889999999987 56665553 34467899999 466765555543 789999
Q ss_pred EEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 356 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 356 wd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
||.+ +..+..+. .+...+.++++.+++. ++++...++.|++||.. ++.+..+.
T Consensus 105 ~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~---------------------- 158 (286)
T 1q7f_A 105 YNQY--GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFG---------------------- 158 (286)
T ss_dssp ECTT--SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEE----------------------
T ss_pred ECCC--CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeC----------------------
Confidence 9954 44455553 3446789999999875 66576677888888854 22221110
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeCCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYP 511 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~ 511 (567)
...+...+..|+++++|+++++...+ .|++||... ..+..+... ...+..++++++|.
T Consensus 159 ---------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 159 ---------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp ---------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCC
T ss_pred ---------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCC
Confidence 01234567899999999977777666 999999743 345555433 25688999999998
Q ss_pred eEEEEEcCC-eEEEEECCCCcEEEecccc--CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQ-SLELWNMSENKTMTLTAHE--GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg-~I~iwd~~~~~~~~~~~h~--~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++...++ .|.+||........+..+. ..+.+++++|+|+++++ +.|+.|++|+
T Consensus 220 l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 777776675 9999997544443444333 34779999999987776 6799999995
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.76 E-value=5e-15 Score=158.33 Aligned_cols=297 Identities=12% Similarity=0.055 Sum_probs=214.2
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEEC---
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS--- 338 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fs--- 338 (567)
..+.++|..++ +.+..+.. ...+.+++|+|||++|++++.|+.|.+||+. +++.+.++.... ....++|+
T Consensus 177 ~~V~viD~~t~---~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~ 251 (567)
T 1qks_A 177 GQIALIDGSTY---EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKME 251 (567)
T ss_dssp TEEEEEETTTC---CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCST
T ss_pred CeEEEEECCCC---eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEcccc
Confidence 34566776655 34444443 2356699999999999999999999999996 888888887544 36799999
Q ss_pred -CCCCeEEEEeC-CCcEEEEEcCCCCceeEEecc----------C-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 339 -PSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG----------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 339 -p~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
|+|+++++++. ++.|.|+|..+ .+.+..+.. | ...+..+.+++++..+++....+|.|.++|....
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred CCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 69998887765 58999999987 555554431 2 2268889999988888888888899999999876
Q ss_pred eeeEE--Ee--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC-----CCCCeeEEEEcCCCC-EEEEEe-
Q 008393 406 SCTRV--FK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGE-LLASVS- 473 (567)
Q Consensus 406 ~~~~~--~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-----h~~~V~~l~~sp~g~-~l~s~s- 473 (567)
+.... +. .....+.|+|++.+++++.. ++.|.++|+.+++.+..+.. |.+.-..+ ++|++. ++++..
T Consensus 331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM 409 (567)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence 53332 22 24457789999999888775 78999999999988776653 33222222 578754 444543
Q ss_pred CC-eEEEEeCCCCCC----CceEEEeecCCCceEEEEEeCCCCeEEEEEc-------CCeEEEEECCCC-----c-E-EE
Q 008393 474 ED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMSEN-----K-T-MT 534 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-------dg~I~iwd~~~~-----~-~-~~ 534 (567)
.+ .|.++|..+.+. .+.+..+......-..+.++|++++|++... .+.|.+||+.+. . . ..
T Consensus 410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~ 489 (567)
T 1qks_A 410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 489 (567)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence 33 899999987332 4677777765544455688999999999773 359999999876 2 1 12
Q ss_pred ec--------cccCCeeEEEEecCCCEEEEEEC-----CCcEEEcC
Q 008393 535 LT--------AHEGLIAALAVSTETGYVASASH-----DKFVKLWK 567 (567)
Q Consensus 535 ~~--------~h~~~V~~l~~spdg~~l~s~s~-----Dg~I~iWd 567 (567)
+. .....+..+.|+++|++|..+.+ ++.|.|+|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 21 12356889999999998776643 67887765
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=8.4e-16 Score=153.87 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=171.6
Q ss_pred CccEEEEEECCCCCeEEEEeCC------------------------CcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCC
Q 008393 329 SSLITDVRFSPSMPRLATSSFD------------------------KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 383 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~d------------------------g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~ 383 (567)
-..+.+|+++++|+++++...+ +.|.+||..+ +..+..+. ++...+..|+++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCC
Confidence 4569999999999988888777 4799999987 44444443 45568999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCe-eeEEEeC------------CeeEEEEec-CCCEEEEEE-CCCeEEEEECCCCeEEE
Q 008393 384 KDDLICSCDGDGEIRYWSINNGS-CTRVFKG------------GTAQMRFQP-HLGRYLAAA-AENVVSILDAETQACRL 448 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~------------~~~~~~~~~-~~~~l~~~~-~dg~I~i~d~~~~~~~~ 448 (567)
+. ++++...++.|++||..... .+..+.. ....++++| ++..+++.+ .++.|.+|| .+++.+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 66688888999999986553 4554421 467899999 544455544 589999999 5666666
Q ss_pred EecCC----------CCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEee--cCCCceEEEEEeCCCCeEE
Q 008393 449 SLQGH----------TKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 449 ~~~~h----------~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~--~~~~~i~~~~~sp~~~~l~ 514 (567)
.+... -.....|+++++ +.++++...+ .|++||..++ +.+..+. .....+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999998 6666666666 9999999765 4555553 3456788899999 33222
Q ss_pred EE-------EcCCeEEEEECCCCcEEEe----ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 515 VI-------GCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~-------~~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+. ..+..|++||+.+++.+.. ..+...+..|+++|+|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2334899999999988844 36777899999999998888888899999985
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=1.5e-15 Score=152.62 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=162.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCC---C--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC------------
Q 008393 288 SKVICCHFSSDGKLLATGGHD---K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------ 350 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~d---g--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d------------ 350 (567)
..+.+++|+|||++||.++.+ + .|.+|++.+++.......+ . +..+.|+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 568899999999999987754 2 4888899888766555444 3 9999999999998888642
Q ss_pred ---------------CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-------cEEEEECCCCeee
Q 008393 351 ---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------EIRYWSINNGSCT 408 (567)
Q Consensus 351 ---------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-------~I~iwd~~~~~~~ 408 (567)
..|++||+.+ +..+..+.. . .+..+.|+|++ +++++..+. ...+|.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTT-TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cceeecCcccccCccceEEEEECCC-CeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 5689999987 444244443 3 78899999998 665665442 3344443355544
Q ss_pred EEEeCCeeEEEEecCCCEEEEEECC--------CeEEEEECCCCeEEEEecCCCCCeeE-EEEcCCCCEEEEEeCC-eEE
Q 008393 409 RVFKGGTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDS-VCWDPSGELLASVSED-SVR 478 (567)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~V~~-l~~sp~g~~l~s~s~d-~I~ 478 (567)
..... .....++|++..+++++.+ ..|++|| +++.......+...+.. +.|+ ++ ++++++.+ .++
T Consensus 212 ~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 212 KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence 43333 3334459999988887754 4788888 66655555566777886 9999 88 88888888 899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE-EEEECCCCcEEEeccccCC
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL-ELWNMSENKTMTLTAHEGL 541 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I-~iwd~~~~~~~~~~~h~~~ 541 (567)
|| +.++ .. ..+..+...+..++|++ ..+++++.++.. .||.+. ++...+..|...
T Consensus 287 l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 287 LY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp EE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred EE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 99 8733 33 33344467789999999 667777776643 566555 655566665543
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=7.8e-14 Score=136.57 Aligned_cols=272 Identities=9% Similarity=-0.012 Sum_probs=191.6
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee-eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||...
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 34556789999999999988777668899999988 55433 2233557799999999998888777788899999863
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-e---CCeeEEEEecCCCEEEEEECCCeEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K---GGTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
......+......+.++++.+++. ++++...++.|.+||. +++..... . .....+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 322222223456789999999875 5556666889999998 55544332 2 2457788898876555555578999
Q ss_pred EEECCCCeEEEE-ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 438 ILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 438 i~d~~~~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
.||. +++.... +..+...+.+++++++|+++++...+ .|.+||. ++.. . ...+......+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-T-EFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-E-EEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6655432 33445678899999999977766555 8999998 5421 1 1222334567889999999984444
Q ss_pred EEcCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 516 IGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4544433 345567999999 8888777665454444
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=5.5e-16 Score=170.35 Aligned_cols=251 Identities=10% Similarity=0.041 Sum_probs=168.9
Q ss_pred eeeeccCCCCeE---------EEEEc--CCCCe-EEEEeC-CCcEEEEeCC--CCeeeeeecc-----cCccEEEEEECC
Q 008393 280 ANSVRASTSKVI---------CCHFS--SDGKL-LATGGH-DKKAVLWHTD--TLKSKTNLEE-----HSSLITDVRFSP 339 (567)
Q Consensus 280 ~~~l~~h~~~V~---------~l~~s--~dg~~-lasg~~-dg~I~vwd~~--~~~~~~~l~~-----h~~~V~~i~fsp 339 (567)
...+..|...|. ..+|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 344555555544 55555 99998 776654 5677777775 2033445555 677899999999
Q ss_pred CCCeEEEEeCC----------CcEEEEEcCCCC----ceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCC-------CcE
Q 008393 340 SMPRLATSSFD----------KTVRVWDADNPG----YSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD-------GEI 397 (567)
Q Consensus 340 ~~~~l~s~s~d----------g~I~iwd~~~~~----~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~d-------g~I 397 (567)
||+.|++++.+ ..|++||+.+.. .....+. .+...+..++|+|||+.++++.... ..|
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 99999998877 579999998621 3345565 6667888999999998877555432 479
Q ss_pred EEEECC-CC---eeeEEEe---CCeeEEEEecCCCEEEEEECCC--eEEEEECCCCeEEEEecCCCCC--------eeEE
Q 008393 398 RYWSIN-NG---SCTRVFK---GGTAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQGHTKP--------IDSV 460 (567)
Q Consensus 398 ~iwd~~-~~---~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~--------V~~l 460 (567)
++||+. ++ +...... .....+.|+|++..++++..++ .|++||+.+++.......+... +..+
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceE
Confidence 999999 56 4444333 3567789999999555555566 7888888777765444333222 5678
Q ss_pred EEcCCCCEEEEEeCCeEEEE--eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE--EEcCC--eEEEEECCCCcEEE
Q 008393 461 CWDPSGELLASVSEDSVRVW--TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV--IGCYQ--SLELWNMSENKTMT 534 (567)
Q Consensus 461 ~~sp~g~~l~s~s~d~I~iw--d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~--~~~dg--~I~iwd~~~~~~~~ 534 (567)
+|++++++++++..+.++|| |+.++ .+..+..+...+..+ +++++..++. ++.+. .|++||+.+++...
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 300 APLANGLIAVVHGKGAAVLGILDPESG----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EECTTSCEEEEEBSSSCEEEEEETTTT----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred eEeCCCEEEEEEEcCccEEEEEECCCC----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 99999999888876655666 65443 356666666667665 1444544433 33333 67778888877664
Q ss_pred e
Q 008393 535 L 535 (567)
Q Consensus 535 ~ 535 (567)
+
T Consensus 375 l 375 (662)
T 3azo_A 375 I 375 (662)
T ss_dssp E
T ss_pred e
Confidence 4
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=5.8e-15 Score=147.70 Aligned_cols=249 Identities=10% Similarity=0.006 Sum_probs=184.4
Q ss_pred CCCcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEE
Q 008393 307 HDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 380 (567)
.++.|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+ .+.+..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEE
Confidence 47899999999998876652 122446778774 344555566679999999998 56666664 4567899999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEe
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSL 450 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~ 450 (567)
++++ .++++...++.|.+||..+++....+.. ....+++ +++.++++.. ++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 6665665799999999999998877653 2345666 5677777763 789999999999988877
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeC-----------CeEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEc
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSE-----------DSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~-----------d~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~ 518 (567)
... .....++++++|++++++.. +.|.+||..++ +....+... ......++|+|++++|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 653 34578999999997777654 37999999776 444444432 346889999999999988765
Q ss_pred CCeEEEEECCCCcEEE---eccccCCeeEEEEec-CCCEEEEE----ECCCcEEEcC
Q 008393 519 YQSLELWNMSENKTMT---LTAHEGLIAALAVST-ETGYVASA----SHDKFVKLWK 567 (567)
Q Consensus 519 dg~I~iwd~~~~~~~~---~~~h~~~V~~l~~sp-dg~~l~s~----s~Dg~I~iWd 567 (567)
.|++||..+++... +..+......++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 112246788999999 45555555 4678899886
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=2.1e-15 Score=167.15 Aligned_cols=243 Identities=8% Similarity=0.021 Sum_probs=176.0
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCC-----cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc-------
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 352 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg-----~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~------- 352 (567)
+|+..+..++|||||++||.+..++ .|++||+.+++.+.....+. .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555688999999999999876543 89999999998776433222 2678999999999999988766
Q ss_pred ---------EEEEEcCCCCce-eEEec--cCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCC------Ce-eeE
Q 008393 353 ---------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN------GS-CTR 409 (567)
Q Consensus 353 ---------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~------~~-~~~ 409 (567)
|++|++.++... ...+. .|...+..+.|+|+|+.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999874321 22223 355668899999999988866542 57899999986 42 233
Q ss_pred EEeCC--eeEEEEecCCCEEEEEECC----CeEEEEECCCCe--EEEEecCCCC--CeeEEEEcCCCCEEEEEeCC---e
Q 008393 410 VFKGG--TAQMRFQPHLGRYLAAAAE----NVVSILDAETQA--CRLSLQGHTK--PIDSVCWDPSGELLASVSED---S 476 (567)
Q Consensus 410 ~~~~~--~~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~--~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d---~ 476 (567)
.+..+ .....|+++++.+++.+.. ..|.+||+.++. ....+..|.. .+..++|++++.++++...+ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 33321 2233588999988887763 369999998864 1234444443 67889999888888888766 4
Q ss_pred EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCc
Q 008393 477 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENK 531 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~ 531 (567)
|++|++.++ ..+..+..+...+..+.++|++..|+..... +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 777787555 4556666667778889999999877655433 589999998877
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=5.9e-14 Score=140.23 Aligned_cols=243 Identities=12% Similarity=0.090 Sum_probs=173.6
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC----CcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d----g~I~ 354 (567)
.+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 445566777788999999999988888889999999999887766554567789999999999888777666 6899
Q ss_pred EEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEe--CCeeEEEEecCC
Q 008393 355 VWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL 424 (567)
Q Consensus 355 iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~ 424 (567)
+||.++. .....+. .+...+.+++++|++. ++++... .+.|..||..+++...... .....++|++++
T Consensus 116 ~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 116 AATENGD-NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EECTTSC-SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEeCCCC-EEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9998863 3222222 3456799999999986 4444442 3567777776655443322 346788999998
Q ss_pred CEEEEEE-CCCeEEEEECCC-CeEEE--------EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 425 GRYLAAA-AENVVSILDAET-QACRL--------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 425 ~~l~~~~-~dg~I~i~d~~~-~~~~~--------~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
..++++. .++.|.+||..+ +..+. .+.++ ..+..++++++|+++++...+ .|.+||.. + ..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~ 268 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ 268 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence 8776665 478999999964 22111 12222 467889999999988887776 89999984 3 34455
Q ss_pred eecCCC------ceEEEEEeCCCCeEEEEEcCC------eEEEEECC
Q 008393 494 LSCNGN------KFHSCVFHPTYPSLLVIGCYQ------SLELWNMS 528 (567)
Q Consensus 494 ~~~~~~------~i~~~~~sp~~~~l~~~~~dg------~I~iwd~~ 528 (567)
+..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 544332 578899999988888777663 45555554
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.4e-14 Score=142.34 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=170.1
Q ss_pred eeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
..+..+..+.....+++|+|+++ +++++..++.|.+||..+ + ...+..+...+.++++++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33444555666788999999998 778888899999999987 3 566667788899999999986 555666678999
Q ss_pred EEECCCCeeeEEEeC-------CeeEEEEecCCCEEEEE----E-------------CCCeEEEEECCCCeEEEEecCCC
Q 008393 399 YWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAA----A-------------AENVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 399 iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~----~-------------~dg~I~i~d~~~~~~~~~~~~h~ 454 (567)
+||..+++....... ....+++++++..+++. . ..+.|..+|.. ++.. .+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCC
Confidence 999988876544321 23568899988766652 2 13577777776 4433 344566
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCC-CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~-~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
.....++|+|+|++|++.+.+ .|++|++. ++........+......+..++++++|++++ +. ++.|.+||......
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCEE
Confidence 678899999999988666666 99999996 3321011222233444567789999998544 44 88999999974444
Q ss_pred EEeccccCCeeEEEE-ecCCCEEEEEECCCcEEE
Q 008393 533 MTLTAHEGLIAALAV-STETGYVASASHDKFVKL 565 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~-spdg~~l~s~s~Dg~I~i 565 (567)
..+..+.. +++++| .++++.|++++.++.+++
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 45666666 999999 589999998888865554
No 184
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=1.6e-13 Score=139.43 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=183.2
Q ss_pred EcCCCCeEEEEeC--CC---cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcC
Q 008393 295 FSSDGKLLATGGH--DK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDAD 359 (567)
Q Consensus 295 ~s~dg~~lasg~~--dg---~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~ 359 (567)
..++++++++... .. .|.+||..+++.+.++...... .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777766643 22 8899999999998888755444 999999999998886 36789999998
Q ss_pred CCCceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEE-EeCCeeEEEEecCCC-EEEE
Q 008393 360 NPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLG-RYLA 429 (567)
Q Consensus 360 ~~~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~ 429 (567)
+ ...+..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..+. ++.+.+.+. .+++
T Consensus 106 t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 106 T-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYL 182 (373)
T ss_pred C-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEE
Confidence 7 4444444321 1234589999999988866544 58899999 99998877 65443 345556554 4556
Q ss_pred EECCCeEEEEECCCCeEEEEec-----CCCCCe-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec------
Q 008393 430 AAAENVVSILDAETQACRLSLQ-----GHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------ 496 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~-----~h~~~V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~------ 496 (567)
.+.||.+.++|. +++...... ....++ ....+.+++..++..+.+ .|.+.|+..... ..+..+..
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRK 260 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCccc
Confidence 667999999999 876663322 111221 234566665544444445 899999865421 22222221
Q ss_pred ----CCCceEEEEEeCCCCeEEEEEc----------CCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CC
Q 008393 497 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD 560 (567)
Q Consensus 497 ----~~~~i~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~D 560 (567)
.......++++++++.+++... .+.|.++|+.+++.+..........+++|+|||+ +++++. .+
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC
Confidence 1122445789999999888764 3589999999998874334445689999999999 777777 48
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|.+||
T Consensus 341 ~~V~ViD 347 (373)
T 2mad_H 341 EVLHIYD 347 (373)
T ss_pred CeEEEEE
Confidence 9999986
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=4.3e-14 Score=141.32 Aligned_cols=279 Identities=9% Similarity=-0.044 Sum_probs=187.9
Q ss_pred CCCCCccceeccCCccceeeee---eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANS---VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~---l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
..+..+..+|..++.-...+.. -+........+++. +++++++...++.|.+||..+++.+.++. .......+++
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE
Confidence 3455666777665521111100 01122345677774 44555666668999999999999988885 3466899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCC-----CcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeEEE
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----ASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~~~~ 411 (567)
+++++.+++...++.|.+||..+ ......+.... .....|++ ++..++++.. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 98884444444899999999987 55554444222 14556777 4566776654 4899999999999988777
Q ss_pred eC--CeeEEEEecCCCEEEEEECC----------CeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCCeEE
Q 008393 412 KG--GTAQMRFQPHLGRYLAAAAE----------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSEDSVR 478 (567)
Q Consensus 412 ~~--~~~~~~~~~~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d~I~ 478 (567)
.. ....+.+++++..++++..+ +.|.++|..+++....+... ......++|+|++++|+++.. .|.
T Consensus 169 ~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~ 247 (328)
T 3dsm_A 169 TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIW 247 (328)
T ss_dssp ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEE
T ss_pred EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEE
Confidence 64 34678889987655444444 78999999999887776532 246889999999998888766 899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-----cCCeEEEEECCCCcEEEeccccCCeeEEEE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTMTLTAHEGLIAALAV 547 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-----~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~ 547 (567)
+||..+++... ...+.........++++|++..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 248 ~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 248 RMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 99998764311 111122245688899999666666665 56799999998 665532222334455555
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.4e-13 Score=147.13 Aligned_cols=264 Identities=12% Similarity=0.055 Sum_probs=191.2
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC--CCCceeEEeccCCC
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPGYSLRTFMGHSA 373 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~h~~ 373 (567)
++.+.++++...++.|.+||..+++.+.++... ..+..+.|+||+++|++++.|+.|.+||+. + ...+..+.. ..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~-G~ 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKI-GS 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEEC-CS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEec-CC
Confidence 344556677778999999999999999888743 357799999999999999999999999995 4 455566554 34
Q ss_pred cEEEEEEc----CCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------------CeeEEEEecCCCEEEEEEC-CC
Q 008393 374 SVMSLDFH----PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA-EN 434 (567)
Q Consensus 374 ~V~~l~~~----p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~-dg 434 (567)
....++|+ |+|++++++...++.|.++|..+.+.+..+.. .+..+..++++..+++... .|
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 46899999 69999998888889999999999998877652 2345667777776666555 68
Q ss_pred eEEEEECCCCeEE--EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeec-----CCCceEEEE
Q 008393 435 VVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-----NGNKFHSCV 505 (567)
Q Consensus 435 ~I~i~d~~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~-----~~~~i~~~~ 505 (567)
.|.++|....+.. ..+ ........+.|+|+|++|+++... .|.++|+.++ +.+..+.. |...-.. .
T Consensus 321 ~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~ 395 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-F 395 (567)
T ss_dssp EEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-E
T ss_pred eEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-e
Confidence 9999998875322 222 234567789999999998887754 8999999877 44444433 2111112 2
Q ss_pred EeCCCCeEEEEE--cCCeEEEEECCC-------CcEE-EeccccCCeeEEEEecCCCEEEEEEC-------CCcEEEcC
Q 008393 506 FHPTYPSLLVIG--CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iWd 567 (567)
++|++..+++.+ .++.|.++|..+ .+.+ .+......-..+.++|++++|.+... ...|.++|
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 688866666554 457999999987 3444 34433333345778999999887662 34777764
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=3.1e-14 Score=139.96 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=173.4
Q ss_pred eeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 281 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
..+..+.....+++|+++|+ +++++..++.|.+|+..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445566778999999998 7788888999999999887 56666777889999999999988777777899999997
Q ss_pred CCCceeEEeccC----CCcEEEEEEcCCCCeEEEEE----e-------------CCCcEEEEECCCCeeeEEEe--CCee
Q 008393 360 NPGYSLRTFMGH----SASVMSLDFHPNKDDLICSC----D-------------GDGEIRYWSINNGSCTRVFK--GGTA 416 (567)
Q Consensus 360 ~~~~~~~~~~~h----~~~V~~l~~~p~~~~li~s~----~-------------~dg~I~iwd~~~~~~~~~~~--~~~~ 416 (567)
+ +......... ...+..++++++|. ++++. . ..+.|..++.. ++...... ....
T Consensus 99 ~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 G-GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp T-CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred C-CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 6 3332222211 23467899999986 55452 2 13466666665 44333332 2457
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECC-CCeE---EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAE-TQAC---RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
.++|+|++..+++...++.|.+||+. +++. ...+..+...+.+++++++|+++++. .+.|.+||.. + +.+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 79999999988555567899999987 4544 33333355667889999999977766 4499999985 3 5666
Q ss_pred EeecCCCceEEEEE-eCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 493 ELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 493 ~~~~~~~~i~~~~~-sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.+..+.. +.+++| .++++.|++++.+ .|.-++..+.+..
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6766666 889999 5888888888875 5777777666543
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.2e-15 Score=156.15 Aligned_cols=237 Identities=8% Similarity=0.050 Sum_probs=161.0
Q ss_pred EEEeCCCCeeeeeecccCcc-----EEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEE-EEEEcC
Q 008393 312 VLWHTDTLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVM-SLDFHP 382 (567)
Q Consensus 312 ~vwd~~~~~~~~~l~~h~~~-----V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~~p 382 (567)
..+|..+++.+..+..+... +.+++|+|+|++|+.+... ..|.+||+.+ +.. ..+..+...+. .+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~-~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQA-VQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TEE-EECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCC-CcE-EEeecCCCCccccceECC
Confidence 34567788777777655443 6788999999998877653 3688889876 443 33333333333 378999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee---E-------------------EEEecCCCEEEEE-----ECCCe
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-------------------MRFQPHLGRYLAA-----AAENV 435 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~l~~~-----~~dg~ 435 (567)
+++.++ .++.++.|++||+.+++....+..+.. . +.++|++..+++. ..+..
T Consensus 91 dg~~l~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFF-YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEE-EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEE-EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 988766 556677999999999887665542211 1 1345555554443 34568
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-------eEEEEeCCCCCCCceEEEeecC--CCceEEEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-------SVRVWTVGSGSEGECVHELSCN--GNKFHSCV 505 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-------~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~ 505 (567)
|++||+.+++..... .+...+..+.|+| ++..|+..+.+ .|.+||+..+. ...+..+ ...+..++
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceE
Confidence 999999998766544 4567789999999 88877776653 37788876542 1222222 23577889
Q ss_pred EeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCCeeEEEEec-CCCEEEEEE
Q 008393 506 FHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASAS 558 (567)
Q Consensus 506 ~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s 558 (567)
|+|+|++|++++.+ +.|++||+.+++...+..... .. +.|+| ||++|++++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence 99999988877654 349999999887664433222 33 89999 999888765
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.68 E-value=1.7e-14 Score=145.08 Aligned_cols=271 Identities=8% Similarity=0.058 Sum_probs=190.8
Q ss_pred EEEcCCCCeEEEEeC-----CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEE
Q 008393 293 CHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWD 357 (567)
Q Consensus 293 l~~s~dg~~lasg~~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd 357 (567)
....|+++.+++... ++.|.++|..+++.+.++..-..+ . ++++||+++|+++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455788988887765 679999999999999999865555 4 99999999988876 367899999
Q ss_pred cCCCCceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEE
Q 008393 358 ADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 358 ~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (567)
..+ ...+..+.-. ......+.|+|+|++++++... ++.|.++|+.+++.+..+..+.....+......+++
T Consensus 116 ~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 194 (386)
T ss_dssp TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence 998 5555555321 1245579999999988866543 789999999999999988754433334444467778
Q ss_pred EECCCeEEEEECCC-CeEEEEecCC----CCCee-EEEEc-CCCCEEEEEeCCeEEEEeCCCCCCCceEEEee---c---
Q 008393 430 AAAENVVSILDAET-QACRLSLQGH----TKPID-SVCWD-PSGELLASVSEDSVRVWTVGSGSEGECVHELS---C--- 496 (567)
Q Consensus 430 ~~~dg~I~i~d~~~-~~~~~~~~~h----~~~V~-~l~~s-p~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~---~--- 496 (567)
.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++....+.|+++|+.+... ..+..+. .
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAER 273 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccccc
Confidence 88899999999976 5543322211 12222 24664 678666544434999999975421 2222221 0
Q ss_pred ----CCCceEEEEEeCCCCeEEEEEc----------CCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CC
Q 008393 497 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD 560 (567)
Q Consensus 497 ----~~~~i~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~D 560 (567)
....+..++++++++.+++... .+.|.++|+.+++.+....-...+..|++++|++ +|+++. .+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence 0122334678999999998753 2479999999999885444445789999999997 666654 48
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|.++|
T Consensus 354 ~~VsViD 360 (386)
T 3sjl_D 354 KTLYIHD 360 (386)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 8898875
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=3.2e-15 Score=165.31 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=167.1
Q ss_pred cCCCCeEEEEEcCCCCeEEE-----EeCCCcEEEEeCCCCeeeeeecccCccE--EEEEECCCCCeEEEEeCCCc-----
Q 008393 285 ASTSKVICCHFSSDGKLLAT-----GGHDKKAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSFDKT----- 352 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~las-----g~~dg~I~vwd~~~~~~~~~l~~h~~~V--~~i~fsp~~~~l~s~s~dg~----- 352 (567)
+|+..+.+++|||||++||. |+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 56667889999999999984 4445789999999988651 1122222 67899999999999998876
Q ss_pred --------EEEEEcCCCCc---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeEEEeC--Cee
Q 008393 353 --------VRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKG--GTA 416 (567)
Q Consensus 353 --------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g--~I~iwd~~~~~~~~~~~~--~~~ 416 (567)
|++|++.++.. .+.....|...+..+.|+|+|+.++++...+ + .|++|+..++........ ...
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987432 2223334556889999999998887665543 2 677777665554433332 233
Q ss_pred EEEEecCCCEEEEEEC----CCeEEEEECCCCeE---EEEecCC-CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC
Q 008393 417 QMRFQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 487 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~---~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~ 487 (567)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...+ ..+||.+...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-- 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-- 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence 3444 5666 666554 57999999987652 3333333 4457888998 67788888877 6666655421
Q ss_pred CceEEEeecC-CCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcEEEec
Q 008393 488 GECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTLT 536 (567)
Q Consensus 488 ~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~~ 536 (567)
...+..+..+ ...+..+.+++++..|+..... +.|++||+.+++...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1344555544 4567777889999877755433 58999999988755443
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.66 E-value=1.1e-12 Score=128.26 Aligned_cols=271 Identities=10% Similarity=0.010 Sum_probs=189.1
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee-eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
.....+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. ...
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678899999999988877778999999988 55443 233344679999999999877777668889999987 333
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-Ee---CCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
...........+.++++.+++. ++++...++.|..||.. ++.... +. .....+++.+++..+++...++.|..|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 2222333446789999998875 55466667899999988 554432 22 245778888987755444457899999
Q ss_pred ECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 440 DAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 440 d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
|. +++... .+..+...+..++++++|+++++...+ .|.+||. ++. .....+......+.+++++++|..+++..
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 98 554433 233345678999999999877766655 8999998 331 11122233456688999999998544444
Q ss_pred cCCeEEEEECCCCcEEE--eccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 518 CYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 518 ~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.++.|..||. ++.... +......+.+++++++|+++++.. . .|..+
T Consensus 249 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 249 GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 5689999998 455443 333456789999999998766554 4 45443
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=3.3e-14 Score=137.40 Aligned_cols=236 Identities=10% Similarity=-0.007 Sum_probs=166.2
Q ss_pred CeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 289 KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 289 ~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||.... . ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~-~-~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN-N-QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS-C-CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc-e-Eee
Confidence 567899999999777 546789999999876554333333445688999999998665555 889999998763 2 233
Q ss_pred ec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC
Q 008393 368 FM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 368 ~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
+. .....+..+++.+++. ++++...++.|.+|+..+........ .....+++.+++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 32 2336789999999876 66576778899999876554432221 2456789999887555555578999999988
Q ss_pred CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 444 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 444 ~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.........+...+.+|+++++|.++++...+ .|.+|+..... ...........+..++++++|+.+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 76654434444678899999999777776666 89999986532 111112223568899999999877777788999
Q ss_pred EEEECCCCc
Q 008393 523 ELWNMSENK 531 (567)
Q Consensus 523 ~iwd~~~~~ 531 (567)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.65 E-value=1.1e-13 Score=134.56 Aligned_cols=239 Identities=15% Similarity=0.085 Sum_probs=177.8
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCc
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SAS 374 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~ 374 (567)
..+++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. + ++.+..+..+ ...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcCCCCcc
Confidence 346789999999999999999999999998776 5789999999999888 45778999999 5 5666666654 357
Q ss_pred EEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEECCCeEEEEECCCC
Q 008393 375 VMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 444 (567)
Q Consensus 375 V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 444 (567)
+.++.+.++|+.++ +.+. ++.|..+|. +++.+..+.. ....+.+.++++.+++...++.|.+||.+ +
T Consensus 79 ~~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 79 MQTARILPDGNALV-AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEECTTSCEEE-EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccccEECCCCCEEE-EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 88999999988666 4444 777888886 6777766542 12345678898988888889999999998 9
Q ss_pred eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC------CceEEEEEeCCCCeEEEEE
Q 008393 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG------NKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~------~~i~~~~~sp~~~~l~~~~ 517 (567)
+.+.++... ..+.++.+.++|++++++..+ .|..+|..++ +.+.++.... ..+..+...++|..+++..
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999988864 456678889999999988888 8999999877 5666665332 2367888899998776663
Q ss_pred cC--------CeEEEEEC-CCCcEE-Eeccc--cCCeeEEE
Q 008393 518 CY--------QSLELWNM-SENKTM-TLTAH--EGLIAALA 546 (567)
Q Consensus 518 ~d--------g~I~iwd~-~~~~~~-~~~~h--~~~V~~l~ 546 (567)
.. +..+++++ .+++.+ .+..+ -+.|++++
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 11 23355555 355554 44322 24455554
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=5.7e-14 Score=155.67 Aligned_cols=266 Identities=8% Similarity=0.003 Sum_probs=180.4
Q ss_pred CCCCeEEEEeCC-----CcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEeCCC-----cEEEEEcCC
Q 008393 297 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADN 360 (567)
Q Consensus 297 ~dg~~lasg~~d-----g~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s~dg-----~I~iwd~~~ 360 (567)
|||++++....+ +.|++.+...++....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 888887765432 244555554444332222 3445688999999999998776543 899999998
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc----------------EEEEECCCCee--eEEEeC-----CeeE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----------------IRYWSINNGSC--TRVFKG-----GTAQ 417 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~----------------I~iwd~~~~~~--~~~~~~-----~~~~ 417 (567)
+..+.....+ ..+..++|+|||+.++++. .++. |++|++.++.. ...+.. ....
T Consensus 161 -g~~~~~~~~~-~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 -AKELPDVLER-VKFSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp -TEEEEEEEEE-ECSCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred -CCCCcccccC-cccceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 4444322212 2266799999998877554 4444 99999988763 233332 2457
Q ss_pred EEEecCCCEEEEEEC-----CCeEEEEECCC------Ce-EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEE
Q 008393 418 MRFQPHLGRYLAAAA-----ENVVSILDAET------QA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW 480 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~-----dg~I~i~d~~~------~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iw 480 (567)
+.|+|++..++..+. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.. .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 889999999888775 56899999986 42 34556666666654 488999888777643 59999
Q ss_pred eCCCCCCCceEEEeecCCC--ceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcE-EEeccccCCeeEEEEecCCCEEE
Q 008393 481 TVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
|+.++... ....+..+.. .+..+.|++++.++++...++ .|++||+.+++. ..+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99765321 2233444433 677889987777777777787 577888866764 46666777889999999987665
Q ss_pred EE-E---CCCcEEEcC
Q 008393 556 SA-S---HDKFVKLWK 567 (567)
Q Consensus 556 s~-s---~Dg~I~iWd 567 (567)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 236777764
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=2.1e-12 Score=131.19 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=177.5
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeeccc-------
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------- 328 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h------- 328 (567)
+.++|..++ +.+..+.....+ .++|+|||++|+++. .++.|.+||..+++.+.++...
T Consensus 49 v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 49 QWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 344454443 334455543444 899999999999886 3678999999998888776532
Q ss_pred CccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 329 SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
...-..+.|+|||++|+++.. ++.|.++| .+ ++.+.. +.. .. ++.+.+++...+++.+.||.+.+||. ++
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 123458999999999999874 47899999 77 555555 432 22 35566777777778888999999999 87
Q ss_pred eeeEEEe-----CCe----eEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecC----------CCCCeeEEEEcC
Q 008393 406 SCTRVFK-----GGT----AQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG----------HTKPIDSVCWDP 464 (567)
Q Consensus 406 ~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~----------h~~~V~~l~~sp 464 (567)
+...... ... ....+.++++.++..+.++.+.++|+.... .+..+.. .......+++++
T Consensus 197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence 7663322 111 123466677777777788899999997652 2222221 112244578999
Q ss_pred CCCEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEE-cCCeEEEEECCCCc
Q 008393 465 SGELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENK 531 (567)
Q Consensus 465 ~g~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~~ 531 (567)
+++.|+.... + .|.++|+.++ +.+..+.. ......++|+|||+ +++++. .++.|.+||+.+++
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9988777643 2 7999999776 56666643 34678999999999 677776 48899999999998
Q ss_pred EEEe
Q 008393 532 TMTL 535 (567)
Q Consensus 532 ~~~~ 535 (567)
.+..
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 8744
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=7.3e-14 Score=134.95 Aligned_cols=231 Identities=10% Similarity=-0.024 Sum_probs=161.6
Q ss_pred cEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 331 LITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
...++++++++++++ +...++.|.+||..+. ........+...+.+|++.+++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998666 4467889999998652 22111123345678999999876 554555 8899999987765432
Q ss_pred EE-e--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 410 VF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 410 ~~-~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
.. . .....+++.+++..+++...++.|.+|+..+.............+.+|+++++|+++++...+ .|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1 346788899987755555567899999877655443333333467889999999977776655 9999998754
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-cccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
. ...........+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223366889999999965555556789999999776554333 3346789999999999888888899999
Q ss_pred EcC
Q 008393 565 LWK 567 (567)
Q Consensus 565 iWd 567 (567)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 885
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.62 E-value=2.7e-13 Score=136.37 Aligned_cols=271 Identities=12% Similarity=0.127 Sum_probs=184.8
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeecccC------
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHS------ 329 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h~------ 329 (567)
+.+.|..++ +.+..+..-..+ .++++|||++|+++. .++.|.+||..+++.+.++....
T Consensus 61 V~ViD~~t~---~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 61 QFVIDGEAG---RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp EEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred EEEEECCCC---eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 334444443 455555544455 399999999988775 36789999999999988875321
Q ss_pred -ccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-C
Q 008393 330 -SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-G 405 (567)
Q Consensus 330 -~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~ 405 (567)
..-..++|+|||++|+++.. ++.|.++|+.+ .+.+.++.-. + |..+.|.+...+++.+.||.+.+.++.+ +
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 24557899999999998874 68899999998 6666666422 1 1223355555555777899999999986 5
Q ss_pred eeeEEEeCC-------e-eEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEec---------C-CCCCeeEEEEcCC
Q 008393 406 SCTRVFKGG-------T-AQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQ---------G-HTKPIDSVCWDPS 465 (567)
Q Consensus 406 ~~~~~~~~~-------~-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~---------~-h~~~V~~l~~sp~ 465 (567)
+........ . ....|....+.++..+.++.|+++|..+.. .+..+. + ....+..++++++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 543221111 1 113455445667677889999999997653 332221 0 1223445788999
Q ss_pred CCEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEEc-CCeEEEEECCCCcE
Q 008393 466 GELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGC-YQSLELWNMSENKT 532 (567)
Q Consensus 466 g~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~-dg~I~iwd~~~~~~ 532 (567)
++.++.... . .|.++|+.++ +.+..+... ..++.|+|++|++ +|+++.. ++.|.++|..+++.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 988887642 3 7999999887 555555432 3678899999997 6777654 78999999999998
Q ss_pred EEeccccCCeeEEEEecC
Q 008393 533 MTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spd 550 (567)
+......+..+.|.+++|
T Consensus 367 ~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 367 LRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEECCCCSSCCEEEECC
T ss_pred EEEecCCCCCceeEECCc
Confidence 855555555667777776
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=6.2e-14 Score=154.97 Aligned_cols=264 Identities=10% Similarity=-0.032 Sum_probs=170.3
Q ss_pred cCCCCeEEEEeCCC-----cEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEE-----eCCCcEEEEEcC
Q 008393 296 SSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATS-----SFDKTVRVWDAD 359 (567)
Q Consensus 296 s~dg~~lasg~~dg-----~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~-----s~dg~I~iwd~~ 359 (567)
+++|++++....++ .|++.+...++....+. +|...+..++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887766543 34555554554333332 455679999999999999844 345689999999
Q ss_pred CCCceeEEeccCCCcE--EEEEEcCCCCeEEEEEeCCCc-------------EEEEECCCCee--eEEEeC-----CeeE
Q 008393 360 NPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGE-------------IRYWSINNGSC--TRVFKG-----GTAQ 417 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V--~~l~~~p~~~~li~s~~~dg~-------------I~iwd~~~~~~--~~~~~~-----~~~~ 417 (567)
++ ..+. ..+...+ ..++|+|||+.++++ +.|.. |++|++.++.. ...+.. ....
T Consensus 156 tg-~~~~--~~~~~~~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 156 SG-EWSK--VDVIEGGKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TC-CBCS--SCCBSCCTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CC-CCcC--CcccCcccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 84 3320 1111222 679999999877754 45554 99999998762 233332 3567
Q ss_pred EEEecCCCEEEEEECCC----eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC----C-eEEEEeCCCCCCC
Q 008393 418 MRFQPHLGRYLAAAAEN----VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGSEG 488 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg----~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~----d-~I~iwd~~~~~~~ 488 (567)
+.|+|++..+++.+.++ .|+++|..+++.. .+..+...+....| ++|. |+..+. + .|.+||+.++...
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc
Confidence 88999999998887765 7888877665443 34445556666666 5666 444443 4 7999999776321
Q ss_pred ceEEEeecC-CCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEEeccc-cCCeeEEEEecCCCEEEEEE----CC
Q 008393 489 ECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLTAH-EGLIAALAVSTETGYVASAS----HD 560 (567)
Q Consensus 489 ~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s----~D 560 (567)
.....+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ .+.|..++++|++..|+... ..
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTP 387 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEE
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 122223323 4457778888 66677777888866666 4433333345444 66788889999998766332 24
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|++||
T Consensus 388 ~~v~~~d 394 (695)
T 2bkl_A 388 RQIYKTS 394 (695)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 6787775
No 199
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=8.5e-13 Score=128.77 Aligned_cols=193 Identities=10% Similarity=0.098 Sum_probs=143.9
Q ss_pred cCCCCeEEEEE-cCCCCeEEEEeC-CCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHF-SSDGKLLATGGH-DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~-s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+|...+.++++ .++++++++... ++.|.+|| .+++.+..+. .+...+.+++++++++++++...++.|.+||.+.
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG- 151 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-
Confidence 34567889999 577777766643 89999999 5677766664 3456789999999998888877889999999753
Q ss_pred CceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCCEEEEEECCC
Q 008393 362 GYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 362 ~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg 434 (567)
..+..+. .+...+..|++++++. ++++...++.|++||.. ++.+..+.. ....+++++++..+++...++
T Consensus 152 -~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 152 -NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp -CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred -CEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 4444443 4556789999999875 66677778999999974 455555532 457789999987666666665
Q ss_pred -eEEEEECCCCeEEEEecCCC--CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 435 -VVSILDAETQACRLSLQGHT--KPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 435 -~I~i~d~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
.|.+||.. ++.+..+..+. ..+.+++++++|+++++ +.+ .|++|++..
T Consensus 229 ~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 229 FNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 99999964 55555655443 34779999999987777 556 999999854
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=2.4e-13 Score=139.13 Aligned_cols=266 Identities=7% Similarity=0.043 Sum_probs=186.3
Q ss_pred CCCCeEEEEeCC-----CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcCCC
Q 008393 297 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNP 361 (567)
Q Consensus 297 ~dg~~lasg~~d-----g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~~~ 361 (567)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 466666555442 69999999999999999865555 899999999988886 367899999998
Q ss_pred CceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeCCeeEEEEecCC-CEEEEEEC
Q 008393 362 GYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAAA 432 (567)
Q Consensus 362 ~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 432 (567)
.+.+..+.-. ......+.|+|+|++++++... ++.|.+.|+.+++.+..+.-+.. ....|.+ ..+++.+.
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence 5555554311 1234578999999988866543 68999999999999988875433 3334433 55677778
Q ss_pred CCeEEEEECCCCeEEEEe----cCCCCCe-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC---------
Q 008393 433 ENVVSILDAETQACRLSL----QGHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--------- 497 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~----~~h~~~V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--------- 497 (567)
||.+.+.+..+++..... .....++ ..+.|.+++..++..... .|.+.|+..... ..+..+...
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDW 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccccc
Confidence 898888888666554321 1112222 235678988877777767 899999865321 111111100
Q ss_pred -CCceEEEEEeCCCCeEEEEEc----------CCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEE
Q 008393 498 -GNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVK 564 (567)
Q Consensus 498 -~~~i~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~ 564 (567)
......++++++++++++... .+.|.++|+.+.+.+....-......++|+||++ +++++. .++.|.
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 011123589999998888753 3479999999999884333334688999999999 888888 489999
Q ss_pred EcC
Q 008393 565 LWK 567 (567)
Q Consensus 565 iWd 567 (567)
++|
T Consensus 397 VID 399 (426)
T 3c75_H 397 IYD 399 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=3.2e-12 Score=126.18 Aligned_cols=236 Identities=12% Similarity=0.114 Sum_probs=165.1
Q ss_pred CCCCeEEEEEcCCCCeEEE-------EeCCCcEEEEeCCCCeeeeeec----ccCccEEEEEECCC-CCeEEEEeCCCcE
Q 008393 286 STSKVICCHFSSDGKLLAT-------GGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPS-MPRLATSSFDKTV 353 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~las-------g~~dg~I~vwd~~~~~~~~~l~----~h~~~V~~i~fsp~-~~~l~s~s~dg~I 353 (567)
.-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ +++++ ++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCE
Confidence 3445679999999988888 6778999999988877643322 25567999999999 65444 4444469
Q ss_pred EEEEcCCCCceeEEe-cc-----CCCcEEEEEEcCCCCeEEEEEeCC---------------CcEEEEECCCCeeeEEEe
Q 008393 354 RVWDADNPGYSLRTF-MG-----HSASVMSLDFHPNKDDLICSCDGD---------------GEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~-~~-----h~~~V~~l~~~p~~~~li~s~~~d---------------g~I~iwd~~~~~~~~~~~ 412 (567)
.+||.+ .. . ..+ .. ....+.++++.+++. ++++...+ +.|..||.. ++......
T Consensus 95 ~~~d~~-g~-~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 95 LVVQTD-GT-F-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEETT-SC-E-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEeCC-CC-E-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 999987 33 2 222 11 124588999999986 44455444 568888776 55443322
Q ss_pred --CCeeEEEEe----cCCCEEEEEE-CCCeEEEEECC-CCe-----EEEEecCCC-CCeeEEEEcCCCCEEEEEeCC-eE
Q 008393 413 --GGTAQMRFQ----PHLGRYLAAA-AENVVSILDAE-TQA-----CRLSLQGHT-KPIDSVCWDPSGELLASVSED-SV 477 (567)
Q Consensus 413 --~~~~~~~~~----~~~~~l~~~~-~dg~I~i~d~~-~~~-----~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~d-~I 477 (567)
.....++++ +++..++++. .++.|.+||.. +++ ....+..+. ..+..++++++|+++++...+ .|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 345678899 8887776665 47899999976 443 233344443 567899999999988887766 99
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 530 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 530 (567)
.+||..++. .+..+..+...+.+++|+++++.|++++. ++.|..|++...
T Consensus 250 ~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 250 EVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999987553 33444555577899999999996766654 579999998753
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=2.5e-13 Score=151.24 Aligned_cols=244 Identities=12% Similarity=0.064 Sum_probs=164.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCC-----CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc--------
Q 008393 286 STSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------- 352 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~d-----g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~-------- 352 (567)
|+..+..++|||||++||.+..+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44568899999999999887654 4699999999987653 112222357899999 99988887654
Q ss_pred ------EEEEEcCCCCc-eeEEec--cCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCCC--eeeEEEeCC--e
Q 008393 353 ------VRVWDADNPGY-SLRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNG--SCTRVFKGG--T 415 (567)
Q Consensus 353 ------I~iwd~~~~~~-~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~~--~~~~~~~~~--~ 415 (567)
|++|++.+... ....+. .+...+..+.|+|+|+.++++... ...|++||+.++ ++...+... .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999976432 122232 333468899999999988766643 348999999887 413333321 1
Q ss_pred eEEEEecCCCEEEEEECC----CeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC-CCCC
Q 008393 416 AQMRFQPHLGRYLAAAAE----NVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG-SGSE 487 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~-~~~~ 487 (567)
....+.++++.++..+.+ +.|.+||+.++ .....+..+...+..++|+ ++.++++...+ ..+||.+. .+
T Consensus 319 ~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-- 395 (741)
T 1yr2_A 319 QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-- 395 (741)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS--
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC--
Confidence 122245889998888763 46999999884 3444444455556678887 56677777777 65555443 22
Q ss_pred CceEEEeec-CCCceEEEEEeCCCCeEEEEEc----CCeEEEEECCCCcEEEe
Q 008393 488 GECVHELSC-NGNKFHSCVFHPTYPSLLVIGC----YQSLELWNMSENKTMTL 535 (567)
Q Consensus 488 ~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~----dg~I~iwd~~~~~~~~~ 535 (567)
.....+.. ....+..+.++|+++.|+.... .++|++||+.+++...+
T Consensus 396 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 -KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp -CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred -CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34455554 3566888899999886665433 25899999988775433
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=1.5e-11 Score=120.07 Aligned_cols=233 Identities=8% Similarity=0.009 Sum_probs=164.2
Q ss_pred cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 326 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
..+...+.++++.++++++++...++.|.+||.. ..........+...+.++++.+++. ++++...++.|..||.. +
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-C
Confidence 3455679999999999877776668899999987 3332222233557899999999876 55466667889999987 3
Q ss_pred eeeEEEe-----CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEE
Q 008393 406 SCTRVFK-----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVR 478 (567)
Q Consensus 406 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~ 478 (567)
+. ..+. .....+++.+++..+++...++.|.+||. +++... .+..+...+..++++++|+++++...+ .|.
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 32 2222 24567888888766655556789999999 554432 333345678999999999888777665 899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCCCEEEE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s 556 (567)
+||. ++.. .. ..+......+..+++++++..+++...++.|.+||. +++...+ ..+...+.+++++++|+++++
T Consensus 166 ~~~~-~g~~-~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDI-TE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCE-EE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcE-EE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 9998 4421 11 122334456889999999985555555789999999 6665433 345567999999999987776
Q ss_pred EECCCcEEEcC
Q 008393 557 ASHDKFVKLWK 567 (567)
Q Consensus 557 ~s~Dg~I~iWd 567 (567)
...++.|.+||
T Consensus 242 ~~~~~~i~~~d 252 (299)
T 2z2n_A 242 EWGANKIGRLT 252 (299)
T ss_dssp ETTTTEEEEEE
T ss_pred ccCCceEEEEC
Confidence 65677787764
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=1.8e-12 Score=126.00 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=161.1
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----C
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 414 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~ 414 (567)
.+++|++++.|+.|.+||.++ ++.+..+..+. ..+.++.+.|+|+ +++ +.++.|..||. +++.+..++. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 356899999999999999987 67777777665 4788999999986 444 34788999999 8998888875 3
Q ss_pred eeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
...+.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|++|++...+ .|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 456778999999998887 788888886 6776666542 11245567889999999999888 99999986 5
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc------CCeeEEEEecCCCEEEEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVSTETGYVASAS 558 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~------~~V~~l~~spdg~~l~s~s 558 (567)
+.+..+... .....+.+.++++.++++..++.|..+|..+++.+ .+..+. ..+..++..++|.++++..
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 566666654 34556788899998888888889999999988877 443221 2378888899999888773
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=1e-11 Score=127.90 Aligned_cols=230 Identities=11% Similarity=0.098 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCcee
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSL 365 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~ 365 (567)
....+++|+++|+++++...++.|++||.+++.....+..... .. ++|++++..|+++..++ .|.+|+..... ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~-~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW-AP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT-CE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc-ee
Confidence 4678999999999888877789999999998877666554333 33 99999999999998866 78888887633 23
Q ss_pred EEe----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----EeC--Ce--e-EEEEecCCCEEEEEEC
Q 008393 366 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKG--GT--A-QMRFQPHLGRYLAAAA 432 (567)
Q Consensus 366 ~~~----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~~~--~~--~-~~~~~~~~~~l~~~~~ 432 (567)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ..+ .. . .++|+|+++.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224567889999996566665 66788999999988764333 111 11 2 8999997777776665
Q ss_pred -CCeEEEEECCCCeEEEEecCCC---------------CCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEe
Q 008393 433 -ENVVSILDAETQACRLSLQGHT---------------KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 433 -dg~I~i~d~~~~~~~~~~~~h~---------------~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
++.|+.|+.... +..+.++. .....|+|+++|+++++-. .+ .|+.|++.++ .+..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G----~v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG----YVSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT----EEEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC----EEEEE
Confidence 689999998754 22333322 3478999999999777766 66 9999997655 23333
Q ss_pred ecC---------------CCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 495 SCN---------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 495 ~~~---------------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.++ -.....+++++++.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333 245788999999766666666678887765
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=1.2e-12 Score=145.66 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=167.6
Q ss_pred cCCCCeEEEEeCCCc---EEEE--eCC---CCeeeeee------cccCccEEEEEECCCCCeEEEEeCC-----CcEEEE
Q 008393 296 SSDGKLLATGGHDKK---AVLW--HTD---TLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFD-----KTVRVW 356 (567)
Q Consensus 296 s~dg~~lasg~~dg~---I~vw--d~~---~~~~~~~l------~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iw 356 (567)
+|||++++....++. -.+| +.. .++....+ .+|...+..+.|+|||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388998877654432 4444 443 33333221 2344468899999999999887654 359999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-------------cEEEEECCCCee--eEEEeC-----Cee
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------------EIRYWSINNGSC--TRVFKG-----GTA 416 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-------------~I~iwd~~~~~~--~~~~~~-----~~~ 416 (567)
|+.+ +..+.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+.. ...
T Consensus 195 dl~t-g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVAD-GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTT-CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCC-CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998 443332 112222357899999 87776553322 399999987752 233332 256
Q ss_pred EEEEecCCCEEEEEECC-----CeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEeCCC
Q 008393 417 QMRFQPHLGRYLAAAAE-----NVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGS 484 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iwd~~~ 484 (567)
.+.|+|++..++..+.+ ..|++||+.++ ++...+..+...+.... +++|+.|+..+.+ .|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 78899999998887754 38999999877 31345555555555553 4889888887753 499999876
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEEecc-ccCCeeEEEEecCCCEEEEE-E--
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLTA-HEGLIAALAVSTETGYVASA-S-- 558 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~-s-- 558 (567)
+. ......+..+...+..+.+. ++..+++...++..+|| ++..+....+.. +.+.|..++++|+++.|+.. +
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12233334444456677777 55566777778765555 554443334443 36678899999998765532 2
Q ss_pred -CCCcEEEcC
Q 008393 559 -HDKFVKLWK 567 (567)
Q Consensus 559 -~Dg~I~iWd 567 (567)
..+.|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 246777774
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.51 E-value=8.6e-13 Score=132.70 Aligned_cols=265 Identities=9% Similarity=-0.015 Sum_probs=171.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEe--CCCcEEEEeCCCCeeee------eecccCccEEEEEECCCCCeEEEEeC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT------NLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~--~dg~I~vwd~~~~~~~~------~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
+.+..+. ..+..++++++|+++++.. .++.++||.+.+++... ....|...+..|+|+++++++++-..
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g 86 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNG 86 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence 4444443 6788999999999988864 23435555554555431 11235568999999999876555433
Q ss_pred -----CCcEEEEEcCCCCceeEEecc------CCCcEEEEEEcCCCCeEEEEEe---CCCcEEEEECCCCeeeEEEeCC-
Q 008393 350 -----DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGG- 414 (567)
Q Consensus 350 -----dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~li~s~~---~dg~I~iwd~~~~~~~~~~~~~- 414 (567)
++.|.+||+.+ +..+..+.. +...+..+++.+++..++++.. .++.|.+||+.+++..+.+.++
T Consensus 87 ~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 57899999987 554554432 2245689999987667776766 6889999999988877665431
Q ss_pred -ee--EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCC---CC
Q 008393 415 -TA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS---GS 486 (567)
Q Consensus 415 -~~--~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~---~~ 486 (567)
.. ...+.+++..+.....++.+..|. ..+..|+|+|+|+.|+.+... .|..++... +.
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~ 231 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ 231 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred cccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence 10 133344444444445555554332 246789999999988888766 455554321 10
Q ss_pred --CCc---eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc--ccCCeeEEEEecCCCEEEEEEC
Q 008393 487 --EGE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 487 --~~~---~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~ 559 (567)
... .+. ..++......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+.
T Consensus 232 ~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 232 LTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp CCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 000 011 11223345567999999877777778899999995565443332 3456899999999988887764
Q ss_pred CC
Q 008393 560 DK 561 (567)
Q Consensus 560 Dg 561 (567)
.+
T Consensus 311 ~~ 312 (343)
T 2qe8_A 311 LH 312 (343)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=5.5e-12 Score=124.48 Aligned_cols=233 Identities=7% Similarity=-0.008 Sum_probs=158.2
Q ss_pred CccEEEEEECCCCCeEEE-------EeCCCcEEEEEcCCCCceeEEec-----cCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 329 SSLITDVRFSPSMPRLAT-------SSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s-------~s~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
-....+++|++++.++++ +..++.|.+||..+.. . ..+. ++...+.++++++++..++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-K-TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-E-EEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-E-EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence 345689999999987777 5678899999987633 2 2222 24567899999998334554443 457
Q ss_pred EEEEECCCCeeeEE-Ee-------CCeeEEEEecCCCEEEEEECC---------------CeEEEEECCCCeEEEEecCC
Q 008393 397 IRYWSINNGSCTRV-FK-------GGTAQMRFQPHLGRYLAAAAE---------------NVVSILDAETQACRLSLQGH 453 (567)
Q Consensus 397 I~iwd~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d---------------g~I~i~d~~~~~~~~~~~~h 453 (567)
|.+||.. ++.... .. .....+++.+++..+++...+ +.|..||.. ++..... .+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 9999998 665433 21 135688999987666555444 578888876 5443322 23
Q ss_pred CCCeeEEEEc----CCCCEEEEEe-CC-eEEEEeCC-CCCC--CceEEEeecCC-CceEEEEEeCCCCeEEEEEcCCeEE
Q 008393 454 TKPIDSVCWD----PSGELLASVS-ED-SVRVWTVG-SGSE--GECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQSLE 523 (567)
Q Consensus 454 ~~~V~~l~~s----p~g~~l~s~s-~d-~I~iwd~~-~~~~--~~~i~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~I~ 523 (567)
......++|+ ++++.|+.+. .+ .|.+||+. .+.. ...+..+..+. .....++++++|..+++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 3456889999 9997665554 45 89999986 2211 01222333333 5678899999998777777888999
Q ss_pred EEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE-ECCCcEEEcC
Q 008393 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iWd 567 (567)
+||..+++.. .+..+...+.+++|++++++|+.+ ..++.|..|+
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 9999866544 455566789999999999955544 4556777663
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=1.3e-11 Score=127.02 Aligned_cols=228 Identities=13% Similarity=0.063 Sum_probs=160.5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCee
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSC 407 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~ 407 (567)
.....|+|+++++++++...++.|++||.++ +........ ..... ++|+++++.++ ++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4578999999998777777789999999986 444333333 33334 99999988666 555544 799999877655
Q ss_pred eEEE----e---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEE----ecCCCCCe--eEEEEcCC-CCEEEEEe
Q 008393 408 TRVF----K---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPI--DSVCWDPS-GELLASVS 473 (567)
Q Consensus 408 ~~~~----~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~----~~~h~~~V--~~l~~sp~-g~~l~s~s 473 (567)
...+ . .....++++|+++.++++..++.|+.||..++..... ..++...- ..++|+|+ +.++++..
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4443 1 3456789999778888877788999999988764433 22222222 39999996 54444444
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecC---------------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEec
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCN---------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLT 536 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~---------------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~ 536 (567)
.+ .|+.|+.... +..+.+. -.....++++++|.++++-. .++.|+.|++.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 45 8999987532 2223222 13478899999999555555 6789999998888776665
Q ss_pred cc---------------cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 537 AH---------------EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 537 ~h---------------~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++ -.....|++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 54 2468899999998877777777888764
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=1.2e-12 Score=132.18 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=138.7
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---------eee-eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------SKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---------~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.+..+++++...+|++|+.+ .+++|+++..+ ... ....+.. |+.|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 68899999999999999987 55569875433 111 2223556 999999 89999999 8899999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
.+.. .......|...|.++.+.+. . ++++..||.|.+||+.++.... +...+.+++|+|+| ++++..||.+++
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8743 44556667888988888755 2 5578899999999999887754 56789999999998 788999999999
Q ss_pred EECCCCeE--EEEe------c---CCCCCeeEEEEcCCCCEEEEEe
Q 008393 439 LDAETQAC--RLSL------Q---GHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 439 ~d~~~~~~--~~~~------~---~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|+...++. ..++ . +|...|.+|+|.+++.++++-.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99988876 5566 3 3778899999999999888754
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=3.9e-12 Score=130.20 Aligned_cols=255 Identities=12% Similarity=0.133 Sum_probs=178.5
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeeccc-------
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------- 328 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h------- 328 (567)
+.++|..+. +.+..+..-..+ .++++|||++|+++. .++.|.++|..+++.+.++.-.
T Consensus 101 VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 101 QFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred EEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 334454444 455555544455 799999999988876 3678999999999998887532
Q ss_pred CccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 008393 329 SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~ 406 (567)
......+.|+||+++|+++.. ++.|.+.|+.+ .+.+..+.-. + +....|++...+++.+.||.+.+.++.+++
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 223457899999999999875 57899999998 5666665531 1 133455555666677789999988886665
Q ss_pred eeEEE----eCC----eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE--EecC----------CCCCeeEEEEcCCC
Q 008393 407 CTRVF----KGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQG----------HTKPIDSVCWDPSG 466 (567)
Q Consensus 407 ~~~~~----~~~----~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~----------h~~~V~~l~~sp~g 466 (567)
..... ... ...+.+.+++..++.....+.|.+.|........ .+.. .......+++++++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 54321 111 1234678888998888889999999997654321 1110 01122237899998
Q ss_pred CEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEE-cCCeEEEEECCCCcEE
Q 008393 467 ELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTM 533 (567)
Q Consensus 467 ~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~~~~ 533 (567)
+.+++... . .|.++|+.+. +.+..+... .....+.|+||++ ++++.. .++.|.++|+.+++.+
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 87776642 3 7999999887 555555432 2578889999999 888888 4899999999999988
Q ss_pred E
Q 008393 534 T 534 (567)
Q Consensus 534 ~ 534 (567)
.
T Consensus 407 ~ 407 (426)
T 3c75_H 407 R 407 (426)
T ss_dssp E
T ss_pred E
Confidence 3
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=4e-12 Score=140.25 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=166.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEe-----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc-------
Q 008393 285 ASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 352 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~------- 352 (567)
+|...|..++|||||++||.+. ....|++||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566788999999999998543 3357999999999865431 111113567899 9999999888743
Q ss_pred ------EEEEEcCCCCc---eeEEecc-CCCcEEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCe-eeEEEeCC--ee
Q 008393 353 ------VRVWDADNPGY---SLRTFMG-HSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGS-CTRVFKGG--TA 416 (567)
Q Consensus 353 ------I~iwd~~~~~~---~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~d---g~I~iwd~~~~~-~~~~~~~~--~~ 416 (567)
|++|++.+... .+..... |...+..+.|+|+++.++++...+ ..|++||+.++. ....+... ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987432 2222223 455678999999999888776543 589999998763 23333322 12
Q ss_pred EEEEecCCCEEEEEECC----CeEEEEECCCCeE--EEEecCCCCCeeEEEEcCCCCEEEEEeC-C---eEEEEeCCCCC
Q 008393 417 QMRFQPHLGRYLAAAAE----NVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGS 486 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d---~I~iwd~~~~~ 486 (567)
...++++++.++..+.. +.|..+|+.++.. ...+..|...+. .|+++++.|+.... + .|++|++..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 22377788888777653 5899999988643 234555666554 88898887776653 3 5899998743
Q ss_pred CCceEEEeec-CCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcEEEe
Q 008393 487 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 535 (567)
Q Consensus 487 ~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 535 (567)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+
T Consensus 361 ---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 361 ---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp ---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred ---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 3334432 33456677788888888777665 7999999988765533
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=1.2e-10 Score=114.49 Aligned_cols=225 Identities=9% Similarity=0.035 Sum_probs=151.2
Q ss_pred cccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 326 EEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..+.....+..|++++. ++++...++.|+.||..+... ..+ .....+.+++++++++ ++++ . ++.|.+||..+
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCC
Confidence 34445567889999655 556666788999999987332 223 2457899999999987 4433 3 67899999998
Q ss_pred CeeeEEEeC-------CeeEEEEecCCCEEEEEEC-----------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 405 GSCTRVFKG-------GTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 405 ~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
++....... ....+++.+++..+++... .+.|+.+|.. ++... +..+....+.++|+|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTS
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCC
Confidence 876544321 2466889998775544322 2355556554 33322 22233456789999999
Q ss_pred CEEEEEeC-C-eEEEEeCC--CCCC--CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 467 ELLASVSE-D-SVRVWTVG--SGSE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 467 ~~l~s~s~-d-~I~iwd~~--~~~~--~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
+.|+.+.. + .|.+|++. ++.. ...+..+.........++++++|++.++....+.|.+||..+++.+ .+..+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 97766554 4 89999873 4321 1223333333456788999999986666666789999999988776 555566
Q ss_pred CCeeEEEEe-cCCCEEEEEE
Q 008393 540 GLIAALAVS-TETGYVASAS 558 (567)
Q Consensus 540 ~~V~~l~~s-pdg~~l~s~s 558 (567)
..+++++|. |+++.|+.++
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEE
T ss_pred CCceEEEEeCCCCCEEEEEc
Confidence 789999998 8887665544
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.5e-10 Score=111.39 Aligned_cols=232 Identities=11% Similarity=-0.018 Sum_probs=162.2
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
....+.++++.++++++++...++.|.+||.. .......+......+.++++.+++. ++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe
Confidence 45578999999999887777778999999987 3332222333446799999998876 55466667889999988 554
Q ss_pred eEEE-e---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE-EEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEe
Q 008393 408 TRVF-K---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 481 (567)
Q Consensus 408 ~~~~-~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd 481 (567)
.... . .....+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++|+++++...+ .|.+||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 3222 1 245678888887666555557899999998 5544 2333345678999999999976666555 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE--eccccCCeeEEEEecCCCEEEEEEC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
. ++.. ...........+..+++++++..+++....+.|.+||. ++.... ...+...+.+++++++|+++++...
T Consensus 174 ~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 174 N-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp T-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred C-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 8 3321 11122234456889999999875555555678999998 555443 3344567899999999987776656
Q ss_pred CCcEEEcC
Q 008393 560 DKFVKLWK 567 (567)
Q Consensus 560 Dg~I~iWd 567 (567)
++.|.+|+
T Consensus 250 ~~~i~~~~ 257 (300)
T 2qc5_A 250 ANQIGRIT 257 (300)
T ss_dssp TTEEEEEC
T ss_pred CCeEEEEC
Confidence 67787765
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=2.5e-10 Score=112.02 Aligned_cols=226 Identities=13% Similarity=0.123 Sum_probs=153.7
Q ss_pred CCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 286 STSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 286 h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
+..-..+..|++++ .++++...++.|..||..+++.. .+ .....+.+++|+++++++++ . ++.|.+||.++ +..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcE
Confidence 33445588999964 55666667899999999887653 22 24567999999999985544 4 55699999986 332
Q ss_pred eEEecc----CCCcEEEEEEcCCCCeEEEEEeCC--------CcEEEEECCC-CeeeEEEe--CCeeEEEEecCCCEEEE
Q 008393 365 LRTFMG----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINN-GSCTRVFK--GGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 365 ~~~~~~----h~~~V~~l~~~p~~~~li~s~~~d--------g~I~iwd~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~ 429 (567)
...... ....+..+++.++|..++.+...+ ....+|.+.. ++...... .....++|+|++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 222111 124588999999987444332221 2234444432 33332222 34567999999988766
Q ss_pred EEC-CCeEEEEEC--CCCeE-----EEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 430 AAA-ENVVSILDA--ETQAC-----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 430 ~~~-dg~I~i~d~--~~~~~-----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+.. ++.|.+||+ .++.. ...+..+......++++++|++.++...+ .|.+||..++ +.+..+......
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~~ 242 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPVDK 242 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECSSSB
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCCCC
Confidence 655 789999987 45532 22333344567899999999988887777 8999999766 566777777778
Q ss_pred eEEEEEe-CCCCeEEEEEcC
Q 008393 501 FHSCVFH-PTYPSLLVIGCY 519 (567)
Q Consensus 501 i~~~~~s-p~~~~l~~~~~d 519 (567)
+++|+|. |+++.|++++..
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBC
T ss_pred ceEEEEeCCCCCEEEEEcCC
Confidence 9999998 888888777653
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.46 E-value=1e-12 Score=132.38 Aligned_cols=263 Identities=10% Similarity=0.036 Sum_probs=176.3
Q ss_pred ceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeeccc-------Cc
Q 008393 268 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SS 330 (567)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h-------~~ 330 (567)
++|..++ +.+..+.....+ .++|+|||++++++. .++.|.+||..+++.+.++... ..
T Consensus 50 vID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 50 VSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred EEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 4444443 556666544556 799999999998886 3688999999999999998643 12
Q ss_pred cEEEEEECCCCCeEEEEeC--CCcEEE--EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC--
Q 008393 331 LITDVRFSPSMPRLATSSF--DKTVRV--WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-- 404 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-- 404 (567)
....++|+|||++|+++.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.|+.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 3568899999999999875 356888 88876 233321 111 223466666676777899999999887
Q ss_pred ---CeeeEE----EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCC--eEEEEecCC----------CCCeeEEEEcCC
Q 008393 405 ---GSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGH----------TKPIDSVCWDPS 465 (567)
Q Consensus 405 ---~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h----------~~~V~~l~~sp~ 465 (567)
++.... +.-+..... .++++.++..+. +.|.+.|..+. +.+..+... ......++|+++
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred ccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 433211 111111113 777788888777 99999999764 233222111 011223789999
Q ss_pred CCEEEEEe----C------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE-E-cCCeEEEEECCCCcEE
Q 008393 466 GELLASVS----E------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI-G-CYQSLELWNMSENKTM 533 (567)
Q Consensus 466 g~~l~s~s----~------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~-~-~dg~I~iwd~~~~~~~ 533 (567)
++.++.+. . +.+.++|+.+. +.+..+.... ....++|++|+++++++ . .++.|.++|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 98877653 2 36679999887 4555554332 57889999999865555 4 4899999999999988
Q ss_pred EeccccCCeeEEEEec
Q 008393 534 TLTAHEGLIAALAVST 549 (567)
Q Consensus 534 ~~~~h~~~V~~l~~sp 549 (567)
....-......+++.+
T Consensus 351 ~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 351 SSVELDKGPESLSVQN 366 (368)
T ss_dssp EECCCCSCCCEEECCC
T ss_pred EEEECCCCCCEEEeec
Confidence 5544445566666654
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=9.5e-10 Score=109.51 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=150.6
Q ss_pred eEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 290 VICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 290 V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
..+.+|++++ .++++...++.|.+||..+++... +. ....+.+++|+++++++++. .++ |.+||..+. ......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g-~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATG-VLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTC-CEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCC-cEEEEe
Confidence 4578899975 455666678899999998876542 22 34579999999999876654 444 999998763 322221
Q ss_pred cc----CCCcEEEEEEcCCCCeEEEEEeC-----CCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CCeE
Q 008393 369 MG----HSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVV 436 (567)
Q Consensus 369 ~~----h~~~V~~l~~~p~~~~li~s~~~-----dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I 436 (567)
.. ....+.+++++++|..++.+.+. .+.|..++ +++...... .....++|++++..++++.. ++.|
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 11 12468899999998744433221 24566666 455443322 34567899999988776654 6899
Q ss_pred EEEECC--CC-e-----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 437 SILDAE--TQ-A-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 437 ~i~d~~--~~-~-----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.+||.. ++ . ....+......+..++++++|.++++...+ .|.+||. ++ +.+..+......+.+++|.
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEEE
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEEe
Confidence 999985 55 2 233343344567889999999988777665 8999998 33 4556666666779999998
Q ss_pred -CCCCeEEEEEcCC
Q 008393 508 -PTYPSLLVIGCYQ 520 (567)
Q Consensus 508 -p~~~~l~~~~~dg 520 (567)
+++..|++++..+
T Consensus 280 g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 280 GPDASRLLVTSARE 293 (326)
T ss_dssp STTSCEEEEEEBCT
T ss_pred cCCCCEEEEEecCC
Confidence 8888887776543
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=8.7e-11 Score=115.84 Aligned_cols=231 Identities=7% Similarity=0.043 Sum_probs=154.2
Q ss_pred eecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 324 NLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
.+.........+.|+++++ ++++...++.|..|+... . +..+..+...+..+++.++|. ++++...++.|.+|+.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECT
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECC
Confidence 3334445577899999998 566667788999999843 3 345555677899999999986 5545445678999998
Q ss_pred CCCeeeEEEe-------CCeeEEEEecCCCEEEE----EEC-------------CCeEEEEECCCCeEEEEecCCCCCee
Q 008393 403 NNGSCTRVFK-------GGTAQMRFQPHLGRYLA----AAA-------------ENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 403 ~~~~~~~~~~-------~~~~~~~~~~~~~~l~~----~~~-------------dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
. ++...... .....+.+.+++..+++ +.. .+.|+.||..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 54332211 12456889998876664 221 357888888776544333 334567
Q ss_pred EEEEcCCCCEEEEEeC-------CeEEEEeCCCCCCCceEEEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 459 SVCWDPSGELLASVSE-------DSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~-------d~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.++|+|+++.|+.+.. ..|++|++..+. ......+ .........++++++|+ |+++.. +.|.+|+....
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g~ 268 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDGQ 268 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTSC
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCCC
Confidence 8999999997776654 379999986542 1111111 11233345678999998 555554 45999998544
Q ss_pred cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 531 KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
....+..+. .+.+++|+++++.|+.++.++..++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 333444443 5899999999998888887765554
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=6e-10 Score=110.97 Aligned_cols=218 Identities=10% Similarity=0.061 Sum_probs=146.1
Q ss_pred EEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 332 ITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 332 V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
...++|++++. ++++...++.|.+||..+ +.. ..+. ....+.+++|.+++..++ +. . ..|.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~~-~~~~v~~i~~~~dg~l~v-~~-~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS-GRK-TVHA-LPFMGSALAKISDSKQLI-AS-D-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT-TEE-EEEE-CSSCEEEEEEEETTEEEE-EE-T-TEEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC-CcE-EEEE-CCCcceEEEEeCCCeEEE-EE-C-CCEEEEECCCCcEEEE
Confidence 56778999755 556666788999999986 332 2332 356799999999976444 33 3 4599999988876544
Q ss_pred EeC-------CeeEEEEecCCCEEEEEEC------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C-
Q 008393 411 FKG-------GTAQMRFQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D- 475 (567)
Q Consensus 411 ~~~-------~~~~~~~~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d- 475 (567)
... ....+.+++++..+++... .+.|+.+| +++... +..+......++|+++|+.|+.+.. +
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 321 2467889998875554432 25677777 454433 2223345678999999987766653 4
Q ss_pred eEEEEeCC--CC-CC--CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe-
Q 008393 476 SVRVWTVG--SG-SE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS- 548 (567)
Q Consensus 476 ~I~iwd~~--~~-~~--~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s- 548 (567)
.|.+||+. ++ .. ...+..+.........++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g 280 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIG 280 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEES
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEec
Confidence 89999985 44 21 12233333334557789999999866666667899999984 5444 555566679999998
Q ss_pred cCCCEEEEEEC
Q 008393 549 TETGYVASASH 559 (567)
Q Consensus 549 pdg~~l~s~s~ 559 (567)
++++.|+.++.
T Consensus 281 ~d~~~L~vt~~ 291 (326)
T 2ghs_A 281 PDASRLLVTSA 291 (326)
T ss_dssp TTSCEEEEEEB
T ss_pred CCCCEEEEEec
Confidence 88877655543
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=4.2e-10 Score=114.31 Aligned_cols=253 Identities=12% Similarity=0.041 Sum_probs=165.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE--
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 375 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V-- 375 (567)
++..+++++.++.|..+|..+++.+................ +..+++++.++.|..+|..+ ++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceee
Confidence 45578888899999999999999887776543322222222 44888889999999999988 44444333221111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE----------E--EEecCCCEEEEEECCCeEEEEE
Q 008393 376 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----------M--RFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 376 ---~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~----------~--~~~~~~~~l~~~~~dg~I~i~d 440 (567)
...... +. .++.+..++.|..+|..+++.+..+...... + .....++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 3446788999999999999988776532110 0 0011357888888899999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEc
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.++++.+..... .....+... +..|+.++.+ .|..+|..++ +.+..... ....+....+ .+..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 999998877653 334445443 5567777777 9999999887 34444431 1222222233 2567999999
Q ss_pred CCeEEEEECCCCcEE-EeccccCCee-EEEEecCCCEEEEEECCCcEEEcC
Q 008393 519 YQSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 519 dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|.|++||..+++.+ ........+. .... .+..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 999999999999877 3333233332 2233 245788889999999875
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=3.4e-10 Score=111.59 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=157.9
Q ss_pred eccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 283 VRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+..+.....+.+|+++|+ +++++..++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g- 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG- 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-
Confidence 334455567899999998 5667777899999998 444 345555677799999999998666665667899999862
Q ss_pred CceeEEeccC-----CCcEEEEEEcCCCCeEEEE----EeC-------------CCcEEEEECCCCeeeEEE-eCCeeEE
Q 008393 362 GYSLRTFMGH-----SASVMSLDFHPNKDDLICS----CDG-------------DGEIRYWSINNGSCTRVF-KGGTAQM 418 (567)
Q Consensus 362 ~~~~~~~~~h-----~~~V~~l~~~p~~~~li~s----~~~-------------dg~I~iwd~~~~~~~~~~-~~~~~~~ 418 (567)
. . ..+..+ ...+..+++.++|. ++++ |.. .+.|+.||..+++..... ......+
T Consensus 117 ~-~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl 193 (305)
T 3dr2_A 117 Q-A-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGL 193 (305)
T ss_dssp C-E-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEE
T ss_pred C-E-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcce
Confidence 2 2 222111 23467899999986 4444 221 256888888776654432 2345678
Q ss_pred EEecCCCEEEEEECC------CeEEEEECCCCeEE--EEe-cCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 419 RFQPHLGRYLAAAAE------NVVSILDAETQACR--LSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 419 ~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~--~~~-~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+|+|++..++++... +.|.+||+...... ..+ .........++++++|++.++ ..+.|.+|+.. + +
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~gv~~~~~~-g---~ 268 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTGVCVFDSD-G---Q 268 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSEEEEECTT-S---C
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCcEEEECCC-C---C
Confidence 999999988887775 78999998765311 111 112344567999999995554 45589999974 3 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.+..+.... .+.+++|.++++.|++++.+ .|+.+++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEEC
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEEC
Confidence 555555444 58889999999988888875 4544443
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=1.4e-11 Score=123.96 Aligned_cols=245 Identities=9% Similarity=-0.003 Sum_probs=161.8
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcCCCCceeEEeccC-------C
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH-------S 372 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~h-------~ 372 (567)
.|.++|..+++.+.++..-..+ .+.|+||+++++++. .++.|.+||+.+ .+.+.++.-. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccC
Confidence 8889999999999999866566 799999999998886 368899999998 6666666432 1
Q ss_pred CcEEEEEEcCCCCeEEEEEeC-CCcEEE--EECCCCeeeEEEeCCeeEEEEecCCC-EEEEEECCCeEEEEECCC-----
Q 008393 373 ASVMSLDFHPNKDDLICSCDG-DGEIRY--WSINNGSCTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAET----- 443 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~~-dg~I~i--wd~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~----- 443 (567)
.....+.|+|+|++++++... +..|.+ +|+.+ +..+..+.. ..+.|++. .+++.+.|+.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 235679999999988866543 467888 99877 444432211 22334443 445556688888899887
Q ss_pred CeEEEE----ecCCCCCeeEEEEcCCCC-EEEEEeCCeEEEEeCCCCCCCceEEEeecC----------CCceEEEEEeC
Q 008393 444 QACRLS----LQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHP 508 (567)
Q Consensus 444 ~~~~~~----~~~h~~~V~~l~~sp~g~-~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~----------~~~i~~~~~sp 508 (567)
++.... +.....+. . .+++. ++++.. +.|.+.|+.+.. ...+..+... ......++|++
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEeccccccccccccCcceeeEEcC
Confidence 443211 11112333 3 45444 444444 888889986431 1222222111 01111258999
Q ss_pred CCCeEEEEEc-C--------CeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEEEcC
Q 008393 509 TYPSLLVIGC-Y--------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~-d--------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iWd 567 (567)
++++++++.. . +.+.++|+.+.+.+....-......|+|++||+ ++++.. .++.|.++|
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 9999998754 2 356799999998874333333689999999998 456666 589999886
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=9.9e-15 Score=148.44 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=121.7
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCC-cEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVM 376 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 376 (567)
++..|++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+ ++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 577899999999999999999999988876 4555555667787888888999999999987 444333332211 110
Q ss_pred -EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC
Q 008393 377 -SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 455 (567)
Q Consensus 377 -~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 455 (567)
+..+. .+. .+++++.|+.|+.||..+++.+..+..+. ...++|+++.+++++.++.|+.||.++++.+..+..+.
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 00111 223 45577889999999999999887776543 34566788889999999999999999998766554221
Q ss_pred CeeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE--EEcCCeEEEEECCC
Q 008393 456 PIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV--IGCYQSLELWNMSE 529 (567)
Q Consensus 456 ~V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~--~~~dg~I~iwd~~~ 529 (567)
....++..+. ..+++++.+ .|+.||..++ +.+.........+...+++.++...+. ...++.++.+|..+
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~t 236 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS 236 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHH
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhc
Confidence 1223333332 445667777 9999999887 455555433322333344555542110 01133455666555
Q ss_pred Cc
Q 008393 530 NK 531 (567)
Q Consensus 530 ~~ 531 (567)
++
T Consensus 237 G~ 238 (369)
T 2hz6_A 237 GE 238 (369)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 224
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.30 E-value=2.3e-10 Score=113.57 Aligned_cols=259 Identities=10% Similarity=0.051 Sum_probs=168.9
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
+...+.++.+.++|.+++ ++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. +...
T Consensus 58 ~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~--g~~~ 129 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD--GTEK 129 (330)
T ss_dssp GGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT--SCEE
T ss_pred CCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC--CCEE
Confidence 444567788887876444 4444 888886 666655554333333333333 5578888889999999987 3334
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
..+..+...+.++...+++. ++ .++.++.|..||.. ++.+..+.. ....+.+..++ .+++++ +.|..|| .
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~v~t--~~l~~~d-~ 202 (330)
T 3hxj_A 130 WRFKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIYFGS--DKVYAIN-P 202 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEEEES--SSEEEEC-T
T ss_pred EEEcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEEEEe--CEEEEEC-C
Confidence 44444455566677776654 44 57778999999999 777666543 23344555554 455555 8899999 7
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
+++.+..+......+.++.+.++|.+.+....+.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|
T Consensus 203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl 277 (330)
T 3hxj_A 203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHL 277 (330)
T ss_dssp TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEE
T ss_pred CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCE
Confidence 7777777776667788999998887655443348888874 33 3444444444434445565555 58888888899
Q ss_pred EEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 523 ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 523 ~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+.+|. +++.. .+......+.++....++. |..++.+|.+++.
T Consensus 278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 278 YAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp EEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred EEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 99996 55544 4444456677888877776 5558889988864
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=5.4e-10 Score=122.45 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=178.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCc-----------cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----------LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~-----------~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|..+|..+|+.+..+..... ....+++ ++..|++++.|+.|..+|..+ ++.+-.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~t-G~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAAT-GKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 45677777789999999999999988764321 0112333 456889999999999999998 554444
Q ss_pred eccC-C----CcEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCCe---------------------
Q 008393 368 FMGH-S----ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT--------------------- 415 (567)
Q Consensus 368 ~~~h-~----~~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~~--------------------- 415 (567)
+..+ . ..+.+ ..+. +..+++..+ .++.|+.||..+++.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 4433 1 11211 1111 344543332 27899999999999987765311
Q ss_pred --------------eEEEEecCCCEEEEEECCC-------------------eEEEEECCCCeEEEEecC--CC------
Q 008393 416 --------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT------ 454 (567)
Q Consensus 416 --------------~~~~~~~~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~------ 454 (567)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 2467888999998887664 599999999999988764 21
Q ss_pred -CCeeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-----------Cce-----------------
Q 008393 455 -KPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCNG-----------NKF----------------- 501 (567)
Q Consensus 455 -~~V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-----------~~i----------------- 501 (567)
....-+....+| ..|+.++.+ .|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223333477 678888888 99999999884 333332111 011
Q ss_pred -------EEEEEeCCCCeEEEEEcC-------------------------------------------CeEEEEECCCCc
Q 008393 502 -------HSCVFHPTYPSLLVIGCY-------------------------------------------QSLELWNMSENK 531 (567)
Q Consensus 502 -------~~~~~sp~~~~l~~~~~d-------------------------------------------g~I~iwd~~~~~ 531 (567)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889998888876432 689999999999
Q ss_pred EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+-...+..++....+..++.+++.++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=3.1e-10 Score=124.54 Aligned_cols=261 Identities=11% Similarity=0.096 Sum_probs=172.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc----------E-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~----------V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|..+|..+|+.+..+..+... + ..+.+ .+..|++++.|+.|..+|..++ +.+-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG-~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTG-QRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCC-CEeee
Confidence 557777888899999999999999887643221 0 11222 3558899999999999999984 44433
Q ss_pred ecc--CCC---cEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCC----------------------
Q 008393 368 FMG--HSA---SVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG---------------------- 414 (567)
Q Consensus 368 ~~~--h~~---~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~---------------------- 414 (567)
+.. +.. .+.+ ..+. + ..+++..+ .++.|+.||.++++.+..+...
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVV-N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred ecCcCCCCCCccccCCcEEE-C-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 322 111 1111 1111 3 34443322 3789999999999998776521
Q ss_pred ------------eeEEEEecCCCEEEEEECCC-------------------eEEEEECCCCeEEEEecC--CC-------
Q 008393 415 ------------TAQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT------- 454 (567)
Q Consensus 415 ------------~~~~~~~~~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~------- 454 (567)
-..+.+.++.+.++++..++ .|..+|.++++.+..+.. |.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01467888889999888775 399999999999988764 22
Q ss_pred CCeeEEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC--------------------------------
Q 008393 455 KPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------------------------- 498 (567)
Q Consensus 455 ~~V~~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-------------------------------- 498 (567)
..+.......+|+ +|+.++.+ .++++|..+++. +.......
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1122222223565 78888888 999999988843 22111100
Q ss_pred -------CceEEEEEeCCCCeEEEEEc---------------------------------------------CCeEEEEE
Q 008393 499 -------NKFHSCVFHPTYPSLLVIGC---------------------------------------------YQSLELWN 526 (567)
Q Consensus 499 -------~~i~~~~~sp~~~~l~~~~~---------------------------------------------dg~I~iwd 526 (567)
.....++|+|+...+++... +|.|+.||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 00122688998888877632 36799999
Q ss_pred CCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 527 MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.+++.+-...+..++..-.+...+.+|++++.||.|+.||
T Consensus 462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99999873333333444446667788999999999999986
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=2.6e-09 Score=108.43 Aligned_cols=253 Identities=8% Similarity=0.075 Sum_probs=162.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC---------ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS---------SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~---------~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
+..|++++.++.|..||.++++.+....... ..+.+.. ..++..|++++.++.|..+|..+ ++.+-.+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSD-GTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCC-CCEEEEEe
Confidence 5577788889999999999999887766421 2232221 12355888899999999999998 44443333
Q ss_pred cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEE------EEecCCCEEEEEECCCeEEEEECCC
Q 008393 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM------RFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
............ + . .++.++.++.|..+|..+++.+..+....... .....++.++++..++.|..+|..+
T Consensus 131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTT
T ss_pred CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCC
Confidence 222211112222 2 3 44477889999999999999887776432211 0111257788888899999999999
Q ss_pred CeEEEEecCCCCC----------e-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 444 QACRLSLQGHTKP----------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 444 ~~~~~~~~~h~~~----------V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
++.+......... + ....+ .+..++.++.+ .|..+|..++ +.+..... .....+.. ++.
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~~ 278 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DGN 278 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ETT
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--ECC
Confidence 9988776532110 1 11111 24566667766 9999999887 34433332 22333343 466
Q ss_pred eEEEEEcCCeEEEEECCCCcEE-Eec-cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|++++.++.|+.+|..+++.. ... .....+..+.+. +..|+.++.+|.|.+||
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 7999999999999999999876 333 122233333432 45788888888888764
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.26 E-value=2.9e-08 Score=95.56 Aligned_cols=245 Identities=10% Similarity=0.017 Sum_probs=159.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCeee-----eeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCC
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSA 373 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~-----~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~ 373 (567)
.+|+.+. .+.|+.++++..... ..+......+..++|++++..|+.+. .++.|.+++++. ......+.....
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCC
Confidence 3455554 347888887654321 12222234578999999766666554 568899999976 332233333335
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACR 447 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~ 447 (567)
....+++++++..++++....+.|.++++.......... .....++++++++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 789999999877888777778899999987544333332 245778999988888777753 68888887654322
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEE
Q 008393 448 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLEL 524 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~i 524 (567)
............+++++++..|+.+... .|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 2222233467899999988777766654 8999998643 1122222 22334556654 556776664 479999
Q ss_pred EECCCCcEE-Eecccc-CCeeEEEEecCCC
Q 008393 525 WNMSENKTM-TLTAHE-GLIAALAVSTETG 552 (567)
Q Consensus 525 wd~~~~~~~-~~~~h~-~~V~~l~~spdg~ 552 (567)
+|..+++.. .+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999988876 333222 2477888888764
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.25 E-value=3.9e-09 Score=106.83 Aligned_cols=217 Identities=10% Similarity=0.008 Sum_probs=148.3
Q ss_pred CCCCeEEEE-eCCCcEEEEEcCCCC---ceeEEec------c-CCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEE
Q 008393 339 PSMPRLATS-SFDKTVRVWDADNPG---YSLRTFM------G-HSASVMSLDFHPNKDDLICSCDGD------GEIRYWS 401 (567)
Q Consensus 339 p~~~~l~s~-s~dg~I~iwd~~~~~---~~~~~~~------~-h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd 401 (567)
.+.++|+.. ..++.|.|+|+.+.. +..+++. . .......+...|+| +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 777777655 557889999997532 3344442 1 11245667888998 55566555 7899999
Q ss_pred CCCCeeeEEEeCC------eeEEEEecCCCEEEEEE-------------------CCCeEEEEECCCCeEEEEecCCC--
Q 008393 402 INNGSCTRVFKGG------TAQMRFQPHLGRYLAAA-------------------AENVVSILDAETQACRLSLQGHT-- 454 (567)
Q Consensus 402 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~-------------------~dg~I~i~d~~~~~~~~~~~~h~-- 454 (567)
.++.+.+..+..+ ...+.|+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888632 23477899999777774 36899999999998888776531
Q ss_pred CCeeEEEE--cCCCCEEEEEeC-----C--eEEEEeCCCCCCCceEEEe--ec----------------CCCceEEEEEe
Q 008393 455 KPIDSVCW--DPSGELLASVSE-----D--SVRVWTVGSGSEGECVHEL--SC----------------NGNKFHSCVFH 507 (567)
Q Consensus 455 ~~V~~l~~--sp~g~~l~s~s~-----d--~I~iwd~~~~~~~~~i~~~--~~----------------~~~~i~~~~~s 507 (567)
.....|.| +|++++++++++ . +|.+|....+ ....+..+ .. .......+.++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445655 999998888876 4 7777666432 11222211 11 02446788999
Q ss_pred CCCCeEEEEEcC-CeEEEEECCCC---cEE-Eeccc--------------cCCeeEEEEecCCCEEEEEE
Q 008393 508 PTYPSLLVIGCY-QSLELWNMSEN---KTM-TLTAH--------------EGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 508 p~~~~l~~~~~d-g~I~iwd~~~~---~~~-~~~~h--------------~~~V~~l~~spdg~~l~s~s 558 (567)
+||++|+++... +.|.+||+... +.+ .+... .+....++++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999998774 69999998633 223 12111 01368899999999999887
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=4.5e-10 Score=123.83 Aligned_cols=233 Identities=11% Similarity=0.089 Sum_probs=153.2
Q ss_pred cCccEEEEEECCCCCeEEEEe-----CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--------
Q 008393 328 HSSLITDVRFSPSMPRLATSS-----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------- 394 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-------- 394 (567)
|...+..+.|+|||++||.+. ....|++||++++......+.. .....++|+ |++.++++...+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 555788999999999888543 2357999999984322222221 112467899 988887655432
Q ss_pred ----CcEEEEECCCCee--eEEEeCC------eeEEEEecCCCEEEEEEC----CCeEEEEECCCCe-EEEEecCCCCCe
Q 008393 395 ----GEIRYWSINNGSC--TRVFKGG------TAQMRFQPHLGRYLAAAA----ENVVSILDAETQA-CRLSLQGHTKPI 457 (567)
Q Consensus 395 ----g~I~iwd~~~~~~--~~~~~~~------~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~-~~~~~~~h~~~V 457 (567)
..|++|++.+... ...+... ...+.++|++..+++... .+.|+++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 3499999987653 3333321 356789999998876654 2589999998763 344555566655
Q ss_pred eEEEEcCCCCEEEEEeC----C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCC
Q 008393 458 DSVCWDPSGELLASVSE----D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSE 529 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~----d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~ 529 (567)
... |+++|..|+..+. . .|.++|+.++.. .....+..+...+. .|++++++|++...++ .|++||+.+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 555 6666666555542 2 689999987532 12234445555554 8999999888776654 799999987
Q ss_pred CcEEEec-cccCCeeEEEEecCCCEEEEEECC----CcEEEcC
Q 008393 530 NKTMTLT-AHEGLIAALAVSTETGYVASASHD----KFVKLWK 567 (567)
Q Consensus 530 ~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~D----g~I~iWd 567 (567)
+....+. ...+.+..+.++++++.|+....+ +.|+.||
T Consensus 360 ~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 360 KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 6655443 344567778888888766655444 6676664
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=6.2e-09 Score=105.39 Aligned_cols=221 Identities=10% Similarity=0.063 Sum_probs=154.2
Q ss_pred EEc--CCCCeEEE-EeCCCcEEEEeCCCC----eeeeeec-------ccCccEEEEEECCCCCeEEEEeCC------CcE
Q 008393 294 HFS--SDGKLLAT-GGHDKKAVLWHTDTL----KSKTNLE-------EHSSLITDVRFSPSMPRLATSSFD------KTV 353 (567)
Q Consensus 294 ~~s--~dg~~las-g~~dg~I~vwd~~~~----~~~~~l~-------~h~~~V~~i~fsp~~~~l~s~s~d------g~I 353 (567)
.++ .++++|++ +..++.|.|+|+.+. +.+.+++ .-...-..+...|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 78887766 456789999999765 6666663 111245567888999 76666555 789
Q ss_pred EEEEcCCCCceeEEeccCC---CcEEEEEEcCCCCeEEEEEe-------------------CCCcEEEEECCCCeeeEEE
Q 008393 354 RVWDADNPGYSLRTFMGHS---ASVMSLDFHPNKDDLICSCD-------------------GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~li~s~~-------------------~dg~I~iwd~~~~~~~~~~ 411 (567)
.++|.++ .+.+..+.... ..-+.+.|+|+++.++ +.. .+..|.+||+.+++.+..+
T Consensus 167 ~vlD~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCC-CeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998 66666665221 2234688899988555 442 3689999999999888887
Q ss_pred eCC-----eeEEEE--ecCCCEEEEEEC------CCeEEEEECCCCeE--EEEe--cCC----------------CCCee
Q 008393 412 KGG-----TAQMRF--QPHLGRYLAAAA------ENVVSILDAETQAC--RLSL--QGH----------------TKPID 458 (567)
Q Consensus 412 ~~~-----~~~~~~--~~~~~~l~~~~~------dg~I~i~d~~~~~~--~~~~--~~h----------------~~~V~ 458 (567)
.-+ ...+.| +|++.++++++. ++.|.+|....++. ...+ ... .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 753 233445 999998888775 55787765544421 1111 110 23467
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCC--------------ceEEEEEeCCCCeEEEEE
Q 008393 459 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN--------------KFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~--------------~i~~~~~sp~~~~l~~~~ 517 (567)
.|.+++||++|+++..+ .|.+||+......+.+..+...+. .-..+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 89999999999999876 899999975545566666655421 357789999999999998
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=1.3e-09 Score=119.38 Aligned_cols=251 Identities=11% Similarity=0.082 Sum_probs=166.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeeccc-C----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCcee
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-S----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSL 365 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h-~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~ 365 (567)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+.. ... .+..+++++. ++.|+.||..+ ++.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~t-G~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAET-GERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTT-CCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCC-CcEE
Confidence 4568888889999999999999999888754 1 11211 111 1335555543 78999999998 4444
Q ss_pred EEeccCCC--------------------------------cEEEEEEcCCCCeEEEEEeCCC------------------
Q 008393 366 RTFMGHSA--------------------------------SVMSLDFHPNKDDLICSCDGDG------------------ 395 (567)
Q Consensus 366 ~~~~~h~~--------------------------------~V~~l~~~p~~~~li~s~~~dg------------------ 395 (567)
-.+..... ....++++++++.++ .+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeee
Confidence 33322111 113577888876555 555443
Q ss_pred -cEEEEECCCCeeeEEEeCC------------eeEEEEecCC---CEEEEEECCCeEEEEECCCCeEEEEecCCCCC---
Q 008393 396 -EIRYWSINNGSCTRVFKGG------------TAQMRFQPHL---GRYLAAAAENVVSILDAETQACRLSLQGHTKP--- 456 (567)
Q Consensus 396 -~I~iwd~~~~~~~~~~~~~------------~~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--- 456 (567)
.|..+|.++++.+..+... ...+....++ ..++++..+|.|+++|.++++.+..+......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 5999999999998887531 1122233355 56777888999999999999998776532100
Q ss_pred --------e------------------------eEEEEcCCCCEEEEEeC------------------------------
Q 008393 457 --------I------------------------DSVCWDPSGELLASVSE------------------------------ 474 (567)
Q Consensus 457 --------V------------------------~~l~~sp~g~~l~s~s~------------------------------ 474 (567)
+ ..++|+|++.++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 1 15688998888877532
Q ss_pred --------------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-cc
Q 008393 475 --------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AH 538 (567)
Q Consensus 475 --------------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h 538 (567)
+.|..||+.++ +.+..+.. ...+....+...+..+++++.++.|++||..+++.+ .+. .+
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 26889999887 45555443 233444567778888999999999999999999987 343 33
Q ss_pred cCCeeEEEEecCCCEEEE
Q 008393 539 EGLIAALAVSTETGYVAS 556 (567)
Q Consensus 539 ~~~V~~l~~spdg~~l~s 556 (567)
.....-+.|..+|+.++.
T Consensus 519 ~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCCEEEEeCCEEEEE
Confidence 333445667788875443
No 233
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=2.1e-10 Score=115.83 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=128.5
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-------------eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------------CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.+..|++++... ++++|+.+ .+++|++.... ....+.. +..++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 588899999866 55577766 56669865332 2333445 888999 77888877 889999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+.+.........|...+.++.+.+.. +++++.| .|.+||+..+. ... ....|.+++|+|+| +++|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98876665666778889888877653 7777777 99999998653 222 23579999999999 7889999
Q ss_pred CeEEEEECCCCcE---EEe------c---cccCCeeEEEEecCCCEEEEEE
Q 008393 520 QSLELWNMSENKT---MTL------T---AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 520 g~I~iwd~~~~~~---~~~------~---~h~~~V~~l~~spdg~~l~s~s 558 (567)
|.|++|+...+.. .++ . +|...|.+|.|.+++.++++-+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999888773 244 2 3778899999999998887643
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.20 E-value=3.2e-09 Score=116.56 Aligned_cols=251 Identities=11% Similarity=0.101 Sum_probs=161.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeeccc--CccEEEEEECC---CCCeEEEEe------CCCcEEEEEcCCCCceeE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fsp---~~~~l~s~s------~dg~I~iwd~~~~~~~~~ 366 (567)
++..|++++.|+.|..+|.++|+.+..+... ......+..+| ++ .+++++ .+|.|+.||..+ ++.+-
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAET-GKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT-CCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCC-CcEEE
Confidence 3568888889999999999999998877642 11111111122 44 444443 378999999998 44433
Q ss_pred Eecc-C------------------------------CCcEEEEEEcCCCCeEEEEEeCCC-------------------c
Q 008393 367 TFMG-H------------------------------SASVMSLDFHPNKDDLICSCDGDG-------------------E 396 (567)
Q Consensus 367 ~~~~-h------------------------------~~~V~~l~~~p~~~~li~s~~~dg-------------------~ 396 (567)
.+.. . ......+++.++++ +++.+..++ .
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 3321 0 01112577888765 455676665 3
Q ss_pred EEEEECCCCeeeEEEeCC------------eeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCC-C-----
Q 008393 397 IRYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT-K----- 455 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~----- 455 (567)
|..||.++++.+..+... ........++. .++++..+|.++++|.++++.+....... .
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence 999999999999877631 01111222443 57777789999999999999875432211 0
Q ss_pred ---------------------------------CeeEEEEcCCCCEEEEEeC----------------------------
Q 008393 456 ---------------------------------PIDSVCWDPSGELLASVSE---------------------------- 474 (567)
Q Consensus 456 ---------------------------------~V~~l~~sp~g~~l~s~s~---------------------------- 474 (567)
....++|+|+..+|++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0123788998887776521
Q ss_pred -----------------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee
Q 008393 475 -----------------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL 535 (567)
Q Consensus 475 -----------------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~ 535 (567)
+ .|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 2 6888999887 5555554433 2333366677888999999999999999999988 44
Q ss_pred ccc-cCCeeEEEEecCCCEEE
Q 008393 536 TAH-EGLIAALAVSTETGYVA 555 (567)
Q Consensus 536 ~~h-~~~V~~l~~spdg~~l~ 555 (567)
... .....-+.|..+|+.++
T Consensus 513 ~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 513 PAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp ECSSCCCSCCEEEEETTEEEE
T ss_pred eCCCCcccCceEEEECCEEEE
Confidence 433 22234567778887443
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=2.5e-10 Score=113.29 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=167.3
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+..+..+| .|.+++.++.|..|| .+++.......+...+.++...+++. |+.++.+ |..||. + +..+..+...
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~-g~~~~~~~~~ 96 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-D-GTEKWRFDTK 96 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-C-GGGGGGSCC-
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-C-CcEEEEEECC
Confidence 34555566 456677788999999 88888877766666677888877774 5555555 888886 3 3333222222
Q ss_pred CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE
Q 008393 372 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 448 (567)
........+. + ..++ .++.++.|..+|.. ++....+... ...+...++ +.+++++.++.|..||.. ++.+.
T Consensus 97 ~~~~~~~~~~-~-~~l~-v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 97 KAIVSDFTIF-E-DILY-VTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ----CCEEEE-T-TEEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEE
T ss_pred CCcccCceEE-C-CEEE-EEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeE
Confidence 2222233333 3 3344 67788999999998 7766555432 233444444 557778888999999999 88777
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 449 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 449 ~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+......+.++.+.+++.+++.. +.|..|| .++ ..+.........+.++.+.+++. |++++.++.|..+|..
T Consensus 171 ~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD 243 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred EEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence 776666678888888888866554 8889999 554 34445554556677778888775 7778888899999854
Q ss_pred CCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
......+......+.++.+.+++. |..++.+|.|..+|
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 444434444444455666665664 55677777777664
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=1e-09 Score=110.09 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=149.7
Q ss_pred ccEEEEEECCCCCeEEEEe--CCCcEEEEEcCCCCceeEEe-------ccCCCcEEEEEEcCCCCeEEEEEeC-----CC
Q 008393 330 SLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDG-----DG 395 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~p~~~~li~s~~~-----dg 395 (567)
.....|+++++|+++++.. .++.++||.+++ +. +..+ ..|...+..+++++++. |+++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 6789999999999888864 234356666653 43 2222 23457899999999865 5544333 57
Q ss_pred cEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEE----CCCeEEEEECCCCeEEEEecCCCCCee-EEE
Q 008393 396 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAA----AENVVSILDAETQACRLSLQGHTKPID-SVC 461 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~----~dg~I~i~d~~~~~~~~~~~~h~~~V~-~l~ 461 (567)
.|.+||+.+++.++.+.. ....+++.++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999999987776653 247889998777776665 468999999999988777765432211 133
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECC---CCc-----
Q 008393 462 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS---ENK----- 531 (567)
Q Consensus 462 ~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~---~~~----- 531 (567)
+..+|..+.+...+ .++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 44567666666666 655553 1356789999999999988776 66666532 111
Q ss_pred ---EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 ---TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ---~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+...++.+....++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012224455677899999999888888888999985
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.14 E-value=2.3e-09 Score=112.25 Aligned_cols=254 Identities=10% Similarity=0.051 Sum_probs=171.4
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeecc---------------------------------cC------ccEEEEEECC---
Q 008393 302 LATGGHDKKAVLWHTDTLKSKTNLEE---------------------------------HS------SLITDVRFSP--- 339 (567)
Q Consensus 302 lasg~~dg~I~vwd~~~~~~~~~l~~---------------------------------h~------~~V~~i~fsp--- 339 (567)
|.+|+..|.|+|+-+.+++.+..+.- +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 45677888888888777766655421 01 1122344554
Q ss_pred --CCCeEEEEeC-CCcEEEEEcCCCCceeEEecc-CCCcEEEEEE-c-CCCCeEEEEE-----------------eCCCc
Q 008393 340 --SMPRLATSSF-DKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-H-PNKDDLICSC-----------------DGDGE 396 (567)
Q Consensus 340 --~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~-~-p~~~~li~s~-----------------~~dg~ 396 (567)
||++|+.+.. +..|.+.|+++ .++...+.- ....+..+++ . |+++++++++ -.++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t-~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCC-ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 55699999998 565554432 2355888998 4 8998887664 33568
Q ss_pred EEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCC--------------------------------------eE
Q 008393 397 IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN--------------------------------------VV 436 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg--------------------------------------~I 436 (567)
|.++|..+.+.+..+. +...-+.++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999998887765 3445678999999998888543 37
Q ss_pred EEEECCC--CeE-EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCC--------CC-ceEEEeecCCCceE
Q 008393 437 SILDAET--QAC-RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGS--------EG-ECVHELSCNGNKFH 502 (567)
Q Consensus 437 ~i~d~~~--~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~--------~~-~~i~~~~~~~~~i~ 502 (567)
.+.|.++ ++. +..+.. .....++.++|||+++++++.. +|.++|+.+.. .. ..+..+ .-+....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence 7777777 433 334432 2345689999999999988866 89999998531 01 122333 3455678
Q ss_pred EEEEeCCCCeEEE-EEcCCeEEEEECCC----------CcEE-EeccccCC-----eeEEEEecCCCEEEEEEC
Q 008393 503 SCVFHPTYPSLLV-IGCYQSLELWNMSE----------NKTM-TLTAHEGL-----IAALAVSTETGYVASASH 559 (567)
Q Consensus 503 ~~~~sp~~~~l~~-~~~dg~I~iwd~~~----------~~~~-~~~~h~~~-----V~~l~~spdg~~l~s~s~ 559 (567)
.++|+++| ++++ ...++.|.+||+.+ ...+ ++..|-.+ -..+.++|||++|+++..
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 88999999 5554 45678999999976 3334 44444332 123345899999998763
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.13 E-value=3.7e-08 Score=93.82 Aligned_cols=203 Identities=9% Similarity=0.043 Sum_probs=144.9
Q ss_pred eeeeeecccC--ccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCC
Q 008393 320 KSKTNLEEHS--SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD 394 (567)
Q Consensus 320 ~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~d 394 (567)
+.+.++. |. .....+.|++++.++++.+. ++.|.++|+.+ ++.+..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455553 33 23678999998644444443 57899999998 55555543 222233456665 56788777789
Q ss_pred CcEEEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-----CCeeEEEEcCCCCE
Q 008393 395 GEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGEL 468 (567)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~ 468 (567)
+.|.++|..+.+.+..+..+ .....+.+++++++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 99999999999999988755 4456677788888888888999999999998887776321 246788888 7765
Q ss_pred EEEEeCC-eEEEEeCCCCCCCceEEEeecC-------------CCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC
Q 008393 469 LASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 530 (567)
Q Consensus 469 l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 530 (567)
++....+ .|.+.|..++ +.+..+... ......++|+|+++.+++++. .+.|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5555444 9999999887 455555432 135689999999988777765 568888887654
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=4.5e-11 Score=121.30 Aligned_cols=200 Identities=11% Similarity=0.055 Sum_probs=110.5
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEE-
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM- 418 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~- 418 (567)
++..|++++.||.|+.||..+ ++.+..+.. +.+.+..+..++. ++++++.|+.|+.||..+++.+..+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 467899999999999999998 555555554 4455555555544 55577889999999999998876654321100
Q ss_pred --E-EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 419 --R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 --~-~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
. ....++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++.+ .|+.||.++++..-... .
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~ 158 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-Y 158 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-E
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-c
Confidence 0 11135678888889999999999999988877553 23456788888888888 99999999885432222 1
Q ss_pred ecCCCceEEEEEeCCC---CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeE-EEEecCCC
Q 008393 495 SCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA-LAVSTETG 552 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~-l~~spdg~ 552 (567)
.. ....++..+. ..+++++.++.|+.||..+++.+-......++.. ..++.++.
T Consensus 159 ~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 159 FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred cc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 11 1122333332 5688899999999999999987733334445443 34455554
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=2.3e-08 Score=109.38 Aligned_cols=261 Identities=12% Similarity=0.113 Sum_probs=168.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc----------E-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~----------V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|..+|..+|+.+.++...... + ..+.+ .+..|++++.|+.|..+|..++ +.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG-~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTG-KAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCC-CEeee
Confidence 456777778899999999999998887643211 0 11222 3457888999999999999984 44433
Q ss_pred eccC-C---CcEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCC----e------------------
Q 008393 368 FMGH-S---ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG----T------------------ 415 (567)
Q Consensus 368 ~~~h-~---~~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~----~------------------ 415 (567)
+... . ..+.+ ..+. +..+++..+ .+|.|+.||.++++.+..+... .
T Consensus 143 ~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 3321 1 11111 1111 234443322 2589999999999998877521 0
Q ss_pred ------------eEEEEecCCCEEEEEECCC-------------------eEEEEECCCCeEEEEecC--CC-------C
Q 008393 416 ------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT-------K 455 (567)
Q Consensus 416 ------------~~~~~~~~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~-------~ 455 (567)
..+++.+..+.++++..++ .|..+|.++++.+..+.. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 1367888888888887765 499999999999988764 22 2
Q ss_pred CeeEEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC------------Cc-------------------
Q 008393 456 PIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG------------NK------------------- 500 (567)
Q Consensus 456 ~V~~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~------------~~------------------- 500 (567)
+.....+..+|+ +|+.++.+ .++++|..+++. +....... .+
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 222233334665 67788888 999999988843 32111110 00
Q ss_pred -----eEEEEEeCCCCeEEEEE------------------------------------cCCeEEEEECCCCcEEEecccc
Q 008393 501 -----FHSCVFHPTYPSLLVIG------------------------------------CYQSLELWNMSENKTMTLTAHE 539 (567)
Q Consensus 501 -----i~~~~~sp~~~~l~~~~------------------------------------~dg~I~iwd~~~~~~~~~~~h~ 539 (567)
...++++|+...+++.. .+|.|+.||+.+++.+-...+.
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 11257888777666522 2378999999999987322233
Q ss_pred CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 540 GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+....+...+.+|++++.||.|+.||
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 3444445556788899999999999885
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=4.7e-08 Score=91.98 Aligned_cols=190 Identities=14% Similarity=0.176 Sum_probs=136.6
Q ss_pred eeeeeecccC--ccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEEeccCCCcE--EEEEEcCCCCeEEEEEeC
Q 008393 320 KSKTNLEEHS--SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDG 393 (567)
Q Consensus 320 ~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~~p~~~~li~s~~~ 393 (567)
+.+.++. |. .....+.|+ ++.++.+.+.+| .|+++|+++ ++.+..+.-. ... ..+++. ++.+++....
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIELG-KRYFGEGISDW--KDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEECC-TTCCEEEEEEE--TTEEEEEESS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEecC-CccceeEEEEe--CCEEEEEEee
Confidence 3445553 33 335788888 666666667666 899999998 5555555432 233 334444 5677777777
Q ss_pred CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC--C---CCeeEEEEcCCCCE
Q 008393 394 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGEL 468 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~---~~V~~l~~sp~g~~ 468 (567)
++.+.+||..+.+.+..+..+.....+.++++.++++..++.|.++|..+.+.+..+.-. . ..++.+.|. +|++
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 999999999999999999876555666678888888887889999999999888776542 1 335567886 7766
Q ss_pred EEEEeCC-eEEEEeCCCCCCCceEEEeecC------------CCceEEEEEeCCCCeEEEEEcC
Q 008393 469 LASVSED-SVRVWTVGSGSEGECVHELSCN------------GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 469 l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~------------~~~i~~~~~sp~~~~l~~~~~d 519 (567)
++....+ .|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6555455 9999999888 444444432 2457899999999999888875
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.02 E-value=1.3e-06 Score=97.72 Aligned_cols=265 Identities=11% Similarity=0.099 Sum_probs=176.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+...|.++...++|.+.+ |+.++-|.+||..+++....... ....|.++...++|.+.+ |+.+| |.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcC
Confidence 356789999888886555 44455588999887665433221 245699999998886544 44555 899998
Q ss_pred CCCCceeEEecc--------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---------CCeeEEEEe
Q 008393 359 DNPGYSLRTFMG--------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 421 (567)
Q Consensus 359 ~~~~~~~~~~~~--------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~ 421 (567)
.+ .. +..+.. ....|.+|...++|..+ .|+.++-|.+|+..+........ ..+.++...
T Consensus 290 ~~-~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GT-DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMW--LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TT-TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEE--EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CC-Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEE--EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 76 33 222221 23579999999887633 46677889999876654332211 134556555
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEecC--------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 422 PHLGRYLAAAAENVVSILDAETQACRLSLQG--------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+ +.+.+++.++.|..||..+++....... ....|.+++.+++|++|..|+.+ .|.+||..++. +.
T Consensus 366 ~~-g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~ 440 (795)
T 4a2l_A 366 KD-KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VE 440 (795)
T ss_dssp TT-SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EE
T ss_pred CC-CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EE
Confidence 55 5677788888899999988765433211 23579999999999855667765 89999987652 22
Q ss_pred Eee-----cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-------ccCCeeEEEEecCCCEEEEEECC
Q 008393 493 ELS-----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 493 ~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+.. .+
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC
Confidence 222 2345688888888887 555655 569999998876654332 23578999999888866644 34
Q ss_pred CcEEEc
Q 008393 561 KFVKLW 566 (567)
Q Consensus 561 g~I~iW 566 (567)
| |..|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 4 5444
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=5.2e-07 Score=86.65 Aligned_cols=219 Identities=9% Similarity=0.009 Sum_probs=139.6
Q ss_pred CeEEEEeCCCcEEEEEcCCCCce----eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CC
Q 008393 342 PRLATSSFDKTVRVWDADNPGYS----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG 414 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~----~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~ 414 (567)
.+|+.+.. +.|+.++++..... ...+......+..++|++++..++++...++.|..+++........+. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555553 46888888763221 111222234578999999888888787778999999998765544443 25
Q ss_pred eeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe-C--C-eEEEEeCCCCCCCc
Q 008393 415 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E--D-SVRVWTVGSGSEGE 489 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~--d-~I~iwd~~~~~~~~ 489 (567)
...+++.++++.++++.. .+.|.+++...................++++|++..|+.+. . . .|..+++... ...
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcE
Confidence 678899998888777765 67999999876433222322224578999999655555444 2 3 7888887532 212
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE-CCCcEEEc
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
.+ ..........+++++++..|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 22 11233457889999998888777654 69999999865544332223345566654 44555554 44667655
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.00 E-value=1.3e-07 Score=90.11 Aligned_cols=200 Identities=8% Similarity=0.033 Sum_probs=138.8
Q ss_pred ceeeeeeccCCC--CeEEEEEcCCCCeEEEEeC--CCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEe-CC
Q 008393 277 FKEANSVRASTS--KVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSS-FD 350 (567)
Q Consensus 277 ~~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~--dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s-~d 350 (567)
++.+.++. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+.+. .+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34555553 443 3579999999755555443 5899999999999998875322 223345554 44555554 57
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------eeEEEEec
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRFQP 422 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--------~~~~~~~~ 422 (567)
+.|.++|..+ .+.+.++...... ...+++++..++++. .++.|.++|..+.+.+..+.-. ...+.|.
T Consensus 86 ~~v~viD~~t-~~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRT-LSNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTT-TEEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCC-CcEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 8999999997 6666666422111 233556788888654 6889999999999888776632 3456666
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCeEEEEecCC-------------CCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC
Q 008393 423 HLGRYLAAAA-ENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 423 ~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h-------------~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~ 485 (567)
+ +.+++... ++.|.+.|..+++.+..+... ....+.|+|+|+++.|++++.. .|.+.++...
T Consensus 161 d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 56666664 789999999999998887632 1356899999999877777655 8888887543
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=2.2e-06 Score=95.93 Aligned_cols=263 Identities=8% Similarity=0.049 Sum_probs=176.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|.++...++|.+.+ |+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 46799999999987655 4444 688999887765443221 235799999998885 5556666669999876
Q ss_pred CCCceeEEecc-------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----------CCeeEEEEe
Q 008393 360 NPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----------GGTAQMRFQ 421 (567)
Q Consensus 360 ~~~~~~~~~~~-------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----------~~~~~~~~~ 421 (567)
+.. +..+.. ....|.++...+++..+ .|+.++-|..||..++....... ..+.++...
T Consensus 339 ~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW--iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW--IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEE--EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred ccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEE--EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 522 222221 24569999998887633 47777789999998776544321 234566666
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEec----CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEee--
Q 008393 422 PHLGRYLAAAAENVVSILDAETQACRLSLQ----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-- 495 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~----~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~-- 495 (567)
.++..+.+++.++.|.+||..+++...... .....|.++...++|.+.+... +.|.+||..++ . +..+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~-~~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---S-FTTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---E-EEECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---e-EEEcccc
Confidence 665548888888889999999886554322 1345799999999888766554 67889998654 1 22221
Q ss_pred -----cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-------cccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 496 -----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-------AHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 496 -----~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
.....|.++...++|. |.+++. +.|..||..+++. .+. .....|.++...++|.+.++. ..| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence 1235688888888887 555555 6799999877665 332 234578999998888866544 344 4
Q ss_pred EEc
Q 008393 564 KLW 566 (567)
Q Consensus 564 ~iW 566 (567)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 444
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.98 E-value=2.7e-07 Score=98.79 Aligned_cols=259 Identities=11% Similarity=0.090 Sum_probs=163.4
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCeeeeeecccCcc-----------EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 299 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSSL-----------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 299 g~~lasg~~-dg~I~vwd~-~~~~~~~~l~~h~~~-----------V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
+..+++++. ++.|..+|. .+++.+..+...... ...+++ .+..|++++.|+.|..+|..+ ++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t-G~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKT-GKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCC-CCEE
Confidence 446666666 889999999 899998776532210 011222 355888888999999999998 4443
Q ss_pred EEeccCC----CcEEE-EEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEeCCe-------------------
Q 008393 366 RTFMGHS----ASVMS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGGT------------------- 415 (567)
Q Consensus 366 ~~~~~h~----~~V~~-l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~~~~------------------- 415 (567)
-.+.... ..+.+ .... +..++ .+.. ++.|+.+|..+++.+..+....
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~--~g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVA--KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEE--TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEecCCCCCccceeccCCEEE--CCEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 3322111 01111 1111 24454 4443 7999999999999988765321
Q ss_pred ----------------------eEEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecCC--C-
Q 008393 416 ----------------------AQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGH--T- 454 (567)
Q Consensus 416 ----------------------~~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h--~- 454 (567)
..+++.+..+.++++..+ +.|..+|.++++.+..+... .
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 125667777888877642 36999999999998887632 1
Q ss_pred -------CCeeEEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-------------Cce---------
Q 008393 455 -------KPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------NKF--------- 501 (567)
Q Consensus 455 -------~~V~~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-------------~~i--------- 501 (567)
.++. +....+|+ +++.++.+ .++++|..+++ .+....... .++
T Consensus 296 ~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 296 WDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp SCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred cccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCC
Confidence 1221 22224674 56777777 99999998873 333332211 111
Q ss_pred -----------------EEEEEeCCCCeEEEEEc-------------------------------------CCeEEEEEC
Q 008393 502 -----------------HSCVFHPTYPSLLVIGC-------------------------------------YQSLELWNM 527 (567)
Q Consensus 502 -----------------~~~~~sp~~~~l~~~~~-------------------------------------dg~I~iwd~ 527 (567)
..++++|+...|++... ++.|+.||+
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 23578888887777642 468999999
Q ss_pred CCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 528 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 528 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+++.+-...+...+....+...+.+|+.++.||.|+.||
T Consensus 452 ~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 452 TTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 9998773222333333333344566777889999998875
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.98 E-value=1e-07 Score=89.66 Aligned_cols=181 Identities=11% Similarity=0.080 Sum_probs=131.4
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
....+.|+ ++.++++.+.+|.|+++|+++ ++.+..+.........+++. ++.++.....++.+.+||..+.+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 34678887 355677778888999999998 55555542222222345554 567777777899999999999999999
Q ss_pred EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC--C---CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 411 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~---~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
+........+.++++.++++..++.|.++|..+.+.+.++.-. . ..++.+.|. +|++++..... .|.+.|..+
T Consensus 132 i~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 132 TRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp EECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred EeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 8865554555677888888888999999999999888777542 1 245677887 77666555445 999999988
Q ss_pred CCCCceEEEeec-------------CCCceEEEEEeCCCCeEEEEEcC
Q 008393 485 GSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 485 ~~~~~~i~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 211 G---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 211 G---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp C---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred C---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 8 44444432 22457899999998888887764
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.96 E-value=2.9e-07 Score=98.67 Aligned_cols=261 Identities=10% Similarity=0.055 Sum_probs=163.1
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCeeeeeecccCcc-----------EEEEEECCCCCe----EEEEeCCCcEEEEEcCCC
Q 008393 299 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSSL-----------ITDVRFSPSMPR----LATSSFDKTVRVWDADNP 361 (567)
Q Consensus 299 g~~lasg~~-dg~I~vwd~-~~~~~~~~l~~h~~~-----------V~~i~fsp~~~~----l~s~s~dg~I~iwd~~~~ 361 (567)
+..|++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666666 889999999 899998877643211 123455444444 888999999999999984
Q ss_pred CceeEEeccCC----CcEEE-EEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCee--------------
Q 008393 362 GYSLRTFMGHS----ASVMS-LDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTA-------------- 416 (567)
Q Consensus 362 ~~~~~~~~~h~----~~V~~-l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~-------------- 416 (567)
.. +-...... ..+.+ ..+. + ..++ .++ .++.|+.+|.++++.+..+.....
T Consensus 142 ~~-~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ET-VWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CE-EEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CE-EEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 44 33322111 01111 1112 2 3444 443 379999999999999877654211
Q ss_pred ---------------------------EEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecCC
Q 008393 417 ---------------------------QMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGH 453 (567)
Q Consensus 417 ---------------------------~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h 453 (567)
.+.+.+..+.++++..+ +.|..+|.++++.+..+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 24567788888888765 38999999999999887653
Q ss_pred CC----------CeeEEEEc-CCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-------------CCc-----
Q 008393 454 TK----------PIDSVCWD-PSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNK----- 500 (567)
Q Consensus 454 ~~----------~V~~l~~s-p~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------------~~~----- 500 (567)
.. ++. +... .+| ..++.++.+ .++++|.++++ .+...... ..+
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccc
Confidence 21 121 2222 567 567777777 99999998874 33332211 001
Q ss_pred ---------------------eEEEEEeCCCCeEEEEE---------------------------------------cCC
Q 008393 501 ---------------------FHSCVFHPTYPSLLVIG---------------------------------------CYQ 520 (567)
Q Consensus 501 ---------------------i~~~~~sp~~~~l~~~~---------------------------------------~dg 520 (567)
...++++|+..++++.. ..|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 12346777666555531 346
Q ss_pred eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 521 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 521 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 89999999998772222222222212233567788889999998875
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=3.2e-07 Score=85.57 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=135.8
Q ss_pred eeeeeecccC--ccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCceeEEeccCCC-cEEEEEEcCCCCeEEEEEeCC
Q 008393 320 KSKTNLEEHS--SLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGD 394 (567)
Q Consensus 320 ~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~li~s~~~d 394 (567)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+ ++.+..+.-... .-..+++. ++.++.....+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 444455 343 3466888986 5555666664 4899999998 565555542222 22344444 56777777789
Q ss_pred CcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-----CCeeEEEEcCCCCEE
Q 008393 395 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGELL 469 (567)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~l 469 (567)
+.+.+||..+.+.+..+........+.++++.++++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 999999999999999998665556666788888888889999999999998887776422 345667776 67666
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeec-------------CCCceEEEEEeCCCCeEEEEEcC
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+..... .|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 164 anvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 555445 9999999888 44444442 22357889999999888888765
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=5.1e-08 Score=102.19 Aligned_cols=232 Identities=15% Similarity=0.130 Sum_probs=162.1
Q ss_pred CCCeEEEEeC-CCcEEEEeCCCCeeeeeeccc-CccEEEEEE-C-CCCCeEEEEe------------------CCCcEEE
Q 008393 298 DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-SSLITDVRF-S-PSMPRLATSS------------------FDKTVRV 355 (567)
Q Consensus 298 dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~f-s-p~~~~l~s~s------------------~dg~I~i 355 (567)
||++|++... ++.|.+.|++++++...+.-. ...+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877665 457999999999988855432 345888888 5 9999999885 2457899
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-------------------------------------CcEE
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------------------------------GEIR 398 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-------------------------------------g~I~ 398 (567)
+|.++ .+.+..+.--. ....++++|+|+++++++... +.|.
T Consensus 180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99997 55555444212 346688999988887666432 2477
Q ss_pred EEECCC--Cee-eEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCe------------EEEEecCCCCCeeEE
Q 008393 399 YWSINN--GSC-TRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA------------CRLSLQGHTKPIDSV 460 (567)
Q Consensus 399 iwd~~~--~~~-~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~------------~~~~~~~h~~~V~~l 460 (567)
+.|..+ ++. +..+. .....+.++|++.+++++.. ++.|.++|+.+.+ .+..+.. ......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceE
Confidence 888887 444 44443 35678999999999888876 7899999999763 3444432 3456789
Q ss_pred EEcCCCCEEEEE-eCC-eEEEEeCCCC-------CCCceEEEeecCCCceEE-----EEEeCCCCeEEEEEcCC--eE--
Q 008393 461 CWDPSGELLASV-SED-SVRVWTVGSG-------SEGECVHELSCNGNKFHS-----CVFHPTYPSLLVIGCYQ--SL-- 522 (567)
Q Consensus 461 ~~sp~g~~l~s~-s~d-~I~iwd~~~~-------~~~~~i~~~~~~~~~i~~-----~~~sp~~~~l~~~~~dg--~I-- 522 (567)
+|+++| ++++. ..+ .|.+||+... +....+..+..+..+-.. +.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 55544 455 8999999761 123567777766543221 24589999999986532 33
Q ss_pred ---------EEEECCCCcEE
Q 008393 523 ---------ELWNMSENKTM 533 (567)
Q Consensus 523 ---------~iwd~~~~~~~ 533 (567)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766533
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.90 E-value=9.8e-07 Score=87.26 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-------------------ccCccEEEEEECCCCCeEEEEeCC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------------EHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-------------------~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
..+++|+++|++++++..++.|..|+..+++...... .....+..|++.++...|+++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 3478899999988888889999999987654432110 012357899999833456666555
Q ss_pred CcEEEEEcCCCCceeEEecc-----CCCcEEEEEEcC-CCCeEEEEEeC-----------------CCcEEEEECCCCee
Q 008393 351 KTVRVWDADNPGYSLRTFMG-----HSASVMSLDFHP-NKDDLICSCDG-----------------DGEIRYWSINNGSC 407 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~p-~~~~li~s~~~-----------------dg~I~iwd~~~~~~ 407 (567)
+.|.++|..+ +. +..+.. .......+++.+ +|. ++++... ++.|..||..+++.
T Consensus 101 ~~i~~~d~~~-g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 101 YHLSVVGSEG-GH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TEEEEECTTC-EE-CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCEEEEeCCC-CE-EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5588888764 22 222211 123578899999 875 4444322 36799999887765
Q ss_pred eEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCC---eEEEEecCCCCCeeEEEEcCCCCEEEEEeC-------
Q 008393 408 TRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE------- 474 (567)
Q Consensus 408 ~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~------- 474 (567)
..... .....++++++++.++++.. .+.|.+|++... ... .+....+ ...|+++++|+++++...
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 43322 34567899999887777654 689999998752 211 1111223 788999999997777654
Q ss_pred ---C-eEEEEeCCCCCCCceEEEeecCC----CceEEEEEeCCCCeEEEEE-cCCeEEEEECCCC
Q 008393 475 ---D-SVRVWTVGSGSEGECVHELSCNG----NKFHSCVFHPTYPSLLVIG-CYQSLELWNMSEN 530 (567)
Q Consensus 475 ---d-~I~iwd~~~~~~~~~i~~~~~~~----~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~ 530 (567)
. .|..+|.. + +.+..+.... ..+..+++ .++. |++++ ..+.|.++++...
T Consensus 256 ~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC---
T ss_pred CCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEecccc
Confidence 3 67777753 3 4444444332 34555665 3444 55544 5678888887644
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=2.4e-06 Score=83.85 Aligned_cols=231 Identities=12% Similarity=0.043 Sum_probs=141.1
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-CC-c
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DG-E 396 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-dg-~ 396 (567)
.+.+..+... .....++|+++++++++-..++.|..||.+. . ....+ .....+..+++.+++. ++++... ++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~-~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-c-eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3444444332 4577899999998767766788999999875 3 22222 2345788999999987 4444433 22 4
Q ss_pred EEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeE-EEEec---------CCCCCeeEEE
Q 008393 397 IRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC-RLSLQ---------GHTKPIDSVC 461 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~-~~~~~---------~h~~~V~~l~ 461 (567)
|..+|..+++....... ....++..+ ++.++++. .++.|+++|..+++. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 77778888776543321 122334433 45555555 488999999886532 21111 111234555
Q ss_pred EcCCCCEEEEEeCC--eEEEEeCCC-CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE---e
Q 008393 462 WDPSGELLASVSED--SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT---L 535 (567)
Q Consensus 462 ~sp~g~~l~s~s~d--~I~iwd~~~-~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~---~ 535 (567)
++++++|+.+... .|.+|++.. +.. .....+.. ......++++++|+++++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 7888877766654 899999874 221 11111111 1334567999999865555567899999976 55432 2
Q ss_pred ccccCCeeEEEEe---cCCCEEEEEECC
Q 008393 536 TAHEGLIAALAVS---TETGYVASASHD 560 (567)
Q Consensus 536 ~~h~~~V~~l~~s---pdg~~l~s~s~D 560 (567)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2223568999998 888777666543
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=1.5e-06 Score=85.93 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=140.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--------------------CCCcEEEEEEcCCCCeEEEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--------------------HSASVMSLDFHPNKDDLICS 390 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--------------------h~~~V~~l~~~p~~~~li~s 390 (567)
...+++|.+++++++++..++.|..||..+... ..+.. ....+..|++.+++..++ .
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-I 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-E
Confidence 356788999998888888899999998875322 22210 113578999997334555 3
Q ss_pred EeCCCcEEEEECCCCeeeEEE---e----CCeeEEEEec-CCCEEEEEEC-----------------CCeEEEEECCCCe
Q 008393 391 CDGDGEIRYWSINNGSCTRVF---K----GGTAQMRFQP-HLGRYLAAAA-----------------ENVVSILDAETQA 445 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~~~~~---~----~~~~~~~~~~-~~~~l~~~~~-----------------dg~I~i~d~~~~~ 445 (567)
+...+.|..+|..++...... . .....+++.+ ++..+++-.. ++.|..||..+++
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 444555888987765432211 1 1246688888 7654444322 3679999988776
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-----
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----- 518 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~----- 518 (567)
....... ......|+|+++|++|+.+. .. .|.+|++....... ...+..... ...+++.++|+++++...
T Consensus 177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 5433221 23456799999999766664 44 89999987532111 111111223 778899999985555544
Q ss_pred -----CCeEEEEECCCCcEE-Eeccc----cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 519 -----YQSLELWNMSENKTM-TLTAH----EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 519 -----dg~I~iwd~~~~~~~-~~~~h----~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++...++.|.++
T Consensus 254 ~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp TTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred ccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 3678888875 4444 33322 245777776 456555555556667665
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=4.5e-06 Score=93.16 Aligned_cols=270 Identities=8% Similarity=-0.030 Sum_probs=173.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--------------ccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------------EHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--------------~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
...|.++....+|.+ ..|+..+-|.++|..+.+...... .....|.++....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 467999999988864 456665678889987665432111 2345799999988875 556666666
Q ss_pred EEEEEcCCCCceeEEec----------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eCCee
Q 008393 353 VRVWDADNPGYSLRTFM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTA 416 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~----------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~~~~ 416 (567)
|..|+...... ..+. -....|.++...+++..+ .|+.++-|.+||..++...... ...+.
T Consensus 335 l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPTF--HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW--IGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp EEEECSSCCSC--EEEC----CCCSSCCSSSCEEEEEECTTSCEE--EEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred EEEeCCCCCcc--eeeccCccccccCCCCCcceEEEEEcCCCCEE--EEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 88998875322 2221 123569999998876533 4666677999998765433211 12344
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~ 494 (567)
++....+ +.+.+++.++.|..||..+++...... .....|.++...++|.+.+. +.+.|.+||..++.. ..+...
T Consensus 411 ~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~~~~~~~~~~-~~~~~~ 487 (781)
T 3v9f_A 411 CSLKDSE-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAGVFVIDLASKKV-IHHYDT 487 (781)
T ss_dssp EEEECTT-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTEEEEEESSSSSC-CEEECT
T ss_pred EEEECCC-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCceEEEeCCCCeE-EecccC
Confidence 5555544 567778877889999998876543221 13467999999888876554 447899999876422 111111
Q ss_pred e---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc----ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 495 S---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. .....|.++...++|. |.+++.++.|..||..+++...+.. ....|.++...++|.+.++ +.+|.|..||
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 1 1135688888888887 6667765668889988776654432 2346889998888876654 4466546654
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=2.9e-07 Score=86.63 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=130.6
Q ss_pred ceeeeeeccCCCC--eEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCeeeeeecccCcc-EEEEEECCCCCeEEEEe-CC
Q 008393 277 FKEANSVRASTSK--VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSS-FD 350 (567)
Q Consensus 277 ~~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~dg--~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp~~~~l~s~s-~d 350 (567)
++.+.++ .|... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.... -..+++ ++..|+.+. .+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeC
Confidence 3455555 34433 4678998 677777777766 8999999999999888643321 123444 345555554 48
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------eeEEEEec
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRFQP 422 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--------~~~~~~~~ 422 (567)
+.+.+||..+ .+.+.++.... .-..+ ++++..++++- .++.|.++|..+.+.+..+.-. .+.+.|.
T Consensus 107 ~~v~v~D~~t-~~~~~ti~~~~-eG~gl--t~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRN-LRQVRSFNYDG-EGWGL--THNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTT-CCEEEEEECSS-CCCCE--EECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECcc-CcEEEEEECCC-CceEE--ecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 8999999998 66666665322 21233 35677777554 4788999999999888776531 2335565
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCeEEEEecCC------------CCCeeEEEEcCCCCEEEEEeCC
Q 008393 423 HLGRYLAAAA-ENVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 423 ~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h------------~~~V~~l~~sp~g~~l~s~s~d 475 (567)
++.+++... ++.|.+.|.++++.+..+... ....+.|||+|+++.|+..+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 456766664 789999999999998887642 1356889999999988888876
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=1.2e-05 Score=78.66 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=142.6
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~i 355 (567)
+.+..+... ....+++|+++|+++++-..++.|..||.+.. ....+. .......+++.++++++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444332 45678999999997777767899999998753 333332 234688999999998665554332 4666
Q ss_pred EEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEEe---------C---CeeEEEEe
Q 008393 356 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---------G---GTAQMRFQ 421 (567)
Q Consensus 356 wd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~~---------~---~~~~~~~~ 421 (567)
+|..+ +....... ........++..+. ..++++...++.|+++|...+.. +.... . ....+ +
T Consensus 100 ~d~~~-g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 100 LVKSD-GTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EECTT-SCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EcCCC-CeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67665 33222111 12233455555544 44555555688999999876532 11110 0 12333 7
Q ss_pred cCCCEEEEEEC-CCeEEEEECCC-CeE--EEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 422 PHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 422 ~~~~~l~~~~~-dg~I~i~d~~~-~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
++++.++++.. .+.|..||+.. ++. ...+.. ......|+++++|+++++.... .|.+||.. +. ...+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeeccc
Confidence 88877777665 67999999874 321 111111 1345678999999877666655 89999974 31 111223333
Q ss_pred CCCceEEEEEe---CCCCeEEEEEcCC
Q 008393 497 NGNKFHSCVFH---PTYPSLLVIGCYQ 520 (567)
Q Consensus 497 ~~~~i~~~~~s---p~~~~l~~~~~dg 520 (567)
.....++++|. +++..|+++...+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34568899998 8888888877643
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.84 E-value=1.3e-05 Score=80.28 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=152.6
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCce
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS 364 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~ 364 (567)
+....+|.+..+++ +|+.+ ....|+..+++.......+.. ...+..++|++.+..|+.+. ..+.|..++++.. ..
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~ 107 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NV 107 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC
T ss_pred CCCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCC-Cc
Confidence 34445677776644 44444 345688888876555444443 34588999998766666554 5788999999863 32
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC-C-CeEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E-NVVSIL 439 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-d-g~I~i~ 439 (567)
...+.........+++.+.+..++++-...+.|.+.++........+.. ....+++.|.++.++.+.. . +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 2233323345678999887778887877788999999886554443432 4577899998888777765 3 789999
Q ss_pred ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 440 d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
++........+...-.....|+|++++..|+.+... .|..+|+.... ... .+.........+++. .+ .|+.+.
T Consensus 188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~--~~~~~~~~P~giav~-~~-~ly~td 262 (349)
T 3v64_C 188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKA--VISQGLPHPFAITVF-ED-SLYWTD 262 (349)
T ss_dssp ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE--EECSSCSSEEEEEEE-TT-EEEEEE
T ss_pred eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEE--EEeCCCCCceEEEEE-CC-EEEEec
Confidence 887643332222234457899999877777776654 89999986432 121 222233456677773 33 455554
Q ss_pred -cCCeEEEEECCCCc
Q 008393 518 -CYQSLELWNMSENK 531 (567)
Q Consensus 518 -~dg~I~iwd~~~~~ 531 (567)
..+.|..++..+++
T Consensus 263 ~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 263 WHTKSINSANKFTGK 277 (349)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEccCCC
Confidence 45688888855554
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.83 E-value=9.3e-08 Score=104.57 Aligned_cols=262 Identities=10% Similarity=0.055 Sum_probs=152.9
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------cEEEEeCCCCeeee--eec-ccCccEEEEEECCCCCeEEEEeC-CCcEEE
Q 008393 292 CCHFSS-DGKLLATGGHDK-----------KAVLWHTDTLKSKT--NLE-EHSSLITDVRFSPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg-----------~I~vwd~~~~~~~~--~l~-~h~~~V~~i~fsp~~~~l~s~s~-dg~I~i 355 (567)
++++.+ +|++++.|+.+. .+.+||..+++... .+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 889999987643 58899998765432 222 23334456788889999999984 457999
Q ss_pred EEcCCCCceeEEecc-C-CCcEEEEEEcCCCCeEEEEEe-CC-----CcEEEEECCCCeeeEEEe-------CCeeEEEE
Q 008393 356 WDADNPGYSLRTFMG-H-SASVMSLDFHPNKDDLICSCD-GD-----GEIRYWSINNGSCTRVFK-------GGTAQMRF 420 (567)
Q Consensus 356 wd~~~~~~~~~~~~~-h-~~~V~~l~~~p~~~~li~s~~-~d-----g~I~iwd~~~~~~~~~~~-------~~~~~~~~ 420 (567)
||..+... ..+.. + ...-.++++.+++. +++.|+ .+ ..+.+||..+.+....-. .......+
T Consensus 270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEGGGTEE--EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred ecCcCCce--eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 99986322 21111 1 11123455566665 555666 34 579999999877544310 00000111
Q ss_pred ecCCCEEEEEEC---------CCeEEEEECCCCeEEEEecCCCC---------CeeEEEEc-CCCCEEEEEeCC------
Q 008393 421 QPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTK---------PIDSVCWD-PSGELLASVSED------ 475 (567)
Q Consensus 421 ~~~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~---------~V~~l~~s-p~g~~l~s~s~d------ 475 (567)
..++..++.++. ...+..||..+.........+.. .-.++.|. .+++++++|+.+
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 223333444443 34678899887754433322211 22344454 377888887731
Q ss_pred ------eEEEEeCCCCCCCceEEEe--ecC-CCceEEEEEeCCCCeEEEEEcC-----------CeEEEEECCCCcEEEe
Q 008393 476 ------SVRVWTVGSGSEGECVHEL--SCN-GNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTL 535 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~i~~~--~~~-~~~i~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~~~ 535 (567)
.|.+||..+. ...... ... .....++++.++++.+++|+.+ ..+.+||..+.+...+
T Consensus 427 ~~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp CCCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred cCCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 4677777654 221111 111 2223455677899988888754 4689999988765543
Q ss_pred cc---ccCCeeEEEEecCCCEEEEEEC
Q 008393 536 TA---HEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 536 ~~---h~~~V~~l~~spdg~~l~s~s~ 559 (567)
.. ......+..+.+++++++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 21 1222334556789999999985
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=3.1e-05 Score=76.22 Aligned_cols=226 Identities=8% Similarity=-0.043 Sum_probs=145.0
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCC---CceeEEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNP---GYSLRTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 376 (567)
+|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+. ..+.|..++++.. ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 4678999998776655544 345578999998766665554 5688999998751 111222322334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECC--CeEEEEECCCCeEEEEec
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE--NVVSILDAETQACRLSLQ 451 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~ 451 (567)
.|++.+.+..++++-...+.|.++++........+. .....+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987777788777778999999988654443343 245778999988888877763 689999886543332223
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
..-.....|+|++++..|+.+... .|..+|+... ....+............+++. .+ .|+++. ..+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCC
Confidence 334567899999987777766654 8999998742 223332221223345677775 33 455554 45689999876
Q ss_pred CCc
Q 008393 529 ENK 531 (567)
Q Consensus 529 ~~~ 531 (567)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 554
No 260
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=6.5e-07 Score=97.84 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=155.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.|+.|..+|..+|+.+..+.... ..+.+ ..+. ++ .++++.. +|.|+.||..+ ++.+-.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADT-GKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTT-CCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCC-CcEEEE
Confidence 4578888889999999999999988776421 11111 0111 33 5555543 58999999998 444433
Q ss_pred ecc---CC----------------------------CcEEEEEEcCCCCeEEEEEeCCC-------------------cE
Q 008393 368 FMG---HS----------------------------ASVMSLDFHPNKDDLICSCDGDG-------------------EI 397 (567)
Q Consensus 368 ~~~---h~----------------------------~~V~~l~~~p~~~~li~s~~~dg-------------------~I 397 (567)
+.. .. .....+++.++.+ +++.+..++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 321 00 0112467877765 444666555 49
Q ss_pred EEEECCCCeeeEEEeCC------------eeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCC-------
Q 008393 398 RYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTK------- 455 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~------- 455 (567)
..+|.++++.+..+... .....+..++. .+++++.+|.++++|.++++.+..+.....
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 99999999998887642 11122233443 477778899999999999998854432110
Q ss_pred -----C------------------------eeEEEEcCCCCEEEEEe---------------------------------
Q 008393 456 -----P------------------------IDSVCWDPSGELLASVS--------------------------------- 473 (567)
Q Consensus 456 -----~------------------------V~~l~~sp~g~~l~s~s--------------------------------- 473 (567)
+ -..++++|+..+++...
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0 01267888776665421
Q ss_pred ---CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCC-eeEEEE
Q 008393 474 ---ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAV 547 (567)
Q Consensus 474 ---~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~ 547 (567)
.+ .|..||+.++ +.+....... ......+...+.++++++.++.|++||.++++.+ .+....+. -.-+.+
T Consensus 433 ~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQ---KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp GGGCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCccceEEEEeCCCC---cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 22 6889999887 4444444322 2333345567888999999999999999999987 33332221 123444
Q ss_pred ecCCC-EEEEE
Q 008393 548 STETG-YVASA 557 (567)
Q Consensus 548 spdg~-~l~s~ 557 (567)
..+|+ |++.+
T Consensus 509 ~~~G~~yva~~ 519 (668)
T 1kv9_A 509 ELAGRQYVAIM 519 (668)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEEE
Confidence 55676 44443
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.82 E-value=1.6e-06 Score=92.90 Aligned_cols=260 Identities=9% Similarity=0.025 Sum_probs=158.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCccE---------EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI---------TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V---------~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
..+++++.++.|..+|..+|+.+..+....... ..+++ .+..|++++.|+.|..+|..++ +.+-.+..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG-~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTG-KVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSC-CEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCC-CEEeeecC
Confidence 355555554459999999999988776432210 11222 3457888899999999999984 44333322
Q ss_pred CC----CcEE-EEEEcC---CCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCe---------------------
Q 008393 371 HS----ASVM-SLDFHP---NKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGT--------------------- 415 (567)
Q Consensus 371 h~----~~V~-~l~~~p---~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~--------------------- 415 (567)
.. ..+. ...+.. ++..+++.+. .++.|+.+|..+++.+.......
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 11 0111 111111 2232444544 37899999999999887654310
Q ss_pred -----------------------eEEEEecCCCEEEEEEC--------------------C----CeEEEEECCCCeEEE
Q 008393 416 -----------------------AQMRFQPHLGRYLAAAA--------------------E----NVVSILDAETQACRL 448 (567)
Q Consensus 416 -----------------------~~~~~~~~~~~l~~~~~--------------------d----g~I~i~d~~~~~~~~ 448 (567)
..+++.+..+.++++.. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 12456677788887774 2 589999999999998
Q ss_pred EecC--CC--------CCeeEEEEc-CCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-------------C-
Q 008393 449 SLQG--HT--------KPIDSVCWD-PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------N- 499 (567)
Q Consensus 449 ~~~~--h~--------~~V~~l~~s-p~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-------------~- 499 (567)
.+.. |. .++. +... .+|+ +|+.++.+ .++++|..+++ .+..+.... .
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCE
Confidence 8753 32 1221 1221 4674 77778888 99999998874 333222211 0
Q ss_pred -------------------c------------eEEEEEeCCCCeEEEEE-------------------------------
Q 008393 500 -------------------K------------FHSCVFHPTYPSLLVIG------------------------------- 517 (567)
Q Consensus 500 -------------------~------------i~~~~~sp~~~~l~~~~------------------------------- 517 (567)
. ...++++|+...+++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0 01346677666666543
Q ss_pred --cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 518 --CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 518 --~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|.|+.||+.+++.+ ... +..++..-.+...+.+|+.++.||.|+.||
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2578999999999887 332 222332222233567888899999998875
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=2.1e-06 Score=91.89 Aligned_cols=250 Identities=10% Similarity=0.048 Sum_probs=152.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~~~ 367 (567)
+..+++++.|+.|..+|..+++.+....... ..+.+ .... ++ .+++++. ++.|+.+|..+ ++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKT-GELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTT-CCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCC-CcEEEE
Confidence 4577888889999999999999987765321 01211 1111 33 5566554 78999999998 444333
Q ss_pred eccCCCc-------------------------------------E-EEEEEcCCCCeEEEEEeCC---------------
Q 008393 368 FMGHSAS-------------------------------------V-MSLDFHPNKDDLICSCDGD--------------- 394 (567)
Q Consensus 368 ~~~h~~~-------------------------------------V-~~l~~~p~~~~li~s~~~d--------------- 394 (567)
+...... + ..+++.+....++ .+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCccCCCcee
Confidence 3211100 0 1355666655444 44321
Q ss_pred -CcEEEEECCCCeeeEEEeCC---------e-eEEEE--ecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCC----
Q 008393 395 -GEIRYWSINNGSCTRVFKGG---------T-AQMRF--QPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT---- 454 (567)
Q Consensus 395 -g~I~iwd~~~~~~~~~~~~~---------~-~~~~~--~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---- 454 (567)
+.|..+|.++++.+..+... . ..+.+ ..++. .++++..+|.++++|.++++.+..+....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 35999999999998877532 1 11222 23443 35567778999999999999887765321
Q ss_pred ---------CCe--------------------------eEEEEcCCCCEEEEEe--------------------------
Q 008393 455 ---------KPI--------------------------DSVCWDPSGELLASVS-------------------------- 473 (567)
Q Consensus 455 ---------~~V--------------------------~~l~~sp~g~~l~s~s-------------------------- 473 (567)
.++ ..++++|+..+|+...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 2467888877776653
Q ss_pred -----------CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc-
Q 008393 474 -----------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE- 539 (567)
Q Consensus 474 -----------~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~- 539 (567)
.+ .|..||+.++ +.+..+.... .+....+...+..+++++.|+.|+.||.++++.+ .+....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccCccccCCCCCCeEEEEECCCC---CEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 23 7888888877 3444443322 2222233445667888999999999999999988 333221
Q ss_pred CCeeEEEEecCCCEEEE
Q 008393 540 GLIAALAVSTETGYVAS 556 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s 556 (567)
..-.-+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 11222445577765443
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.3e-05 Score=89.33 Aligned_cols=266 Identities=9% Similarity=0.038 Sum_probs=169.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|.++...++|.+.+. +.+ -|.+||..+++....... ....|.++....++. |..|+..+-|.++|..
T Consensus 210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 357999999998876654 444 689999877655432211 245699999888775 5556664458899987
Q ss_pred CCCceeEEe-------------ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe------------CC
Q 008393 360 NPGYSLRTF-------------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------GG 414 (567)
Q Consensus 360 ~~~~~~~~~-------------~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~------------~~ 414 (567)
+........ .-....|.+|....+|..+ .|+.++-|..|+........... ..
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW--IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE--EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE--EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 632111110 0134579999998887633 46667889999987665433211 12
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe---cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
+.++....+ +.+.+++.++.|.+||..++...... ......|.+++..++|.+.+ |+.+ .|..||..++ .
T Consensus 365 v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~----~ 438 (781)
T 3v9f_A 365 VSSVCDDGQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK----K 438 (781)
T ss_dssp EEEEEECTT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC----E
T ss_pred eEEEEEcCC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC----c
Confidence 445555554 56777887788999998776443211 12346789999888887665 5665 8999998654 2
Q ss_pred EEEee---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-c-----cCCeeEEEEecCCCEEEEEECCC
Q 008393 491 VHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-H-----EGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 491 i~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-h-----~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
+..+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+|
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence 22222 2345688888888776 666666 679999988776543321 1 35789999988887665443344
Q ss_pred cEEEc
Q 008393 562 FVKLW 566 (567)
Q Consensus 562 ~I~iW 566 (567)
|..|
T Consensus 517 -l~~~ 520 (781)
T 3v9f_A 517 -VGIY 520 (781)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 4444
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.75 E-value=1.6e-05 Score=80.68 Aligned_cols=235 Identities=10% Similarity=-0.002 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~ 367 (567)
...|.+..+++ +|+.+ ....|+.+++........+.. ...+..++|.+.+..|+.+ ...+.|..++++. ......
T Consensus 78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~ 153 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEV 153 (386)
T ss_dssp SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEEE
T ss_pred CCeECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEEE
Confidence 34466666643 44444 346788898876655444443 3458899999866666555 4577899999986 332233
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC-C-CeEEEEECC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E-NVVSILDAE 442 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-d-g~I~i~d~~ 442 (567)
+.........|++.+.+..++++-...+.|.+.++........+.. ....+++.|.++.++.+.. . +.|..+++.
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3333345577889887778887877788999999876554444432 4577899998888877765 3 689999987
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cC
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CY 519 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~d 519 (567)
...........-.....|+|++++..|+.+... .|..+|+.... .. ..+.........+++. .+ .|+.+. ..
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~--~~~~~~~~~P~giav~-~~-~ly~td~~~ 308 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RK--AVISQGLPHPFAITVF-ED-SLYWTDWHT 308 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CE--EEECSSCSSEEEEEEE-TT-EEEEEETTT
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eE--EEEECCCCCceEEEEE-CC-EEEEeeCCC
Confidence 654433333334557899999877777766654 89999986432 11 1222233456677773 33 455444 45
Q ss_pred CeEEEEECCCCcE
Q 008393 520 QSLELWNMSENKT 532 (567)
Q Consensus 520 g~I~iwd~~~~~~ 532 (567)
+.|..++..+++.
T Consensus 309 ~~V~~~~~~~G~~ 321 (386)
T 3v65_B 309 KSINSANKFTGKN 321 (386)
T ss_dssp TEEEEEETTTCCS
T ss_pred CeEEEEECCCCcc
Confidence 6899998655543
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.74 E-value=3.1e-06 Score=78.94 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=129.2
Q ss_pred cceeeeeeccCCC--CeEEEEEcCCCCeEEEEeCC--CcEEEEeCCCCeeeeeecccCcc-EEEEEECCCCCeEEE-EeC
Q 008393 276 SFKEANSVRASTS--KVICCHFSSDGKLLATGGHD--KKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLAT-SSF 349 (567)
Q Consensus 276 ~~~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~d--g~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp~~~~l~s-~s~ 349 (567)
.++.+.++ .|.. -+-.+.|+. +.++.+.+.+ ..|+++|+.+++.+..+.-.... -..+++. +..|+. .-.
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~ 83 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR 83 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee
Confidence 34455555 4543 355899986 5566666665 48999999999999887643321 1233443 344444 456
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEe
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQ 421 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~ 421 (567)
++.+.+||..+ ...+.++.... .-..++ +++..|+++- .++.|.++|..+.+.+..+.- ..+.+.+.
T Consensus 84 ~~~v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 84 NHEGFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSEEEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 88999999998 66677666432 223444 5677777664 588999999999988877653 22334444
Q ss_pred cCCCEEEEEE-CCCeEEEEECCCCeEEEEecCC-------------CCCeeEEEEcCCCCEEEEEeCC
Q 008393 422 PHLGRYLAAA-AENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 422 ~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h-------------~~~V~~l~~sp~g~~l~s~s~d 475 (567)
++.+++.. .++.|.+.|.++++.+..+... ....+.|+|+|+++.|+..+..
T Consensus 159 --~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 --NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 56677666 4789999999999998877521 1356889999988888887766
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=1.5e-06 Score=81.75 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=121.1
Q ss_pred CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eCCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEe
Q 008393 373 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL 450 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~ 450 (567)
.....|.|+ ++.|+.+.+.+|.|+++|+++++.+..+ .......-+.+.++.++.... ++.+.+||..+.+.+.++
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 345788887 4678889999999999999999988776 222233334445666666654 789999999999999988
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--C---CceEEEEEeCCCCeEEEEE-cCCeEE
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--G---NKFHSCVFHPTYPSLLVIG-CYQSLE 523 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--~---~~i~~~~~sp~~~~l~~~~-~dg~I~ 523 (567)
.... .-..++ ++++.|+.+..+ .|.++|..+.+ .+..+... . ..++.+.|. +|. |++.. ..+.|.
T Consensus 133 ~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEE
Confidence 7532 224555 456767666645 99999998874 34333322 1 234566666 664 66655 467999
Q ss_pred EEECCCCcEEEecc--------------ccCCeeEEEEecCCCEEEEEE
Q 008393 524 LWNMSENKTMTLTA--------------HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 524 iwd~~~~~~~~~~~--------------h~~~V~~l~~spdg~~l~s~s 558 (567)
+.|..+++...... -....+.|+|+|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999998772211 113578999999876666555
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=3.8e-06 Score=90.00 Aligned_cols=251 Identities=12% Similarity=0.079 Sum_probs=150.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCc----cEE-E-EEECC--CCC-eEEEEe------CCCcEEEEEcCCCCc
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----LIT-D-VRFSP--SMP-RLATSS------FDKTVRVWDADNPGY 363 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~----~V~-~-i~fsp--~~~-~l~s~s------~dg~I~iwd~~~~~~ 363 (567)
+..+++++.|+.|..+|.++|+.+........ .+. . +.... +++ .|++++ .++.|+.+|..++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~- 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE- 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC-
Confidence 45777888899999999999999877653221 111 1 11111 233 555654 37889999998844
Q ss_pred eeEEeccCCCcE-----------------------------------------EEEEEcCCCCeEEEEEe----------
Q 008393 364 SLRTFMGHSASV-----------------------------------------MSLDFHPNKDDLICSCD---------- 392 (567)
Q Consensus 364 ~~~~~~~h~~~V-----------------------------------------~~l~~~p~~~~li~s~~---------- 392 (567)
.+-........+ ..+++.+....+++..+
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 332222110000 12456666555553332
Q ss_pred --C-------C----CcEEEEECCCCeeeEEEeCC----------eeEEEEe---cCCC---EEEEEECCCeEEEEECCC
Q 008393 393 --G-------D----GEIRYWSINNGSCTRVFKGG----------TAQMRFQ---PHLG---RYLAAAAENVVSILDAET 443 (567)
Q Consensus 393 --~-------d----g~I~iwd~~~~~~~~~~~~~----------~~~~~~~---~~~~---~l~~~~~dg~I~i~d~~~ 443 (567)
. | +.|..+|..+++.+..+... ...+.+. .++. .++.++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 68999999999999887531 1122222 3453 566777899999999999
Q ss_pred CeEEEEecCCCC-------------C--------------------------------eeEEEEcCCCCEEEEEe-----
Q 008393 444 QACRLSLQGHTK-------------P--------------------------------IDSVCWDPSGELLASVS----- 473 (567)
Q Consensus 444 ~~~~~~~~~h~~-------------~--------------------------------V~~l~~sp~g~~l~s~s----- 473 (567)
++.+..+..... + -..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998877654320 0 01346677655555432
Q ss_pred ----------------------------CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 474 ----------------------------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 474 ----------------------------~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
.+ .|..||+.++ +.+....... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 13 6888898877 3443333221 2211122335677888999999999
Q ss_pred EECCCCcEE-EeccccCCe-eEEEEecCCCEE
Q 008393 525 WNMSENKTM-TLTAHEGLI-AALAVSTETGYV 554 (567)
Q Consensus 525 wd~~~~~~~-~~~~h~~~V-~~l~~spdg~~l 554 (567)
||.++++.+ .+....+.+ .-+.|..+|+.+
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 999999988 443322221 236666788743
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=5.1e-06 Score=88.98 Aligned_cols=248 Identities=11% Similarity=0.066 Sum_probs=148.3
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEe------CCCcEEEEEcCCCCceeEEecc
Q 008393 302 LATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 302 lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
|++++.|+.|..+|..+|+.+....... ..+.+ ..+. ++ .|++++ .+|.|+.+|..++....+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999987765322 01211 1111 34 555554 3899999999984433332221
Q ss_pred CCC------------------------------------cE-EEEEEcCCCCeEEEEEeCC----------------CcE
Q 008393 371 HSA------------------------------------SV-MSLDFHPNKDDLICSCDGD----------------GEI 397 (567)
Q Consensus 371 h~~------------------------------------~V-~~l~~~p~~~~li~s~~~d----------------g~I 397 (567)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 00 1345666655444 55444 489
Q ss_pred EEEECCCCeeeEEEeCCe----------eEEEEe---cCC---CEEEEEECCCeEEEEECCCCeEEEEecCCC-------
Q 008393 398 RYWSINNGSCTRVFKGGT----------AQMRFQ---PHL---GRYLAAAAENVVSILDAETQACRLSLQGHT------- 454 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~----------~~~~~~---~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------- 454 (567)
..+|.++++.+..+.... ..+.+. .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999988776421 112222 345 245557789999999999999887664211
Q ss_pred ------CCe--------------------------eEEEEcCCCCEEEEEe-----------------------------
Q 008393 455 ------KPI--------------------------DSVCWDPSGELLASVS----------------------------- 473 (567)
Q Consensus 455 ------~~V--------------------------~~l~~sp~g~~l~s~s----------------------------- 473 (567)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 011 2456777766665532
Q ss_pred ----------CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccC-
Q 008393 474 ----------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG- 540 (567)
Q Consensus 474 ----------~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~- 540 (567)
.. .|..||+.++ +.+...... .+...-.+...+..+++++.|+.|+.||.++++.+ .+....+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 22 6777777776 333333221 11111123345677888999999999999999988 3332222
Q ss_pred CeeEEEEecCCCE-EEE
Q 008393 541 LIAALAVSTETGY-VAS 556 (567)
Q Consensus 541 ~V~~l~~spdg~~-l~s 556 (567)
...-+.|..+|+. |++
T Consensus 517 ~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp CSCCEEEEETTEEEEEE
T ss_pred EeccEEEEeCCEEEEEE
Confidence 2223556667764 443
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=9.9e-05 Score=75.20 Aligned_cols=226 Identities=8% Similarity=-0.050 Sum_probs=148.5
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCC---ceeEEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG---YSLRTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 376 (567)
+|+.+. ...|+..+++.......+. ....+..|+|++.+..|+.+. ..+.|+.++++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 5789999988665544443 455688999998766666554 56789999987521 12233333456688
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEec
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 451 (567)
.|++.+.+..|+++-...+.|.+.++........+.. ....+++.|.++.++.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 9999987777887877788999999987665555443 3577899998888887764 3789999987654443344
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
..-.....|++++++..|+.+... .|..+|+... ....+............+++ ++..|+... ..+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence 344567899999988877777654 8999998643 22223222122234456666 334455554 44688888866
Q ss_pred CCc
Q 008393 529 ENK 531 (567)
Q Consensus 529 ~~~ 531 (567)
+++
T Consensus 320 ~G~ 322 (400)
T 3p5b_L 320 TGS 322 (400)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.63 E-value=2.3e-06 Score=94.95 Aligned_cols=242 Identities=9% Similarity=0.066 Sum_probs=136.0
Q ss_pred cCCC-CeEEEEEc-CCCCeEEEEeC-CC----cEEEEeCCCC-eeee-eecccCccEEEEEECCCCCeEEEEeCC-----
Q 008393 285 ASTS-KVICCHFS-SDGKLLATGGH-DK----KAVLWHTDTL-KSKT-NLEEHSSLITDVRFSPSMPRLATSSFD----- 350 (567)
Q Consensus 285 ~h~~-~V~~l~~s-~dg~~lasg~~-dg----~I~vwd~~~~-~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~d----- 350 (567)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....+.|+||++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 3443 67789999 99999886543 22 5999999998 6321 121 123468899999988877665
Q ss_pred CcEEEEEcCCCCce-eEEec-cCCCcEEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCe-ee--EEEeCCeeEEEEecC
Q 008393 351 KTVRVWDADNPGYS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGS-CT--RVFKGGTAQMRFQPH 423 (567)
Q Consensus 351 g~I~iwd~~~~~~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~~~--dg~I~iwd~~~~~-~~--~~~~~~~~~~~~~~~ 423 (567)
..|+++++.+.... ...+. ........+.|+|+|+.|+++... ...|+++|+.++. .. ..+........++++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 25888888763221 22222 233456788999999988877643 3468889998752 12 333221111223333
Q ss_pred ---CCEEEEEECC-----CeEEEEECCCCeEEEE-ecCCCC--CeeEEEEcCCCCEEEEEeCC---eEEEEeC-------
Q 008393 424 ---LGRYLAAAAE-----NVVSILDAETQACRLS-LQGHTK--PIDSVCWDPSGELLASVSED---SVRVWTV------- 482 (567)
Q Consensus 424 ---~~~l~~~~~d-----g~I~i~d~~~~~~~~~-~~~h~~--~V~~l~~sp~g~~l~s~s~d---~I~iwd~------- 482 (567)
++.++..+.. ..|..+|+.+...... +..+.. .+..+.+. .+.++++...+ .|.++++
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVF 405 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccc
Confidence 6777666553 3788888875211112 222333 34555554 23344455544 4777776
Q ss_pred CCCCCCceEEEeecCC-CceEEEEE----eCCCCeEE-EEEcC---CeEEEEECCCCcEE
Q 008393 483 GSGSEGECVHELSCNG-NKFHSCVF----HPTYPSLL-VIGCY---QSLELWNMSENKTM 533 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~-~~i~~~~~----sp~~~~l~-~~~~d---g~I~iwd~~~~~~~ 533 (567)
..+. .+..+.... ..+..+.+ ++++..++ +.+.. ..++.+|+.+++..
T Consensus 406 ~~g~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 406 KAGT---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp CTTT---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred cCCc---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 2221 022222111 12223322 34655444 33333 37888898877644
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.63 E-value=8.8e-05 Score=70.02 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=134.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+.+.+-.+.+..++|+|+++.| ++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4566666789999999986655 557778899999998 888877642 2245788899988877677667788999998
Q ss_pred CCCCc--eeEEec------cCCCcEEEEEEcCCCCeEEEEEeCCC-cEEEEEC-CCCeeeEEEe----------CCeeEE
Q 008393 359 DNPGY--SLRTFM------GHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSI-NNGSCTRVFK----------GGTAQM 418 (567)
Q Consensus 359 ~~~~~--~~~~~~------~h~~~V~~l~~~p~~~~li~s~~~dg-~I~iwd~-~~~~~~~~~~----------~~~~~~ 418 (567)
..... .+.... ........|+|.|.++.++++.-.+. .|+.|+- .....+..+. .....+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76443 122221 23455789999999888886665554 4555551 1111222221 246789
Q ss_pred EEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 419 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 419 ~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
+++|..+.+++.+. ...|.++|.... .+..+.-.. ..-..|+|+++|++.++ ++. .+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999998888777 568888987654 444433221 25678999999986655 555 6666653
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.3e-05 Score=82.55 Aligned_cols=231 Identities=10% Similarity=0.074 Sum_probs=136.8
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC----cEEEEECCCC
Q 008393 331 LITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNG 405 (567)
Q Consensus 331 ~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg----~I~iwd~~~~ 405 (567)
....|+|+| ++..|+++...+.|+.+|++. +. +..+.........|+|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT-TE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC-CE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 456677776657899999875 33 3444445567889999999887776665333 2333443 23
Q ss_pred eee--EEE--eCCeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCCCCEEEEEeCC--eE
Q 008393 406 SCT--RVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED--SV 477 (567)
Q Consensus 406 ~~~--~~~--~~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d--~I 477 (567)
... ..+ ..+...++++|+.+.++++. .++.|..||..++....... +.......|+|+|+|++|+.+... .|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 221 222 23456788999556666655 47899999998776522222 122456789999999966666544 89
Q ss_pred EEEeCCCCC-CCceEEEeecC---------------CCceE-EEEEe--------CCCCeEEEE-EcCCeEEEEECCCCc
Q 008393 478 RVWTVGSGS-EGECVHELSCN---------------GNKFH-SCVFH--------PTYPSLLVI-GCYQSLELWNMSENK 531 (567)
Q Consensus 478 ~iwd~~~~~-~~~~i~~~~~~---------------~~~i~-~~~~s--------p~~~~l~~~-~~dg~I~iwd~~~~~ 531 (567)
..++..... ....+..+.+. -.... .+++. +++. |+++ ...+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 888765321 00011112111 01122 44553 3344 4444 4456899998 4555
Q ss_pred EEEeccc------------------cCCeeEEEEecC-CCEEEEEECCCcEEEc
Q 008393 532 TMTLTAH------------------EGLIAALAVSTE-TGYVASASHDKFVKLW 566 (567)
Q Consensus 532 ~~~~~~h------------------~~~V~~l~~spd-g~~l~s~s~Dg~I~iW 566 (567)
...+.+. -.....|+++++ +.++++-...+.|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5444322 125789999995 5444444445667654
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.59 E-value=7.7e-05 Score=73.41 Aligned_cols=219 Identities=9% Similarity=-0.028 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCe-eeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 308 DKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 308 dg~I~vwd~~~~~-~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
...|+.++++... ....+......+..++|.+.+..|+.+ ...+.|..++++........+...-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 5678889887653 122222223357789999865555544 45678999998864221222222234567889988777
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCeeEE
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 460 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V~~l 460 (567)
.++++-...+.|.++++........+.. ....+++.|.++.++.+.. .+.|..+++........+...-...+.|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 7887777788999999876543333322 3577889998888888774 5789999887543322233333456899
Q ss_pred EEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCc
Q 008393 461 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENK 531 (567)
Q Consensus 461 ~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~ 531 (567)
+|++++..|+.+... .|..+|+... ....+. .........+++.. ..++... ..+.|..++..+++
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEe--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 999977777776654 8999998643 222222 22334456677753 3455444 45689999986665
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00026 Score=69.50 Aligned_cols=216 Identities=12% Similarity=0.007 Sum_probs=137.1
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC----CeeeEEEe---CCe
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFK---GGT 415 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~----~~~~~~~~---~~~ 415 (567)
+|+.+.. ..|+..|+++. .....+. ....+..++|++.+..++++-..++.|..+++.. ......+. ...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECB-SSEEEEETTSC-CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECC-CeEEEEECCCc-ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3444443 45899999873 3333333 4566889999998788887877789999999886 22222333 245
Q ss_pred eEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---DSVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d~I~iwd~~~~~~~~~i 491 (567)
..+++.+.++.++++. ..+.|.++|+........+.........++++|.+..|+.+.. ..|..+++... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----~~ 155 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----DI 155 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----CE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----Ce
Confidence 6788988777776665 4789999999866544344434456789999996665555543 26888877532 12
Q ss_pred EEe-ecCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEec---cccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 492 HEL-SCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLT---AHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 492 ~~~-~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+ ...-.....+++++++..|+++... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 222 2234567889999988888877654 59999999865443332 123456778875 34444444445556543
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.57 E-value=3.6e-05 Score=72.71 Aligned_cols=198 Identities=11% Similarity=0.135 Sum_probs=128.5
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
.+.+-...+..|+|+|+++.|+++...++.|...|.. ++.++.+. .....+++.+++..+++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4456667899999999988898888889999999998 88877764 256778888776544443346789999876
Q ss_pred CCe---EEEEec------CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-------cCCCceEEEE
Q 008393 443 TQA---CRLSLQ------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------CNGNKFHSCV 505 (567)
Q Consensus 443 ~~~---~~~~~~------~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-------~~~~~i~~~~ 505 (567)
... .+.... ........|+|+|.++.|+++.+. ...||.+........+..+. ..-..+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 123456899999998777776655 44555543110101111111 1233578899
Q ss_pred EeCCCCeEEEEEcC-CeEEEEECCCCcEE--Eec-cc------cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 506 FHPTYPSLLVIGCY-QSLELWNMSENKTM--TLT-AH------EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 506 ~sp~~~~l~~~~~d-g~I~iwd~~~~~~~--~~~-~h------~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++|....|++.+.. ..|.++|....... .+. +. -.....|+|.++|+++++ ++-+.+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987777666655 58899998755222 222 11 125678999999986655 666655544
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.55 E-value=0.00019 Score=71.69 Aligned_cols=224 Identities=9% Similarity=0.042 Sum_probs=141.7
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 334 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
|.+..+ ..+|+.+. ...|+..+++. ... ..+......+..++|++.+..++++-...+.|..+++........+..
T Consensus 38 C~~~~~-~~~ll~~~-~~~I~~i~~~g-~~~-~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 38 CKALGP-EPVLLFAN-RIDIRQVLPHR-SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp EEESSS-CCEEEEEC-BSCEEEECTTS-CCE-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccccc-CceeEeec-ccceEEEeCCC-Cee-EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 444444 23444443 34488888875 332 333333455889999988788887777788999999987765444432
Q ss_pred ---CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCC
Q 008393 414 ---GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGS 486 (567)
Q Consensus 414 ---~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~ 486 (567)
....+++.+.++.++.+.. .+.|.++++........+...-.....|+++|.+..|+....+ .|..+++....
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 3467889987777776665 6799999988664443444444567899999966666655533 68888775421
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEE-eccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
... .+.........+++++++..|+.+.. .+.|+.+|+....... +.........|++. ++.++++-...+.|.
T Consensus 194 -~~~--~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 194 -RRI--IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 269 (349)
T ss_dssp -CEE--SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred -cEE--EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEE
Confidence 111 11223445788999998888887765 4689999988654433 33334566778873 343444433345454
Q ss_pred E
Q 008393 565 L 565 (567)
Q Consensus 565 i 565 (567)
.
T Consensus 270 ~ 270 (349)
T 3v64_C 270 S 270 (349)
T ss_dssp E
T ss_pred E
Confidence 3
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.54 E-value=9.6e-05 Score=74.91 Aligned_cols=216 Identities=9% Similarity=0.018 Sum_probs=140.3
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 419 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~ 419 (567)
+|+.+. ...|+.++++.. .. ..+......+..++|++.+..++++-...+.|..+++........+.. ....++
T Consensus 89 ~l~~~~-~~~I~~i~~~~~-~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRS-EY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp EEEEEC-BSCEEEECTTSC-CC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred eeEeec-CccceeeccCCC-cE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 444443 355888888763 22 233334456889999988788887777788999999987765544443 345688
Q ss_pred EecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEee
Q 008393 420 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 420 ~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~ 495 (567)
+.+.++.++.+.. .+.|.++++........+.........|+++|.+..|+....+ .|..+++... . ......
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~--~~~~~~ 242 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-G--RRIIAD 242 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S--CEEEEC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-C--cEEEEE
Confidence 8887777776665 6789999987654443444444567899999977766665533 6777777543 1 111222
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
..-.....++|++++..|+++... +.|+.+|+...... .+.........|++. .+.++++-...+.|..
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence 234457889999988878877654 68999998765443 333334566788873 4444444444555544
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.53 E-value=0.00055 Score=67.52 Aligned_cols=263 Identities=11% Similarity=0.054 Sum_probs=147.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec----ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~----~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
...+.+|.|..++..+++ +..|.| +...+.++.-..+. .....+.+|.|.+ + .++.++.++.|.. ....+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE--ECCCC
Confidence 457999999988887775 456765 33344343222221 2345688999986 3 3444556664433 33324
Q ss_pred ceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEEEEecCCCEEEEEECCCe
Q 008393 363 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 363 ~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
....... .+...+..|.+.+++ .+++.+ .++.|.. ....++.-... ......+.+.+++. +++.+.++.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEECCCc
Confidence 4333332 234567888877664 455444 4565432 22223322222 22456677888754 455555565
Q ss_pred EEEE-EC--CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeec----CCCceEEEEEeC
Q 008393 436 VSIL-DA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC----NGNKFHSCVFHP 508 (567)
Q Consensus 436 I~i~-d~--~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~----~~~~i~~~~~sp 508 (567)
+..- |. .+.+.+. ......+..+.+.+++.+++.+..+.+++++...+ .....+.. ....+..+++.+
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence 5544 42 3444442 23456788999999988776654447766642212 11111111 123578888988
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEEE-ec---cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~~-~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++. +++++.++.| ++....++... +. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 766 5555567777 44555555443 22 234578899997655 466677888877553
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=0.00025 Score=78.31 Aligned_cols=237 Identities=9% Similarity=-0.044 Sum_probs=151.5
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCC---cee
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG---YSL 365 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~---~~~ 365 (567)
-.|.++.+.. +|+.+ ....|+..++........+. ....+..|+|.+....|+.+ ...+.|+.++++... ...
T Consensus 387 ~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~ 463 (791)
T 3m0c_C 387 KACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 463 (791)
T ss_dssp CCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred ceeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee
Confidence 3454443332 44433 35678888887655444333 44567899999866555554 456789999987521 222
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC--CeEEEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE--NVVSILD 440 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d--g~I~i~d 440 (567)
..+.........|++.+.+..|+++-...+.|.+.++........+.. ....|++.|..+.|+.+... +.|...+
T Consensus 464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 333334456778999988888888888889999999986655444432 36789999998888887752 6899999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
+........+...-.....|++++.+..|+.+... .|..+++... ....+......-.....+++ .+.+|+++..
T Consensus 544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav--~~~~lYwtD~ 620 (791)
T 3m0c_C 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDI 620 (791)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEE--ETTEEEEEET
T ss_pred cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEE--eCCEEEEEEC
Confidence 98765554454444678899999877777777655 8999998643 22222211111223445555 3446666654
Q ss_pred -CCeEEEEECCCCcE
Q 008393 519 -YQSLELWNMSENKT 532 (567)
Q Consensus 519 -dg~I~iwd~~~~~~ 532 (567)
.+.|...|..+++.
T Consensus 621 ~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 621 INEAIFSANRLTGSD 635 (791)
T ss_dssp TTTEEEEEETTTCCC
T ss_pred CCCEEEEEeCCCCcc
Confidence 46888888766643
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=5.8e-05 Score=77.72 Aligned_cols=233 Identities=10% Similarity=0.095 Sum_probs=140.3
Q ss_pred CeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-C----cEEEEEcCCCC
Q 008393 289 KVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K----TVRVWDADNPG 362 (567)
Q Consensus 289 ~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-g----~I~iwd~~~~~ 362 (567)
....++|+| ++..|+++...+.|+++|++++....... .......|+|++++++|+++... + .+.+++.+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 346899998 45566666555889999998766554443 45568899999999977666652 2 24444443211
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEEC-CCeEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAA-ENVVS 437 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-dg~I~ 437 (567)
.....+. .......++++|++..++++-..++.|..|+...+.....+.. ....++|+|++++++++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 1234567889995556776776788999999987765333322 3567999999996666654 67899
Q ss_pred EEECCC--CeE--EEEecCC---C------------CCee-EEEEc--------CCCCEEEEEeCC-eEEEEeCCCCCCC
Q 008393 438 ILDAET--QAC--RLSLQGH---T------------KPID-SVCWD--------PSGELLASVSED-SVRVWTVGSGSEG 488 (567)
Q Consensus 438 i~d~~~--~~~--~~~~~~h---~------------~~V~-~l~~s--------p~g~~l~s~s~d-~I~iwd~~~~~~~ 488 (567)
.++... ++. +..+.+. . .... .+++. ++|.++++-... .|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 877653 221 1122111 0 1122 45553 345555554444 8888883 23
Q ss_pred ceEEEeecC------------------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 489 ECVHELSCN------------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 489 ~~i~~~~~~------------------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
.+..+.+. -.....+++++++..|+++. .++.|+.++++
T Consensus 372 -~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 -RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22222221 12467889999644555554 44578877754
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00039 Score=70.75 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=139.4
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeEEEe---CCe
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFK---GGT 415 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~----~~~~~~~---~~~ 415 (567)
+|+.+. ...|+..+++.... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. ...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444444 35688888886322 2333455678999999987888877777889999998762 2333333 245
Q ss_pred eEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i 491 (567)
..+++.+.++.|+.+.. .+.|.+++++.......+...-.....|+++|.+.+|+.... . .|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 67889887777776665 679999999877655555444456789999997666665542 2 78888886431 11
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEEecc---ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTLTA---HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+...-.....+++++++..|+++.. .+.|+.+|+.......+.. ......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 122223356788999998888888865 4689999998665443322 23445677763 33344444444556543
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.43 E-value=0.00024 Score=69.87 Aligned_cols=218 Identities=9% Similarity=0.007 Sum_probs=136.8
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEe---CCeeEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGTAQM 418 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~---~~~~~~ 418 (567)
+|+.+. ...|+.++++...............+..++|++.+..++++-...+.|..+++...... ..+. .....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 45699999987431222222223457789999877778877777889999999876421 2222 245678
Q ss_pred EEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceEEEe
Q 008393 419 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 ~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i~~~ 494 (567)
++.+.++.++.+.. .+.|.++++........+.........|+++|.+.+|+.+.. . .|..+++... ....+ +
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~--~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFII--I 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEE--E
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEE--E
Confidence 89987777776654 679999998765433333344456789999987666665552 3 7888887532 11111 2
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEEe-ccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
...-.....+++++++..|+.+.. .+.|+.+|+.......+ .........+++.. +.++++-...+.|..
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 223345688999998888887765 46899999976544433 22345567777753 334444333455544
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.43 E-value=7.4e-05 Score=76.94 Aligned_cols=232 Identities=10% Similarity=0.032 Sum_probs=138.7
Q ss_pred CeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC-----cEEEEEcCCC
Q 008393 289 KVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNP 361 (567)
Q Consensus 289 ~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg-----~I~iwd~~~~ 361 (567)
...+++|+++ +..|+.+...+.|+.+|..+++....+. .......|+|+++++ |+.+...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3458999985 4455555444899999998877665443 455689999999999 55554321 1333333221
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEeC----CeeEEEEecCCCEEEEEEC-CCe
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG----GTAQMRFQPHLGRYLAAAA-ENV 435 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~-dg~ 435 (567)
......+. .......+++++++..++++-..++.|+.+|..++... ..+.. ....++++|+++.++++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11011121 23445678899954556656666788999999877662 22222 1235999999997766665 679
Q ss_pred EEEEECC--CCeE--EEEecCC---------------CCCeeEEEE---------cCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 436 VSILDAE--TQAC--RLSLQGH---------------TKPIDSVCW---------DPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 436 I~i~d~~--~~~~--~~~~~~h---------------~~~V~~l~~---------sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
|..++.. ++.. ...+.+. -.....+++ ..+|.++++-... .|+.++. .+
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 3321 1122111 123567999 7777776666666 8999985 22
Q ss_pred CCceEEEeecC------------------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 487 EGECVHELSCN------------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 487 ~~~~i~~~~~~------------------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
.+..+.+. -.....++++|....|+++. .++.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 23333221 12356788884333344444 45677777654
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00014 Score=74.77 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=136.8
Q ss_pred cEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC---C-cEEEEECCC
Q 008393 331 LITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---G-EIRYWSINN 404 (567)
Q Consensus 331 ~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d---g-~I~iwd~~~ 404 (567)
....|+|+|+ ...|+.+...+.|+.+|..+ +. +..+.........|+|+++++ ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g~-v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-QY-VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-TE-EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC-CE-EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 3568899984 45666665558899999975 33 344444556789999999988 66554321 1 233333322
Q ss_pred Cee-eEEE--eCCeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEe-cC-CCCCeeEEEEcCCCCEEEEEeCC--e
Q 008393 405 GSC-TRVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSL-QG-HTKPIDSVCWDPSGELLASVSED--S 476 (567)
Q Consensus 405 ~~~-~~~~--~~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~-~~-h~~~V~~l~~sp~g~~l~s~s~d--~ 476 (567)
+.. ...+ -.....+++.+..+.++++. .++.|+.+|..++.....+ .. ....-..|+|+|+|++|+.+... .
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 211 0111 13345678899556666555 4678999999877652222 21 22233479999999966666654 8
Q ss_pred EEEEeCCCC-CCCceEEEeecC---------------CCceEEEEE---------eCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 477 VRVWTVGSG-SEGECVHELSCN---------------GNKFHSCVF---------HPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 477 I~iwd~~~~-~~~~~i~~~~~~---------------~~~i~~~~~---------sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
|+.+++... ........+.+. -.....+++ ..++.++++-...+.|+.++. ++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 999887521 111111112111 123566888 666665554455678999985 555
Q ss_pred EEEeccc------------------cCCeeEEEEe-cCCCEEEEEECCCcEEEc
Q 008393 532 TMTLTAH------------------EGLIAALAVS-TETGYVASASHDKFVKLW 566 (567)
Q Consensus 532 ~~~~~~h------------------~~~V~~l~~s-pdg~~l~s~s~Dg~I~iW 566 (567)
...+.+. -.....|+++ +++.++++=...+.|+.+
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 5444322 1236789999 566555554456677654
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=2.6e-05 Score=86.40 Aligned_cols=190 Identities=14% Similarity=0.154 Sum_probs=118.0
Q ss_pred cEEEEEEc-CCCCeEEEEEeCCC----cEEEEECCCC-eeeE-EEeCCeeEEEEecCCCEEEEEECC-----CeEEEEEC
Q 008393 374 SVMSLDFH-PNKDDLICSCDGDG----EIRYWSINNG-SCTR-VFKGGTAQMRFQPHLGRYLAAAAE-----NVVSILDA 441 (567)
Q Consensus 374 ~V~~l~~~-p~~~~li~s~~~dg----~I~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~d-----g~I~i~d~ 441 (567)
.+...+|+ |||+.++++.+.+| .|+++|+.++ +.+. .+......+.|+|++..|+....+ ..|+++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 57789999 99998887776554 4999999998 6322 122234567899999888887765 36888998
Q ss_pred CCCe--EEEEec-CCCCCeeEEEEcCCCCEEEEEe---CC-eEEEEeCCCCCCCce-EEEe-ecCCCceEEEEEeCCCCe
Q 008393 442 ETQA--CRLSLQ-GHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGEC-VHEL-SCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 442 ~~~~--~~~~~~-~h~~~V~~l~~sp~g~~l~s~s---~d-~I~iwd~~~~~~~~~-i~~~-~~~~~~i~~~~~sp~~~~ 512 (567)
.++. ....+. ........+.|+|||++|+..+ .. .|+++|+.++.. .. +..+ .........+.|+. +..
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSH 332 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCE
Confidence 8763 222332 2334567889999999888765 23 689999976521 11 1222 22334445555444 555
Q ss_pred EEEEEcC-----CeEEEEECCC-CcEEE-eccccC--CeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 513 LLVIGCY-----QSLELWNMSE-NKTMT-LTAHEG--LIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 513 l~~~~~d-----g~I~iwd~~~-~~~~~-~~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|+..+.. ..|+.+|+.+ +.... +..+.. .+..+.+. .+.++++...||..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 5555433 2788888875 33233 344443 34455554 23455666677766654
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.39 E-value=0.00013 Score=71.41 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=123.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC----CC---eEEEEeC---CCcEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS----MP---RLATSSF---DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~----~~---~l~s~s~---dg~I~iwd~~~~~~~~~~ 367 (567)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++... +++|.+|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3345565667789999999 8898888864 45666666553 22 2333333 578999988532333444
Q ss_pred ecc------CC-CcEEEEEE--cCC-CCeEEEEEeCCCcEEEEECC-------CCeeeEEEe--CCeeEEEEecCCCEEE
Q 008393 368 FMG------HS-ASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN-------NGSCTRVFK--GGTAQMRFQPHLGRYL 428 (567)
Q Consensus 368 ~~~------h~-~~V~~l~~--~p~-~~~li~s~~~dg~I~iwd~~-------~~~~~~~~~--~~~~~~~~~~~~~~l~ 428 (567)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.|. +....+.+.+..+.++
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 422 11 56677888 664 44456678889999999983 335566665 3567788889999999
Q ss_pred EEECCCeEEEEECC-----CCeEEEEec-CC-CCCeeEEEEc--CCCC-EEEEEeCC--eEEEEeCC
Q 008393 429 AAAAENVVSILDAE-----TQACRLSLQ-GH-TKPIDSVCWD--PSGE-LLASVSED--SVRVWTVG 483 (567)
Q Consensus 429 ~~~~dg~I~i~d~~-----~~~~~~~~~-~h-~~~V~~l~~s--p~g~-~l~s~s~d--~I~iwd~~ 483 (567)
++-.+..|..||.+ +++.+..+. ++ ...+..|++. ++++ ||++.+.+ ...+||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999889999965 355665553 22 2468888884 4555 66666644 89999996
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00024 Score=73.57 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=72.3
Q ss_pred CeEEEEEcC-CCC-eEEEEeCCCcEEEEeCCCCeeeeeeccc---CccEEEEEE-------CCCCCeEEEEeCCC-----
Q 008393 289 KVICCHFSS-DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRF-------SPSMPRLATSSFDK----- 351 (567)
Q Consensus 289 ~V~~l~~s~-dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h---~~~V~~i~f-------sp~~~~l~s~s~dg----- 351 (567)
....|+|+| ++. ++++....+.|++.|++++.....+..- ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456899998 344 4444444577999999887776655432 235899999 99999777776654
Q ss_pred --cEEEEEcCCCCcee-----EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 352 --TVRVWDADNPGYSL-----RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 352 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
.|.+++....+... ..+... .....++++|++..|+++...++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 25566544311111 122111 2334677788767777677777778888876
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.26 E-value=0.0009 Score=73.88 Aligned_cols=202 Identities=10% Similarity=-0.014 Sum_probs=130.3
Q ss_pred CCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcC
Q 008393 286 STSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDAD 359 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~ 359 (567)
....+..|+|++....| ++-...+.|+.+++... .....+.........|++.+.+..|+.+ ...+.|.+.+++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 35567899999855544 45555678999988753 2233344344557789998877655544 557889999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC-CC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN 434 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-dg 434 (567)
. ......+.........|++.|.+..|+++-... +.|.+.++........+.. ....|++.+..++|+++.. .+
T Consensus 502 G-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 502 G-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp S-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred C-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 5 333333333445689999999877777665333 7899999876555444443 4577999988888888866 56
Q ss_pred eEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCce
Q 008393 435 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC 490 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~ 490 (567)
.|..+++........+.. .-.....|++. +..|+..... .|...+..++.....
T Consensus 581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL 638 (791)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred cEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEE
Confidence 899999876544433332 22344567664 3355555544 788888776644333
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.23 E-value=4.8e-05 Score=82.96 Aligned_cols=226 Identities=7% Similarity=-0.003 Sum_probs=126.1
Q ss_pred EEEECC-CCCeEEEEeCCC-----------cEEEEEcCCCCce-eEEe-ccCCCcEEEEEEcCCCCeEEEEEe-CCCcEE
Q 008393 334 DVRFSP-SMPRLATSSFDK-----------TVRVWDADNPGYS-LRTF-MGHSASVMSLDFHPNKDDLICSCD-GDGEIR 398 (567)
Q Consensus 334 ~i~fsp-~~~~l~s~s~dg-----------~I~iwd~~~~~~~-~~~~-~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~ 398 (567)
++++.+ ++++++.|+.+. .+.+||..+.... +..+ ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 556667 888888887643 5889999874432 1222 12333344567777765 555666 456899
Q ss_pred EEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEE-CC-----CeEEEEECCCCeEEEEe----cCCCCCeeEEEEcC
Q 008393 399 YWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAA-AE-----NVVSILDAETQACRLSL----QGHTKPIDSVCWDP 464 (567)
Q Consensus 399 iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~d-----g~I~i~d~~~~~~~~~~----~~h~~~V~~l~~sp 464 (567)
+||..+.+....-.. ....+...+++..+++++ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999988765543211 123445566777788877 33 57999999887644320 00000000011223
Q ss_pred CCCEEEEEe----------CCeEEEEeCCCCCCCceEEEeec------CCCceEEEEEeC-CCCeEEEEEcCC-------
Q 008393 465 SGELLASVS----------EDSVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHP-TYPSLLVIGCYQ------- 520 (567)
Q Consensus 465 ~g~~l~s~s----------~d~I~iwd~~~~~~~~~i~~~~~------~~~~i~~~~~sp-~~~~l~~~~~dg------- 520 (567)
++.+++.++ .+.+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 344444442 23678899876532111111111 011223444444 566666666432
Q ss_pred ----eEEEEECCCCcEEEec---cccCC-eeEEEEecCCCEEEEEECC
Q 008393 521 ----SLELWNMSENKTMTLT---AHEGL-IAALAVSTETGYVASASHD 560 (567)
Q Consensus 521 ----~I~iwd~~~~~~~~~~---~h~~~-V~~l~~spdg~~l~s~s~D 560 (567)
.|.+||..+.....+. ..... -.++++.+++++++.||.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6889998887766543 12222 2345667899999999865
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.23 E-value=0.0031 Score=67.86 Aligned_cols=274 Identities=10% Similarity=0.009 Sum_probs=159.1
Q ss_pred CCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCce
Q 008393 288 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYS 364 (567)
Q Consensus 288 ~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~ 364 (567)
.....+++++.+..|+ +-...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++.. ..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ce
Confidence 4577899999665554 4456789999998754433333344456778999998767766654 356777777642 22
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC-CCeEEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVVSILD 440 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-dg~I~i~d 440 (567)
.......-.....|++.+++..|+++-...+.|..+|+.......... .+...+++.. +.++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS--SEEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEEEEEE
Confidence 222323445678999999888888777778899999997654433332 1233455543 35555554 67888888
Q ss_pred CCCCeEEEEecCCCCC-------------------------eeEEEE-----------cC-------CC--------CEE
Q 008393 441 AETQACRLSLQGHTKP-------------------------IDSVCW-----------DP-------SG--------ELL 469 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~-------------------------V~~l~~-----------sp-------~g--------~~l 469 (567)
..+++....+...... ...+|+ .| |+ .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 8766433222111000 011111 11 11 144
Q ss_pred EEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEE-eccccCCeeEEEE
Q 008393 470 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMT-LTAHEGLIAALAV 547 (567)
Q Consensus 470 ~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~ 547 (567)
+.+....|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++....... +......+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 44444466777776543211111111 1234678899997777777764 5689999988654433 3333356778999
Q ss_pred ecCCCEEEEEE-CCCcEEE
Q 008393 548 STETGYVASAS-HDKFVKL 565 (567)
Q Consensus 548 spdg~~l~s~s-~Dg~I~i 565 (567)
.+.++.|+.+. ..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555444433 3444543
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.18 E-value=0.0024 Score=68.82 Aligned_cols=217 Identities=10% Similarity=-0.025 Sum_probs=141.3
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 419 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~ 419 (567)
+|+.+ ....|+..++++...........-..+..|+|++.+..++++-..++.|..+++........+.. ....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 45669999998643221111123356889999998888887877889999999987655444442 356789
Q ss_pred EecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceEEEee
Q 008393 420 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 420 ~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
+.+.++.++.+.. .+.|.+.++........+...-.....|+++|...+|+.... . .|...++.... ...+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE---E
Confidence 9988888777765 679999998765433333334456789999996555555552 3 78888876432 2222 2
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
........+++++++..|+.+... +.|..+|+.......+.........|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245567899999988888887654 689999997755443333344556777764 333333333455543
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.15 E-value=0.0016 Score=70.06 Aligned_cols=221 Identities=9% Similarity=-0.017 Sum_probs=137.2
Q ss_pred CCCcEEEEeCCCCe-eeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 307 HDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 307 ~dg~I~vwd~~~~~-~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
....|++.+++... ....+.........|+|++.+..|+.+.. .+.|..++++........+...-.....|++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 46778888887543 22223333455789999997777766654 67788999875322223333333678999999987
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCeeE
Q 008393 385 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
..++++-...+.|.+.++........+. .....+++.|..+.++.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 8888787788999999998655433332 24567899998888888774 367888887654333333333456789
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~ 532 (567)
|++++++..|+.+... .|..+|+........+. ........+++..+ .|+.+. ..+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999987777777654 89999986432212111 11122234566544 566655 346888888877653
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.12 E-value=0.0092 Score=64.24 Aligned_cols=222 Identities=8% Similarity=-0.046 Sum_probs=148.3
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
+|+.+ ..+.|+..++++......+. ..-..+..|+|++.+..|+.+ ..++.|..++++.. .....+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceE
Confidence 44444 46788999998655433332 223468899999976666655 45788999998753 2223333223457789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGH 453 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h 453 (567)
++.+.+..|+++-...+.|.+.++........+. .....+++.|..+.++.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 9988878888787778899999997654333332 24578899998888888774 5688888887654333333 3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC
Q 008393 454 TKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 530 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 530 (567)
-.....|++++++..|+.+... .|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 4567899999987777777655 899999975422 22 222334455777765 35666654 578999997666
Q ss_pred c
Q 008393 531 K 531 (567)
Q Consensus 531 ~ 531 (567)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.11 E-value=6.2e-06 Score=90.39 Aligned_cols=224 Identities=8% Similarity=-0.035 Sum_probs=134.6
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCC---CceeEEeccCCCcEEEEEEcC
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHP 382 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~p 382 (567)
..+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 346788888877665544443 33467889998777766664 4578999998741 111111211223355688876
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCe
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
.+..|+++-...+.|.++++........+.. ....+++.|.++.|+.+.. .+.|..+++........+...-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 6667776666678999999886654444332 3467888888777776654 2688888876443222222223456
Q ss_pred eEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEE
Q 008393 458 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMT 534 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~ 534 (567)
..|+|++++..|+.+... .|.++++... ....+............+++..+ .|+++. ..+.|..++..+++.+.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 789999986666655544 8999998643 22222211111122334455443 455554 45689999987776653
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.08 E-value=0.00094 Score=66.60 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=121.4
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee--eeeec---ccCccEEEEEECCC---CCeEEEEeC-C-----CcE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE---EHSSLITDVRFSPS---MPRLATSSF-D-----KTV 353 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~--~~~l~---~h~~~V~~i~fsp~---~~~l~s~s~-d-----g~I 353 (567)
..-..++|.|||+++++ ..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34569999999985554 5679999998 3432 22221 22456889999998 556555543 2 568
Q ss_pred EEEEcCCCC----c-eeEEec---cCCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC-------
Q 008393 354 RVWDADNPG----Y-SLRTFM---GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG------- 405 (567)
Q Consensus 354 ~iwd~~~~~----~-~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~------- 405 (567)
..|+..... . .+..+. +.......|+|.|+|. |+++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 888876421 1 112232 1112346899999985 5544332 256666665531
Q ss_pred -----eeeEEEe-C--CeeEEEEecCCCEEEEEECC-Ce--------EEEEECCC----------------CeEEEEecC
Q 008393 406 -----SCTRVFK-G--GTAQMRFQPHLGRYLAAAAE-NV--------VSILDAET----------------QACRLSLQG 452 (567)
Q Consensus 406 -----~~~~~~~-~--~~~~~~~~~~~~~l~~~~~d-g~--------I~i~d~~~----------------~~~~~~~~~ 452 (567)
.....+. + ....++|+++.+.++++... +. |.+..... ..++..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 1111121 1 24557899955556555442 22 33332211 01222332
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC---ceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 453 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG---ECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~---~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
+......++| .+|.++++...+ .|...++...... .....+......+..+++.|||..+++.
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 466666665555 7888877643210 1122222334568899999998755544
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.002 Score=64.15 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=122.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCC---CCeEEEEEeCC-----CcEE
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDGD-----GEIR 398 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~---~~~li~s~~~d-----g~I~ 398 (567)
..-..|+|.|+|+ |+++..+|.|++++ +.....+..+. ........|+|+|+ +..++++.... +.|.
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 3467999999998 45556679999998 32111122111 12356889999998 56666555433 6788
Q ss_pred EEECCCCee-----e-EEEe--C----CeeEEEEecCCCEEEEEEC-------------CCeEEEEECCCC---------
Q 008393 399 YWSINNGSC-----T-RVFK--G----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ--------- 444 (567)
Q Consensus 399 iwd~~~~~~-----~-~~~~--~----~~~~~~~~~~~~~l~~~~~-------------dg~I~i~d~~~~--------- 444 (567)
.|+...+.. + ..+. . ....+.|.|++..+++.+. .+.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888775421 1 1132 1 2357899998854444332 146666666531
Q ss_pred -----eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eE------EEEeCCCCCC---------------CceEEEeec
Q 008393 445 -----ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SV------RVWTVGSGSE---------------GECVHELSC 496 (567)
Q Consensus 445 -----~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I------~iwd~~~~~~---------------~~~i~~~~~ 496 (567)
..+. ..++ .....++|+| +|.++++-... .+ .|.-+..+.. ...+..+ .
T Consensus 189 ~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~ 265 (352)
T 2ism_A 189 RRGARPEVY-SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-P 265 (352)
T ss_dssp CTTSCTTEE-EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-T
T ss_pred CCCCCccEE-EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-C
Confidence 0111 1122 2356789999 67665554433 32 2333222220 0122222 1
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-------EEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.......++| .++..+++.-..+.|...++.... ...+..-...+..+++.|||.++++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234556677 456544444445678877776432 112222335789999999998777654
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0024 Score=62.57 Aligned_cols=188 Identities=13% Similarity=0.174 Sum_probs=122.3
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC----CC---eEEEEEeC--CCcEEEEECC--CCeee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KD---DLICSCDG--DGEIRYWSIN--NGSCT 408 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~----~~---~li~s~~~--dg~I~iwd~~--~~~~~ 408 (567)
...+++.....+-+.+||+. ++.+..+.. +.++.+.+-|. +. ..+++.-. ++.|.+|++. ++. +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~--G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD--GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT--SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcCC--CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34466666677789999994 666676653 56777777653 11 23444444 6899999773 433 3
Q ss_pred EEEe----------CCeeEEEE--ecCCC--EEEEEECCCeEEEEECC-------CCeEEEEecCCCCCeeEEEEcCCCC
Q 008393 409 RVFK----------GGTAQMRF--QPHLG--RYLAAAAENVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGE 467 (567)
Q Consensus 409 ~~~~----------~~~~~~~~--~~~~~--~l~~~~~dg~I~i~d~~-------~~~~~~~~~~h~~~V~~l~~sp~g~ 467 (567)
..+. .....+|+ ++..+ ++++...++.+..|++. +.+.+.+|.. ...+..+..++...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence 3331 22334666 66555 46777778999998882 3466777764 35788899999889
Q ss_pred EEEEEeCC-eEEEEeCCCC--CCCceEEEeec--CCCceEEEEE--eCCCC-eEEEEE-cCCeEEEEECC-CCcEE
Q 008393 468 LLASVSED-SVRVWTVGSG--SEGECVHELSC--NGNKFHSCVF--HPTYP-SLLVIG-CYQSLELWNMS-ENKTM 533 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~--~~~~~i~~~~~--~~~~i~~~~~--sp~~~-~l~~~~-~dg~I~iwd~~-~~~~~ 533 (567)
.|+.+-++ .|..|+.+.. .....+..+.. -...+..+++ .++++ +|++++ .++++.+||.. +.+.+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 99999999 8777775432 22344544421 1235777877 45566 777777 56799999997 45544
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.00 E-value=0.0054 Score=61.06 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=125.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-eeeeec---ccCccEEEEEECCC---CCeEEEEeC----C----C
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE---EHSSLITDVRFSPS---MPRLATSSF----D----K 351 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-~~~~l~---~h~~~V~~i~fsp~---~~~l~s~s~----d----g 351 (567)
-.....++|.|||++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34567999999997555 45679999997 3454 222221 22356889999997 555555443 3 5
Q ss_pred cEEEEEcCCCC------ce-eEEec-cCCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC-----
Q 008393 352 TVRVWDADNPG------YS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG----- 405 (567)
Q Consensus 352 ~I~iwd~~~~~------~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~----- 405 (567)
.|..|+..... +. +..+. ........|+|.|+|. |+++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67888876531 11 11122 1112246799999986 4444332 245666665432
Q ss_pred ----eeeEEEe-CCeeEEEEecCCCEEEEEECCC----eEEEEECCC----------------CeEEEEecCCCCCeeEE
Q 008393 406 ----SCTRVFK-GGTAQMRFQPHLGRYLAAAAEN----VVSILDAET----------------QACRLSLQGHTKPIDSV 460 (567)
Q Consensus 406 ----~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg----~I~i~d~~~----------------~~~~~~~~~h~~~V~~l 460 (567)
..+.... .....++|+++.+.++++.... .|.+..... ..++..+.........+
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 0111111 1345788999656666665432 344433211 01223331122456788
Q ss_pred EEc-------CCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCCCeEEEE
Q 008393 461 CWD-------PSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 461 ~~s-------p~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~ 516 (567)
+|. .+|.++++.... .|...++...........+. .....+..+++.|||..+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 884 467777666555 88888886432111122332 224568899999998644443
No 299
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.97 E-value=0.026 Score=62.28 Aligned_cols=262 Identities=10% Similarity=0.098 Sum_probs=153.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...|.++....+| .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+| |..||..+ .. +.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~G-l~~~~~~~-~~-~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALNG-LYTYQLQS-RK-LT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETTE-EEEEETTT-CC-EE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCCc-ceeEeCCC-Ce-EE
Confidence 4568888888776 555666554 789998876544321122335777754 344 566677664 88899875 22 22
Q ss_pred Eec-----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEECC
Q 008393 367 TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 367 ~~~-----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~d 433 (567)
.+. .....|.++....++..++ +.. +-|..++..+++....... .+.++....+++.+.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 331 1235688888887766444 443 4588889887664332111 1455666666676666664
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEe-----ecCCCceEEEEEeC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHP 508 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~-----~~~~~~i~~~~~sp 508 (567)
+.|..||..+++...........|.++....+|.+.+.. .+.+.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 578899988775432211123458888888888766644 45888898765421 111100 11234588888887
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcE-EEec-----cccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKT-MTLT-----AHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~-~~~~-----~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+|. |.+|+..| +.++....... .... .....|.++....+|.+.+ |+.+|.++
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~ 347 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR 347 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence 776 66676666 55554322111 1111 1234688888877777654 34555443
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.95 E-value=0.0037 Score=60.68 Aligned_cols=193 Identities=8% Similarity=0.103 Sum_probs=119.5
Q ss_pred EEEEcCCCCeEEEEe-CCCcEEEEeCCCCeeeee-ecc----c--CccEEEEEE---CCCCCeEEEEe------------
Q 008393 292 CCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTN-LEE----H--SSLITDVRF---SPSMPRLATSS------------ 348 (567)
Q Consensus 292 ~l~~s~dg~~lasg~-~dg~I~vwd~~~~~~~~~-l~~----h--~~~V~~i~f---sp~~~~l~s~s------------ 348 (567)
|++|++....|..++ ..+.|..|+...+..... +.+ . ...+..|.| .++++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 789988555555555 789999999975543332 322 1 114689999 68877776543
Q ss_pred -CCCcEEEEEcC---CCCceeE-Eecc-----------CCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEE
Q 008393 349 -FDKTVRVWDAD---NPGYSLR-TFMG-----------HSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVF 411 (567)
Q Consensus 349 -~dg~I~iwd~~---~~~~~~~-~~~~-----------h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~ 411 (567)
.+..|..||+. +...... .+.. -......++..++|+-++ +++.- +.|..++.........+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKTVSTFA 175 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCCEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCEEeeee
Confidence 25779999998 5332211 2211 113488999999987555 77777 77777777654332222
Q ss_pred e--------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE-EEEec--CC---CCCeeEE-EEcCCCCEEE-EEeCC
Q 008393 412 K--------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQ--GH---TKPIDSV-CWDPSGELLA-SVSED 475 (567)
Q Consensus 412 ~--------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~--~h---~~~V~~l-~~sp~g~~l~-s~s~d 475 (567)
. .+.+.+++.|++..|++....+.|..+|+.+... ...+. +. -.....| ..-.+|+.|+ +....
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~ 255 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAP 255 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETT
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCC
Confidence 1 1345899999999999998899999999885432 01121 21 1223343 3334777744 44445
Q ss_pred -eEEEEeCCCC
Q 008393 476 -SVRVWTVGSG 485 (567)
Q Consensus 476 -~I~iwd~~~~ 485 (567)
.+.+.+....
T Consensus 256 ~~~~l~S~DgW 266 (334)
T 2p9w_A 256 YAISFRSWDNW 266 (334)
T ss_dssp EEEEEECSSTT
T ss_pred CEEEEECCCCc
Confidence 5555555443
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.92 E-value=0.0023 Score=63.48 Aligned_cols=167 Identities=8% Similarity=0.035 Sum_probs=97.5
Q ss_pred CCCcEEEEEcCCCCceeE--Eecc-----CCCcEEEEEEcC--CCC-eEEEEEeC--CCcEEEEECCCC--ee--eEEEe
Q 008393 349 FDKTVRVWDADNPGYSLR--TFMG-----HSASVMSLDFHP--NKD-DLICSCDG--DGEIRYWSINNG--SC--TRVFK 412 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~--~~~~-----h~~~V~~l~~~p--~~~-~li~s~~~--dg~I~iwd~~~~--~~--~~~~~ 412 (567)
.+|.|.++|.++...... .+.+ .......|.+.+ ++. +|+++-.. +..|.+|++... .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974322122 2222 234678888866 344 34444333 457777776543 22 22333
Q ss_pred C----CeeEEEEecCCCEEEEEE-----------------CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEE
Q 008393 413 G----GTAQMRFQPHLGRYLAAA-----------------AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 413 ~----~~~~~~~~~~~~~l~~~~-----------------~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s 471 (567)
+ ..+.+.+.+++..++... ..+.|+.||...-+. ... .-..-+.|+|+||++.|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~--~~~-~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV--VAE-GFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE--EEE-EESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE--eec-CCcccCcceECCCCCEEEE
Confidence 2 356788888865444432 125666676642222 122 2245688999999998888
Q ss_pred EeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC-CCCeEEEEEcC
Q 008393 472 VSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCY 519 (567)
Q Consensus 472 ~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~~d 519 (567)
+... .|..|++...........+ ......-.+++.+ +|++.+++..+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 7754 8999998643222223333 2345677889999 58866655544
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.91 E-value=0.0077 Score=59.93 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=127.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCC---CCeEEEEEeC---C----Cc
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDG---D----GE 396 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~---~~~li~s~~~---d----g~ 396 (567)
.....|+|.|+++ |+++..+|.|++++.+. ...+..+. ........|+|+|+ +..++++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPSG-KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSSC-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCC-ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578899999996 55566679999997432 22222211 12356889999997 5566655442 3 56
Q ss_pred EEEEECCCC--e-----ee-EEEeC----CeeEEEEecCCCEEEEEEC-------------CCeEEEEECCCC-------
Q 008393 397 IRYWSINNG--S-----CT-RVFKG----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ------- 444 (567)
Q Consensus 397 I~iwd~~~~--~-----~~-~~~~~----~~~~~~~~~~~~~l~~~~~-------------dg~I~i~d~~~~------- 444 (567)
|..|+.... . .+ ..+.. ....+.|.|++..+++.+. .+.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887654 1 11 11221 2356899999865555332 246666666432
Q ss_pred --eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC----eEEEEeCCCCCC---------------CceEEEeecCCCceE
Q 008393 445 --ACRLSLQGHTKPIDSVCWDP-SGELLASVSED----SVRVWTVGSGSE---------------GECVHELSCNGNKFH 502 (567)
Q Consensus 445 --~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d----~I~iwd~~~~~~---------------~~~i~~~~~~~~~i~ 502 (567)
..+. ..++. ....|+|++ +|.++++-... .|.+..- +.. ...+..+........
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1121 22333 345799999 67765554322 2444332 210 012222212234567
Q ss_pred EEEEe-------CCCCeEEEEEcCCeEEEEECCCC-cEE---Eec-cccCCeeEEEEecCCCEEEEEE
Q 008393 503 SCVFH-------PTYPSLLVIGCYQSLELWNMSEN-KTM---TLT-AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 503 ~~~~s-------p~~~~l~~~~~dg~I~iwd~~~~-~~~---~~~-~h~~~V~~l~~spdg~~l~s~s 558 (567)
.++|. .++.++++.-..+.|..+++... ... .+. .....+..+++.|||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 77883 46655555455568988888753 222 222 2245789999999998776654
No 303
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.90 E-value=0.05 Score=60.02 Aligned_cols=266 Identities=9% Similarity=0.033 Sum_probs=153.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-ecc----cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEE----HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~-l~~----h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
...|.++....+|.+.+ |+. +-|..|+..+++.... +.. ....|.++....++..|..|... -|..+|..+
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~- 220 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPST- 220 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTT-
T ss_pred CCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCC-
Confidence 35688998888887665 444 4577888877654321 111 12348888888777766566644 488888875
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----------CCeeEEEEecCCCEEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~ 431 (567)
+.......-....|.++....++..++ |+ ++-|.+++..++....... ..+.++....+ +.+.+++
T Consensus 221 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lWiGT 296 (758)
T 3ott_A 221 GQIKQTEAFHNNSIKSLALDGNGDLLA--GT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-HNIWLGT 296 (758)
T ss_dssp TEEEEEEEEEEEEEEEEEECTTCCEEE--EE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-CCEEEEE
T ss_pred CeEEeccCCCCCeEEEEEEcCCCCEEE--Ee-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-CCEEEEe
Confidence 322111111234588888887776444 44 3468889887765433221 12344555544 4566666
Q ss_pred CCCeEEEEECCCCeEEEEec-----CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEee-------cCCC
Q 008393 432 AENVVSILDAETQACRLSLQ-----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-------CNGN 499 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~-------~~~~ 499 (567)
..| +.++.....-...... .....|.++....+|.+.+. +.+.+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcceeecccccccce-eEEeccCCcCCCCCCC
Confidence 666 5444332211111111 12346889988888886665 44577777765432111 11111 1234
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec--c-----ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--A-----HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~--~-----h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++.+.+ |+..+-|.+|
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 578888777776 56666 568999999887655332 1 224588888777776544 5554445444
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.87 E-value=0.022 Score=54.83 Aligned_cols=247 Identities=10% Similarity=0.163 Sum_probs=148.5
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.+..|.|.|+.+...+.+-.-. --+...+|..+.||.-. ..++.|+|+++ +..+..+.- ...|.-=.|..+. .
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnlet-K~klks~~~-~e~VvfWkWis~~-~ 119 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN-T 119 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCEEEEEECSSS-E
T ss_pred CCCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHH-hhhhcceec-CCccEEEEecCCC-e
Confidence 3447889999876544222111 11334588888777766 67899999998 555665553 4567777776553 3
Q ss_pred EEEEEeCCCcEEEEECCC-CeeeEEEeCC-------eeEEEEecCCCEEEEEEC-------CCeEEEEECCCCeEEEEec
Q 008393 387 LICSCDGDGEIRYWSINN-GSCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~-~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 451 (567)
+.+.. +..|+-|++.. ....+.|..+ +...+.+++..+++..+- .|.+.+|..+.+..- .+.
T Consensus 120 L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ie 196 (365)
T 2xzh_A 120 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE 196 (365)
T ss_dssp EEEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EEC
T ss_pred EEEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc-eee
Confidence 33333 67899999975 3455666532 233456777787766553 367889988876433 556
Q ss_pred CCCCCeeEEEEcCC---CCEEEEEeC---C-eEEEEeCCCC---CC---CceEEEeec---CCCceEEEEEeCCCCeEEE
Q 008393 452 GHTKPIDSVCWDPS---GELLASVSE---D-SVRVWTVGSG---SE---GECVHELSC---NGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 452 ~h~~~V~~l~~sp~---g~~l~s~s~---d-~I~iwd~~~~---~~---~~~i~~~~~---~~~~i~~~~~sp~~~~l~~ 515 (567)
+|......+.+..+ ..+++.+.. + +++|.++... .. .+.+..+-. ..+-..++.+++....++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 66443332222211 124444443 2 7899998543 11 111111111 2344667889999999999
Q ss_pred EEcCCeEEEEECCCCcEEE-eccccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 516 IGCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
.+..|.|++||++++.++. -.-....|..-+...+..=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 9999999999999999873 23334445444443333334444455544
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.84 E-value=0.0087 Score=58.08 Aligned_cols=203 Identities=11% Similarity=0.102 Sum_probs=126.6
Q ss_pred cCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEecc----CC--CcEEEEEE---cCCCCeEEEEEe-----
Q 008393 328 HSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----HS--ASVMSLDF---HPNKDDLICSCD----- 392 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~----h~--~~V~~l~~---~p~~~~li~s~~----- 392 (567)
....-.+++|.+....|+.++ ..++|..||..........+.+ .. ..+..|.| .++ ..|+++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence 333445788988666666666 7999999999753322222222 11 14678999 587 45555443
Q ss_pred --------CCCcEEEEECC---CCeeeEEEe------C----------CeeEEEEecCCCEEEEEECC-CeEEEEECCCC
Q 008393 393 --------GDGEIRYWSIN---NGSCTRVFK------G----------GTAQMRFQPHLGRYLAAAAE-NVVSILDAETQ 444 (567)
Q Consensus 393 --------~dg~I~iwd~~---~~~~~~~~~------~----------~~~~~~~~~~~~~l~~~~~d-g~I~i~d~~~~ 444 (567)
.+..|..||+. +++.+.... + ....++..++|+.+++.+.. +.|..++....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 777765543 1 35678999999999988888 99998888765
Q ss_pred eEEEEe-cC----CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-c---CCCceEE-EEEeCCCCeE
Q 008393 445 ACRLSL-QG----HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-C---NGNKFHS-CVFHPTYPSL 513 (567)
Q Consensus 445 ~~~~~~-~~----h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~---~~~~i~~-~~~sp~~~~l 513 (567)
....-+ .. .....+.|+++|+|++|++...+ .|..+|+...... .+..-. + ....... +..-.+|+.|
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEE
Confidence 333211 11 12236799999999988877667 8999998742110 122110 1 1222334 3444577775
Q ss_pred EEEEc-CCeEEEEECCCCcE
Q 008393 514 LVIGC-YQSLELWNMSENKT 532 (567)
Q Consensus 514 ~~~~~-dg~I~iwd~~~~~~ 532 (567)
+++.. .+.+.+.+....+.
T Consensus 249 lV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp EEEEETTEEEEEECSSTTSE
T ss_pred EEEcCCCCEEEEECCCCcce
Confidence 65554 45555665554443
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.84 E-value=0.0022 Score=62.14 Aligned_cols=228 Identities=13% Similarity=0.043 Sum_probs=116.3
Q ss_pred CCCeEEEEe-CC-----CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCC--
Q 008393 298 DGKLLATGG-HD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG-- 362 (567)
Q Consensus 298 dg~~lasg~-~d-----g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~-- 362 (567)
++.+++.|+ .+ ..+.+||..+.+.... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 33 4788999887654332 2211111222222 46677777754 458999998744
Q ss_pred -ceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEeC--Ce-eEEEEecCCCEEEEEEC
Q 008393 363 -YSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 363 -~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~ 432 (567)
.... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-.. .. ...+...++..++.++.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 2111 11111111122222 34567677654 3688999988775543221 11 11111224444555554
Q ss_pred C-----CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC------CeEEEEeCCCCCCCceEEEeecCCCc
Q 008393 433 E-----NVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 433 d-----g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~------d~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+ ..+.+||+.+.+-...-...... -.+++. -++++++.|+. +.|.+||+.+.. ...+..+......
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCY 246 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcccc
Confidence 3 57899999887544321111111 112222 25677777764 258999997641 1222222211112
Q ss_pred eEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEE
Q 008393 501 FHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMT 534 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~ 534 (567)
...+. -++..++.|+.+ ..|.+||+.+.+...
T Consensus 247 ~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 247 VGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp CEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred eeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 22222 256666666655 368999998876553
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.84 E-value=0.032 Score=55.80 Aligned_cols=247 Identities=10% Similarity=0.169 Sum_probs=149.4
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.+..|.|.|+.++..+..-.-. --+...+|..+.||.=. ..++.|+|+++ +..+..+.- ...|.-=.|..+. .
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~-K~klks~~~-~e~VvfWkWis~~-~ 118 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN-T 118 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCCCEEEEEETT-E
T ss_pred CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHH-hhhhcceec-CCCceEEEecCCC-e
Confidence 3457889999876544222111 12345788887777765 67899999998 555666553 3456666665442 3
Q ss_pred EEEEEeCCCcEEEEECCC-CeeeEEEeCC-------eeEEEEecCCCEEEEEEC-------CCeEEEEECCCCeEEEEec
Q 008393 387 LICSCDGDGEIRYWSINN-GSCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~-~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 451 (567)
+.++. +..|+-|++.. ....+.|..+ +.....+++..+++..+- .|.+.+|..+.+..- .+.
T Consensus 119 l~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ie 195 (494)
T 1bpo_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE 195 (494)
T ss_dssp EEEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EEC
T ss_pred EEEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhe
Confidence 33232 67899999975 3455666532 333456777787776553 367889988876433 566
Q ss_pred CCCCCeeEEEEcCC---CCEEEEEeC---C-eEEEEeCCCC---CC--CceEEEee----cCCCceEEEEEeCCCCeEEE
Q 008393 452 GHTKPIDSVCWDPS---GELLASVSE---D-SVRVWTVGSG---SE--GECVHELS----CNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 452 ~h~~~V~~l~~sp~---g~~l~s~s~---d-~I~iwd~~~~---~~--~~~i~~~~----~~~~~i~~~~~sp~~~~l~~ 515 (567)
+|......+.+..+ ..+++.+.. + +++|.++... .. .+....+. ...+-..++.+++....++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 66544433333221 124555544 2 7899998543 11 01111111 12344667889999999999
Q ss_pred EEcCCeEEEEECCCCcEEEe-ccccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 516 IGCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
.+..|.|++||++++.++.. .-....|..-+......=++.....|.|
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999998732 3334455544444443344444455544
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.014 Score=67.31 Aligned_cols=271 Identities=13% Similarity=0.107 Sum_probs=145.8
Q ss_pred CCCeEEEEEcCC------CCeEEEEeC-CCcEEEEeCCCCeeeeeeccc-CccEEEEEEC--CCCCeEEEEeCCCcEEEE
Q 008393 287 TSKVICCHFSSD------GKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-SSLITDVRFS--PSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 287 ~~~V~~l~~s~d------g~~lasg~~-dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fs--p~~~~l~s~s~dg~I~iw 356 (567)
...|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....-. .....++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 568999999863 369999996 999999999987766543211 1233444332 234588999999998777
Q ss_pred EcCCC-CceeE---EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-Cee-EEEEecC--CCEEE
Q 008393 357 DADNP-GYSLR---TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTA-QMRFQPH--LGRYL 428 (567)
Q Consensus 357 d~~~~-~~~~~---~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-~~~-~~~~~~~--~~~l~ 428 (567)
.++.. +.... .+-| ..++.-..|...+..-++.++ +....+|.-...-....+.. .+. ...|+.. .+.++
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence 66531 22211 2223 344544444444444444444 44444444332211111111 122 2334432 23344
Q ss_pred EEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-------------------------------
Q 008393 429 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED------------------------------- 475 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------------------------------- 475 (567)
+..++.++|.-+.+. -.+.++. -...+..++++|+.+.++.+..+
T Consensus 711 -~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 -LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp -EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred -EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 344555888766432 2223333 23567778888876655443311
Q ss_pred -------------------eEEEEeCCCCCCCceEEEeecCCC-ceEEEE---EeCC-CCeEEEEE----------cCCe
Q 008393 476 -------------------SVRVWTVGSGSEGECVHELSCNGN-KFHSCV---FHPT-YPSLLVIG----------CYQS 521 (567)
Q Consensus 476 -------------------~I~iwd~~~~~~~~~i~~~~~~~~-~i~~~~---~sp~-~~~l~~~~----------~dg~ 521 (567)
.|+++|-.+. +.+..+..... .+.+++ |..+ ..+|++|+ ..|.
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2455555443 33333332222 233333 3222 46788876 2468
Q ss_pred EEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 522 LELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 522 I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++|++..++.. ......++|++++-- +|++|+.. ..+|++|+
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 999999755433 233457889998743 45444433 35788874
No 309
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.82 E-value=0.0079 Score=59.12 Aligned_cols=230 Identities=10% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec---ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~---~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
...+.+|.|++ +..++ ++..+.|.. ..+.++.-..+. .+...+..|.+.+++..++.+ .+|.| |.....+.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 44688899976 44444 455665543 233333322222 233457888887766655554 45644 32222233
Q ss_pred eeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEE-EEC--CCCeeeEE-EeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 364 SLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY-WSI--NNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 364 ~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~i-wd~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
... ....+...+..+.+.+++. +++.+ .+|.|.. +|- .+-+.+.. .......+.+.+++ .+++++.+|.+++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G~~~~ 229 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGGKIAF 229 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEEEEETTTEEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEEEEeCCceEEE
Confidence 222 2334566789999998865 45444 4555444 332 12222211 11245567777765 5667777888877
Q ss_pred EECCCCeEEEEecC----CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 439 LDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 439 ~d~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
.+...++.-..+.. +...+.++.+.+++.+++++..+.| ++....+.....+.........+..+.|.+++ .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 65333433222221 2235889999988888887765566 34444443322222111123457788887544 477
Q ss_pred EEEcCCeEEEEEC
Q 008393 515 VIGCYQSLELWNM 527 (567)
Q Consensus 515 ~~~~dg~I~iwd~ 527 (567)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 8888898877664
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.80 E-value=0.0001 Score=80.77 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=117.1
Q ss_pred CCeEEEEEcCCCCeEEEE-eCCCcEEEEeCCC----CeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCC
Q 008393 288 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNP 361 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg-~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~ 361 (567)
..+..++|++.+..|+.+ ...+.|..+++.. ......+.........|++.+.+..| ++-...+.|.+++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg- 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG- 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS-
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC-
Confidence 345688999876666655 3567899999875 22222222222335567887654444 4445578899999875
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC-CCeE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVV 436 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-dg~I 436 (567)
......+.........|++.|.+..|+++-... +.|.++++........+. .....+++++++++|+++.. .+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 332222332234567889998777676554333 678888876443322222 23467999998888777765 5789
Q ss_pred EEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 437 SILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
..+|+........+. ........|++..+ .++++.... .|..++..++
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 999987543332222 11223445666554 333343344 8999987665
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.76 E-value=0.0057 Score=59.31 Aligned_cols=224 Identities=9% Similarity=0.024 Sum_probs=115.3
Q ss_pred CeEEEEeC--CCcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC----CcEEEEEcCCCCceeE-Eecc
Q 008393 300 KLLATGGH--DKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLR-TFMG 370 (567)
Q Consensus 300 ~~lasg~~--dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d----g~I~iwd~~~~~~~~~-~~~~ 370 (567)
.+++.|+. ...+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||+.+...... .+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 36788999887654322 2211122222222 56677777754 5688899887432211 1111
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEEeC--C--eeEEEEecCCCEEEEEEC--------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--G--TAQMRFQPHLGRYLAAAA-------- 432 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~-------- 432 (567)
.......+.+ ++.+++.|+.+ ..+.+||+.+.+....-.. . ...+.. .++..++.++.
T Consensus 91 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111122222 34577677755 4689999998875443211 1 111222 23344444443
Q ss_pred -CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC------CeEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 433 -ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 433 -dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
...+.+||+.+.+-...-...... -.+++.. ++++++.|+. +.+.+||+.+.. ...+..+.........+
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEE
Confidence 356899999887543321111111 1223332 5667776653 258899987641 12222222112222222
Q ss_pred EEeCCCCeEEEEEcC-----CeEEEEECCCCcEE
Q 008393 505 VFHPTYPSLLVIGCY-----QSLELWNMSENKTM 533 (567)
Q Consensus 505 ~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~ 533 (567)
.+ ++..+++|+.+ ..+.+||+.+.+..
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 33 56667777644 47999999988755
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.74 E-value=0.036 Score=53.38 Aligned_cols=234 Identities=11% Similarity=0.165 Sum_probs=157.2
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+.-.+|..+.+|.-. ...+.|||+++...+..+.-. ..|.-=.|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 345588888887765 688999999998888777654 456666776544 444444 3459999998766777777665
Q ss_pred C----CcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCeeEEE-EecCC----CEEEEEEC----
Q 008393 372 S----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA---- 432 (567)
Q Consensus 372 ~----~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~---- 432 (567)
. ..|.....+++.+.++++|- -.|.+.+|..+.+ ....++++..+.. +..++ ..+++-+.
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 56777888898888877664 2467888888754 3445566555543 32222 23333332
Q ss_pred CCeEEEEECCCC--------e-EEEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 433 ENVVSILDAETQ--------A-CRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 433 dg~I~i~d~~~~--------~-~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
.+.++|.++... + .+..+.. -.+--.++..++.-.+++..+.- .|++||++++ .++..-+....
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS~d 302 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 302 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccCCC
Confidence 258899987432 1 1111211 12334577888877788888877 9999999988 78888887778
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.|...+.+....-+++....|.|.-..+++...+
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred ceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 8776666666566777778888877777766544
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.72 E-value=0.015 Score=57.79 Aligned_cols=230 Identities=12% Similarity=0.106 Sum_probs=125.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEE----eccCCCcEEEEEEcCC---CCeEEEEEeC-------C
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRT----FMGHSASVMSLDFHPN---KDDLICSCDG-------D 394 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~----~~~h~~~V~~l~~~p~---~~~li~s~~~-------d 394 (567)
...+.|+|.|+++.|+++...|.|++++.+.... .+.. +.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3468999999998455666789999998542100 1111 1112345789999996 5556655433 2
Q ss_pred CcEEEEECCCC--e--eeE-EEeC---------CeeEEEEecCCCEEEEEECC--------------CeEEEEECCCC--
Q 008393 395 GEIRYWSINNG--S--CTR-VFKG---------GTAQMRFQPHLGRYLAAAAE--------------NVVSILDAETQ-- 444 (567)
Q Consensus 395 g~I~iwd~~~~--~--~~~-~~~~---------~~~~~~~~~~~~~l~~~~~d--------------g~I~i~d~~~~-- 444 (567)
..|..|++... . ... .+.. ....+.|.|++ .|+++..+ +.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35777776543 1 111 1211 13468999987 55554432 46777776532
Q ss_pred ------------eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC--eEEEEeCCCCCC----------------------
Q 008393 445 ------------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED--SVRVWTVGSGSE---------------------- 487 (567)
Q Consensus 445 ------------~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d--~I~iwd~~~~~~---------------------- 487 (567)
..+.. .++ .....++|++ +|.++++-... .=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 223 3357899999 66655543321 112222222111
Q ss_pred ------CceEEEeecCCCceEEEEEeC-------CCCeEEEEEcCCeEEEEECCCCcEE---Eec-cccCCeeEEEEecC
Q 008393 488 ------GECVHELSCNGNKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM---TLT-AHEGLIAALAVSTE 550 (567)
Q Consensus 488 ------~~~i~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-~h~~~V~~l~~spd 550 (567)
...+..+. +......++|.. ++.++++.-..+.|...++..++.. .+. .....+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 01111121 223456677764 4555555555678888888765433 222 22357899999999
Q ss_pred CCEEEEEE-CCCcE
Q 008393 551 TGYVASAS-HDKFV 563 (567)
Q Consensus 551 g~~l~s~s-~Dg~I 563 (567)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98766543 34544
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.72 E-value=0.023 Score=56.23 Aligned_cols=189 Identities=14% Similarity=0.133 Sum_probs=114.5
Q ss_pred EEEEEcCCCCeEEEEe------------CCCcEEEEeCCC--Ceee-eeecc-----cCccEEEEEECC--CCC-eEEEE
Q 008393 291 ICCHFSSDGKLLATGG------------HDKKAVLWHTDT--LKSK-TNLEE-----HSSLITDVRFSP--SMP-RLATS 347 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~------------~dg~I~vwd~~~--~~~~-~~l~~-----h~~~V~~i~fsp--~~~-~l~s~ 347 (567)
-.+++.++|..+++++ .+|.|.++|.++ .+.. ..+.+ .......|.+.+ ++. +|+++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 3667788875555542 689999999873 2221 12222 223566677655 454 45555
Q ss_pred eC---CCcEEEEEcCCCCce---eEEeccC-CCcEEEEEEcCCCCeEEEEEe-----------------CCCcEEEEECC
Q 008393 348 SF---DKTVRVWDADNPGYS---LRTFMGH-SASVMSLDFHPNKDDLICSCD-----------------GDGEIRYWSIN 403 (567)
Q Consensus 348 s~---dg~I~iwd~~~~~~~---~~~~~~h-~~~V~~l~~~p~~~~li~s~~-----------------~dg~I~iwd~~ 403 (567)
.. +..|.+|+++..+.. +..+.+. -...+.+.+.++|. ++++.. ..|.|..+|..
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 32 467888888764332 2333332 24678999999875 443543 12456666653
Q ss_pred CCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCC-CeE--EEEecCCCCCeeEEEEcC-CCCEEEEEeCC-
Q 008393 404 NGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDP-SGELLASVSED- 475 (567)
Q Consensus 404 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~-~~~--~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d- 475 (567)
+...... ...+.++|+|++..++++.. .+.|..|++.. ++. ...+ ........+++++ +|++.+++..+
T Consensus 212 --~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 --DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp --CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred --eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 3322222 35688999999988888775 68999999863 322 2233 2245677899999 59988877645
Q ss_pred -eEEEEeCC
Q 008393 476 -SVRVWTVG 483 (567)
Q Consensus 476 -~I~iwd~~ 483 (567)
.|..|+..
T Consensus 289 ~~v~~~~P~ 297 (355)
T 3sre_A 289 MRIFFYDAE 297 (355)
T ss_dssp HHHHSCCTT
T ss_pred eEEEEECCC
Confidence 55555544
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.72 E-value=0.016 Score=57.57 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee---e----cccCccEEEEEECCC---CCeEEEEeC--------
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---L----EEHSSLITDVRFSPS---MPRLATSSF-------- 349 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~---l----~~h~~~V~~i~fsp~---~~~l~s~s~-------- 349 (567)
.....|+|.|||++|+++...|.|++++.+ ++.... + .........|+|+|+ +.+|+.+..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 345799999999844455578999999854 332211 1 112345789999996 555555432
Q ss_pred CCcEEEEEcCCCCc---eeE-Eecc------CCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCCe
Q 008393 350 DKTVRVWDADNPGY---SLR-TFMG------HSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNGS 406 (567)
Q Consensus 350 dg~I~iwd~~~~~~---~~~-~~~~------h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~~ 406 (567)
...|..|+++.... ... .+.. .......|.|.|+|. |+++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 23566777654211 111 1111 111235799999984 5545433 2467777765320
Q ss_pred ------------eeEEEe---CCeeEEEEecCCCEEEEEECCC----eEEEEECC--------C----------------
Q 008393 407 ------------CTRVFK---GGTAQMRFQPHLGRYLAAAAEN----VVSILDAE--------T---------------- 443 (567)
Q Consensus 407 ------------~~~~~~---~~~~~~~~~~~~~~l~~~~~dg----~I~i~d~~--------~---------------- 443 (567)
....+. .....++|.+..+.++++.... .|.+.... .
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 112222 1356788999667777665431 23221100 0
Q ss_pred -----CeEEEEecCCCCCeeEEEEcC-------CCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-ecCCCceEEEEEeCC
Q 008393 444 -----QACRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPT 509 (567)
Q Consensus 444 -----~~~~~~~~~h~~~V~~l~~sp-------~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~~sp~ 509 (567)
..++..+.. ......++|.. +|.++++.... .|...++..+.. .....+ ......+..+++.|+
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-TEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-eeeEEcccCCCCceeEEEECCC
Confidence 011122222 23566788864 46676666555 888888764311 111122 223457889999999
Q ss_pred CCeEEE
Q 008393 510 YPSLLV 515 (567)
Q Consensus 510 ~~~l~~ 515 (567)
|..+++
T Consensus 334 G~lyv~ 339 (353)
T 2g8s_A 334 GYLYVL 339 (353)
T ss_dssp SCEEEE
T ss_pred CcEEEE
Confidence 984443
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.68 E-value=0.051 Score=53.50 Aligned_cols=226 Identities=13% Similarity=0.113 Sum_probs=125.8
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEe----ccCCCcEEEEEEcCC---CCeEEEEE--eCCCcE
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTF----MGHSASVMSLDFHPN---KDDLICSC--DGDGEI 397 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~----~~h~~~V~~l~~~p~---~~~li~s~--~~dg~I 397 (567)
.-..-+.|+|.|+|.++++--..|.|++++..+... .+..+ .........|+|+|+ +..++++- ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344578999999998766665589999998654222 12111 123466899999995 34454432 245567
Q ss_pred EEEECCCC----------eee-EEEeC----CeeEEEEecCCCEEEEEEC-------------CCeEEEEECCCC-----
Q 008393 398 RYWSINNG----------SCT-RVFKG----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ----- 444 (567)
Q Consensus 398 ~iwd~~~~----------~~~-~~~~~----~~~~~~~~~~~~~l~~~~~-------------dg~I~i~d~~~~----- 444 (567)
.-|.+..+ +.+ ..+.. ....+.|.|++..+++.+. .+.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 77766542 111 11221 2356899999866666442 356666665432
Q ss_pred ----eEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C---eEEEEeCCCCCC---------------CceEEEeecCCCce
Q 008393 445 ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSE---------------GECVHELSCNGNKF 501 (567)
Q Consensus 445 ----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d---~I~iwd~~~~~~---------------~~~i~~~~~~~~~i 501 (567)
..+. -.+|.. ...++|+|+|.++++-.. + .|.+. ..+.. ...+..+..+....
T Consensus 190 Pf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 190 PFPGSPVY-SYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp SSTTCCEE-EBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCeEE-eeCCCC-cceEEECCCCCEEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 1121 224433 457999999887665432 2 34333 22211 11122222222345
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcE----E-EeccccCCeeEEEEecCCCEEEEEE
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKT----M-TLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~----~-~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
..++|.. +..++..-..+.|....+..... . .+.+..+.+..|+..|||.++++..
T Consensus 266 ~G~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5667763 44333333445676666655432 1 2334456799999999998776654
No 317
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.0059 Score=63.16 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=97.8
Q ss_pred cEEEEEEcC-CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC------eeEEEE-------ecCCCEEEEEECCC-----
Q 008393 374 SVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------TAQMRF-------QPHLGRYLAAAAEN----- 434 (567)
Q Consensus 374 ~V~~l~~~p-~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~------~~~~~~-------~~~~~~l~~~~~dg----- 434 (567)
....|+|.| +...|+++....+.|++.|+.++......... ...++| ++++..++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 45667766655578999999998877665442 577889 99998787777654
Q ss_pred --eEEEEECCC-CeEE-----EEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCC-------CCCC----------
Q 008393 435 --VVSILDAET-QACR-----LSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVG-------SGSE---------- 487 (567)
Q Consensus 435 --~I~i~d~~~-~~~~-----~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~-------~~~~---------- 487 (567)
.|.+++... +... ..+... .....++++|++..|+.+. .+ .|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 1110 111111 2345788999555455444 44 89999997 4432
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECC
Q 008393 488 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 528 (567)
Q Consensus 488 -~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 528 (567)
...+..+ ........++|+|++++|+++.. ...|+.++..
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0122222 22344678999999997776654 4688886653
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.60 E-value=0.073 Score=53.30 Aligned_cols=234 Identities=11% Similarity=0.178 Sum_probs=156.9
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+.-.+|..+.+|.-. ...+.|||+++...+..+.-... |..=.|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 455677777777765 78999999999888877765444 4444554333 454444 4459999998756677777665
Q ss_pred C----CcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCeeEEE-EecCC----CEEEEEEC----
Q 008393 372 S----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA---- 432 (567)
Q Consensus 372 ~----~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~---- 432 (567)
. ..|.....+++.+.++++|- -.|.+.+|..+.+. ...+.++..+.. +..++ ..+++-+.
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 56778888999888877664 24678888887543 344555554443 32222 22333333
Q ss_pred CCeEEEEECCCC--------eEEEEe-cC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 433 ENVVSILDAETQ--------ACRLSL-QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 433 dg~I~i~d~~~~--------~~~~~~-~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
.+.++|.++... +....+ .. -.+--.++..++.-.+++..+.- .|++||++++ .++..-.....
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~ 301 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 301 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCC
Confidence 278999988542 111111 11 12334578888877788888877 9999999988 78888777778
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.|...+.+....-++.....|.|.-..+.+...+
T Consensus 302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 8777777776666888888888877777766544
No 319
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.58 E-value=0.039 Score=53.34 Aligned_cols=234 Identities=6% Similarity=-0.041 Sum_probs=136.2
Q ss_pred cCCCCeEEEEe--CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC--------------CcEEEEEcC
Q 008393 296 SSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--------------KTVRVWDAD 359 (567)
Q Consensus 296 s~dg~~lasg~--~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d--------------g~I~iwd~~ 359 (567)
+.+|.+|+... .++.|...+.+... ...+... .+--|++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34666666654 35667666664333 3333322 133457888888777543 357777777
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEE---eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEEC-CCe
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-ENV 435 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~---~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~ 435 (567)
... ...+... . +..|+++++.++++- ..+..|+..++......+...... ..++++++.|+.... ...
T Consensus 97 g~~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 97 GHG--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp SCC--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCC
T ss_pred CCc--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCce
Confidence 533 2333222 1 235667788887665 345567777777555444444433 456788888887766 578
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
|...++..+.....+.+ ... ..+.|++.+|+....+ .|..-++..... .. +. ...+ ..|+|++.+
T Consensus 169 Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~---Lt--~~~~--~~~~~~g~~ 236 (302)
T 3s25_A 169 LYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VV---LT--EANI--EHYNVYGSL 236 (302)
T ss_dssp EEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EE---CS--CSCE--EEEEEETTE
T ss_pred EEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EE---Ee--CCCc--ceEEECCCE
Confidence 99999887765544432 222 3466888888877643 576777765422 21 21 1223 348888998
Q ss_pred EEEEEc--CCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 513 LLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 513 l~~~~~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
|+.+.. .+.|+..++.......+... .+.. +++.+.+|+-..
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~--i~i~~d~Iy~td 280 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKELAKG--EFCN--INVTSQYVYFTD 280 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEEEEES--CEEE--EEECSSEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCCccEEeeCC--ccce--EEEeCCEEEEEE
Confidence 887643 35888888877654433322 2333 344555555443
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.54 E-value=0.009 Score=57.75 Aligned_cols=225 Identities=15% Similarity=0.097 Sum_probs=113.1
Q ss_pred CCeEEEEeCC----CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~d----g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~ 367 (567)
+.+++.|+.+ ..+.+||..+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+... ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW--TS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE--EE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCce--ee
Confidence 3455666643 4688888887654332 1111111122222 56677777654 3588899876332 22
Q ss_pred ecc---CCCcEEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEEEeC--Ce--eEEEEecCCCEEEEEEC---
Q 008393 368 FMG---HSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKG--GT--AQMRFQPHLGRYLAAAA--- 432 (567)
Q Consensus 368 ~~~---h~~~V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~--- 432 (567)
+.. ..... +++.. ++.+++.|+.++ .+.+||+.+.+....-.. .. ..+.. .++..++.++.
T Consensus 92 ~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 92 VANMRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVA 167 (302)
T ss_dssp ECCCSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred CCCCCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence 221 11111 22222 245666776553 578899988765543211 11 11222 23344444443
Q ss_pred ----CCeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 433 ----ENVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 433 ----dg~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
...+.+||+.+.+-...-..... .-.+++. -++++++.|+.+ .+.+||+.+. ....+..+.......
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNA 245 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC-CEeeCCCCCCccccC
Confidence 24689999988754432111111 1122322 256777777642 5889998764 112222221111111
Q ss_pred EEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEe
Q 008393 502 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTL 535 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~ 535 (567)
. ++ .-++..++.|+.++ .|.+||+.+.+...+
T Consensus 246 ~-~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 G-VC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp E-EE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred e-EE-EECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2 22 22566666666553 599999998876654
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.53 E-value=0.068 Score=52.61 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=123.7
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eee----cccCccEEEEEECCC---CCeEEEE---eC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL----EEHSSLITDVRFSPS---MPRLATS---SF 349 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l----~~h~~~V~~i~fsp~---~~~l~s~---s~ 349 (567)
.+...-..-+.|+|.|||++|++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33334456679999999997777655899999987655432 222 123456899999995 4455443 23
Q ss_pred CCcEEEEEcCCC---------Cce-eEEec-cCCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC
Q 008393 350 DKTVRVWDADNP---------GYS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG 405 (567)
Q Consensus 350 dg~I~iwd~~~~---------~~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~ 405 (567)
++.|.-|.+... .+. +..+. ........|.|.|+|. |+++.+. .|.|.-.+....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 456766766541 111 11221 1112345799999986 4445332 355555555432
Q ss_pred e-------eeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCC------------------eEEEEecCCCC
Q 008393 406 S-------CTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQ------------------ACRLSLQGHTK 455 (567)
Q Consensus 406 ~-------~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~------------------~~~~~~~~h~~ 455 (567)
- ....+.. ....++|+|+ +.++++-. ++.-.|.-+..+ .++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 0112221 2456889986 44554443 221122111111 11222222223
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC-CceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
....|+|. +|.+++..-.. .|....+..... .+....+......+..+++.|||..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 45667776 46666655555 676666654321 11222233344678888999988654443
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.51 E-value=0.24 Score=57.02 Aligned_cols=271 Identities=10% Similarity=0.034 Sum_probs=146.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCc-
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGY- 363 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~- 363 (567)
+.+|.-..|...|..-+.+..+.-..+|... ++....--.-...-....|+.. ..-++..+ ++.++|..+++...
T Consensus 651 ~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~ 728 (1158)
T 3ei3_A 651 TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKL 728 (1158)
T ss_dssp SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSE
T ss_pred CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCe
Confidence 3455544554444433333335555555433 3332221111112234455432 12344333 45599998865322
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeC------------------------------------------------CC
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDG------------------------------------------------DG 395 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~------------------------------------------------dg 395 (567)
.++.+. -...+..++++|..+.+++.++. -+
T Consensus 729 ~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s 807 (1158)
T 3ei3_A 729 HIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVH 807 (1158)
T ss_dssp EEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEE
T ss_pred eEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeE
Confidence 233332 44678888888876655443321 02
Q ss_pred cEEEEECCCCeeeEEEeCC----eeEEE---EecC-CCEEEEEEC----------CCeEEEEECCCCeEEEEe-cCCCCC
Q 008393 396 EIRYWSINNGSCTRVFKGG----TAQMR---FQPH-LGRYLAAAA----------ENVVSILDAETQACRLSL-QGHTKP 456 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~----~~~~~---~~~~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~-~~h~~~ 456 (567)
.|++.|..+.+.+..+.-. +.+++ |..+ ..++++|+. .|.|.+|++..++..... ...+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 3667777777666554421 22222 3222 356777762 478999998654332222 124678
Q ss_pred eeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEE
Q 008393 457 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMT 534 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~ 534 (567)
|++++-- +| +|+++-..+|++|++...+... ....... .+..+.....++++++|.....|.++ +...++...
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 8888754 34 5555555689999996543212 1111111 12233344457889999988877665 444555443
Q ss_pred e--ccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 535 L--TAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 535 ~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+ ..+..+++++.|-.+ ..++.+..+|.|.+.
T Consensus 963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 3 345567888888655 467778889988875
No 323
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.49 E-value=0.0084 Score=58.15 Aligned_cols=195 Identities=8% Similarity=0.012 Sum_probs=116.6
Q ss_pred CCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-------------CcEEEEECC
Q 008393 339 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------GEIRYWSIN 403 (567)
Q Consensus 339 p~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-------------g~I~iwd~~ 403 (567)
.++.+|+.... ++.|...+.+. .....+... . +--++++++.++++...+ ..|+..++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 45666666542 45555555543 333333321 1 234577888888776654 468888888
Q ss_pred CCeeeEEEeCCeeEEEEecCCCEEEEEE----CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eE
Q 008393 404 NGSCTRVFKGGTAQMRFQPHLGRYLAAA----AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SV 477 (567)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I 477 (567)
..+........ ...++++++.++... ....|+..++...... .+..+.. ..|+++++.|+..+.+ .|
T Consensus 97 g~~~~~l~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 97 GHGSTVLDPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp SCCCEEEECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred CCcceEeecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 77644443333 336778888888876 2457777787754433 3333322 4567788888877764 88
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC--CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
.+.++..+.. +.+ +. .... ..++|++.+|+..... ..|+.-++.......+... .+ ..|+|++++|.
T Consensus 170 y~~~l~g~~~-~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy 238 (302)
T 3s25_A 170 YRYDTASQSE-ALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIF 238 (302)
T ss_dssp EEEETTTTEE-EEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEE
T ss_pred EEEECCCCCE-EEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEE
Confidence 8888865421 222 21 2222 3466999999887654 3788888887765554422 22 33666676665
Q ss_pred EE
Q 008393 556 SA 557 (567)
Q Consensus 556 s~ 557 (567)
-+
T Consensus 239 ~~ 240 (302)
T 3s25_A 239 YQ 240 (302)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.46 E-value=0.0093 Score=59.63 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=88.0
Q ss_pred CCeEEEEECCCCeEEEEecCC----CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCC---------ceEEEeec---
Q 008393 433 ENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG---------ECVHELSC--- 496 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~---------~~i~~~~~--- 496 (567)
++.|+.-++......+.++.. -..|..+..+|+|++||..+...|.|..+..+... .....+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 456666665533222222221 23678899999999999999889999998733210 11223332
Q ss_pred ---CCCceEEEEEeCC---CCeEEEEEcCCeEEEEECCCCcE--E---------EeccccCCeeEEEEecCCCEEEEEE-
Q 008393 497 ---NGNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENKT--M---------TLTAHEGLIAALAVSTETGYVASAS- 558 (567)
Q Consensus 497 ---~~~~i~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~~--~---------~~~~h~~~V~~l~~spdg~~l~s~s- 558 (567)
...+|..+.|||- +..|++-..|+.|++||+..... . ........|.+++|..++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 2467999999995 46899999999999999986321 1 1122336789999999876666644
Q ss_pred -CCCcEE
Q 008393 559 -HDKFVK 564 (567)
Q Consensus 559 -~Dg~I~ 564 (567)
..|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 777775
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.40 E-value=0.015 Score=56.21 Aligned_cols=206 Identities=11% Similarity=0.082 Sum_probs=105.7
Q ss_pred eEEEEeC--CCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeEEEeC
Q 008393 343 RLATSSF--DKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 343 ~l~s~s~--dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~d----g~I~iwd~~~~~~~~~~~~ 413 (567)
+++.|+. ...+.+||..+... ..+. ........+.+ ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSW--TDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEE--EECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCCCceEEEecCCCCCE--ecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 4555654 35688999886332 2221 11111122222 34577677754 6789999998875544221
Q ss_pred C----eeEEEEecCCCEEEEEECC------CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEe---------
Q 008393 414 G----TAQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS--------- 473 (567)
Q Consensus 414 ~----~~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s--------- 473 (567)
. ...++ ..++..++.++.+ ..+.+||..+.+-...-...... -.+++. -++++++.|+
T Consensus 89 p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 89 PTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred CccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1 11122 2244455555544 46999999887543321111111 112222 3566666665
Q ss_pred -CCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEecccc---CCeeE
Q 008393 474 -EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHE---GLIAA 544 (567)
Q Consensus 474 -~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~---~~V~~ 544 (567)
.+.+.+||+.+. ....+..+...... .+++.. +++.++.|+.+ ..+.+||+.+.+...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~-~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATE-TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTT-EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCC-eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 235889998764 11222222111111 122222 55666666543 47899999988766443221 12222
Q ss_pred EEEecCCCEEEEEECC
Q 008393 545 LAVSTETGYVASASHD 560 (567)
Q Consensus 545 l~~spdg~~l~s~s~D 560 (567)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 333 67788888865
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.37 E-value=0.0072 Score=58.37 Aligned_cols=209 Identities=13% Similarity=0.055 Sum_probs=104.3
Q ss_pred CCeEEEEe-CC-----CcEEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCe
Q 008393 341 MPRLATSS-FD-----KTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGS 406 (567)
Q Consensus 341 ~~~l~s~s-~d-----g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~ 406 (567)
+.+++.|+ .+ ..+.+||+.+... ..+.. ..... +++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEW--SFLPSITRKRRYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEE--EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeE--EeCCCCChhhccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 34555555 22 3588888876322 22211 11111 22222 34577677754 469999998876
Q ss_pred ---eeEEEe--CC--eeEEEEecCCCEEEEEEC-----CCeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEE
Q 008393 407 ---CTRVFK--GG--TAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 407 ---~~~~~~--~~--~~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~ 472 (567)
....-. .. ...+.. .++..++.++. ...+.+||+.+.+-.. .+...... .+++. -++++++.|
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~G 166 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLG 166 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEEC
T ss_pred CCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEEC
Confidence 433321 11 111222 23444444443 2478999988865332 22211111 22222 266777776
Q ss_pred eC------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccC-
Q 008393 473 SE------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEG- 540 (567)
Q Consensus 473 s~------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~- 540 (567)
+. +.+.+||+.+. ....+..+.........+. -++..++.|+.+ ..|.+||+.+.+...+.....
T Consensus 167 G~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp CBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 53 25889998764 1122222221111112222 255666666654 479999999887665432211
Q ss_pred -CeeEEEEecCCCEEEEEECCC
Q 008393 541 -LIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 541 -~V~~l~~spdg~~l~s~s~Dg 561 (567)
.-.+++ .-++++++.|+.++
T Consensus 244 r~~~~~~-~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 244 RCYVGAT-VLRGRLYAIAGYDG 264 (301)
T ss_dssp CBSCEEE-EETTEEEEECCBCS
T ss_pred ccceeEE-EECCEEEEEcCcCC
Confidence 111222 23677777777653
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.35 E-value=0.0087 Score=58.12 Aligned_cols=227 Identities=10% Similarity=0.023 Sum_probs=114.1
Q ss_pred CCCCeEEEEeCC----CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeC----C-----CcEEEEEcCCC
Q 008393 297 SDGKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF----D-----KTVRVWDADNP 361 (567)
Q Consensus 297 ~dg~~lasg~~d----g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~----d-----g~I~iwd~~~~ 361 (567)
-++.+++.|+.+ ..+.+||..+.+.... +......-..+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355677777642 4688999887654332 1111111122222 5666666665 2 45888998763
Q ss_pred CceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEe--CC--eeEEEEecCCCEEEE
Q 008393 362 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GG--TAQMRFQPHLGRYLA 429 (567)
Q Consensus 362 ~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~ 429 (567)
.. ..+. ........+.+ + ..+++.|+.+ ..+.+||+.+.+....-. .. ...+... ++..++.
T Consensus 101 ~W--~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~ 174 (308)
T 1zgk_A 101 QW--SPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAV 174 (308)
T ss_dssp EE--EECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE
T ss_pred eE--eECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEE
Confidence 22 2221 11111122222 3 4566666543 468899998876543321 11 1112222 4444455
Q ss_pred EECC-----CeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeC------CeEEEEeCCCCCCCceEEEeecC
Q 008393 430 AAAE-----NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 430 ~~~d-----g~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~------d~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
++.+ ..+.+||+.+.+-...-..... .-.+++.. ++++++.|+. +.+.+||+.+.. ...+..+...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 252 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR 252 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC
Confidence 5443 5689999988754322111111 11222222 6677777754 258999987641 1112112111
Q ss_pred CCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEe
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTL 535 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~ 535 (567)
..... ++. -++..++.|+.+ ..|.+||+.+.+...+
T Consensus 253 r~~~~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 253 RSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ccceE-EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 11122 222 256666666643 4789999988776543
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.31 E-value=0.037 Score=53.75 Aligned_cols=225 Identities=8% Similarity=0.017 Sum_probs=113.6
Q ss_pred eEEEEeCCCcEEEEeCCCCeeee-eecccCccEEEEEECCCCCeEEEEeC----C-------CcEEEEEcCCCCceeEEe
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF----D-------KTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~----d-------g~I~iwd~~~~~~~~~~~ 368 (567)
+++.|+ ..+.+||..+.+-.. .+..........+...++..++.|+. + ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 678999998877543 12212222333334457778888873 1 1277888876322 222
Q ss_pred ccCCCcE--EEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeEEEe--CCe-eEEEEecCCCEEEEEEC---
Q 008393 369 MGHSASV--MSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA--- 432 (567)
Q Consensus 369 ~~h~~~V--~~l~~~p~~~~li~s~~~d--------g~I~iwd~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~--- 432 (567)
.....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+....-. ... ...+...++..++.++.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence 2111111 122222 35666677632 468999998876443221 111 11112233444555554
Q ss_pred ---CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 433 ---ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 433 ---dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
-+.+.+||+.+.+-...-...... -.+++. -++++++.|+.+ .+.+||+.+. ....+..+.......
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~- 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSL- 237 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccce-
Confidence 247999999887543221111111 122222 266777777643 4888998764 112222221111112
Q ss_pred EEEEeCCCCeEEEEEcC--------------CeEEEEECCCCcEEEe
Q 008393 503 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL 535 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 535 (567)
+++. -++..++.|+.+ ..|.+||+.+.+...+
T Consensus 238 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2222 255666667653 2588999988876544
No 329
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=97.25 E-value=4.6e-05 Score=79.04 Aligned_cols=6 Identities=33% Similarity=0.252 Sum_probs=2.7
Q ss_pred CCHHHH
Q 008393 2 LTPQHQ 7 (567)
Q Consensus 2 ~~~~~~ 7 (567)
+++..|
T Consensus 285 ~s~e~~ 290 (449)
T 3iot_A 285 LTDEGL 290 (449)
T ss_dssp SSHHHH
T ss_pred cCHHHH
Confidence 345533
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.24 E-value=0.025 Score=54.54 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=104.2
Q ss_pred eEEEEeCC----CcEEEEEcCCCCceeEEeccCCCc--EEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEE
Q 008393 343 RLATSSFD----KTVRVWDADNPGYSLRTFMGHSAS--VMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVF 411 (567)
Q Consensus 343 ~l~s~s~d----g~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~ 411 (567)
+++.|+.+ ..+.+||+.+... ..+...... -.+++.. ++.+++.|+.+ ..+.+||..+.+....-
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 44445432 3478888876322 222111110 1122222 35577677654 35889999887755432
Q ss_pred eCC----eeEEEEecCCCEEEEEECC-----CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC-------
Q 008393 412 KGG----TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE------- 474 (567)
Q Consensus 412 ~~~----~~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~------- 474 (567)
... ...++. .++..++.++.+ ..+.+||+.+.+-...-...... -.+++. -++++++.|+.
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcc
Confidence 211 111222 244555666654 36889999887544321111111 122222 25666666653
Q ss_pred -CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC--eeEEE
Q 008393 475 -DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAALA 546 (567)
Q Consensus 475 -d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~--V~~l~ 546 (567)
+.+.+||+.+.. ...+..+....... +++. -++..++.|+.+ ..+.+||+.+.+...+...... -.+++
T Consensus 172 ~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNE-WTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCc-EEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 258899987641 12222222111112 2222 256666666654 3799999998876654322211 11222
Q ss_pred EecCCCEEEEEECCC
Q 008393 547 VSTETGYVASASHDK 561 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg 561 (567)
.-++++++.|+.++
T Consensus 249 -~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 249 -AVNGLLYVVGGDDG 262 (302)
T ss_dssp -EETTEEEEECCBCS
T ss_pred -EECCEEEEECCcCC
Confidence 23677778887654
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.15 E-value=0.089 Score=51.04 Aligned_cols=224 Identities=11% Similarity=0.048 Sum_probs=110.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeee-ecccCccEEEEEECCCCCeEEEEeC----CC-------cEEEEEcCCCCceeEEe
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSF----DK-------TVRVWDADNPGYSLRTF 368 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~-l~~h~~~V~~i~fsp~~~~l~s~s~----dg-------~I~iwd~~~~~~~~~~~ 368 (567)
+++.|+. .+.+||..+.+.... +..........+...++..++.|+. ++ .+.+||..+... ..+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EEC
Confidence 4444543 478899887765441 1111122223333456778888873 12 167788876322 222
Q ss_pred ccCCC--cEEEEEEcCCCCeEEEEEeCC-------CcEEEEECCCCeeeEEEeC--Ce--eEEEEecCCCEEEEEEC---
Q 008393 369 MGHSA--SVMSLDFHPNKDDLICSCDGD-------GEIRYWSINNGSCTRVFKG--GT--AQMRFQPHLGRYLAAAA--- 432 (567)
Q Consensus 369 ~~h~~--~V~~l~~~p~~~~li~s~~~d-------g~I~iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~--- 432 (567)
..... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+....-.. .. ..+.. .++..++.++.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDD 170 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESS
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCC
Confidence 11111 11122222 34566677654 3588899988765543211 11 11122 34444455543
Q ss_pred ---CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 433 ---ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 433 ---dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
.+.+.+||+.+.+-...-...... -.+++. -++++++.|+.+ .+.+||+.+.. ...+..+.......
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~- 247 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSI- 247 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSC-
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccce-
Confidence 246999999887543321111111 122333 256777777532 47789987642 12222222111111
Q ss_pred EEEEeCCCCeEEEEEcC--------------CeEEEEECCCCcEEEe
Q 008393 503 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL 535 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 535 (567)
+++ .-++..++.|+.+ ..|.+||+.+.+...+
T Consensus 248 ~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 2345666666543 4688999988776644
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.12 E-value=0.024 Score=56.22 Aligned_cols=227 Identities=10% Similarity=0.003 Sum_probs=112.9
Q ss_pred CCCeEEEEeCC-CcEEEEeCCC--Ce--eeeeec-ccCccEEEEEECCCCCeEEEEeC-C---------CcEEEEEcCCC
Q 008393 298 DGKLLATGGHD-KKAVLWHTDT--LK--SKTNLE-EHSSLITDVRFSPSMPRLATSSF-D---------KTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~~d-g~I~vwd~~~--~~--~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~-d---------g~I~iwd~~~~ 361 (567)
++++++.|+.+ ..+.+||..+ .+ .+..+. .....-.++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66677777643 5788999864 22 222222 11112222223 4666677665 2 45889998863
Q ss_pred CceeEEecc---C-CCcEEEEEEcCCCCeEEEEEeCC---------------------------------------CcEE
Q 008393 362 GYSLRTFMG---H-SASVMSLDFHPNKDDLICSCDGD---------------------------------------GEIR 398 (567)
Q Consensus 362 ~~~~~~~~~---h-~~~V~~l~~~p~~~~li~s~~~d---------------------------------------g~I~ 398 (567)
.. ..+.. . .....++. . ++.+++.|+.+ ..+.
T Consensus 97 ~W--~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 97 SW--VKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp EE--EECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred cE--EECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 32 22211 1 11122222 2 35677777754 5799
Q ss_pred EEECCCCeeeEEEeCC----e-eEEEEecCCCEEEEEEC------CCeEEEEEC--CCCeEEE--EecCCCCCeeEEEEc
Q 008393 399 YWSINNGSCTRVFKGG----T-AQMRFQPHLGRYLAAAA------ENVVSILDA--ETQACRL--SLQGHTKPIDSVCWD 463 (567)
Q Consensus 399 iwd~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~~~~------dg~I~i~d~--~~~~~~~--~~~~h~~~V~~l~~s 463 (567)
+||+.+.+....-... . ..++. .++..++.++. ...+.+||+ .+.+-.. .+..........+..
T Consensus 172 ~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 172 SFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred EEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 9999987755443211 1 12222 23344444442 346778887 4433221 121111111221223
Q ss_pred CCCCEEEEEeC-----------------------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 464 PSGELLASVSE-----------------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 464 p~g~~l~s~s~-----------------------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
.++++++.|+. ..+.+||+.+. ....+..+........ ++..+++.++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYGV--SLPWNNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSE--EEEETTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCcccce--eEEeCCEEEEEeeeCC
Confidence 35677777662 14778998764 2334444333222222 2334677778888653
Q ss_pred ------eEEEEECCCCcEEEe
Q 008393 521 ------SLELWNMSENKTMTL 535 (567)
Q Consensus 521 ------~I~iwd~~~~~~~~~ 535 (567)
.|.++++++++.+..
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCEeeeEEEEEEcCcEeEee
Confidence 577789998887743
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.11 Score=50.93 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=104.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEE--cCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEeCC---
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDF--HPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGG--- 414 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~--~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~~~--- 414 (567)
..++.++.||.|.-+|..+ ++.+-.+... ..++....- .+.+..+++.. ..||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3788999999999999887 5554444432 122222110 01122444343 58999999999988655444321
Q ss_pred -eeEEEEe-----------cCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC--C-----eeEEEEc-----CCCCEEE
Q 008393 415 -TAQMRFQ-----------PHLGRYLAAAAENVVSILDAETQACRLSLQGHTK--P-----IDSVCWD-----PSGELLA 470 (567)
Q Consensus 415 -~~~~~~~-----------~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~--~-----V~~l~~s-----p~g~~l~ 470 (567)
...+... ..++.+++++.++.+...|+++|+.+..+..... . ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112211 1568889999999999999999999999874321 0 1111111 1235677
Q ss_pred EEeCC-eEEEEeCCCCCCCce-EEEeecCCCc--e-EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE
Q 008393 471 SVSED-SVRVWTVGSGSEGEC-VHELSCNGNK--F-HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 534 (567)
Q Consensus 471 s~s~d-~I~iwd~~~~~~~~~-i~~~~~~~~~--i-~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 534 (567)
.+..+ .+.+.+ +++..... +......... + ..-.++.++.+ ++++.||.|+.+|..++..+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77766 677766 44421110 1111110000 0 00001123554 557888888888888777653
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.99 E-value=0.084 Score=51.14 Aligned_cols=209 Identities=9% Similarity=-0.024 Sum_probs=103.6
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-----C------CcEEEEECCCCeeeEEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----D------GEIRYWSINNGSCTRVF 411 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-----d------g~I~iwd~~~~~~~~~~ 411 (567)
+++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||..+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 468999998754433222211122222222233 446666663 1 13788999887654321
Q ss_pred e--CCe--eEEEEecCCCEEEEEECC--------CeEEEEECCCCeEEEEecCCCCCe-eEEEEcCCCCEEEEEeC----
Q 008393 412 K--GGT--AQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPI-DSVCWDPSGELLASVSE---- 474 (567)
Q Consensus 412 ~--~~~--~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~---- 474 (567)
. ... ..++.. ++..++.++.+ ..+.+||..+.+-...-....... .+++. -++++++.|+.
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 1 111 111221 33444444421 468999998875332211111111 22222 45667777765
Q ss_pred ---CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEeccccC--CeeE
Q 008393 475 ---DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEG--LIAA 544 (567)
Q Consensus 475 ---d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~--~V~~ 544 (567)
+.+.+||+.+.. ...+..+........ ++ .-+++.++.|+.++ .+.+||+.+.+...+..... .-.+
T Consensus 162 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 162 KCLNKMCVYDPKKFE-WKELAPMQTARSLFG-AT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp CBCCCEEEEETTTTE-EEECCCCSSCCBSCE-EE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred cccceEEEEeCCCCe-EEECCCCCCchhceE-EE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 258899987641 111211211111112 22 22666777777654 68999999887665432211 1112
Q ss_pred EEEecCCCEEEEEECC
Q 008393 545 LAVSTETGYVASASHD 560 (567)
Q Consensus 545 l~~spdg~~l~s~s~D 560 (567)
++. -++++++.|+.+
T Consensus 239 ~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEE-ETTEEEEEEEEE
T ss_pred EEE-ECCEEEEECCcc
Confidence 222 366777778764
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.91 E-value=0.24 Score=51.11 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=141.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeeccc-------------------------CccEE--EEEEC---CCCCeEEEEeC-
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEH-------------------------SSLIT--DVRFS---PSMPRLATSSF- 349 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h-------------------------~~~V~--~i~fs---p~~~~l~s~s~- 349 (567)
.|.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+. -||+||+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3568889999999999988887766421 01111 12222 15677877764
Q ss_pred CCcEEEEEcCCCCceeEEec-cCCCcEEEEEEc--CCCCeEEEEEe------CCCcEE---------E---EECCCCeee
Q 008393 350 DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFH--PNKDDLICSCD------GDGEIR---------Y---WSINNGSCT 408 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~--p~~~~li~s~~------~dg~I~---------i---wd~~~~~~~ 408 (567)
+..|...+++. -++-..+. .....+..++|- |+..++++.+- .||... + .|..+.+..
T Consensus 152 n~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 152 NSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 56788888876 44433332 345678888886 67666664331 133211 1 122222211
Q ss_pred EE--EeCCeeEEEEecCCCEEEEEECC---------------CeEEEEE-------------------------CCC---
Q 008393 409 RV--FKGGTAQMRFQPHLGRYLAAAAE---------------NVVSILD-------------------------AET--- 443 (567)
Q Consensus 409 ~~--~~~~~~~~~~~~~~~~l~~~~~d---------------g~I~i~d-------------------------~~~--- 443 (567)
.. ..+....+...+++++.++.+.+ ..+.++| .+.
T Consensus 231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 11 11222223345555665555532 1244444 332
Q ss_pred -CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC---------CCCce-EEEeecCCCceEEEEEeCCC
Q 008393 444 -QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG---------SEGEC-VHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 444 -~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~---------~~~~~-i~~~~~~~~~i~~~~~sp~~ 510 (567)
+..+..+-.-......+.++|||+++++++.- +|.++|++.. ....+ +.+.. -+-.....+|.++|
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG 389 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC
Confidence 11111111111234568899999999998865 8999999742 11122 22333 35556778999999
Q ss_pred CeEEEEEcCCeEEEEECCCC----------cEE-EeccccCCeeEEEE------ecCCCEEEEEE
Q 008393 511 PSLLVIGCYQSLELWNMSEN----------KTM-TLTAHEGLIAALAV------STETGYVASAS 558 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~----------~~~-~~~~h~~~V~~l~~------spdg~~l~s~s 558 (567)
....+..-|..|.-|++... ..+ .+..|-.+ -.+.- .++|++|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 54455557899999998653 222 34444332 22222 57899998875
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.80 E-value=0.11 Score=50.30 Aligned_cols=200 Identities=11% Similarity=0.042 Sum_probs=98.5
Q ss_pred EEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeC----CC-------cEEEEECCCCeeeEEEe--CC--ee
Q 008393 353 VRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDG----DG-------EIRYWSINNGSCTRVFK--GG--TA 416 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~----dg-------~I~iwd~~~~~~~~~~~--~~--~~ 416 (567)
+.+||..+........... ...-.+++ ..+ +.+++.|+. ++ .+.+||..+.+....-. .. ..
T Consensus 26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQIPRNHSSIV-TQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEETTTTEEEEEEECTTSCSSEEEEE-CSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred eEEECCCCCceecccCCccCCccceEEE-EEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 7889988744333222211 11222333 233 456667773 12 27788988876543311 11 11
Q ss_pred EEEEecCCCEEEEEECC-------CeEEEEECCCCeEEEEecCCCCCe-eEEEEcCCCCEEEEEeC-------CeEEEEe
Q 008393 417 QMRFQPHLGRYLAAAAE-------NVVSILDAETQACRLSLQGHTKPI-DSVCWDPSGELLASVSE-------DSVRVWT 481 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~d-------g~I~i~d~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~-------d~I~iwd 481 (567)
.++. .++..++.++.+ ..+.+||..+.+-...-....... .+++. .++++++.|+. +.+.+||
T Consensus 104 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 104 GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEc
Confidence 2222 244555666643 368899998875443211111111 12222 46677676653 1589999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC--eeEEEEecCCCEE
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYV 554 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~--V~~l~~spdg~~l 554 (567)
+.+.. ...+..+....... +++. -++..++.|+.+ ..+.+||+.+.+...+.....+ -.+++ .-+++++
T Consensus 182 ~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~ 257 (318)
T 2woz_A 182 PKKGD-WKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLY 257 (318)
T ss_dssp TTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEE
T ss_pred CCCCE-EEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEE
Confidence 87641 12222222111111 2222 256666666643 3688999998876644322211 11222 2356777
Q ss_pred EEEECC
Q 008393 555 ASASHD 560 (567)
Q Consensus 555 ~s~s~D 560 (567)
+.||.+
T Consensus 258 v~GG~~ 263 (318)
T 2woz_A 258 AIGGFA 263 (318)
T ss_dssp EECCBC
T ss_pred EECCee
Confidence 777754
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.79 E-value=0.59 Score=47.90 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=60.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEecc------CCCcEEEEEEcCC---CCeEEEEEeC------
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMG------HSASVMSLDFHPN---KDDLICSCDG------ 393 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~------h~~~V~~l~~~p~---~~~li~s~~~------ 393 (567)
...+.|+|.|+|+++++-...+.|++++..+... .+..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567999999998666654445788887654222 1222221 2356789999996 5666655542
Q ss_pred ------CCcEEEEECCCC--e-----eeE-EEe----CCeeEEEEecCCCEEEEEEC
Q 008393 394 ------DGEIRYWSINNG--S-----CTR-VFK----GGTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 394 ------dg~I~iwd~~~~--~-----~~~-~~~----~~~~~~~~~~~~~~l~~~~~ 432 (567)
...|..|+.... . .+. .+. .....+.|.+++..+++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1 111 122 12577899999876666543
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.66 E-value=0.024 Score=56.16 Aligned_cols=217 Identities=8% Similarity=0.002 Sum_probs=100.5
Q ss_pred CCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCC---CcEEEEEEcCCCCeEEEEEeC-C---------CcEEEEECCCC
Q 008393 340 SMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHS---ASVMSLDFHPNKDDLICSCDG-D---------GEIRYWSINNG 405 (567)
Q Consensus 340 ~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~li~s~~~-d---------g~I~iwd~~~~ 405 (567)
++.+++.|+. ...+.+||+.........+..-. ..-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4445555543 34588888863112222222111 111122222 2456666665 2 46899999887
Q ss_pred eeeEEEe---CC-eeEEEEecCCCEEEEEECC---------------------------------------CeEEEEECC
Q 008393 406 SCTRVFK---GG-TAQMRFQPHLGRYLAAAAE---------------------------------------NVVSILDAE 442 (567)
Q Consensus 406 ~~~~~~~---~~-~~~~~~~~~~~~l~~~~~d---------------------------------------g~I~i~d~~ 442 (567)
+....-. .. ....+...++..++.++.+ +.+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 6543321 11 1111222444555556543 589999998
Q ss_pred CCeEEE--EecCCCCCe-eEEEEcCCCCEEEEEeC-------CeEEEEeC--CCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 443 TQACRL--SLQGHTKPI-DSVCWDPSGELLASVSE-------DSVRVWTV--GSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 443 ~~~~~~--~~~~h~~~V-~~l~~sp~g~~l~s~s~-------d~I~iwd~--~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
+.+-.. .+.. ...- .+++.. ++++++.|+. +.+.+||+ .+. ....+..+..........+...++
T Consensus 177 ~~~W~~~~~~p~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 177 TQQWSYAGESPW-YGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTEEEEEEECSS-CCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCcEEECCCCCC-CCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccceEEEECC
Confidence 864332 2221 1112 333333 5666666652 25777877 322 111111121111111111233355
Q ss_pred CeEEEEEcC----------------------CeEEEEECCCCcEEEeccccC-CeeEEEEecCCCEEEEEECCC
Q 008393 511 PSLLVIGCY----------------------QSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 511 ~~l~~~~~d----------------------g~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg 561 (567)
..++.|+.+ ..+.+||+.+.+...+..... .....++.-++++++.||.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence 656666532 257899998876553321111 111122334678888888653
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.63 E-value=0.063 Score=51.91 Aligned_cols=212 Identities=10% Similarity=0.017 Sum_probs=102.7
Q ss_pred CCCeEEEEeC----CCcEEEEEcCCCCceeEEeccCCC--cEEEEEEcCCCCeEEEEEeC----C-----CcEEEEECCC
Q 008393 340 SMPRLATSSF----DKTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDG----D-----GEIRYWSINN 404 (567)
Q Consensus 340 ~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~~p~~~~li~s~~~----d-----g~I~iwd~~~ 404 (567)
++.+++.|+. -..+.+||..+... ..+..... .-.+++.. ++.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3445555553 13578888876322 22211110 01122222 3456666665 2 4688999988
Q ss_pred CeeeEEEeC--C--eeEEEEecCCCEEEEEEC-----CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC
Q 008393 405 GSCTRVFKG--G--TAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE 474 (567)
Q Consensus 405 ~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~ 474 (567)
.+....-.. . ...+.. .++..++.++. ...+.+||..+.+-...-...... -.+++.. ++++++.|+.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 765433211 1 111222 23344444443 247899999887543321111111 1122222 5677776653
Q ss_pred C------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC--
Q 008393 475 D------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL-- 541 (567)
Q Consensus 475 d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~-- 541 (567)
+ .+.+||+.+.. ...+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+...+.....+
T Consensus 178 ~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNE-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCe-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 2 58899987641 1111112111111222222 56666666654 4799999998876644322111
Q ss_pred eeEEEEecCCCEEEEEECCC
Q 008393 542 IAALAVSTETGYVASASHDK 561 (567)
Q Consensus 542 V~~l~~spdg~~l~s~s~Dg 561 (567)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 3677777887653
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.01 Score=58.27 Aligned_cols=143 Identities=8% Similarity=0.009 Sum_probs=84.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeeccc-CccEEEEEE--CC-CCCeEEEE-eCCCcEEEEEcCCCCceeEEecc----
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRF--SP-SMPRLATS-SFDKTVRVWDADNPGYSLRTFMG---- 370 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~f--sp-~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~---- 370 (567)
.++++++.||.|.-+|.++|+.+.+++.. ..++....- .+ ++..++.. ..||.|..++..+ +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 37888999999999999999999998754 122222110 01 22233333 5799999999876 332222210
Q ss_pred CCCcEEE---EEE-cC---CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee----------EEEEe-----cCCCEEE
Q 008393 371 HSASVMS---LDF-HP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----------QMRFQ-----PHLGRYL 428 (567)
Q Consensus 371 h~~~V~~---l~~-~p---~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~----------~~~~~-----~~~~~l~ 428 (567)
...++.. ..+ .+ .....+++|+.+|.+...|+.+|+.+..+..... +.... ..++.++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1122221 000 00 0234667999999999999999999999875421 11111 1235677
Q ss_pred EEECCCeEEEEECCCC
Q 008393 429 AAAAENVVSILDAETQ 444 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~ 444 (567)
.+..+..+.+.+ +++
T Consensus 170 ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 170 IGKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEEECEECC-TTS
T ss_pred EecceEEEEEEC-CCC
Confidence 777777777766 444
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.48 E-value=0.13 Score=59.08 Aligned_cols=217 Identities=10% Similarity=0.187 Sum_probs=126.2
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
....|.|.|+.++..+..-.- .--+...+|..+.||.=. ..++.|+|+++ +..+..+.- ...|.-=.|..+..
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~-k~klks~~~-~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLNT- 118 (1630)
T ss_pred CCceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHH-hhhhccccc-CCCceEEEecCCCe-
Confidence 344788999887654422110 112335677777666654 67899999998 444444442 34566667765432
Q ss_pred EEEEEeCCCcEEEEECCCC-eeeEEEeC-------CeeEEEEecCCCEEEEEEC-------CCeEEEEECCCCeEEEEec
Q 008393 387 LICSCDGDGEIRYWSINNG-SCTRVFKG-------GTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~-~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 451 (567)
+.+++ +..|+-|++... .+++.|.. .+...+.+++..+++..+- .|.+.+|..+.+.. ..+.
T Consensus 119 l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ie 195 (1630)
T 1xi4_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE 195 (1630)
T ss_pred eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhh
Confidence 33222 668999999742 23333321 2333456777777765543 47888888876532 2345
Q ss_pred CCCCCeeEEEEcC---CCCEEEEEeC---C-eEEEEeCCCC---CCC---ceEEEee---cCCCceEEEEEeCCCCeEEE
Q 008393 452 GHTKPIDSVCWDP---SGELLASVSE---D-SVRVWTVGSG---SEG---ECVHELS---CNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 452 ~h~~~V~~l~~sp---~g~~l~s~s~---d-~I~iwd~~~~---~~~---~~i~~~~---~~~~~i~~~~~sp~~~~l~~ 515 (567)
||......+.+.. ...+++.+.. + .++|.++... ... +.+..+- ....-..++..++....++.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 5544433333221 1224443332 3 7888888543 100 1111111 11333456778888899999
Q ss_pred EEcCCeEEEEECCCCcEE
Q 008393 516 IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~ 533 (567)
.+..|.|++||+.++..+
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 999999999999999866
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.44 E-value=0.46 Score=47.57 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=90.9
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-------CeeEEEEecCCCEEEEEECCCeEEEEECCCCe-------
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQA------- 445 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~------- 445 (567)
.+.++..+++.- ++.||.-++.....-+.++. .+..+..+|+|..++.. .+..|.|..+..+.
T Consensus 28 ~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccc
Confidence 344556666433 57888888775443444332 35678899986666555 56678887776221
Q ss_pred -----EEEEecC------CCCCeeEEEEcCC---CCEEEEEeCC-eEEEEeCCCCCC-CceE------EEeecCCCceEE
Q 008393 446 -----CRLSLQG------HTKPIDSVCWDPS---GELLASVSED-SVRVWTVGSGSE-GECV------HELSCNGNKFHS 503 (567)
Q Consensus 446 -----~~~~~~~------h~~~V~~l~~sp~---g~~l~s~s~d-~I~iwd~~~~~~-~~~i------~~~~~~~~~i~~ 503 (567)
..+.+.- ...+|..+.|+|- +..|++-..| .|++||+..... +..+ ..+......+.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1122221 2567999999994 4578888888 999999986322 1111 111122356889
Q ss_pred EEEeCCCCeEEEEE--cCCeEEEE
Q 008393 504 CVFHPTYPSLLVIG--CYQSLELW 525 (567)
Q Consensus 504 ~~~sp~~~~l~~~~--~dg~I~iw 525 (567)
++|..++-.|++.. ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999888888866 77888765
No 343
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.43 E-value=0.87 Score=45.46 Aligned_cols=254 Identities=8% Similarity=-0.041 Sum_probs=119.7
Q ss_pred CCCeEEEEEcC--CCCeEEEEeCCC----cEEEEeCCCCeeeeeec------c--------cCccEEEEEECCC--CCeE
Q 008393 287 TSKVICCHFSS--DGKLLATGGHDK----KAVLWHTDTLKSKTNLE------E--------HSSLITDVRFSPS--MPRL 344 (567)
Q Consensus 287 ~~~V~~l~~s~--dg~~lasg~~dg----~I~vwd~~~~~~~~~l~------~--------h~~~V~~i~fsp~--~~~l 344 (567)
...|.+|+++| ++.+++ ++..| .|... .+.++.-..+. . +...|.+|++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35689999998 444444 44444 34333 22232211111 1 1135888999872 4566
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEecc-------------------CCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCC
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMG-------------------HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~-------------------h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~ 404 (567)
+.+...+.|... ...+.....+.. ....|.+|.+.|.. ..++ .+..++.|...+-.
T Consensus 132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~-vg~~~ggl~~s~Dg- 207 (394)
T 3b7f_A 132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY-IGMSSGGVFESTDA- 207 (394)
T ss_dssp EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE-EEEETBEEEEESST-
T ss_pred EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE-EEECCCCEEEECCC-
Confidence 666655544433 333333333221 12458899998743 3444 34334444443222
Q ss_pred CeeeEEEe----------------CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecC--CC---CCeeEEEE
Q 008393 405 GSCTRVFK----------------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQG--HT---KPIDSVCW 462 (567)
Q Consensus 405 ~~~~~~~~----------------~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~---~~V~~l~~ 462 (567)
++.-..+. ..+..+.+.+.. +.++++.. +.|...+-... ....+.. .. ..+.+|++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~G~-tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRREG-VWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETTTT-EEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCCCC-cceECCCCCCCCCccceEEEEE
Confidence 22211111 125667788763 56666654 44555543322 2222221 11 34567888
Q ss_pred cC-CCCEEEEEeC-----------C-eEEEEeCCC-CCCCceEEE-eecCCC----ceEEEEEeCCC-CeEEEEEcCCeE
Q 008393 463 DP-SGELLASVSE-----------D-SVRVWTVGS-GSEGECVHE-LSCNGN----KFHSCVFHPTY-PSLLVIGCYQSL 522 (567)
Q Consensus 463 sp-~g~~l~s~s~-----------d-~I~iwd~~~-~~~~~~i~~-~~~~~~----~i~~~~~sp~~-~~l~~~~~dg~I 522 (567)
+| +...|+.+.. + ...||.... +.....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 76 3333443321 2 344555443 222222221 111000 11356788753 457777666666
Q ss_pred EEEECCCCcEEEeccccCCeeEEEEe
Q 008393 523 ELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 523 ~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
+.-+-.......+..+-..+.+|.|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 65433222233444444567777764
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.42 E-value=0.16 Score=55.32 Aligned_cols=221 Identities=5% Similarity=-0.019 Sum_probs=114.0
Q ss_pred CCCCeEEEEeCC----CcEEEEEcCCCCceeEEec------cCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEEC
Q 008393 339 PSMPRLATSSFD----KTVRVWDADNPGYSLRTFM------GHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSI 402 (567)
Q Consensus 339 p~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~ 402 (567)
-++..++.|+.+ ..+.+||..+.......+. .....-.+++....++.+++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 4588999887443322201 1111112333333134566677653 35889999
Q ss_pred CCCeeeEEEe--CC--eeEEEEecCCCEEEEEECCC--eEEEEECCCCeEEEEec-----CCCCCeeEEEEcCC-CCEEE
Q 008393 403 NNGSCTRVFK--GG--TAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQ-----GHTKPIDSVCWDPS-GELLA 470 (567)
Q Consensus 403 ~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~-----~h~~~V~~l~~sp~-g~~l~ 470 (567)
.+.+....-. .. ...++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8876544321 11 12223323666667766543 79999998875433211 11122233555555 66777
Q ss_pred EEeC--------CeEEEEeCCCCCC-----CceEEEeecCCCceEEEEEeCCCCeEEEEEc--------CCeEEEEECCC
Q 008393 471 SVSE--------DSVRVWTVGSGSE-----GECVHELSCNGNKFHSCVFHPTYPSLLVIGC--------YQSLELWNMSE 529 (567)
Q Consensus 471 s~s~--------d~I~iwd~~~~~~-----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~--------dg~I~iwd~~~ 529 (567)
.|+. +.+.+||+.+..- ...+.........-.+++...++..+++||. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7764 2588999987641 1222221111112223334444666667764 24699999998
Q ss_pred CcEEEeccccC--------Ce-eEEEEecCCCEEEEEEC
Q 008393 530 NKTMTLTAHEG--------LI-AALAVSTETGYVASASH 559 (567)
Q Consensus 530 ~~~~~~~~h~~--------~V-~~l~~spdg~~l~s~s~ 559 (567)
.+......... .+ .+.....++++++.||.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 87653221100 00 23333456678777774
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.10 E-value=0.48 Score=42.95 Aligned_cols=170 Identities=12% Similarity=0.034 Sum_probs=95.7
Q ss_pred CeEEEEEeCCCcEEEEECCCCe------eeEEEe----CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE------EE
Q 008393 385 DDLICSCDGDGEIRYWSINNGS------CTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC------RL 448 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~------~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~------~~ 448 (567)
+.+|++..+| +|+.=....+. ....+. .....++|+|++. |+++ .++.++-.+..+... ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3455566666 66655554443 112222 2567899999655 5555 888888887755111 11
Q ss_pred Eec--CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceE----EEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 449 SLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 449 ~~~--~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.+- +-. ...++.|.++|.+.++ +++.|+-++-.+.....-+ ..-...-..+..+.|.|+|...++. ++.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 111 111 1478999999998887 5568877776432221111 1111122457899999999854444 8876
Q ss_pred EEEECCCCcE------EEec--cccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 523 ELWNMSENKT------MTLT--AHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 523 ~iwd~~~~~~------~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
+-.....+.. .... ......+-+.|.+++.+.+.. +|.|
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5544432221 1111 233345557789998776665 6644
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.02 E-value=0.2 Score=57.58 Aligned_cols=233 Identities=10% Similarity=0.158 Sum_probs=137.0
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH- 371 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h- 371 (567)
.-.+|..+.+|.-. ..++.|||+++...+..+.-.. .|.-=.|-... .|+..+ +..|+-|+++....+++.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 44567667776654 7899999999877766665433 35555665443 344333 3459999998655666666555
Q ss_pred ---CCcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCeeEE---EE--ecCCCEEEEEEC----C
Q 008393 372 ---SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQM---RF--QPHLGRYLAAAA----E 433 (567)
Q Consensus 372 ---~~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~~~----d 433 (567)
...|.....+++.+.++++|- -.|.+.+|..+.+.. ..+.++..+. .. .+....+++-+. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 466777888888888877664 357788888775432 1222222111 11 111223333222 2
Q ss_pred CeEEEEECCCC---eE------EEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 434 NVVSILDAETQ---AC------RLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 434 g~I~i~d~~~~---~~------~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+.++|.++... .. +..+.. -.+-..++..++.-.+++..+.- .|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888887542 11 111111 12223456677766666666666 9999999988 566555555555
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|...+.+....-++.....|.|.-..+.+...+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 555454444444666667777766666655544
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.63 E-value=2.3 Score=43.41 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eeecc------cCccEEEEEECCC---CCeEEEEeC-------
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEE------HSSLITDVRFSPS---MPRLATSSF------- 349 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l~~------h~~~V~~i~fsp~---~~~l~s~s~------- 349 (567)
...++|+|.|||+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45579999999987776544457988886555432 22221 2456789999996 555555442
Q ss_pred ------CCcEEEEEcCCCC------ce-eEEec-cCCCcEEEEEEcCCCCeEEEEE
Q 008393 350 ------DKTVRVWDADNPG------YS-LRTFM-GHSASVMSLDFHPNKDDLICSC 391 (567)
Q Consensus 350 ------dg~I~iwd~~~~~------~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~ 391 (567)
...|..|+++... +. +..+. ........|+|.|+|..++.+|
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2346666654321 11 11122 1123478999999987555444
No 348
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.54 E-value=1.4 Score=47.76 Aligned_cols=238 Identities=8% Similarity=0.014 Sum_probs=122.5
Q ss_pred EEE-EcCCCCeEEEEe-----CCCcEEEEeCCCCeeeee-ec-ccCc------cEEEEEECCCCCeEEEE----------
Q 008393 292 CCH-FSSDGKLLATGG-----HDKKAVLWHTDTLKSKTN-LE-EHSS------LITDVRFSPSMPRLATS---------- 347 (567)
Q Consensus 292 ~l~-~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~-l~-~h~~------~V~~i~fsp~~~~l~s~---------- 347 (567)
.+. ++||+++++.+- .-..|+++|+.+++.+.. +. .-+. ....++|..+...+++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 889998877642 234799999999987642 22 0000 11334776333333332
Q ss_pred eCCCcEEEEEcCCCCc-eeEEeccCCCcE-EEEEEcCCCCe----EEEEEeC---CCcEEEEECCC--CeeeEEEeCCee
Q 008393 348 SFDKTVRVWDADNPGY-SLRTFMGHSASV-MSLDFHPNKDD----LICSCDG---DGEIRYWSINN--GSCTRVFKGGTA 416 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~-~~~~~~~h~~~V-~~l~~~p~~~~----li~s~~~---dg~I~iwd~~~--~~~~~~~~~~~~ 416 (567)
+....|+.|.+-++.. -...+.+....+ .......++.. ++++.+. ...+.+.+... ++..........
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 1234689998876422 223344333333 34445666653 4545432 24566667653 332222222222
Q ss_pred EEEEecCCCEEEEE-----------ECCCeEEEEECCCCe-------EEEE-ecC-CCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 417 QMRFQPHLGRYLAA-----------AAENVVSILDAETQA-------CRLS-LQG-HTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 417 ~~~~~~~~~~l~~~-----------~~dg~I~i~d~~~~~-------~~~~-~~~-h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
.+..... +.+++. ...+.|.++|+.+.. .... +.. ....+..+.|..+ .++++...+
T Consensus 293 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~ 370 (711)
T 4hvt_A 293 TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV 370 (711)
T ss_dssp EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence 2223333 344432 235678899887631 1112 222 2345778888876 455555555
Q ss_pred --eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEE-cC---CeEEEEECCCCcEE
Q 008393 476 --SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CY---QSLELWNMSENKTM 533 (567)
Q Consensus 476 --~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~d---g~I~iwd~~~~~~~ 533 (567)
.|.++++.++. ....+..+.. ...+....+.+++..++... .. ..++.+|+. ++..
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57888876542 1111111221 23465566667776555443 32 488899887 5433
No 349
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.13 E-value=0.096 Score=47.48 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee------eeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK------TNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~------~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
.+.+++|+|+|.+.++ .+|.+.-.+..+.... ..+- +... ..++.|.++|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5569999999987777 6777766665442211 1111 1111 478999999977777 569888787633
Q ss_pred CCcee-----EEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 361 PGYSL-----RTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 361 ~~~~~-----~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
.+..- ..+ .+-=..+..|.|.|+|. |. ... |+.++-+...
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Ly-av~-dg~lyr~~~P 162 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LY-AVH-GQQFYKALPP 162 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EE-EEE-TTEEEEECCC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce-EE-EEe-CCcEEecCCC
Confidence 22110 111 11125679999999986 33 334 7776544333
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.08 E-value=2.3 Score=44.08 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEe--cCCCEEEEEEC-------CCe-E-----------E
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQ--PHLGRYLAAAA-------ENV-V-----------S 437 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~--~~~~~l~~~~~-------dg~-I-----------~ 437 (567)
||+++++-.-.+..|-..+++..++.+.+.. .+..+++. |+.+++++++. ||. + .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 4666665555677899999999988877764 34566665 67788888775 222 1 1
Q ss_pred EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----------------eEEEEeCCC-------CC--CCc--e
Q 008393 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------------SVRVWTVGS-------GS--EGE--C 490 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----------------~I~iwd~~~-------~~--~~~--~ 490 (567)
..|..+.+..+.+.- .+....+..+++|+|.++.+.+ .+.++++.. ++ ... -
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 234444444333321 2233445567788888777632 466776641 10 001 1
Q ss_pred EEEeecC---------------CCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC------cE-------EEeccccCC
Q 008393 491 VHELSCN---------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN------KT-------MTLTAHEGL 541 (567)
Q Consensus 491 i~~~~~~---------------~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~------~~-------~~~~~h~~~ 541 (567)
+..+.+. ....+.|.++|||+++++++. +.++.++|+..- +. .....-.-.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG 379 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG 379 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence 1122221 123456789999999998876 459999998742 11 111122334
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 542 IAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 542 V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....+|.++|....|.-.|..|.-|+
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ccEEEECCCCceEeeeeecceEEEEe
Confidence 66789999995555555788898885
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.68 E-value=3.8 Score=40.65 Aligned_cols=258 Identities=9% Similarity=-0.036 Sum_probs=120.4
Q ss_pred eEEEEeCCCcEEEEeCCC-Ceeeeee--cccCccEEEEEECC-CCCeEEEEeCCC--cEEEEEcCCCCceeEEecc----
Q 008393 301 LLATGGHDKKAVLWHTDT-LKSKTNL--EEHSSLITDVRFSP-SMPRLATSSFDK--TVRVWDADNPGYSLRTFMG---- 370 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~-~~~~~~l--~~h~~~V~~i~fsp-~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~---- 370 (567)
.|.+|+..| +.+++... ++.-..+ ......|.+|++.| +...|+.+...| ...||.....+.....+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccC
Confidence 566677666 44444332 2211111 12245699999998 333454554444 0123333332333232221
Q ss_pred ----------CCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEE---------------------eCCeeE
Q 008393 371 ----------HSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF---------------------KGGTAQ 417 (567)
Q Consensus 371 ----------h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~---------------------~~~~~~ 417 (567)
....|.+|++.|. ...++ .+...+.|...+-......... ...+..
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~ 181 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS 181 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence 1125788999873 34444 4555565555432222211110 012356
Q ss_pred EEEecC-CCEEEEEECCCeEEEEECCC--CeEEEE-ecC-C--------CCCeeEEEEcCC-CCEEEEEeCCeEEEEeCC
Q 008393 418 MRFQPH-LGRYLAAAAENVVSILDAET--QACRLS-LQG-H--------TKPIDSVCWDPS-GELLASVSEDSVRVWTVG 483 (567)
Q Consensus 418 ~~~~~~-~~~l~~~~~dg~I~i~d~~~--~~~~~~-~~~-h--------~~~V~~l~~sp~-g~~l~s~s~d~I~iwd~~ 483 (567)
+.+.|. .+.++++..++.|...+-.. .+.+.. +.. + ...+.+|+++++ ...|+.+..+.|...+-.
T Consensus 182 i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~ 261 (394)
T 3b7f_A 182 ILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR 261 (394)
T ss_dssp EEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT
T ss_pred EEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC
Confidence 777774 45677776666555543322 222110 000 0 124889999985 356666666665554422
Q ss_pred CCCCCceEEEeec--CC---CceEEEEEeCC-CCeEEEEEc-----------CCeEEEEECCC-CcEE-Eec-cccC---
Q 008393 484 SGSEGECVHELSC--NG---NKFHSCVFHPT-YPSLLVIGC-----------YQSLELWNMSE-NKTM-TLT-AHEG--- 540 (567)
Q Consensus 484 ~~~~~~~i~~~~~--~~---~~i~~~~~sp~-~~~l~~~~~-----------dg~I~iwd~~~-~~~~-~~~-~h~~--- 540 (567)
+ .....+.. .. ..+..++++|. ...|+++.. ++...||.... ++.. .+. +...
T Consensus 262 -G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~ 337 (394)
T 3b7f_A 262 -E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQA 337 (394)
T ss_dssp -T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSC
T ss_pred -C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccc
Confidence 2 12222211 11 23567788763 345666542 23344554443 3322 221 1111
Q ss_pred ----CeeEEEEecCC-CEEEEEECCCcEE
Q 008393 541 ----LIAALAVSTET-GYVASASHDKFVK 564 (567)
Q Consensus 541 ----~V~~l~~spdg-~~l~s~s~Dg~I~ 564 (567)
...+++++|.. ..|+.++.++.|.
T Consensus 338 ~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 338 WLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred cceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 12357887743 4466666566554
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.63 E-value=0.47 Score=51.57 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=82.3
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHD------KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~d------g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~ 367 (567)
++++++.||.+ ..+.+||..+.+.... +......- +++...++.+++.|+.++ .+.+||..+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 3578899887543332 22111111 223323777888887654 6899999874332211
Q ss_pred e----ccCCCcEEEEEEcCCCCeEEEEEeC--C-----CcEEEEECCCCe------eeEEEeC-----CeeEEEEecCCC
Q 008393 368 F----MGHSASVMSLDFHPNKDDLICSCDG--D-----GEIRYWSINNGS------CTRVFKG-----GTAQMRFQPHLG 425 (567)
Q Consensus 368 ~----~~h~~~V~~l~~~p~~~~li~s~~~--d-----g~I~iwd~~~~~------~~~~~~~-----~~~~~~~~~~~~ 425 (567)
. ........++.+..+.+.+++.|+. + ..+.+||+.+.. ....... ....+....++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222234455443567767765 2 468999999887 2222211 111223333245
Q ss_pred EEEEEEC--------CCeEEEEECCCCeEE
Q 008393 426 RYLAAAA--------ENVVSILDAETQACR 447 (567)
Q Consensus 426 ~l~~~~~--------dg~I~i~d~~~~~~~ 447 (567)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 5555553 346999999987654
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.49 E-value=7.5 Score=39.64 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCe---eeeeec---------ccCccEEEEEECCC---CCeEEEE-eC-
Q 008393 288 SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLK---SKTNLE---------EHSSLITDVRFSPS---MPRLATS-SF- 349 (567)
Q Consensus 288 ~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~---~~~~l~---------~h~~~V~~i~fsp~---~~~l~s~-s~- 349 (567)
..-+.|+|.|||. .|+++...|.|++++.+... .+..+. ........|+|+|+ ..+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456899999996 55566788999999754221 222221 11356889999996 2333333 21
Q ss_pred -C----------CcEEEEEcCCC---------CceeEEec--cCCCcEEEEEEcCCCCeEEEEE
Q 008393 350 -D----------KTVRVWDADNP---------GYSLRTFM--GHSASVMSLDFHPNKDDLICSC 391 (567)
Q Consensus 350 -d----------g~I~iwd~~~~---------~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~ 391 (567)
+ ..|.-|.+... .+.+..+. ........|.|.|||..+|.+|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 14555666421 11222221 1223467899999986555444
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.03 E-value=8.1 Score=36.41 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=107.0
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeE
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 387 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 387 (567)
||.|+.|-....-.+-.-......|..|+..... .++. . ||.|+.|-....+..-. -..-...|..++.... +.
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs 114 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAW--AS 114 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEETT--EE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEECcCC--EE
Confidence 7778877654321111111122356666665443 2333 4 89999998765333211 1111346777777533 33
Q ss_pred EEEEeCCCcEEEEECCCCeeeEE-EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 388 ICSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
+ .-. ||.|+.|-....-.+.. .........+.......++.. ++.|+.|-....-.+-.-..-...|..|+...+.
T Consensus 115 ~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h 191 (282)
T 3qhy_B 115 Y-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH 191 (282)
T ss_dssp E-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE
T ss_pred E-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE
Confidence 3 334 99999997654221110 001111222222233444444 7888888654321100000012456666654433
Q ss_pred CEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEE
Q 008393 467 ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA 546 (567)
Q Consensus 467 ~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~ 546 (567)
. ++. .++.|+.|-......... . ......|..++..... .++.. +|.|+.|-......+.+ ...|.+++
T Consensus 192 s-~al-~~G~v~~wG~n~~gqlg~--p-~~~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~gq~~v---~~~v~~ia 260 (282)
T 3qhy_B 192 S-LAL-KDGKVIAWGDNRYKQTTV--P-TEALSGVSAIASGEWY--SLALK-NGKVIAWGSSRTAPSSV---QSGVSSIE 260 (282)
T ss_dssp E-EEE-ETTEEEEEECCTTSTTCC--C-GGGGSSCCEEEECSSC--EEEEE-TTEEEEESTTCCCCGGG---SSCEEEEE
T ss_pred E-EEE-ECCeEEEEECCCCCCCCC--C-cccCCCceEEEcCCCE--EEEEE-CCEEEEecCCCCccccC---CCCcEEEE
Confidence 3 333 434888887654311110 0 0112235555544333 34444 99999997765443322 33566666
Q ss_pred EecC
Q 008393 547 VSTE 550 (567)
Q Consensus 547 ~spd 550 (567)
....
T Consensus 261 aG~~ 264 (282)
T 3qhy_B 261 AGPN 264 (282)
T ss_dssp ECSS
T ss_pred ECcC
Confidence 5443
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.88 E-value=11 Score=37.33 Aligned_cols=163 Identities=10% Similarity=0.078 Sum_probs=97.8
Q ss_pred cEEEEECCCC--eeeEEEeC---------CeeEEEEe---cC----CCEEEEEEC-CCeEEEEECCCCeEEEEecC----
Q 008393 396 EIRYWSINNG--SCTRVFKG---------GTAQMRFQ---PH----LGRYLAAAA-ENVVSILDAETQACRLSLQG---- 452 (567)
Q Consensus 396 ~I~iwd~~~~--~~~~~~~~---------~~~~~~~~---~~----~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~---- 452 (567)
.|.+||+.+. +.++.+.- ....+++. +. +..++++.. ...|.+||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888887 77776643 24556666 22 334444443 67999999999876655421
Q ss_pred C--------------CCCeeEEEEcCC----CCEEEEEeCCeEEEEeCCC-----CCCCceEEEeecCC--CceEEEEEe
Q 008393 453 H--------------TKPIDSVCWDPS----GELLASVSEDSVRVWTVGS-----GSEGECVHELSCNG--NKFHSCVFH 507 (567)
Q Consensus 453 h--------------~~~V~~l~~sp~----g~~l~s~s~d~I~iwd~~~-----~~~~~~i~~~~~~~--~~i~~~~~s 507 (567)
. ...|..|+++|+ ++.|+......-++|.+.+ ......+..+.... ..-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 146888999998 7888877766445555432 21122333332222 334455776
Q ss_pred -CCCCeEEEEEcCCeEEEEECCC-C----cEEEe--ccccCCeeEEEEecCCCEEEEEE
Q 008393 508 -PTYPSLLVIGCYQSLELWNMSE-N----KTMTL--TAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 508 -p~~~~l~~~~~dg~I~iwd~~~-~----~~~~~--~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.+|..+++--..+.|..|+..+ . ....+ ...-..+..+.+..+|.+.+.++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5676566666677999999876 2 11121 12233577888888887666554
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.70 E-value=5.5 Score=37.60 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=105.6
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
.|..|+..... .++. . ||.|+.|-....+..-. -......|..++.... +.++. . ||.|+.|-....-.+-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 46666654432 2333 4 89999998765332211 1112235667766533 34433 4 89999998664221110
Q ss_pred ---EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCC
Q 008393 411 ---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 487 (567)
Q Consensus 411 ---~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~ 487 (567)
+...+..++. .....++.. ++.|+.|-....-.+-.-......|..|+...+..++ -.++.|+.|-......
T Consensus 97 P~~~~~~v~~ia~--G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 97 PAEARSGVDAIAA--GAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VKNGGVIAWGDNYFGQ 171 (282)
T ss_dssp CGGGSSSEEEEEE--ETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EETTEEEEEECCTTST
T ss_pred CcccCCCeEEEEC--cCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EECCEEEEecCCCCCC
Confidence 1122333333 334555666 8899988765421100001122456666654433222 2334888887654221
Q ss_pred CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
... -......|..++..... .++. .+|.|+.|-....-.+ .-......|..++..... .++. . ||.|+.|
T Consensus 172 lg~---p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~w 242 (282)
T 3qhy_B 172 TTV---PAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAW 242 (282)
T ss_dssp TSC---CGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEE
T ss_pred CCC---ceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEe
Confidence 110 00112346555554433 3334 6899999976543222 111122356676654332 2333 3 8888877
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.84 E-value=19 Score=36.67 Aligned_cols=227 Identities=15% Similarity=0.092 Sum_probs=115.8
Q ss_pred ccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCC--ceeEEec---------cCCCcEEEEEEcCC---CCeEEEEEeC-
Q 008393 330 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--YSLRTFM---------GHSASVMSLDFHPN---KDDLICSCDG- 393 (567)
Q Consensus 330 ~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~~~---------~h~~~V~~l~~~p~---~~~li~s~~~- 393 (567)
..-+.|+|.|++. .|+++...|.|++++.+... ..+..+. ........|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 67777889999999754311 1222221 11356889999996 2344444332
Q ss_pred -C----------CcEEEEECCCC----------eeeEEEe-----CCeeEEEEecCCCEEEEEECCC-------------
Q 008393 394 -D----------GEIRYWSINNG----------SCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN------------- 434 (567)
Q Consensus 394 -d----------g~I~iwd~~~~----------~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg------------- 434 (567)
+ ..|.-|.+..+ +.+..+. .....+.|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555665421 2222222 1346789999986666655432
Q ss_pred ----eEEEEECCCC---------------------eEEEEecCCCCCeeEEEEcCC-----CC-EEEEEeC---C--eEE
Q 008393 435 ----VVSILDAETQ---------------------ACRLSLQGHTKPIDSVCWDPS-----GE-LLASVSE---D--SVR 478 (567)
Q Consensus 435 ----~I~i~d~~~~---------------------~~~~~~~~h~~~V~~l~~sp~-----g~-~l~s~s~---d--~I~ 478 (567)
.|.-+|.... ..++ -.+|.. ...++|+|. |. +++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444331 0111 122333 346899996 44 3443321 1 123
Q ss_pred EEeCCCCCC---CceEEEeecC-CCceEEEEEeCCC------CeEEEEEcCCeEEEEECCCCcE----EEec--------
Q 008393 479 VWTVGSGSE---GECVHELSCN-GNKFHSCVFHPTY------PSLLVIGCYQSLELWNMSENKT----MTLT-------- 536 (567)
Q Consensus 479 iwd~~~~~~---~~~i~~~~~~-~~~i~~~~~sp~~------~~l~~~~~dg~I~iwd~~~~~~----~~~~-------- 536 (567)
|..+..+.. ...+..+..+ ...+..+.|-... ..++++...+.|....++.... ..+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444332221 1233333322 1456677764322 1255565557777666654321 1221
Q ss_pred -cccCCeeEEEEecCCCEEEEEE
Q 008393 537 -AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 537 -~h~~~V~~l~~spdg~~l~s~s 558 (567)
.....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235689999999999887765
No 358
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=86.48 E-value=42 Score=36.74 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCC-CeEEEEeCCCc----E
Q 008393 287 TSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM-PRLATSSFDKT----V 353 (567)
Q Consensus 287 ~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~-~~l~s~s~dg~----I 353 (567)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+.. ....|.+|++.|.. ..++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 35666677777766554 23332222322 13469999999843 34555443321 3
Q ss_pred EEEEcCCCCceeEEeccC-------C--CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---------CCe
Q 008393 354 RVWDADNPGYSLRTFMGH-------S--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGT 415 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h-------~--~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---------~~~ 415 (567)
.||.....+.....+... . ..+..|+++|.....++.+...+.|. .....++.-..+. ..+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455554445544433210 1 13567888886555665665444332 2222232222221 235
Q ss_pred eEEEEecCC-CEEEEEECC
Q 008393 416 AQMRFQPHL-GRYLAAAAE 433 (567)
Q Consensus 416 ~~~~~~~~~-~~l~~~~~d 433 (567)
..+.+.|.. +.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 567787754 466666654
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.08 E-value=22 Score=33.22 Aligned_cols=207 Identities=9% Similarity=-0.034 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEe---CCCCeeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCC--
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWH---TDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNP-- 361 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd---~~~~~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~-- 361 (567)
+.+..+.......+|+.-+..|.++--. +........+. ....|..+.... +..+++..+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 4555555555555666666777766433 22221111133 345566664421 4679999999999999987642
Q ss_pred ---CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 362 ---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 362 ---~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
+.....+. ..+.+..+........++ ..+..|.+..+....-.....- ..-+.+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~---------------------a~Gv~~ 159 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPG---------------------ARGVQG 159 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTT---------------------CCCEEC
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCC---------------------CCCEEE
Confidence 11111122 123444444433333333 4455666555554321110000 000111
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC----CCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
. .+.. ...|..+....++..|+..+.. .++...+.... ..+-+..+ ...+.+..+....+...+
T Consensus 160 i---------~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i 228 (276)
T 3no0_A 160 I---------KLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVEL 228 (276)
T ss_dssp C---------CCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEE
T ss_pred E---------ccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEE
Confidence 1 1221 2344444444445566666666 77777664321 11122222 233445554444444567
Q ss_pred EEEEcCCeEEE--EECCC
Q 008393 514 LVIGCYQSLEL--WNMSE 529 (567)
Q Consensus 514 ~~~~~dg~I~i--wd~~~ 529 (567)
+..+.+|.+.. ++...
T Consensus 229 ~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 229 LITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEEEGGG
T ss_pred EEEcCCCeEEEeeeCHHH
Confidence 78888887777 76543
No 360
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=81.70 E-value=38 Score=32.46 Aligned_cols=69 Identities=6% Similarity=-0.039 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCC---------CCeeeee---ecccCccEEEE-EECC--CCCeEEEEeCCCcEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSKTN---LEEHSSLITDV-RFSP--SMPRLATSSFDKTVR 354 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~---------~~~~~~~---l~~h~~~V~~i-~fsp--~~~~l~s~s~dg~I~ 354 (567)
+..+........|+..+..|.++-+... .|..+.. +. ....|.++ .... ++.+|+.++.+|.++
T Consensus 41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 3334444444566666677776655432 2232211 22 23345554 4432 256899999999999
Q ss_pred EEEcC
Q 008393 355 VWDAD 359 (567)
Q Consensus 355 iwd~~ 359 (567)
...+.
T Consensus 120 rt~l~ 124 (323)
T 1wp5_A 120 KTELK 124 (323)
T ss_dssp EEEGG
T ss_pred EeEHH
Confidence 99875
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.46 E-value=72 Score=34.85 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=73.0
Q ss_pred CccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeCCCc----
Q 008393 329 SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGE---- 396 (567)
Q Consensus 329 ~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~dg~---- 396 (567)
...|.+|+++|.. ..++.+...+.|...+ ..+.....+..+ ...|.+|++.|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 4579999999863 4677777777665444 334444444332 2469999999864444444432211
Q ss_pred EEEE-ECCCCeeeEEEeC------------CeeEEEEecCCC-EEEEEECCCeEEEEEC--CCCeEEEEec---CCCCCe
Q 008393 397 IRYW-SINNGSCTRVFKG------------GTAQMRFQPHLG-RYLAAAAENVVSILDA--ETQACRLSLQ---GHTKPI 457 (567)
Q Consensus 397 I~iw-d~~~~~~~~~~~~------------~~~~~~~~~~~~-~l~~~~~dg~I~i~d~--~~~~~~~~~~---~h~~~V 457 (567)
-.|| ....++.-..... ....+++.|... .++++...+.|..-+- ++.+.+..+. .....+
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence 2233 3333433222211 124577777543 4445443444332211 2233322111 112457
Q ss_pred eEEEEcCC-CCEEEEEeC
Q 008393 458 DSVCWDPS-GELLASVSE 474 (567)
Q Consensus 458 ~~l~~sp~-g~~l~s~s~ 474 (567)
..|.++|. +..|+.+..
T Consensus 172 ~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASAT 189 (789)
T ss_dssp EEEEECTTSTTCEEEEES
T ss_pred EEEEECCCCCCEEEEEEc
Confidence 88999884 445555554
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.10 E-value=43 Score=32.12 Aligned_cols=260 Identities=9% Similarity=0.038 Sum_probs=132.9
Q ss_pred CeEEEEeCCCcEEEEeCCCCe---------eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc---CC-----CC
Q 008393 300 KLLATGGHDKKAVLWHTDTLK---------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DN-----PG 362 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~---------~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~---~~-----~~ 362 (567)
.++++.+.+|.|+--.+.+.+ .-..++ ..+.+..+........|+.-+..|.++.... .. .+
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 356777788888765543211 111122 2344555555555667777777887665543 22 12
Q ss_pred ceeEEec--cCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCee-------eEEEeC--CeeEEEEecCCCEEEE
Q 008393 363 YSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC-------TRVFKG--GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 363 ~~~~~~~--~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~-------~~~~~~--~~~~~~~~~~~~~l~~ 429 (567)
..+..+- .....|..+....+ ....++..+.+|.|+...+..... ...++. ....+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2211111 12345665544332 234556889999999988754221 112222 2333444455678999
Q ss_pred EECCCeEEEEECC--C---------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC----CceEE-
Q 008393 430 AAAENVVSILDAE--T---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECVH- 492 (567)
Q Consensus 430 ~~~dg~I~i~d~~--~---------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~----~~~i~- 492 (567)
.+..|.+..+... . |.....+. ....|.++...+++.+|+..+.. .++.-.+..... ..-+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999988888766 2 22212232 23557776666666677777777 888777643211 01122
Q ss_pred -EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-------Ee--ccccCCeeEEEEec-CCCEEEEEECCC
Q 008393 493 -ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------TL--TAHEGLIAALAVST-ETGYVASASHDK 561 (567)
Q Consensus 493 -~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-------~~--~~h~~~V~~l~~sp-dg~~l~s~s~Dg 561 (567)
.+......+..+....+...++..+.+|.+.-++...-... .. ......|.++...+ +...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222344555555555567888888888777765432211 11 12234566665543 334466665554
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=71.41 E-value=81 Score=30.95 Aligned_cols=163 Identities=9% Similarity=0.112 Sum_probs=90.7
Q ss_pred cEEEEeCCCC--eeeeeecc------cCccEEEEEEC---CC----CCeEEEEe-CCCcEEEEEcCCCCceeEEec----
Q 008393 310 KAVLWHTDTL--KSKTNLEE------HSSLITDVRFS---PS----MPRLATSS-FDKTVRVWDADNPGYSLRTFM---- 369 (567)
Q Consensus 310 ~I~vwd~~~~--~~~~~l~~------h~~~V~~i~fs---p~----~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~---- 369 (567)
+|.+||+.+. +.++++.- ....+..+++. ++ +.+++.+. ....|.|+|+.+ +...+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEEEEccCCCc
Confidence 6888999998 88877653 23457888887 22 33444444 366799999987 44434331
Q ss_pred ----------cC----CCcEEEEEEcCC----CCeEEEEEeCCCcEEEEE---CCCC---eeeEEE--eC---CeeEEEE
Q 008393 370 ----------GH----SASVMSLDFHPN----KDDLICSCDGDGEIRYWS---INNG---SCTRVF--KG---GTAQMRF 420 (567)
Q Consensus 370 ----------~h----~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd---~~~~---~~~~~~--~~---~~~~~~~ 420 (567)
+. ...|..|+++|+ ++.|++..-....++--. ++.. ..++.+ ++ ....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 236778888887 566665554433333332 1111 112222 22 1223456
Q ss_pred ecCCCEEE-EEECCCeEEEEECCC-C----eEEEEec-CCCCCeeEEEEcCCCCEEEEEe
Q 008393 421 QPHLGRYL-AAAAENVVSILDAET-Q----ACRLSLQ-GHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 421 ~~~~~~l~-~~~~dg~I~i~d~~~-~----~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s 473 (567)
.+..+.++ .-...+.|..|+..+ . ....... ..-..+..+.+..+|.+.+...
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 54445544 444578999999876 1 1111112 1233567788877776555443
No 364
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=67.03 E-value=1e+02 Score=30.43 Aligned_cols=226 Identities=8% Similarity=0.050 Sum_probs=113.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-----------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 399 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-----------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~i 399 (567)
.|..|+.. ....+.-..||.|+.|-....+. ..-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 36555543 44667778899999996543221 0011111234577776643 23335577999999
Q ss_pred EEC--CC-Cee---------eE-EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCC----------------------
Q 008393 400 WSI--NN-GSC---------TR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ---------------------- 444 (567)
Q Consensus 400 wd~--~~-~~~---------~~-~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---------------------- 444 (567)
|-. .. +.+ .. .+......+.+.......++...+|.|+.|-....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~ 230 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDL 230 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccc
Confidence 985 22 211 00 11122233444455567778888999999953321
Q ss_pred -eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC--------CCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 445 -ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 445 -~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~--------~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
.+..........|..|+..... .++.-..+ .|+.|-..... ..............|..++. -..+.+
T Consensus 231 ~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~ 307 (423)
T 3mvd_K 231 LRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTV 307 (423)
T ss_dssp SSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEE
T ss_pred cCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEE
Confidence 1111111122345555543221 22222344 77888654311 11111122222344554443 344567
Q ss_pred EEEcCCeEEEEECCCC---------c----EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 515 VIGCYQSLELWNMSEN---------K----TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~---------~----~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+...+|.|+.|-.... . ...+......|..|+... ...+.-..||.|+.|
T Consensus 308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 7778899999965321 1 112222233566666542 334444678888877
No 365
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=66.72 E-value=99 Score=30.18 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=21.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+..+.++......+.-..||.|+.|-..
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 45566777766777778889999999654
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.85 E-value=21 Score=40.11 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 326 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~ 326 (567)
...|.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3467888888899999999999999999999999887653
No 367
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=65.54 E-value=1.5e+02 Score=31.87 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeeccc-------CccEEEEEECCC-CCeEEEEeCC-------C
Q 008393 288 SKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPS-MPRLATSSFD-------K 351 (567)
Q Consensus 288 ~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h-------~~~V~~i~fsp~-~~~l~s~s~d-------g 351 (567)
+.|.+|+|+|.. ..++++...+.|..++- .++.-..+..+ ...|.+|+++|. ...|+.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 378899999964 45666666666666543 23322222221 245999999984 3445444321 1
Q ss_pred cEEEEEcCCCCceeEEecc-CC--------CcEEEEEEcCCCCeEEEEEe
Q 008393 352 TVRVWDADNPGYSLRTFMG-HS--------ASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~-h~--------~~V~~l~~~p~~~~li~s~~ 392 (567)
...||.....++....+.. .. ..+..|+++|.....++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2566666554544333321 11 12467899987655555555
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.25 E-value=2e+02 Score=32.10 Aligned_cols=38 Identities=11% Similarity=0.328 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
.+.+++..++.. ++++-+.|+++|+|++.++.++....
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeec
Confidence 466777776655 55588899999999999999987753
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.24 E-value=1.1e+02 Score=29.02 Aligned_cols=227 Identities=9% Similarity=0.031 Sum_probs=122.5
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeee---------eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC---C---
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSK---------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P--- 361 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~---------~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~---~--- 361 (567)
++..++++.+.+|.|+--.+...+.. ..++. .+.+..+........++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45667888999999998876544221 12232 33455555555566888888899877776532 0
Q ss_pred --Cce---eEEeccCCCcEEEEEEcC---CCCeEEEEEeCCCcEEEEECCCCe-------eeEEEeC--CeeEEEEecCC
Q 008393 362 --GYS---LRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGS-------CTRVFKG--GTAQMRFQPHL 424 (567)
Q Consensus 362 --~~~---~~~~~~h~~~V~~l~~~p---~~~~li~s~~~dg~I~iwd~~~~~-------~~~~~~~--~~~~~~~~~~~ 424 (567)
+.. ...+. ....|..+...+ +..+++ ..+..|.++...+.... ....+.. ....+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll-~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLL-LTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEE-EEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEE-EEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 111 01122 234455554433 234444 67889999998875432 1212222 23333344455
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC----CCCce
Q 008393 425 GRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SEGEC 490 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~----~~~~~ 490 (567)
..++..+.+|.+..+.... |.....+.. ...|.++..-.++..|++.+.. .++...+..- ....-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 7899999999998887643 222223332 3456666655556666667766 7887777432 10111
Q ss_pred EEEee---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 491 VHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 491 i~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
+..+. .....+..+....+...++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 12222 22334444333344555667777775443443
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=59.56 E-value=1.9e+02 Score=31.01 Aligned_cols=181 Identities=9% Similarity=0.034 Sum_probs=95.9
Q ss_pred EEE-EcCCCCeEEEEEeCCC----cEEEEECCCCeeeEE-EeCCe----------eEEEEecCCCEEEEEEC--------
Q 008393 377 SLD-FHPNKDDLICSCDGDG----EIRYWSINNGSCTRV-FKGGT----------AQMRFQPHLGRYLAAAA-------- 432 (567)
Q Consensus 377 ~l~-~~p~~~~li~s~~~dg----~I~iwd~~~~~~~~~-~~~~~----------~~~~~~~~~~~l~~~~~-------- 432 (567)
.+. ++|++++++++-+..| .|+++|+.+++.+.. |.... ..++|.. .+.++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcCc
Confidence 344 7888888887766544 699999999987631 22111 3347763 345554421
Q ss_pred ---CCeEEEEECCCC--eEEEEecCCCCC-eeEEEEcCCCC-----EEEEEeCC----eEEEEeCCCCCCCceEEEeecC
Q 008393 433 ---ENVVSILDAETQ--ACRLSLQGHTKP-IDSVCWDPSGE-----LLASVSED----SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 433 ---dg~I~i~d~~~~--~~~~~~~~h~~~-V~~l~~sp~g~-----~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
...|+.|.+.+. +-...+.+.... ..++..+.++. .+++.+.+ .+.+.+..... ..+..+...
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 289 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN--LKLQKINMP 289 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS--CEEEECCSC
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC--CcceEeecC
Confidence 246888887664 222334332222 33455666666 34444433 35555654211 122222222
Q ss_pred CCceEEEEEeCCCCeEEEE----------EcCCeEEEEECCCC--------cEEEec--cccCCeeEEEEecCCCEEEEE
Q 008393 498 GNKFHSCVFHPTYPSLLVI----------GCYQSLELWNMSEN--------KTMTLT--AHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~----------~~dg~I~iwd~~~~--------~~~~~~--~h~~~V~~l~~spdg~~l~s~ 557 (567)
... .+..+.++.+++.. ...+.|.++|+.+. ....+. .....+..+.|..+ .++++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 221 12334455444422 23567999998763 122222 23346778888765 567777
Q ss_pred ECCCcE
Q 008393 558 SHDKFV 563 (567)
Q Consensus 558 s~Dg~I 563 (567)
..++.-
T Consensus 367 ~~~~~~ 372 (711)
T 4hvt_A 367 YDNVVA 372 (711)
T ss_dssp EETTEE
T ss_pred EECCEE
Confidence 777653
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=59.00 E-value=1.4e+02 Score=29.16 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=125.5
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCC---------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC---C---
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD---N--- 360 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~---------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~---~--- 360 (567)
-++..++++.+.+|.|+--.+.. +.....++. .+.+..+........|+..+..|.++-+... .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46777899999999998765432 122233333 4556666666666778888888887666542 1
Q ss_pred --CCceeE---EeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCe-------eeEEEeC--CeeEEEEecCC
Q 008393 361 --PGYSLR---TFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS-------CTRVFKG--GTAQMRFQPHL 424 (567)
Q Consensus 361 --~~~~~~---~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~-------~~~~~~~--~~~~~~~~~~~ 424 (567)
.+..+. .+. ....|.++....+ ....++.++..|.++...+.... ....++. ....+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 122111 122 3455666544321 23345578899999998865322 1112222 23333444455
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEecCCCCCeeEEEEcC-------------------------------
Q 008393 425 GRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDP------------------------------- 464 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~V~~l~~sp------------------------------- 464 (567)
..++..+..|.+..|.... |.....+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888888888886532 11111222 234455554443
Q ss_pred ----CCCEEEEEeCC-eEEEEeCCCCC----CCceEE--EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 465 ----SGELLASVSED-SVRVWTVGSGS----EGECVH--ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 465 ----~g~~l~s~s~d-~I~iwd~~~~~----~~~~i~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
++..|++.+.. ..+...+.... ..+-+. .+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 34567777777 77777664321 111111 222233455555444555667777777766555543
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.84 E-value=82 Score=32.97 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=41.5
Q ss_pred eEEEEecCCCEEEEEECC------------CeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEE
Q 008393 416 AQMRFQPHLGRYLAAAAE------------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~d------------g~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~ 472 (567)
--+.|++.+..+++-..+ +.+.+++..+++....+.++ ...++.++|+||++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 457899987755544322 35777888888877766664 4679999999999988765
No 373
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=54.06 E-value=11 Score=23.31 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=8.1
Q ss_pred CCChhHHHHHH
Q 008393 68 RGDTDMLIKLK 78 (567)
Q Consensus 68 ~~~~~~~~~~~ 78 (567)
+++||+.+++.
T Consensus 1 sedPPiSiDLT 11 (42)
T 1go9_A 1 SEEPPISLDLT 11 (42)
T ss_dssp CCCCCHHHHHH
T ss_pred CCCCCcchhhH
Confidence 46788888665
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.00 E-value=1.5e+02 Score=28.03 Aligned_cols=188 Identities=11% Similarity=0.053 Sum_probs=103.2
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCC--------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPG--------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-- 408 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~--------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-- 408 (567)
++..++++.+.+|.|+-..+..-. .....+. ..+.+..+........++ ..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 466789999999999988765311 1111122 234455544444444444 5567888777665321100
Q ss_pred ----------EEEeCC--eeEEEEec---CCCEEEEEECCCeEEEEECCC-------CeEEEEecCCCCCeeEEEEcCCC
Q 008393 409 ----------RVFKGG--TAQMRFQP---HLGRYLAAAAENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 409 ----------~~~~~~--~~~~~~~~---~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
..+..+ +..+.... ....++.++..|.++...+.. +.....+.. .+.+..+....+.
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 012211 22222221 457789999999999887743 223333443 4556665555444
Q ss_pred CEEEEEeCC-eEEEEeCCC----CCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 467 ELLASVSED-SVRVWTVGS----GSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~----~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..|+..+.+ .+..+.+.. +....-+..+.. .+..+..+..-.++..|++.+..|.++.+++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 555555655 777776643 111111222221 245566666655667799999999988888754
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.64 E-value=1.5e+02 Score=27.83 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=109.8
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCc--------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC---
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGY--------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI---NN--- 404 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~---~~--- 404 (567)
|+..++++.+.+|.|+--.+..-.. ....+.. .+.+..+........++ ..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 3456788999999998877754110 0011222 23344444443444455 4456777665544 22
Q ss_pred ---CeeeE---EEeCC--eeEEEEe---cCCCEEEEEECCCeEEEEECCC-------CeEEEEecCCCCCeeEEEEcCCC
Q 008393 405 ---GSCTR---VFKGG--TAQMRFQ---PHLGRYLAAAAENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 405 ---~~~~~---~~~~~--~~~~~~~---~~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
|..+. .+..+ +..+... .++..++.++..|.++...+.. +.....+..+ +.+..+....+.
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22111 12222 2222221 2456789999999999887642 2222334434 555555444444
Q ss_pred CEEEEEeCC-eEEEEeCCCC----CCCceEE--EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--------
Q 008393 467 ELLASVSED-SVRVWTVGSG----SEGECVH--ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------- 531 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~----~~~~~i~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------- 531 (567)
..|+..+.+ .+..+....- ....-+. .+. .+..+..+....++..|++.+..|.++-.++..-.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 444444444 6555555321 1111111 222 34556666555556679999999988888764321
Q ss_pred EE--EeccccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 532 TM--TLTAHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 532 ~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
.. .+..-.+.+-.+....+...|+..+.+|.+
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 11 222223445444443344445556666654
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=51.34 E-value=1.5e+02 Score=27.38 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=71.4
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCe------eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 287 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 287 ~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|..+.... +..+++..+.+|.|+...+.... ....++. .+.+..+........|+..+..|.+..+...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 44555554321 46789999999999999876542 2223333 3456666666666789999999998888764
Q ss_pred C--------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 360 N--------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 360 ~--------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
. .+.....+. ....|..+....++..++ ..+..|.++...+..
T Consensus 146 eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll-~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLL-VITAKGRVKKISHEE 196 (276)
T ss_dssp GSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEE-EEETTSCEEEEEGGG
T ss_pred hCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEE-EEeCCCcEEEeEHHH
Confidence 2 111111222 235566665555544444 677889988887653
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.65 E-value=47 Score=34.80 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCeEEEEeCC------------CcEEEEeCCCCeeeeeeccc-CccEEEEEECCCCCeEEEE
Q 008393 290 VICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATS 347 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~d------------g~I~vwd~~~~~~~~~l~~h-~~~V~~i~fsp~~~~l~s~ 347 (567)
.-.|+|+++|.+++.-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568999999866654321 24666677778877766654 4579999999999887765
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.51 E-value=63 Score=33.65 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCCeEEEEeC------------CCcEEEEeCCCCeeeeeeccc-CccEEEEEECCCCCeEEEEe
Q 008393 288 SKVICCHFSSDGKLLATGGH------------DKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSS 348 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~------------dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fsp~~~~l~s~s 348 (567)
.....|.|+++|.+.+.... ...|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34567999999987773221 125677777778877666543 35689999999999887763
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.04 E-value=1.7e+02 Score=33.48 Aligned_cols=37 Identities=11% Similarity=0.323 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 375 V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
+.+++..++.. ++++-+.|+++|+|++.++.++.+..
T Consensus 240 ~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34444555544 55577889999999998888877653
No 380
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.66 E-value=2.1e+02 Score=27.27 Aligned_cols=151 Identities=13% Similarity=0.044 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEe---CCC------Ceeeee---ecccCccEEEEE-ECC--CCCeEEEEeCCCcE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWH---TDT------LKSKTN---LEEHSSLITDVR-FSP--SMPRLATSSFDKTV 353 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd---~~~------~~~~~~---l~~h~~~V~~i~-fsp--~~~~l~s~s~dg~I 353 (567)
.+..+........|+.-+..|.++... +.. |..+.. +. ....|.++. +.. +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 343444444444555555666655443 332 222211 22 234455554 432 57799999999999
Q ss_pred EEEEcCCC------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC--CCe---------eeEEEeC--C
Q 008393 354 RVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NGS---------CTRVFKG--G 414 (567)
Q Consensus 354 ~iwd~~~~------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~--~~~---------~~~~~~~--~ 414 (567)
+...+..- +.....+.. .+.+..+........++ ..+..|.+..+... .-. ....+.. .
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 99887531 111222333 34555555554445555 56778988888776 211 1111222 2
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
+..+.....+..++.++..|.++...+.
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 3334444455689999999998887754
No 381
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=45.41 E-value=1.1e+02 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=16.6
Q ss_pred eEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 008393 458 DSVCWDPSGELLASVSEDSVRVWTVGS 484 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d~I~iwd~~~ 484 (567)
..+.+..+|++++....+.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 45778888888776443343 787644
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.63 E-value=77 Score=32.97 Aligned_cols=60 Identities=5% Similarity=-0.035 Sum_probs=42.1
Q ss_pred CceEEEEEeCCCCeEEEEEc------------CCeEEEEECCCCcEEEecc--ccCCeeEEEEecCCCEEEEEE
Q 008393 499 NKFHSCVFHPTYPSLLVIGC------------YQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~------------dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s 558 (567)
.....|+|.++|.+.++... ...|+.++..+++...+.. ....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34577899999986553322 1268888887887765442 235689999999999887653
No 383
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.55 E-value=18 Score=41.50 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 326 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~ 326 (567)
..|.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 355667777888999999999999999999999887754
No 384
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=42.46 E-value=36 Score=20.87 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=5.8
Q ss_pred CChhHHHHHH
Q 008393 69 GDTDMLIKLK 78 (567)
Q Consensus 69 ~~~~~~~~~~ 78 (567)
++||+.+++.
T Consensus 1 edPpiSiDLT 10 (40)
T 2rmf_A 1 DNPSLSIDLT 10 (40)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCcchhhH
Confidence 3566776444
No 385
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.99 E-value=2.2e+02 Score=26.65 Aligned_cols=228 Identities=9% Similarity=0.043 Sum_probs=122.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeee---------eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC---C-----
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKT---------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD---N----- 360 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~---------~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~---~----- 360 (567)
+..++++.+.+|.|+--.+.+.+... .++. .+.+..+........|+..+..|.++-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678888899999887776543221 1222 2344455455556678888888876665542 2
Q ss_pred CCceeE---EeccCCCcEEEEEEc---CCCCeEEEEEeCCCcEEEEECCCCe-------eeEEEeC--CeeEEEEecCCC
Q 008393 361 PGYSLR---TFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKG--GTAQMRFQPHLG 425 (567)
Q Consensus 361 ~~~~~~---~~~~h~~~V~~l~~~---p~~~~li~s~~~dg~I~iwd~~~~~-------~~~~~~~--~~~~~~~~~~~~ 425 (567)
.+..+. .+. ....|.++... .++. .++..+.+|.++...+.... ....++. ....+.......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 122111 122 33456665442 2333 34477889999999775211 1111222 223333444557
Q ss_pred EEEEEECCCeEEEEECCC---------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC---C---Cc
Q 008393 426 RYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---E---GE 489 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~---~---~~ 489 (567)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+.. .++-.++.... . ..
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 888999999888887642 12222232 23556666555555667777776 77777764321 1 11
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
....+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1222333334555544444455677778888776666544
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.98 E-value=37 Score=36.38 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 327 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~ 327 (567)
..|.|+.+. ..+|++-+.|+++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346655553 67999999999999999999998877653
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.88 E-value=2e+02 Score=26.23 Aligned_cols=68 Identities=9% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-------EE-EeccccCCeeEEEEe-cCCCEEEEEECCCcEEEc
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TM-TLTAHEGLIAALAVS-TETGYVASASHDKFVKLW 566 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------~~-~~~~h~~~V~~l~~s-pdg~~l~s~s~Dg~I~iW 566 (567)
+..|..+....++.+|+.++..|.++...+..-. .. .+... ..+..+... .++..|+..+.+|.+..+
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 4456666443466778999999999988774321 11 23322 344444444 345577788888876543
No 388
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=37.94 E-value=1.3e+02 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=16.6
Q ss_pred eEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 008393 458 DSVCWDPSGELLASVSEDSVRVWTVGS 484 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d~I~iwd~~~ 484 (567)
..+.+..||++++....+ -.+|...+
T Consensus 53 ~~L~l~~dGnLvL~d~~~-~~vWss~t 78 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSG-RSLWASHS 78 (105)
T ss_dssp CEEEECTTSCEEEECTTC-CEEEECCC
T ss_pred EEEEEeCCccEEEECCCc-EEEEEecC
Confidence 357788899877764433 34676543
No 389
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=37.64 E-value=4.1e+02 Score=28.41 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=36.2
Q ss_pred cEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEeccC-------CCcEEEEEEcCCC-CeEEEEE
Q 008393 331 LITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNK-DDLICSC 391 (567)
Q Consensus 331 ~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-------~~~V~~l~~~p~~-~~li~s~ 391 (567)
.|..|+++|.. ..|+.+...+.|..++ ..+.....+..+ ...|.+|+++|.. +.+++..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 79999999864 4666676666555554 334444444332 2459999999854 3444443
No 390
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=36.72 E-value=4.3e+02 Score=28.40 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=71.1
Q ss_pred cCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEecc------------CCCcEEEEEEcCCC-CeEEEEEeC
Q 008393 328 HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMG------------HSASVMSLDFHPNK-DDLICSCDG 393 (567)
Q Consensus 328 h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~~p~~-~~li~s~~~ 393 (567)
-.+.|.+|+++|.+ ..++++...|.|... ...+.....+.. ....|.+|+++|.. +.+++..+.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S--~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRW--NAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEE--ETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEE--CCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45679999999976 466677766655433 333443333322 12458999998843 344443331
Q ss_pred ----CCcEEEE-ECCCCeeeEEEeC----------Ce--eEEEEecCC-CEEEEEECCCeEEEEEC--CCCeEEEEecC-
Q 008393 394 ----DGEIRYW-SINNGSCTRVFKG----------GT--AQMRFQPHL-GRYLAAAAENVVSILDA--ETQACRLSLQG- 452 (567)
Q Consensus 394 ----dg~I~iw-d~~~~~~~~~~~~----------~~--~~~~~~~~~-~~l~~~~~dg~I~i~d~--~~~~~~~~~~~- 452 (567)
.....|| ....++.-..... .. ..+.+.|.. +.+++++..+.|..-+- ++.+.+..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCccc
Confidence 0112333 3333432222211 11 357787754 45556555444332211 12222221111
Q ss_pred --CCCCeeEEEEcCCC-CEEEEEeCC
Q 008393 453 --HTKPIDSVCWDPSG-ELLASVSED 475 (567)
Q Consensus 453 --h~~~V~~l~~sp~g-~~l~s~s~d 475 (567)
....+..|+++|.. ..++.+..+
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 202 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHA 202 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESS
T ss_pred CCCccceEEEEECCCCCCEEEEEEeC
Confidence 11347788888743 344444444
No 391
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.16 E-value=79 Score=24.62 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=14.8
Q ss_pred eEEEEcCCCCEEEEEeCCeEEEEeC
Q 008393 458 DSVCWDPSGELLASVSEDSVRVWTV 482 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d~I~iwd~ 482 (567)
..+.+..+|++++....+.+.+|.-
T Consensus 52 ~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp CEEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 3567777888776544333346643
No 392
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.22 E-value=1.4e+02 Score=31.97 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=27.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.|.++.+. ..+|++-+.|+++|+|++.+ +.++...
T Consensus 223 ~Is~~~~~--~~fLftL~~Dh~LRiWsL~t-~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLFH--ERYLIVLTQNCHLKIWDLTS-FTLIQDY 257 (729)
T ss_dssp EEEEEEET--TTEEEEEETTCEEEEEETTT-TEEEEEE
T ss_pred eEEEeccC--CcEEEEEEcCCeEEEEEcCC-CceEEee
Confidence 46666653 67999999999999999998 5555544
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.50 E-value=4e+02 Score=25.86 Aligned_cols=225 Identities=10% Similarity=0.086 Sum_probs=108.1
Q ss_pred cEEEEEECCCCCeEEEEeCC-CcEEEEEcCCCCc----------eeEEecc-CCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 331 LITDVRFSPSMPRLATSSFD-KTVRVWDADNPGY----------SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~d-g~I~iwd~~~~~~----------~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.|..|+...+ ..+....| +.|+.|-....+. ....+.. ....|..|+.-. . ..+.-..||.|+
T Consensus 69 ~i~~va~G~~--ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~--~-h~~alt~~G~v~ 143 (406)
T 4d9s_A 69 QIVSVTCGAD--HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD--S-HCLAVTMEGEVQ 143 (406)
T ss_dssp CEEEEEECSS--EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--S-EEEEEETTSCEE
T ss_pred CEEEEEeCcc--eEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh--h-heEEEcCCCcEE
Confidence 5666665433 33333444 5899996532111 0111111 223577776642 2 333556799999
Q ss_pred EEECCCCee----------e-EEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCC----------eEE-EEecC-C
Q 008393 399 YWSINNGSC----------T-RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------ACR-LSLQG-H 453 (567)
Q Consensus 399 iwd~~~~~~----------~-~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~----------~~~-~~~~~-h 453 (567)
.|-....-. . ..+. .......+.......++...+|.|+.|-.... ... ..+.. .
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~ 223 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC
Confidence 997653210 1 1111 11233344445567777888999999964321 111 11111 1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC------Cc-e-EEEee-cCCCceEEEEEeCCCCeEEEEEcCCeEE
Q 008393 454 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------GE-C-VHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLE 523 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~------~~-~-i~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~I~ 523 (567)
...|..|+.. ....+....+ .|+.|-...... .. . ...+. .....|..++. -..+.++...+|.|+
T Consensus 224 ~~~i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~ 299 (406)
T 4d9s_A 224 GEKMSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLY 299 (406)
T ss_dssp TCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CceEEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEE
Confidence 2345555543 2233344455 788886543210 00 1 11111 11223444433 344566677889999
Q ss_pred EEECCCCc------------EEEec-cccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 524 LWNMSENK------------TMTLT-AHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 524 iwd~~~~~------------~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|-....- ...+. .....|..++.. ....+.-..||.|+.|
T Consensus 300 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 300 GWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp EEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 99654311 11111 122345555542 3344455677777777
No 394
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=27.21 E-value=6e+02 Score=27.20 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecc------------cCccEEEEEECCC-CCeEEEEeCC-
Q 008393 286 STSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEE------------HSSLITDVRFSPS-MPRLATSSFD- 350 (567)
Q Consensus 286 h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~------------h~~~V~~i~fsp~-~~~l~s~s~d- 350 (567)
-.+.|.+|+++|.+ ..++++...|.|...+ +.++.-..+.. ....|.+|+++|. ...|+.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 46789999999966 5666666666665443 22322222211 2245899999883 3444443321
Q ss_pred ----CcEEEEEcCCCCceeEEeccC-------CC--cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----
Q 008393 351 ----KTVRVWDADNPGYSLRTFMGH-------SA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 412 (567)
Q Consensus 351 ----g~I~iwd~~~~~~~~~~~~~h-------~~--~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----- 412 (567)
....||.-...++........ .+ ....|+++|.....++.+...+.|. .....++.-....
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 124555544445433333210 11 1246888876544444555444333 2222232222211
Q ss_pred ----CCeeEEEEecCC-CEEEEEECCC
Q 008393 413 ----GGTAQMRFQPHL-GRYLAAAAEN 434 (567)
Q Consensus 413 ----~~~~~~~~~~~~-~~l~~~~~dg 434 (567)
.....+.+.|.. +.++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 134567777754 4566666654
No 395
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.50 E-value=2.4e+02 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=13.1
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
.+.+..+|+.++ . ..++.+ +|.-.+
T Consensus 60 ~l~l~~dGNLVl-~-d~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDI-T-DDRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEE-E-CTTSCE-EEECSC
T ss_pred EEEEeCCCcEEE-E-CCCCCE-EEECCC
Confidence 456666665333 2 234443 676554
No 396
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=20.73 E-value=5.6e+02 Score=24.53 Aligned_cols=183 Identities=11% Similarity=0.084 Sum_probs=88.4
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCce-------eEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYS-------LRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---- 405 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~-------~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~---- 405 (567)
...++.-..||.|+.|=....+.. ..... .....|..|+.. ....+.-..||.|+.|-....
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGG---EQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCC
Confidence 345666667888888865542211 11100 011235555443 223335567999999965431
Q ss_pred ----eee---EEEe----CCeeEEEEecCCCEEEEEECCCeEEEEECCCC-----------eEEEEecC-CCCCeeEEEE
Q 008393 406 ----SCT---RVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----------ACRLSLQG-HTKPIDSVCW 462 (567)
Q Consensus 406 ----~~~---~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-----------~~~~~~~~-h~~~V~~l~~ 462 (567)
... ..+. ..+..+.+.......++...+|.|+.|-.... .....+.. ....|..|+.
T Consensus 87 ~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~ 166 (389)
T 3kci_A 87 IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA 166 (389)
T ss_dssp SSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe
Confidence 111 1111 12334566667778888899999999964321 11112221 1225655554
Q ss_pred cCCCCEEEEEeCC-eEEEEeCCCC------CCCceE--EEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 463 DPSGELLASVSED-SVRVWTVGSG------SEGECV--HEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 463 sp~g~~l~s~s~d-~I~iwd~~~~------~~~~~i--~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
. ....+....+ .|+.|-.... ...... ..+ ......+..++......+.++...+|.|+.|-..
T Consensus 167 G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 167 G--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp C--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred C--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 3 3344445555 8888865421 000111 111 1123456666665545677888889999999654
No 397
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.05 E-value=3.4e+02 Score=27.48 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=42.3
Q ss_pred ceEEEEEeC------CCCeEEEEEcCCeEE-EEECCCCc-------EE-Eec--cccCCeeEEEEecCCCEEEEEECCCc
Q 008393 500 KFHSCVFHP------TYPSLLVIGCYQSLE-LWNMSENK-------TM-TLT--AHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 500 ~i~~~~~sp------~~~~l~~~~~dg~I~-iwd~~~~~-------~~-~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.++.++... +...++.|+.+|.|. +.-...+. .+ .+. ....+|..|.++++..+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 466666553 234577788888653 33332221 11 222 34578999999999999999999887
Q ss_pred EEE
Q 008393 563 VKL 565 (567)
Q Consensus 563 I~i 565 (567)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
Done!