BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008394
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 358 LHWHGYPLKSMPSNICAEQ-LVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKT 416
L W G ++S+P++I Q L L++ NS + L + H KL ++ C L
Sbjct: 190 LEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYP 246
Query: 417 PNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPE-ISSSNTS 475
P L +L+ L+ +L +LP I L L LDL GC L RLP I+ +
Sbjct: 247 PIFGGRAPLKRLI---LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Query: 476 CLFL 479
C+ L
Sbjct: 304 CIIL 307
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 39/118 (33%), Gaps = 22/118 (18%)
Query: 419 PTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLF 478
P I +L L L +R S L +L I +L L LDL GC L+ P I
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 479 LSGTAXXXXXXXXXXXXXXXXXXXSDCXXXXXXXXXXXXXXXXEILDLSGCSNLQRLP 536
L DC E LDL GC NL RLP
Sbjct: 258 L---------------------ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 439 LKSLPAGIFNLEFLTTLDLSGCPKLKRLPE-ISSSNTS 475
L++LPA I +L L L + CP+L LPE ++S++ S
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 81 CRIIITTRNKQVLRN-WGVRKIYEME-ALEYHHALELFSRHA-FKQNHPDELSSKAVKYA 137
C+I++TTR+K V + G + + +E +L LE+ S K+ E + +K
Sbjct: 264 CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKEC 323
Query: 138 QGVPLALKVLGCFLYKMEKEVWDSAINKLQRIHHPSILQILKISYDGLDD 187
+G PL + ++G L W+ + +LQ I + Y+ LD+
Sbjct: 324 KGSPLVVSLIGALLRDFPNR-WEYYLKQLQNKQFKRIRKSSSYDYEALDE 372
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 81 CRIIITTRNKQVLRN-WGVRKIYEME-ALEYHHALELFSRHA-FKQNHPDELSSKAVKYA 137
C+I++TTR+K V + G + + +E +L LE+ S K+ E + +K
Sbjct: 258 CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKEC 317
Query: 138 QGVPLALKVLGCFLYKMEKEVWDSAINKLQRIHHPSILQILKISYDGLDD 187
+G PL + ++G L W+ + +LQ I + Y+ LD+
Sbjct: 318 KGSPLVVSLIGALLRDFPNR-WEYYLKQLQNKQFKRIRKSSSYDYEALDE 366
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 81 CRIIITTRNKQVLRN-WGVRKIYEMEA-LEYHHALELFSR--HAFKQNHPDELSSKAVKY 136
C+I++TTR+K V + G + + +E+ L LE+ S + K++ P E S +K
Sbjct: 258 CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHS-IIKE 316
Query: 137 AQGVPLALKVLGCFLYKMEKEVWDSAINKLQRIHHPSILQILKISYDGLDD 187
+G PL + ++G L W + +LQ I + Y+ LD+
Sbjct: 317 CKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQFKRIRKSSSYDYEALDE 366
>pdb|1XOU|B Chain B, Crystal Structure Of The Cesa-Espa Complex
Length = 95
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 83 IIITTRNKQVLRNWGVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPL 142
I+ TRNK++L + +R E+EA++ ++ + + +ELS KA Q
Sbjct: 3 IVSQTRNKELL-DKKIR--SEIEAIK-----KIIAEFDVVKESVNELSEKAKTDPQAAEK 54
Query: 143 ALKVLGCFLYKMEKEVWDSAINKLQRI 169
K++ + Y E++++DSA++K++++
Sbjct: 55 LNKLIEGYTYGEERKLYDSALSKIEKL 81
>pdb|2LHK|A Chain A, Structural Analysis Of A Chaperone In Type Iii Secretion
System
pdb|2LHK|B Chain B, Structural Analysis Of A Chaperone In Type Iii Secretion
System
Length = 107
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 83 IIITTRNKQVLRNWGVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPL 142
I+ TRNK++L + +R E+EA++ ++ + + +ELS KA Q
Sbjct: 3 IVSQTRNKELL-DKKIR--SEIEAIK-----KIIAEFDVVKESVNELSEKAKTDPQAAEK 54
Query: 143 ALKVLGCFLYKMEKEVWDSAINKLQRI 169
K++ + Y E++++DSA++K++++
Sbjct: 55 LNKLIEGYTYGEERKLYDSALSKIEKL 81
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 414 AKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFN-LEFLTTLDLSGCPKLKRLP 467
+T PT IP + L+L + SLKSLP G+F+ L LT L L G KL+ LP
Sbjct: 18 GRTSVPTGIPA--QTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLP 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,562,124
Number of Sequences: 62578
Number of extensions: 569200
Number of successful extensions: 1231
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 11
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)