Query 008394
Match_columns 567
No_of_seqs 271 out of 3201
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 23:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.4E-64 3E-69 576.9 51.1 530 1-553 186-835 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.3E-56 1.8E-60 479.4 24.4 255 2-258 161-499 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-34 2.5E-39 284.9 13.3 218 4-221 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3E-21 6.6E-26 221.1 18.5 263 284-556 69-345 (968)
5 KOG4194 Membrane glycoprotein 99.9 3.1E-22 6.6E-27 197.3 5.2 258 284-563 125-436 (873)
6 PLN00113 leucine-rich repeat r 99.9 6.3E-21 1.4E-25 218.4 16.1 268 284-561 93-375 (968)
7 KOG0444 Cytoskeletal regulator 99.8 9.9E-23 2.1E-27 202.1 -2.1 263 273-562 67-358 (1255)
8 KOG4194 Membrane glycoprotein 99.8 7E-22 1.5E-26 194.8 2.4 239 284-552 173-448 (873)
9 KOG0444 Cytoskeletal regulator 99.8 4.1E-20 8.8E-25 183.7 -1.1 206 352-563 102-313 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 8.5E-19 1.9E-23 166.0 0.2 88 473-562 436-546 (565)
11 KOG0617 Ras suppressor protein 99.7 4.6E-18 9.9E-23 142.9 -2.8 167 367-541 25-194 (264)
12 KOG0472 Leucine-rich repeat pr 99.6 2.3E-18 4.9E-23 163.2 -5.8 247 282-563 66-317 (565)
13 PRK15370 E3 ubiquitin-protein 99.6 8.2E-16 1.8E-20 165.7 12.9 226 287-561 181-406 (754)
14 PLN03210 Resistant to P. syrin 99.6 7.5E-15 1.6E-19 169.0 17.9 232 283-533 633-907 (1153)
15 PRK15370 E3 ubiquitin-protein 99.6 4.1E-15 8.8E-20 160.4 14.6 189 353-563 199-387 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 4.9E-15 1.1E-19 158.8 13.6 120 427-560 343-462 (788)
17 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.7E-22 139.5 -4.4 178 351-535 31-215 (264)
18 PRK15387 E3 ubiquitin-protein 99.6 5E-14 1.1E-18 151.2 15.9 186 353-564 242-443 (788)
19 KOG0618 Serine/threonine phosp 99.5 7.8E-16 1.7E-20 160.4 -1.4 243 282-554 239-487 (1081)
20 KOG0618 Serine/threonine phosp 99.4 3.2E-15 6.8E-20 156.0 -4.0 239 283-553 263-510 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.4 4.4E-14 9.6E-19 141.0 0.9 235 314-559 23-294 (319)
22 KOG4237 Extracellular matrix p 99.4 2.3E-14 5E-19 136.1 -3.4 242 283-531 66-358 (498)
23 TIGR00635 ruvB Holliday juncti 99.3 6.3E-11 1.4E-15 117.2 19.5 226 1-238 6-292 (305)
24 PRK00080 ruvB Holliday junctio 99.3 4E-11 8.6E-16 119.4 15.5 231 1-236 27-311 (328)
25 KOG4237 Extracellular matrix p 99.3 2.1E-13 4.5E-18 129.7 -1.0 209 353-564 67-343 (498)
26 cd00116 LRR_RI Leucine-rich re 99.2 1.1E-12 2.3E-17 131.1 -0.5 255 286-554 25-318 (319)
27 PRK04841 transcriptional regul 99.2 8.2E-10 1.8E-14 126.3 22.8 175 78-257 150-335 (903)
28 KOG1259 Nischarin, modulator o 99.2 4.2E-12 9E-17 116.6 1.2 209 351-566 212-422 (490)
29 KOG3207 Beta-tubulin folding c 99.1 8.9E-12 1.9E-16 120.3 1.2 204 351-557 119-340 (505)
30 KOG0532 Leucine-rich repeat (L 99.1 6.4E-12 1.4E-16 125.0 -1.9 177 374-561 74-252 (722)
31 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.3E-15 107.5 2.2 195 314-533 214-413 (490)
32 PF14580 LRR_9: Leucine-rich r 99.0 4.9E-10 1.1E-14 99.0 5.4 127 314-459 19-149 (175)
33 COG4886 Leucine-rich repeat (L 99.0 5.8E-10 1.3E-14 114.7 6.9 175 354-559 117-293 (394)
34 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.5E-16 123.3 -5.5 171 351-529 96-270 (722)
35 PF05496 RuvB_N: Holliday junc 99.0 6E-09 1.3E-13 94.0 12.1 153 1-153 26-227 (233)
36 PF14580 LRR_9: Leucine-rich r 98.9 6.6E-10 1.4E-14 98.2 3.9 16 491-506 109-124 (175)
37 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.5E-14 112.5 5.9 175 314-514 116-296 (394)
38 COG3899 Predicted ATPase [Gene 98.9 4.5E-08 9.7E-13 108.4 18.0 158 100-257 212-389 (849)
39 PF01637 Arch_ATPase: Archaeal 98.9 7.2E-09 1.6E-13 98.3 9.0 144 1-146 1-233 (234)
40 KOG3207 Beta-tubulin folding c 98.9 2.8E-10 6.2E-15 110.1 -1.1 186 373-560 119-318 (505)
41 PRK13342 recombination factor 98.8 4.2E-07 9E-12 93.5 20.1 145 1-150 14-199 (413)
42 KOG4658 Apoptotic ATPase [Sign 98.8 5.5E-09 1.2E-13 115.2 4.9 109 422-552 567-677 (889)
43 COG2255 RuvB Holliday junction 98.7 4.4E-07 9.6E-12 83.8 14.0 152 1-152 28-228 (332)
44 PLN03150 hypothetical protein; 98.7 2.9E-08 6.3E-13 107.1 7.5 107 427-533 419-529 (623)
45 COG3903 Predicted ATPase [Gene 98.7 4.6E-08 1E-12 95.3 7.8 233 20-258 12-318 (414)
46 PRK00411 cdc6 cell division co 98.7 2.3E-06 5E-11 88.0 20.7 228 1-235 32-358 (394)
47 COG2256 MGS1 ATPase related to 98.7 1.6E-07 3.5E-12 90.9 11.1 192 11-208 39-285 (436)
48 PRK12402 replication factor C 98.6 6E-06 1.3E-10 83.0 19.7 144 1-146 17-225 (337)
49 COG2909 MalT ATP-dependent tra 98.6 3.4E-06 7.3E-11 89.3 17.9 240 9-258 25-342 (894)
50 TIGR03015 pepcterm_ATPase puta 98.5 6.1E-06 1.3E-10 80.1 18.5 52 100-151 185-242 (269)
51 PRK14961 DNA polymerase III su 98.5 1.2E-05 2.6E-10 81.2 20.9 146 1-147 18-220 (363)
52 PLN03150 hypothetical protein; 98.5 1.9E-07 4.2E-12 100.8 8.1 92 421-512 437-532 (623)
53 PRK06893 DNA replication initi 98.5 1.7E-06 3.7E-11 81.3 13.4 127 23-149 40-205 (229)
54 PRK13341 recombination factor 98.5 1.2E-05 2.5E-10 87.4 21.1 139 1-144 30-214 (725)
55 TIGR02928 orc1/cdc6 family rep 98.5 1.3E-05 2.8E-10 81.5 20.0 190 1-197 17-298 (365)
56 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.8E-06 6.1E-11 80.1 13.8 145 4-150 22-204 (226)
57 PRK00440 rfc replication facto 98.5 1E-05 2.2E-10 80.7 18.3 144 1-146 19-202 (319)
58 KOG1909 Ran GTPase-activating 98.4 4E-08 8.7E-13 92.9 0.2 230 314-556 30-311 (382)
59 KOG0531 Protein phosphatase 1, 98.4 4E-08 8.6E-13 101.4 -0.2 100 353-460 95-196 (414)
60 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 67.2 3.8 56 474-529 3-59 (61)
61 KOG1909 Ran GTPase-activating 98.4 1.7E-08 3.7E-13 95.4 -3.3 183 314-507 92-310 (382)
62 PRK05564 DNA polymerase III su 98.4 3.7E-05 8.1E-10 76.1 20.0 144 1-147 6-190 (313)
63 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 7E-12 66.4 3.7 34 376-409 2-35 (61)
64 PRK07003 DNA polymerase III su 98.4 5.6E-05 1.2E-09 80.5 21.0 146 1-147 18-221 (830)
65 TIGR02397 dnaX_nterm DNA polym 98.3 5E-05 1.1E-09 76.9 20.2 147 1-149 16-220 (355)
66 PF05729 NACHT: NACHT domain 98.3 4.4E-06 9.5E-11 74.4 10.6 43 78-120 118-163 (166)
67 KOG0531 Protein phosphatase 1, 98.3 1.2E-07 2.7E-12 97.7 0.5 220 310-557 91-319 (414)
68 PRK08903 DnaA regulatory inact 98.3 1.3E-05 2.8E-10 75.5 14.3 144 7-151 28-203 (227)
69 PLN03025 replication factor C 98.3 1E-05 2.2E-10 80.3 13.9 143 1-145 15-198 (319)
70 PRK04195 replication factor C 98.3 3E-05 6.5E-10 81.5 18.1 178 1-183 16-239 (482)
71 PRK09087 hypothetical protein; 98.3 4.8E-06 1E-10 77.8 10.7 126 23-149 45-197 (226)
72 PRK15386 type III secretion pr 98.3 2.6E-06 5.7E-11 84.7 8.7 132 374-529 51-187 (426)
73 TIGR01242 26Sp45 26S proteasom 98.3 9.7E-06 2.1E-10 82.1 12.9 141 1-141 124-328 (364)
74 PRK15386 type III secretion pr 98.3 2.4E-06 5.2E-11 85.0 7.7 131 397-553 50-187 (426)
75 PRK14956 DNA polymerase III su 98.2 0.00012 2.5E-09 74.9 19.6 143 1-144 20-219 (484)
76 PRK06620 hypothetical protein; 98.2 3.5E-05 7.7E-10 71.3 14.7 121 23-145 45-187 (214)
77 PRK14963 DNA polymerase III su 98.2 6.9E-05 1.5E-09 78.3 18.3 144 1-145 16-215 (504)
78 PF13191 AAA_16: AAA ATPase do 98.2 2E-06 4.3E-11 78.2 6.0 49 1-49 2-51 (185)
79 PRK14960 DNA polymerase III su 98.2 2.8E-05 6.1E-10 81.8 14.9 144 1-145 17-217 (702)
80 KOG2120 SCF ubiquitin ligase, 98.2 4.7E-08 1E-12 90.4 -5.1 172 354-529 186-373 (419)
81 PRK14962 DNA polymerase III su 98.2 0.00012 2.5E-09 76.0 18.9 162 1-163 16-239 (472)
82 PRK08084 DNA replication initi 98.2 3.6E-05 7.8E-10 72.7 14.0 141 7-149 32-211 (235)
83 PRK07471 DNA polymerase III su 98.2 0.00013 2.8E-09 73.1 18.6 145 1-148 21-239 (365)
84 PRK14949 DNA polymerase III su 98.2 0.00012 2.5E-09 79.7 19.3 145 1-147 18-220 (944)
85 PRK14955 DNA polymerase III su 98.2 0.00011 2.3E-09 75.3 17.7 145 1-146 18-227 (397)
86 PRK06645 DNA polymerase III su 98.2 5.7E-05 1.2E-09 78.6 15.7 143 1-144 23-226 (507)
87 PTZ00202 tuzin; Provisional 98.2 0.00012 2.7E-09 72.7 17.0 56 1-60 264-320 (550)
88 PRK03992 proteasome-activating 98.1 3.3E-05 7.1E-10 78.6 13.7 141 1-141 133-337 (389)
89 PRK07940 DNA polymerase III su 98.1 7.9E-05 1.7E-09 75.3 16.1 145 1-148 7-214 (394)
90 PRK08727 hypothetical protein; 98.1 9.1E-05 2E-09 69.8 15.6 122 23-144 42-201 (233)
91 TIGR02881 spore_V_K stage V sp 98.1 3.5E-05 7.7E-10 74.1 12.8 122 1-122 8-193 (261)
92 TIGR00678 holB DNA polymerase 98.1 8.7E-05 1.9E-09 67.6 14.8 129 10-143 3-187 (188)
93 KOG0989 Replication factor C, 98.1 0.00022 4.7E-09 67.1 17.1 139 1-141 38-224 (346)
94 KOG1859 Leucine-rich repeat pr 98.1 7.2E-08 1.6E-12 99.3 -6.3 125 374-506 163-290 (1096)
95 KOG1859 Leucine-rich repeat pr 98.1 3.1E-08 6.6E-13 101.9 -9.0 177 351-559 107-295 (1096)
96 PRK14957 DNA polymerase III su 98.1 7.2E-05 1.6E-09 78.4 15.4 146 1-147 18-221 (546)
97 PRK12323 DNA polymerase III su 98.1 0.0002 4.3E-09 75.3 18.2 146 1-147 18-225 (700)
98 COG1222 RPT1 ATP-dependent 26S 98.1 5.2E-05 1.1E-09 72.7 12.4 164 3-166 155-392 (406)
99 PRK09111 DNA polymerase III su 98.1 0.00025 5.3E-09 75.6 18.7 147 1-148 26-234 (598)
100 KOG2982 Uncharacterized conser 98.1 1.8E-06 3.8E-11 80.2 2.3 104 354-461 46-157 (418)
101 PRK14970 DNA polymerase III su 98.1 0.00033 7.1E-09 71.2 18.9 145 1-146 19-208 (367)
102 PRK09112 DNA polymerase III su 98.0 0.0002 4.4E-09 71.4 16.5 147 1-148 25-241 (351)
103 PRK05896 DNA polymerase III su 98.0 0.00013 2.8E-09 76.7 15.4 144 1-145 18-218 (605)
104 PRK14964 DNA polymerase III su 98.0 0.00013 2.9E-09 75.3 15.1 144 1-145 15-215 (491)
105 PRK07764 DNA polymerase III su 98.0 0.00043 9.3E-09 76.4 19.9 144 1-145 17-219 (824)
106 PTZ00112 origin recognition co 98.0 0.00015 3.2E-09 78.0 15.2 47 1-47 757-806 (1164)
107 PRK14959 DNA polymerase III su 98.0 0.00038 8.2E-09 73.6 18.0 150 1-151 18-225 (624)
108 PF00308 Bac_DnaA: Bacterial d 98.0 0.00015 3.3E-09 67.5 13.5 124 22-145 34-206 (219)
109 PRK08691 DNA polymerase III su 98.0 0.00033 7.2E-09 74.6 17.3 146 1-147 18-220 (709)
110 KOG2028 ATPase related to the 98.0 2E-05 4.4E-10 75.3 7.1 121 19-142 159-331 (554)
111 PRK14951 DNA polymerase III su 97.9 0.00085 1.8E-08 71.5 19.7 145 1-146 18-224 (618)
112 PRK07994 DNA polymerase III su 97.9 0.0002 4.3E-09 76.4 14.7 146 1-147 18-220 (647)
113 PHA02544 44 clamp loader, smal 97.9 0.00027 5.9E-09 70.3 15.1 117 1-118 23-171 (316)
114 PRK14954 DNA polymerase III su 97.9 0.0013 2.8E-08 70.3 20.7 141 1-142 18-223 (620)
115 PRK07133 DNA polymerase III su 97.9 0.00031 6.8E-09 75.4 15.7 145 1-146 20-218 (725)
116 PRK05642 DNA replication initi 97.9 0.00057 1.2E-08 64.4 15.8 127 23-149 46-210 (234)
117 PRK14952 DNA polymerase III su 97.9 0.0014 3.1E-08 69.5 20.3 141 1-142 15-214 (584)
118 KOG1644 U2-associated snRNP A' 97.9 2.4E-05 5.3E-10 68.8 5.9 105 353-460 42-150 (233)
119 PRK06305 DNA polymerase III su 97.9 0.00051 1.1E-08 71.1 16.6 142 1-144 19-219 (451)
120 PRK14950 DNA polymerase III su 97.9 0.0011 2.4E-08 71.2 19.7 148 1-149 18-223 (585)
121 PRK14948 DNA polymerase III su 97.9 0.0018 3.9E-08 69.6 21.0 148 1-149 18-224 (620)
122 PRK14958 DNA polymerase III su 97.9 0.00023 4.9E-09 74.7 13.9 145 1-146 18-219 (509)
123 PRK14969 DNA polymerase III su 97.8 0.00074 1.6E-08 71.4 17.4 143 1-144 18-217 (527)
124 KOG2120 SCF ubiquitin ligase, 97.8 5.6E-07 1.2E-11 83.4 -5.4 152 352-506 209-374 (419)
125 PRK14087 dnaA chromosomal repl 97.8 0.00031 6.8E-09 72.7 13.9 129 23-151 142-323 (450)
126 TIGR02903 spore_lon_C ATP-depe 97.8 0.00044 9.5E-09 74.5 14.8 44 1-46 156-199 (615)
127 PTZ00454 26S protease regulato 97.8 0.00045 9.8E-09 70.1 13.9 141 1-141 147-351 (398)
128 PRK08451 DNA polymerase III su 97.8 0.0011 2.4E-08 69.3 16.6 146 1-147 16-218 (535)
129 PRK14953 DNA polymerase III su 97.8 0.0012 2.5E-08 69.0 16.9 147 1-148 18-221 (486)
130 PF14516 AAA_35: AAA-like doma 97.7 0.007 1.5E-07 60.3 21.7 54 99-154 193-246 (331)
131 KOG4579 Leucine-rich repeat (L 97.7 1.9E-06 4E-11 70.8 -3.1 47 482-529 87-133 (177)
132 PRK06647 DNA polymerase III su 97.7 0.0026 5.7E-08 67.5 19.5 145 1-147 18-220 (563)
133 TIGR02880 cbbX_cfxQ probable R 97.7 0.00041 8.9E-09 67.4 12.5 122 1-122 24-210 (284)
134 PF12799 LRR_4: Leucine Rich r 97.7 2.9E-05 6.4E-10 51.5 3.1 40 520-560 2-41 (44)
135 cd00009 AAA The AAA+ (ATPases 97.7 8.6E-05 1.9E-09 64.3 7.0 54 2-57 1-54 (151)
136 PRK14971 DNA polymerase III su 97.7 0.0024 5.2E-08 68.7 19.1 145 1-146 19-221 (614)
137 PF13173 AAA_14: AAA domain 97.7 0.00013 2.7E-09 61.9 7.7 87 23-112 3-127 (128)
138 PRK09376 rho transcription ter 97.7 0.0001 2.3E-09 72.8 7.6 66 21-92 168-234 (416)
139 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00035 7.6E-09 78.0 12.4 45 1-47 189-233 (852)
140 PRK07399 DNA polymerase III su 97.7 0.0036 7.9E-08 61.5 18.0 146 1-149 6-223 (314)
141 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.4E-10 87.1 0.4 15 491-505 216-230 (699)
142 KOG4579 Leucine-rich repeat (L 97.6 2.3E-06 4.9E-11 70.3 -4.1 35 375-409 53-87 (177)
143 PRK05563 DNA polymerase III su 97.6 0.0014 3E-08 69.9 15.6 144 1-145 18-218 (559)
144 PTZ00361 26 proteosome regulat 97.6 0.00066 1.4E-08 69.4 12.1 140 2-141 186-389 (438)
145 CHL00181 cbbX CbbX; Provisiona 97.6 0.0013 2.8E-08 63.9 13.5 122 1-122 25-211 (287)
146 TIGR02639 ClpA ATP-dependent C 97.6 0.00046 9.9E-09 76.4 11.6 44 1-46 184-227 (731)
147 KOG4341 F-box protein containi 97.6 1.3E-06 2.8E-11 84.8 -7.5 156 397-553 266-436 (483)
148 TIGR03689 pup_AAA proteasome A 97.5 0.00076 1.7E-08 70.1 11.9 46 2-47 185-241 (512)
149 PF12799 LRR_4: Leucine Rich r 97.5 8.4E-05 1.8E-09 49.3 3.1 35 474-508 3-37 (44)
150 TIGR01241 FtsH_fam ATP-depende 97.5 0.0019 4E-08 68.4 14.8 141 1-141 57-260 (495)
151 CHL00176 ftsH cell division pr 97.5 0.0013 2.9E-08 70.6 13.8 140 1-140 185-387 (638)
152 COG1223 Predicted ATPase (AAA+ 97.5 0.0023 5E-08 58.8 12.5 140 2-141 124-319 (368)
153 PRK14965 DNA polymerase III su 97.5 0.0018 4E-08 69.3 13.9 146 1-147 18-221 (576)
154 PF14532 Sigma54_activ_2: Sigm 97.4 0.00025 5.5E-09 60.9 5.9 89 2-90 1-110 (138)
155 PRK00149 dnaA chromosomal repl 97.4 0.0021 4.5E-08 67.1 13.6 145 22-166 148-349 (450)
156 KOG2982 Uncharacterized conser 97.4 8E-05 1.7E-09 69.5 2.5 173 353-527 97-287 (418)
157 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0023 4.9E-08 66.6 13.5 140 2-141 231-429 (489)
158 PRK05707 DNA polymerase III su 97.4 0.0049 1.1E-07 61.0 15.2 125 21-147 21-203 (328)
159 COG0466 Lon ATP-dependent Lon 97.4 0.00073 1.6E-08 70.8 9.6 50 2-51 326-379 (782)
160 PRK14088 dnaA chromosomal repl 97.4 0.0033 7.2E-08 65.1 14.1 124 22-145 130-303 (440)
161 PRK08118 topology modulation p 97.4 0.00017 3.6E-09 64.1 4.0 34 23-56 2-38 (167)
162 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0037 8.1E-08 60.0 13.5 22 24-45 23-44 (262)
163 TIGR00362 DnaA chromosomal rep 97.4 0.0034 7.3E-08 64.7 14.0 123 23-145 137-308 (405)
164 PF00004 AAA: ATPase family as 97.3 0.00072 1.6E-08 57.4 7.4 66 25-90 1-112 (132)
165 COG1618 Predicted nucleotide k 97.3 0.00026 5.6E-09 60.2 4.3 40 22-61 5-46 (179)
166 KOG1644 U2-associated snRNP A' 97.3 0.00041 8.9E-09 61.3 5.7 123 356-506 22-151 (233)
167 cd01128 rho_factor Transcripti 97.3 0.00045 9.8E-09 65.3 6.6 41 22-62 16-57 (249)
168 smart00763 AAA_PrkA PrkA AAA d 97.3 0.0003 6.4E-09 69.2 5.2 47 1-47 53-103 (361)
169 PF13207 AAA_17: AAA domain; P 97.3 0.00022 4.7E-09 59.7 3.7 23 24-46 1-23 (121)
170 COG5238 RNA1 Ran GTPase-activa 97.3 4.5E-05 9.8E-10 70.1 -0.5 198 353-553 30-282 (388)
171 KOG3665 ZYG-1-like serine/thre 97.3 4.8E-05 1E-09 82.3 -0.6 83 374-461 147-231 (699)
172 TIGR01243 CDC48 AAA family ATP 97.3 0.0033 7.2E-08 69.8 13.7 140 2-141 456-657 (733)
173 PRK13531 regulatory ATPase Rav 97.3 0.0022 4.7E-08 65.7 11.0 41 1-45 22-62 (498)
174 PRK06696 uridine kinase; Valid 97.2 0.00083 1.8E-08 62.9 6.8 47 3-49 2-49 (223)
175 KOG0730 AAA+-type ATPase [Post 97.2 0.0043 9.3E-08 64.6 12.1 138 3-140 438-636 (693)
176 PRK12422 chromosomal replicati 97.1 0.0048 1E-07 63.8 12.2 118 23-140 142-306 (445)
177 KOG2035 Replication factor C, 97.1 0.031 6.7E-07 52.2 15.8 85 101-185 180-282 (351)
178 PLN00020 ribulose bisphosphate 97.1 0.0064 1.4E-07 59.7 12.0 121 20-142 146-333 (413)
179 TIGR01243 CDC48 AAA family ATP 97.1 0.0079 1.7E-07 66.9 14.4 142 1-142 180-382 (733)
180 TIGR02902 spore_lonB ATP-depen 97.1 0.0056 1.2E-07 65.0 12.5 43 1-45 67-109 (531)
181 KOG2739 Leucine-rich acidic nu 97.1 0.00021 4.5E-09 65.8 1.5 107 351-460 41-153 (260)
182 COG5238 RNA1 Ran GTPase-activa 97.0 0.00021 4.5E-09 65.9 0.9 182 374-557 29-256 (388)
183 PRK07667 uridine kinase; Provi 97.0 0.0018 4E-08 59.1 7.0 42 8-49 3-44 (193)
184 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0085 1.8E-07 61.8 12.1 42 3-44 194-245 (802)
185 COG1474 CDC6 Cdc6-related prot 97.0 0.078 1.7E-06 53.3 18.9 49 1-49 19-69 (366)
186 CHL00095 clpC Clp protease ATP 97.0 0.00083 1.8E-08 75.3 5.4 45 1-47 181-225 (821)
187 COG0542 clpA ATP-binding subun 97.0 0.0029 6.3E-08 68.2 9.1 90 1-90 493-644 (786)
188 COG0572 Udk Uridine kinase [Nu 97.0 0.0039 8.5E-08 56.7 8.6 115 20-135 6-148 (218)
189 PRK11034 clpA ATP-dependent Cl 97.0 0.0045 9.8E-08 68.0 10.8 44 1-46 188-231 (758)
190 KOG0731 AAA+-type ATPase conta 97.0 0.014 3E-07 62.7 13.9 143 2-145 314-522 (774)
191 KOG0727 26S proteasome regulat 97.0 0.0091 2E-07 54.6 10.7 43 3-45 159-212 (408)
192 PRK14086 dnaA chromosomal repl 96.9 0.013 2.8E-07 62.0 13.3 119 23-141 315-482 (617)
193 PRK08058 DNA polymerase III su 96.9 0.035 7.5E-07 55.3 15.9 138 2-145 8-202 (329)
194 TIGR02639 ClpA ATP-dependent C 96.9 0.0076 1.6E-07 66.9 12.2 46 1-46 456-508 (731)
195 PRK05541 adenylylsulfate kinas 96.9 0.0014 3.1E-08 58.9 5.1 37 21-57 6-42 (176)
196 PRK11331 5-methylcytosine-spec 96.9 0.002 4.2E-08 65.4 6.5 54 2-59 178-233 (459)
197 PRK15455 PrkA family serine pr 96.9 0.0014 3E-08 68.0 5.4 48 1-48 78-129 (644)
198 TIGR03345 VI_ClpV1 type VI sec 96.9 0.022 4.7E-07 63.9 15.1 46 1-46 568-620 (852)
199 PRK10787 DNA-binding ATP-depen 96.8 0.0077 1.7E-07 66.7 10.9 120 1-120 324-506 (784)
200 PRK08769 DNA polymerase III su 96.8 0.064 1.4E-06 52.7 16.1 137 7-148 12-209 (319)
201 COG0593 DnaA ATPase involved i 96.8 0.04 8.6E-07 55.5 14.7 116 22-137 113-276 (408)
202 TIGR00767 rho transcription te 96.8 0.0033 7.2E-08 62.7 7.0 42 22-63 168-210 (415)
203 PF01583 APS_kinase: Adenylyls 96.8 0.0026 5.6E-08 55.1 5.4 35 23-57 3-37 (156)
204 PF13238 AAA_18: AAA domain; P 96.8 0.0012 2.6E-08 55.7 3.5 22 25-46 1-22 (129)
205 KOG2004 Mitochondrial ATP-depe 96.7 0.0015 3.2E-08 68.4 4.4 50 2-51 414-467 (906)
206 KOG0734 AAA+-type ATPase conta 96.7 0.006 1.3E-07 61.8 8.5 123 3-125 308-492 (752)
207 KOG2739 Leucine-rich acidic nu 96.7 0.00079 1.7E-08 62.1 2.2 40 421-460 60-101 (260)
208 KOG0728 26S proteasome regulat 96.7 0.026 5.7E-07 51.6 11.7 137 3-139 151-351 (404)
209 KOG0736 Peroxisome assembly fa 96.7 0.016 3.4E-07 61.5 11.7 135 3-138 676-876 (953)
210 COG0464 SpoVK ATPases of the A 96.7 0.017 3.6E-07 61.3 12.2 120 20-139 274-445 (494)
211 PRK07261 topology modulation p 96.7 0.0014 3.1E-08 58.5 3.3 33 24-56 2-37 (171)
212 PRK10865 protein disaggregatio 96.7 0.0021 4.6E-08 72.1 5.3 46 1-48 180-225 (857)
213 cd01133 F1-ATPase_beta F1 ATP 96.6 0.007 1.5E-07 57.6 7.9 71 21-91 68-139 (274)
214 PRK06871 DNA polymerase III su 96.6 0.11 2.4E-06 51.2 16.4 135 7-145 10-201 (325)
215 PF00485 PRK: Phosphoribulokin 96.6 0.0019 4.1E-08 59.1 3.9 25 24-48 1-25 (194)
216 KOG0741 AAA+-type ATPase [Post 96.6 0.03 6.6E-07 56.9 12.3 116 20-137 536-704 (744)
217 TIGR03346 chaperone_ClpB ATP-d 96.6 0.051 1.1E-06 61.4 15.9 45 1-45 567-618 (852)
218 PRK06964 DNA polymerase III su 96.6 0.089 1.9E-06 52.2 15.7 65 78-148 160-226 (342)
219 PRK11034 clpA ATP-dependent Cl 96.6 0.021 4.5E-07 62.9 12.3 46 1-46 460-512 (758)
220 PF13401 AAA_22: AAA domain; P 96.6 0.0022 4.8E-08 54.3 3.9 53 22-74 4-62 (131)
221 PRK09361 radB DNA repair and r 96.6 0.0085 1.8E-07 56.3 8.2 63 9-72 10-72 (225)
222 PRK09270 nucleoside triphospha 96.6 0.0037 8.1E-08 58.8 5.6 30 20-49 31-60 (229)
223 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0031 6.7E-08 71.0 5.6 46 1-48 175-220 (852)
224 KOG4341 F-box protein containi 96.5 0.00011 2.5E-09 71.7 -5.1 203 351-554 162-412 (483)
225 PRK04040 adenylate kinase; Pro 96.5 0.0029 6.3E-08 57.3 4.1 30 23-52 3-32 (188)
226 smart00382 AAA ATPases associa 96.5 0.0028 6.1E-08 54.2 3.9 35 23-57 3-37 (148)
227 PTZ00301 uridine kinase; Provi 96.5 0.0045 9.7E-08 57.0 5.3 29 22-50 3-31 (210)
228 PF05673 DUF815: Protein of un 96.5 0.021 4.5E-07 53.0 9.5 75 1-75 29-132 (249)
229 PRK06090 DNA polymerase III su 96.5 0.27 5.8E-06 48.4 17.8 135 7-148 11-202 (319)
230 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0052 1.1E-07 51.7 4.9 41 6-46 6-46 (133)
231 PRK00625 shikimate kinase; Pro 96.4 0.0026 5.7E-08 56.6 3.3 24 24-47 2-25 (173)
232 COG0465 HflB ATP-dependent Zn 96.4 0.034 7.3E-07 58.6 11.9 140 2-141 153-355 (596)
233 PRK03839 putative kinase; Prov 96.4 0.0027 5.8E-08 57.3 3.5 24 24-47 2-25 (180)
234 PF13671 AAA_33: AAA domain; P 96.4 0.003 6.5E-08 54.5 3.5 23 24-46 1-23 (143)
235 PF07726 AAA_3: ATPase family 96.4 0.0017 3.7E-08 53.6 1.8 27 25-51 2-28 (131)
236 PF00910 RNA_helicase: RNA hel 96.4 0.0024 5.1E-08 52.0 2.6 24 25-48 1-24 (107)
237 PRK06547 hypothetical protein; 96.4 0.0056 1.2E-07 54.5 5.2 28 19-46 12-39 (172)
238 TIGR02237 recomb_radB DNA repa 96.4 0.011 2.4E-07 54.7 7.5 58 14-72 4-61 (209)
239 COG2812 DnaX DNA polymerase II 96.4 0.097 2.1E-06 54.4 14.8 140 1-141 18-214 (515)
240 PF00448 SRP54: SRP54-type pro 96.4 0.0066 1.4E-07 55.4 5.7 28 22-49 1-28 (196)
241 PF00158 Sigma54_activat: Sigm 96.4 0.0043 9.4E-08 55.0 4.4 45 1-45 1-45 (168)
242 PRK07993 DNA polymerase III su 96.4 0.14 3E-06 50.9 15.5 137 7-147 10-204 (334)
243 cd01394 radB RadB. The archaea 96.4 0.0091 2E-07 55.7 6.8 52 8-59 5-56 (218)
244 PRK05480 uridine/cytidine kina 96.3 0.0037 8E-08 58.0 4.0 27 20-46 4-30 (209)
245 PHA00729 NTP-binding motif con 96.3 0.0063 1.4E-07 56.1 5.4 28 20-47 15-42 (226)
246 PRK08233 hypothetical protein; 96.3 0.0034 7.4E-08 56.7 3.7 26 22-47 3-28 (182)
247 cd02019 NK Nucleoside/nucleoti 96.3 0.0034 7.4E-08 46.4 3.0 23 24-46 1-23 (69)
248 KOG2123 Uncharacterized conser 96.3 0.0003 6.4E-09 65.1 -3.2 98 426-525 19-123 (388)
249 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.011 2.5E-07 55.8 7.4 66 10-75 7-78 (235)
250 TIGR00064 ftsY signal recognit 96.3 0.011 2.4E-07 56.9 7.2 38 20-57 70-107 (272)
251 PRK10733 hflB ATP-dependent me 96.3 0.042 9E-07 59.9 12.2 118 23-140 186-356 (644)
252 KOG1532 GTPase XAB1, interacts 96.3 0.008 1.7E-07 55.7 5.6 33 20-52 17-49 (366)
253 PRK06762 hypothetical protein; 96.3 0.0042 9.1E-08 55.2 3.8 24 23-46 3-26 (166)
254 PRK00131 aroK shikimate kinase 96.2 0.004 8.6E-08 55.8 3.5 25 22-46 4-28 (175)
255 KOG0726 26S proteasome regulat 96.2 0.021 4.6E-07 53.5 8.0 43 3-45 189-242 (440)
256 TIGR00390 hslU ATP-dependent p 96.2 0.007 1.5E-07 60.8 5.3 50 1-50 14-75 (441)
257 PRK12377 putative replication 96.2 0.0091 2E-07 56.4 5.9 36 22-57 101-136 (248)
258 KOG2123 Uncharacterized conser 96.2 0.00012 2.6E-09 67.6 -6.5 99 354-456 20-123 (388)
259 PRK11889 flhF flagellar biosyn 96.2 0.012 2.5E-07 58.7 6.7 29 21-49 240-268 (436)
260 COG1373 Predicted ATPase (AAA+ 96.2 0.069 1.5E-06 54.5 12.6 119 24-147 39-192 (398)
261 COG1224 TIP49 DNA helicase TIP 96.2 0.011 2.4E-07 57.1 6.2 74 1-74 41-118 (450)
262 TIGR00235 udk uridine kinase. 96.2 0.0056 1.2E-07 56.6 4.3 28 20-47 4-31 (207)
263 PRK10463 hydrogenase nickel in 96.1 0.011 2.5E-07 56.6 6.2 41 20-60 102-142 (290)
264 PRK00889 adenylylsulfate kinas 96.1 0.0087 1.9E-07 53.7 5.2 27 22-48 4-30 (175)
265 PF03308 ArgK: ArgK protein; 96.1 0.017 3.6E-07 53.9 7.0 49 7-55 14-63 (266)
266 PRK08699 DNA polymerase III su 96.1 0.08 1.7E-06 52.4 12.3 59 79-143 142-202 (325)
267 cd01393 recA_like RecA is a b 96.1 0.02 4.3E-07 53.8 7.8 65 9-73 6-76 (226)
268 KOG0991 Replication factor C, 96.1 0.0081 1.8E-07 54.4 4.7 44 1-46 29-72 (333)
269 PRK07952 DNA replication prote 96.1 0.014 3.1E-07 54.9 6.7 51 7-57 84-134 (244)
270 PRK05201 hslU ATP-dependent pr 96.1 0.0087 1.9E-07 60.1 5.4 49 1-49 17-77 (443)
271 PF13177 DNA_pol3_delta2: DNA 96.1 0.064 1.4E-06 47.3 10.4 43 3-46 1-43 (162)
272 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0054 1.2E-07 55.7 3.7 26 21-46 2-27 (188)
273 cd02028 UMPK_like Uridine mono 96.1 0.0079 1.7E-07 54.1 4.7 26 24-49 1-26 (179)
274 KOG0729 26S proteasome regulat 96.1 0.023 5E-07 52.5 7.5 43 3-45 181-234 (435)
275 KOG0744 AAA+-type ATPase [Post 96.1 0.0085 1.8E-07 57.0 4.9 35 22-56 177-215 (423)
276 PF02562 PhoH: PhoH-like prote 96.0 0.03 6.4E-07 51.0 8.1 50 4-57 5-56 (205)
277 PRK13947 shikimate kinase; Pro 96.0 0.0053 1.2E-07 54.8 3.3 24 24-47 3-26 (171)
278 PF10443 RNA12: RNA12 protein; 96.0 2 4.4E-05 43.4 22.4 39 4-44 1-40 (431)
279 PF03205 MobB: Molybdopterin g 96.0 0.011 2.4E-07 50.6 5.0 35 23-57 1-36 (140)
280 KOG0733 Nuclear AAA ATPase (VC 96.0 0.035 7.6E-07 57.5 9.2 100 22-121 545-693 (802)
281 TIGR01817 nifA Nif-specific re 96.0 0.036 7.7E-07 59.4 10.0 45 1-45 198-242 (534)
282 PF07728 AAA_5: AAA domain (dy 96.0 0.0055 1.2E-07 52.6 3.1 22 25-46 2-23 (139)
283 cd00227 CPT Chloramphenicol (C 96.0 0.0065 1.4E-07 54.5 3.7 25 23-47 3-27 (175)
284 CHL00095 clpC Clp protease ATP 96.0 0.038 8.2E-07 62.2 10.3 46 1-46 511-563 (821)
285 PRK14738 gmk guanylate kinase; 95.9 0.0069 1.5E-07 55.9 3.7 31 15-45 6-36 (206)
286 PRK03846 adenylylsulfate kinas 95.9 0.013 2.7E-07 53.8 5.4 38 20-57 22-59 (198)
287 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.0056 1.2E-07 55.4 3.0 23 24-46 1-23 (183)
288 PF03266 NTPase_1: NTPase; In 95.9 0.0092 2E-07 52.9 4.2 32 25-56 2-34 (168)
289 COG1102 Cmk Cytidylate kinase 95.9 0.007 1.5E-07 51.7 3.1 24 24-47 2-25 (179)
290 PF06068 TIP49: TIP49 C-termin 95.9 0.013 2.8E-07 57.4 5.3 75 1-75 26-104 (398)
291 cd02020 CMPK Cytidine monophos 95.9 0.0067 1.4E-07 52.5 3.1 24 24-47 1-24 (147)
292 PRK13949 shikimate kinase; Pro 95.9 0.0073 1.6E-07 53.7 3.3 24 24-47 3-26 (169)
293 PF06309 Torsin: Torsin; Inte 95.8 0.022 4.8E-07 47.0 5.7 44 2-45 28-76 (127)
294 TIGR00763 lon ATP-dependent pr 95.8 0.011 2.5E-07 65.9 5.5 47 1-47 322-372 (775)
295 COG0470 HolB ATPase involved i 95.8 0.052 1.1E-06 54.1 9.7 47 1-47 3-49 (325)
296 COG3267 ExeA Type II secretory 95.8 0.22 4.7E-06 46.3 12.4 49 102-150 195-248 (269)
297 PRK10536 hypothetical protein; 95.8 0.025 5.4E-07 53.1 6.5 40 2-45 58-97 (262)
298 PRK06217 hypothetical protein; 95.7 0.0095 2.1E-07 53.9 3.6 24 23-46 2-25 (183)
299 cd01120 RecA-like_NTPases RecA 95.7 0.013 2.8E-07 51.6 4.5 36 24-59 1-36 (165)
300 PF00625 Guanylate_kin: Guanyl 95.7 0.0097 2.1E-07 53.8 3.7 33 22-54 2-34 (183)
301 TIGR02322 phosphon_PhnN phosph 95.7 0.0088 1.9E-07 53.9 3.4 25 23-47 2-26 (179)
302 KOG2228 Origin recognition com 95.7 0.066 1.4E-06 51.5 9.1 55 1-56 26-82 (408)
303 COG2019 AdkA Archaeal adenylat 95.7 0.011 2.4E-07 50.7 3.6 25 22-46 4-28 (189)
304 COG0542 clpA ATP-binding subun 95.7 0.014 3E-07 63.2 5.1 44 1-46 172-215 (786)
305 COG0563 Adk Adenylate kinase a 95.7 0.0099 2.1E-07 53.2 3.5 23 24-46 2-24 (178)
306 COG0529 CysC Adenylylsulfate k 95.7 0.027 5.8E-07 49.0 5.9 38 20-57 21-58 (197)
307 PRK10416 signal recognition pa 95.7 0.031 6.7E-07 55.1 7.2 29 21-49 113-141 (318)
308 PRK05342 clpX ATP-dependent pr 95.7 0.018 3.9E-07 58.7 5.6 50 1-50 73-136 (412)
309 cd02021 GntK Gluconate kinase 95.6 0.0085 1.9E-07 52.2 2.9 23 24-46 1-23 (150)
310 PRK13768 GTPase; Provisional 95.6 0.018 3.8E-07 55.0 5.2 35 23-57 3-37 (253)
311 TIGR03499 FlhF flagellar biosy 95.6 0.05 1.1E-06 52.8 8.4 27 21-47 193-219 (282)
312 COG0714 MoxR-like ATPases [Gen 95.6 0.016 3.4E-07 57.9 5.1 43 1-47 26-68 (329)
313 cd02024 NRK1 Nicotinamide ribo 95.6 0.009 2E-07 53.8 3.0 23 24-46 1-23 (187)
314 KOG0736 Peroxisome assembly fa 95.6 0.11 2.4E-06 55.4 11.2 139 3-141 405-598 (953)
315 cd00464 SK Shikimate kinase (S 95.6 0.01 2.2E-07 51.8 3.3 22 25-46 2-23 (154)
316 COG1936 Predicted nucleotide k 95.6 0.0087 1.9E-07 51.9 2.7 20 24-43 2-21 (180)
317 COG0467 RAD55 RecA-superfamily 95.6 0.024 5.2E-07 54.5 6.1 50 12-61 13-62 (260)
318 COG1419 FlhF Flagellar GTP-bin 95.6 0.024 5.1E-07 56.4 6.0 25 22-46 203-228 (407)
319 cd02023 UMPK Uridine monophosp 95.6 0.0086 1.9E-07 54.9 2.9 23 24-46 1-23 (198)
320 cd00071 GMPK Guanosine monopho 95.6 0.0091 2E-07 51.0 2.8 24 24-47 1-24 (137)
321 cd02025 PanK Pantothenate kina 95.6 0.0094 2E-07 55.5 3.1 24 24-47 1-24 (220)
322 COG1703 ArgK Putative periplas 95.6 0.028 6E-07 53.3 6.1 42 10-51 39-80 (323)
323 PF03193 DUF258: Protein of un 95.6 0.016 3.4E-07 50.5 4.2 35 6-45 24-58 (161)
324 TIGR02012 tigrfam_recA protein 95.6 0.033 7.2E-07 54.5 6.9 53 10-62 42-95 (321)
325 PRK13948 shikimate kinase; Pro 95.6 0.011 2.3E-07 53.1 3.3 27 21-47 9-35 (182)
326 PF03215 Rad17: Rad17 cell cyc 95.6 0.022 4.8E-07 59.8 6.0 51 5-57 25-78 (519)
327 COG0468 RecA RecA/RadA recombi 95.5 0.13 2.9E-06 49.2 10.7 78 20-120 58-135 (279)
328 PRK14974 cell division protein 95.5 0.032 7E-07 55.2 6.8 29 21-49 139-167 (336)
329 PRK10751 molybdopterin-guanine 95.5 0.015 3.3E-07 51.4 4.0 28 21-48 5-32 (173)
330 PRK13946 shikimate kinase; Pro 95.5 0.011 2.4E-07 53.5 3.2 24 23-46 11-34 (184)
331 TIGR00176 mobB molybdopterin-g 95.5 0.015 3.2E-07 50.8 3.9 32 24-55 1-33 (155)
332 TIGR01425 SRP54_euk signal rec 95.5 0.034 7.5E-07 56.6 7.1 29 21-49 99-127 (429)
333 PRK09435 membrane ATPase/prote 95.5 0.038 8.3E-07 54.5 7.2 51 9-59 43-94 (332)
334 KOG0739 AAA+-type ATPase [Post 95.5 0.19 4.2E-06 47.5 11.2 139 2-141 136-335 (439)
335 PRK14530 adenylate kinase; Pro 95.5 0.011 2.5E-07 54.9 3.4 23 24-46 5-27 (215)
336 PRK13975 thymidylate kinase; P 95.5 0.013 2.9E-07 53.6 3.8 26 23-48 3-28 (196)
337 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.019 4.1E-07 45.4 4.3 25 24-48 1-25 (99)
338 PRK05703 flhF flagellar biosyn 95.5 0.033 7.2E-07 57.2 6.9 26 22-47 221-246 (424)
339 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.032 7E-07 52.8 6.4 49 9-57 8-56 (237)
340 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.025 5.4E-07 54.2 5.6 38 21-58 35-72 (259)
341 PF05621 TniB: Bacterial TniB 95.5 0.27 5.8E-06 47.3 12.4 41 6-46 44-85 (302)
342 TIGR01287 nifH nitrogenase iro 95.5 0.018 3.9E-07 55.9 4.7 35 23-57 1-35 (275)
343 COG0194 Gmk Guanylate kinase [ 95.5 0.015 3.3E-07 51.2 3.7 24 23-46 5-28 (191)
344 KOG0651 26S proteasome regulat 95.5 0.041 8.8E-07 52.3 6.7 74 21-94 165-285 (388)
345 PRK05439 pantothenate kinase; 95.5 0.024 5.2E-07 55.2 5.4 29 20-48 84-112 (311)
346 KOG4252 GTP-binding protein [S 95.5 0.023 5.1E-07 48.9 4.7 69 22-90 20-105 (246)
347 PRK05537 bifunctional sulfate 95.5 0.031 6.8E-07 59.7 6.8 46 3-48 373-418 (568)
348 PRK13765 ATP-dependent proteas 95.5 0.033 7.3E-07 59.9 7.0 60 1-64 33-93 (637)
349 PRK04301 radA DNA repair and r 95.4 0.056 1.2E-06 53.6 8.2 55 21-75 101-161 (317)
350 PHA02244 ATPase-like protein 95.4 0.016 3.4E-07 57.3 4.1 24 24-47 121-144 (383)
351 TIGR03574 selen_PSTK L-seryl-t 95.4 0.018 4E-07 54.9 4.6 26 24-49 1-26 (249)
352 COG0378 HypB Ni2+-binding GTPa 95.4 0.028 6.1E-07 49.9 5.2 40 22-61 13-52 (202)
353 PF13086 AAA_11: AAA domain; P 95.4 0.041 9E-07 51.7 7.0 37 6-46 5-41 (236)
354 TIGR00602 rad24 checkpoint pro 95.4 0.019 4.1E-07 61.6 5.0 46 1-46 86-134 (637)
355 TIGR00750 lao LAO/AO transport 95.4 0.039 8.5E-07 54.2 6.9 44 10-53 22-66 (300)
356 TIGR00073 hypB hydrogenase acc 95.4 0.037 8E-07 51.1 6.3 33 18-50 18-50 (207)
357 PF13604 AAA_30: AAA domain; P 95.4 0.049 1.1E-06 49.8 7.0 41 6-49 5-45 (196)
358 cd00983 recA RecA is a bacter 95.4 0.041 8.9E-07 54.0 6.8 53 10-62 42-95 (325)
359 PRK10867 signal recognition pa 95.4 0.064 1.4E-06 55.0 8.4 41 9-49 80-127 (433)
360 PRK00771 signal recognition pa 95.4 0.041 8.8E-07 56.5 7.1 29 21-49 94-122 (437)
361 COG0703 AroK Shikimate kinase 95.4 0.014 3.1E-07 51.0 3.2 28 23-50 3-30 (172)
362 TIGR03263 guanyl_kin guanylate 95.4 0.012 2.6E-07 53.0 2.9 23 23-45 2-24 (180)
363 PF08298 AAA_PrkA: PrkA AAA do 95.4 0.026 5.5E-07 55.3 5.2 49 1-49 63-115 (358)
364 PRK12339 2-phosphoglycerate ki 95.4 0.017 3.6E-07 52.7 3.8 25 22-46 3-27 (197)
365 PRK05057 aroK shikimate kinase 95.4 0.013 2.8E-07 52.3 3.1 24 23-46 5-28 (172)
366 COG4088 Predicted nucleotide k 95.3 0.014 3.1E-07 51.9 3.1 27 23-49 2-28 (261)
367 TIGR00382 clpX endopeptidase C 95.3 0.024 5.3E-07 57.6 5.2 50 1-50 79-144 (413)
368 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.041 8.9E-07 51.8 6.5 50 9-58 7-56 (229)
369 PRK14737 gmk guanylate kinase; 95.3 0.016 3.5E-07 52.4 3.5 25 21-45 3-27 (186)
370 PRK13230 nitrogenase reductase 95.3 0.024 5.3E-07 55.1 5.0 35 23-57 2-36 (279)
371 cd02027 APSK Adenosine 5'-phos 95.3 0.023 5E-07 49.4 4.3 24 24-47 1-24 (149)
372 COG1428 Deoxynucleoside kinase 95.3 0.016 3.4E-07 52.1 3.3 26 22-47 4-29 (216)
373 cd03115 SRP The signal recogni 95.3 0.029 6.3E-07 50.1 5.1 26 24-49 2-27 (173)
374 cd02034 CooC The accessory pro 95.3 0.032 7E-07 46.0 4.9 33 25-57 2-34 (116)
375 KOG0738 AAA+-type ATPase [Post 95.3 0.093 2E-06 51.5 8.6 25 23-47 246-270 (491)
376 KOG0652 26S proteasome regulat 95.3 0.27 5.9E-06 45.5 11.1 42 3-44 175-227 (424)
377 KOG0737 AAA+-type ATPase [Post 95.2 0.19 4.2E-06 49.1 10.7 44 3-46 96-151 (386)
378 PF04665 Pox_A32: Poxvirus A32 95.2 0.026 5.7E-07 52.6 4.8 35 24-58 15-49 (241)
379 cd01124 KaiC KaiC is a circadi 95.2 0.025 5.3E-07 51.3 4.6 34 24-57 1-34 (187)
380 TIGR01313 therm_gnt_kin carboh 95.2 0.013 2.9E-07 51.8 2.7 22 25-46 1-22 (163)
381 PRK12726 flagellar biosynthesi 95.2 0.051 1.1E-06 54.0 6.9 37 21-57 205-241 (407)
382 PLN02318 phosphoribulokinase/u 95.2 0.024 5.3E-07 59.3 4.9 35 12-46 55-89 (656)
383 PRK14493 putative bifunctional 95.2 0.029 6.3E-07 53.9 5.1 35 23-58 2-36 (274)
384 PRK08181 transposase; Validate 95.2 0.045 9.7E-07 52.5 6.4 35 23-57 107-141 (269)
385 PF03029 ATP_bind_1: Conserved 95.2 0.02 4.3E-07 53.9 3.9 27 27-53 1-27 (238)
386 cd02117 NifH_like This family 95.2 0.029 6.2E-07 52.1 4.9 27 23-49 1-27 (212)
387 PRK09354 recA recombinase A; P 95.2 0.057 1.2E-06 53.4 7.1 54 10-63 47-101 (349)
388 COG0003 ArsA Predicted ATPase 95.2 0.031 6.8E-07 54.7 5.3 35 22-56 2-36 (322)
389 cd01121 Sms Sms (bacterial rad 95.2 0.042 9E-07 55.4 6.2 50 9-58 69-118 (372)
390 TIGR02236 recomb_radA DNA repa 95.1 0.086 1.9E-06 52.1 8.5 55 21-75 94-154 (310)
391 PRK03731 aroL shikimate kinase 95.1 0.018 3.9E-07 51.4 3.3 25 23-47 3-27 (171)
392 KOG0735 AAA+-type ATPase [Post 95.1 0.4 8.6E-06 51.0 13.1 139 3-141 671-870 (952)
393 PRK00300 gmk guanylate kinase; 95.1 0.019 4E-07 53.1 3.4 24 23-46 6-29 (205)
394 cd01131 PilT Pilus retraction 95.1 0.031 6.7E-07 51.2 4.8 33 23-55 2-34 (198)
395 TIGR00554 panK_bact pantothena 95.1 0.033 7.2E-07 53.8 5.2 28 20-47 60-87 (290)
396 PF13245 AAA_19: Part of AAA d 95.1 0.051 1.1E-06 40.9 5.1 23 23-45 11-33 (76)
397 PF08477 Miro: Miro-like prote 95.1 0.022 4.7E-07 47.3 3.5 22 24-45 1-22 (119)
398 PRK10865 protein disaggregatio 95.1 0.046 1E-06 61.6 7.0 48 1-48 570-624 (857)
399 PRK06835 DNA replication prote 95.1 0.043 9.4E-07 54.2 6.0 35 23-57 184-218 (329)
400 PRK08116 hypothetical protein; 95.1 0.054 1.2E-06 52.1 6.6 35 23-57 115-149 (268)
401 PRK14527 adenylate kinase; Pro 95.1 0.02 4.4E-07 52.1 3.5 25 22-46 6-30 (191)
402 PRK13695 putative NTPase; Prov 95.1 0.029 6.3E-07 50.2 4.4 33 24-56 2-35 (174)
403 PLN02200 adenylate kinase fami 95.1 0.023 5E-07 53.4 3.9 26 21-46 42-67 (234)
404 PRK06761 hypothetical protein; 95.1 0.029 6.3E-07 53.9 4.6 26 23-48 4-29 (282)
405 cd03114 ArgK-like The function 95.0 0.034 7.4E-07 48.2 4.6 26 24-49 1-26 (148)
406 PRK04182 cytidylate kinase; Pr 95.0 0.02 4.4E-07 51.5 3.3 23 24-46 2-24 (180)
407 COG0125 Tmk Thymidylate kinase 95.0 0.088 1.9E-06 48.2 7.3 35 23-57 4-38 (208)
408 PF08433 KTI12: Chromatin asso 95.0 0.032 7E-07 53.5 4.6 27 23-49 2-28 (270)
409 PRK10078 ribose 1,5-bisphospho 95.0 0.02 4.3E-07 52.0 3.1 24 23-46 3-26 (186)
410 PF07724 AAA_2: AAA domain (Cd 95.0 0.052 1.1E-06 48.3 5.7 26 22-47 3-28 (171)
411 PRK06067 flagellar accessory p 95.0 0.053 1.1E-06 51.2 6.1 50 9-58 12-61 (234)
412 PRK13236 nitrogenase reductase 95.0 0.042 9.2E-07 53.8 5.6 37 20-56 4-40 (296)
413 PTZ00088 adenylate kinase 1; P 94.9 0.022 4.7E-07 53.3 3.4 23 24-46 8-30 (229)
414 PF13306 LRR_5: Leucine rich r 94.9 0.092 2E-06 44.1 7.0 9 494-502 80-88 (129)
415 PRK09183 transposase/IS protei 94.9 0.035 7.6E-07 53.1 4.9 34 23-56 103-136 (259)
416 PF02367 UPF0079: Uncharacteri 94.9 0.031 6.6E-07 46.3 3.8 25 22-46 15-39 (123)
417 PF00560 LRR_1: Leucine Rich R 94.9 0.0095 2.1E-07 32.7 0.6 17 475-491 3-19 (22)
418 TIGR02173 cyt_kin_arch cytidyl 94.9 0.022 4.9E-07 50.7 3.3 23 24-46 2-24 (171)
419 cd02040 NifH NifH gene encodes 94.9 0.035 7.6E-07 53.7 4.9 35 23-57 2-36 (270)
420 PRK12723 flagellar biosynthesi 94.9 0.045 9.8E-07 55.2 5.8 27 21-47 173-199 (388)
421 PF01695 IstB_IS21: IstB-like 94.9 0.038 8.2E-07 49.6 4.7 37 21-57 46-82 (178)
422 cd03116 MobB Molybdenum is an 94.9 0.049 1.1E-06 47.7 5.3 27 23-49 2-28 (159)
423 cd00820 PEPCK_HprK Phosphoenol 94.9 0.025 5.4E-07 45.5 3.1 22 22-43 15-36 (107)
424 PRK06526 transposase; Provisio 94.9 0.019 4.2E-07 54.6 2.9 27 22-48 98-124 (254)
425 PRK04132 replication factor C 94.9 0.43 9.3E-06 53.0 13.5 122 27-148 569-732 (846)
426 PRK14532 adenylate kinase; Pro 94.9 0.023 4.9E-07 51.7 3.2 22 25-46 3-24 (188)
427 TIGR00764 lon_rel lon-related 94.9 0.076 1.7E-06 57.3 7.7 57 1-61 20-77 (608)
428 PRK14531 adenylate kinase; Pro 94.9 0.027 5.7E-07 51.0 3.6 23 24-46 4-26 (183)
429 PRK05973 replicative DNA helic 94.8 0.057 1.2E-06 50.5 5.8 36 22-57 64-99 (237)
430 COG1763 MobB Molybdopterin-gua 94.8 0.044 9.5E-07 47.8 4.6 37 22-58 2-38 (161)
431 CHL00206 ycf2 Ycf2; Provisiona 94.8 0.33 7.1E-06 57.6 12.7 23 22-44 1630-1652(2281)
432 cd01428 ADK Adenylate kinase ( 94.8 0.025 5.3E-07 51.7 3.3 22 25-46 2-23 (194)
433 TIGR02974 phageshock_pspF psp 94.8 0.032 7E-07 55.4 4.3 45 1-45 1-45 (329)
434 PRK12724 flagellar biosynthesi 94.8 0.11 2.4E-06 52.6 8.0 25 22-46 223-247 (432)
435 PF13504 LRR_7: Leucine rich r 94.8 0.014 3.1E-07 29.7 0.9 17 543-559 1-17 (17)
436 TIGR00101 ureG urease accessor 94.8 0.056 1.2E-06 49.5 5.5 29 23-51 2-30 (199)
437 PRK13232 nifH nitrogenase redu 94.8 0.041 8.9E-07 53.3 4.9 27 23-49 2-28 (273)
438 PRK04328 hypothetical protein; 94.8 0.065 1.4E-06 51.1 6.1 49 9-57 10-58 (249)
439 PF01078 Mg_chelatase: Magnesi 94.7 0.043 9.2E-07 49.8 4.5 40 1-44 5-44 (206)
440 TIGR02238 recomb_DMC1 meiotic 94.7 0.11 2.3E-06 51.2 7.6 67 10-76 84-156 (313)
441 cd01129 PulE-GspE PulE/GspE Th 94.7 0.084 1.8E-06 50.7 6.8 52 7-61 68-119 (264)
442 PRK11608 pspF phage shock prot 94.7 0.029 6.3E-07 55.8 3.7 45 1-45 8-52 (326)
443 PRK15453 phosphoribulokinase; 94.7 0.055 1.2E-06 51.5 5.4 27 21-47 4-30 (290)
444 TIGR00959 ffh signal recogniti 94.7 0.14 2.9E-06 52.6 8.6 26 22-47 99-124 (428)
445 cd01672 TMPK Thymidine monopho 94.7 0.052 1.1E-06 49.6 5.2 25 24-48 2-26 (200)
446 smart00072 GuKc Guanylate kina 94.7 0.026 5.7E-07 51.1 3.1 24 23-46 3-26 (184)
447 cd02032 Bchl_like This family 94.7 0.046 9.9E-07 52.8 5.0 34 24-57 2-35 (267)
448 COG1124 DppF ABC-type dipeptid 94.6 0.028 6E-07 51.7 3.1 23 23-45 34-56 (252)
449 PRK14528 adenylate kinase; Pro 94.6 0.032 6.9E-07 50.5 3.5 24 23-46 2-25 (186)
450 TIGR00416 sms DNA repair prote 94.6 0.074 1.6E-06 55.3 6.6 51 8-58 80-130 (454)
451 PF13521 AAA_28: AAA domain; P 94.6 0.03 6.4E-07 49.5 3.3 22 24-45 1-22 (163)
452 PRK08154 anaerobic benzoate ca 94.6 0.043 9.4E-07 54.1 4.7 27 20-46 131-157 (309)
453 TIGR02016 BchX chlorophyllide 94.6 0.047 1E-06 53.4 4.9 35 23-57 1-35 (296)
454 PF02374 ArsA_ATPase: Anion-tr 94.6 0.045 9.8E-07 53.7 4.7 27 23-49 2-28 (305)
455 COG3640 CooC CO dehydrogenase 94.6 0.066 1.4E-06 48.9 5.3 23 24-46 2-24 (255)
456 PRK13235 nifH nitrogenase redu 94.6 0.049 1.1E-06 52.8 4.9 35 23-57 2-36 (274)
457 PRK14722 flhF flagellar biosyn 94.6 0.048 1E-06 54.6 4.9 26 22-47 137-162 (374)
458 TIGR00041 DTMP_kinase thymidyl 94.6 0.055 1.2E-06 49.4 5.0 26 23-48 4-29 (195)
459 PRK10646 ADP-binding protein; 94.6 0.065 1.4E-06 46.2 5.0 41 6-46 12-52 (153)
460 PLN03186 DNA repair protein RA 94.5 0.11 2.3E-06 51.7 7.2 67 10-76 111-183 (342)
461 CHL00081 chlI Mg-protoporyphyr 94.5 0.049 1.1E-06 54.1 4.8 44 1-46 19-62 (350)
462 PLN02674 adenylate kinase 94.5 0.062 1.3E-06 50.5 5.2 27 20-46 29-55 (244)
463 PRK12727 flagellar biosynthesi 94.5 0.075 1.6E-06 55.2 6.2 26 22-47 350-375 (559)
464 KOG3347 Predicted nucleotide k 94.5 0.032 7E-07 46.9 2.9 24 22-45 7-30 (176)
465 PRK08533 flagellar accessory p 94.5 0.05 1.1E-06 51.1 4.5 47 10-57 12-59 (230)
466 PRK13407 bchI magnesium chelat 94.5 0.053 1.1E-06 53.7 4.8 44 1-46 10-53 (334)
467 PRK00279 adk adenylate kinase; 94.4 0.036 7.9E-07 51.5 3.6 23 24-46 2-24 (215)
468 PRK02496 adk adenylate kinase; 94.4 0.04 8.7E-07 49.8 3.7 23 24-46 3-25 (184)
469 PRK06921 hypothetical protein; 94.4 0.06 1.3E-06 51.7 5.0 37 22-58 117-154 (266)
470 PLN03187 meiotic recombination 94.4 0.15 3.2E-06 50.7 7.8 66 11-76 115-186 (344)
471 PHA02530 pseT polynucleotide k 94.4 0.037 8E-07 54.5 3.7 24 23-46 3-26 (300)
472 PRK08939 primosomal protein Dn 94.4 0.09 2E-06 51.6 6.3 36 22-57 156-191 (306)
473 PRK08356 hypothetical protein; 94.4 0.036 7.9E-07 50.6 3.3 21 23-43 6-26 (195)
474 COG1100 GTPase SAR1 and relate 94.4 0.028 6.2E-07 52.4 2.7 23 23-45 6-28 (219)
475 KOG1947 Leucine rich repeat pr 94.4 0.0054 1.2E-07 64.8 -2.5 189 351-558 212-416 (482)
476 TIGR00455 apsK adenylylsulfate 94.4 0.07 1.5E-06 48.2 5.2 27 21-47 17-43 (184)
477 TIGR01281 DPOR_bchL light-inde 94.4 0.06 1.3E-06 52.0 5.0 26 24-49 2-27 (268)
478 cd01130 VirB11-like_ATPase Typ 94.3 0.098 2.1E-06 47.4 6.1 26 23-48 26-51 (186)
479 TIGR02030 BchI-ChlI magnesium 94.3 0.064 1.4E-06 53.2 5.2 44 1-46 6-49 (337)
480 PF13306 LRR_5: Leucine rich r 94.3 0.21 4.7E-06 41.8 7.8 114 421-563 7-122 (129)
481 TIGR01351 adk adenylate kinase 94.3 0.037 7.9E-07 51.3 3.3 22 25-46 2-23 (210)
482 PF06745 KaiC: KaiC; InterPro 94.3 0.035 7.7E-07 52.1 3.2 49 10-58 7-56 (226)
483 PLN02165 adenylate isopentenyl 94.3 0.039 8.5E-07 54.0 3.5 27 21-47 42-68 (334)
484 PLN02348 phosphoribulokinase 94.3 0.061 1.3E-06 53.8 4.8 30 20-49 47-76 (395)
485 PRK11823 DNA repair protein Ra 94.2 0.098 2.1E-06 54.3 6.5 51 8-58 66-116 (446)
486 TIGR02655 circ_KaiC circadian 94.2 0.096 2.1E-06 55.2 6.5 50 8-57 249-298 (484)
487 COG0802 Predicted ATPase or ki 94.2 0.085 1.8E-06 44.9 4.9 42 5-46 8-49 (149)
488 cd02029 PRK_like Phosphoribulo 94.2 0.065 1.4E-06 50.6 4.6 26 24-49 1-26 (277)
489 cd01858 NGP_1 NGP-1. Autoanti 94.2 0.081 1.8E-06 46.4 5.1 42 3-44 82-124 (157)
490 TIGR01650 PD_CobS cobaltochela 94.2 0.079 1.7E-06 51.8 5.3 35 8-46 54-88 (327)
491 COG1484 DnaC DNA replication p 94.2 0.11 2.3E-06 49.6 6.1 36 21-56 104-139 (254)
492 PRK13185 chlL protochlorophyll 94.1 0.075 1.6E-06 51.4 5.2 35 23-57 3-37 (270)
493 PF00406 ADK: Adenylate kinase 94.1 0.041 8.9E-07 47.9 3.0 20 27-46 1-20 (151)
494 PRK01184 hypothetical protein; 94.1 0.045 9.7E-07 49.5 3.3 21 23-44 2-22 (184)
495 COG0237 CoaE Dephospho-CoA kin 94.1 0.047 1E-06 49.8 3.4 22 23-44 3-24 (201)
496 PRK14490 putative bifunctional 94.1 0.063 1.4E-06 54.4 4.7 33 22-54 5-37 (369)
497 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.11 2.5E-06 48.5 6.2 49 10-58 4-52 (224)
498 PRK09825 idnK D-gluconate kina 94.1 0.046 1E-06 48.9 3.3 25 23-47 4-28 (176)
499 PF10662 PduV-EutP: Ethanolami 94.1 0.044 9.4E-07 46.6 2.9 23 23-45 2-24 (143)
500 cd04139 RalA_RalB RalA/RalB su 94.1 0.046 9.9E-07 48.1 3.2 22 24-45 2-23 (164)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-64 Score=576.86 Aligned_cols=530 Identities=38% Similarity=0.588 Sum_probs=434.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCc--c------------cc---
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVR--E------------ES--- 63 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~--~------------~~--- 63 (567)
+|||++.++++.++|..+.++.++|+|+||||+||||||+++|+++..+|++.+|++..+ . ..
T Consensus 186 ~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~ 265 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKL 265 (1153)
T ss_pred ccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhH
Confidence 689999999999999777778999999999999999999999999999999988875310 0 00
Q ss_pred ------------------------------------------HHHHHHHHhhcCCCCCCceEEEEeCChhhhhccCcccE
Q 008394 64 ------------------------------------------QDQEESLIESLDWLTPVCRIIITTRNKQVLRNWGVRKI 101 (567)
Q Consensus 64 ------------------------------------------~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~ 101 (567)
..+|+.+.....|.++||+||||||+..++...+.+++
T Consensus 266 ~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~ 345 (1153)
T PLN03210 266 HLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHI 345 (1153)
T ss_pred HHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeE
Confidence 04566666667788899999999999999988777789
Q ss_pred EEcCCCCHHHHHHHHHHhhccCCCChH----HHHHHHHHcCCCchHHHHHHHHhccCCHHHHHHHHHHHhhcCchhHHHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQNHPDE----LSSKAVKYAQGVPLALKVLGCFLYKMEKEVWDSAINKLQRIHHPSILQI 177 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~l~~~ 177 (567)
++++.+++++||++|.++|++...+.+ ++++|+++|+|+|||++++|+.|++++.++|+.++.++....+..+..+
T Consensus 346 ~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~ 425 (1153)
T PLN03210 346 YEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKT 425 (1153)
T ss_pred EEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHH
Confidence 999999999999999999998765543 8999999999999999999999999999999999999998888899999
Q ss_pred HHHHHhcCCH-HHHHHHHhhcccCCCCChhHHHHHhhhcCCCchhhhHHHhhcCCeEEecCCcEEehHHHHHHHHHHhhh
Q 008394 178 LKISYDGLDD-KEKNIFLDVACFFQGEDVNPVMKFLNASGFYPEIGISVLVDKSLIVISNNNKITMHDWLQELGRDIVSQ 256 (567)
Q Consensus 178 l~~s~~~L~~-~~k~~~~~~~~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~~lv~~~~~~~~~~H~~v~~~~~~~~~~ 256 (567)
++.||++|++ ..|.||+++|+|+.+.+++.+..++...++....+++.|++++|++.. .+.+.|||++|+++++++.+
T Consensus 426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred HHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHh
Confidence 9999999976 589999999999999999887777777777788889999999999886 57899999999999999999
Q ss_pred hcCCCCCcccccChhhhHHHhhcccccceEEEEEeecCccccc--ChhhhhcccccccCCCeeEEEEeeCCC--CCcccc
Q 008394 257 ESIDPGNRSRLWHHEDIYKVLTYNTVSNLLWVITLEYSSIYKL--DMDIFINSRIDESRINSRVTMIRKNNS--GYKCRD 332 (567)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~l~~~~~--~~~~~~ 332 (567)
+..+|+++.++|..+++..++...++++.++.+.++...+.++ ...+|.+ | .+|+.|.+..+.. ......
T Consensus 505 ~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~--m----~~L~~L~~~~~~~~~~~~~~~ 578 (1153)
T PLN03210 505 QSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG--M----RNLLFLKFYTKKWDQKKEVRW 578 (1153)
T ss_pred hcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc--C----ccccEEEEeccccccccccee
Confidence 9889999999999999999999999999999999998888755 4889999 9 9999999976532 223345
Q ss_pred ccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccc
Q 008394 333 NLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKML 412 (567)
Q Consensus 333 ~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~ 412 (567)
++|. ++..+| .+||.|++.++++..+|..+.+++|+.|++++|.+..+|.++. .+++|+.|++++|..+
T Consensus 579 ~lp~------~~~~lp----~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~-~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 579 HLPE------GFDYLP----PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH-SLTGLRNIDLRGSKNL 647 (1153)
T ss_pred ecCc------chhhcC----cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc-cCCCCCEEECCCCCCc
Confidence 5777 777887 7899999999999999999989999999999999999999887 8999999999988755
Q ss_pred cccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc---------------------
Q 008394 413 IAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--------------------- 471 (567)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--------------------- 471 (567)
. ..+ .+..+++|++|++++|.....+|..+..+++|+.|++++|+.+..+|....
T Consensus 648 ~-~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 648 K-EIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred C-cCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc
Confidence 4 333 356678888888888877777887777788888888877766666654321
Q ss_pred -CCCceeeccCccCcccChhhh------------------------------ccCCCcEEecCCCccCccCcccccCCCC
Q 008394 472 -SNTSCLFLSGTAIEELPSSIE------------------------------LLLRLEYLDLSDCKRLKSLPSSLCKLKS 520 (567)
Q Consensus 472 -~~L~~L~l~~~~i~~lp~~~~------------------------------~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 520 (567)
.+|++|++++|.++.+|..+. ..++|+.|++++|+....+|..++++++
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 145555565665555554320 1235666666666666667777777777
Q ss_pred CcEEeccCCCCCcccCcccCCCCCcceeccccc
Q 008394 521 LEILDLSGCSNLQRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 521 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 553 (567)
|+.|++++|..++.+|..+ .+++|+.|++++|
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 7777777776666666543 4444555555443
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-56 Score=479.38 Aligned_cols=255 Identities=31% Similarity=0.464 Sum_probs=220.2
Q ss_pred CCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH---HhccCCceEEEEcCccccH--------------
Q 008394 2 VGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK---ISSDFEGSCFLENVREESQ-------------- 64 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~-------------- 64 (567)
||.+..++++.+.|.++++ ++++|+||||+||||||++++++ ++.+|+.++|+...+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 7999999999999976544 89999999999999999999985 6799999999987766554
Q ss_pred -----------------------------------HHHHHHHhhcCCCCCCceEEEEeCChhhhhc-cCcccEEEcCCCC
Q 008394 65 -----------------------------------DQEESLIESLDWLTPVCRIIITTRNKQVLRN-WGVRKIYEMEALE 108 (567)
Q Consensus 65 -----------------------------------~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~-~~~~~~~~l~~L~ 108 (567)
..|+.+..+++...+||||++|||+++||.. +++...++++.|+
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred CcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 2233444444445678999999999999999 7878899999999
Q ss_pred HHHHHHHHHHhhccCCC-----ChHHHHHHHHHcCCCchHHHHHHHHhccC-CHHHHHHHHHHHhhc-------CchhHH
Q 008394 109 YHHALELFSRHAFKQNH-----PDELSSKAVKYAQGVPLALKVLGCFLYKM-EKEVWDSAINKLQRI-------HHPSIL 175 (567)
Q Consensus 109 ~~~~~~l~~~~~~~~~~-----~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~-------~~~~l~ 175 (567)
.+|||++|.+.|+.... .+++|++++++|+|+|||+.++|+.|+.+ ++.+|+++.+.+... ..+.+.
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 99999999999987622 24499999999999999999999999987 888999999987654 246789
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcccCCCCCh--hHHHHHhhhcCCCch------------hhhHHHhhcCCeEEec----C
Q 008394 176 QILKISYDGLDDKEKNIFLDVACFFQGEDV--NPVMKFLNASGFYPE------------IGISVLVDKSLIVISN----N 237 (567)
Q Consensus 176 ~~l~~s~~~L~~~~k~~~~~~~~fp~~~~~--~~l~~~w~~~~~~~~------------~~l~~L~~~~lv~~~~----~ 237 (567)
.++..||+.||++.|.||+|||+||+++.| +.++..|+|||++.. .++.+|++++|+.... .
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 999999999999999999999999999976 689999999998743 3399999999999865 2
Q ss_pred CcEEehHHHHHHHHHHhhhhc
Q 008394 238 NKITMHDWLQELGRDIVSQES 258 (567)
Q Consensus 238 ~~~~~H~~v~~~~~~~~~~~~ 258 (567)
.+|.|||+|||+|.++++..+
T Consensus 479 ~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred eEEEeeHHHHHHHHHHhcccc
Confidence 689999999999999999664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-34 Score=284.88 Aligned_cols=218 Identities=30% Similarity=0.518 Sum_probs=171.7
Q ss_pred chHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH--HhccCCceEEEEcCccccH-----------------
Q 008394 4 VESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK--ISSDFEGSCFLENVREESQ----------------- 64 (567)
Q Consensus 4 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~----------------- 64 (567)
||.++++|.+.|...+++.++|+|+||||+||||||.+++++ ++.+|+.++|++.......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999876688999999999999999999999998 8999999999873322111
Q ss_pred ---------------------------------HHHHHHHhhcCCCCCCceEEEEeCChhhhhccCc-ccEEEcCCCCHH
Q 008394 65 ---------------------------------DQEESLIESLDWLTPVCRIIITTRNKQVLRNWGV-RKIYEMEALEYH 110 (567)
Q Consensus 65 ---------------------------------~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~~~-~~~~~l~~L~~~ 110 (567)
..|+.+...++..+.|++||||||+..++..+.. ...+++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333444444444678999999999999887654 568999999999
Q ss_pred HHHHHHHHhhccCC-----CChHHHHHHHHHcCCCchHHHHHHHHhccC-CHHHHHHHHHHHhhcC------chhHHHHH
Q 008394 111 HALELFSRHAFKQN-----HPDELSSKAVKYAQGVPLALKVLGCFLYKM-EKEVWDSAINKLQRIH------HPSILQIL 178 (567)
Q Consensus 111 ~~~~l~~~~~~~~~-----~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~------~~~l~~~l 178 (567)
+|++||.+.++... ..++.+++|+++|+|+||||+.+|++|+.+ +..+|+.+++++.... ...+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997655 122389999999999999999999999654 7788999988766433 47799999
Q ss_pred HHHHhcCCHHHHHHHHhhcccCCCCC--hhHHHHHhhhcCCCchh
Q 008394 179 KISYDGLDDKEKNIFLDVACFFQGED--VNPVMKFLNASGFYPEI 221 (567)
Q Consensus 179 ~~s~~~L~~~~k~~~~~~~~fp~~~~--~~~l~~~w~~~~~~~~~ 221 (567)
..||+.||++.|.||.|||+||+++. .+.++++|+++|++...
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999976 47899999999988653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3e-21 Score=221.05 Aligned_cols=263 Identities=19% Similarity=0.208 Sum_probs=156.4
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccC--------ccccCCCCCCCe
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCK--------VSYLEDPRFTEV 355 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~--------l~~~~~~~~~~L 355 (567)
..+..+.+..+.+....+..|.. + ++|++|++++|.....-+..+...+.++.. ...+|...+++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~--l----~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFR--L----PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL 142 (968)
T ss_pred CcEEEEEecCCCccccCChHHhC--C----CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCC
Confidence 45777777777776666667777 7 888888888875432111111000000000 011222334556
Q ss_pred eEEeeCCCCCC-CCCCCC-CCCCceEEEccCCcccc-cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 356 KYLHWHGYPLK-SMPSNI-CAEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 356 ~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
++|++++|.+. .+|..+ .+++|++|++++|.+.. +|..+. ++++|++|++++|.... ..|..+..+++|++|+
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVG---QIPRELGQMKSLKWIY 218 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcC---cCChHHcCcCCccEEE
Confidence 66666665554 334333 25566666666665543 333333 56666666666665321 1234455666666666
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCc-ccChhhhccCCCcEEecCCCccCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIE-ELPSSIELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~ 509 (567)
+++|.+.+.+|..+..+++|++|++++|...+.+|..... +|++|++++|.+. .+|..+..+++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 6666655566666666666666666666655555544432 6677777776665 456666677777777777776666
Q ss_pred cCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccc
Q 008394 510 SLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 510 ~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
.+|..+.++++|+.|++++|...+.+|..+..+++|+.|++++|.+.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 67766777777777777777776677777777777777777777765
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.1e-22 Score=197.34 Aligned_cols=258 Identities=19% Similarity=0.143 Sum_probs=161.4
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
.-++++.+..+.+.++..+.+.- + +.+|+|+++.|-+.+.....+|. =.++++|++++|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~--l----~alrslDLSrN~is~i~~~sfp~---------------~~ni~~L~La~N 183 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSA--L----PALRSLDLSRNLISEIPKPSFPA---------------KVNIKKLNLASN 183 (873)
T ss_pred cceeEEeeeccccccccHHHHHh--H----hhhhhhhhhhchhhcccCCCCCC---------------CCCceEEeeccc
Confidence 34899999999999999887777 6 88999999998544433333333 247999999999
Q ss_pred CCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCC---------------------CCC
Q 008394 364 PLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTP---------------------NPT 420 (567)
Q Consensus 364 ~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~---------------------~~~ 420 (567)
.++.+.... .+.+|.+|.+++|+|+.+|...|+++++|+.|+|..|+....+.. .-.
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 999887654 377899999999999999999997799999999988875321000 011
Q ss_pred CCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc-c-CCCceeeccCccCcccCh-hhhccCCC
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS-S-SNTSCLFLSGTAIEELPS-SIELLLRL 497 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~-~-~~L~~L~l~~~~i~~lp~-~~~~l~~L 497 (567)
.|..|.++++|+|+.|+....--.++..+.+|+.|+||+|....-.++.. + .+|++|+|++|.|+.+++ .+..+..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 23345556666666665333333456667777777777765443333222 2 267777777777776654 35555555
Q ss_pred cEEecCCCccCccCccc---------------------------ccCCCCCcEEeccCCCCCcccC-cccCCCCCcceec
Q 008394 498 EYLDLSDCKRLKSLPSS---------------------------LCKLKSLEILDLSGCSNLQRLP-ECLGQLSSLGTLL 549 (567)
Q Consensus 498 ~~L~l~~~~~~~~~p~~---------------------------~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~ 549 (567)
+.|+++.|.+...-... |..|++|+.|++.+|++. ++| ..|.+++.|+.|+
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceec
Confidence 55555555432222222 344555555555554332 222 3355555555555
Q ss_pred cccccccccchhhh
Q 008394 550 LEKPILREYQKASS 563 (567)
Q Consensus 550 l~~~~l~~~p~~~~ 563 (567)
|.+|.|.++.+..|
T Consensus 423 L~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 423 LGDNAIASIQPNAF 436 (873)
T ss_pred CCCCcceeeccccc
Confidence 55555555544433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=6.3e-21 Score=218.44 Aligned_cols=268 Identities=21% Similarity=0.202 Sum_probs=209.7
Q ss_pred ceEEEEEeecCccc-ccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccc----cCc-cccC--CCCCCCe
Q 008394 284 NLLWVITLEYSSIY-KLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENK----CKV-SYLE--DPRFTEV 355 (567)
Q Consensus 284 ~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~----~~l-~~~~--~~~~~~L 355 (567)
..++.+.++.+.+. .++...|.+ + .+|++|++++|......+......|..+ +.+ ..+| ...+++|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~--l----~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTT--S----SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhcc--C----CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 34566777777665 455666655 5 7777777777654322111111111000 011 1222 3456799
Q ss_pred eEEeeCCCCCC-CCCCCC-CCCCceEEEccCCcccc-cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 356 KYLHWHGYPLK-SMPSNI-CAEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 356 ~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
++|++++|.+. .+|..+ .+++|++|++++|.+.. +|..+. ++++|++|++++|.... ..+..+..+++|++|+
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSG---EIPYEIGGLTSLNHLD 242 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCC---cCChhHhcCCCCCEEE
Confidence 99999999876 566655 48999999999999875 565555 89999999999997542 3455788999999999
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCc-ccChhhhccCCCcEEecCCCccCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIE-ELPSSIELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~ 509 (567)
+++|.+.+.+|..+..+++|++|++++|...+..|.... .+|++|++++|.+. .+|..+.++++|++|++++|.+.+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 999998889999999999999999999988777776554 39999999999988 678889999999999999999999
Q ss_pred cCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccc-cchh
Q 008394 510 SLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILRE-YQKA 561 (567)
Q Consensus 510 ~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~p~~ 561 (567)
.+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.. +|+.
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 999999999999999999999999999999999999999999999864 4543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=9.9e-23 Score=202.06 Aligned_cols=263 Identities=21% Similarity=0.274 Sum_probs=193.1
Q ss_pred hHHHhhcccccceEEEEEeecCccc--ccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCC
Q 008394 273 IYKVLTYNTVSNLLWVITLEYSSIY--KLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDP 350 (567)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 350 (567)
...+.+.-+....++.+.+..+.+. .+++++|.- ..|..|++++|.. ...|. ++.+-
T Consensus 67 L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l-------~dLt~lDLShNqL-----~EvP~------~LE~A--- 125 (1255)
T KOG0444|consen 67 LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL-------KDLTILDLSHNQL-----REVPT------NLEYA--- 125 (1255)
T ss_pred hHhhhhhhccchhhHHHhhhccccccCCCCchhccc-------ccceeeecchhhh-----hhcch------hhhhh---
Confidence 4444444444455555555555553 556777775 8888999988742 12333 33333
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCC--CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccc--------------
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNIC--AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIA-------------- 414 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~-------------- 414 (567)
+++-+|+++.|++.++|...+ +..|-.||+++|++..+|+.+. .+.+|++|.|++|+....
T Consensus 126 --Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 126 --KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred --cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 477889999999999988664 7888899999999999999888 888888888888864220
Q ss_pred --------cCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccC
Q 008394 415 --------KTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAI 484 (567)
Q Consensus 415 --------~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i 484 (567)
....|.++..+.+|..+|++.|+ +..+|+.+.++++|+.|+||+|. +..+..... .+|++|++|+|++
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchh
Confidence 01122333455566666666655 56666667777777777777753 333332222 2899999999999
Q ss_pred cccChhhhccCCCcEEecCCCccC-ccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 485 EELPSSIELLLRLEYLDLSDCKRL-KSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 485 ~~lp~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
+.+|..+.++++|+.|.+.+|++. ..+|.+++++.+|+.+...+ +.+..+|++++.|+.|++|.|+.|++-.+|+++
T Consensus 281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhh
Confidence 999999999999999999998865 56999999999999999888 456789999999999999999999999999875
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=7e-22 Score=194.80 Aligned_cols=239 Identities=21% Similarity=0.191 Sum_probs=162.5
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccC---CCCCCCeeEEee
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLE---DPRFTEVKYLHW 360 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~---~~~~~~L~~L~l 360 (567)
..++++.+..+.+..+....|.. + .+|-+|.+++|. +..+| +.++++|+.|++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~--l----nsL~tlkLsrNr------------------ittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDS--L----NSLLTLKLSRNR------------------ITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred CCceEEeeccccccccccccccc--c----chheeeecccCc------------------ccccCHHHhhhcchhhhhhc
Confidence 46777888888888888888877 7 777888887774 23333 334557777788
Q ss_pred CCCCCCCCCC--CCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCcc
Q 008394 361 HGYPLKSMPS--NICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKS 438 (567)
Q Consensus 361 ~~~~~~~l~~--~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 438 (567)
..|.+.-+.. ..++++|+.|.+..|+|..+.++.|-.|.++++|+|+.|+... .....+-+++.|++|++++|.+
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~---vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA---VNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh---hhcccccccchhhhhccchhhh
Confidence 7777665533 2247777777888888888777777777888888887776532 1233455677777777777775
Q ss_pred CCccCCcccCCCCCcEEEcCCCCCCCcCCccccC---------------------------CCceeeccCccCc----cc
Q 008394 439 LKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS---------------------------NTSCLFLSGTAIE----EL 487 (567)
Q Consensus 439 ~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~---------------------------~L~~L~l~~~~i~----~l 487 (567)
...-+++....++|..|+|++|+. ..++..... +|+.|+|++|.+. .-
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred heeecchhhhcccceeEecccccc-ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 555556666677777777777543 223222221 5555555555544 11
Q ss_pred ChhhhccCCCcEEecCCCccCccCc-ccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccc
Q 008394 488 PSSIELLLRLEYLDLSDCKRLKSLP-SSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEK 552 (567)
Q Consensus 488 p~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 552 (567)
...+.+|++|+.|.+.+|+ ++.+| .+|..+.+|++|++.+|.+...-|..|..+ +|+.|.+..
T Consensus 385 a~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 1235556677777777766 34444 468999999999999999988889999998 899998865
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=4.1e-20 Score=183.68 Aligned_cols=206 Identities=20% Similarity=0.242 Sum_probs=124.0
Q ss_pred CCCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 352 FTEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
+..|..|+++.|+++..|.... .+++-+|++++|+|..+|..++-++.-|-.|+||+|+.-. .|+.+..+.+|++
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~----LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM----LPPQIRRLSMLQT 177 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh----cCHHHHHHhhhhh
Confidence 3456666666666666665543 5566666666666666666665566666666666665321 2344555666666
Q ss_pred EecCCCccCCccCCcccCCCCCcEEEcCCCCC-CCcCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCcc
Q 008394 431 LNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPK-LKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKR 507 (567)
Q Consensus 431 L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~-~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 507 (567)
|+|++|.+...--..+-+|.+|++|.+|+.+. +..+|...-. +|..+++|.|++..+|..+-++.+|+.|++++|++
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 66666553221112233455555666655432 2344444332 77777777777777777777777777777777763
Q ss_pred CccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccc--cccchhhh
Q 008394 508 LKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPIL--REYQKASS 563 (567)
Q Consensus 508 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l--~~~p~~~~ 563 (567)
..+....+...+|++|+++.|++. .+|..+..++.|+.|.+.+|.+ ..+|..+.
T Consensus 258 -teL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 258 -TELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred -eeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 344445666677777777775543 6777777777788877777754 55665554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=8.5e-19 Score=166.01 Aligned_cols=88 Identities=30% Similarity=0.434 Sum_probs=68.9
Q ss_pred CCceeeccCccCcccChhhhccCCCcEEecCCCcc----------------------CccCc-ccccCCCCCcEEeccCC
Q 008394 473 NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKR----------------------LKSLP-SSLCKLKSLEILDLSGC 529 (567)
Q Consensus 473 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~----------------------~~~~p-~~~~~l~~L~~L~l~~~ 529 (567)
+|..|++++|-+..+|..++.+..|+.|+++.|++ .+.++ .++++|.+|.+|++.+|
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 56778888888888888888888888888887763 22233 34888899999999886
Q ss_pred CCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 530 SNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 530 ~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
.+ ..+|..+++|++|+.|.+.+|.++ .|+..
T Consensus 516 dl-q~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 516 DL-QQIPPILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred ch-hhCChhhccccceeEEEecCCccC-CCHHH
Confidence 54 578888999999999999999998 66654
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=4.6e-18 Score=142.89 Aligned_cols=167 Identities=25% Similarity=0.305 Sum_probs=126.4
Q ss_pred CCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcc
Q 008394 367 SMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGI 446 (567)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l 446 (567)
.+|..+.+.++..|-+++|++..+|+.+. .+.+|+.|++++|+.-. .|.++..+++|+.|++.-|. +..+|..|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnqie~----lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccchhhh----cChhhhhchhhhheecchhh-hhcCcccc
Confidence 34555556677777777777777777777 77788888887776432 35567788888888887776 77788888
Q ss_pred cCCCCCcEEEcCCCCCCC-cCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcE
Q 008394 447 FNLEFLTTLDLSGCPKLK-RLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEI 523 (567)
Q Consensus 447 ~~l~~L~~L~Ls~~~~~~-~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 523 (567)
+++|-|+.|||++|+... .+|..++. .|+-|+++.|.++.+|..++++++|+.|.+..|.+ -++|..++.++.|++
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lre 177 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRE 177 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHH
Confidence 888888888888877554 45655543 77788888889989999999999999999988774 468888999999999
Q ss_pred EeccCCCCCcccCcccCC
Q 008394 524 LDLSGCSNLQRLPECLGQ 541 (567)
Q Consensus 524 L~l~~~~~~~~~p~~l~~ 541 (567)
|.+.+|.+ ..+|..+++
T Consensus 178 lhiqgnrl-~vlppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRL-TVLPPELAN 194 (264)
T ss_pred Hhccccee-eecChhhhh
Confidence 99988654 456665554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=2.3e-18 Score=163.18 Aligned_cols=247 Identities=29% Similarity=0.301 Sum_probs=203.6
Q ss_pred ccceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccC--CCCCCCeeEEe
Q 008394 282 VSNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLE--DPRFTEVKYLH 359 (567)
Q Consensus 282 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~--~~~~~~L~~L~ 359 (567)
....+-.+.++.++..++.+.+-+- .++..+.++.| +++.+| .....+++.++
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l-------~~l~~l~vs~n------------------~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGEL-------EALKSLNVSHN------------------KLSELPEQIGSLISLVKLD 120 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHH-------HHHHHhhcccc------------------hHhhccHHHhhhhhhhhhh
Confidence 3445666778888887777665554 66777777766 333333 23345899999
Q ss_pred eCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCcc
Q 008394 360 WHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKS 438 (567)
Q Consensus 360 l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 438 (567)
++.|.+..+|..++ +-.|..++..+|++..+|.+++ .+.+|..+++.+|.... .+...-.|+.|+.||...|-
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l~~l~~~~n~l~~----l~~~~i~m~~L~~ld~~~N~- 194 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKLSKLDLEGNKLKA----LPENHIAMKRLKHLDCNSNL- 194 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCchHHH-HHHHHHHhhccccchhh----CCHHHHHHHHHHhcccchhh-
Confidence 99999999988775 7889999999999999999999 99999999999997543 22333459999999998776
Q ss_pred CCccCCcccCCCCCcEEEcCCCCCCCcCCccccC-CCceeeccCccCcccChhhh-ccCCCcEEecCCCccCccCccccc
Q 008394 439 LKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS-NTSCLFLSGTAIEELPSSIE-LLLRLEYLDLSDCKRLKSLPSSLC 516 (567)
Q Consensus 439 ~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~-~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~~~ 516 (567)
.+.+|+.++.|.+|..|++..| .+..+|.+.++ .|++|+++.|.|+.+|..+. .+.+|.+||+..|+ +++.|.++.
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c 272 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC 272 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHH
Confidence 8999999999999999999994 56778866665 89999999999999998765 89999999999988 778999999
Q ss_pred CCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 517 KLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 517 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
.+.+|+.||+++|.+. .+|..++++ .|+.|.+.+|.++.+.....
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999999999997654 688889999 99999999999987766554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=8.2e-16 Score=165.75 Aligned_cols=226 Identities=20% Similarity=0.253 Sum_probs=127.5
Q ss_pred EEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCC
Q 008394 287 WVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLK 366 (567)
Q Consensus 287 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 366 (567)
..+.++...+..++.... ++++.|++.+|. +..+|...+.+|+.|++++|.++
T Consensus 181 ~~L~L~~~~LtsLP~~Ip---------~~L~~L~Ls~N~------------------LtsLP~~l~~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 181 TELRLKILGLTTIPACIP---------EQITTLILDNNE------------------LKSLPENLQGNIKTLYANSNQLT 233 (754)
T ss_pred eEEEeCCCCcCcCCcccc---------cCCcEEEecCCC------------------CCcCChhhccCCCEEECCCCccc
Confidence 345555555555443221 346777776663 22333222346777777777777
Q ss_pred CCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcc
Q 008394 367 SMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGI 446 (567)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l 446 (567)
.+|..+ .++|+.|++++|.+..+|..+. .+|+.|++++|+.. .. |..+ .++|++|++++|+ +..+|..+
T Consensus 234 sLP~~l-~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~--~L--P~~l--~~sL~~L~Ls~N~-Lt~LP~~l 302 (754)
T PRK15370 234 SIPATL-PDTIQEMELSINRITELPERLP---SALQSLDLFHNKIS--CL--PENL--PEELRYLSVYDNS-IRTLPAHL 302 (754)
T ss_pred cCChhh-hccccEEECcCCccCcCChhHh---CCCCEEECcCCccC--cc--cccc--CCCCcEEECCCCc-cccCcccc
Confidence 766543 3467777777777777665543 36777777766532 11 1122 2467777777766 44455433
Q ss_pred cCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEec
Q 008394 447 FNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDL 526 (567)
Q Consensus 447 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 526 (567)
. .+|+.|++++|... .+|.....+|++|++++|.++.+|..+. ++|+.|++++|++. .+|..+ .++|+.|++
T Consensus 303 p--~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 303 P--SGITHLNVQSNSLT-ALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDV 374 (754)
T ss_pred h--hhHHHHHhcCCccc-cCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence 2 35666666665433 3554444566667776666666665443 56667777666533 455443 246666676
Q ss_pred cCCCCCcccCcccCCCCCcceeccccccccccchh
Q 008394 527 SGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 527 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
++|.+. .+|..+. ++|+.|++++|.+..+|+.
T Consensus 375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 375 SRNALT-NLPENLP--AALQIMQASRNNLVRLPES 406 (754)
T ss_pred CCCcCC-CCCHhHH--HHHHHHhhccCCcccCchh
Confidence 666544 4554432 2466666666666666654
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=7.5e-15 Score=169.03 Aligned_cols=232 Identities=31% Similarity=0.459 Sum_probs=133.6
Q ss_pred cceEEEEEeecCc-ccccChhhhhcccccccCCCeeEEEEeeCCCCCcccccccccccccc-----------CccccCC-
Q 008394 283 SNLLWVITLEYSS-IYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKC-----------KVSYLED- 349 (567)
Q Consensus 283 ~~~~~~l~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~-----------~l~~~~~- 349 (567)
...++.+.++.+. +..++ .+.. + ++|+.|++.+|... ..+|.++.++. .+..+|.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip--~ls~--l----~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP--DLSM--A----TNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC--cccc--C----CcccEEEecCCCCc----cccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 3445666666543 22332 2444 5 77888888765421 12333222221 2333332
Q ss_pred CCCCCeeEEeeCCCC-CCCCCCCCCCCCceEEEccCCcccccchhhh-----------------------------hhcc
Q 008394 350 PRFTEVKYLHWHGYP-LKSMPSNICAEQLVFLEVPNSSIEQLWDGMK-----------------------------QHRG 399 (567)
Q Consensus 350 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~-----------------------------~~l~ 399 (567)
..+++|+.|++++|. +..+|.. ..+|++|++++|.+..+|..+. ...+
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccc
Confidence 245566777777663 3344432 3567777777777776665431 0123
Q ss_pred CCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeec
Q 008394 400 KLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFL 479 (567)
Q Consensus 400 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l 479 (567)
+|+.|++++|.... . .|..+..+++|+.|++++|..++.+|..+ .+++|+.|++++|+.+..+|.. ..++++|++
T Consensus 779 sL~~L~Ls~n~~l~-~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-~~nL~~L~L 853 (1153)
T PLN03210 779 SLTRLFLSDIPSLV-E--LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-STNISDLNL 853 (1153)
T ss_pred cchheeCCCCCCcc-c--cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-ccccCEeEC
Confidence 45555555554332 2 23345666667777776666566666544 5666777777766666555543 246777777
Q ss_pred cCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCc
Q 008394 480 SGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 480 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
++|.++.+|.++..+++|++|++.+|+.+..+|..+..+++|+.+++++|..+.
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 777777777777777777777777776666676666677777777777776554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=4.1e-15 Score=160.43 Aligned_cols=189 Identities=22% Similarity=0.305 Sum_probs=153.1
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
++|+.|++++|.++.+|.... ++|++|++++|+++.+|..+. .+|+.|++++|... .. |..+ ..+|+.|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~--~L--P~~l--~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRIT--EL--PERL--PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccC--cC--ChhH--hCCCCEEE
Confidence 589999999999999997654 689999999999999987654 47999999999753 22 2222 25899999
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p 512 (567)
+++|+ +..+|..+. ++|++|++++|+ +..+|.....+|+.|++++|.++.+|..+. ++|++|++++|.+. .+|
T Consensus 269 Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt-~LP 341 (754)
T PRK15370 269 LFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT-SLP 341 (754)
T ss_pred CcCCc-cCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCccc-cCC
Confidence 99887 557887654 589999999975 456776666789999999999999887553 78999999999855 477
Q ss_pred ccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 513 SSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 513 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.++++|+...
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred hhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH
Confidence 6553 79999999998765 577655 3689999999999999998653
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=4.9e-15 Score=158.82 Aligned_cols=120 Identities=32% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCc
Q 008394 427 KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCK 506 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 506 (567)
+|++|++++|. +..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|+
T Consensus 343 ~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l-~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 343 GLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR-LTSLPAL-PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred ccceEecCCCc-cCCCCCC---Ccccceehhhccc-cccCccc-ccccceEEecCCcccCCCCc---ccCCCEEEccCCc
Confidence 56666666665 3445542 2345556666543 3334432 23677777777777776643 3567777887776
Q ss_pred cCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccch
Q 008394 507 RLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 507 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
+. .+|.. +.+|+.|++++|++. .+|..+..+++|+.|++++|.++....
T Consensus 414 Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 414 LT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 43 46653 346777888886654 678888888888888888888875433
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-17 Score=139.46 Aligned_cols=178 Identities=23% Similarity=0.303 Sum_probs=146.2
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
.+.++..|.++.|.++.+|..+. +.+|++|++.+|+++++|..+. .+++|+.|+++-|+.. ..|..|+.+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnrl~----~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNRLN----ILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhhhh----cCccccCCCchhh
Confidence 34588899999999999988774 9999999999999999999999 9999999999988743 3577899999999
Q ss_pred EEecCCCccC-CccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCc
Q 008394 430 ILNLRGSKSL-KSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCK 506 (567)
Q Consensus 430 ~L~l~~~~~~-~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 506 (567)
+||+++|++. ..+|..|+.|..|+.|.|+.|. ...+|...+. +|+.|.+..|.+-++|..++.++.|+.|.+.+|+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 9999999855 4688889999999999999965 4455555543 9999999999999999999999999999999988
Q ss_pred cCccCcccccCCCC---CcEEeccCCCCCccc
Q 008394 507 RLKSLPSSLCKLKS---LEILDLSGCSNLQRL 535 (567)
Q Consensus 507 ~~~~~p~~~~~l~~---L~~L~l~~~~~~~~~ 535 (567)
+..+|+.++++.- =+.+.+.+|+....+
T Consensus 185 -l~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 185 -LTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred -eeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 5567776776542 233444455554433
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=5e-14 Score=151.17 Aligned_cols=186 Identities=23% Similarity=0.205 Sum_probs=109.5
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhh----------------hhccCCcEEecccCccccccC
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMK----------------QHRGKLNQIIHATCKMLIAKT 416 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~----------------~~l~~L~~L~l~~~~~~~~~~ 416 (567)
++|++|++++|.++.+|.. .++|+.|++++|.+..++.... ...++|++|++++|.... .
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~--L 317 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS--L 317 (788)
T ss_pred CCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCcccc--C
Confidence 4666666666666666532 3455555555555554443110 012345555555543221 1
Q ss_pred CCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCC
Q 008394 417 PNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLR 496 (567)
Q Consensus 417 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~ 496 (567)
+. ....|+.|++++|. +..+|. ...+|++|+|++|. +..+|.. ..+|+.|++++|.++.+|.. ..+
T Consensus 318 p~-----lp~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~-Ls~LP~l-p~~L~~L~Ls~N~L~~LP~l---~~~ 383 (788)
T PRK15387 318 PA-----LPSELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQ-LASLPTL-PSELYKLWAYNNRLTSLPAL---PSG 383 (788)
T ss_pred CC-----CcccccccccccCc-cccccc---cccccceEecCCCc-cCCCCCC-CcccceehhhccccccCccc---ccc
Confidence 10 11234445555444 333442 12467788887754 3345542 34777888888888777753 357
Q ss_pred CcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhhh
Q 008394 497 LEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASSK 564 (567)
Q Consensus 497 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~~ 564 (567)
|+.|++++|++. .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.|+.+|+.+.+
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~ 443 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIH 443 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhh
Confidence 888999888754 46653 367889999998765 46653 34688899999999999986543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=7.8e-16 Score=160.42 Aligned_cols=243 Identities=24% Similarity=0.221 Sum_probs=171.9
Q ss_pred ccceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeC
Q 008394 282 VSNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWH 361 (567)
Q Consensus 282 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~ 361 (567)
.+..+..+.++.+....+. +.... . .++..+...+|.. ..+|. .+. +..+|++|.+.
T Consensus 239 ~p~nl~~~dis~n~l~~lp-~wi~~--~----~nle~l~~n~N~l-----~~lp~------ri~-----~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLP-EWIGA--C----ANLEALNANHNRL-----VALPL------RIS-----RITSLVSLSAA 295 (1081)
T ss_pred ccccceeeecchhhhhcch-HHHHh--c----ccceEecccchhH-----HhhHH------HHh-----hhhhHHHHHhh
Confidence 3444555556665555555 44433 3 6666666655532 11222 222 33477888888
Q ss_pred CCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccC-CcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccC
Q 008394 362 GYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGK-LNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSL 439 (567)
Q Consensus 362 ~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 439 (567)
.|.+..+|.... .+.|++|++..|++..+|+..+.-... |+.|+.+.++.-. .+ -..-..++.|+.|.+.+|.+.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~--lp-~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST--LP-SYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc--cc-cccchhhHHHHHHHHhcCccc
Confidence 888888887765 788899999999888888876644443 6777777665422 11 112234678999999999877
Q ss_pred CccCCcccCCCCCcEEEcCCCCCCCcCCccccC---CCceeeccCccCcccChhhhccCCCcEEecCCCccCccCccccc
Q 008394 440 KSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS---NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLC 516 (567)
Q Consensus 440 ~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 516 (567)
...-+.+..+++|+.|+|++|. +..+|..... .|++|+||||.++.+|..+..+..|++|...+|. +..+| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhh
Confidence 6665668899999999999954 5566665543 7899999999999999999999999999988876 55788 689
Q ss_pred CCCCCcEEeccCCCCCcc-cCcccCCCCCcceecccccc
Q 008394 517 KLKSLEILDLSGCSNLQR-LPECLGQLSSLGTLLLEKPI 554 (567)
Q Consensus 517 ~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~ 554 (567)
.++.|+.+|++.|++... +|... ..++|++||+++|.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 999999999999887643 34333 33899999999986
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=3.2e-15 Score=155.96 Aligned_cols=239 Identities=23% Similarity=0.274 Sum_probs=185.7
Q ss_pred cceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccC--CCCCCCeeEEee
Q 008394 283 SNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLE--DPRFTEVKYLHW 360 (567)
Q Consensus 283 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~--~~~~~~L~~L~l 360 (567)
...++.+..+++.+..+...+|.. .+|+.|++.+| .++++| ...+++|++|++
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~-------~~L~~l~~~~n------------------el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRI-------TSLVSLSAAYN------------------ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhh-------hhHHHHHhhhh------------------hhhhCCCcccccceeeeeee
Confidence 456788888889888888888876 99999999887 455565 334789999999
Q ss_pred CCCCCCCCCCCCC--C-CCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCc
Q 008394 361 HGYPLKSMPSNIC--A-EQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSK 437 (567)
Q Consensus 361 ~~~~~~~l~~~~~--~-~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 437 (567)
..|.+..+|..+. + ..|..|+.+.|.+..++..-...++.|+.|.+.+|..-. .....+.++++|++|+|++|.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd---~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD---SCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc---cchhhhccccceeeeeecccc
Confidence 9999999998654 2 348888899999998886655578899999999997633 234457789999999999998
Q ss_pred cCCccCC-cccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCccCc-cCcc
Q 008394 438 SLKSLPA-GIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLK-SLPS 513 (567)
Q Consensus 438 ~~~~~p~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~ 513 (567)
+.++|+ .+.++..|+.|+||+| .+..+|..... .|++|...+|.+..+| .+.++++|+.+|++.|.+.. .+|.
T Consensus 395 -L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 -LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred -cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhh
Confidence 788885 4678999999999995 57777765543 9999999999999999 89999999999999988654 3444
Q ss_pred cccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccc
Q 008394 514 SLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 514 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 553 (567)
... .++|++|+++||.....--+.+..+.++...+++-+
T Consensus 472 ~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 472 ALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 333 389999999998864333333444555555554443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=4.4e-14 Score=141.04 Aligned_cols=235 Identities=19% Similarity=0.100 Sum_probs=135.1
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCC--------CCCCCceEEEccCC
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSN--------ICAEQLVFLEVPNS 385 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~--------~~~~~L~~L~l~~n 385 (567)
.+++.|.+.++.........++. .+.. .++++++.+.++.+...+.. ..+++|+.|++++|
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~------~l~~-----~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALAS------ALRP-----QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHH------HHhh-----CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 66777777776543322112222 2222 23677777777665532211 12567788888877
Q ss_pred cccccchhhhhhccC---CcEEecccCccccccCC-CCCCCCCC-cCCcEEecCCCccCC----ccCCcccCCCCCcEEE
Q 008394 386 SIEQLWDGMKQHRGK---LNQIIHATCKMLIAKTP-NPTLIPHL-NKLVILNLRGSKSLK----SLPAGIFNLEFLTTLD 456 (567)
Q Consensus 386 ~i~~l~~~~~~~l~~---L~~L~l~~~~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~ 456 (567)
.+.......+..+.. |++|++++|+....... ....+..+ ++|+.|++++|.+.. .++..+..+++|++|+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 776433332223443 88888887754210000 01123344 777888888877552 2334455667788888
Q ss_pred cCCCCCCCc----CCcccc--CCCceeeccCccCc-----ccChhhhccCCCcEEecCCCccCccCccccc-----CCCC
Q 008394 457 LSGCPKLKR----LPEISS--SNTSCLFLSGTAIE-----ELPSSIELLLRLEYLDLSDCKRLKSLPSSLC-----KLKS 520 (567)
Q Consensus 457 Ls~~~~~~~----~~~~~~--~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~-----~l~~ 520 (567)
+++|..... ++.... .+|++|++++|.++ .++..+..+++|++|++++|++....+..+. ..++
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 887765421 111111 37888888887765 2344566778888888888875542221111 2468
Q ss_pred CcEEeccCCCCC----cccCcccCCCCCcceeccccccccccc
Q 008394 521 LEILDLSGCSNL----QRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 521 L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
|+.|++++|.+. ..++..+..+++|+.+++++|.++..+
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 888888888764 223344556678888888888877654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=2.3e-14 Score=136.08 Aligned_cols=242 Identities=18% Similarity=0.145 Sum_probs=129.3
Q ss_pred cceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCcccccccccc--------ccccCccccC---CCC
Q 008394 283 SNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSL--------ENKCKVSYLE---DPR 351 (567)
Q Consensus 283 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l--------~~~~~l~~~~---~~~ 351 (567)
+..+-.|.++-+.+..+.+.+|.. + ++||+|++++|.++......|.. + ..-..+.++| +.+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~--l----~~LRrLdLS~N~Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKT--L----HRLRRLDLSKNNISFIAPDAFKG-LASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred CCcceEEEeccCCcccCChhhccc--h----hhhceecccccchhhcChHhhhh-hHhhhHHHhhcCCchhhhhhhHhhh
Confidence 455677999999999999999999 8 99999999999876665544432 0 0001122222 222
Q ss_pred CCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccc---------cCCCCC
Q 008394 352 FTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIA---------KTPNPT 420 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~~~ 420 (567)
+..++.|.+.-|++..++... .+++|..|.+.+|.+..++++.+..+..++.+.+..|+.... ....+.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 223333333333333333222 245555555555555555555555555555555555542110 000011
Q ss_pred CCCCCcCCcEEec-------------------------CCCccCCccC-CcccCCCCCcEEEcCCCCCCCcCCccccC--
Q 008394 421 LIPHLNKLVILNL-------------------------RGSKSLKSLP-AGIFNLEFLTTLDLSGCPKLKRLPEISSS-- 472 (567)
Q Consensus 421 ~~~~l~~L~~L~l-------------------------~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~-- 472 (567)
.++......-..+ +.|......| ..|..+++|++|+|++|.....-+..+..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 1111111110000 0111112222 23556777777777765443333333322
Q ss_pred CCceeeccCccCcccChh-hhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCC
Q 008394 473 NTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSN 531 (567)
Q Consensus 473 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 531 (567)
.+++|+|..|++..+... |.++..|+.|++.+|+++...|..|..+.+|.+|++-.|+.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 677777777777665443 66677777777777776666676677777777777665554
No 23
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.35 E-value=6.3e-11 Score=117.24 Aligned_cols=226 Identities=19% Similarity=0.246 Sum_probs=148.4
Q ss_pred CCCchHHHHHHHHHhccc---CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-----------------------CceE
Q 008394 1 MVGVESIVEEIESLLAVE---SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-----------------------EGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-----------------------~~~~ 54 (567)
|||+++.+++|..++... ......+.|+|++|+|||+||+.+++.+...+ ..++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 85 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVL 85 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEE
Confidence 699999999999988642 23355789999999999999999998754322 2355
Q ss_pred EEEcCccccHHHHHHHHhhcCC-------------------CCCCceEEEEeCChhhhhccC--cccEEEcCCCCHHHHH
Q 008394 55 FLENVREESQDQEESLIESLDW-------------------LTPVCRIIITTRNKQVLRNWG--VRKIYEMEALEYHHAL 113 (567)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~ilvTtR~~~~~~~~~--~~~~~~l~~L~~~~~~ 113 (567)
++|+++.......+.+...+.. ..+.+-|..||+...+...+. ....+++++++.++..
T Consensus 86 ~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~ 165 (305)
T TIGR00635 86 FIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELA 165 (305)
T ss_pred EEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHH
Confidence 6777666555555555433211 122345556677654433321 1246789999999999
Q ss_pred HHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHHHHHhcc---------CCHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 008394 114 ELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVLGCFLYK---------MEKEVWDSAINKLQRIHHPSILQILKISY 182 (567)
Q Consensus 114 ~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~~~~l~~---------~~~~~w~~~~~~l~~~~~~~l~~~l~~s~ 182 (567)
+++.+.+... .-+++....|++.|+|.|-.+..++..+.. .+.+.... ....+...|
T Consensus 166 ~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~------------~l~~l~~~~ 233 (305)
T TIGR00635 166 EIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK------------ALEMLMIDE 233 (305)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH------------HHHHhCCCC
Confidence 9999887543 234557889999999999776655553210 01111111 112245567
Q ss_pred hcCCHHHHHHHH-hhcccCCC-CChhHHHHHhhhcCCCchhhhH-HHhhcCCeEEecCC
Q 008394 183 DGLDDKEKNIFL-DVACFFQG-EDVNPVMKFLNASGFYPEIGIS-VLVDKSLIVISNNN 238 (567)
Q Consensus 183 ~~L~~~~k~~~~-~~~~fp~~-~~~~~l~~~w~~~~~~~~~~l~-~L~~~~lv~~~~~~ 238 (567)
..+++..+..+. .++.+..+ +.++.+...+..........++ .|++++|+...+.+
T Consensus 234 ~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 234 LGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 788888887776 44666543 4667777777766666677678 69999999855433
No 24
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.31 E-value=4e-11 Score=119.42 Aligned_cols=231 Identities=17% Similarity=0.206 Sum_probs=149.0
Q ss_pred CCCchHHHHHHHHHhccc---CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-----------------------CceE
Q 008394 1 MVGVESIVEEIESLLAVE---SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-----------------------EGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-----------------------~~~~ 54 (567)
|+|+++.++.+..++... ......+.|+|++|+|||++|+.+++.+...+ ..++
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl 106 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVL 106 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEE
Confidence 689999999999888642 23456899999999999999999988643221 2456
Q ss_pred EEEcCccccHHHHHHHHhhcCC-------------------CCCCceEEEEeCChhhhhccC--cccEEEcCCCCHHHHH
Q 008394 55 FLENVREESQDQEESLIESLDW-------------------LTPVCRIIITTRNKQVLRNWG--VRKIYEMEALEYHHAL 113 (567)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~ilvTtR~~~~~~~~~--~~~~~~l~~L~~~~~~ 113 (567)
++|+++.......+.+...+.. ..+.+-|..||+...+...+. ....+++++++.++..
T Consensus 107 ~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~ 186 (328)
T PRK00080 107 FIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELE 186 (328)
T ss_pred EEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHH
Confidence 6777766555444444332211 112344556666554433321 1246899999999999
Q ss_pred HHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHHHhccCCHHHHHHHHH--HHhhcCchhHHHHHHHHHhcCCHHH
Q 008394 114 ELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGCFLYKMEKEVWDSAIN--KLQRIHHPSILQILKISYDGLDDKE 189 (567)
Q Consensus 114 ~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~--~l~~~~~~~l~~~l~~s~~~L~~~~ 189 (567)
+++.+.+.... .+++.+..|++.|+|.|-.+..+...+. .|..... .+....-......+...+..|++..
T Consensus 187 ~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~ 261 (328)
T PRK00080 187 KIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKGDGVITKEIADKALDMLGVDELGLDEMD 261 (328)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHH
Confidence 99998876443 3445889999999999965555554321 1211110 0000001223344556677888888
Q ss_pred HHHHH-hhcccCCC-CChhHHHHHhhhcCCCchhhhH-HHhhcCCeEEec
Q 008394 190 KNIFL-DVACFFQG-EDVNPVMKFLNASGFYPEIGIS-VLVDKSLIVISN 236 (567)
Q Consensus 190 k~~~~-~~~~fp~~-~~~~~l~~~w~~~~~~~~~~l~-~L~~~~lv~~~~ 236 (567)
+..+. ....|+.+ +..+.+...+..+....+..++ .|++.+|++...
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 262 RKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCC
Confidence 88876 66667655 4667777777666666666677 899999997554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=2.1e-13 Score=129.65 Aligned_cols=209 Identities=18% Similarity=0.140 Sum_probs=120.3
Q ss_pred CCeeEEeeCCCCCCCCCCCCC--CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCC-------
Q 008394 353 TEVKYLHWHGYPLKSMPSNIC--AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIP------- 423 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------- 423 (567)
.....+.++.|.|+.+|...+ +++|++||+++|.|+.+.+..|..++.|..|-+.++..++ +.+ ...|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~-k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLP-KGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhh-hhHhhhHHHHHH
Confidence 466777888888888887654 6788888888888888877777777777777666633332 222 22334
Q ss_pred -----------------CCcCCcEEecCCCccCCccCC-cccCCCCCcEEEcCCCCCCC------------cCCccccC-
Q 008394 424 -----------------HLNKLVILNLRGSKSLKSLPA-GIFNLEFLTTLDLSGCPKLK------------RLPEISSS- 472 (567)
Q Consensus 424 -----------------~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~Ls~~~~~~------------~~~~~~~~- 472 (567)
.++.|..|.+.+|. ...++. ++..+..++++.+..|+... ..|.....
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 44555555555554 444443 45556666666655553110 00000000
Q ss_pred -----------------------CCcee----eccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEE
Q 008394 473 -----------------------NTSCL----FLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEIL 524 (567)
Q Consensus 473 -----------------------~L~~L----~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 524 (567)
.++.+ ....+.....|. .|.++++|+.|++++|++...-+.+|..+..++.|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 01111 111111223343 36677777777777777666666667777777777
Q ss_pred eccCCCCCcccCcccCCCCCcceeccccccccccchhhhh
Q 008394 525 DLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASSK 564 (567)
Q Consensus 525 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~~ 564 (567)
.+..|++...--..|.++..|+.|+|.+|+|+-+-+..|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 7777655433333466677777777777777666555553
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=1.1e-12 Score=131.05 Aligned_cols=255 Identities=19% Similarity=0.158 Sum_probs=160.0
Q ss_pred EEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCC--ccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 286 LWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGY--KCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 286 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
++.+.++.+.+.......+.. .....++++.+.+..+..+. .....++. .+. .+++|+.|++++|
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~--~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~------~l~-----~~~~L~~L~l~~~ 91 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALAS--ALRPQPSLKELCLSLNETGRIPRGLQSLLQ------GLT-----KGCGLQELDLSDN 91 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHH--HHhhCCCceEEeccccccCCcchHHHHHHH------HHH-----hcCceeEEEccCC
Confidence 566777776654322111111 11222678888887765432 10011111 122 3459999999999
Q ss_pred CCCCCC-CCC-CC---CCceEEEccCCcccc-----cchhhhhhc-cCCcEEecccCcccccc-CCCCCCCCCCcCCcEE
Q 008394 364 PLKSMP-SNI-CA---EQLVFLEVPNSSIEQ-----LWDGMKQHR-GKLNQIIHATCKMLIAK-TPNPTLIPHLNKLVIL 431 (567)
Q Consensus 364 ~~~~l~-~~~-~~---~~L~~L~l~~n~i~~-----l~~~~~~~l-~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L 431 (567)
.+.... ..+ .+ ++|+.|++++|.+.. +...+. .+ ++|++|++++|...... ......+..+++|++|
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 876422 111 12 459999999998873 222333 55 89999999999753100 0112234567789999
Q ss_pred ecCCCccCC----ccCCcccCCCCCcEEEcCCCCCCCcC----Cccc--cCCCceeeccCccCccc-Chhh-hc----cC
Q 008394 432 NLRGSKSLK----SLPAGIFNLEFLTTLDLSGCPKLKRL----PEIS--SSNTSCLFLSGTAIEEL-PSSI-EL----LL 495 (567)
Q Consensus 432 ~l~~~~~~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~----~~~~--~~~L~~L~l~~~~i~~l-p~~~-~~----l~ 495 (567)
++++|.+.+ .++..+..+++|++|++++|...... +... ..+|++|++++|.++.. +..+ .. .+
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 999998553 23444556789999999998654321 1111 23799999999988742 1222 22 37
Q ss_pred CCcEEecCCCccC----ccCcccccCCCCCcEEeccCCCCCcc----cCcccCCC-CCcceecccccc
Q 008394 496 RLEYLDLSDCKRL----KSLPSSLCKLKSLEILDLSGCSNLQR----LPECLGQL-SSLGTLLLEKPI 554 (567)
Q Consensus 496 ~L~~L~l~~~~~~----~~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l-~~L~~L~l~~~~ 554 (567)
.|++|++++|.+. ..++..+..+++|+.+++++|..... +.+.+... +.|+.|++..|.
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9999999999865 23445567779999999999988744 44445555 689999988775
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=8.2e-10 Score=126.29 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=115.4
Q ss_pred CCCceEEEEeCChhhhh--cc-CcccEEEcC----CCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHHHH
Q 008394 78 TPVCRIIITTRNKQVLR--NW-GVRKIYEME----ALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLGCF 150 (567)
Q Consensus 78 ~~~~~ilvTtR~~~~~~--~~-~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 150 (567)
..+..+|||||...... .. ......++. +|+.+|+.++|....+..- +.+.+..+.+.|+|.|+++..++..
T Consensus 150 ~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 35568889999842211 11 112345555 8999999999987765443 3446889999999999999998887
Q ss_pred hccCCHHHHHHHHHHHhhcCchhHHHHHHHH-HhcCCHHHHHHHHhhcccCCCCChhHHHHHhhhcCCCchhhhHHHhhc
Q 008394 151 LYKMEKEVWDSAINKLQRIHHPSILQILKIS-YDGLDDKEKNIFLDVACFFQGEDVNPVMKFLNASGFYPEIGISVLVDK 229 (567)
Q Consensus 151 l~~~~~~~w~~~~~~l~~~~~~~l~~~l~~s-~~~L~~~~k~~~~~~~~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~ 229 (567)
+...+.. .......+.......+...+... ++.||+..++.+...|+++ .++.+....+.. .-.....+++|.+.
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~ 304 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQ 304 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHC
Confidence 7543210 01111222222234566655444 8999999999999999986 555443333332 22235669999999
Q ss_pred CCeEE-ec--CCcEEehHHHHHHHHHHhhhh
Q 008394 230 SLIVI-SN--NNKITMHDWLQELGRDIVSQE 257 (567)
Q Consensus 230 ~lv~~-~~--~~~~~~H~~v~~~~~~~~~~~ 257 (567)
+++.. .+ ...|+.|++++++.+.....+
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99653 33 347899999999999876433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=4.2e-12 Score=116.65 Aligned_cols=209 Identities=21% Similarity=0.131 Sum_probs=136.7
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
-|.+|..+.++.|.-..+..... -+.|+++.+.+..+...+.-. |.=...|......-...-+....+.-...|+
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~----pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL----PETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc----chhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 35677777777776555544433 456778877776555422111 1111112222111110111112233456788
Q ss_pred EEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCc
Q 008394 430 ILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 430 ~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 509 (567)
.|||++|. +..+..+..-+|.++.|++|+|.....-.-....+|..|+|++|.++.+..+-.++.+++.|.+++|. +.
T Consensus 288 elDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE 365 (490)
T KOG1259|consen 288 ELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IE 365 (490)
T ss_pred hccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hh
Confidence 88888887 67777777778888888888876544333344458888888888888887788888999999999876 33
Q ss_pred cCcccccCCCCCcEEeccCCCCCc-ccCcccCCCCCcceeccccccccccchhhhhcc
Q 008394 510 SLPSSLCKLKSLEILDLSGCSNLQ-RLPECLGQLSSLGTLLLEKPILREYQKASSKFL 566 (567)
Q Consensus 510 ~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~~~l 566 (567)
.+ .+++++-+|..|++++|++-. .-...++++|.|+.+.+.+|.++.+|+.-.+.|
T Consensus 366 ~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVL 422 (490)
T KOG1259|consen 366 TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVL 422 (490)
T ss_pred hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHH
Confidence 44 348888899999999987643 123558899999999999999999888766543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.9e-12 Score=120.33 Aligned_cols=204 Identities=15% Similarity=0.124 Sum_probs=150.4
Q ss_pred CCCCeeEEeeCCCCCCCCCC--CC-CCCCceEEEccCCcccccch--hhhhhccCCcEEecccCccccccCCCCCCCCCC
Q 008394 351 RFTEVKYLHWHGYPLKSMPS--NI-CAEQLVFLEVPNSSIEQLWD--GMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHL 425 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~n~i~~l~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 425 (567)
.+.+||.+.+.++.+...+. .. .+++++.||++.|-+..... .+..++++|+.|+|+.|+... .. ....-..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~-~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FI-SSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-Cc-cccchhhh
Confidence 45689999999998887774 33 38899999999997665322 234599999999999998653 11 11122368
Q ss_pred cCCcEEecCCCccCC-ccCCcccCCCCCcEEEcCCCCCC--CcCCccccCCCceeeccCccCcccC--hhhhccCCCcEE
Q 008394 426 NKLVILNLRGSKSLK-SLPAGIFNLEFLTTLDLSGCPKL--KRLPEISSSNTSCLFLSGTAIEELP--SSIELLLRLEYL 500 (567)
Q Consensus 426 ~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~Ls~~~~~--~~~~~~~~~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L 500 (567)
++|+.|.|+.|++.. .+......+|+|..|+|.+|... ...+......|++|+|++|.+-.++ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 899999999998652 23334557899999999998522 2344555568999999999998877 458889999999
Q ss_pred ecCCCccCc-cCccc-----ccCCCCCcEEeccCCCCC--cccCcccCCCCCcceeccccccccc
Q 008394 501 DLSDCKRLK-SLPSS-----LCKLKSLEILDLSGCSNL--QRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 501 ~l~~~~~~~-~~p~~-----~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
+++.|.... .+|+. ...+++|+.|+++.|+.. .++ ..+..+++|+.|.+..|.++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-chhhccchhhhhhcccccccc
Confidence 999887543 23433 467889999999998873 333 346678888888888887755
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=6.4e-12 Score=125.02 Aligned_cols=177 Identities=28% Similarity=0.357 Sum_probs=115.2
Q ss_pred CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCc
Q 008394 374 AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLT 453 (567)
Q Consensus 374 ~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 453 (567)
+..-...|++.|++..+|..+. .+..|+.+.+.+|.+.. .+..++.+..|.+||++.|. +..+|..++.|+ |+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~-~f~~Le~liLy~n~~r~----ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEAC-AFVSLESLILYHNCIRT----IPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LK 146 (722)
T ss_pred ccchhhhhccccccccCchHHH-HHHHHHHHHHHhcccee----cchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ce
Confidence 3444556677777777766666 66667777776665432 24456666677777777666 556666565544 56
Q ss_pred EEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCC
Q 008394 454 TLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSN 531 (567)
Q Consensus 454 ~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 531 (567)
.|-+++ ++++.+|..+.. .|..|+.+.|.+..+|+.++++..|+.|++..|. ...+|+++.. -.|..||++.|+
T Consensus 147 vli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~-LpLi~lDfScNk- 222 (722)
T KOG0532|consen 147 VLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCNK- 222 (722)
T ss_pred eEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhC-CceeeeecccCc-
Confidence 666655 445555554443 6666777777777778778888888888777766 4456666663 356777777644
Q ss_pred CcccCcccCCCCCcceeccccccccccchh
Q 008394 532 LQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 532 ~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
+..+|-.|..|+.|++|-|.+|.+.+=|..
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 446777777788888888888877774443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=1.1e-10 Score=107.49 Aligned_cols=195 Identities=20% Similarity=0.167 Sum_probs=115.3
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccc--cc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQ--LW 391 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~--l~ 391 (567)
.+|+.+.++.++..... ++.-.. +.|.++.+++..+...|...-...+.....+.-.... +.
T Consensus 214 ~~l~~~~~s~~~~~~i~------------~~~~~k----ptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~ 277 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIV------------DIELLK----PTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSAL 277 (490)
T ss_pred hhhheeeeeccchhhee------------ceeecC----chhheeeeecccccccccccchhhhcCccCCCCCccCCceE
Confidence 33778888776532222 333333 5788888877766555443322222222222111110 11
Q ss_pred hhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc
Q 008394 392 DGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS 471 (567)
Q Consensus 392 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 471 (567)
..+. ....|+++|+|+|.... .-.++.-.|.++.|++++|. +..+.. +..+++|+.||||+|. +.....+..
T Consensus 278 ~~~d-TWq~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~ 349 (490)
T KOG1259|consen 278 VSAD-TWQELTELDLSGNLITQ----IDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHL 349 (490)
T ss_pred Eecc-hHhhhhhccccccchhh----hhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHh
Confidence 1111 34556677777765432 11234456777777777777 444433 6677788888888753 333333333
Q ss_pred C--CCceeeccCccCcccChhhhccCCCcEEecCCCccCc-cCcccccCCCCCcEEeccCCCCCc
Q 008394 472 S--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLK-SLPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 472 ~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
. ++++|.|++|.++.+ ++++++.+|.+|++.+|++.. +--..++++|.|+++.+.+|++.+
T Consensus 350 KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 2 788888888888776 468888999999999887432 112358899999999999988764
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.9e-10 Score=99.00 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=54.1
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
.+++.|++.+|.+... + .+. ..+.+|+.|++++|.++.++....++.|++|++++|.|+.+...
T Consensus 19 ~~~~~L~L~~n~I~~I------e------~L~----~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI------E------NLG----ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S------TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccc------c------chh----hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 4578888888742111 0 221 13468999999999999998877889999999999999998776
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCC----cccCCCCCcEEEcCC
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPA----GIFNLEFLTTLDLSG 459 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~Ls~ 459 (567)
+...+++|++|++++|+.. .......+..+++|++|++.+|.... .+. -+..+|+|+.||-..
T Consensus 83 l~~~lp~L~~L~L~~N~I~--~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS--DLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHH-TT--EEE-TTS-----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred hHHhCCcCCEEECcCCcCC--ChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 6557899999999998764 34445566788999999999988443 332 255788999987654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=5.8e-10 Score=114.71 Aligned_cols=175 Identities=31% Similarity=0.363 Sum_probs=84.2
Q ss_pred CeeEEeeCCCCCCCCCCCCCCC--CceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 354 EVKYLHWHGYPLKSMPSNICAE--QLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
.+..|++.++.+..++...... +|+.|++++|++.+++..+. .+++|+.|++++|+... .+......+.|+.|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l~~----l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSD----LPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhh-ccccccccccCCchhhh----hhhhhhhhhhhhhe
Confidence 4555555555555555544422 45555555555555544444 45555555555554321 01111144445555
Q ss_pred ecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccC
Q 008394 432 NLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSL 511 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~ 511 (567)
++++|. +..+|..+..+..|+. |.+++|.+...+..+.++.++..|.+.+|+ ...+
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~----------------------l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~ 247 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEE----------------------LDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDL 247 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhh----------------------hhhcCCcceecchhhhhcccccccccCCce-eeec
Confidence 555444 4444443333333444 444445444455555555555555555444 2223
Q ss_pred cccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccc
Q 008394 512 PSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 512 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
+..++.+++|+.|++++|.+. .++. ++.+.+|+.|+++++.+...+
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 444555555666665554433 2222 555555666666555554443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.1e-11 Score=123.26 Aligned_cols=171 Identities=25% Similarity=0.338 Sum_probs=130.9
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
.|..|+.+.+..|.+..+|..++ +..|.+++++.|+++.+|.+++ .--|+.|.+++|+... .|..++..++|.
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~----lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTS----LPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCcccc----CCcccccchhHH
Confidence 34567778888888888887765 7889999999999999998887 4458899999887543 345566888899
Q ss_pred EEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCc
Q 008394 430 ILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 430 ~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 509 (567)
.||.+.|. +..+|..++.+.+|+.|.++.|+...-.+......|..||+++|++..+|..|.+|++|++|-|.+|+ +.
T Consensus 170 ~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-Lq 247 (722)
T KOG0532|consen 170 HLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQ 247 (722)
T ss_pred Hhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCC-CC
Confidence 99999888 77788888899999999999876554444444448999999999999999999999999999999888 44
Q ss_pred cCcccc---cCCCCCcEEeccCC
Q 008394 510 SLPSSL---CKLKSLEILDLSGC 529 (567)
Q Consensus 510 ~~p~~~---~~l~~L~~L~l~~~ 529 (567)
+-|..+ |...=.+.|++.-|
T Consensus 248 SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 248 SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CChHHHHhccceeeeeeecchhc
Confidence 445433 22333455666555
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.98 E-value=6e-09 Score=94.01 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=102.1
Q ss_pred CCCchHHHHHHHHHhcc---cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-----------------------CceE
Q 008394 1 MVGVESIVEEIESLLAV---ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-----------------------EGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-----------------------~~~~ 54 (567)
|||.+..++.+.-++.. ..+.+..+.+||++|+||||||..+.+.+...| ..++
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~IL 105 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDIL 105 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EE
T ss_pred ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEE
Confidence 68999999987766643 234577899999999999999999988543332 3577
Q ss_pred EEEcCccccHHHHHHHHhhcCCC--------CCC-----------ceEEEEeCChhhhhccCcc--cEEEcCCCCHHHHH
Q 008394 55 FLENVREESQDQEESLIESLDWL--------TPV-----------CRIIITTRNKQVLRNWGVR--KIYEMEALEYHHAL 113 (567)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~--------~~~-----------~~ilvTtR~~~~~~~~~~~--~~~~l~~L~~~~~~ 113 (567)
|+|.++..++.+.|.|......+ +++ +-|=.|||...+...+... -+.+++..+.+|-.
T Consensus 106 FIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~ 185 (233)
T PF05496_consen 106 FIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELA 185 (233)
T ss_dssp EECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHH
T ss_pred EEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHH
Confidence 89999999998888888777543 122 2345788887665555332 35689999999999
Q ss_pred HHHHHhhccCCC--ChHHHHHHHHHcCCCchHHHHHHHHhcc
Q 008394 114 ELFSRHAFKQNH--PDELSSKAVKYAQGVPLALKVLGCFLYK 153 (567)
Q Consensus 114 ~l~~~~~~~~~~--~~~~~~~i~~~c~glPLai~~~~~~l~~ 153 (567)
+++.+.+..... .++.+.+|+++|.|-|--..-+-+.+++
T Consensus 186 ~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 186 KIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp HHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 999988765543 3448999999999999766665555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=6.6e-10 Score=98.19 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=4.8
Q ss_pred hhccCCCcEEecCCCc
Q 008394 491 IELLLRLEYLDLSDCK 506 (567)
Q Consensus 491 ~~~l~~L~~L~l~~~~ 506 (567)
+..+++|++|++.+|+
T Consensus 109 L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp GGG-TT--EEE-TT-G
T ss_pred HHcCCCcceeeccCCc
Confidence 3344444444444444
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.1e-09 Score=112.55 Aligned_cols=175 Identities=26% Similarity=0.259 Sum_probs=127.7
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccC-CCC-CC-CeeEEeeCCCCCCCCCCC-CCCCCceEEEccCCcccc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLE-DPR-FT-EVKYLHWHGYPLKSMPSN-ICAEQLVFLEVPNSSIEQ 389 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~-~~-~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~n~i~~ 389 (567)
.++..|++.+|. +..++ ... +. +|+.|++++|.+..+|.. ..+++|+.|++++|++.+
T Consensus 116 ~~l~~L~l~~n~------------------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 116 TNLTSLDLDNNN------------------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred cceeEEecCCcc------------------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence 789999998874 23333 112 22 899999999999999744 458999999999999999
Q ss_pred cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcc
Q 008394 390 LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEI 469 (567)
Q Consensus 390 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~ 469 (567)
++.... ..+.|+.|++++|.... . +........|++|++++|. ....+..+..+.++..|.+.+|.. ..++..
T Consensus 178 l~~~~~-~~~~L~~L~ls~N~i~~--l--~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~ 250 (394)
T COG4886 178 LPKLLS-NLSNLNNLDLSGNKISD--L--PPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPES 250 (394)
T ss_pred hhhhhh-hhhhhhheeccCCcccc--C--chhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eeccch
Confidence 999886 79999999999997542 2 2222355569999999986 455566688899999998777543 222222
Q ss_pred cc--CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCccc
Q 008394 470 SS--SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSS 514 (567)
Q Consensus 470 ~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 514 (567)
.. .++++|++++|.++.++. ++.+.+|+.|+++++......|..
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hccccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 22 257778887777777766 777777888887777766555543
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.90 E-value=4.5e-08 Score=108.40 Aligned_cols=158 Identities=14% Similarity=0.222 Sum_probs=115.0
Q ss_pred cEEEcCCCCHHHHHHHHHHhhcc-CCCChHHHHHHHHHcCCCchHHHHHHHHhccC-------CHHHHHHHHHHHhhcC-
Q 008394 100 KIYEMEALEYHHALELFSRHAFK-QNHPDELSSKAVKYAQGVPLALKVLGCFLYKM-------EKEVWDSAINKLQRIH- 170 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-------~~~~w~~~~~~l~~~~- 170 (567)
..+.+.||+..+.-.+....... ...+.+..+.|.++..|+|+.+..+-.++... ....|..-..++....
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~ 291 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILAT 291 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchh
Confidence 57999999999999999998877 45566689999999999999999999998752 3344544444433222
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhcccCCCCChhHHHHHhhhcCCCchhhhHHHhhcCCeEEec--------CC---c
Q 008394 171 HPSILQILKISYDGLDDKEKNIFLDVACFFQGEDVNPVMKFLNASGFYPEIGISVLVDKSLIVISN--------NN---K 239 (567)
Q Consensus 171 ~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~~lv~~~~--------~~---~ 239 (567)
.+.+...+..-.+.||...|..+...|++...|+.+.+..++..........+......+++.+.. .. |
T Consensus 292 ~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y 371 (849)
T COG3899 292 TDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATY 371 (849)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhH
Confidence 133677899999999999999999999999999988877777643333333344444445544421 11 3
Q ss_pred EEehHHHHHHHHHHhhhh
Q 008394 240 ITMHDWLQELGRDIVSQE 257 (567)
Q Consensus 240 ~~~H~~v~~~~~~~~~~~ 257 (567)
-..|+.+++.+.....+.
T Consensus 372 ~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 372 KFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HhhHHHHHHHHhccCchh
Confidence 378999999887655554
No 39
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.87 E-value=7.2e-09 Score=98.28 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=82.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-C-----------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-F----------------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f----------------------------- 50 (567)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+..++. +
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 799999999999999543 34689999999999999999997643111 0
Q ss_pred ----------------------------------------CceEEEEcCcccc------HHHHHHHHhhcCC--CCCCce
Q 008394 51 ----------------------------------------EGSCFLENVREES------QDQEESLIESLDW--LTPVCR 82 (567)
Q Consensus 51 ----------------------------------------~~~~~~~~~~~~~------~~~~~~l~~~~~~--~~~~~~ 82 (567)
+.++.+|+.+... ..-...+...+.. ....-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 0222334333333 1112222222211 123334
Q ss_pred EEEEeCChhhhhc--------cCcccEEEcCCCCHHHHHHHHHHhhccCC---CChHHHHHHHHHcCCCchHHHH
Q 008394 83 IIITTRNKQVLRN--------WGVRKIYEMEALEYHHALELFSRHAFKQN---HPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 83 ilvTtR~~~~~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~---~~~~~~~~i~~~c~glPLai~~ 146 (567)
+|+++........ .+....+.+++|+.+++++++........ .+++..++|...+||.|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 5555544444333 12234599999999999999999754432 2444679999999999988764
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.8e-10 Score=110.10 Aligned_cols=186 Identities=18% Similarity=0.182 Sum_probs=133.8
Q ss_pred CCCCceEEEccCCcccccch-hhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCc-ccCCC
Q 008394 373 CAEQLVFLEVPNSSIEQLWD-GMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAG-IFNLE 450 (567)
Q Consensus 373 ~~~~L~~L~l~~n~i~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~ 450 (567)
.+++|+.+.+.++.+...+. +..+.|++++.||||+|-... -.+......++|+|+.|+++.|.+.--.... -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 47889999999999998775 444599999999999984321 1111122357999999999999854322221 22589
Q ss_pred CCcEEEcCCCCCCCcCC---ccccCCCceeeccCcc-CcccChhhhccCCCcEEecCCCccCccCc--ccccCCCCCcEE
Q 008394 451 FLTTLDLSGCPKLKRLP---EISSSNTSCLFLSGTA-IEELPSSIELLLRLEYLDLSDCKRLKSLP--SSLCKLKSLEIL 524 (567)
Q Consensus 451 ~L~~L~Ls~~~~~~~~~---~~~~~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L 524 (567)
+|+.|.|++|...-.-- ...+++|+.|+++.|. +..-.....-+..|+.|+|++|++.. .+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 99999999997653221 1233489999999994 33223345567889999999988654 33 348899999999
Q ss_pred eccCCCCCc-ccCcc-----cCCCCCcceeccccccccccch
Q 008394 525 DLSGCSNLQ-RLPEC-----LGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 525 ~l~~~~~~~-~~p~~-----l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
+++.|.... .+|+. ...+++|++|++..|++++++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 999987653 33433 4568999999999999977664
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=4.2e-07 Score=93.48 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=99.2
Q ss_pred CCCchHHHHH---HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc----------------------------
Q 008394 1 MVGVESIVEE---IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD---------------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~---------------------------- 49 (567)
+||++..+.+ +.+++. .+....+.|+|++|+||||+|+.+++.....
T Consensus 14 ~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g 91 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAG 91 (413)
T ss_pred hcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcC
Confidence 5888888776 888884 3455688999999999999999998643221
Q ss_pred CCceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEE--eCChhh--hhcc-CcccEEEcCCCCHHHHHHHHHHhhccC-
Q 008394 50 FEGSCFLENVREESQDQEESLIESLDWLTPVCRIIIT--TRNKQV--LRNW-GVRKIYEMEALEYHHALELFSRHAFKQ- 123 (567)
Q Consensus 50 f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvT--tR~~~~--~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~- 123 (567)
-..++++|+++.....+.+.|...+. .+..+++. |.+... ...+ .....+.+.+++.++..+++.+.+...
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 22466778887777777777766654 35555553 333321 1111 122578999999999999999865431
Q ss_pred ----CCChHHHHHHHHHcCCCchHHHHHHHH
Q 008394 124 ----NHPDELSSKAVKYAQGVPLALKVLGCF 150 (567)
Q Consensus 124 ----~~~~~~~~~i~~~c~glPLai~~~~~~ 150 (567)
...++..+.+++.|+|.|..+..+...
T Consensus 169 ~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 169 RGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred cCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233457788999999999776555443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=5.5e-09 Score=115.19 Aligned_cols=109 Identities=39% Similarity=0.501 Sum_probs=67.2
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEe
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLD 501 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 501 (567)
|..+|.|++||+++|.-.+.+|..++.|-+||+|++++ +.+..+|.++++|.+|.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~----------------------t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD----------------------TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC----------------------CCccccchHHHHHHhhheec
Confidence 45566666666666665666676666677777666666 66677777777777777777
Q ss_pred cCCCccCccCcccccCCCCCcEEeccCCC--CCcccCcccCCCCCcceecccc
Q 008394 502 LSDCKRLKSLPSSLCKLKSLEILDLSGCS--NLQRLPECLGQLSSLGTLLLEK 552 (567)
Q Consensus 502 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~--~~~~~p~~l~~l~~L~~L~l~~ 552 (567)
+..+.....+|..+..+++|++|.+.... ........+..+.+|+.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 77766555565555557777777765432 1122223344555555555433
No 43
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.69 E-value=4.4e-07 Score=83.76 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=109.4
Q ss_pred CCCchHHHHHHHHHhccc---CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-----------------------CceE
Q 008394 1 MVGVESIVEEIESLLAVE---SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-----------------------EGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-----------------------~~~~ 54 (567)
|+|.+..++.+.=.+... ...+-.|.++|++|.||||||.-+++.+...+ ..+.
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVL 107 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVL 107 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeE
Confidence 578888888777666442 24467999999999999999999998653332 3577
Q ss_pred EEEcCccccHHHHHHHHhhcCCC--------CCCceE-----------EEEeCChhhhhccCc--ccEEEcCCCCHHHHH
Q 008394 55 FLENVREESQDQEESLIESLDWL--------TPVCRI-----------IITTRNKQVLRNWGV--RKIYEMEALEYHHAL 113 (567)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~i-----------lvTtR~~~~~~~~~~--~~~~~l~~L~~~~~~ 113 (567)
|+|.++.......|.|..+.... ++++|. =.|||...+...+.. .-+.+++-.+.+|-.
T Consensus 108 FIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~ 187 (332)
T COG2255 108 FIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELE 187 (332)
T ss_pred EEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHH
Confidence 89998888877777776655432 344443 378987765554422 246788999999999
Q ss_pred HHHHHhhc--cCCCChHHHHHHHHHcCCCchHHHHHHHHhc
Q 008394 114 ELFSRHAF--KQNHPDELSSKAVKYAQGVPLALKVLGCFLY 152 (567)
Q Consensus 114 ~l~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 152 (567)
++..+.+. +.+-.++-+.+|+++..|-|--...+-+.++
T Consensus 188 ~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 188 EIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 99998874 3344555799999999999976555555544
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.69 E-value=2.9e-08 Score=107.14 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=71.6
Q ss_pred CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCc-ccChhhhccCCCcEEecC
Q 008394 427 KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIE-ELPSSIELLLRLEYLDLS 503 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~ 503 (567)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..... +|+.|+|++|.++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778889888888888888888999999999887665555543332 6666666666665 456666666666666666
Q ss_pred CCccCccCcccccCC-CCCcEEeccCCCCCc
Q 008394 504 DCKRLKSLPSSLCKL-KSLEILDLSGCSNLQ 533 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l-~~L~~L~l~~~~~~~ 533 (567)
+|.+.+.+|..++.+ .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 666666666655543 345566666655443
No 45
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=4.6e-08 Score=95.26 Aligned_cols=233 Identities=20% Similarity=0.275 Sum_probs=159.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccH-----------------------------------
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQ----------------------------------- 64 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~----------------------------------- 64 (567)
...+.+.++|.|||||||++-.+.. +...|+...|+.+.....+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~ 90 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRA 90 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhH
Confidence 3457899999999999999999998 8888988887654444333
Q ss_pred -----------HHHHHHHhhcCCCCCCceEEEEeCChhhhhccCcccEEEcCCCCHH-HHHHHHHHhhccC------CC-
Q 008394 65 -----------DQEESLIESLDWLTPVCRIIITTRNKQVLRNWGVRKIYEMEALEYH-HALELFSRHAFKQ------NH- 125 (567)
Q Consensus 65 -----------~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~l~~L~~~-~~~~l~~~~~~~~------~~- 125 (567)
++-..+...+....+.-.++.|+|.... ...+.+..+++|+.- ++.++|...+... .+
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 1111111122223444567788886533 233456778877755 7888887766322 12
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhccCCHHHHHHHHHH----Hh------hcCchhHHHHHHHHHhcCCHHHHHHHHh
Q 008394 126 PDELSSKAVKYAQGVPLALKVLGCFLYKMEKEVWDSAINK----LQ------RIHHPSILQILKISYDGLDDKEKNIFLD 195 (567)
Q Consensus 126 ~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~----l~------~~~~~~l~~~l~~s~~~L~~~~k~~~~~ 195 (567)
....+..|.++.+|.|++|...++..+.....+....+.. +. ....+.....+..||.=|....+-.|..
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~r 247 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGR 247 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcc
Confidence 2237889999999999999999999987655544433331 11 1123577889999999999999999999
Q ss_pred hcccCCCCChhHHHHHhhhcCCC-------chhhhHHHhhcCCeEEec---CCcEEehHHHHHHHHHHhhhhc
Q 008394 196 VACFFQGEDVNPVMKFLNASGFY-------PEIGISVLVDKSLIVISN---NNKITMHDWLQELGRDIVSQES 258 (567)
Q Consensus 196 ~~~fp~~~~~~~l~~~w~~~~~~-------~~~~l~~L~~~~lv~~~~---~~~~~~H~~v~~~~~~~~~~~~ 258 (567)
++.|...|+.+. ..|.+-|-. ....+..+++.+++...+ ...|+.-+-++.|+.+...+..
T Consensus 248 La~~~g~f~~~l--~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 248 LAVFVGGFDLGL--ALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred hhhhhhhhcccH--HHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999988762 223322222 233477788999987655 4468888888888887776653
No 46
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.67 E-value=2.3e-06 Score=88.01 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=129.7
Q ss_pred CCCchHHHHHHHHHhccc--CCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC--ceEEEEcCccc--------------
Q 008394 1 MVGVESIVEEIESLLAVE--SKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE--GSCFLENVREE-------------- 62 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~-------------- 62 (567)
|+||++++++|...+... ......+.|+|++|+|||++++.+++++....+ ..+++......
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 689999999999998542 234456899999999999999999987654331 22233211000
Q ss_pred ----------cH---------------------HHHHHH---------HhhcCCC--CCCce--EEEEeCChhhhhccC-
Q 008394 63 ----------SQ---------------------DQEESL---------IESLDWL--TPVCR--IIITTRNKQVLRNWG- 97 (567)
Q Consensus 63 ----------~~---------------------~~~~~l---------~~~~~~~--~~~~~--ilvTtR~~~~~~~~~- 97 (567)
.. +..+.+ .....+. ..+++ +|.++..........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~ 191 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDP 191 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCH
Confidence 00 111111 1111111 12323 566655544333221
Q ss_pred ------cccEEEcCCCCHHHHHHHHHHhhccC----CCChHHHHHHHHHc----CCCchHHHHHHHHhc-----c---CC
Q 008394 98 ------VRKIYEMEALEYHHALELFSRHAFKQ----NHPDELSSKAVKYA----QGVPLALKVLGCFLY-----K---ME 155 (567)
Q Consensus 98 ------~~~~~~l~~L~~~~~~~l~~~~~~~~----~~~~~~~~~i~~~c----~glPLai~~~~~~l~-----~---~~ 155 (567)
....+.+++++.++..+++..++... ..+++..+.+++.+ |..+.|+..+-.+.. + .+
T Consensus 192 ~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~ 271 (394)
T PRK00411 192 RVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVT 271 (394)
T ss_pred HHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 12467899999999999999876322 22333455555554 556777766544321 1 25
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhcccC----CCCChhHHHHH----hhhcCCCc------hh
Q 008394 156 KEVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVACFF----QGEDVNPVMKF----LNASGFYP------EI 221 (567)
Q Consensus 156 ~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp----~~~~~~~l~~~----w~~~~~~~------~~ 221 (567)
.+.+..+.+.+. .......+..||.+.|..+..++... .......+... -..-+..+ ..
T Consensus 272 ~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~ 344 (394)
T PRK00411 272 EEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYE 344 (394)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 666766666551 23456678899999988877666432 22233222211 11122221 23
Q ss_pred hhHHHhhcCCeEEe
Q 008394 222 GISVLVDKSLIVIS 235 (567)
Q Consensus 222 ~l~~L~~~~lv~~~ 235 (567)
.++.|...|++...
T Consensus 345 ~l~~L~~~glI~~~ 358 (394)
T PRK00411 345 YINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHhcCCeEEE
Confidence 48888999998864
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.6e-07 Score=90.95 Aligned_cols=192 Identities=18% Similarity=0.269 Sum_probs=118.4
Q ss_pred HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC----------------------------CceEEEEcCccc
Q 008394 11 IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF----------------------------EGSCFLENVREE 62 (567)
Q Consensus 11 l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f----------------------------~~~~~~~~~~~~ 62 (567)
|.+++ +.+.+....+||++|+||||||+.+.......| ..++|+|.++.+
T Consensus 39 lrr~v--~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 39 LRRAV--EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred HHHHH--hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 44455 346778899999999999999999976432222 467889999999
Q ss_pred cHHHHHHHHhhcCCCCCCceEEEEeCChhhhhcc-----CcccEEEcCCCCHHHHHHHHHHhhccCC---------CChH
Q 008394 63 SQDQEESLIESLDWLTPVCRIIITTRNKQVLRNW-----GVRKIYEMEALEYHHALELFSRHAFKQN---------HPDE 128 (567)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~---------~~~~ 128 (567)
++.|-|.+..... .|..|+|-+..+...-.+ ....++.+++|+.++..+++.+.+.... -+++
T Consensus 117 nK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~ 193 (436)
T COG2256 117 NKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEE 193 (436)
T ss_pred Chhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHH
Confidence 9999998887764 677777643333322222 2346899999999999999998442221 1234
Q ss_pred HHHHHHHHcCCCchHHHHHHHHh---ccC----CHHHHHHHHHHHhhc------CchhHHHHHHHHHhcCCHHHHHHHHh
Q 008394 129 LSSKAVKYAQGVPLALKVLGCFL---YKM----EKEVWDSAINKLQRI------HHPSILQILKISYDGLDDKEKNIFLD 195 (567)
Q Consensus 129 ~~~~i~~~c~glPLai~~~~~~l---~~~----~~~~w~~~~~~l~~~------~~~~l~~~l~~s~~~L~~~~k~~~~~ 195 (567)
....+++.++|---+.-...... ... ..+..+..+++-... .+=++.+++..|...=++.. ..+.+
T Consensus 194 a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA-ALyyl 272 (436)
T COG2256 194 ALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA-ALYYL 272 (436)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH-HHHHH
Confidence 67788888888765444333322 211 234444444432211 11246677777776654432 23333
Q ss_pred hcccCCCCChhHH
Q 008394 196 VACFFQGEDVNPV 208 (567)
Q Consensus 196 ~~~fp~~~~~~~l 208 (567)
+-++-.+.+...+
T Consensus 273 ARmi~~GeDp~yi 285 (436)
T COG2256 273 ARMIEAGEDPLYI 285 (436)
T ss_pred HHHHhcCCCHHHH
Confidence 3445555544433
No 48
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.56 E-value=6e-06 Score=83.04 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=93.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-C----------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-E---------------------------- 51 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-~---------------------------- 51 (567)
++|+++.++.+.+++.. +..+.+.++|++|+||||+|+.+.+.+..+- .
T Consensus 17 ~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (337)
T PRK12402 17 ILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHF 94 (337)
T ss_pred hcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhh
Confidence 58999999999999853 3445788999999999999999887653211 1
Q ss_pred --------------------------------ceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-C
Q 008394 52 --------------------------------GSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-G 97 (567)
Q Consensus 52 --------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~ 97 (567)
.++.++++........+.+...+......+++|+||.... +...+ .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~s 174 (337)
T PRK12402 95 LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRS 174 (337)
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcC
Confidence 1222333322222333334433333345577887775432 22222 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHH
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~ 146 (567)
....+++.+++.++..+++.+.+...+ -+++..+.+++.++|.+-.+..
T Consensus 175 r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 175 RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 224788999999999999988764433 3455889999999997755543
No 49
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.56 E-value=3.4e-06 Score=89.32 Aligned_cols=240 Identities=14% Similarity=0.133 Sum_probs=151.3
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccH------------------------
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQ------------------------ 64 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~------------------------ 64 (567)
.+|.+.|... .+.+.+.|..|+|.||||++.+..+ ....-..+.|++--.+.+.
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~ 102 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQ 102 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHH
Confidence 3455556433 4678999999999999999999988 4556778888763322222
Q ss_pred ------------HHHHHHHhhc------------------------------CCCCCCceEEEEeCChhhhhcc---Ccc
Q 008394 65 ------------DQEESLIESL------------------------------DWLTPVCRIIITTRNKQVLRNW---GVR 99 (567)
Q Consensus 65 ------------~~~~~l~~~~------------------------------~~~~~~~~ilvTtR~~~~~~~~---~~~ 99 (567)
...+.+...+ ....++-.+|||||+.--..-- -.+
T Consensus 103 ~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 103 TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehh
Confidence 1111111111 1125667899999987332211 112
Q ss_pred cEEEcC----CCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHHHHhccC-CHHHHHHHHHHHhhcCchhH
Q 008394 100 KIYEME----ALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLGCFLYKM-EKEVWDSAINKLQRIHHPSI 174 (567)
Q Consensus 100 ~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~l 174 (567)
..+++. .++.+|+.++|....+. .-+....+.+.+..+|-+-|+..++=+++.. +.+.-...+. .. .+.+
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~l-~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l 257 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGSL-PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS---GA-ASHL 257 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCCC-CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---ch-HHHH
Confidence 233333 48899999999977532 2223358899999999999999999888832 3322221111 11 1222
Q ss_pred -HHHHHHHHhcCCHHHHHHHHhhcccCCCCChhHHHHHhhhcCCCchhhhHHHhhcCCeEE--e-cCCcEEehHHHHHHH
Q 008394 175 -LQILKISYDGLDDKEKNIFLDVACFFQGEDVNPVMKFLNASGFYPEIGISVLVDKSLIVI--S-NNNKITMHDWLQELG 250 (567)
Q Consensus 175 -~~~l~~s~~~L~~~~k~~~~~~~~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~~lv~~--~-~~~~~~~H~~v~~~~ 250 (567)
.-....-++.||++.|..+.-+|+++.-- ..+.... .+......-+++|.+++|+.. + +...|+.|.+..||.
T Consensus 258 ~dYL~eeVld~Lp~~l~~FLl~~svl~~f~--~eL~~~L-tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL 334 (894)
T COG2909 258 SDYLVEEVLDRLPPELRDFLLQTSVLSRFN--DELCNAL-TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFL 334 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHHhh--HHHHHHH-hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHH
Confidence 22445568899999999999999984221 1222211 112222334899999998863 2 266899999999999
Q ss_pred HHHhhhhc
Q 008394 251 RDIVSQES 258 (567)
Q Consensus 251 ~~~~~~~~ 258 (567)
+.....+.
T Consensus 335 ~~r~~~~~ 342 (894)
T COG2909 335 RQRLQREL 342 (894)
T ss_pred Hhhhcccc
Confidence 98887753
No 50
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.54 E-value=6.1e-06 Score=80.08 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=42.2
Q ss_pred cEEEcCCCCHHHHHHHHHHhhccC------CCChHHHHHHHHHcCCCchHHHHHHHHh
Q 008394 100 KIYEMEALEYHHALELFSRHAFKQ------NHPDELSSKAVKYAQGVPLALKVLGCFL 151 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~l~~~~~~~~------~~~~~~~~~i~~~c~glPLai~~~~~~l 151 (567)
..+.+++++.+|..+++...+... .-.++..+.|++.++|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 357899999999999998776422 2234588999999999999999888876
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.2e-05 Score=81.17 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=96.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCc-------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEG------- 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~------- 52 (567)
++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.+.. .+..
T Consensus 18 iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~ 96 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAA 96 (363)
T ss_pred ccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccc
Confidence 579999999999988543 23456899999999999999999876521 0111
Q ss_pred -------------------------eEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEcC
Q 008394 53 -------------------------SCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEME 105 (567)
Q Consensus 53 -------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l~ 105 (567)
++++++++......++.+...+.......++|++|.+.. +.... .....++++
T Consensus 97 ~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~ 176 (363)
T PRK14961 97 SRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLK 176 (363)
T ss_pred ccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCC
Confidence 223333333333455566665555455666776665432 32222 122579999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~ 147 (567)
+++.++..+.+...+...+ .+++.++.|++.++|.|-.+...
T Consensus 177 ~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 177 IISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988765433 34457888999999988654433
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.9e-07 Score=100.82 Aligned_cols=92 Identities=24% Similarity=0.330 Sum_probs=52.6
Q ss_pred CCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCc-ccChhhhcc-CC
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIE-ELPSSIELL-LR 496 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~-~lp~~~~~l-~~ 496 (567)
.+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+..+.+|..... +|+.|+|++|.++ .+|..+..+ .+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 3444555555555555544455555555555555555555544444443332 5555555556666 677777653 57
Q ss_pred CcEEecCCCccCccCc
Q 008394 497 LEYLDLSDCKRLKSLP 512 (567)
Q Consensus 497 L~~L~l~~~~~~~~~p 512 (567)
+..+++.+|..+...|
T Consensus 517 ~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 517 RASFNFTDNAGLCGIP 532 (623)
T ss_pred CceEEecCCccccCCC
Confidence 7889999887665544
No 53
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=1.7e-06 Score=81.35 Aligned_cols=127 Identities=13% Similarity=0.198 Sum_probs=80.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCc------------------------eEEEEcCcccc-HHHHH-HHHhhcCC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEG------------------------SCFLENVREES-QDQEE-SLIESLDW 76 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~------------------------~~~~~~~~~~~-~~~~~-~l~~~~~~ 76 (567)
+.+.|+|++|+|||+|+..+++.+...... .+.+|+++... ...|+ .+...++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~ 119 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNR 119 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence 578999999999999999998865332222 23345554332 12232 23332222
Q ss_pred C-CCCceEEEE-eCC---------hhhhhccCcccEEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchH
Q 008394 77 L-TPVCRIIIT-TRN---------KQVLRNWGVRKIYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLA 143 (567)
Q Consensus 77 ~-~~~~~ilvT-tR~---------~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLa 143 (567)
. ..|+.++|+ ++. +++...+.....++++++++++.++++++.+...+ -++++..-|++++.|..-+
T Consensus 120 ~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 120 IKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHT 199 (229)
T ss_pred HHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 2 235556554 443 23344444456899999999999999999886433 4566888899998887655
Q ss_pred HHHHHH
Q 008394 144 LKVLGC 149 (567)
Q Consensus 144 i~~~~~ 149 (567)
+..+-.
T Consensus 200 l~~~l~ 205 (229)
T PRK06893 200 LFDALD 205 (229)
T ss_pred HHHHHH
Confidence 554444
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.51 E-value=1.2e-05 Score=87.39 Aligned_cols=139 Identities=20% Similarity=0.330 Sum_probs=92.6
Q ss_pred CCCchHHHH---HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC---------------------------
Q 008394 1 MVGVESIVE---EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF--------------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~---~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f--------------------------- 50 (567)
|+|.+..+. .+.+.+. .+....+.|+|++|+||||+|+.+++.....|
T Consensus 30 ~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~ 107 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERH 107 (725)
T ss_pred hcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhc
Confidence 578888775 4666664 34556789999999999999999976432211
Q ss_pred --CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhhh----hcc-CcccEEEcCCCCHHHHHHHHHHhhcc-
Q 008394 51 --EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQVL----RNW-GVRKIYEMEALEYHHALELFSRHAFK- 122 (567)
Q Consensus 51 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~----~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~- 122 (567)
..++++|++......+.+.|..... .|..++|++..+... ... .....+.+++++.++..+++.+.+..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 1356778887777777777766543 455566543332211 111 12347999999999999999987641
Q ss_pred --------CCCChHHHHHHHHHcCCCchHH
Q 008394 123 --------QNHPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 123 --------~~~~~~~~~~i~~~c~glPLai 144 (567)
..-+++..+.|++.+.|.--.+
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 1234457788999998865433
No 55
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.49 E-value=1.3e-05 Score=81.54 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=109.1
Q ss_pred CCCchHHHHHHHHHhcc--cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC------ceEEEEcCcccc---------
Q 008394 1 MVGVESIVEEIESLLAV--ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE------GSCFLENVREES--------- 63 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~--------- 63 (567)
|+||++++++|...+.. .......+.|+|++|+|||++++.+++++.+..+ ..+|++......
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 68999999999999864 1234457999999999999999999987643221 233333111000
Q ss_pred -----------------H---------------------HHHHHH--------HhhcCC---CC---CCceEEEEeCChh
Q 008394 64 -----------------Q---------------------DQEESL--------IESLDW---LT---PVCRIIITTRNKQ 91 (567)
Q Consensus 64 -----------------~---------------------~~~~~l--------~~~~~~---~~---~~~~ilvTtR~~~ 91 (567)
. +..+.+ ...+.| .. ....+|.+|+...
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc
Confidence 0 111111 111111 01 1223445554443
Q ss_pred hhhccC-------cccEEEcCCCCHHHHHHHHHHhhcc---CC-CChH---HHHHHHHHcCCCchHHHHHHHH-h--c--
Q 008394 92 VLRNWG-------VRKIYEMEALEYHHALELFSRHAFK---QN-HPDE---LSSKAVKYAQGVPLALKVLGCF-L--Y-- 152 (567)
Q Consensus 92 ~~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~---~~-~~~~---~~~~i~~~c~glPLai~~~~~~-l--~-- 152 (567)
....+. ....+.+++++.++..+++..++.. .. ..++ .+..++....|.|-.+..+... . .
T Consensus 177 ~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 177 FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 222211 1246889999999999999988741 11 1222 3455666677888544332221 1 1
Q ss_pred -c---CCHHHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhc
Q 008394 153 -K---MEKEVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVA 197 (567)
Q Consensus 153 -~---~~~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~ 197 (567)
+ .+.+....+...+. .......+..||.+.+..+..++
T Consensus 257 ~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 257 EGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred cCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 25666666555542 34456678899998887766655
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.47 E-value=2.8e-06 Score=80.08 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=90.2
Q ss_pred chHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCc------------------------eEEEEcC
Q 008394 4 VESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEG------------------------SCFLENV 59 (567)
Q Consensus 4 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~------------------------~~~~~~~ 59 (567)
.+..++++.+++.. .....+.|+|++|+|||++|+.+++........ .+.+|++
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi 99 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDV 99 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeCh
Confidence 34567778887642 334689999999999999999998764322222 3445555
Q ss_pred ccccHH--HHHHHHhhcCC-CCCCceEEEEeCChhhh---------hccCcccEEEcCCCCHHHHHHHHHHhhcc--CCC
Q 008394 60 REESQD--QEESLIESLDW-LTPVCRIIITTRNKQVL---------RNWGVRKIYEMEALEYHHALELFSRHAFK--QNH 125 (567)
Q Consensus 60 ~~~~~~--~~~~l~~~~~~-~~~~~~ilvTtR~~~~~---------~~~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~ 125 (567)
...... ..+.+...+.. ...+..+|+||+..... ..+.....++++++++++..+++...+.. ..-
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~ 179 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL 179 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 433221 13333333221 12345788888754211 11222357899999999999999876532 233
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHH
Q 008394 126 PDELSSKAVKYAQGVPLALKVLGCF 150 (567)
Q Consensus 126 ~~~~~~~i~~~c~glPLai~~~~~~ 150 (567)
+++..+.+++.++|.|..+..+...
T Consensus 180 ~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 180 PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4456788888888888766665443
No 57
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=1e-05 Score=80.73 Aligned_cols=144 Identities=20% Similarity=0.247 Sum_probs=97.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-c------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-D------------------------------ 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~------------------------------ 49 (567)
++|+++.++.+.+++.. +..+.+.|+|++|+||||+|+.+.+.+.. .
T Consensus 19 ~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~ 96 (319)
T PRK00440 19 IVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTA 96 (319)
T ss_pred hcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcC
Confidence 57999999999999954 34456899999999999999999875311 1
Q ss_pred -CC----ceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 50 -FE----GSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 50 -f~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
|. .++++++.........+.+...+......+.+|+++.... ..... .....+++++++.++....+...+..
T Consensus 97 ~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 97 PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH
Confidence 11 1344555544444555566666655556677777765432 11111 12246899999999999999888754
Q ss_pred CC--CChHHHHHHHHHcCCCchHHHH
Q 008394 123 QN--HPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 123 ~~--~~~~~~~~i~~~c~glPLai~~ 146 (567)
.+ -+++....+++.++|.+.-+..
T Consensus 177 ~~~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 177 EGIEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43 3445788999999998865443
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=4e-08 Score=92.93 Aligned_cols=230 Identities=16% Similarity=0.142 Sum_probs=135.9
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCC----CCCCCC--------CCCCCCceEEE
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYP----LKSMPS--------NICAEQLVFLE 381 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~----~~~l~~--------~~~~~~L~~L~ 381 (567)
..+..+++++|.++.+....+.. .+.+.+ +|+..+++.-. ...+|. ....+.|++|+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~------~L~~~~-----~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAK------VLASKK-----ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHH------HHhhcc-----cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 77788888888776665555554 455554 77777776542 122332 22455788888
Q ss_pred ccCCcccc-----cchhhhhhccCCcEEecccCcccccc----------CCCCCCCCCCcCCcEEecCCCccCCccC---
Q 008394 382 VPNSSIEQ-----LWDGMKQHRGKLNQIIHATCKMLIAK----------TPNPTLIPHLNKLVILNLRGSKSLKSLP--- 443 (567)
Q Consensus 382 l~~n~i~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~~~p--- 443 (567)
||+|.+.. +-.-+. .+..|++|.|.+|..-... .........-++|+++....|. .+..+
T Consensus 99 LSDNA~G~~g~~~l~~ll~-s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~ 176 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLS-SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATA 176 (382)
T ss_pred ccccccCccchHHHHHHHH-hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHH
Confidence 88886653 222233 6788888888887531100 0011123345678888777776 33332
Q ss_pred --CcccCCCCCcEEEcCCCCCCCcCC------ccccCCCceeeccCccCc-----ccChhhhccCCCcEEecCCCccCcc
Q 008394 444 --AGIFNLEFLTTLDLSGCPKLKRLP------EISSSNTSCLFLSGTAIE-----ELPSSIELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 444 --~~l~~l~~L~~L~Ls~~~~~~~~~------~~~~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~ 510 (567)
..+...+.|+.+.++.|.....-- ...+.+|+.|+|..|-++ .+...+..+++|+.|++++|.+...
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 234456777777777764322111 122337777777777666 3344566677888888888765433
Q ss_pred Ccc----cc-cCCCCCcEEeccCCCCCcc----cCcccCCCCCcceecccccccc
Q 008394 511 LPS----SL-CKLKSLEILDLSGCSNLQR----LPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 511 ~p~----~~-~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
-.. .+ ...++|+.|.+.+|.+... +...+...|.|.+|+|++|.+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 211 11 2367888888888776532 2233456788888888888773
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=4e-08 Score=101.39 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCeeEEeeCCCCCCCCCC-CCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 353 TEVKYLHWHGYPLKSMPS-NICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
.+|+.+++.+|.+..+.. ...+.+|++|++++|.|+++..-. .+..|+.|++++|.... ...+..++.|+.+
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~--~l~~L~~L~l~~N~i~~-----~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS--TLTLLKELNLSGNLISD-----ISGLESLKSLKLL 167 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccchh--hccchhhheeccCcchh-----ccCCccchhhhcc
Confidence 355555555555555544 333455555555555555443222 23445555555553321 2233334455555
Q ss_pred ecCCCccCCccCCc-ccCCCCCcEEEcCCC
Q 008394 432 NLRGSKSLKSLPAG-IFNLEFLTTLDLSGC 460 (567)
Q Consensus 432 ~l~~~~~~~~~p~~-l~~l~~L~~L~Ls~~ 460 (567)
++++|. +..+... ...+.+|+.+++.+|
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 555544 2222211 234444444444443
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.3e-07 Score=67.18 Aligned_cols=56 Identities=36% Similarity=0.433 Sum_probs=27.5
Q ss_pred CceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCC
Q 008394 474 TSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGC 529 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 529 (567)
|++|++++|.++.+|. .|.++++|++|++++|.+....|..|.++++|+.|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4455555555555543 3445555555555555443333334455555555555544
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.40 E-value=1.7e-08 Score=95.41 Aligned_cols=183 Identities=17% Similarity=0.134 Sum_probs=108.7
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCC--------------CC-CCCCce
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPS--------------NI-CAEQLV 378 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~--------------~~-~~~~L~ 378 (567)
++|++|+++.|.++......+-. -+++ +.+|+.|.+.+|.+-.... .. ..+.|+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~------ll~s-----~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEE------LLSS-----CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred CceeEeeccccccCccchHHHHH------HHHh-----ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 67788888777654443322222 2222 3577888888776543211 11 356788
Q ss_pred EEEccCCcccccch----hhhhhccCCcEEecccCccccccC-CCCCCCCCCcCCcEEecCCCccCCc----cCCcccCC
Q 008394 379 FLEVPNSSIEQLWD----GMKQHRGKLNQIIHATCKMLIAKT-PNPTLIPHLNKLVILNLRGSKSLKS----LPAGIFNL 449 (567)
Q Consensus 379 ~L~l~~n~i~~l~~----~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l 449 (567)
++...+|++...+. ..++..+.|+.+.++.|....... .....+..+++|++|||++|.+... +...++.+
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 88888888876433 344567888888888886532111 0112355789999999999986543 34557788
Q ss_pred CCCcEEEcCCCCCCCcCCc-------cccCCCceeeccCccCc-----ccChhhhccCCCcEEecCCCcc
Q 008394 450 EFLTTLDLSGCPKLKRLPE-------ISSSNTSCLFLSGTAIE-----ELPSSIELLLRLEYLDLSDCKR 507 (567)
Q Consensus 450 ~~L~~L~Ls~~~~~~~~~~-------~~~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~ 507 (567)
++|+.|.+++|.....-.. ...++|+.|.+.+|.|+ .+-..+...+.|..|++++|.+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8999999999865432111 01225555666665554 2222344455566666666554
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=3.7e-05 Score=76.13 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=95.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh------ccCCceEEEE-cCccc-----------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS------SDFEGSCFLE-NVREE----------- 62 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~------~~f~~~~~~~-~~~~~----------- 62 (567)
++|-+..++++.+.+..+ .-.+.+.++|+.|+||||+|..+++.+. .+.+...|.. +-.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHH
Confidence 478889999999999543 2345779999999999999999998652 2334333322 11111
Q ss_pred ---------------------cHHHHHHHHhhcCCCCCCceEEEEeCChhhhh-cc-CcccEEEcCCCCHHHHHHHHHHh
Q 008394 63 ---------------------SQDQEESLIESLDWLTPVCRIIITTRNKQVLR-NW-GVRKIYEMEALEYHHALELFSRH 119 (567)
Q Consensus 63 ---------------------~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~-~~-~~~~~~~l~~L~~~~~~~l~~~~ 119 (567)
....++.|...+.-...++.+|++|.+.+... .. .....++++++++++....+.+.
T Consensus 85 ~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 85 VNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred HhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 11345555555555566788888886654321 11 12358999999999998888765
Q ss_pred hccCCCChHHHHHHHHHcCCCchHHHHH
Q 008394 120 AFKQNHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 120 ~~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
.. ..+.+.++.++..++|.|.-+...
T Consensus 165 ~~--~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 165 YN--DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hc--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43 223335778899999998755433
No 63
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.2e-07 Score=66.42 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=14.9
Q ss_pred CceEEEccCCcccccchhhhhhccCCcEEecccC
Q 008394 376 QLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATC 409 (567)
Q Consensus 376 ~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~ 409 (567)
+|++|++++|++..+++..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC
Confidence 3444444444444444444433444444444433
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=5.6e-05 Score=80.47 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=94.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~ 59 (567)
+||.+..++.|.+++..++ -.+.+.++|..|+||||+|+.+.+.+.. .|...++++..
T Consensus 18 VIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa 96 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA 96 (830)
T ss_pred HcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc
Confidence 5899999999999995432 2356789999999999999988775421 22333444332
Q ss_pred --------------------------------ccccHHHHHHHHhhcCCCCCCceEEEEeCChhhh-hcc-CcccEEEcC
Q 008394 60 --------------------------------REESQDQEESLIESLDWLTPVCRIIITTRNKQVL-RNW-GVRKIYEME 105 (567)
Q Consensus 60 --------------------------------~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~-~~~-~~~~~~~l~ 105 (567)
.......++.|++.+.--....++|++|++.... ..+ ..-..++++
T Consensus 97 s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk 176 (830)
T PRK07003 97 SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLK 176 (830)
T ss_pred ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecC
Confidence 2222233444444443334567777777665332 221 112479999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCc-hHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVP-LALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glP-Lai~~~ 147 (567)
+++.++..+.+.+.....+ ..++..+.|++.++|.. -|+..+
T Consensus 177 ~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 177 QMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999998775433 34557889999998865 455443
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=5e-05 Score=76.92 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=96.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc----------------------cCCceEEEE-
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS----------------------DFEGSCFLE- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~----------------------~f~~~~~~~- 57 (567)
++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+.+.+.. +++ ..+++
T Consensus 16 iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~ 93 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDA 93 (355)
T ss_pred ccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeec
Confidence 5799999999999995432 3457899999999999999999876531 121 22222
Q ss_pred -------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEc
Q 008394 58 -------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEM 104 (567)
Q Consensus 58 -------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l 104 (567)
+.........+.+...+......+.+|++|.+.. +...+ .....+++
T Consensus 94 ~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 173 (355)
T TIGR02397 94 ASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDF 173 (355)
T ss_pred cccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEc
Confidence 2222222344555555554445666666665443 22222 12247889
Q ss_pred CCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHH
Q 008394 105 EALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
.++++++..+.+...+...+ -+++.+..+++.++|.|..+.....
T Consensus 174 ~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 174 KRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999988765433 3445788999999999976655543
No 66
>PF05729 NACHT: NACHT domain
Probab=98.33 E-value=4.4e-06 Score=74.42 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=33.7
Q ss_pred CCCceEEEEeCChhh---hhccCcccEEEcCCCCHHHHHHHHHHhh
Q 008394 78 TPVCRIIITTRNKQV---LRNWGVRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 78 ~~~~~ilvTtR~~~~---~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
.++.+++||+|.... .........+++++|++++..+++++..
T Consensus 118 ~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 118 PPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 468999999998766 2233344589999999999999998754
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=1.2e-07 Score=97.73 Aligned_cols=220 Identities=19% Similarity=0.099 Sum_probs=146.0
Q ss_pred cccCCCeeEEEEeeCCCCCccccccccccccccC-ccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCccc
Q 008394 310 DESRINSRVTMIRKNNSGYKCRDNLYNSLENKCK-VSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIE 388 (567)
Q Consensus 310 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~ 388 (567)
...+.++..|++..|.+.. +.. + .++.+|++|++++|.++.+.....+..|+.|++++|.|.
T Consensus 91 l~~~~~l~~l~l~~n~i~~------------i~~~l-----~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK------------IENLL-----SSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccccceeeeeccccchhh------------cccch-----hhhhcchheeccccccccccchhhccchhhheeccCcch
Confidence 5777788888887764211 112 2 245599999999999998888888888999999999888
Q ss_pred ccchhhhhhccCCcEEecccCccccccCCCCCC--CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcC
Q 008394 389 QLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTL--IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRL 466 (567)
Q Consensus 389 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 466 (567)
++...- .+..|+.+++++|+... ... ...+++++.+.+.+|.+ ..+ ..+..+..+..+++..|.....-
T Consensus 154 ~~~~~~--~l~~L~~l~l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i-~~i-~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 154 DISGLE--SLKSLKLLDLSYNRIVD-----IENDELSELISLEELDLGGNSI-REI-EGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred hccCCc--cchhhhcccCCcchhhh-----hhhhhhhhccchHHHhccCCch-hcc-cchHHHHHHHHhhcccccceecc
Confidence 875433 38888999999887543 122 36788888888888873 333 22444555555566665433322
Q ss_pred CccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCc---ccCcc-cC
Q 008394 467 PEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ---RLPEC-LG 540 (567)
Q Consensus 467 ~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~~p~~-l~ 540 (567)
+..... +|+.+++++|++..++..+..+.++..|++.+|+....- .+...+.+..+....+.... ..... ..
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITS 302 (414)
T ss_pred CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccc
Confidence 222222 388999999988888777888888888888877643321 24455566666666655441 12222 45
Q ss_pred CCCCcceeccccccccc
Q 008394 541 QLSSLGTLLLEKPILRE 557 (567)
Q Consensus 541 ~l~~L~~L~l~~~~l~~ 557 (567)
..+.+..+.+..|.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccCcccc
Confidence 67778888888887655
No 68
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=1.3e-05 Score=75.51 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=87.7
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-cC-------------------CceEEEEcCccccHHH
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-DF-------------------EGSCFLENVREESQDQ 66 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~f-------------------~~~~~~~~~~~~~~~~ 66 (567)
.+..+.++.. .....+.+.|+|.+|+|||+||..+++.... .. ...+.++++.......
T Consensus 28 ~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~liiDdi~~l~~~~ 106 (227)
T PRK08903 28 LVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAELYAVDDVERLDDAQ 106 (227)
T ss_pred HHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCCEEEEeChhhcCchH
Confidence 3444555543 2233458999999999999999999876411 11 1234566665443334
Q ss_pred HHHHHhhcCCC-CCCc-eEEEEeCChhhhhc--------cCcccEEEcCCCCHHHHHHHHHHhhcc--CCCChHHHHHHH
Q 008394 67 EESLIESLDWL-TPVC-RIIITTRNKQVLRN--------WGVRKIYEMEALEYHHALELFSRHAFK--QNHPDELSSKAV 134 (567)
Q Consensus 67 ~~~l~~~~~~~-~~~~-~ilvTtR~~~~~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~~i~ 134 (567)
.+.+...+... ..+. .+|+|++....... +.....++++++++++-.+++.+.+.. ..-+++..+.++
T Consensus 107 ~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~ 186 (227)
T PRK08903 107 QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL 186 (227)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444433221 2333 36666664332221 111357899999999888888765432 234455788888
Q ss_pred HHcCCCchHHHHHHHHh
Q 008394 135 KYAQGVPLALKVLGCFL 151 (567)
Q Consensus 135 ~~c~glPLai~~~~~~l 151 (567)
+.+.|.+..+..+...+
T Consensus 187 ~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 187 THFRRDMPSLMALLDAL 203 (227)
T ss_pred HhccCCHHHHHHHHHHH
Confidence 88999998877776655
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=1e-05 Score=80.29 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=95.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh-ccC-----------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS-SDF----------------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~f----------------------------- 50 (567)
++|.++.++.|.+++.. ++.+.+.++|++|+||||+|..+++.+. ..|
T Consensus 15 ~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~ 92 (319)
T PLN03025 15 IVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKK 92 (319)
T ss_pred hcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhcc
Confidence 57888889999888743 4455688999999999999999876541 111
Q ss_pred -------CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhccC-cccEEEcCCCCHHHHHHHHHHhhc
Q 008394 51 -------EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNWG-VRKIYEMEALEYHHALELFSRHAF 121 (567)
Q Consensus 51 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~ 121 (567)
..++++|++........+.|...+......+++++++.... +...+. ....++++++++++..+.+...+.
T Consensus 93 ~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 93 VTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred ccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHH
Confidence 12444555555555555666555554456677777665432 211111 124789999999999999998875
Q ss_pred cCC--CChHHHHHHHHHcCCCchHHH
Q 008394 122 KQN--HPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 122 ~~~--~~~~~~~~i~~~c~glPLai~ 145 (567)
..+ -+++..+.+++.++|..-.+.
T Consensus 173 ~egi~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 433 345578899999998764433
No 70
>PRK04195 replication factor C large subunit; Provisional
Probab=98.31 E-value=3e-05 Score=81.49 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=110.6
Q ss_pred CCCchHHHHHHHHHhcccC--CCeEEEEEEcCCCChHHHHHHHHHHHHh----------------------------ccC
Q 008394 1 MVGVESIVEEIESLLAVES--KDVYCLGIWGIGGIGKTTIARAIFDKIS----------------------------SDF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~--~~~~~i~I~G~gGvGKTtLa~~~~~~~~----------------------------~~f 50 (567)
++|.++.++++.+|+.... ...+.+.|+|++|+||||+|..+++.+. .-|
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~ 95 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLF 95 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCccc
Confidence 5899999999999996522 2257899999999999999999977431 011
Q ss_pred ---CceEEEEcCccccH----HHHHHHHhhcCCCCCCceEEEEeCChh-hhh-cc-CcccEEEcCCCCHHHHHHHHHHhh
Q 008394 51 ---EGSCFLENVREESQ----DQEESLIESLDWLTPVCRIIITTRNKQ-VLR-NW-GVRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 51 ---~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~-~~-~~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
..+++++++..... ...+.+...+. ..+..+|+|+.+.. ... .+ .....+++++++.++....+.+.+
T Consensus 96 ~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 96 GARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHH
Confidence 22456666554432 33455544443 23455666665432 111 11 123578999999999999998877
Q ss_pred ccC--CCChHHHHHHHHHcCCCchHHHHHHHHhcc-C---CHHHHHHHHHHHhhcCchhHHHHHHHHHh
Q 008394 121 FKQ--NHPDELSSKAVKYAQGVPLALKVLGCFLYK-M---EKEVWDSAINKLQRIHHPSILQILKISYD 183 (567)
Q Consensus 121 ~~~--~~~~~~~~~i~~~c~glPLai~~~~~~l~~-~---~~~~w~~~~~~l~~~~~~~l~~~l~~s~~ 183 (567)
... ..+++....|++.++|..-.+......+.. . +.+....+ ........++.++..-+.
T Consensus 174 ~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~---~~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 174 RKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL---GRRDREESIFDALDAVFK 239 (482)
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh---hcCCCCCCHHHHHHHHHC
Confidence 433 234558899999999977666544433332 1 33333222 113344566777766655
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=4.8e-06 Score=77.83 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=82.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc---------------CCceEEEEcCccccHHHHHHHHhhcCC-CCCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD---------------FEGSCFLENVREESQDQEESLIESLDW-LTPVCRIIIT 86 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ilvT 86 (567)
+.+.|+|++|+|||+|++.+++..+.. ....+.+|+++....+ -+.+...++. ...|..+|+|
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~-~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFD-ETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCC-HHHHHHHHHHHHhCCCeEEEE
Confidence 579999999999999999988642211 1234556766543211 1223333322 1346788998
Q ss_pred eCChh---------hhhccCcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHHHH
Q 008394 87 TRNKQ---------VLRNWGVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 87 tR~~~---------~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
++.+. ....+....+++++++++++-.+++.+++... .-++++..-|++.+.|..-++..+-.
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 87432 22223444689999999999999999988543 34556888888888887766654333
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=2.6e-06 Score=84.66 Aligned_cols=132 Identities=23% Similarity=0.342 Sum_probs=78.3
Q ss_pred CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCc
Q 008394 374 AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLT 453 (567)
Q Consensus 374 ~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 453 (567)
++++..|++++|.++.+|. --.+|++|.+++|..+. ..+. .+ .++|++|++++|..+..+|+. |+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLt-sLP~--~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLT-TLPG--SI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred hcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcc-cCCc--hh--hhhhhheEccCcccccccccc------cc
Confidence 4678888888888888872 23468888888877654 3322 12 247888888888556666653 55
Q ss_pred EEEcCCCC--CCCcCCccccCCCceeeccCccCc---ccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccC
Q 008394 454 TLDLSGCP--KLKRLPEISSSNTSCLFLSGTAIE---ELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSG 528 (567)
Q Consensus 454 ~L~Ls~~~--~~~~~~~~~~~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 528 (567)
.|+++.+. .+..+| .+|+.|.+.++.-. .+|.. -.++|++|++++|... .+|..+. .+|+.|.++.
T Consensus 116 ~L~L~~n~~~~L~~LP----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSIKNVP----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCcccccCc----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 56665432 222332 35666666432211 11110 1157888888887744 3444333 5888888876
Q ss_pred C
Q 008394 529 C 529 (567)
Q Consensus 529 ~ 529 (567)
|
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.27 E-value=9.7e-06 Score=82.08 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=88.1
Q ss_pred CCCchHHHHHHHHHhccc--C---------CCeEEEEEEcCCCChHHHHHHHHHHHHhcc--------------------
Q 008394 1 MVGVESIVEEIESLLAVE--S---------KDVYCLGIWGIGGIGKTTIARAIFDKISSD-------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--~---------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-------------------- 49 (567)
+.|+++.+++|.+.+... . ...+-+.|+|++|+|||++|+.+++.....
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~ 203 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARL 203 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHH
Confidence 468999999999877421 1 224569999999999999999997643222
Q ss_pred -----------CCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----C
Q 008394 50 -----------FEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 50 -----------f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
-++++++|++..... ..+..+...+... ..+..||.||+....... + .
T Consensus 204 i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~gr 283 (364)
T TIGR01242 204 VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGR 283 (364)
T ss_pred HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCccc
Confidence 134566665443211 1222333222211 235677888775432211 1 2
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.+..+.++..+.++..++|..++.....+.+ ....+++.+.|..
T Consensus 284 fd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 284 FDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 2457889999999999999988755443322 3567888887764
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=2.4e-06 Score=84.98 Aligned_cols=131 Identities=27% Similarity=0.489 Sum_probs=89.9
Q ss_pred hccCCcEEecccCccccccCCCCCCCCCCc-CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCc
Q 008394 397 HRGKLNQIIHATCKMLIAKTPNPTLIPHLN-KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTS 475 (567)
Q Consensus 397 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~ 475 (567)
.+.+++.|++++|.. . .+| .+| +|+.|.+++|..+..+|..+ .++|++|++++|..+..+| .+|+
T Consensus 50 ~~~~l~~L~Is~c~L-~-sLP------~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDI-E-SLP------VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCC-c-ccC------CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----cccc
Confidence 579999999999943 2 232 343 69999999998888888655 4689999999997666554 4688
Q ss_pred eeeccCccC---cccChhhhccCCCcEEecCCCccC--ccCcccccCC-CCCcEEeccCCCCCcccCcccCCCCCcceec
Q 008394 476 CLFLSGTAI---EELPSSIELLLRLEYLDLSDCKRL--KSLPSSLCKL-KSLEILDLSGCSNLQRLPECLGQLSSLGTLL 549 (567)
Q Consensus 476 ~L~l~~~~i---~~lp~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 549 (567)
.|+++++.. ..+|+. |+.|.+.++... ..+|. .+ ++|+.|++++|.... +|..+. .+|+.|.
T Consensus 116 ~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccccCcch------Hhheecccccccccccccc---ccCCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 888887664 455543 556666543311 11221 23 589999999988653 444332 4788888
Q ss_pred cccc
Q 008394 550 LEKP 553 (567)
Q Consensus 550 l~~~ 553 (567)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 8765
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=0.00012 Score=74.92 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=92.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF------------------------------ 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------------------------------ 50 (567)
++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-
T Consensus 20 vVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa 98 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA 98 (484)
T ss_pred HhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh
Confidence 4788999999999985432 234689999999999999999977542210
Q ss_pred -----------------------CceEEEEcCccccHHHHHHHHhhcCCCCCCceEE-EEeCChhhhhccC-cccEEEcC
Q 008394 51 -----------------------EGSCFLENVREESQDQEESLIESLDWLTPVCRII-ITTRNKQVLRNWG-VRKIYEME 105 (567)
Q Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~il-vTtR~~~~~~~~~-~~~~~~l~ 105 (567)
..++++|.++......++.|+..+.--.....+| .||....+..... ....+.+.
T Consensus 99 s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~ 178 (484)
T PRK14956 99 SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFK 178 (484)
T ss_pred hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeec
Confidence 0123334444444455666655554333344444 4444444433322 22469999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai 144 (567)
+++.++..+.+.+.+...+ ..++....|++.++|.+.-.
T Consensus 179 ~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 179 KVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHH
Confidence 9999999999988765432 34557899999999988443
No 76
>PRK06620 hypothetical protein; Validated
Probab=98.23 E-value=3.5e-05 Score=71.34 Aligned_cols=121 Identities=9% Similarity=0.017 Sum_probs=78.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc-------------cCCceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS-------------DFEGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRN 89 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~-------------~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~ 89 (567)
+.+.|+|++|+|||+|++.+++.... .....+.+|+++......+-.+...+. ..|..+|+|++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~ 122 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSD 122 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCC
Confidence 57999999999999999988764211 112356788887543222223322222 356789999875
Q ss_pred hhhhhc-------cCcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHH
Q 008394 90 KQVLRN-------WGVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 90 ~~~~~~-------~~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~ 145 (567)
+...-. +...-+++++++++++-.+++.+.+... .-++++..-|++.+.|---.+.
T Consensus 123 ~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 123 KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHH
Confidence 533211 1223479999999999999998877532 3455678888888876544333
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=6.9e-05 Score=78.33 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=92.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--cC------------------CceEEEE---
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS--DF------------------EGSCFLE--- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--~f------------------~~~~~~~--- 57 (567)
++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+.. .+ +.+.+++
T Consensus 16 vvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~ 94 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS 94 (504)
T ss_pred hcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc
Confidence 5788999999999885432 2356799999999999999999887531 11 1122222
Q ss_pred -----------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEEcCC
Q 008394 58 -----------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYEMEA 106 (567)
Q Consensus 58 -----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~l~~ 106 (567)
+........++.|...+........+|++|.. ..+...+ .....+++.+
T Consensus 95 ~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ 174 (504)
T PRK14963 95 NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRR 174 (504)
T ss_pred cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecC
Confidence 22222223444454444433344555555543 3332222 2235799999
Q ss_pred CCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCCchHHH
Q 008394 107 LEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 107 L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~glPLai~ 145 (567)
++.++..+.+.+.+...+. .++....|++.++|.+--+.
T Consensus 175 ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 175 LTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999987754432 44578899999999886543
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=2e-06 Score=78.25 Aligned_cols=49 Identities=33% Similarity=0.502 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHhcc-cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 1 MVGVESIVEEIESLLAV-ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
||||+++++++...+.. .....+.+.|+|++|+|||+|++++++.+...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 79999999999999942 33556899999999999999999999988766
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.8e-05 Score=81.76 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=94.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEE--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLE-- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~-- 57 (567)
+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+.+.+.. .+..++.++
T Consensus 17 VIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAA 95 (702)
T PRK14960 17 LVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAA 95 (702)
T ss_pred hcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccc
Confidence 5899999999999996442 2467899999999999999999775421 122233333
Q ss_pred ------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhc-cCcccEEEcC
Q 008394 58 ------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRN-WGVRKIYEME 105 (567)
Q Consensus 58 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~-~~~~~~~~l~ 105 (567)
.+........+.|...+.....+.++|++|.+.. +... ......++++
T Consensus 96 s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFk 175 (702)
T PRK14960 96 SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLR 175 (702)
T ss_pred ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeecc
Confidence 2222222344444444443345567777776542 2211 1223579999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~ 145 (567)
+++.++..+.+.+.+...+ ...+....|++.++|.+..+.
T Consensus 176 pLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999988775433 344478889999999875444
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.7e-08 Score=90.36 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=71.4
Q ss_pred CeeEEeeCCCCCCC--CCCCC-CCCCceEEEccCCcccc-cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 354 EVKYLHWHGYPLKS--MPSNI-CAEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 354 ~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
.|++++++...++. +.... ...+|+.|.+.++++.+ +...+. +-.+|+.|+|+.|.+++ .......+..++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccc-hhHHHHHHHhhhhHh
Confidence 45566655544331 11111 13445555555555554 222333 45555555555555443 221112233455555
Q ss_pred EEecCCCccCCccC-CcccC-CCCCcEEEcCCCCCCCcCCc-----cccCCCceeeccCccC-c-ccChhhhccCCCcEE
Q 008394 430 ILNLRGSKSLKSLP-AGIFN-LEFLTTLDLSGCPKLKRLPE-----ISSSNTSCLFLSGTAI-E-ELPSSIELLLRLEYL 500 (567)
Q Consensus 430 ~L~l~~~~~~~~~p-~~l~~-l~~L~~L~Ls~~~~~~~~~~-----~~~~~L~~L~l~~~~i-~-~lp~~~~~l~~L~~L 500 (567)
.|+++-|....+.- ..+.+ -++|..|+|+|+...-.... .-+++|.+|+|+.+.. + .....+.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 55555554322211 11111 23455555555432111000 0112555555555321 1 222234455555555
Q ss_pred ecCCCccCccCcc---cccCCCCCcEEeccCC
Q 008394 501 DLSDCKRLKSLPS---SLCKLKSLEILDLSGC 529 (567)
Q Consensus 501 ~l~~~~~~~~~p~---~~~~l~~L~~L~l~~~ 529 (567)
.++.|..+ +|. .+...|+|.+|++.+|
T Consensus 344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 55555422 221 2444555555555554
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=0.00012 Score=76.00 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=98.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------CCc-------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD---------------------FEG------- 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~---------------------f~~------- 52 (567)
+||.+..++.|.+.+..+. -.+.+.++|++|+||||+|+.+++.+... +..
T Consensus 16 ivGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa 94 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA 94 (472)
T ss_pred ccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc
Confidence 5899988888888885332 23568999999999999999998764210 111
Q ss_pred -------------------------eEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEEcC
Q 008394 53 -------------------------SCFLENVREESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYEME 105 (567)
Q Consensus 53 -------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~l~ 105 (567)
++++|+++.......+.|...+........+|++|.+ ..+...+ .....+++.
T Consensus 95 ~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~ 174 (472)
T PRK14962 95 SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFR 174 (472)
T ss_pred ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEEC
Confidence 2223333333334455555555443344444444443 3333322 223578999
Q ss_pred CCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCC-CchHHHHHHHHhc--c--CCHHHHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQG-VPLALKVLGCFLY--K--MEKEVWDSAI 163 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~g-lPLai~~~~~~l~--~--~~~~~w~~~~ 163 (567)
+++.++....+.+.+... .-+++....|++.++| ++.|+..+-.+.. + .+.+....++
T Consensus 175 ~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 175 NISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999998877433 3344577889988865 5666666655332 1 2555554443
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=3.6e-05 Score=72.66 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=86.4
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC------------------------ceEEEEcCccc
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE------------------------GSCFLENVREE 62 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~------------------------~~~~~~~~~~~ 62 (567)
.+..+.++... ...+.+.|+|++|+|||+|+..+++.+.+.-. ..+.+|+++..
T Consensus 32 a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~ 109 (235)
T PRK08084 32 LLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECI 109 (235)
T ss_pred HHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhh
Confidence 44555555532 23358999999999999999998876432111 13456666544
Q ss_pred cH-HHHH-HHHhhcCCC-CCC-ceEEEEeCChhhh---------hccCcccEEEcCCCCHHHHHHHHHHhhccC--CCCh
Q 008394 63 SQ-DQEE-SLIESLDWL-TPV-CRIIITTRNKQVL---------RNWGVRKIYEMEALEYHHALELFSRHAFKQ--NHPD 127 (567)
Q Consensus 63 ~~-~~~~-~l~~~~~~~-~~~-~~ilvTtR~~~~~---------~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~ 127 (567)
.. ..|+ .+...++.. ..| .++|+||+.+... ..+....+++++++++++-.+++.+++... .-++
T Consensus 110 ~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~ 189 (235)
T PRK08084 110 AGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPE 189 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 32 2222 222222211 233 4789998865322 122334589999999999999998866433 3455
Q ss_pred HHHHHHHHHcCCCchHHHHHHH
Q 008394 128 ELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 128 ~~~~~i~~~c~glPLai~~~~~ 149 (567)
++..-+++.+.|..-++..+-.
T Consensus 190 ~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 190 DVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHHHhhcCCHHHHHHHHH
Confidence 6888888888876655444433
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=0.00013 Score=73.13 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=89.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh-cc------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS-SD------------------------------ 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~------------------------------ 49 (567)
++|.++.++.+.+.+..+ .-...+.++|+.|+||+|+|..+.+.+- +.
T Consensus 21 iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~ 99 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGA 99 (365)
T ss_pred ccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccC
Confidence 579999999999998543 2234699999999999999999987641 11
Q ss_pred CCceEEEEcC---c------cccHHHH--------------------------------HHHHhhcCCCCCCceEEEEeC
Q 008394 50 FEGSCFLENV---R------EESQDQE--------------------------------ESLIESLDWLTPVCRIIITTR 88 (567)
Q Consensus 50 f~~~~~~~~~---~------~~~~~~~--------------------------------~~l~~~~~~~~~~~~ilvTtR 88 (567)
.+...++.-. . ....++. ..|...+.-...++.+|++|.
T Consensus 100 HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 100 HGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred CCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 1122233210 0 0111222 222222222234566667666
Q ss_pred Chh-hhhcc-CcccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 89 NKQ-VLRNW-GVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 89 ~~~-~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
... +.... .....+.+.+++.++..+++.+.... .+.+....+++.++|.|+....+.
T Consensus 180 ~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 180 APARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--LPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 653 32222 22357999999999999999886432 222223688999999998665554
No 84
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=0.00012 Score=79.67 Aligned_cols=145 Identities=15% Similarity=0.191 Sum_probs=92.1
Q ss_pred CCCchHHHHHHHHHhcccCCCe-EEEEEEcCCCChHHHHHHHHHHHHhcc---------------------CCceEEEEc
Q 008394 1 MVGVESIVEEIESLLAVESKDV-YCLGIWGIGGIGKTTIARAIFDKISSD---------------------FEGSCFLEN 58 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~-~~i~I~G~gGvGKTtLa~~~~~~~~~~---------------------f~~~~~~~~ 58 (567)
+||.+..++.|.+++.. +++ ..+.++|+.|+||||+|+.+++.+... |..+++++.
T Consensus 18 IIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 18 MVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred hcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 58999999999999853 344 456899999999999999999875321 222233332
Q ss_pred C--------------------------------ccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEEc
Q 008394 59 V--------------------------------REESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYEM 104 (567)
Q Consensus 59 ~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~l 104 (567)
. ........+.|+..+.--....++|++|.+ ..+...+ .....+++
T Consensus 96 as~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~f 175 (944)
T PRK14949 96 ASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNL 175 (944)
T ss_pred ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeC
Confidence 2 111123344444444333344555555444 3333222 12257999
Q ss_pred CCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHH
Q 008394 105 EALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
++++.++..+.+.+.+... ...++..+.|++.++|.|--+..+
T Consensus 176 kpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 176 KSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998876432 233447889999999988655444
No 85
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00011 Score=75.25 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=93.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------------------------------cC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------------------------------DF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------------------------------~f 50 (567)
++|.+..++.|.+++..++ -...+.++|+.|+||||+|..+.+.+.. ++
T Consensus 18 iiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~ 96 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSL 96 (397)
T ss_pred ccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCC
Confidence 5788999999999885332 2345889999999999999999887522 11
Q ss_pred Cc-------------------------------eEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhccC-
Q 008394 51 EG-------------------------------SCFLENVREESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNWG- 97 (567)
Q Consensus 51 ~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~~- 97 (567)
+. ++++++........++.+...+....+.+.+|++| +...+.....
T Consensus 97 n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~s 176 (397)
T PRK14955 97 NISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS 176 (397)
T ss_pred CeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHH
Confidence 11 11122222222244555655555445566665555 4333332221
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHH
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~ 146 (567)
....++++++++++..+.+...+... .-.++.++.+++.++|.+--+..
T Consensus 177 R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 177 RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 12478999999999999888876433 24455789999999998854443
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=5.7e-05 Score=78.59 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=95.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-------------------------C----
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-------------------------E---- 51 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-------------------------~---- 51 (567)
++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- +
T Consensus 23 liGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~e 101 (507)
T PRK06645 23 LQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIE 101 (507)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEE
Confidence 478888899888877543 2346899999999999999999988652110 0
Q ss_pred ----------------------------ceEEEEcCccccHHHHHHHHhhcCCCCCCceEEE-EeCChhhhhccC-cccE
Q 008394 52 ----------------------------GSCFLENVREESQDQEESLIESLDWLTPVCRIII-TTRNKQVLRNWG-VRKI 101 (567)
Q Consensus 52 ----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilv-TtR~~~~~~~~~-~~~~ 101 (567)
.++++++++......++.|...+......+.+|+ ||+...+...+. ....
T Consensus 102 idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~ 181 (507)
T PRK06645 102 IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQR 181 (507)
T ss_pred eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceE
Confidence 1223344444444566666666654445556554 555444444332 2247
Q ss_pred EEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai 144 (567)
+++++++.++..+.+.+.+...+ ..++..+.|++.++|.+--+
T Consensus 182 ~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 182 YDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 89999999999999998885443 23446788999999987444
No 87
>PTZ00202 tuzin; Provisional
Probab=98.15 E-value=0.00012 Score=72.71 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=44.4
Q ss_pred CCCchHHHHHHHHHhcccC-CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCc
Q 008394 1 MVGVESIVEEIESLLAVES-KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVR 60 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~ 60 (567)
|+||++++++|...|...+ +..+++.|.|++|+|||||++.+..... ...++.++.
T Consensus 264 FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr 320 (550)
T PTZ00202 264 FVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR 320 (550)
T ss_pred CCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC
Confidence 7999999999999996533 3456999999999999999999997653 225555555
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.15 E-value=3.3e-05 Score=78.62 Aligned_cols=141 Identities=18% Similarity=0.284 Sum_probs=86.3
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc--------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-------------------- 49 (567)
+.|+++.+++|.+.+.. +-...+-|.++|++|+|||++|+.+++.....
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~ 212 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARL 212 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHH
Confidence 36899999999987632 11234579999999999999999998643211
Q ss_pred -----------CCceEEEEcCcccc-----------HHH---HHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----C
Q 008394 50 -----------FEGSCFLENVREES-----------QDQ---EESLIESLDWL--TPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 50 -----------f~~~~~~~~~~~~~-----------~~~---~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
-+++++++++.... ... +..+....... ..+..||.||........ + .
T Consensus 213 i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgR 292 (389)
T PRK03992 213 VRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGR 292 (389)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCcc
Confidence 23567777665431 111 22222222211 234567777765433221 1 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.+..+.+++.+.++-.++|+.+..+...+.. ....+++.+.|.-
T Consensus 293 fd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~s 337 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGAS 337 (389)
T ss_pred CceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCC
Confidence 2357899999999999999987754332221 3466777776643
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=7.9e-05 Score=75.34 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred CCCchHHHHHHHHHhcccCC--------CeEEEEEEcCCCChHHHHHHHHHHHHhcc--------------------CCc
Q 008394 1 MVGVESIVEEIESLLAVESK--------DVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------FEG 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~--------~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------f~~ 52 (567)
++|-+..++.|.+++....+ -.+.+.++|++|+|||++|..+.+.+-.. .+.
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD 86 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD 86 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 57999999999999965431 34679999999999999999997754211 122
Q ss_pred eEEE---------------------------------EcCccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-C
Q 008394 53 SCFL---------------------------------ENVREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-G 97 (567)
Q Consensus 53 ~~~~---------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~ 97 (567)
..++ ++.........+.|.+.+.-...+..+|++|.+. .+.... .
T Consensus 87 ~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrS 166 (394)
T PRK07940 87 VRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRS 166 (394)
T ss_pred EEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHh
Confidence 2222 2222222233344444444334566666666654 333222 2
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
....+.+++++.++..+.+.+..+ .+.+.++.+++.++|.|.....++
T Consensus 167 Rc~~i~f~~~~~~~i~~~L~~~~~---~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 167 RCRHVALRTPSVEAVAEVLVRRDG---VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred hCeEEECCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 235799999999999998875432 334467889999999997554443
No 90
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=9.1e-05 Score=69.80 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=76.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEE------------------------EEcCccccH-HHH-HHHHhhcCC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCF------------------------LENVREESQ-DQE-ESLIESLDW 76 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~------------------------~~~~~~~~~-~~~-~~l~~~~~~ 76 (567)
..+.|+|.+|+|||.|+..+++...+....+.+ +|++..... ..+ +.+...++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 469999999999999999998875443333333 333332211 111 122222211
Q ss_pred -CCCCceEEEEeCChhhhh---------ccCcccEEEcCCCCHHHHHHHHHHhhcc--CCCChHHHHHHHHHcCCCchHH
Q 008394 77 -LTPVCRIIITTRNKQVLR---------NWGVRKIYEMEALEYHHALELFSRHAFK--QNHPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 77 -~~~~~~ilvTtR~~~~~~---------~~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~~i~~~c~glPLai 144 (567)
...|..||+|++..--.. .+.....+++++++.++-.+++.+++.. -.-+++....+++.++|-.-.+
T Consensus 122 ~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 122 ARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 124567999988542211 1122347899999999999999987743 3345557888888888765444
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.13 E-value=3.5e-05 Score=74.12 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=75.3
Q ss_pred CCCchHHHHHHHHHhcc-------------cCCCeEEEEEEcCCCChHHHHHHHHHHHHh--------------------
Q 008394 1 MVGVESIVEEIESLLAV-------------ESKDVYCLGIWGIGGIGKTTIARAIFDKIS-------------------- 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-------------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-------------------- 47 (567)
++|.++.+++|.++... ..+....+.++|++|+||||+|+.+++.+.
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~ 87 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG 87 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh
Confidence 57888888877654321 113456789999999999999999975421
Q ss_pred ---------------ccCCceEEEEcCcccc--------HHHHHHHHhhcCCCCCCceEEEEeCChhhhh------cc--
Q 008394 48 ---------------SDFEGSCFLENVREES--------QDQEESLIESLDWLTPVCRIIITTRNKQVLR------NW-- 96 (567)
Q Consensus 48 ---------------~~f~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~------~~-- 96 (567)
....+++++|++.... .+..+.+............+++++...+... .+
T Consensus 88 ~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~s 167 (261)
T TIGR02881 88 EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRS 167 (261)
T ss_pred hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHh
Confidence 1124566777665421 3455556555543333334555554332211 11
Q ss_pred CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 97 GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 97 ~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
.....+.+++++.++-.+++.+.+..
T Consensus 168 Rf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 168 RFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ccceEEEECCCCHHHHHHHHHHHHHH
Confidence 11246889999999999999988754
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.13 E-value=8.7e-05 Score=67.62 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEE-------------
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCF------------- 55 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~------------- 55 (567)
.+.+.+..+ .-...+.++|+.|+||||+|+.+.+.+.. .++...+
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 455556322 22367999999999999999999877532 1222222
Q ss_pred --------------------EEcCccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEcCCCCHHHHH
Q 008394 56 --------------------LENVREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEMEALEYHHAL 113 (567)
Q Consensus 56 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l~~L~~~~~~ 113 (567)
++++........+.|...+......+.+|++|++. .+...+ .....+++.+++.++..
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 22333333355666666666656667777777654 222221 12358999999999999
Q ss_pred HHHHHhhccCCCChHHHHHHHHHcCCCchH
Q 008394 114 ELFSRHAFKQNHPDELSSKAVKYAQGVPLA 143 (567)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~i~~~c~glPLa 143 (567)
+.+.+. + -.++.++.+++.++|.|..
T Consensus 162 ~~l~~~-g---i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 162 QWLIRQ-G---ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHc-C---CCHHHHHHHHHHcCCCccc
Confidence 999887 2 3445789999999998853
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.12 E-value=0.00022 Score=67.08 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=95.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH--hccCCceEE-----------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI--SSDFEGSCF----------------------- 55 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~--~~~f~~~~~----------------------- 55 (567)
++|-+..+..|.+.+.. ...++...||++|.|||+-|..++.++ .+-|++++.
T Consensus 38 ~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl 115 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKL 115 (346)
T ss_pred hcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHH
Confidence 36778888888888854 567899999999999999999998764 233444442
Q ss_pred -------------------EEcCccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhccCc-ccEEEcCCCCHHHHHH
Q 008394 56 -------------------LENVREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNWGV-RKIYEMEALEYHHALE 114 (567)
Q Consensus 56 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~~~-~~~~~l~~L~~~~~~~ 114 (567)
+|+...-..+.|..|+.........++.+..+..- .+...+.. -..++.++|.+++...
T Consensus 116 ~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~ 195 (346)
T KOG0989|consen 116 TVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVD 195 (346)
T ss_pred hhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHH
Confidence 22222222377888888887766666655444433 33222211 1358899999999999
Q ss_pred HHHHhhccCCC--ChHHHHHHHHHcCCCc
Q 008394 115 LFSRHAFKQNH--PDELSSKAVKYAQGVP 141 (567)
Q Consensus 115 l~~~~~~~~~~--~~~~~~~i~~~c~glP 141 (567)
-++..+-+.+. ..+..+.|++.++|--
T Consensus 196 rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 196 RLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 99988865443 3447889999998854
No 94
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=7.2e-08 Score=99.25 Aligned_cols=125 Identities=19% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCc
Q 008394 374 AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLT 453 (567)
Q Consensus 374 ~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 453 (567)
...|.+.+.+.|.+..+...+. -++.|+.|||++|+... ...+..+++|++|||++|. +..+|.--..-.+|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~-----v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTK-----VDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQ 235 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhh-----hHHHHhcccccccccccch-hccccccchhhhhhe
Confidence 4556667777777777666665 67788888888886543 2345677788888888877 555654211234477
Q ss_pred EEEcCCCCCCCcCCccc-cCCCceeeccCccCcccC--hhhhccCCCcEEecCCCc
Q 008394 454 TLDLSGCPKLKRLPEIS-SSNTSCLFLSGTAIEELP--SSIELLLRLEYLDLSDCK 506 (567)
Q Consensus 454 ~L~Ls~~~~~~~~~~~~-~~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~ 506 (567)
.|.+++|. +..+.+.. ..+|..|+++.|-+.... ..++.+..|+.|+|.||+
T Consensus 236 ~L~lrnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeecccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77777753 23333222 236777777777666432 235667777777777776
No 95
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=3.1e-08 Score=101.90 Aligned_cols=177 Identities=27% Similarity=0.193 Sum_probs=86.5
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCCC-CCceEEEccCCcccccchhhh---------hhccCCcEEecccCccccccCCCCC
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNICA-EQLVFLEVPNSSIEQLWDGMK---------QHRGKLNQIIHATCKMLIAKTPNPT 420 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~~-~~L~~L~l~~n~i~~l~~~~~---------~~l~~L~~L~l~~~~~~~~~~~~~~ 420 (567)
.|.+||+|.+.||++.+......+ .+|+.|- ..|.+..+-..+. .....|...+.+.|+... .-.
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~----mD~ 181 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL----MDE 181 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh----HHH
Confidence 468999999999988775444332 2233332 2222222111111 012334455555554322 112
Q ss_pred CCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChh-hhccCCCcE
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSS-IELLLRLEY 499 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~ 499 (567)
++.-++.|+.|||++|++.. .. .+..+++|++|||++ |.+..+|.. ..++. |+.
T Consensus 182 SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsy----------------------N~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSY----------------------NCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred HHHHHHHhhhhccchhhhhh-hH-HHHhccccccccccc----------------------chhccccccchhhhh-hee
Confidence 34456677777777776333 22 466677777777777 444444422 22222 555
Q ss_pred EecCCCccCccCcccccCCCCCcEEeccCCCCCcc-cCcccCCCCCcceeccccccccccc
Q 008394 500 LDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQR-LPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 500 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
|++++|.+. .+ .++.++.+|+.||++.|-+.+. -...+..+..|+.|.|.+|.+-.-|
T Consensus 237 L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 237 LNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred eeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 555554422 22 1245555555555555443321 1122344555556666666554433
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=7.2e-05 Score=78.39 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=92.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEE--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLE-- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~-- 57 (567)
++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.. .|...++++
T Consensus 18 iiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa 96 (546)
T PRK14957 18 VAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA 96 (546)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 579999999999998543 23356889999999999999999875421 123333332
Q ss_pred ------------------------------cCccccHHHHHHHHhhcCCCCCCceEEE-EeCChhhhhcc-CcccEEEcC
Q 008394 58 ------------------------------NVREESQDQEESLIESLDWLTPVCRIII-TTRNKQVLRNW-GVRKIYEME 105 (567)
Q Consensus 58 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilv-TtR~~~~~~~~-~~~~~~~l~ 105 (567)
++........+.|...+.-....+.+|. ||....+.... .....+++.
T Consensus 97 s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~ 176 (546)
T PRK14957 97 SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLK 176 (546)
T ss_pred cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeC
Confidence 2222223445555555554444555554 44433333222 223579999
Q ss_pred CCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCch-HHHHH
Q 008394 106 ALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPL-ALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPL-ai~~~ 147 (567)
+++.++..+.+.+.+... ...++....|++.++|.+- |+..+
T Consensus 177 ~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 177 HISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999998888765432 2334467889999999774 44333
No 97
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.0002 Score=75.34 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------------------------cCCceE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS--------------------------DFEGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--------------------------~f~~~~ 54 (567)
+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.. .|...+
T Consensus 18 VIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi 96 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI 96 (700)
T ss_pred HcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce
Confidence 5899999999999995432 2346799999999999999999876532 122233
Q ss_pred EEEc--------------------------------CccccHHHHHHHHhhcCCCCCCceEEEE-eCChhhhhccC-ccc
Q 008394 55 FLEN--------------------------------VREESQDQEESLIESLDWLTPVCRIIIT-TRNKQVLRNWG-VRK 100 (567)
Q Consensus 55 ~~~~--------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ilvT-tR~~~~~~~~~-~~~ 100 (567)
.++. +........+.|++.+.--..+.++|++ |....+...+. .-.
T Consensus 97 EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 97 EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 3332 2222223444444444333345555544 44444433321 124
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHH
Q 008394 101 IYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~ 147 (567)
.+++++++.++..+.+.+.+...+ ..++..+.|++.++|.|.-...+
T Consensus 177 ~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 177 QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 799999999999999988764432 23346688999999998654443
No 98
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.2e-05 Score=72.70 Aligned_cols=164 Identities=18% Similarity=0.269 Sum_probs=100.4
Q ss_pred CchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-------------------------
Q 008394 3 GVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI------------------------- 46 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------- 46 (567)
|.++.+++|++...- +-+.++=|.+||++|.|||-||++|+++.
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVR 234 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVR 234 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHH
Confidence 688999999987742 11456789999999999999999998642
Q ss_pred ------hccCCceEEEEcCccccH--------------HHHHHHHhhcCCCCC--CceEEEEeCChhhhhcc-----Ccc
Q 008394 47 ------SSDFEGSCFLENVREESQ--------------DQEESLIESLDWLTP--VCRIIITTRNKQVLRNW-----GVR 99 (567)
Q Consensus 47 ------~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~--~~~ilvTtR~~~~~~~~-----~~~ 99 (567)
+.+=++++|+|.+..... ...-+|...+.-+++ .-|||..|.-.++.+.. .-+
T Consensus 235 elF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~D 314 (406)
T COG1222 235 ELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFD 314 (406)
T ss_pred HHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccc
Confidence 334578889886554332 333445555554443 34777777665554431 224
Q ss_pred cEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc----hHHHHHHHHhc--c----CCHHHHHHHHHHH
Q 008394 100 KIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP----LALKVLGCFLY--K----MEKEVWDSAINKL 166 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP----Lai~~~~~~l~--~----~~~~~w~~~~~~l 166 (567)
..++++.=+.+.-.++|+=++.+-.-..+ -.+.+++.|.|.- .||-+=|+.++ . .+.+....+.++.
T Consensus 315 RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 315 RKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred ceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 57787755555556666666543322222 3677888888765 44555555553 1 1455555555443
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00025 Score=75.61 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC--------------------------CceE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF--------------------------EGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f--------------------------~~~~ 54 (567)
++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.... ..++
T Consensus 26 liGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~ 104 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVL 104 (598)
T ss_pred hcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceE
Confidence 5899999999999996432 345799999999999999999988653211 1122
Q ss_pred EEE--------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhccC-ccc
Q 008394 55 FLE--------------------------------NVREESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNWG-VRK 100 (567)
Q Consensus 55 ~~~--------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~~-~~~ 100 (567)
+++ .+........+.|.+.+.-....+++|++| ....+...+. ...
T Consensus 105 e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq 184 (598)
T PRK09111 105 EMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQ 184 (598)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhhee
Confidence 322 111112233444444444334556665554 4333332321 224
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHH
Q 008394 101 IYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
.+++.+++.++..+.+.+.+...+ ..++..+.|++.++|.+.-+....
T Consensus 185 ~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 185 RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999998765433 344578899999999886554433
No 100
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.8e-06 Score=80.17 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=72.2
Q ss_pred CeeEEeeCCCCCCCCCCCC----CCCCceEEEccCCcccccch--hhhhhccCCcEEecccCccccccCCCCCCC-CCCc
Q 008394 354 EVKYLHWHGYPLKSMPSNI----CAEQLVFLEVPNSSIEQLWD--GMKQHRGKLNQIIHATCKMLIAKTPNPTLI-PHLN 426 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~n~i~~l~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~ 426 (567)
-++.+.+.++.+.+..... ....++.+|+.+|.|++-.+ .+..++|+|++|+|+.|+... ..... ....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLPLPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccCccccc
Confidence 3446677777776654422 35779999999999886332 233599999999999997533 22223 3567
Q ss_pred CCcEEecCCCccCC-ccCCcccCCCCCcEEEcCCCC
Q 008394 427 KLVILNLRGSKSLK-SLPAGIFNLEFLTTLDLSGCP 461 (567)
Q Consensus 427 ~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~Ls~~~ 461 (567)
+|++|-|.+..+.- .....+..+|.++.|.+|.|+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 89999998876432 233456678999999999884
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00033 Score=71.21 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=91.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------cCCc--------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS--------DFEG-------------------- 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--------~f~~-------------------- 52 (567)
++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|..+.+.+.. .|..
T Consensus 19 iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~ 97 (367)
T PRK14970 19 VVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLI 97 (367)
T ss_pred cCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHH
Confidence 579999999999999543 23458999999999999999999876532 1221
Q ss_pred -------------eEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeC-Chhhhhcc-CcccEEEcCCCCHHHHHHHHH
Q 008394 53 -------------SCFLENVREESQDQEESLIESLDWLTPVCRIIITTR-NKQVLRNW-GVRKIYEMEALEYHHALELFS 117 (567)
Q Consensus 53 -------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR-~~~~~~~~-~~~~~~~l~~L~~~~~~~l~~ 117 (567)
+++++++.......++.+...+......+.+|++|. ........ .....++++++++++....+.
T Consensus 98 ~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 98 DQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred HHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 122222222222334444443333234455555553 22222221 122478999999999999998
Q ss_pred HhhccCC--CChHHHHHHHHHcCCCchHHHH
Q 008394 118 RHAFKQN--HPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 118 ~~~~~~~--~~~~~~~~i~~~c~glPLai~~ 146 (567)
+.+...+ -+++.+..+++.++|.+-.+..
T Consensus 178 ~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 178 GIAVKEGIKFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 8775444 3455788999999997764443
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.0002 Score=71.37 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=89.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc----C-----------------------Cce
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD----F-----------------------EGS 53 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~----f-----------------------~~~ 53 (567)
++|.++..+.+...+..+. -...+.|+|+.|+||||+|..+.+.+-.+ + +..
T Consensus 25 l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl 103 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNL 103 (351)
T ss_pred ccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCE
Confidence 5799999999999995442 33469999999999999999998875321 1 111
Q ss_pred EEEEcC---c------cccHHH--------------------------------HHHHHhhcCCCCCCceEEEEe-CChh
Q 008394 54 CFLENV---R------EESQDQ--------------------------------EESLIESLDWLTPVCRIIITT-RNKQ 91 (567)
Q Consensus 54 ~~~~~~---~------~~~~~~--------------------------------~~~l~~~~~~~~~~~~ilvTt-R~~~ 91 (567)
.++... . ....++ .+.|...+.-...+..+|++| +...
T Consensus 104 ~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~ 183 (351)
T PRK09112 104 LHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGR 183 (351)
T ss_pred EEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhh
Confidence 222211 0 011122 222222222222334444444 4333
Q ss_pred hhhcc-CcccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 92 VLRNW-GVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 92 ~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
+.... ..-..+++.+++.++..+++.+........++....+++.++|.|.....+.
T Consensus 184 llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 184 LLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32222 1124799999999999999998543322234467889999999998665544
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00013 Score=76.68 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=89.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~ 59 (567)
++|++..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.+.. ..+...+++..
T Consensus 18 IIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa 96 (605)
T PRK05896 18 IIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA 96 (605)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc
Confidence 589999999999988543 23467999999999999999999876421 01223344432
Q ss_pred ccccH--------------------------------HHHHHHHhhcCCCCCCceEEEEe-CChhhhhcc-CcccEEEcC
Q 008394 60 REESQ--------------------------------DQEESLIESLDWLTPVCRIIITT-RNKQVLRNW-GVRKIYEME 105 (567)
Q Consensus 60 ~~~~~--------------------------------~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~-~~~~~~~l~ 105 (567)
..... ..++.|...+.-......+|++| ....+.... .....+++.
T Consensus 97 s~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~ 176 (605)
T PRK05896 97 SNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFK 176 (605)
T ss_pred cccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccC
Confidence 21111 22333333333223344555444 333332221 223478999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~ 145 (567)
+++.++....+...+...+ .+++.++.+++.++|.+--+.
T Consensus 177 ~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~Al 218 (605)
T PRK05896 177 KLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGL 218 (605)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 9999999999998765433 445578899999999765333
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=75.32 Aligned_cols=144 Identities=19% Similarity=0.234 Sum_probs=94.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh---------------------ccCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS---------------------SDFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---------------------~~f~~~~~~~~~ 59 (567)
+||.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+.+.+. ..+..++.++..
T Consensus 15 liGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaa 93 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAA 93 (491)
T ss_pred hcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecc
Confidence 5798999999988885432 235799999999999999999976431 122233334332
Q ss_pred --------------------------------ccccHHHHHHHHhhcCCCCCCceEEEEeC-Chhhhhcc-CcccEEEcC
Q 008394 60 --------------------------------REESQDQEESLIESLDWLTPVCRIIITTR-NKQVLRNW-GVRKIYEME 105 (567)
Q Consensus 60 --------------------------------~~~~~~~~~~l~~~~~~~~~~~~ilvTtR-~~~~~~~~-~~~~~~~l~ 105 (567)
........+.|...+..-.+..++|++|. ...+...+ .....++++
T Consensus 94 s~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~ 173 (491)
T PRK14964 94 SNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQ 173 (491)
T ss_pred cCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecc
Confidence 22222445555555554455666665553 33433332 223578999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~ 145 (567)
+++.++..+.+.+.+...+ -+++..+.|++.++|.+..+.
T Consensus 174 ~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 174 KIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999998875543 344578899999999875443
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00043 Score=76.41 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=91.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-----------------------cCCceEEEE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-----------------------DFEGSCFLE 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-----------------------~f~~~~~~~ 57 (567)
+||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.. ....+++++
T Consensus 17 iiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eid 95 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEID 95 (824)
T ss_pred hcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEec
Confidence 5799999999999995432 2346899999999999999999876531 011122332
Q ss_pred c--------------------------------CccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhccC-cccEEE
Q 008394 58 N--------------------------------VREESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNWG-VRKIYE 103 (567)
Q Consensus 58 ~--------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~~-~~~~~~ 103 (567)
. .........+.|++.+.--...+.+|++| ....+...+. ....++
T Consensus 96 aas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~ 175 (824)
T PRK07764 96 AASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYP 175 (824)
T ss_pred ccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEE
Confidence 2 22222244444555544444555555555 4333433322 235799
Q ss_pred cCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHH
Q 008394 104 MEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 104 l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~ 145 (567)
+.+++.++..+.+.+.....+ ...+....|++.++|.+..+.
T Consensus 176 F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 176 FRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 999999999999888664333 234467889999999885444
No 106
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.00 E-value=0.00015 Score=77.96 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHhcc---cCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAV---ESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+.|||+++++|...|.. +.....++.|+|++|.|||+.++.|.+.+.
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999998865 223335778999999999999999987653
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00038 Score=73.65 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=94.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------CCceEEEE--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD---------------------FEGSCFLE-- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~---------------------f~~~~~~~-- 57 (567)
++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+.+.+... ...+++++
T Consensus 18 IiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a 96 (624)
T PRK14959 18 VAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA 96 (624)
T ss_pred hcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecc
Confidence 478888888888888543 224678899999999999999998765321 11123332
Q ss_pred ------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEEcC
Q 008394 58 ------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYEME 105 (567)
Q Consensus 58 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~l~ 105 (567)
.+........+.|...+.--.....+|++|.. ..+...+ .....++++
T Consensus 97 ~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~ 176 (624)
T PRK14959 97 SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFT 176 (624)
T ss_pred cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccC
Confidence 22222224444555444332344555555544 3333222 122478999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCc-hHHHHHHHHh
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVP-LALKVLGCFL 151 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glP-Lai~~~~~~l 151 (567)
+++.++..+.+.+.+...+ ...+.++.|++.++|.+ .|+..+...+
T Consensus 177 pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 177 RLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999988765433 44557889999999965 5666665443
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.98 E-value=0.00015 Score=67.51 Aligned_cols=124 Identities=16% Similarity=0.267 Sum_probs=71.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCc--eEE---------------------------------EEcCccccHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEG--SCF---------------------------------LENVREESQDQ 66 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~--~~~---------------------------------~~~~~~~~~~~ 66 (567)
...+.|+|..|+|||.|.+++++.+.+..+. +++ +|+++......
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCch
Confidence 4568999999999999999999876543221 222 33333322211
Q ss_pred --HHHHHhhcCC-CCCCceEEEEeCCh-hhhhcc--------CcccEEEcCCCCHHHHHHHHHHhhccCC--CChHHHHH
Q 008394 67 --EESLIESLDW-LTPVCRIIITTRNK-QVLRNW--------GVRKIYEMEALEYHHALELFSRHAFKQN--HPDELSSK 132 (567)
Q Consensus 67 --~~~l~~~~~~-~~~~~~ilvTtR~~-~~~~~~--------~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~ 132 (567)
.+.+...++. ...|.++|+|++.. .-...+ ...-++++++.++++..+++.+++...+ -++++++-
T Consensus 114 ~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 114 RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 1222222221 14577899998654 222222 2235799999999999999999885433 35557777
Q ss_pred HHHHcCCCchHHH
Q 008394 133 AVKYAQGVPLALK 145 (567)
Q Consensus 133 i~~~c~glPLai~ 145 (567)
+++.+.+..-.+.
T Consensus 194 l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 194 LARRFRRDVRELE 206 (219)
T ss_dssp HHHHTTSSHHHHH
T ss_pred HHHhhcCCHHHHH
Confidence 7777665444333
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00033 Score=74.55 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=92.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEE--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLE-- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~-- 57 (567)
++|.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+.+.+.. .|...+.++
T Consensus 18 IIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaA 96 (709)
T PRK08691 18 LVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAA 96 (709)
T ss_pred HcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecc
Confidence 589999999999999543 22356899999999999999988765311 122222332
Q ss_pred ------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEcC
Q 008394 58 ------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEME 105 (567)
Q Consensus 58 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l~ 105 (567)
++........+.|.+.+......+++|++|.+.. +.... .....++++
T Consensus 97 s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~ 176 (709)
T PRK08691 97 SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLR 176 (709)
T ss_pred ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcC
Confidence 2222222334444444433345566776665442 22121 112357888
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~ 147 (567)
+++.++..+.+.+.+...+ ...+..+.|++.++|.+.-+..+
T Consensus 177 ~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 177 NMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999988775443 23447899999999988544433
No 110
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.95 E-value=2e-05 Score=75.29 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=80.1
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc--------------------------------CCceEEEEcCccccHHH
Q 008394 19 SKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------------------FEGSCFLENVREESQDQ 66 (567)
Q Consensus 19 ~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------------------f~~~~~~~~~~~~~~~~ 66 (567)
.+....+.+||++|+||||||+.+...-+.+ -.-++|+|.+..+++.|
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ 238 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ 238 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh
Confidence 4667889999999999999999996532221 23466777777777777
Q ss_pred HHHHHhhcCCCCCCceEEE--EeCChhhhhc---cCcccEEEcCCCCHHHHHHHHHHhhc---cCCC-------Ch----
Q 008394 67 EESLIESLDWLTPVCRIII--TTRNKQVLRN---WGVRKIYEMEALEYHHALELFSRHAF---KQNH-------PD---- 127 (567)
Q Consensus 67 ~~~l~~~~~~~~~~~~ilv--TtR~~~~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~---~~~~-------~~---- 127 (567)
.|.+.... ..|..++| ||.+++..-. +..-.++-+++|..++...++.+.+. +.+. +.
T Consensus 239 QD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve 315 (554)
T KOG2028|consen 239 QDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVE 315 (554)
T ss_pred hhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhh
Confidence 76665444 46766665 5666543211 12235789999999999999998543 2221 11
Q ss_pred -HHHHHHHHHcCCCch
Q 008394 128 -ELSSKAVKYAQGVPL 142 (567)
Q Consensus 128 -~~~~~i~~~c~glPL 142 (567)
.+.+-++..|.|-..
T Consensus 316 ~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 316 DSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhcCchHH
Confidence 156667777777653
No 111
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00085 Score=71.48 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------------------------cCCceE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS--------------------------DFEGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--------------------------~f~~~~ 54 (567)
+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+.. .+...+
T Consensus 18 viGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~ 96 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYT 96 (618)
T ss_pred hcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCcee
Confidence 5898999999999995432 3356799999999999999999665421 122223
Q ss_pred EE--------------------------------EcCccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-Cccc
Q 008394 55 FL--------------------------------ENVREESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRK 100 (567)
Q Consensus 55 ~~--------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~ 100 (567)
++ |.+........+.|...+.--....++|++|.+ ..+.... ....
T Consensus 97 eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~ 176 (618)
T PRK14951 97 ELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCL 176 (618)
T ss_pred ecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhce
Confidence 33 233333334445555544433445566655543 3333222 2235
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHH
Q 008394 101 IYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~ 146 (567)
.+++++++.++..+.+.+.+...+ ...+..+.|++.++|.+.-+..
T Consensus 177 ~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 177 QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 799999999999999998775433 2344678999999997754443
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0002 Score=76.38 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=90.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~ 59 (567)
+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.. .|...+.++..
T Consensus 18 ivGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaa 96 (647)
T PRK07994 18 VVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAA 96 (647)
T ss_pred hcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccc
Confidence 5899999999999995432 2345789999999999999999876422 12223334332
Q ss_pred c--------------------------------cccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEEcC
Q 008394 60 R--------------------------------EESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYEME 105 (567)
Q Consensus 60 ~--------------------------------~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~l~ 105 (567)
. .......+.|++.+.--....++|.+|.+ ..+...+ .....+++.
T Consensus 97 s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~ 176 (647)
T PRK07994 97 SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 (647)
T ss_pred ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCC
Confidence 1 11113333333333322344555554444 3333222 223579999
Q ss_pred CCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
+++.++..+.+.+..... ....+..+.|++.++|.+--+..+
T Consensus 177 ~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 177 ALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998866332 233346788999999988644444
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=0.00027 Score=70.28 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-----------------------------C
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-----------------------------E 51 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-----------------------------~ 51 (567)
++|.++..+.+.+++..+ .-..++.++|++|+||||+|+.+++.....| .
T Consensus 23 ~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~ 101 (316)
T PHA02544 23 CILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGG 101 (316)
T ss_pred hcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCCC
Confidence 478999999999998643 2345777799999999999999987532111 2
Q ss_pred ceEEEEcCccc-cHHHHHHHHhhcCCCCCCceEEEEeCChhhhhc-c-CcccEEEcCCCCHHHHHHHHHH
Q 008394 52 GSCFLENVREE-SQDQEESLIESLDWLTPVCRIIITTRNKQVLRN-W-GVRKIYEMEALEYHHALELFSR 118 (567)
Q Consensus 52 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~-~-~~~~~~~l~~L~~~~~~~l~~~ 118 (567)
.+++++++... ..+..+.+...+.....++.+|+||........ + ..-..+.++..+.++..+++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 34556665444 223334444444444567788888865432111 1 1123677777788887766554
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0013 Score=70.35 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------------------------------cC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------------------------------DF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------------------------------~f 50 (567)
++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|..+.+.+.. ++
T Consensus 18 ivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~ 96 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSL 96 (620)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCC
Confidence 579999999999988533 22356999999999999999999876521 12
Q ss_pred CceEE-------------------------------EEcCccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhcc-C
Q 008394 51 EGSCF-------------------------------LENVREESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNW-G 97 (567)
Q Consensus 51 ~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~-~ 97 (567)
+...+ +++.........+.|...+.--...+.+|++| +...+...+ .
T Consensus 97 n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~S 176 (620)
T PRK14954 97 NISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS 176 (620)
T ss_pred CeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh
Confidence 21111 11111111123344444443333445555444 433333322 2
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCch
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPL 142 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPL 142 (567)
....+++.+++.++....+.+.+... .-+++.++.+++.++|..-
T Consensus 177 Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 177 RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 23589999999999998888766433 3455578999999999664
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00031 Score=75.43 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-cC-----------------CceEEEEc----
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-DF-----------------EGSCFLEN---- 58 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~f-----------------~~~~~~~~---- 58 (567)
++|.+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+-. +. ..++.++.
T Consensus 20 IiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~ 98 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNN 98 (725)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccC
Confidence 579999999999999543 23456789999999999999999876421 10 11122222
Q ss_pred ----------------------------CccccHHHHHHHHhhcCCCCCCceEE-EEeCChhhhhcc-CcccEEEcCCCC
Q 008394 59 ----------------------------VREESQDQEESLIESLDWLTPVCRII-ITTRNKQVLRNW-GVRKIYEMEALE 108 (567)
Q Consensus 59 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~il-vTtR~~~~~~~~-~~~~~~~l~~L~ 108 (567)
+.......++.|+..+........+| +|++...+.... .....+++.+++
T Consensus 99 ~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~ 178 (725)
T PRK07133 99 GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRIS 178 (725)
T ss_pred CHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCC
Confidence 11111134445555444434445544 444444443332 223579999999
Q ss_pred HHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHH
Q 008394 109 YHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 109 ~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~ 146 (567)
.++..+.+...+... ....+.++.+++.++|-+.-+..
T Consensus 179 ~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 179 EDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999998765433 23344688999999997754433
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.89 E-value=0.00057 Score=64.41 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=77.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCc------------------------eEEEEcCccccH-HHH-HHHHhhcCC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEG------------------------SCFLENVREESQ-DQE-ESLIESLDW 76 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~------------------------~~~~~~~~~~~~-~~~-~~l~~~~~~ 76 (567)
..+.|+|..|+|||.|++.+++.+.+.-.. .+.+|+++.... ..| +.+...++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 578999999999999999998754322122 233455542211 122 223333322
Q ss_pred -CCCCceEEEEeCChhhhhcc---------CcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHH
Q 008394 77 -LTPVCRIIITTRNKQVLRNW---------GVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 77 -~~~~~~ilvTtR~~~~~~~~---------~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai 144 (567)
...|..+|+|++........ ....+++++++++++-.++++.++... .-++++..-+++++.|..-.+
T Consensus 126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 23567788888754321111 122578899999999999999665433 235557788888887765544
Q ss_pred HHHHH
Q 008394 145 KVLGC 149 (567)
Q Consensus 145 ~~~~~ 149 (567)
..+-.
T Consensus 206 ~~~l~ 210 (234)
T PRK05642 206 FDLLE 210 (234)
T ss_pred HHHHH
Confidence 44433
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0014 Score=69.52 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-----------------------CCceEEEE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-----------------------FEGSCFLE 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-----------------------f~~~~~~~ 57 (567)
++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+.+.+... ...++.++
T Consensus 15 ivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieid 93 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELD 93 (584)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEec
Confidence 589999999999999543 223457999999999999999998764310 11223333
Q ss_pred cCcc--------------------------------ccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhcc-CcccEEE
Q 008394 58 NVRE--------------------------------ESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNW-GVRKIYE 103 (567)
Q Consensus 58 ~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~-~~~~~~~ 103 (567)
.... ......+.|+..+........+|++| ....+...+ .....++
T Consensus 94 aas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~ 173 (584)
T PRK14952 94 AASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYP 173 (584)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEE
Confidence 2221 11133444444444334455555444 444333332 2235799
Q ss_pred cCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCch
Q 008394 104 MEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPL 142 (567)
Q Consensus 104 l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPL 142 (567)
+.+++.++..+.+.+.+...+ ..++....|++.++|-+-
T Consensus 174 F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 174 FRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 999999999999988665433 344467889999999875
No 118
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.4e-05 Score=68.84 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=85.8
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
.+...+++..|.+..++....++.|.+|.+.+|+|..+.+.+..-+++|..|.+.+|... ++.+...+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~--~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ--ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh--hhhhcchhccCCccceee
Confidence 577889999999988888888999999999999999999998878899999999999765 455555677899999999
Q ss_pred cCCCccCCccCC----cccCCCCCcEEEcCCC
Q 008394 433 LRGSKSLKSLPA----GIFNLEFLTTLDLSGC 460 (567)
Q Consensus 433 l~~~~~~~~~p~----~l~~l~~L~~L~Ls~~ 460 (567)
+-+|.. ..-.. -+..+|+|++||.+.-
T Consensus 120 ll~Npv-~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPV-EHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCch-hcccCceeEEEEecCcceEeehhhh
Confidence 988873 32221 2567899999998774
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00051 Score=71.14 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=89.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-----------------------cCCceEEEE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-----------------------DFEGSCFLE 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-----------------------~f~~~~~~~ 57 (567)
++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+.+.. +++ .++++
T Consensus 19 iiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~ 96 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEID 96 (451)
T ss_pred hcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEee
Confidence 5799999999999995432 2356889999999999999999876421 111 22222
Q ss_pred cC--------------------------------ccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEE
Q 008394 58 NV--------------------------------REESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYE 103 (567)
Q Consensus 58 ~~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~ 103 (567)
.. ........+.|...+.....+..+|++|.. ..+...+ .....++
T Consensus 97 g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~ 176 (451)
T PRK06305 97 GASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMH 176 (451)
T ss_pred ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEe
Confidence 11 111112334444444433445566666533 2222222 1234799
Q ss_pred cCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHH
Q 008394 104 MEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 104 l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai 144 (567)
++++++++....+.+.+...+ ...+.++.+++.++|.+--+
T Consensus 177 f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 177 LKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 999999999999888764432 34457889999999976433
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0011 Score=71.20 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=94.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC----------------------CceEE---
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF----------------------EGSCF--- 55 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f----------------------~~~~~--- 55 (567)
++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.+.... ..++.
T Consensus 18 iiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~ 96 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDA 96 (585)
T ss_pred hcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEec
Confidence 5899999999999885432 235678999999999999999987652110 11112
Q ss_pred -----------------------------EEcCccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEc
Q 008394 56 -----------------------------LENVREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEM 104 (567)
Q Consensus 56 -----------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l 104 (567)
+++......+..+.|...+......+.+|++|... .+...+ .....+++
T Consensus 97 ~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f 176 (585)
T PRK14950 97 ASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDF 176 (585)
T ss_pred cccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeC
Confidence 22222222244455555554444556666655432 222221 12247889
Q ss_pred CCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHH
Q 008394 105 EALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
++++.++....+.+.+...+ ...+.++.+++.++|.+..+.....
T Consensus 177 ~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 177 HRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999988775433 3445788999999999865554443
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0018 Score=69.62 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-C----------------------CceEEEE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-F----------------------EGSCFLE 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f----------------------~~~~~~~ 57 (567)
++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+... . ..++.++
T Consensus 18 liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~ 96 (620)
T PRK14948 18 LVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEID 96 (620)
T ss_pred ccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEe
Confidence 4799999999999996542 23578999999999999999998775321 0 0112222
Q ss_pred --------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEE
Q 008394 58 --------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYE 103 (567)
Q Consensus 58 --------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~ 103 (567)
..........+.|...+.--.....+|++|.+. .+...+ .....++
T Consensus 97 ~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~ 176 (620)
T PRK14948 97 AASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFD 176 (620)
T ss_pred ccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEE
Confidence 222222234444444444323344555444433 222222 1224688
Q ss_pred cCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHH
Q 008394 104 MEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 104 l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
+.+++.++....+.+.+...+ ...+.+..+++.++|.+..+..+..
T Consensus 177 f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 177 FRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 889999998888887665432 3345788999999998865554433
No 122
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00023 Score=74.71 Aligned_cols=145 Identities=15% Similarity=0.150 Sum_probs=91.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEc-
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLEN- 58 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~- 58 (567)
+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+.. .++.++.++.
T Consensus 18 ivGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa 96 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA 96 (509)
T ss_pred hcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc
Confidence 5899999999999995432 2346799999999999999999875421 2333344432
Q ss_pred -------------------------------CccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEcC
Q 008394 59 -------------------------------VREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEME 105 (567)
Q Consensus 59 -------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l~ 105 (567)
+........+.|...+.-....+++|++|.+. .+.... .....++++
T Consensus 97 s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~ 176 (509)
T PRK14958 97 SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLA 176 (509)
T ss_pred ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcC
Confidence 22222234444444444334556666655443 332222 112468899
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~ 146 (567)
+++.++..+.+.+.+...+ ..++..+.|++.++|.+.-+..
T Consensus 177 ~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 177 QLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 9999998888777664333 2334678899999998854443
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00074 Score=71.37 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=89.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~ 59 (567)
++|-+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+.+.. .|...++++..
T Consensus 18 ivGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~ 96 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA 96 (527)
T ss_pred hcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc
Confidence 5799999999999985432 2345789999999999999999876521 12333344322
Q ss_pred --------------------------------ccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEcC
Q 008394 60 --------------------------------REESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEME 105 (567)
Q Consensus 60 --------------------------------~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l~ 105 (567)
........+.|...+.-....+.+|++|.+. .+.... .....++++
T Consensus 97 ~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~ 176 (527)
T PRK14969 97 SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 176 (527)
T ss_pred ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcC
Confidence 1111133344444443333455565555443 222221 112478999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai 144 (567)
+++.++..+.+.+.+...+ ..++..+.|++.++|.+--+
T Consensus 177 ~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 177 QMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 9999999998887764332 23346788999999987533
No 124
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.6e-07 Score=83.43 Aligned_cols=152 Identities=21% Similarity=0.208 Sum_probs=70.5
Q ss_pred CCCeeEEeeCCCCCCC-CCCC-CCCCCceEEEccCC-cccccch-hhhhhccCCcEEecccCccccccCCCCCCCC-CCc
Q 008394 352 FTEVKYLHWHGYPLKS-MPSN-ICAEQLVFLEVPNS-SIEQLWD-GMKQHRGKLNQIIHATCKMLIAKTPNPTLIP-HLN 426 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~n-~i~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~ 426 (567)
|.+|+.|.++|+.+.. +-.. ..-.+|+.|+++.+ .++.... -++..|..|..|+|++|.... +. .-..+. --+
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~-~~-Vtv~V~hise 286 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT-EK-VTVAVAHISE 286 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-hh-hhHHHhhhch
Confidence 3456666666665442 1111 12345666666664 4444322 233466666666666665433 11 000111 124
Q ss_pred CCcEEecCCCccC-C--ccCCcccCCCCCcEEEcCCCCCCCcC--Cccc-cCCCceeeccCccCcccCh---hhhccCCC
Q 008394 427 KLVILNLRGSKSL-K--SLPAGIFNLEFLTTLDLSGCPKLKRL--PEIS-SSNTSCLFLSGTAIEELPS---SIELLLRL 497 (567)
Q Consensus 427 ~L~~L~l~~~~~~-~--~~p~~l~~l~~L~~L~Ls~~~~~~~~--~~~~-~~~L~~L~l~~~~i~~lp~---~~~~l~~L 497 (567)
+|..|+++|+... + .+..-...+++|.+||||.|..+..- ..+. +..|++|.+++|..- .|. .+...+.|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcce
Confidence 5666666665311 0 11111224566666666666544431 1111 125666666664321 121 24555666
Q ss_pred cEEecCCCc
Q 008394 498 EYLDLSDCK 506 (567)
Q Consensus 498 ~~L~l~~~~ 506 (567)
.||++.+|-
T Consensus 366 ~yLdv~g~v 374 (419)
T KOG2120|consen 366 VYLDVFGCV 374 (419)
T ss_pred EEEEecccc
Confidence 666666553
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00031 Score=72.68 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=81.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccC--Cc-----------------------------------eEEEEcCcccc--
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDF--EG-----------------------------------SCFLENVREES-- 63 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f--~~-----------------------------------~~~~~~~~~~~-- 63 (567)
..+.|+|..|+|||.|+..+.+.+.... .. ++.+|+++...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK 221 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC
Confidence 4689999999999999999988543221 11 22233333221
Q ss_pred HHHHHHHHhhcCC-CCCCceEEEEeCChh-hh--------hccCcccEEEcCCCCHHHHHHHHHHhhccC----CCChHH
Q 008394 64 QDQEESLIESLDW-LTPVCRIIITTRNKQ-VL--------RNWGVRKIYEMEALEYHHALELFSRHAFKQ----NHPDEL 129 (567)
Q Consensus 64 ~~~~~~l~~~~~~-~~~~~~ilvTtR~~~-~~--------~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~----~~~~~~ 129 (567)
....+.+...++. ...|..||+|+.... .. ..+...-++.+++++.++-.+++.+++... .-++++
T Consensus 222 ~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev 301 (450)
T PRK14087 222 EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA 301 (450)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 1122223222221 134557888865431 11 112333578899999999999999988543 245568
Q ss_pred HHHHHHHcCCCchHHHHHHHHh
Q 008394 130 SSKAVKYAQGVPLALKVLGCFL 151 (567)
Q Consensus 130 ~~~i~~~c~glPLai~~~~~~l 151 (567)
..-|++.++|.|-.+..+...+
T Consensus 302 l~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 302 INFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHccCCCHHHHHHHHHHH
Confidence 8999999999997776655443
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.79 E-value=0.00044 Score=74.48 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|++..+..+.+.+. .+....+.|+|++|+||||+|+.+++..
T Consensus 156 iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 156 IVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred ceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4789999998887774 3344579999999999999999998654
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00045 Score=70.08 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=85.6
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISS--------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--------------------- 48 (567)
+.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+.+++....
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~ 226 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRM 226 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHH
Confidence 35788888888877632 1123567999999999999999999763211
Q ss_pred ----------cCCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----C
Q 008394 49 ----------DFEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 49 ----------~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
.=++++|+|++..... ..+..+...+... ..+..||.||...+..+. + .
T Consensus 227 lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GR 306 (398)
T PTZ00454 227 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGR 306 (398)
T ss_pred HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCc
Confidence 1245777876543211 1223333333221 235567888876544332 1 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
-+..+.++.-+.++..++|+....+.....+ ....+++.+.|.-
T Consensus 307 fd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC
Confidence 2456888888888888888876544322211 3456777776654
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.0011 Score=69.32 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=93.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-c-------------------CC-ceEEEE--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-D-------------------FE-GSCFLE-- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~-------------------f~-~~~~~~-- 57 (567)
++|-+..++.|...+..+. -.+++.++|+.|+||||+|+.+.+.+.. . +. .+..++
T Consensus 16 iiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaa 94 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAA 94 (535)
T ss_pred ccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccc
Confidence 5788999999999995432 3346799999999999999998876421 0 11 122222
Q ss_pred ------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEcC
Q 008394 58 ------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEME 105 (567)
Q Consensus 58 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l~ 105 (567)
.......+..+.|+..+......+.+|++|.+. .+.... .....+++.
T Consensus 95 s~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~ 174 (535)
T PRK08451 95 SNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFK 174 (535)
T ss_pred cccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcC
Confidence 222222234444444444444566767666553 222111 123579999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~ 147 (567)
+++.++..+.+.+.+...+ ..++.++.|++.++|.+.-+..+
T Consensus 175 ~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 175 QIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999987765433 24457889999999988555444
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0012 Score=69.00 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=92.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~ 59 (567)
++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.++..+.. .+.....++..
T Consensus 18 iiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa 96 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA 96 (486)
T ss_pred ccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc
Confidence 4788999999999995432 2346788999999999999999876421 12223333321
Q ss_pred --------------------------------ccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhcc-CcccEEEcC
Q 008394 60 --------------------------------REESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNW-GVRKIYEME 105 (567)
Q Consensus 60 --------------------------------~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~-~~~~~~~l~ 105 (567)
........+.|...+....+...+|++| +...+.... .....+++.
T Consensus 97 s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~ 176 (486)
T PRK14953 97 SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFS 176 (486)
T ss_pred cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcC
Confidence 1111133444554444434455555554 433332221 123478999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
+++.++..+.+.+.+...+ ..++.+..+++.++|.+..+....
T Consensus 177 ~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 177 KPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999888764433 334578889999999876555444
No 130
>PF14516 AAA_35: AAA-like domain
Probab=97.74 E-value=0.007 Score=60.27 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=44.6
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHHHHhccC
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLGCFLYKM 154 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~ 154 (567)
...+++++++.+|+.+|..++-.. ...+..+.+...+||+|..+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE--FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc--CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 357899999999999999887433 333348999999999999999999999764
No 131
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.9e-06 Score=70.83 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=21.9
Q ss_pred ccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCC
Q 008394 482 TAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGC 529 (567)
Q Consensus 482 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 529 (567)
|.+..+|..+..++.|+.|+++.|++. ..|.-+..+.+|-.|+..+|
T Consensus 87 neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 87 NEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 445555555555555555555554432 23333333444444444443
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0026 Score=67.55 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=92.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc----------------------cCCceEEEE-
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS----------------------DFEGSCFLE- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~----------------------~f~~~~~~~- 57 (567)
++|-+..+++|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.. +++ ..+++
T Consensus 18 iiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~idg 95 (563)
T PRK06647 18 LEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEIDG 95 (563)
T ss_pred ccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEecC
Confidence 579999999999999643 23456899999999999999999886521 122 22232
Q ss_pred -------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCC-hhhhhcc-CcccEEEc
Q 008394 58 -------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRN-KQVLRNW-GVRKIYEM 104 (567)
Q Consensus 58 -------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~-~~~~~~~-~~~~~~~l 104 (567)
.+.......++.|...+.-......+|.+|.. ..+...+ .....+++
T Consensus 96 as~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f 175 (563)
T PRK06647 96 ASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNF 175 (563)
T ss_pred cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEe
Confidence 22222223444555554433445555555533 3332222 12246899
Q ss_pred CCCCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCCchHHHHH
Q 008394 105 EALEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~glPLai~~~ 147 (567)
.+++.++..+.+.+.+...+. .++.+..|++.++|.+..+..+
T Consensus 176 ~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 176 RLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999887744332 3457888999999988554443
No 133
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.74 E-value=0.00041 Score=67.38 Aligned_cols=122 Identities=15% Similarity=0.207 Sum_probs=72.2
Q ss_pred CCCchHHHHHHHHHhcc------------c-CCCeEEEEEEcCCCChHHHHHHHHHHHHhc-------------------
Q 008394 1 MVGVESIVEEIESLLAV------------E-SKDVYCLGIWGIGGIGKTTIARAIFDKISS------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~------------~-~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------------------- 48 (567)
++|.++.+++|.++... . ......+.++|++|+|||++|+.+++.+..
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~ 103 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence 46777777776554321 0 011236899999999999999777653321
Q ss_pred ----------------cCCceEEEEcCccc---------cHHHHHHHHhhcCCCCCCceEEEEeCChhhhhcc--C----
Q 008394 49 ----------------DFEGSCFLENVREE---------SQDQEESLIESLDWLTPVCRIIITTRNKQVLRNW--G---- 97 (567)
Q Consensus 49 ----------------~f~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~--~---- 97 (567)
.-.+++++|++... ..+..+.|...+.....+.+||+++.....-... .
T Consensus 104 ~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~ 183 (284)
T TIGR02880 104 QYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFS 183 (284)
T ss_pred hhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHH
Confidence 11345666655421 1234455555554444455666666543221111 1
Q ss_pred --cccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 98 --VRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 98 --~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
....+++++++.+|..+++...+..
T Consensus 184 sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 184 SRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred hhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1347899999999999999887644
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.9e-05 Score=51.46 Aligned_cols=40 Identities=35% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCcEEeccCCCCCcccCcccCCCCCcceeccccccccccch
Q 008394 520 SLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 520 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
+|++|++++|++. .+|..++.|++|+.|++++|.++++|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4566666665444 344445666666666666666665554
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.73 E-value=8.6e-05 Score=64.34 Aligned_cols=54 Identities=31% Similarity=0.399 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 2 VGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+|+++.++++...+... ..+.+.|+|++|+|||++|+++++.+...-..+++++
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 58899999999998542 3458999999999999999999988643333344443
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0024 Score=68.67 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=92.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh-----------------------ccCCce----
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS-----------------------SDFEGS---- 53 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-----------------------~~f~~~---- 53 (567)
++|.+..++.|.+.+..+ .-.+.+.++|+.|+||||+|..+...+. .+|+..
T Consensus 19 viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~ 97 (614)
T PRK14971 19 VVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDA 97 (614)
T ss_pred hcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecc
Confidence 579999999999999543 2235689999999999999998877542 123221
Q ss_pred ---------------------------EEEEcCccccHHHHHHHHhhcCCCCCCceEEE-EeCChhhhhcc-CcccEEEc
Q 008394 54 ---------------------------CFLENVREESQDQEESLIESLDWLTPVCRIII-TTRNKQVLRNW-GVRKIYEM 104 (567)
Q Consensus 54 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilv-TtR~~~~~~~~-~~~~~~~l 104 (567)
++++..........+.|...+.--...+.+|+ ||+...+...+ .....+++
T Consensus 98 ~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f 177 (614)
T PRK14971 98 ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDF 177 (614)
T ss_pred cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeec
Confidence 12222222222344445544443344555554 44444444332 22357999
Q ss_pred CCCCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCCchHHHH
Q 008394 105 EALEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~glPLai~~ 146 (567)
.++++++..+.+.+.+...+. ..+.+..|++.++|..--+..
T Consensus 178 ~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 178 NRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999887654432 344688999999997754443
No 137
>PF13173 AAA_14: AAA domain
Probab=97.72 E-value=0.00013 Score=61.85 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=54.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCC--------------------------------ceEEEEcCccccHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFE--------------------------------GSCFLENVREESQDQEESL 70 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~--------------------------------~~~~~~~~~~~~~~~~~~l 70 (567)
+++.|.|+.|+||||++++++++.. .-. ..+++|.++.. ..|...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccHHHH
Confidence 5899999999999999999987643 111 22334444333 223333
Q ss_pred HhhcCCCCCCceEEEEeCChhhhhc-----c-CcccEEEcCCCCHHHH
Q 008394 71 IESLDWLTPVCRIIITTRNKQVLRN-----W-GVRKIYEMEALEYHHA 112 (567)
Q Consensus 71 ~~~~~~~~~~~~ilvTtR~~~~~~~-----~-~~~~~~~l~~L~~~~~ 112 (567)
...+....+..+|++|+.+...... + +....+++.||+..|-
T Consensus 80 lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 80 LKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3333333456899999887765533 1 2224688999988763
No 138
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.69 E-value=0.0001 Score=72.76 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=47.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQV 92 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~ 92 (567)
.-+..+|+|++|+||||||+++|+.+. ++|+..+|+..+.+...+..+ +..... +-||+.|-++..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtd-iqrsIl-----g~vv~st~d~~~ 234 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTD-MQRSVK-----GEVVASTFDEPA 234 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHH-HHHHhc-----CcEEEECCCCCH
Confidence 346899999999999999999999874 479999999988885443333 333332 246666655543
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.68 E-value=0.00035 Score=77.99 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++||+.++.++.+.|.... ..-+.++|++|+||||+|..+++.+.
T Consensus 189 ~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred ccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999985533 23567999999999999999998764
No 140
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0036 Score=61.53 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=90.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh---------------ccCCceEEEEcC---c--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS---------------SDFEGSCFLENV---R-- 60 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---------------~~f~~~~~~~~~---~-- 60 (567)
++|.+..++.+.+.+..+ .-.+...++|+.|+||+++|..+.+.+- ...+...|+.-. .
T Consensus 6 iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred hCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 579999999999999543 2247899999999999999999988642 124445555421 0
Q ss_pred ------------------cccHHH--------------------------------HHHHHhhcCCCCCCceEEEEeCCh
Q 008394 61 ------------------EESQDQ--------------------------------EESLIESLDWLTPVCRIIITTRNK 90 (567)
Q Consensus 61 ------------------~~~~~~--------------------------------~~~l~~~~~~~~~~~~ilvTtR~~ 90 (567)
....++ .+.|.+.+.--. .+.+|++|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred ccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECCh
Confidence 000112 222222222223 44455554443
Q ss_pred -hhhhcc-CcccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHHH
Q 008394 91 -QVLRNW-GVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 91 -~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
.+.... .....++++++++++..+.+.+......... ....++..++|.|..+.....
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~-~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI-NFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh-HHHHHHHHcCCCHHHHHHHHH
Confidence 333332 2235799999999999999998753322111 136789999999976655443
No 141
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.1e-05 Score=87.10 Aligned_cols=15 Identities=33% Similarity=0.312 Sum_probs=8.0
Q ss_pred hhccCCCcEEecCCC
Q 008394 491 IELLLRLEYLDLSDC 505 (567)
Q Consensus 491 ~~~l~~L~~L~l~~~ 505 (567)
+.+|++|+.||++.-
T Consensus 216 LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRD 230 (699)
T ss_pred HhcccCCCeeecccc
Confidence 444555555555543
No 142
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=2.3e-06 Score=70.34 Aligned_cols=35 Identities=6% Similarity=0.028 Sum_probs=15.5
Q ss_pred CCceEEEccCCcccccchhhhhhccCCcEEecccC
Q 008394 375 EQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATC 409 (567)
Q Consensus 375 ~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~ 409 (567)
..|...++++|.++++|+.+....+.++.|++++|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n 87 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN 87 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchh
Confidence 33444555555555554444433333333333333
No 143
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0014 Score=69.88 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=91.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc----------------------cCCc------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS----------------------DFEG------ 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~----------------------~f~~------ 52 (567)
++|.+..++.+.+.+..+. -.+.+.++|+.|.||||+|+.+.+.+.. +++.
T Consensus 18 viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa 96 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA 96 (559)
T ss_pred ccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc
Confidence 5899999999999996532 3456788999999999999999776421 1211
Q ss_pred -------------------------eEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhcc-CcccEEEcC
Q 008394 53 -------------------------SCFLENVREESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNW-GVRKIYEME 105 (567)
Q Consensus 53 -------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~-~~~~~~~l~ 105 (567)
+++++.+.......+..|...+.-......+|++| ....+.... .....+++.
T Consensus 97 s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~ 176 (559)
T PRK05563 97 SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFK 176 (559)
T ss_pred ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecC
Confidence 12233333333345555555554333444555444 333332222 123468899
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~ 145 (567)
+++.++..+.+...+...+ ..++..+.|++.++|-+..+.
T Consensus 177 ~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 177 RISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999988775433 234477889999998775443
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.60 E-value=0.00066 Score=69.45 Aligned_cols=140 Identities=18% Similarity=0.264 Sum_probs=81.4
Q ss_pred CCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC--------------------
Q 008394 2 VGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-------------------- 50 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-------------------- 50 (567)
.|.++.+++|.+.+.. +-...+-+.|+|++|+|||++|+.+++.....|
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~v 265 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLV 265 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHH
Confidence 4788889988887742 012345788999999999999999988654333
Q ss_pred -----------CceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhcc-----Cc
Q 008394 51 -----------EGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRNW-----GV 98 (567)
Q Consensus 51 -----------~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~-----~~ 98 (567)
++++|+|++..... ..+..+...+... ..+..||.||...+..... ..
T Consensus 266 r~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRf 345 (438)
T PTZ00361 266 RELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRI 345 (438)
T ss_pred HHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCee
Confidence 12333332211100 0111111111111 2345677777755443331 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+..++++..+.++..++|..+..+..-..+ ....++..+.|+-
T Consensus 346 d~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 346 DRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCC
Confidence 457899999999999999987644332211 2456666666543
No 145
>CHL00181 cbbX CbbX; Provisional
Probab=97.59 E-value=0.0013 Score=63.93 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCchHHHHHHHHHhcc------------c-CCCeEEEEEEcCCCChHHHHHHHHHHHHhc-------------------
Q 008394 1 MVGVESIVEEIESLLAV------------E-SKDVYCLGIWGIGGIGKTTIARAIFDKISS------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~------------~-~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------------------- 48 (567)
++|.++.+++|.++... . .+....+.++|++|+||||+|+.+++.+..
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 46777777766655321 0 112345899999999999999999653210
Q ss_pred ----------------cCCceEEEEcCccc---------cHHHHHHHHhhcCCCCCCceEEEEeCChhhhhcc-------
Q 008394 49 ----------------DFEGSCFLENVREE---------SQDQEESLIESLDWLTPVCRIIITTRNKQVLRNW------- 96 (567)
Q Consensus 49 ----------------~f~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~------- 96 (567)
.-.+++++|++... ..+..+.|...+.....+.+||.++.........
T Consensus 105 ~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~ 184 (287)
T CHL00181 105 QYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLS 184 (287)
T ss_pred HHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHH
Confidence 11345667765432 2344555555554444456677776543322111
Q ss_pred -CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 97 -GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 97 -~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
.....+.+++++.++..+++...+..
T Consensus 185 sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 185 SRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 12347999999999999999888754
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=0.00046 Score=76.39 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++
T Consensus 184 ~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 184 LIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred ccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999995442 3357899999999999999998875
No 147
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=1.3e-06 Score=84.85 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=73.1
Q ss_pred hccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccC-Cccc-CCCCCcEEEcCCCCCCCcCCccc----
Q 008394 397 HRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLP-AGIF-NLEFLTTLDLSGCPKLKRLPEIS---- 470 (567)
Q Consensus 397 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~-~l~~L~~L~Ls~~~~~~~~~~~~---- 470 (567)
.+.-+..+++.+|..++ +......-..++.|++|+.++|...+..+ ..++ +.++|++|-+++|+..+..-...
T Consensus 266 ~~~~i~~lnl~~c~~lT-D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLT-DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred cChHhhccchhhhcccc-chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 34445555655554433 22211122345666666666665443322 1222 35666666666665433321111
Q ss_pred cCCCceeeccCccCc---ccChhhhccCCCcEEecCCCccCccC-----cccccCCCCCcEEeccCCCCCcc-cCcccCC
Q 008394 471 SSNTSCLFLSGTAIE---ELPSSIELLLRLEYLDLSDCKRLKSL-----PSSLCKLKSLEILDLSGCSNLQR-LPECLGQ 541 (567)
Q Consensus 471 ~~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~ 541 (567)
..+|+.+++..++.. ++..--.+++.|+.|.++.|....+. ...-..+..|+.+-+++|+...+ ..+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 115566665554433 12222234556666666655544332 11223344556666666655432 2233455
Q ss_pred CCCcceeccccc
Q 008394 542 LSSLGTLLLEKP 553 (567)
Q Consensus 542 l~~L~~L~l~~~ 553 (567)
+++|+.+++..|
T Consensus 425 c~~Leri~l~~~ 436 (483)
T KOG4341|consen 425 CRNLERIELIDC 436 (483)
T ss_pred Ccccceeeeech
Confidence 556666555554
No 148
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.55 E-value=0.00076 Score=70.07 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=35.7
Q ss_pred CCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 2 VGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|.++.++++.+.+.. +-...+-+.|+|++|.|||++|+.+++.+.
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 5788999988887632 112345699999999999999999988753
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=8.4e-05 Score=49.28 Aligned_cols=35 Identities=34% Similarity=0.349 Sum_probs=21.6
Q ss_pred CceeeccCccCcccChhhhccCCCcEEecCCCccC
Q 008394 474 TSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRL 508 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 508 (567)
|++|++++|+|+.+|..+++|++|++|++++|++.
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 45555555677777666777777777777776633
No 150
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.53 E-value=0.0019 Score=68.35 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=83.3
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
++|.++.++++.+++.. +....+-+.++|++|+|||++|+.++...
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l 136 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRV 136 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHH
Confidence 35777777776665531 11223469999999999999999997531
Q ss_pred -------hccCCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----Cc
Q 008394 47 -------SSDFEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----GV 98 (567)
Q Consensus 47 -------~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~~ 98 (567)
+..=++++|+|++..... .....+...+... ..+-.||.||..+...+. + .-
T Consensus 137 ~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRf 216 (495)
T TIGR01241 137 RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRF 216 (495)
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcc
Confidence 112246888887644321 1222333333221 233455666655432221 1 22
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCC-hHHHHHHHHHcCCCc
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHP-DELSSKAVKYAQGVP 141 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~c~glP 141 (567)
+..+.++..+.++-.++++.+....... ......+++.+.|.-
T Consensus 217 d~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 217 DRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCC
Confidence 4578899889988899998876543322 223567888887743
No 151
>CHL00176 ftsH cell division protein; Validated
Probab=97.53 E-value=0.0013 Score=70.63 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHHHhcc---c-------CCCeEEEEEEcCCCChHHHHHHHHHHHHh-----------------------
Q 008394 1 MVGVESIVEEIESLLAV---E-------SKDVYCLGIWGIGGIGKTTIARAIFDKIS----------------------- 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~---~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~----------------------- 47 (567)
++|.++.++++.+.+.. . ....+-|.++|++|.|||++|+.++....
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~v 264 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARV 264 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHH
Confidence 35777777777666522 1 11245699999999999999999976311
Q ss_pred --------ccCCceEEEEcCccccH--------------HHHHHHHhhcCC--CCCCceEEEEeCChhhhhc-c----Cc
Q 008394 48 --------SDFEGSCFLENVREESQ--------------DQEESLIESLDW--LTPVCRIIITTRNKQVLRN-W----GV 98 (567)
Q Consensus 48 --------~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~--~~~~~~ilvTtR~~~~~~~-~----~~ 98 (567)
..=++++|+|++..... ..+..+...+.. ...+-.||.||...+..+. + .-
T Consensus 265 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 265 RDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 12245788887754321 223333333321 1234456666666443222 1 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCC-hHHHHHHHHHcCCC
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHP-DELSSKAVKYAQGV 140 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~c~gl 140 (567)
+..+.++.-+.++-.++++.++...... +.....+++.+.|.
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGF 387 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCC
Confidence 3578888889999999998887553322 22567778887773
No 152
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0023 Score=58.83 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=87.9
Q ss_pred CCchHHHHH---HHHHhcccC----CCeEEEEEEcCCCChHHHHHHHHHH------------------------------
Q 008394 2 VGVESIVEE---IESLLAVES----KDVYCLGIWGIGGIGKTTIARAIFD------------------------------ 44 (567)
Q Consensus 2 vGr~~~~~~---l~~~L~~~~----~~~~~i~I~G~gGvGKTtLa~~~~~------------------------------ 44 (567)
+|.++...+ |.+.|.... =..+-|..+|++|.|||-+|+++.+
T Consensus 124 iGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely 203 (368)
T COG1223 124 IGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELY 203 (368)
T ss_pred hchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHH
Confidence 677776654 556664321 1357899999999999999999964
Q ss_pred -HHhccCCceEEEEcCcccc------------HHHHHHHHhhcCCC--CCCceEEEEeCChhhhhccC---cccEEEcCC
Q 008394 45 -KISSDFEGSCFLENVREES------------QDQEESLIESLDWL--TPVCRIIITTRNKQVLRNWG---VRKIYEMEA 106 (567)
Q Consensus 45 -~~~~~f~~~~~~~~~~~~~------------~~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~~---~~~~~~l~~ 106 (567)
+.++.=+|++|+|.+.... .+....|...+.-. +.|-..|..|..++..+..- -...++...
T Consensus 204 ~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~L 283 (368)
T COG1223 204 ERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKL 283 (368)
T ss_pred HHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeC
Confidence 2234558999988544322 24556666655432 45556666677666544321 123566666
Q ss_pred CCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 107 LEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 107 L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
=+++|-.+++...+-.-.-+-+ ..+.++++.+|+-
T Consensus 284 P~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 284 PNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred CChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCC
Confidence 6788888898888744332222 2566777777753
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0018 Score=69.29 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=91.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-c--------------------CCceEEEE--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-D--------------------FEGSCFLE-- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~--------------------f~~~~~~~-- 57 (567)
++|.+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.+.. + ....+.++
T Consensus 18 iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~ 96 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA 96 (576)
T ss_pred ccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc
Confidence 589999999999998543 22356789999999999999999876421 0 11122222
Q ss_pred ------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEe-CChhhhhcc-CcccEEEcC
Q 008394 58 ------------------------------NVREESQDQEESLIESLDWLTPVCRIIITT-RNKQVLRNW-GVRKIYEME 105 (567)
Q Consensus 58 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTt-R~~~~~~~~-~~~~~~~l~ 105 (567)
.+........+.|...+..-.....+|++| ....+.... .....++++
T Consensus 97 s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~ 176 (576)
T PRK14965 97 SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFR 176 (576)
T ss_pred CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcC
Confidence 222222233444544444334455565544 444343332 123468899
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCc-hHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVP-LALKVL 147 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glP-Lai~~~ 147 (567)
+++.++....+...+...+ ..++..+.+++.++|.. .|+..+
T Consensus 177 ~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 177 RIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999988887664433 33457888999999966 444444
No 154
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.45 E-value=0.00025 Score=60.90 Aligned_cols=89 Identities=22% Similarity=0.309 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh--------------------ccCCceEEEEcCcc
Q 008394 2 VGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS--------------------SDFEGSCFLENVRE 61 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~--------------------~~f~~~~~~~~~~~ 61 (567)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-. ..-.+.+++.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~ 80 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDR 80 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHH
Confidence 6888999999988876444556789999999999999999986411 12334667777777
Q ss_pred ccHHHHHHHHhhcCCC-CCCceEEEEeCCh
Q 008394 62 ESQDQEESLIESLDWL-TPVCRIIITTRNK 90 (567)
Q Consensus 62 ~~~~~~~~l~~~~~~~-~~~~~ilvTtR~~ 90 (567)
...+....|...+... ..+.|+|.||+..
T Consensus 81 L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 81 LSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp S-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 7776766666655432 5677999998865
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.43 E-value=0.0021 Score=67.12 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCc--eEEE---------------------------------EcCccccH--
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEG--SCFL---------------------------------ENVREESQ-- 64 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~--~~~~---------------------------------~~~~~~~~-- 64 (567)
...+.|+|++|+|||+|++.+.+.+.+.++. +.++ |+++....
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH
Confidence 3569999999999999999999887654322 2232 22221111
Q ss_pred HHHHHHHhhcCC-CCCCceEEEEeCChh-h--------hhccCcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHH
Q 008394 65 DQEESLIESLDW-LTPVCRIIITTRNKQ-V--------LRNWGVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSK 132 (567)
Q Consensus 65 ~~~~~l~~~~~~-~~~~~~ilvTtR~~~-~--------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~ 132 (567)
...+.+...++. ...|..+|+|+.... . ...+....++++++.+.++-.+++++.+... .-++++...
T Consensus 228 ~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 307 (450)
T PRK00149 228 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF 307 (450)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 011122221111 124556888876532 1 1122333579999999999999999988643 346668899
Q ss_pred HHHHcCCCchHHHHHHHHhc------cC--CHHHHHHHHHHH
Q 008394 133 AVKYAQGVPLALKVLGCFLY------KM--EKEVWDSAINKL 166 (567)
Q Consensus 133 i~~~c~glPLai~~~~~~l~------~~--~~~~w~~~~~~l 166 (567)
|++.+.|..-.+..+-..+. ++ +.+..+.++..+
T Consensus 308 ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 308 IAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99999887664443322221 11 555555555543
No 156
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=8e-05 Score=69.47 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=88.8
Q ss_pred CCeeEEeeCCCCCCCCCCC--CCCCCceEEEccCCccc--ccchhhhhhccCCcEEecccCccccccCCCCCCCCC-CcC
Q 008394 353 TEVKYLHWHGYPLKSMPSN--ICAEQLVFLEVPNSSIE--QLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPH-LNK 427 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~n~i~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~ 427 (567)
+.|++|+++.|++.+.-.. ...++|++|-+.+..+. +...... .+|.+++|.+|.|.... ...+-..... -+.
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~-~lP~vtelHmS~N~~rq-~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD-DLPKVTELHMSDNSLRQ-LNLDDNCIEDWSTE 174 (418)
T ss_pred ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh-cchhhhhhhhccchhhh-hccccccccccchh
Confidence 3777777777765432221 23566777777666443 2222222 66666666666663221 1111111111 124
Q ss_pred CcEEecCCCccCCcc--CCcccCCCCCcEEEcCCCCCCC---cCCccccCCCceeeccCccCcccC--hhhhccCCCcEE
Q 008394 428 LVILNLRGSKSLKSL--PAGIFNLEFLTTLDLSGCPKLK---RLPEISSSNTSCLFLSGTAIEELP--SSIELLLRLEYL 500 (567)
Q Consensus 428 L~~L~l~~~~~~~~~--p~~l~~l~~L~~L~Ls~~~~~~---~~~~~~~~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L 500 (567)
+++|+...|...... ..--.-+|++..+.+..|+.-. +-.....+.+..|+|+.|+|.... ..+.++++|.-|
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 444444444321110 0101124566666666664322 111222235667778777777553 347778888888
Q ss_pred ecCCCccCccCcc------cccCCCCCcEEecc
Q 008394 501 DLSDCKRLKSLPS------SLCKLKSLEILDLS 527 (567)
Q Consensus 501 ~l~~~~~~~~~p~------~~~~l~~L~~L~l~ 527 (567)
.+.++++...+-. -++.+++++.|+=+
T Consensus 255 Rv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 255 RVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8888776554432 25677777777643
No 157
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.42 E-value=0.0023 Score=66.64 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=80.1
Q ss_pred CCchHHHHHHHHHhcc--------cCCCeEEEEEEcCCCChHHHHHHHHHHHH---------------------------
Q 008394 2 VGVESIVEEIESLLAV--------ESKDVYCLGIWGIGGIGKTTIARAIFDKI--------------------------- 46 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~--------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~--------------------------- 46 (567)
.|.+..++.+.+.... +-...+-|.++|++|.|||.+|+.+....
T Consensus 231 gGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~ 310 (489)
T CHL00195 231 GGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQM 310 (489)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHH
Confidence 3666666666543211 11334679999999999999999997642
Q ss_pred ----hccCCceEEEEcCccccH------------HHHHHHHhhcCCCCCCceEEEEeCChhhhh-cc----CcccEEEcC
Q 008394 47 ----SSDFEGSCFLENVREESQ------------DQEESLIESLDWLTPVCRIIITTRNKQVLR-NW----GVRKIYEME 105 (567)
Q Consensus 47 ----~~~f~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~-~~----~~~~~~~l~ 105 (567)
+..-++++|+|++..... .....+...+.....+--||.||......+ .+ .-+..+.++
T Consensus 311 f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~ 390 (489)
T CHL00195 311 IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLD 390 (489)
T ss_pred HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeC
Confidence 123467888887654321 112222222221223334566776554222 11 224577888
Q ss_pred CCCHHHHHHHHHHhhccCCC---ChHHHHHHHHHcCCCc
Q 008394 106 ALEYHHALELFSRHAFKQNH---PDELSSKAVKYAQGVP 141 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~~---~~~~~~~i~~~c~glP 141 (567)
.-+.++-.++|+.+..+... .+.....+++.+.|.-
T Consensus 391 lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 391 LPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 77888989999887654321 1113566777766654
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0049 Score=61.00 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=76.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC---ccccHHHH---------
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV---REESQDQE--------- 67 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~---~~~~~~~~--------- 67 (567)
-...+.++|+.|+||||+|..+.+.+-. ..+...++.-. .....++.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999876421 12334444321 11222232
Q ss_pred -----------------------HHHHhhcCCCCCCceEEEEeCChhh-hhcc-CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 68 -----------------------ESLIESLDWLTPVCRIIITTRNKQV-LRNW-GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 68 -----------------------~~l~~~~~~~~~~~~ilvTtR~~~~-~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
+.|.+.+.--..++.+|++|.+.+. .... ..-..+.+.+++.+++.+.+.....
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~- 179 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP- 179 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-
Confidence 2233322222345666777766533 2222 1224799999999999999987642
Q ss_pred CCCChHHHHHHHHHcCCCchHHHHH
Q 008394 123 QNHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 123 ~~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
..+++.+..++..++|.|+....+
T Consensus 180 -~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 -ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -cCChHHHHHHHHHcCCCHHHHHHH
Confidence 223334677889999999765544
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00073 Score=70.84 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHhccc----CCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC
Q 008394 2 VGVESIVEEIESLLAVE----SKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE 51 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~----~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~ 51 (567)
+|.++..++|.+.|+-. .-.-+++++||++|||||+|++.+++.+...|-
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 68899999999999652 233469999999999999999999987766553
No 160
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0033 Score=65.07 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCC--ceEE----------------------------------EEcCccccH-
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFE--GSCF----------------------------------LENVREESQ- 64 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~--~~~~----------------------------------~~~~~~~~~- 64 (567)
...+.|||.+|+|||.|++.+++.+.+..+ .+.| +|+++....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 346999999999999999999987644332 1223 233321110
Q ss_pred H-HHHHHHhhcCC-CCCCceEEEEeC-Chhhhhc--------cCcccEEEcCCCCHHHHHHHHHHhhcc--CCCChHHHH
Q 008394 65 D-QEESLIESLDW-LTPVCRIIITTR-NKQVLRN--------WGVRKIYEMEALEYHHALELFSRHAFK--QNHPDELSS 131 (567)
Q Consensus 65 ~-~~~~l~~~~~~-~~~~~~ilvTtR-~~~~~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~ 131 (567)
. .-+.+...+.. ...|..||+||. .+.-... +....++++++.+.+.-.+++++.+.. ..-++++..
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~ 289 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLN 289 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 0 01112222111 123557888874 3322211 222347899999999999999998753 334566888
Q ss_pred HHHHHcCCCchHHH
Q 008394 132 KAVKYAQGVPLALK 145 (567)
Q Consensus 132 ~i~~~c~glPLai~ 145 (567)
.|++.+.|.--.+.
T Consensus 290 ~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 290 FVAENVDDNLRRLR 303 (440)
T ss_pred HHHhccccCHHHHH
Confidence 88888887544433
No 161
>PRK08118 topology modulation protein; Reviewed
Probab=97.38 E-value=0.00017 Score=64.11 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=28.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh---ccCCceEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS---SDFEGSCFL 56 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~---~~f~~~~~~ 56 (567)
+.|.|+|++|+||||+|+++++... -+|+...|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3689999999999999999999864 357777754
No 162
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.37 E-value=0.0037 Score=60.05 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|.|.|++|+|||++|+.+.+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999864
No 163
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.36 E-value=0.0034 Score=64.69 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=74.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCC--ceEE---------------------------------EEcCccccHH--
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFE--GSCF---------------------------------LENVREESQD-- 65 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~--~~~~---------------------------------~~~~~~~~~~-- 65 (567)
..+.|+|+.|+|||.|++.+++.+.+..+ .+++ +|+++.....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 46899999999999999999987644322 2223 3333221110
Q ss_pred HHHHHHhhcCC-CCCCceEEEEeCCh-hhhh--------ccCcccEEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHH
Q 008394 66 QEESLIESLDW-LTPVCRIIITTRNK-QVLR--------NWGVRKIYEMEALEYHHALELFSRHAFKQN--HPDELSSKA 133 (567)
Q Consensus 66 ~~~~l~~~~~~-~~~~~~ilvTtR~~-~~~~--------~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i 133 (567)
..+.+...+.. ...+..+|+|+... .... .+.....+.+++.+.++-.+++.+.+...+ -++++...|
T Consensus 217 ~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 296 (405)
T TIGR00362 217 TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFI 296 (405)
T ss_pred HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11112222211 12456688877642 2111 122224689999999999999999885432 355578888
Q ss_pred HHHcCCCchHHH
Q 008394 134 VKYAQGVPLALK 145 (567)
Q Consensus 134 ~~~c~glPLai~ 145 (567)
++.+.|.+-.+.
T Consensus 297 a~~~~~~~r~l~ 308 (405)
T TIGR00362 297 AKNIRSNVRELE 308 (405)
T ss_pred HHhcCCCHHHHH
Confidence 888887665433
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.34 E-value=0.00072 Score=57.39 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=43.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHH-------------------------------hccC-CceEEEEcCccccHHH------
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI-------------------------------SSDF-EGSCFLENVREESQDQ------ 66 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~-------------------------------~~~f-~~~~~~~~~~~~~~~~------ 66 (567)
|.|+|++|+|||++|+.+++.+ +..- ++++++|++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 6799999999999999997632 1123 5788888776665543
Q ss_pred -----HHHHHhhcCCCC---CCceEEEEeCCh
Q 008394 67 -----EESLIESLDWLT---PVCRIIITTRNK 90 (567)
Q Consensus 67 -----~~~l~~~~~~~~---~~~~ilvTtR~~ 90 (567)
.+.+...+.... .+..+|.||...
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ccccccceeeecccccccccccceeEEeeCCh
Confidence 555555554332 235666777664
No 165
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00026 Score=60.19 Aligned_cols=40 Identities=33% Similarity=0.440 Sum_probs=31.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEE-EEcCcc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCF-LENVRE 61 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~-~~~~~~ 61 (567)
...|+|.||+||||||+++++.+.+++. |...-+ ...+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 3579999999999999999999998765 776544 444443
No 166
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00041 Score=61.28 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=73.4
Q ss_pred eEEeeCCCCCCCCCC-CCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecC
Q 008394 356 KYLHWHGYPLKSMPS-NICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLR 434 (567)
Q Consensus 356 ~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 434 (567)
+.+++.+..+..+.. .....+...+|+++|.+..+..- ..++.|..|.+.+|+... ..+..-..+++|+.|.+.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~l--p~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNL--PHLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccC--CCccccceEEecCCccee---eccchhhhccccceEEec
Confidence 556666666555444 22456778888888877765332 257777777777776543 122222346677777777
Q ss_pred CCccCCccC--CcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccCh----hhhccCCCcEEecCCCc
Q 008394 435 GSKSLKSLP--AGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS----SIELLLRLEYLDLSDCK 506 (567)
Q Consensus 435 ~~~~~~~~p--~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~ 506 (567)
+|+ +..+. ..+..+|+|++|.+-+|+ ++..+. -+..+++|+.||+.+-.
T Consensus 97 nNs-i~~l~dl~pLa~~p~L~~Ltll~Np----------------------v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNS-IQELGDLDPLASCPKLEYLTLLGNP----------------------VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred Ccc-hhhhhhcchhccCCccceeeecCCc----------------------hhcccCceeEEEEecCcceEeehhhhh
Confidence 776 32221 225566777777776643 332221 25677888888887644
No 167
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.33 E-value=0.00045 Score=65.26 Aligned_cols=41 Identities=22% Similarity=0.051 Sum_probs=35.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEEcCccc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLENVREE 62 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~ 62 (567)
-+.++|+|++|+|||||++++++.+. ++|+..+|+..+.+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er 57 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER 57 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC
Confidence 35899999999999999999999864 379999999877773
No 168
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.31 E-value=0.0003 Score=69.20 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCCchHHHHHHHHHhcccC----CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAVES----KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~----~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|.++.++++.+++.... ..-+++.|+|++|+||||||..+.+.+.
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999997632 2457899999999999999999998764
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00022 Score=59.73 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|+|.|++|+||||+|+++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 170
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=4.5e-05 Score=70.13 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=110.5
Q ss_pred CCeeEEeeCCCCCCC-----CCCCC-CCCCceEEEccCCcc-----------cccchhhhhhccCCcEEecccCcccccc
Q 008394 353 TEVKYLHWHGYPLKS-----MPSNI-CAEQLVFLEVPNSSI-----------EQLWDGMKQHRGKLNQIIHATCKMLIAK 415 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~n~i-----------~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 415 (567)
..+..++++||.+.+ +...+ .-++|+..++++--. .-+.+.+. +||+|+..+||.|..-. .
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAfg~-~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAFGS-E 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeeccccccCc-c
Confidence 456666666665532 11111 245666666665311 11233334 67888888888876432 2
Q ss_pred CCCC--CCCCCCcCCcEEecCCCccCCccC-C-------------cccCCCCCcEEEcCCCCCCCcCCcc----c--cCC
Q 008394 416 TPNP--TLIPHLNKLVILNLRGSKSLKSLP-A-------------GIFNLEFLTTLDLSGCPKLKRLPEI----S--SSN 473 (567)
Q Consensus 416 ~~~~--~~~~~l~~L~~L~l~~~~~~~~~p-~-------------~l~~l~~L~~L~Ls~~~~~~~~~~~----~--~~~ 473 (567)
.+.+ ..+..-+.|.+|.|++|. .+.+. . ...+-|.|++.....|+.-...... . ...
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 2111 123456778888888776 33321 1 2235678888888876543221111 1 127
Q ss_pred CceeeccCccCccc------ChhhhccCCCcEEecCCCccCcc----CcccccCCCCCcEEeccCCCCCcccCcc----c
Q 008394 474 TSCLFLSGTAIEEL------PSSIELLLRLEYLDLSDCKRLKS----LPSSLCKLKSLEILDLSGCSNLQRLPEC----L 539 (567)
Q Consensus 474 L~~L~l~~~~i~~l------p~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~p~~----l 539 (567)
|+++.+..|+|..- -..+..+.+|+.|++..|.++.. +...+..++.|+.|.+..|-+...-... +
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88888888887611 12356678899999998876543 2223455677888888887665332211 1
Q ss_pred C--CCCCcceeccccc
Q 008394 540 G--QLSSLGTLLLEKP 553 (567)
Q Consensus 540 ~--~l~~L~~L~l~~~ 553 (567)
. ..|+|+.|...+|
T Consensus 267 ~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 267 NEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhcCCCccccccchh
Confidence 1 2455555555554
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=4.8e-05 Score=82.34 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCceEEEccCCccccc-chhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCC-ccCCcccCCCC
Q 008394 374 AEQLVFLEVPNSSIEQL-WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLK-SLPAGIFNLEF 451 (567)
Q Consensus 374 ~~~L~~L~l~~n~i~~l-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~ 451 (567)
+|+|+.|.+++-.+..- ......++++|..||+|++.. ....++..+++|++|.+.+-.+.. ..-..++.|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-----~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-----SNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-----cCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 45555555555443321 122333778888888888743 334667788888888887655332 11134678888
Q ss_pred CcEEEcCCCC
Q 008394 452 LTTLDLSGCP 461 (567)
Q Consensus 452 L~~L~Ls~~~ 461 (567)
|++||+|...
T Consensus 222 L~vLDIS~~~ 231 (699)
T KOG3665|consen 222 LRVLDISRDK 231 (699)
T ss_pred CCeeeccccc
Confidence 8888888743
No 172
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.28 E-value=0.0033 Score=69.83 Aligned_cols=140 Identities=14% Similarity=0.210 Sum_probs=83.1
Q ss_pred CCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 2 VGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
.|.++.+++|.+.+.. +-...+-|.++|++|+|||++|+.+++..
T Consensus 456 ~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i 535 (733)
T TIGR01243 456 GGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI 535 (733)
T ss_pred ccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH
Confidence 4677777777776531 11234568999999999999999997532
Q ss_pred -------hccCCceEEEEcCcccc------------HHHHHHHHhhcCCC--CCCceEEEEeCChhhhhcc-----Cccc
Q 008394 47 -------SSDFEGSCFLENVREES------------QDQEESLIESLDWL--TPVCRIIITTRNKQVLRNW-----GVRK 100 (567)
Q Consensus 47 -------~~~f~~~~~~~~~~~~~------------~~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~-----~~~~ 100 (567)
+..-++++++|++.... ......+...+.-. ..+--||.||..++..+.. ..+.
T Consensus 536 ~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~ 615 (733)
T TIGR01243 536 REIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDR 615 (733)
T ss_pred HHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccce
Confidence 12234677887654321 12233344433322 2334456666655433221 2245
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 101 IYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.+.++..+.++-.++|+.+..+.....+ ....+++.+.|.-
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 7888888999999998766543322221 2567777777754
No 173
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.27 E-value=0.0022 Score=65.67 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++||++.++.+...+..+. .|.|.|++|+|||++|+.+...
T Consensus 22 i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred ccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 6899999999988885543 7999999999999999999864
No 174
>PRK06696 uridine kinase; Validated
Probab=97.20 E-value=0.00083 Score=62.93 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.5
Q ss_pred CchHHHHHHHHHhcc-cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 3 GVESIVEEIESLLAV-ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~-~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
-|++.+++|.+.+.. ..+...+|+|.|.+|+||||+|+++.+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 467788888877754 33567899999999999999999999987654
No 175
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0043 Score=64.59 Aligned_cols=138 Identities=15% Similarity=0.221 Sum_probs=80.3
Q ss_pred CchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-----------------------
Q 008394 3 GVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISS----------------------- 48 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~----------------------- 48 (567)
|.++.+.+|.+.+.- +-...+-|.+||++|.|||++|+.+++..+.
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir 517 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIR 517 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHH
Confidence 366666666655421 1145678999999999999999999764322
Q ss_pred --------cCCceEEEEcCccccH-----------HHHHHHHhhcCCCCCCceEEEE---eCChhhhhcc-C---cccEE
Q 008394 49 --------DFEGSCFLENVREESQ-----------DQEESLIESLDWLTPVCRIIIT---TRNKQVLRNW-G---VRKIY 102 (567)
Q Consensus 49 --------~f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~ilvT---tR~~~~~~~~-~---~~~~~ 102 (567)
.=++++|+|.+..... ..+..|...++-......|+|. .|...+-..+ . .+..+
T Consensus 518 ~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~ii 597 (693)
T KOG0730|consen 518 EVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRII 597 (693)
T ss_pred HHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeE
Confidence 2356777664433322 3455555555544444444443 3332222222 2 34567
Q ss_pred EcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCC
Q 008394 103 EMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGV 140 (567)
Q Consensus 103 ~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~gl 140 (567)
.+++=+.+.-.++|+.++-+-.-.+. ...+++++..|.
T Consensus 598 yVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 598 YVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGY 636 (693)
T ss_pred eecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccC
Confidence 77777777888899888755433222 245555555554
No 176
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.14 E-value=0.0048 Score=63.76 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=70.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCc---------------------------------eEEEEcCccccH--HHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEG---------------------------------SCFLENVREESQ--DQE 67 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~---------------------------------~~~~~~~~~~~~--~~~ 67 (567)
..+.|+|+.|+|||+|++.+++.+...... ++.+|+++.... ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q 221 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence 468999999999999999998865432222 233343332211 111
Q ss_pred HHHHhhcCC-CCCCceEEEEeCCh-hh--------hhccCcccEEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHH
Q 008394 68 ESLIESLDW-LTPVCRIIITTRNK-QV--------LRNWGVRKIYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVK 135 (567)
Q Consensus 68 ~~l~~~~~~-~~~~~~ilvTtR~~-~~--------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~ 135 (567)
+.+...++. ...|..||+||... .. ...+.....+++++++.++-.+++++++...+ -++++..-|++
T Consensus 222 eelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~ 301 (445)
T PRK12422 222 EEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIE 301 (445)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 222222211 12456788887542 21 11223335789999999999999998875432 34556676777
Q ss_pred HcCCC
Q 008394 136 YAQGV 140 (567)
Q Consensus 136 ~c~gl 140 (567)
.+.|.
T Consensus 302 ~~~~d 306 (445)
T PRK12422 302 ALSSN 306 (445)
T ss_pred hcCCC
Confidence 76643
No 177
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.13 E-value=0.031 Score=52.17 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHHHhc--c---------CCHHHHHHHHHHHh
Q 008394 101 IYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGCFLY--K---------MEKEVWDSAINKLQ 167 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~~l~--~---------~~~~~w~~~~~~l~ 167 (567)
.++++.-+++|....+.+.+.+.+ -|.+++.+|+++++|.---...+...++ + .+.-+|+-++.++.
T Consensus 180 ~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 180 FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 578899999999999998875543 4677999999999997654444444443 1 25678998887655
Q ss_pred h-----cCchhHHHHHHHHHhcC
Q 008394 168 R-----IHHPSILQILKISYDGL 185 (567)
Q Consensus 168 ~-----~~~~~l~~~l~~s~~~L 185 (567)
. ..+..+.++-..-|+-|
T Consensus 260 ~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 260 RVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 3 23455555555555554
No 178
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.12 E-value=0.0064 Score=59.69 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=69.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH------------------------Hhcc------------CCceEEEEcCcccc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDK------------------------ISSD------------FEGSCFLENVREES 63 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~------------------------~~~~------------f~~~~~~~~~~~~~ 63 (567)
.....++|||++|.|||.+|+.++.. +++. =++++|++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 44578999999999999999999752 2222 26889998665332
Q ss_pred H----------HHH--HHHHhhc----------CC----CCCCceEEEEeCChhhhhc-c-Cc---ccEEEcCCCCHHHH
Q 008394 64 Q----------DQE--ESLIESL----------DW----LTPVCRIIITTRNKQVLRN-W-GV---RKIYEMEALEYHHA 112 (567)
Q Consensus 64 ~----------~~~--~~l~~~~----------~~----~~~~~~ilvTtR~~~~~~~-~-~~---~~~~~l~~L~~~~~ 112 (567)
. .+. ..|.... .| ...+-.||+||...+.... + .. +..+. .=+.++-
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~--lPd~e~R 303 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 303 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeC--CCCHHHH
Confidence 2 111 2333221 12 1345677888877654322 1 11 12332 2356666
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHcCCCch
Q 008394 113 LELFSRHAFKQNHPDELSSKAVKYAQGVPL 142 (567)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~~i~~~c~glPL 142 (567)
.++++.+..+.+-+..-..++++...|-|+
T Consensus 304 ~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 304 IGVVHGIFRDDGVSREDVVKLVDTFPGQPL 333 (413)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHcCCCCCc
Confidence 777776655544444345566666666554
No 179
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.11 E-value=0.0079 Score=66.89 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=81.7
Q ss_pred CCCchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------
Q 008394 1 MVGVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDKISS--------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--------------------- 48 (567)
+.|.++.+++|.+.+... -...+-|.|+|++|+|||++|+.+++....
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~ 259 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEER 259 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHH
Confidence 358899999988876421 123457899999999999999999764321
Q ss_pred ----------cCCceEEEEcCccccH-----------HHHHHHHhhcCCCC-CCceEEE-EeCChh-hhhcc----Cccc
Q 008394 49 ----------DFEGSCFLENVREESQ-----------DQEESLIESLDWLT-PVCRIII-TTRNKQ-VLRNW----GVRK 100 (567)
Q Consensus 49 ----------~f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~-~~~~ilv-TtR~~~-~~~~~----~~~~ 100 (567)
..+.++++|++..... .....+...+.... .+..++| ||.... +...+ .-+.
T Consensus 260 l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~ 339 (733)
T TIGR01243 260 LREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDR 339 (733)
T ss_pred HHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccE
Confidence 2235567776533211 12233333333222 2333444 444332 11111 1134
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCCCCh-HHHHHHHHHcCCCch
Q 008394 101 IYEMEALEYHHALELFSRHAFKQNHPD-ELSSKAVKYAQGVPL 142 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~~~~-~~~~~i~~~c~glPL 142 (567)
.+.+...+.++-.+++........... .....+++.+.|.--
T Consensus 340 ~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 340 EIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 677887888888888886553322211 135678888888653
No 180
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.10 E-value=0.0056 Score=64.97 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=34.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|.+..++.+...+.. .....|.|+|++|+|||++|+.+++.
T Consensus 67 iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 67 IIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred eeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57889999998877643 33357889999999999999999753
No 181
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00021 Score=65.84 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCC--cccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCC
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNS--SIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKL 428 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n--~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 428 (567)
.+..|+.+.+.+..++++.+...+++|++|.+++| ++..=.......+++|++|+++.|+... .........+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 34577777788888888877778889999999999 5554223333367999999999997642 2233345667788
Q ss_pred cEEecCCCccCCccC----CcccCCCCCcEEEcCCC
Q 008394 429 VILNLRGSKSLKSLP----AGIFNLEFLTTLDLSGC 460 (567)
Q Consensus 429 ~~L~l~~~~~~~~~p----~~l~~l~~L~~L~Ls~~ 460 (567)
..|++.+|.-.. +- ..+.-+++|.+||-...
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 888988887333 22 12445788888876553
No 182
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.00021 Score=65.89 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=123.0
Q ss_pred CCCceEEEccCCcccc-----cchhhhhhccCCcEEecccCccccc--cC-----CCCCCCCCCcCCcEEecCCCccCCc
Q 008394 374 AEQLVFLEVPNSSIEQ-----LWDGMKQHRGKLNQIIHATCKMLIA--KT-----PNPTLIPHLNKLVILNLRGSKSLKS 441 (567)
Q Consensus 374 ~~~L~~L~l~~n~i~~-----l~~~~~~~l~~L~~L~l~~~~~~~~--~~-----~~~~~~~~l~~L~~L~l~~~~~~~~ 441 (567)
+..++.+++|+|.|.. +.+.+. +-.+|+..+++.-..-.. .. -....+..||+|+..+|++|.+-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 6789999999998864 455555 667888888876421100 00 0012345899999999999987766
Q ss_pred cCC----cccCCCCCcEEEcCCCCCCCcCCc----------------cccCCCceeeccCccCcccChh-----hhccCC
Q 008394 442 LPA----GIFNLEFLTTLDLSGCPKLKRLPE----------------ISSSNTSCLFLSGTAIEELPSS-----IELLLR 496 (567)
Q Consensus 442 ~p~----~l~~l~~L~~L~Ls~~~~~~~~~~----------------~~~~~L~~L~l~~~~i~~lp~~-----~~~l~~ 496 (567)
.|+ .+++-..|.+|.+++|- ++.+.. ...+.|+......|++...|.. +..=.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 664 45567889999998863 222211 1122788888888988866643 222257
Q ss_pred CcEEecCCCccCcc-----CcccccCCCCCcEEeccCCCCCcc----cCcccCCCCCcceeccccccccc
Q 008394 497 LEYLDLSDCKRLKS-----LPSSLCKLKSLEILDLSGCSNLQR----LPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 497 L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
|+.+.+..|.+... +-.++..+.+|+.|++..|..... +...+..++.|+.|.+..|.++.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 88998888764322 112356778999999999876532 33446778889999999998754
No 183
>PRK07667 uridine kinase; Provisional
Probab=97.01 E-value=0.0018 Score=59.07 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=32.7
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
.+++.+.+..-.+...+|+|.|.+|+||||+|..+.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 355666665544555799999999999999999999887543
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0085 Score=61.80 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHhcccC----------CCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAVES----------KDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~----------~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
|.++.+++|.+++..-. ...+=|.+||++|.|||.||++++.
T Consensus 194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg 245 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG 245 (802)
T ss_pred ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh
Confidence 78889999988886521 2356799999999999999999964
No 185
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.078 Score=53.31 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=39.5
Q ss_pred CCCchHHHHHHHHHhccc--CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 1 MVGVESIVEEIESLLAVE--SKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+.+|+++++++...|... .....-+.|+|.+|.|||+.++.+.+++++.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 468999999999888651 1222349999999999999999999987655
No 186
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.99 E-value=0.00083 Score=75.29 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=38.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++||+++++++.+.|.... ..-+.++|++|+|||++|..+++.+.
T Consensus 181 ~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 181 VIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999996543 23567999999999999999998764
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0029 Score=68.21 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=66.6
Q ss_pred CCCchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHH----------------------------
Q 008394 1 MVGVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDK---------------------------- 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~---------------------------- 45 (567)
++|-++.++.+.+.+.... ....++...|+.|||||.||+++++.
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa 572 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA 572 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC
Confidence 4789999999988886522 34568889999999999999999642
Q ss_pred ----------------HhccCCceEEEEcCccccHHHHHHHHhhcCCC----CC-------CceEEEEeCCh
Q 008394 46 ----------------ISSDFEGSCFLENVREESQDQEESLIESLDWL----TP-------VCRIIITTRNK 90 (567)
Q Consensus 46 ----------------~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~-------~~~ilvTtR~~ 90 (567)
++..-..++.+|.+.....+..+.+.+.+..+ +. .+-||.||.-.
T Consensus 573 PPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 573 PPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred CCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 22233346678889999999999999998765 22 34566676643
No 188
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0039 Score=56.70 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=64.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccH-----------------HHHHHHHhhcCCCCCCce
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQ-----------------DQEESLIESLDWLTPVCR 82 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~ 82 (567)
++..+|+|.|.+|+||||+|+++++.++......+-.|+.-.... -.|+.+.+.+.....|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 456799999999999999999999998866444433221111110 234444444433334443
Q ss_pred EEE-------EeCChhhhhccCcccEEEcC---CCCHHHHHHHHHHhhccCCCChH-HHHHHHH
Q 008394 83 III-------TTRNKQVLRNWGVRKIYEME---ALEYHHALELFSRHAFKQNHPDE-LSSKAVK 135 (567)
Q Consensus 83 ilv-------TtR~~~~~~~~~~~~~~~l~---~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~ 135 (567)
|-+ -||... ...+....++-++ +|.++...+++.-+++-+.+.+. +.+.|.+
T Consensus 86 v~~P~yd~~~~~r~~~-~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~R 148 (218)
T COG0572 86 VDLPVYDYKTHTREPE-TIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKR 148 (218)
T ss_pred ccccccchhcccccCC-ccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHH
Confidence 321 233321 1122334455555 47778888888877776555442 3344333
No 189
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.98 E-value=0.0045 Score=67.96 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=36.8
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||++++.++.+.|..... .-+.|+|++|+|||++|+.+++.+
T Consensus 188 liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999966322 345789999999999999998764
No 190
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.014 Score=62.73 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHh---cc-------cCCCeEEEEEEcCCCChHHHHHHHHHH---------------------------
Q 008394 2 VGVESIVEEIESLL---AV-------ESKDVYCLGIWGIGGIGKTTIARAIFD--------------------------- 44 (567)
Q Consensus 2 vGr~~~~~~l~~~L---~~-------~~~~~~~i~I~G~gGvGKTtLa~~~~~--------------------------- 44 (567)
.|-|+..++|.+.. .. +..-++=|.|+|++|.|||-||++++-
T Consensus 314 AG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr 393 (774)
T KOG0731|consen 314 AGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVR 393 (774)
T ss_pred cCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHH
Confidence 56677666666554 32 113356799999999999999999952
Q ss_pred ----HHhccCCceEEEEcCccccH---------------HHHHHHHhhcCCCCCCceE--EEEeCChhhhhcc-----Cc
Q 008394 45 ----KISSDFEGSCFLENVREESQ---------------DQEESLIESLDWLTPVCRI--IITTRNKQVLRNW-----GV 98 (567)
Q Consensus 45 ----~~~~~f~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~i--lvTtR~~~~~~~~-----~~ 98 (567)
..+..=+++++++.+..... ..+..|....+-...++.| +-+|+..++.+.- .-
T Consensus 394 ~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRf 473 (774)
T KOG0731|consen 394 DLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRF 473 (774)
T ss_pred HHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCcc
Confidence 12344567888875443222 3345555444444333433 3345554443321 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCC---ChHHHHHHHHHcCCCchHHH
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNH---PDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~---~~~~~~~i~~~c~glPLai~ 145 (567)
+..+.++.=+...-.++|.-++..... +.++++ ++...-|.+=|..
T Consensus 474 dr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 474 DRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred ccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHH
Confidence 456777766777777888877754433 233666 8888888885543
No 191
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0091 Score=54.64 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
|.+-..+++++...- +-+..+-|.+||++|.|||.||+++++.
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 456666666665531 2255678999999999999999999764
No 192
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.013 Score=62.04 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=72.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCC--ceEE---------------------------------EEcCccccH-HH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFE--GSCF---------------------------------LENVREESQ-DQ 66 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~--~~~~---------------------------------~~~~~~~~~-~~ 66 (567)
..+.|+|..|+|||.|++.+++.+...+. .+.+ +|+++.... ..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 35899999999999999999987654221 1222 233322111 11
Q ss_pred -HHHHHhhcCC-CCCCceEEEEeCChh---------hhhccCcccEEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHH
Q 008394 67 -EESLIESLDW-LTPVCRIIITTRNKQ---------VLRNWGVRKIYEMEALEYHHALELFSRHAFKQN--HPDELSSKA 133 (567)
Q Consensus 67 -~~~l~~~~~~-~~~~~~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i 133 (567)
-+.+...++. ...|..|||||+..- ....+...-++++++.+.+.-.+++.+++.... -++++.+-|
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yL 474 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI 474 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1222222211 134667888887631 111223345789999999999999999875432 345577777
Q ss_pred HHHcCCCc
Q 008394 134 VKYAQGVP 141 (567)
Q Consensus 134 ~~~c~glP 141 (567)
++++.+..
T Consensus 475 a~r~~rnv 482 (617)
T PRK14086 475 ASRISRNI 482 (617)
T ss_pred HHhccCCH
Confidence 77776553
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.035 Score=55.30 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=79.3
Q ss_pred CC-chHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh-cc--------------------CCceEEEE--
Q 008394 2 VG-VESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS-SD--------------------FEGSCFLE-- 57 (567)
Q Consensus 2 vG-r~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~--------------------f~~~~~~~-- 57 (567)
+| -+..++.+.+.+..+ .-.....++|+.|+||||+|..+.+.+- .. ++...++.
T Consensus 8 ~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 8 TALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 45 667778888888433 2345679999999999999999987642 11 22222221
Q ss_pred -------------------------------cCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEc
Q 008394 58 -------------------------------NVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEM 104 (567)
Q Consensus 58 -------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l 104 (567)
..........+.|.+.+.--..++.+|.+|.+.. +.... .....+++
T Consensus 87 ~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~ 166 (329)
T PRK08058 87 GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEF 166 (329)
T ss_pred cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeC
Confidence 1111111333444444444456666776766543 22222 22357999
Q ss_pred CCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHH
Q 008394 105 EALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 145 (567)
.++++++..+.+... +.....+..++.. .|-|....
T Consensus 167 ~~~~~~~~~~~L~~~----gi~~~~~~~l~~~-~g~~~~A~ 202 (329)
T PRK08058 167 RPLPPESLIQRLQEE----GISESLATLLAGL-TNSVEEAL 202 (329)
T ss_pred CCCCHHHHHHHHHHc----CCChHHHHHHHHH-cCCHHHHH
Confidence 999999998888754 1222234444444 45565433
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.0076 Score=66.85 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHhccc------C-CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVE------S-KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~------~-~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.++.++.|.+.+... . ....++.++|+.|+|||++|+.+++.+
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 478889999888887642 1 124578999999999999999998754
No 195
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.90 E-value=0.0014 Score=58.91 Aligned_cols=37 Identities=32% Similarity=0.694 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+|.|.|+.|+||||+|+.+++.+...+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3459999999999999999999999887777777774
No 196
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.90 E-value=0.002 Score=65.37 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--cCCceEEEEcC
Q 008394 2 VGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS--DFEGSCFLENV 59 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--~f~~~~~~~~~ 59 (567)
++.++.++.+...|... +.|.++|++|+|||++|+++++.+.. .|..+.|+..-
T Consensus 178 ~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH 233 (459)
T PRK11331 178 FIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH 233 (459)
T ss_pred cCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence 56677888888888543 37889999999999999999988743 45555565543
No 197
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.88 E-value=0.0014 Score=68.02 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCCchHHHHHHHHHhcc----cCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 1 MVGVESIVEEIESLLAV----ESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++|.++.+++|.+.|.. -...-+++.++|++|+||||||+.+.+.+..
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 58999999999998833 2344579999999999999999999987643
No 198
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.86 E-value=0.022 Score=63.93 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=36.2
Q ss_pred CCCchHHHHHHHHHhccc-------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVE-------SKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.++.++.+.+.+... +....++.++|+.|+|||.+|+.+.+.+
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999998887531 1234579999999999999999887653
No 199
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.81 E-value=0.0077 Score=66.67 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=73.6
Q ss_pred CCCchHHHHHHHHHhccc----CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC--------------------------
Q 008394 1 MVGVESIVEEIESLLAVE----SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-------------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~----~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-------------------------- 50 (567)
.+|.++.+++|.+++... ......+.++|++|+||||+|+.++..+...|
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~ 403 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP 403 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCC
Confidence 378999999999888641 12345899999999999999999986432221
Q ss_pred -------------CceEEEEcCccccHHH----HHHHHhhcCCC--------------C-CCceEEEEeCChhhhhcc-C
Q 008394 51 -------------EGSCFLENVREESQDQ----EESLIESLDWL--------------T-PVCRIIITTRNKQVLRNW-G 97 (567)
Q Consensus 51 -------------~~~~~~~~~~~~~~~~----~~~l~~~~~~~--------------~-~~~~ilvTtR~~~~~~~~-~ 97 (567)
..++++|.+.....++ .+.+.+.+.-. + ...-+|.|+..-.+...+ .
T Consensus 404 G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~ 483 (784)
T PRK10787 404 GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLD 483 (784)
T ss_pred cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhc
Confidence 2234555444333221 34444433210 1 223344455433222221 2
Q ss_pred cccEEEcCCCCHHHHHHHHHHhh
Q 008394 98 VRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
...++++.+++.++-.++.+++.
T Consensus 484 R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 484 RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceeeeecCCCCHHHHHHHHHHhh
Confidence 23578999999999999988876
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.064 Score=52.72 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh------------------ccCCceEEEE-cCc-------
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS------------------SDFEGSCFLE-NVR------- 60 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~------------------~~f~~~~~~~-~~~------- 60 (567)
..+.+.+.+..+ .-...+.++|+.|+||+++|..+.+.+- ...+...|+. ...
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 445566666322 2345699999999999999999987531 1233444552 110
Q ss_pred -cccHHHHHHHHh--------------------------------hcCCCCCCceEEEEeCCh-hhhhccC-cccEEEcC
Q 008394 61 -EESQDQEESLIE--------------------------------SLDWLTPVCRIIITTRNK-QVLRNWG-VRKIYEME 105 (567)
Q Consensus 61 -~~~~~~~~~l~~--------------------------------~~~~~~~~~~ilvTtR~~-~~~~~~~-~~~~~~l~ 105 (567)
+...++...+.+ .+.--..++.+|++|... .+..... .-..+.+.
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~ 170 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 (319)
T ss_pred ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCC
Confidence 111233333322 111113455566666543 3333322 22478999
Q ss_pred CCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
+.+.+++.+.+... +.+...+..++..++|.|+....++
T Consensus 171 ~~~~~~~~~~L~~~----~~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 171 LPPAHEALAWLLAQ----GVSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CcCHHHHHHHHHHc----CCChHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999888753 2223346788999999998665544
No 201
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.04 Score=55.46 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=69.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCce--EE--------------------------------EEcCccccH--H
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGS--CF--------------------------------LENVREESQ--D 65 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~--~~--------------------------------~~~~~~~~~--~ 65 (567)
...+.|||..|.|||-|++++.+.+.+..+.. +. +|+++-... .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~ 192 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER 192 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChh
Confidence 56899999999999999999998765555422 22 222221111 1
Q ss_pred HHHHHHhhcC-CCCCCceEEEEeCChh---------hhhccCcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHH
Q 008394 66 QEESLIESLD-WLTPVCRIIITTRNKQ---------VLRNWGVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKA 133 (567)
Q Consensus 66 ~~~~l~~~~~-~~~~~~~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i 133 (567)
..+++...++ ....|..||+|++..- ....+...-++++.+.+.+...+++.+++... .-++++..-+
T Consensus 193 ~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~l 272 (408)
T COG0593 193 TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFL 272 (408)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1122222221 1245558888885431 12222334589999999999999999976433 3455555555
Q ss_pred HHHc
Q 008394 134 VKYA 137 (567)
Q Consensus 134 ~~~c 137 (567)
++..
T Consensus 273 a~~~ 276 (408)
T COG0593 273 AKRL 276 (408)
T ss_pred HHHh
Confidence 5543
No 202
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.78 E-value=0.0033 Score=62.70 Aligned_cols=42 Identities=19% Similarity=0.019 Sum_probs=35.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc-cCCceEEEEcCcccc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS-DFEGSCFLENVREES 63 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~ 63 (567)
-+.++|+|++|+|||||++.+++.+.. +|+..+|+..+.+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~ 210 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP 210 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC
Confidence 458999999999999999999998754 599999998886643
No 203
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.77 E-value=0.0026 Score=55.09 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+|-|.|.+|+||||||+++.+++.+.-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58999999999999999999999988888888876
No 204
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.76 E-value=0.0012 Score=55.71 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|+|.|++|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 205
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0015 Score=68.36 Aligned_cols=50 Identities=34% Similarity=0.450 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHhcc----cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC
Q 008394 2 VGVESIVEEIESLLAV----ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE 51 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~ 51 (567)
+|.++.+++|.+.++- ++-+-++++.+|++|||||.+|+.|+..+...|.
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 6889999999988865 2234579999999999999999999988766553
No 206
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.006 Score=61.82 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=69.2
Q ss_pred CchHHHHHHH---HHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHH------------------------H---
Q 008394 3 GVESIVEEIE---SLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFD------------------------K--- 45 (567)
Q Consensus 3 Gr~~~~~~l~---~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~------------------------~--- 45 (567)
|.|+..+||. +.|.... .-++=|.++|++|.|||-||++++- +
T Consensus 308 G~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRd 387 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRD 387 (752)
T ss_pred ChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHH
Confidence 5666665555 4553311 2245699999999999999999941 2
Q ss_pred ----HhccCCceEEEEcCccccH-----------HHHHHHHhhcCCCCC--CceEEEEeCChhhhhcc-----CcccEEE
Q 008394 46 ----ISSDFEGSCFLENVREESQ-----------DQEESLIESLDWLTP--VCRIIITTRNKQVLRNW-----GVRKIYE 103 (567)
Q Consensus 46 ----~~~~f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~--~~~ilvTtR~~~~~~~~-----~~~~~~~ 103 (567)
.+..=+|++|+|.+...-. ..+..|...+.-+.+ |-.||-.|..++..+.. .-+..+.
T Consensus 388 LF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 388 LFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVT 467 (752)
T ss_pred HHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEe
Confidence 3445689999986553322 445666666554433 33344445555544332 1123344
Q ss_pred cCCCC---HHHHHHHHHHhhccCCC
Q 008394 104 MEALE---YHHALELFSRHAFKQNH 125 (567)
Q Consensus 104 l~~L~---~~~~~~l~~~~~~~~~~ 125 (567)
++.=+ ..+..++...+....++
T Consensus 468 Vp~PDv~GR~eIL~~yl~ki~~~~~ 492 (752)
T KOG0734|consen 468 VPLPDVRGRTEILKLYLSKIPLDED 492 (752)
T ss_pred cCCCCcccHHHHHHHHHhcCCcccC
Confidence 43322 44555555555544433
No 207
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00079 Score=62.09 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=19.8
Q ss_pred CCCCCcCCcEEecCCC--ccCCccCCcccCCCCCcEEEcCCC
Q 008394 421 LIPHLNKLVILNLRGS--KSLKSLPAGIFNLEFLTTLDLSGC 460 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~--~~~~~~p~~l~~l~~L~~L~Ls~~ 460 (567)
.+..+++|+.|.++.| .....++.....+|+|++|++++|
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3445555555555555 333333333334455555555554
No 208
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.026 Score=51.64 Aligned_cols=137 Identities=19% Similarity=0.276 Sum_probs=80.7
Q ss_pred CchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHH--------------------------
Q 008394 3 GVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDK-------------------------- 45 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~-------------------------- 45 (567)
|.+..+++|.+.+.-. -...+-+.++|++|.|||-||+.+++.
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvr 230 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVR 230 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHH
Confidence 4677888888776421 145678999999999999999999862
Q ss_pred -----HhccCCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhcc-----Ccc
Q 008394 46 -----ISSDFEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRNW-----GVR 99 (567)
Q Consensus 46 -----~~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~-----~~~ 99 (567)
.++|-+.++|.+.+.+.-. ...-+|...+.-+ .+.-+||..|.--++.+.. ..+
T Consensus 231 elfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgrid 310 (404)
T KOG0728|consen 231 ELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRID 310 (404)
T ss_pred HHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccc
Confidence 2445677888775544332 2222333333322 3455677666544443331 224
Q ss_pred cEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCC
Q 008394 100 KIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQG 139 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~g 139 (567)
..++.++=+++.-.++++-+..+-.-... -.+.|+++.-|
T Consensus 311 rkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 311 RKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred ccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 56778877777777777655432221111 14556665444
No 209
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.016 Score=61.53 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=76.7
Q ss_pred CchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHH-----------------------------
Q 008394 3 GVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIF----------------------------- 43 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~----------------------------- 43 (567)
|.++.+.+|.+-+.- +-....=|.+||++|.|||-+|++|+
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~ 755 (953)
T KOG0736|consen 676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVRE 755 (953)
T ss_pred CHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHH
Confidence 567777777765532 11224469999999999999999995
Q ss_pred --HHHhccCCceEEEEcCccccH-------------HHHHHHHhhcCCCCC----CceEEEEeCChhhhhc--c---Ccc
Q 008394 44 --DKISSDFEGSCFLENVREESQ-------------DQEESLIESLDWLTP----VCRIIITTRNKQVLRN--W---GVR 99 (567)
Q Consensus 44 --~~~~~~f~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~----~~~ilvTtR~~~~~~~--~---~~~ 99 (567)
++.++.-+|++|.|.+..... .....|.+.+..... +-=||=.|.-++..+. + .-+
T Consensus 756 VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFD 835 (953)
T KOG0736|consen 756 VFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFD 835 (953)
T ss_pred HHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccc
Confidence 234667799999986554432 445555555544432 1123333444443332 1 123
Q ss_pred cEEEcCCCCHHHHHH-HHHHhh--ccCCCChHHHHHHHHHcC
Q 008394 100 KIYEMEALEYHHALE-LFSRHA--FKQNHPDELSSKAVKYAQ 138 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~-l~~~~~--~~~~~~~~~~~~i~~~c~ 138 (567)
.-+.+.+=+++++.. +++... |+-+..- -..+|+++|.
T Consensus 836 KLvyvG~~~d~esk~~vL~AlTrkFkLdedV-dL~eiAk~cp 876 (953)
T KOG0736|consen 836 KLVYVGPNEDAESKLRVLEALTRKFKLDEDV-DLVEIAKKCP 876 (953)
T ss_pred eeEEecCCccHHHHHHHHHHHHHHccCCCCc-CHHHHHhhCC
Confidence 456676655555543 333322 2222211 2678888884
No 210
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.017 Score=61.29 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=75.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH-------------------------------hccCCceEEEEcCccccH----
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI-------------------------------SSDFEGSCFLENVREESQ---- 64 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~-------------------------------~~~f~~~~~~~~~~~~~~---- 64 (567)
...+.+.++|++|.|||.||++++... +..=++++|+|.+.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~ 353 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC
Confidence 345689999999999999999998632 122367788875543332
Q ss_pred -------HHHHHHHhhcCCCCCCce--EEEEeCChhhhhcc-----CcccEEEcCCCCHHHHHHHHHHhhccCCCC---h
Q 008394 65 -------DQEESLIESLDWLTPVCR--IIITTRNKQVLRNW-----GVRKIYEMEALEYHHALELFSRHAFKQNHP---D 127 (567)
Q Consensus 65 -------~~~~~l~~~~~~~~~~~~--ilvTtR~~~~~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~---~ 127 (567)
.....+...+......+. ||-+|..+...+.. .-+..+.+++-+.++..++|..+......+ +
T Consensus 354 ~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~ 433 (494)
T COG0464 354 SEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAED 433 (494)
T ss_pred CCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhh
Confidence 344445555443334333 44445544433321 224578889999999999999998754442 2
Q ss_pred HHHHHHHHHcCC
Q 008394 128 ELSSKAVKYAQG 139 (567)
Q Consensus 128 ~~~~~i~~~c~g 139 (567)
...+.+++...|
T Consensus 434 ~~~~~l~~~t~~ 445 (494)
T COG0464 434 VDLEELAEITEG 445 (494)
T ss_pred hhHHHHHHHhcC
Confidence 245666666555
No 211
>PRK07261 topology modulation protein; Provisional
Probab=96.68 E-value=0.0014 Score=58.48 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=25.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh---ccCCceEEE
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS---SDFEGSCFL 56 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~---~~f~~~~~~ 56 (567)
.|+|+|++|+||||||+++.+... -+.+...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 589999999999999999987642 234445553
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.66 E-value=0.0021 Score=72.08 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++||+.++.++.+.|.... ..-+.++|++|+|||++|..+.+.+.+
T Consensus 180 vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 5899999999999996543 235779999999999999999988643
No 213
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.65 E-value=0.007 Score=57.59 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=49.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccHHHHHHHHhhcCC-CCCCceEEEEeCChh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQDQEESLIESLDW-LTPVCRIIITTRNKQ 91 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ilvTtR~~~ 91 (567)
+-+.++|.|.+|+|||||++.++++++.+|+..+++..+.+...+.-+-+.+.... .-..+.+++.|-++.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~ 139 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEP 139 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCC
Confidence 34689999999999999999999999888888888877766665444433333221 124455666665553
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.11 Score=51.18 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=77.5
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC--cccc
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV--REES 63 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~--~~~~ 63 (567)
.-+.+.+.+..+ .-...+.++|+.|+||+++|..+.+.+-. .-+...++.-. ....
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 345566666332 22457889999999999999999875411 11223333211 1111
Q ss_pred HHHHHHH--------------------------------HhhcCCCCCCceEEEEeCCh-hhhhccC-cccEEEcCCCCH
Q 008394 64 QDQEESL--------------------------------IESLDWLTPVCRIIITTRNK-QVLRNWG-VRKIYEMEALEY 109 (567)
Q Consensus 64 ~~~~~~l--------------------------------~~~~~~~~~~~~ilvTtR~~-~~~~~~~-~~~~~~l~~L~~ 109 (567)
.++..++ .+.+.--.+++.+|++|.+. .+..... .-..+.+.++++
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~ 168 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEE 168 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCH
Confidence 2233222 22222223455566666554 3333322 234799999999
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHH
Q 008394 110 HHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALK 145 (567)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 145 (567)
+++.+.+...... ....+...++.++|.|+.+.
T Consensus 169 ~~~~~~L~~~~~~---~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 169 QQALDWLQAQSSA---EISEILTALRINYGRPLLAL 201 (325)
T ss_pred HHHHHHHHHHhcc---ChHHHHHHHHHcCCCHHHHH
Confidence 9999999876422 22235677888999996443
No 215
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.62 E-value=0.0019 Score=59.07 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
+|+|.|++|+||||+|+++...+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998864
No 216
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.03 Score=56.88 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE----------------------------------cCccccH-
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE----------------------------------NVREESQ- 64 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~----------------------------------~~~~~~~- 64 (567)
..+..+.+.|++|+|||+||.+++.. ..|+.+-.++ ++....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc
Confidence 45667999999999999999999754 5666554432 2211111
Q ss_pred ---------HHHHHHHhhcCCCC-CCc--eEEEEeCChhhhhccCc----ccEEEcCCCCH-HHHHHHHHHhh-ccCCCC
Q 008394 65 ---------DQEESLIESLDWLT-PVC--RIIITTRNKQVLRNWGV----RKIYEMEALEY-HHALELFSRHA-FKQNHP 126 (567)
Q Consensus 65 ---------~~~~~l~~~~~~~~-~~~--~ilvTtR~~~~~~~~~~----~~~~~l~~L~~-~~~~~l~~~~~-~~~~~~ 126 (567)
-.++.|.-.+.... .|- -|+-||....+...|+- +..+.++-++. ++..+.+...- +.++..
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~ 693 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSDDEV 693 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCcchh
Confidence 22233333332222 233 34556777778777743 35788998887 78888877654 444444
Q ss_pred hHHHHHHHHHc
Q 008394 127 DELSSKAVKYA 137 (567)
Q Consensus 127 ~~~~~~i~~~c 137 (567)
+..+++...+|
T Consensus 694 ~~~~~~~~~~~ 704 (744)
T KOG0741|consen 694 RAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHhccc
Confidence 44566666655
No 217
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.62 E-value=0.051 Score=61.37 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=36.5
Q ss_pred CCCchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|.+..++.+.+.+.... ....++.++|+.|+|||++|+.+.+.
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999998886521 12457889999999999999999864
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.089 Score=52.23 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=40.1
Q ss_pred CCCceEEEEeCC-hhhhhcc-CcccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 78 TPVCRIIITTRN-KQVLRNW-GVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 78 ~~~~~ilvTtR~-~~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
.+++.+|.+|.+ ..+.... ..-..+.+.+++.++..+.+.... .++ ...++..++|.|.....+.
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh--HHHHHHHcCCCHHHHHHHH
Confidence 344444444444 4444332 223578999999999999998751 122 2346788999997555443
No 219
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.61 E-value=0.021 Score=62.89 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=36.3
Q ss_pred CCCchHHHHHHHHHhccc-------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVE-------SKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|-++.++.|.+.+... ......+.++|++|+|||++|+.+.+.+
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999988887631 1224579999999999999999997753
No 220
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.60 E-value=0.0022 Score=54.34 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=33.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcc-----CCceEEEEcCccc-cHHHHHHHHhhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSD-----FEGSCFLENVREE-SQDQEESLIESL 74 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~-~~~~~~~l~~~~ 74 (567)
.+.+.|+|.+|+|||++++++.+..... -..++|+...... ...-+..+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 62 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEAL 62 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886543 3445566544333 234455555544
No 221
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.60 E-value=0.0085 Score=56.26 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=44.5
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccHHHHHHHHh
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQDQEESLIE 72 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~ 72 (567)
..|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|++.- ....+.+..+..
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~ 72 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAG 72 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHh
Confidence 445666643334457999999999999999999988765556677888765 444455555443
No 222
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.58 E-value=0.0037 Score=58.80 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+...+|+|.|+.|+|||||++.+...++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999887654
No 223
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.54 E-value=0.0031 Score=71.04 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++||+.++.++.+.|.... ..-+.++|++|+|||++|..+.+++.+
T Consensus 175 ~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5899999999999996543 235678999999999999999988644
No 224
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.51 E-value=0.00011 Score=71.66 Aligned_cols=203 Identities=21% Similarity=0.198 Sum_probs=103.5
Q ss_pred CCCCeeEEeeCCCC-CCCCC--C-CCCCCCceEEEccCC-ccccc-chhhhhhccCCcEEecccCccccccCCCCCCCCC
Q 008394 351 RFTEVKYLHWHGYP-LKSMP--S-NICAEQLVFLEVPNS-SIEQL-WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPH 424 (567)
Q Consensus 351 ~~~~L~~L~l~~~~-~~~l~--~-~~~~~~L~~L~l~~n-~i~~l-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 424 (567)
.++++++|.+.||. ++.-. + ......|+.|++..| .+++. .+.+...+++|++|++++|..+. .......+.+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~-~~gv~~~~rG 240 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS-GNGVQALQRG 240 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh-cCcchHHhcc
Confidence 45688888888875 22111 1 113567888888885 55543 33355589999999999998665 3222233445
Q ss_pred CcCCcEEecCCCccCCc--------------------------cC--CcccCCCCCcEEEcCCCCCCCcCCccc----cC
Q 008394 425 LNKLVILNLRGSKSLKS--------------------------LP--AGIFNLEFLTTLDLSGCPKLKRLPEIS----SS 472 (567)
Q Consensus 425 l~~L~~L~l~~~~~~~~--------------------------~p--~~l~~l~~L~~L~Ls~~~~~~~~~~~~----~~ 472 (567)
+..++.+.+.+|.-.+. .. ..-..+..||+|+.++|...+..+-.. ..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 56666666666541110 00 000123455666666655443332211 12
Q ss_pred CCceeeccCcc-CcccC--hhhhccCCCcEEecCCCccCcc--CcccccCCCCCcEEeccCCCCCccc-----CcccCCC
Q 008394 473 NTSCLFLSGTA-IEELP--SSIELLLRLEYLDLSDCKRLKS--LPSSLCKLKSLEILDLSGCSNLQRL-----PECLGQL 542 (567)
Q Consensus 473 ~L~~L~l~~~~-i~~lp--~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~-----p~~l~~l 542 (567)
+|+.|-+++++ ++..- .-=.+...|+.+++.+|....+ +...-.+++.|+.+.+++|...... ...-..+
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 55555555543 22111 0012345566666655543322 2222345566777777666554332 1222345
Q ss_pred CCcceecccccc
Q 008394 543 SSLGTLLLEKPI 554 (567)
Q Consensus 543 ~~L~~L~l~~~~ 554 (567)
..|..|.+++|.
T Consensus 401 ~~l~~lEL~n~p 412 (483)
T KOG4341|consen 401 EGLEVLELDNCP 412 (483)
T ss_pred cccceeeecCCC
Confidence 556666666665
No 225
>PRK04040 adenylate kinase; Provisional
Probab=96.49 E-value=0.0029 Score=57.29 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=25.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEG 52 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~ 52 (567)
.+|+|+|++|+||||+++.+.+.+...+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 589999999999999999999887433443
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.48 E-value=0.0028 Score=54.19 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=27.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..+.|+|++|+||||+|+.+...+......++.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47999999999999999999988765553344443
No 227
>PTZ00301 uridine kinase; Provisional
Probab=96.48 E-value=0.0045 Score=56.99 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
..+|+|.|.+|+||||+|+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 35899999999999999999998875444
No 228
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.47 E-value=0.021 Score=53.01 Aligned_cols=75 Identities=19% Similarity=0.415 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHhcc--cCCCeEEEEEEcCCCChHHHHHHHHHHH-------------------------Hh-ccCCc
Q 008394 1 MVGVESIVEEIESLLAV--ESKDVYCLGIWGIGGIGKTTIARAIFDK-------------------------IS-SDFEG 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGvGKTtLa~~~~~~-------------------------~~-~~f~~ 52 (567)
++|.|++++.|.+=-.. ......-+.+||..|.|||++++.+.+. ++ ..+..
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kF 108 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKF 108 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCE
Confidence 57888888887643322 2233457889999999999999999652 12 34778
Q ss_pred eEEEEcCc-cccHHHHHHHHhhcC
Q 008394 53 SCFLENVR-EESQDQEESLIESLD 75 (567)
Q Consensus 53 ~~~~~~~~-~~~~~~~~~l~~~~~ 75 (567)
++|+|++. +........|...+.
T Consensus 109 Ilf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 109 ILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred EEEecCCCCCCCcHHHHHHHHHhc
Confidence 88888765 333355556666554
No 229
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.27 Score=48.36 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=79.2
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh--------------------ccCCceEEEEcC---cccc
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS--------------------SDFEGSCFLENV---REES 63 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~--------------------~~f~~~~~~~~~---~~~~ 63 (567)
.-+.+.+.+..+ .-...+.++|+.|+||+++|..+.+.+- ...+...|+.-. ....
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 344566665322 2345799999999999999999977531 123334444321 1122
Q ss_pred HHHHHHHH--------------------------------hhcCCCCCCceEEEEeCCh-hhhhccC-cccEEEcCCCCH
Q 008394 64 QDQEESLI--------------------------------ESLDWLTPVCRIIITTRNK-QVLRNWG-VRKIYEMEALEY 109 (567)
Q Consensus 64 ~~~~~~l~--------------------------------~~~~~~~~~~~ilvTtR~~-~~~~~~~-~~~~~~l~~L~~ 109 (567)
.++...+. +.+.--.+++.+|++|.+. .+..... .-..+.+.++++
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~ 169 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPST 169 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCH
Confidence 23333322 2222223445555555544 4444332 224789999999
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 110 HHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
+++.+.+.... .. .+..+++.++|.|+....+.
T Consensus 170 ~~~~~~L~~~~----~~--~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 170 AQAMQWLKGQG----IT--VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred HHHHHHHHHcC----Cc--hHHHHHHHcCCCHHHHHHHh
Confidence 99999987642 11 24577899999998766553
No 230
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.42 E-value=0.0052 Score=51.67 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++.+++.+.+...-..-.+|.+.|.-|+||||+++.+.+.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555554322333599999999999999999999875
No 231
>PRK00625 shikimate kinase; Provisional
Probab=96.42 E-value=0.0026 Score=56.62 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|.|+||+|+||||+++.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988753
No 232
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.034 Score=58.56 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCchHHHHHHHHHhcc---cC-------CCeEEEEEEcCCCChHHHHHHHHHH---------------------------
Q 008394 2 VGVESIVEEIESLLAV---ES-------KDVYCLGIWGIGGIGKTTIARAIFD--------------------------- 44 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~---~~-------~~~~~i~I~G~gGvGKTtLa~~~~~--------------------------- 44 (567)
.|.|+.++++.+.+.- .. .-++-|.++|++|.|||.||+++.-
T Consensus 153 AG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVR 232 (596)
T COG0465 153 AGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVR 232 (596)
T ss_pred cCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHH
Confidence 4788888877766643 11 1245699999999999999999942
Q ss_pred ----HHhccCCceEEEEcCccccH--------------HHHHHHHhhcCCCCCC-ceEEE-EeCChhhhhcc-----Ccc
Q 008394 45 ----KISSDFEGSCFLENVREESQ--------------DQEESLIESLDWLTPV-CRIII-TTRNKQVLRNW-----GVR 99 (567)
Q Consensus 45 ----~~~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~-~~ilv-TtR~~~~~~~~-----~~~ 99 (567)
+.+++=+|++|+|.+..... ..+..+.....-++.+ +.|++ .|.-++|.+.. .-+
T Consensus 233 dLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFD 312 (596)
T COG0465 233 DLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFD 312 (596)
T ss_pred HHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcc
Confidence 23455689999986543332 2334444444433322 23333 34444444321 223
Q ss_pred cEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 100 KIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
..+.++.-+-..-.++++-++-....... -...|++.+-|.-
T Consensus 313 RqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 313 RQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFS 355 (596)
T ss_pred eeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcc
Confidence 45556555555555566644422222111 1334777776654
No 233
>PRK03839 putative kinase; Provisional
Probab=96.42 E-value=0.0027 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 234
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.40 E-value=0.003 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68999999999999999998653
No 235
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.39 E-value=0.0017 Score=53.60 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCC
Q 008394 25 LGIWGIGGIGKTTIARAIFDKISSDFE 51 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~~~~f~ 51 (567)
|.|+|.+|+||||+|+.+...+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999987655554
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.39 E-value=0.0024 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhc
Q 008394 25 LGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
|-|+|.+|+|||++|+.+...+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 569999999999999998877543
No 237
>PRK06547 hypothetical protein; Provisional
Probab=96.39 E-value=0.0056 Score=54.53 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 19 SKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 19 ~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.....+|+|.|++|+||||+|+.+.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566799999999999999999998864
No 238
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.38 E-value=0.011 Score=54.70 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=40.6
Q ss_pred HhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccHHHHHHHHh
Q 008394 14 LLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQDQEESLIE 72 (567)
Q Consensus 14 ~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~ 72 (567)
+|..+-..-+++.|+|++|+|||++|.++.......-..++|++.-. .....+.....
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~ 61 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAE 61 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHH
Confidence 34333344579999999999999999999887655567788887654 44444444433
No 239
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.097 Score=54.45 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=85.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCceEEEEcC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------DFEGSCFLENV 59 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~ 59 (567)
+||-+-....|...+..+. -.......|+-|+||||+|+.+...+.. .|..++-+|..
T Consensus 18 vvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaA 96 (515)
T COG2812 18 VVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAA 96 (515)
T ss_pred hcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhh
Confidence 4788888899999885442 3456889999999999999999765311 12222222222
Q ss_pred ccccH--------------------------------HHHHHHHhhcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEcC
Q 008394 60 REESQ--------------------------------DQEESLIESLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEME 105 (567)
Q Consensus 60 ~~~~~--------------------------------~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l~ 105 (567)
..... ..+..|...+.--...-+.|..|.+. .+.... ...+.+.++
T Consensus 97 Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fk 176 (515)
T COG2812 97 SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFK 176 (515)
T ss_pred hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcccccccc
Confidence 22211 34444444443323344444444444 443332 223579999
Q ss_pred CCCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCCc
Q 008394 106 ALEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGVP 141 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~glP 141 (567)
.++.++....+...+....- .++....|++..+|-.
T Consensus 177 ri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 177 RLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCCh
Confidence 99999999999988765443 2336677777777743
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.38 E-value=0.0066 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+++|.++|+.|+||||.+.+++...+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3699999999999999888888775544
No 241
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.37 E-value=0.0043 Score=54.99 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 589999999999888764444467889999999999999999873
No 242
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.14 Score=50.89 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=79.9
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh---------------------ccCCceEEEEcC---ccc
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS---------------------SDFEGSCFLENV---REE 62 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---------------------~~f~~~~~~~~~---~~~ 62 (567)
.-+++.+.+..+ .-...+.++|+.|+||+++|..+.+.+- ..-+...++.-. ...
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 344566666332 2346788999999999999999987641 112333444311 112
Q ss_pred cHHHHHHHHh--------------------------------hcCCCCCCceEEEEeCCh-hhhhcc-CcccEEEcCCCC
Q 008394 63 SQDQEESLIE--------------------------------SLDWLTPVCRIIITTRNK-QVLRNW-GVRKIYEMEALE 108 (567)
Q Consensus 63 ~~~~~~~l~~--------------------------------~~~~~~~~~~ilvTtR~~-~~~~~~-~~~~~~~l~~L~ 108 (567)
..++...+.+ .+.--..++.+|.+|.+. .+.... ..-..+.+.+++
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~ 168 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPP 168 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCC
Confidence 2233333333 222223455555555554 344332 222468999999
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHH
Q 008394 109 YHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
++++.+.+.... +.+.+.+..+++.++|.|.....+
T Consensus 169 ~~~~~~~L~~~~---~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 169 EQYALTWLSREV---TMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHHHHHHHHcc---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999998887542 233334778899999999644433
No 243
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.35 E-value=0.0091 Score=55.74 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=37.3
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcC
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENV 59 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~ 59 (567)
+..|.++|..+=..-.++.|+|.+|+||||+|.+++......-..++|++.-
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3456666643334457999999999999999999988765444556677643
No 244
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.35 E-value=0.0037 Score=57.97 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 245
>PHA00729 NTP-binding motif containing protein
Probab=96.34 E-value=0.0063 Score=56.06 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++...|.|+|.+|+||||||..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999998764
No 246
>PRK08233 hypothetical protein; Provisional
Probab=96.34 E-value=0.0034 Score=56.72 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|+|.|.+|+||||+|+.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998753
No 247
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.34 E-value=0.0034 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0003 Score=65.14 Aligned_cols=98 Identities=23% Similarity=0.193 Sum_probs=57.5
Q ss_pred cCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccCh--hhhccCCCcEEecC
Q 008394 426 NKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS--SIELLLRLEYLDLS 503 (567)
Q Consensus 426 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~ 503 (567)
.+.+.|+..+|. +..+. .+.+|+.|++|.||-|....--|...+..|++|+|..|.|..+.+ -+.++++|+.|.|.
T Consensus 19 ~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCC-ccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344455555555 22221 133566666666666544433344444466666666677776643 36788888888888
Q ss_pred CCccCccCccc-----ccCCCCCcEEe
Q 008394 504 DCKRLKSLPSS-----LCKLKSLEILD 525 (567)
Q Consensus 504 ~~~~~~~~p~~-----~~~l~~L~~L~ 525 (567)
.|+-.+.-+.. +.-+|+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 88766654432 45677777776
No 249
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.011 Score=55.80 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=44.0
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc------CCceEEEEcCccccHHHHHHHHhhcC
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD------FEGSCFLENVREESQDQEESLIESLD 75 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (567)
.|.++|..+-..-.++.|+|.+|+|||++|.+++-..... -..++|++.-.......+..+.+...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~ 78 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFG 78 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhc
Confidence 4455554333445799999999999999999997553222 36788888666555555555554443
No 250
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.32 E-value=0.011 Score=56.91 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+..++|.++|++|+||||++.+++..+...-..+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999887755433444443
No 251
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.28 E-value=0.042 Score=59.93 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=67.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh-------------------------------ccCCceEEEEcCccccH-------
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS-------------------------------SDFEGSCFLENVREESQ------- 64 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~-------------------------------~~f~~~~~~~~~~~~~~------- 64 (567)
+-|.|+|++|.|||++|+.+..... ..-++++|+|++.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~ 265 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 265 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCC
Confidence 3499999999999999999876421 12245777776544311
Q ss_pred -------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhcc-----CcccEEEcCCCCHHHHHHHHHHhhccCCCChH-H
Q 008394 65 -------DQEESLIESLDWL--TPVCRIIITTRNKQVLRNW-----GVRKIYEMEALEYHHALELFSRHAFKQNHPDE-L 129 (567)
Q Consensus 65 -------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~ 129 (567)
..+..+...+... ..+..+|.||..++..+.. ..+..+.++.-+.++-.+++..+........+ .
T Consensus 266 g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d 345 (644)
T PRK10733 266 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID 345 (644)
T ss_pred CCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 1222232222211 2344556677766543321 12457788888888888888877644322111 2
Q ss_pred HHHHHHHcCCC
Q 008394 130 SSKAVKYAQGV 140 (567)
Q Consensus 130 ~~~i~~~c~gl 140 (567)
...+++.+.|.
T Consensus 346 ~~~la~~t~G~ 356 (644)
T PRK10733 346 AAIIARGTPGF 356 (644)
T ss_pred HHHHHhhCCCC
Confidence 34566666553
No 252
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.28 E-value=0.008 Score=55.72 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEG 52 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~ 52 (567)
++...|.++||+|+||||..++++..+.+.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 456689999999999999999999887666543
No 253
>PRK06762 hypothetical protein; Provisional
Probab=96.27 E-value=0.0042 Score=55.21 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+|.|.|++|+||||+|+++.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 254
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.24 E-value=0.004 Score=55.79 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...|.|+|++|+||||+|+.+.+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999886
No 255
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.021 Score=53.53 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
|.+..+++|.+-+.- +-...+-|.+||.+|.|||-||++|+++
T Consensus 189 Gle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 189 GLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 678888888877642 1134567899999999999999999874
No 256
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.22 E-value=0.007 Score=60.76 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHhccc------------CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 1 MVGVESIVEEIESLLAVE------------SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~------------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
++|.++.++.+.-.+... .-..+.|.++|++|+|||++|+.+...+...|
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 578888888886555421 11236899999999999999999998875443
No 257
>PRK12377 putative replication protein; Provisional
Probab=96.21 E-value=0.0091 Score=56.41 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+.|+|.+|+|||.||..+++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357999999999999999999999766555556554
No 258
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00012 Score=67.63 Aligned_cols=99 Identities=18% Similarity=0.093 Sum_probs=64.4
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
+++.|++.||.+..+.-...++.|++|.|+-|+|+.+.+-. .|.+|++|.|..|.+- .+.....+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~--rCtrLkElYLRkN~I~--sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ--RCTRLKELYLRKNCIE--SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH--HHHHHHHHHHHhcccc--cHHHHHHHhcCchhhhHhh
Confidence 66777788887777766667777888888888887774433 5777888877777542 2222233456777777777
Q ss_pred CCCccCCccCC-----cccCCCCCcEEE
Q 008394 434 RGSKSLKSLPA-----GIFNLEFLTTLD 456 (567)
Q Consensus 434 ~~~~~~~~~p~-----~l~~l~~L~~L~ 456 (567)
..|.-.+.-+. -+.-||+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77764444432 133467777765
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.012 Score=58.69 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
..++|+|+|++|+||||++.+++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999998776543
No 260
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.20 E-value=0.069 Score=54.54 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=70.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc--------------------------CC---ceEEEEcCccccHHHHHHHHhhc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD--------------------------FE---GSCFLENVREESQDQEESLIESL 74 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------------f~---~~~~~~~~~~~~~~~~~~l~~~~ 74 (567)
++.|+|+-++||||+++.+.....+. +. ..+++|.++.. ..|+.....+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~lk~l 116 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV--PDWERALKYL 116 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc--hhHHHHHHHH
Confidence 99999999999999997765443222 12 24455555554 4566666665
Q ss_pred CCCCCCceEEEEeCChhhhhc-----c-CcccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHH
Q 008394 75 DWLTPVCRIIITTRNKQVLRN-----W-GVRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 75 ~~~~~~~~ilvTtR~~~~~~~-----~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
...++. +|++|+-+...... + +....+++-||+..|-..+-...+... ... ..-.-.-..||.|-++..-
T Consensus 117 ~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~-~~~-~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 117 YDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPS-KLE-LLFEKYLETGGFPESVKAD 192 (398)
T ss_pred Hccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchh-HHH-HHHHHHHHhCCCcHHHhCc
Confidence 554555 88888877644322 2 233578999999999876543111000 000 1111123468999776543
No 261
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.19 E-value=0.011 Score=57.08 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=50.9
Q ss_pred CCCchHHHHH---HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE-EcCccccHHHHHHHHhhc
Q 008394 1 MVGVESIVEE---IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL-ENVREESQDQEESLIESL 74 (567)
Q Consensus 1 ~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~l~~~~ 74 (567)
|||..+..+. +.++..++.-.-+.|.|+|++|.|||.||..+.+.+..+-+.+... +.+-..-..+.+.|.+++
T Consensus 41 ~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~ 118 (450)
T COG1224 41 LVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118 (450)
T ss_pred ccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHH
Confidence 5676666654 6677776655567999999999999999999999988776665532 122222224555555555
No 262
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.18 E-value=0.0056 Score=56.62 Aligned_cols=28 Identities=39% Similarity=0.627 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+...+|+|+|++|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999987654
No 263
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.14 E-value=0.011 Score=56.58 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVR 60 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~ 60 (567)
.+..+|.|.|.+|+|||||..++.+.++......+..-+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~ 142 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ 142 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcC
Confidence 56789999999999999999999998877665555443433
No 264
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.0087 Score=53.70 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..+|+|.|++|+||||+|+.+...+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999988753
No 265
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.13 E-value=0.017 Score=53.90 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEE
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCF 55 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~ 55 (567)
.-.++.+.+....++..+|+|.|+||+||+||..++...+.+. ....+.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl 63 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL 63 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence 3445555555555678899999999999999999998876543 444333
No 266
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.08 Score=52.41 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCceEEEEeCChh-hhhccC-cccEEEcCCCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchH
Q 008394 79 PVCRIIITTRNKQ-VLRNWG-VRKIYEMEALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLA 143 (567)
Q Consensus 79 ~~~~ilvTtR~~~-~~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLa 143 (567)
.++.+|++|.+.+ +..... .-..+.+.+++.+++.+.+.... .+.. ...+..++|-|+.
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~--~~~l~~~~g~p~~ 202 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAEP--EERLAFHSGAPLF 202 (325)
T ss_pred CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCcH--HHHHHHhCCChhh
Confidence 3455666776654 333321 12478899999999998887641 1111 1224568898964
No 267
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.12 E-value=0.02 Score=53.79 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=43.2
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC------CceEEEEcCccccHHHHHHHHhh
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF------EGSCFLENVREESQDQEESLIES 73 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~l~~~ 73 (567)
+.|.++|..+-..-.++.|+|.+|+|||++|.++.......- ..++|++.........+..+...
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~ 76 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVR 76 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 345555543334456999999999999999999987654444 56677776554444444444443
No 268
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.11 E-value=0.0081 Score=54.38 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+||-++.++++.-.- .+++.+-+.|.||+|+||||-+..+++.+
T Consensus 29 IVGNe~tv~rl~via--~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIA--KEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hhCCHHHHHHHHHHH--HcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 478889898887766 45677899999999999999888887764
No 269
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.014 Score=54.92 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+..+.+.......+...+.++|.+|+|||+||..+++.+...-..+++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444444322223357999999999999999999998765545555553
No 270
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.11 E-value=0.0087 Score=60.13 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHhccc--------C----CCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 1 MVGVESIVEEIESLLAVE--------S----KDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--------~----~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++|.++.++.+...+... . ...+.|.++|++|+|||++|+.+...+...
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 478899999888777420 0 113689999999999999999999876543
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.11 E-value=0.064 Score=47.31 Aligned_cols=43 Identities=30% Similarity=0.382 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|-++.++.|.+.+..+ .-...+.++|+.|+||+++|..+.+.+
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 6677888888888433 234568999999999999999998753
No 272
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.09 E-value=0.0054 Score=55.70 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.++|+|.|++|+||||+|+.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999998764
No 273
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.09 E-value=0.0079 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+|+|.|.+|+||||+|..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887543
No 274
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.023 Score=52.50 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
|-.+.++++++.... +-+..+-|.+||++|.|||-.|++|+++
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 567888888877643 1145677999999999999999999763
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0085 Score=57.02 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH----hccCCceEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI----SSDFEGSCFL 56 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~----~~~f~~~~~~ 56 (567)
-++|.++|++|.|||+|++++++++ ...|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 4799999999999999999999974 4555555544
No 276
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.04 E-value=0.03 Score=51.03 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=31.9
Q ss_pred chHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH-H-hccCCceEEEE
Q 008394 4 VESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK-I-SSDFEGSCFLE 57 (567)
Q Consensus 4 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~-~-~~~f~~~~~~~ 57 (567)
+...-....+.|. +..++.+.|++|.|||.||.+..-+ + .+.|+..+++.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4445555566664 2349999999999999999988754 3 45677766654
No 277
>PRK13947 shikimate kinase; Provisional
Probab=96.02 E-value=0.0053 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|.|+|++|+||||+|+.+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 278
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.02 E-value=2 Score=43.44 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHH-HHHHH
Q 008394 4 VESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIA-RAIFD 44 (567)
Q Consensus 4 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa-~~~~~ 44 (567)
|.+.++.|..||.+..+ ..|+|.||-|+||+.|+ .++.+
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHh
Confidence 67889999999965433 59999999999999999 66643
No 279
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.02 E-value=0.011 Score=50.59 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~ 57 (567)
++|.|+|..|+|||||++.+.+.+. ..+...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4899999999999999999999875 5666665554
No 280
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.035 Score=57.46 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=63.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH-------------------------------HhccCCceEEEEcCccccH------
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK-------------------------------ISSDFEGSCFLENVREESQ------ 64 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~-------------------------------~~~~f~~~~~~~~~~~~~~------ 64 (567)
..=|.++|++|.|||-||++|++. .+..-+|++|+|.+.....
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 456899999999999999999752 2344589999886543332
Q ss_pred -----HHHHHHHhhcCCCCCC--ceEEEEeCChhhhhc-c----CcccEEEcCCCCHHHHHHHHHHhhc
Q 008394 65 -----DQEESLIESLDWLTPV--CRIIITTRNKQVLRN-W----GVRKIYEMEALEYHHALELFSRHAF 121 (567)
Q Consensus 65 -----~~~~~l~~~~~~~~~~--~~ilvTtR~~~~~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~ 121 (567)
.....|...+.-+..+ --||-.|.-+++-+. + .-+..+-++.=+.+|-.++++..+-
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 4556666666554333 334444544444322 1 1134566666677788888887765
No 281
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.01 E-value=0.036 Score=59.38 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=36.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|.+..+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 198 liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 478888888888887654444457899999999999999999863
No 282
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.00 E-value=0.0055 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999865
No 283
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.00 E-value=0.0065 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|.+.|++|+||||+|+++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4899999999999999999987753
No 284
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.97 E-value=0.038 Score=62.22 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHhccc-------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVE-------SKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|-++.++.|.+.+... .....++.++|+.|+|||+||+.+.+.+
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999998877531 1223567899999999999999998753
No 285
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.95 E-value=0.0069 Score=55.89 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=25.4
Q ss_pred hcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 15 LAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 15 L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+..+.+..+.|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445567789999999999999999998744
No 286
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.94 E-value=0.013 Score=53.82 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+...+|+|+|++|+||||+|+.+...+...-...++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45579999999999999999999987644333344453
No 287
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.93 E-value=0.0056 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|.|+|++|+||||+|+.+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 288
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.91 E-value=0.0092 Score=52.88 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhc-cCCceEEE
Q 008394 25 LGIWGIGGIGKTTIARAIFDKISS-DFEGSCFL 56 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~~~-~f~~~~~~ 56 (567)
|.|.|.+|+||||+++++.+.++. .++..-|+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~ 34 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFY 34 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEE
Confidence 789999999999999999998854 45544443
No 289
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.007 Score=51.71 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998753
No 290
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.88 E-value=0.013 Score=57.45 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=47.4
Q ss_pred CCCchHHHHH---HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE-cCccccHHHHHHHHhhcC
Q 008394 1 MVGVESIVEE---IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE-NVREESQDQEESLIESLD 75 (567)
Q Consensus 1 ~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~l~~~~~ 75 (567)
+||..+..+. +.++..++.=.-+.|.|.|++|.|||+||..+.+.+..+.|.....- .+-.....+-|.|.+.++
T Consensus 26 lVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa~R 104 (398)
T PF06068_consen 26 LVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQAFR 104 (398)
T ss_dssp EES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHHHH
Confidence 4677666665 55666554433478999999999999999999999998888777542 222222355666666553
No 291
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.86 E-value=0.0067 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.536 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|.|.|++|+||||+|+++.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 292
>PRK13949 shikimate kinase; Provisional
Probab=95.86 E-value=0.0073 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|+|+|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 293
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.85 E-value=0.022 Score=47.00 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCchHHHHHH----HHHhcc-cCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 2 VGVESIVEEI----ESLLAV-ESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 2 vGr~~~~~~l----~~~L~~-~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+|-.-..+.| ...+.. .++++-|+..+|.+|+|||.+|+.+++.
T Consensus 28 ~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 28 FGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4555444444 444433 3356779999999999999999988876
No 294
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.83 E-value=0.011 Score=65.86 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHhcc----cCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAV----ESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|.++.+++|.+++.. .....+++.++|++|+|||++|+.+.+.+.
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36888889998887643 122345899999999999999999988653
No 295
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.052 Score=54.08 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=36.4
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|-+....++..+......-...+.++|++|+||||+|..+.+.+-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 35677788888888864432333599999999999999999998754
No 296
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.22 Score=46.30 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=40.4
Q ss_pred EEcCCCCHHHHHHHHHHhhccCCCChH-----HHHHHHHHcCCCchHHHHHHHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQNHPDE-----LSSKAVKYAQGVPLALKVLGCF 150 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~~~~~-----~~~~i~~~c~glPLai~~~~~~ 150 (567)
+.++|++.++....++.+..+...+.+ ....|..+..|.|.+|..++..
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 899999999999999888765554433 7788999999999999987763
No 297
>PRK10536 hypothetical protein; Provisional
Probab=95.75 E-value=0.025 Score=53.13 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 2 VGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.+|......+..++... ..|.+.|++|.|||+||.++..+
T Consensus 58 ~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 58 LARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 45777777777777432 39999999999999999999874
No 298
>PRK06217 hypothetical protein; Validated
Probab=95.74 E-value=0.0095 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..|+|.|.+|+||||+|+++.+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 359999999999999999999875
No 299
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.74 E-value=0.013 Score=51.57 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=28.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcC
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENV 59 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~ 59 (567)
++.|+|.+|+||||++..+.......-..++|++.-
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 478999999999999999998876655556666543
No 300
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.73 E-value=0.0097 Score=53.81 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSC 54 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~ 54 (567)
.++|+|+|+.|+|||||++++.+.....|...+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v 34 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVV 34 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccce
Confidence 368999999999999999999988776774433
No 301
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.73 E-value=0.0088 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+++|.|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987753
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.72 E-value=0.066 Score=51.55 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=40.4
Q ss_pred CCCchHHHHHHHHHhccc--CCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 1 MVGVESIVEEIESLLAVE--SKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
++|-.++-.++.+++... -++...|.|+|+.|.|||+|...+..+ .+.+.....+
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~ 82 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLL 82 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEE
Confidence 578888889999988652 244558999999999999998877666 3444444433
No 303
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.011 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.++++|+|.+|+||||+.+.+.+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887765
No 304
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.014 Score=63.21 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=36.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||++++.++.+.|....++- -.++|.+|||||++|.-+++++
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHH
Confidence 4899999999999997744332 3578999999999999888764
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.0099 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|.|.|.+|+||||+|+++.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999883
No 306
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.027 Score=49.02 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+..+|=+.|.+|+||||+|.++++.+.+.-..+..+|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34569999999999999999999999877666665554
No 307
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.68 E-value=0.031 Score=55.08 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
...+++++|++|+||||++.+++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999998876544
No 308
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.65 E-value=0.018 Score=58.75 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCCchHHHHHHHHHhc-------cc-----C--CCeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 1 MVGVESIVEEIESLLA-------VE-----S--KDVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~-------~~-----~--~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
++|.+..++.+...+. .. + -..+.|.++|++|+|||++|+.+...+...|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4788888887754441 11 0 0125799999999999999999987764433
No 309
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.65 E-value=0.0085 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.676 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 310
>PRK13768 GTPase; Provisional
Probab=95.64 E-value=0.018 Score=54.99 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|.|+||+||||++..+.......-..++.++
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 58999999999999999999887655433444443
No 311
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.05 Score=52.82 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..++|+|+|++|+||||++.++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999987764
No 312
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.63 E-value=0.016 Score=57.88 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|+++.+..+...+..+. .+.+.|++|+|||+||+.+.+.+.
T Consensus 26 ~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 26 VVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred eeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhC
Confidence 4677777777766664443 799999999999999999987654
No 313
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.62 E-value=0.009 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 314
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.11 Score=55.39 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHHhcc--------------------------
Q 008394 3 GVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKISSD-------------------------- 49 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-------------------------- 49 (567)
+++.-+-.+...+..+- .-..++.++|.+|+||||+++.++..+.-|
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~ 484 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFS 484 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHH
Confidence 44555556666665421 134689999999999999999997653322
Q ss_pred -----CCceEEEEcCcccc-----H------HHHHHHHh--hcCCCCCCceEEEEeCCh-hhhhccCc--ccEEEcCCCC
Q 008394 50 -----FEGSCFLENVREES-----Q------DQEESLIE--SLDWLTPVCRIIITTRNK-QVLRNWGV--RKIYEMEALE 108 (567)
Q Consensus 50 -----f~~~~~~~~~~~~~-----~------~~~~~l~~--~~~~~~~~~~ilvTtR~~-~~~~~~~~--~~~~~l~~L~ 108 (567)
=+.++++.+..-.. . .....+.. .+..-.++..++.||.+. .+...... -+.++++.++
T Consensus 485 ~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~ls 564 (953)
T KOG0736|consen 485 RARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALS 564 (953)
T ss_pred HHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCC
Confidence 22334433211110 0 11122221 222223444555554443 22222211 2578899999
Q ss_pred HHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 109 YHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+++-.++|+..+....-.++ .-++++++|.|.-
T Consensus 565 e~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFS 598 (953)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhcCCCC
Confidence 99999999998765544333 5677888887754
No 315
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.61 E-value=0.01 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.|+|++|+||||+|+.+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 316
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.0087 Score=51.86 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIF 43 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~ 43 (567)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 317
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.61 E-value=0.024 Score=54.48 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=38.0
Q ss_pred HHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCcc
Q 008394 12 ESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVRE 61 (567)
Q Consensus 12 ~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 61 (567)
.+.+..+=+.-+++.|+|.+|+|||++|.++..........++|++--..
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 33443323455799999999999999999999887777888888864433
No 318
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.61 E-value=0.024 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCChHH-HHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKT-TIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKT-tLa~~~~~~~ 46 (567)
-++|.++|+.||||| |||+-.++-+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 579999999999998 5666555544
No 319
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.61 E-value=0.0086 Score=54.95 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|+|.|++|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998776
No 320
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.60 E-value=0.0091 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|+|+|+.|+|||||++.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999987643
No 321
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.59 E-value=0.0094 Score=55.51 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|+|.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.59 E-value=0.028 Score=53.29 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE 51 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~ 51 (567)
++...+....++..+|+|.|.||+||+||.-++...+...-.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 444555445577889999999999999999999887654433
No 323
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.59 E-value=0.016 Score=50.52 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+.+++|.+.+.. ++++++|..|||||||+..+...
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 457788888832 59999999999999999998864
No 324
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.59 E-value=0.033 Score=54.54 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHhc-ccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccc
Q 008394 10 EIESLLA-VESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREE 62 (567)
Q Consensus 10 ~l~~~L~-~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 62 (567)
.|..+|. .+=+.-+++-|+|++|+||||||.++.......-..++|++.-...
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 3445553 2224457999999999999999999887765555666788655433
No 325
>PRK13948 shikimate kinase; Provisional
Probab=95.58 E-value=0.011 Score=53.13 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
....|+++|+.|+||||+++.+.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999998763
No 326
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.57 E-value=0.022 Score=59.80 Aligned_cols=51 Identities=29% Similarity=0.367 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcc---cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 5 ESIVEEIESLLAV---ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 5 ~~~~~~l~~~L~~---~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..-+++|.+||.. +....+++.+.|++|+||||.++.+++.+ .|+..-|..
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3457788888865 22345699999999999999999999875 456666643
No 327
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.13 Score=49.21 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=57.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhhhhccCcc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQVLRNWGVR 99 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 99 (567)
+.-+++=|+|+.|+||||+|.+++-.++..-...+|+|............+.... .+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-----------------------~d 114 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-----------------------LD 114 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-----------------------hc
Confidence 3457899999999999999999998887777789999988877666665555443 12
Q ss_pred cEEEcCCCCHHHHHHHHHHhh
Q 008394 100 KIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 100 ~~~~l~~L~~~~~~~l~~~~~ 120 (567)
..+-.++.+-+++.++....+
T Consensus 115 ~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 115 NLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ceeEecCCCHHHHHHHHHHHH
Confidence 344455666677766666544
No 328
>PRK14974 cell division protein FtsY; Provisional
Probab=95.55 E-value=0.032 Score=55.15 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+..+|.++|++|+||||++.+++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998876543
No 329
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.54 E-value=0.015 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
...+++|+|..|+|||||+.++...++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999988754
No 330
>PRK13946 shikimate kinase; Provisional
Probab=95.54 E-value=0.011 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.|+++|++|+||||+++.+.+.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999876
No 331
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.53 E-value=0.015 Score=50.82 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc-CCceEE
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD-FEGSCF 55 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~ 55 (567)
+++|+|+.|+||||++.++...++.. +...++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 58899999999999999999987654 444443
No 332
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.53 E-value=0.034 Score=56.58 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
...+|.++|.+|+||||+|.+++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998776544
No 333
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.53 E-value=0.038 Score=54.48 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-cCCceEEEEcC
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-DFEGSCFLENV 59 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~f~~~~~~~~~ 59 (567)
.++.+.+....+...+|+|.|.+|+|||||+..+...++. .....+...+.
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3444444333456789999999999999999999887654 34444433333
No 334
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.19 Score=47.52 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=77.8
Q ss_pred CCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHH--------------------------
Q 008394 2 VGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDK-------------------------- 45 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~-------------------------- 45 (567)
.|.+...+.|.+.+.- .+..-+-|.++|++|.||+-||++|+-.
T Consensus 136 AGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVk 215 (439)
T KOG0739|consen 136 AGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 215 (439)
T ss_pred ccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHH
Confidence 4677777777765532 2234578999999999999999999531
Q ss_pred -----HhccCCceEEEEcCccccH------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhccCc---ccEEE
Q 008394 46 -----ISSDFEGSCFLENVREESQ------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRNWGV---RKIYE 103 (567)
Q Consensus 46 -----~~~~f~~~~~~~~~~~~~~------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~~~---~~~~~ 103 (567)
.+++-+.++|++.+..... -..+-|.+.--.+ +.|.-|+-.|..+-+.+..-. ...+-
T Consensus 216 nLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIY 295 (439)
T KOG0739|consen 216 NLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIY 295 (439)
T ss_pred HHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhccee
Confidence 2445577888876553222 1122222222222 344555666777765544211 11122
Q ss_pred cCCCCHHHHH-HHHHHhhccCCC--ChHHHHHHHHHcCCCc
Q 008394 104 MEALEYHHAL-ELFSRHAFKQNH--PDELSSKAVKYAQGVP 141 (567)
Q Consensus 104 l~~L~~~~~~-~l~~~~~~~~~~--~~~~~~~i~~~c~glP 141 (567)
-||.+..|. .+|+-+++...+ .++.-+.+.++..|.-
T Consensus 296 -IPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 296 -IPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred -ccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 255666554 456656554332 2224566777776643
No 335
>PRK14530 adenylate kinase; Provisional
Probab=95.51 E-value=0.011 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|+|+|++|+||||+|+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998775
No 336
>PRK13975 thymidylate kinase; Provisional
Probab=95.50 E-value=0.013 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..|+|.|+.|+||||+|+.+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 48999999999999999999998764
No 337
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.50 E-value=0.019 Score=45.41 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++.+.|.+|+||||++..+...+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 338
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.50 E-value=0.033 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+++.++|++|+||||++.++.....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999877654
No 339
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.49 E-value=0.032 Score=52.76 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=34.5
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+.|.++|..+=..-.++.|.|.+|+|||++|.++.......-..++|++
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555666443345579999999999999999998655323455666665
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.48 E-value=0.025 Score=54.22 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
.-.++.|.|.+|+|||++|.++.......-..+++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45699999999999999999986653333345555553
No 341
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.48 E-value=0.27 Score=47.33 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccc-CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVE-SKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 6 ~~~~~l~~~L~~~-~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.++++.+++... ....+-+.|||.+|.|||++++++.+..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 4566777777653 3456789999999999999999999864
No 342
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.47 E-value=0.018 Score=55.92 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=26.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+.|+|+|-|||||||+|..+...+...=..++.+|
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999999887654333344443
No 343
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.015 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..++|.|++|+||+||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999874
No 344
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.041 Score=52.27 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH-------------------------------HhccCCceEEEEcCccccH-----
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDK-------------------------------ISSDFEGSCFLENVREESQ----- 64 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~-------------------------------~~~~f~~~~~~~~~~~~~~----- 64 (567)
.+..++|||++|-|||-+|+.|+.. .+++-+|++|++++.....
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se 244 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE 244 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecc
Confidence 3568999999999999999999642 2345578888876543322
Q ss_pred ---------HHHHHHHhhcCCC--CCCceEEEEeCChhhhh
Q 008394 65 ---------DQEESLIESLDWL--TPVCRIIITTRNKQVLR 94 (567)
Q Consensus 65 ---------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~ 94 (567)
..+-+|...+.-. ....++|+||..++...
T Consensus 245 ~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 245 GTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred ccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 2233333333222 25678899998876544
No 345
>PRK05439 pantothenate kinase; Provisional
Probab=95.46 E-value=0.024 Score=55.25 Aligned_cols=29 Identities=34% Similarity=0.451 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
+..-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55679999999999999999999876643
No 346
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.45 E-value=0.023 Score=48.92 Aligned_cols=69 Identities=12% Similarity=0.264 Sum_probs=47.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH-hccCCceEEEEcCccccH----------------HHHHHHHhhcCCCCCCceEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI-SSDFEGSCFLENVREESQ----------------DQEESLIESLDWLTPVCRII 84 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~il 84 (567)
.-.++|+|-|||||+++.+.+|.-+ .+++...+|++-...... +..|.+-.+.-.+...|.++
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV 99 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV 99 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence 3468899999999999999999864 678899999875443332 33444444444455556566
Q ss_pred EEeCCh
Q 008394 85 ITTRNK 90 (567)
Q Consensus 85 vTtR~~ 90 (567)
..|-+.
T Consensus 100 FSTTDr 105 (246)
T KOG4252|consen 100 FSTTDR 105 (246)
T ss_pred EecccH
Confidence 555543
No 347
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.45 E-value=0.031 Score=59.65 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 3 GVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
.|.+..+.|.+..........+|.|+|++|+||||+|+.++..+..
T Consensus 373 ~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 373 SFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred cHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4556666666666554455669999999999999999999998754
No 348
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.45 E-value=0.033 Score=59.89 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=47.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEEcCccccH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLENVREESQ 64 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~ 64 (567)
++|.++.++.|...+... +.+.++|++|+||||+|+.+.+.+. .+++...|..+......
T Consensus 33 vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~~ 93 (637)
T PRK13765 33 VIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNN 93 (637)
T ss_pred cCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcchH
Confidence 478888999888877543 3799999999999999999998763 34678888877555444
No 349
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.45 E-value=0.056 Score=53.59 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccC------CceEEEEcCccccHHHHHHHHhhcC
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDF------EGSCFLENVREESQDQEESLIESLD 75 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (567)
.-.++-|+|++|+|||++|.+++-...... ..++|++.-..+..+.+....+.+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 456899999999999999999987643221 3678888766666666666665543
No 350
>PHA02244 ATPase-like protein
Probab=95.43 E-value=0.016 Score=57.35 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
-|.|+|++|+|||++|+++++...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588899999999999999987643
No 351
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.43 E-value=0.018 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
.|.+.|++|+||||+|+++.+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887543
No 352
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.43 E-value=0.028 Score=49.86 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=34.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCcc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVRE 61 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 61 (567)
..+|.+-|++|+|||+|..+.++.+++.|+..+.--++-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 4799999999999999999999999989888776555544
No 353
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.42 E-value=0.041 Score=51.70 Aligned_cols=37 Identities=35% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...+.+...+... .+..|+|++|.||||++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 3455566666322 179999999999998888887776
No 354
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.42 E-value=0.019 Score=61.57 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHhcccC---CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVES---KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~---~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|-+..++++..++.... ...++++|+|++|+||||+++.++..+
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678888999999986532 233579999999999999999998753
No 355
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.40 E-value=0.039 Score=54.19 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc-cCCce
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-DFEGS 53 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-~f~~~ 53 (567)
++.+.+....+...+|+|.|++|+||||++..+...... .+.+.
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~ 66 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVA 66 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 333334333356789999999999999999999886543 34443
No 356
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.39 E-value=0.037 Score=51.14 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=27.5
Q ss_pred cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 18 ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 18 ~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
++.++++|+++|..|+|||||..++.+......
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~ 50 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEV 50 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 345789999999999999999999998765433
No 357
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.39 E-value=0.049 Score=49.80 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+..+.+...+...+ +++.|.|++|.||||+++.+.+.+...
T Consensus 5 ~Q~~a~~~~l~~~~---~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 5 EQREAVRAILTSGD---RVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHHHCTC---SEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC---eEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34455666664332 489999999999999999998877654
No 358
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.38 E-value=0.041 Score=53.96 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHhc-ccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccc
Q 008394 10 EIESLLA-VESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREE 62 (567)
Q Consensus 10 ~l~~~L~-~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 62 (567)
.|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|++.-...
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~ 95 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL 95 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence 3444553 2223456899999999999999999987766556677788754443
No 359
>PRK10867 signal recognition particle protein; Provisional
Probab=95.38 E-value=0.064 Score=55.00 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=30.4
Q ss_pred HHHHHHhccc-------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 9 EEIESLLAVE-------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 9 ~~l~~~L~~~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++|.+.+... .+...+|.++|++|+||||.|.+++..++..
T Consensus 80 ~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 80 DELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred HHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3566666431 1336799999999999999999998876554
No 360
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.37 E-value=0.041 Score=56.51 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
...+|.++|.+|+||||+|.+++..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877644
No 361
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.37 E-value=0.014 Score=51.04 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=23.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
+.|+++||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3689999999999999999998765444
No 362
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.35 E-value=0.012 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|+|+|+.|+||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999874
No 363
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.35 E-value=0.026 Score=55.29 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=41.6
Q ss_pred CCCchHHHHHHHHHhcccC----CCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 1 MVGVESIVEEIESLLAVES----KDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~----~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
|+|.++.++++.+.+...+ .+-+++.++|+.|.||||||..+-+-+.+-
T Consensus 63 ~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 63 FYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 6899999999999997643 345799999999999999999998776543
No 364
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.35 E-value=0.017 Score=52.67 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|.|.|.+|+||||+|+.+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 365
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.35 E-value=0.013 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.|+|+|+.|+||||+|+.+.+.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 479999999999999999999875
No 366
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.014 Score=51.91 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+.|.+.|.+|+||||+|+++.+.+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999865443
No 367
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.34 E-value=0.024 Score=57.56 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHhc-------c---cC--C----CeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 1 MVGVESIVEEIESLLA-------V---ES--K----DVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~-------~---~~--~----~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
++|.++.++.+...+. . .. + ....|.++|++|+|||++|+.+...+...|
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 4788888888765441 1 11 1 125799999999999999999997764433
No 368
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.32 E-value=0.041 Score=51.75 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
+.|.+++..+=..-..+.|.|.+|+||||+|.++.......-..++|++.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34555553332345699999999999999999986554334556777765
No 369
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.32 E-value=0.016 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+.++|+|+|++|+|||||++++.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999865
No 370
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.30 E-value=0.024 Score=55.10 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|+|-|||||||+|..+...+...-..+..+|
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 57899999999999999999887654433344444
No 371
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.30 E-value=0.023 Score=49.38 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 372
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.016 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|+|-||=|+||||||+.+.+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45899999999999999999998875
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.28 E-value=0.029 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++.++|++|+||||++..+...+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999877554
No 374
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.28 E-value=0.032 Score=46.00 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 25 LGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
|.+.|.||+||||++..+.+.+.+.-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999988755433344343
No 375
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.093 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+-|.++|++|.|||-||++|+-...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 5699999999999999999985433
No 376
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.27 Score=45.54 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
|.+..++++.+.+--. -...+-|.+||++|.|||-+|++.+-
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 6788888888765321 13356799999999999999998753
No 377
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.19 Score=49.09 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHhcccC------------CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAVES------------KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~------------~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.++.++++.+...-.- ...+-|.++|++|.|||-+|+++....
T Consensus 96 gLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea 151 (386)
T KOG0737|consen 96 GLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA 151 (386)
T ss_pred chHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc
Confidence 56666777666543210 234579999999999999999998653
No 378
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.25 E-value=0.026 Score=52.63 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=30.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
.++|.|..|+||||+++.+.......|+.+.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 78999999999999999999988899977776643
No 379
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.24 E-value=0.025 Score=51.30 Aligned_cols=34 Identities=24% Similarity=0.127 Sum_probs=25.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++.|.|++|+|||++|.++.......=..++|++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999998776433334556664
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.23 E-value=0.013 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|+|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999875
No 381
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.051 Score=54.05 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..++++|+|+.|+||||++.++.......-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999876643333344443
No 382
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.22 E-value=0.024 Score=59.32 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=27.9
Q ss_pred HHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 12 ESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 12 ~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+.+....++..+|+|.|+.|+||||||+.+...+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34444444567899999999999999999998764
No 383
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.22 E-value=0.029 Score=53.91 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
++|+|+|.+|+|||||+.++...+++.. .+..++.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 5899999999999999999999987766 4555554
No 384
>PRK08181 transposase; Validated
Probab=95.21 E-value=0.045 Score=52.47 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=28.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.-+.|+|++|+|||.||..+.+.+......+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 36999999999999999999988655544455554
No 385
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.21 E-value=0.02 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEcCCCChHHHHHHHHHHHHhccCCce
Q 008394 27 IWGIGGIGKTTIARAIFDKISSDFEGS 53 (567)
Q Consensus 27 I~G~gGvGKTtLa~~~~~~~~~~f~~~ 53 (567)
|+||+|+||||+++.+.+-+...-..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~ 27 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDV 27 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-E
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCc
Confidence 689999999999999998775543333
No 386
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.17 E-value=0.029 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++|+|.|-||+||||++..+...+.+.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 478999999999999999998876543
No 387
>PRK09354 recA recombinase A; Provisional
Probab=95.17 E-value=0.057 Score=53.40 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=39.3
Q ss_pred HHHHHhc-ccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCcccc
Q 008394 10 EIESLLA-VESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREES 63 (567)
Q Consensus 10 ~l~~~L~-~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 63 (567)
.|..+|. .+=+.-+++-|+|++|+||||||.++.......-...+|++.-....
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 4455554 22244569999999999999999999877666667778887655543
No 388
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.16 E-value=0.031 Score=54.72 Aligned_cols=35 Identities=31% Similarity=0.318 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
.+++...|.|||||||+|.+..-...+....+..+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999776655444444443
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.15 E-value=0.042 Score=55.38 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=35.8
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++..+...-..++|++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45555554322334699999999999999999999876555455666654
No 390
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.15 E-value=0.086 Score=52.14 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc------CCceEEEEcCccccHHHHHHHHhhcC
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD------FEGSCFLENVREESQDQEESLIESLD 75 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (567)
.-.++-|+|.+|+||||++.+++-.+... -..++|++.-..+..+.+..+...+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcC
Confidence 45789999999999999999998765321 12678888766566666666655543
No 391
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.14 E-value=0.018 Score=51.41 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+.|.|+|++|+||||+|+.+.+.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999998763
No 392
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.4 Score=50.95 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=78.3
Q ss_pred CchHHHHHHHHHhcccC-----------CCeEEEEEEcCCCChHHHHHHHHHH---------------------------
Q 008394 3 GVESIVEEIESLLAVES-----------KDVYCLGIWGIGGIGKTTIARAIFD--------------------------- 44 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~-----------~~~~~i~I~G~gGvGKTtLa~~~~~--------------------------- 44 (567)
|..+.++.+++.+.-.. ....-|.+||++|.|||-||.++..
T Consensus 671 g~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR 750 (952)
T KOG0735|consen 671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVR 750 (952)
T ss_pred cHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHH
Confidence 56667777777664322 1234599999999999999999953
Q ss_pred ----HHhccCCceEEEEcCcccc-----------HHHHHHHHhhcCCC--CCCceEE-EEeCChhhhhcc----CcccEE
Q 008394 45 ----KISSDFEGSCFLENVREES-----------QDQEESLIESLDWL--TPVCRII-ITTRNKQVLRNW----GVRKIY 102 (567)
Q Consensus 45 ----~~~~~f~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~--~~~~~il-vTtR~~~~~~~~----~~~~~~ 102 (567)
+.+..-+|+.|.|...... +.....+...+.-. -.|--|+ .|||-.-+-..+ .-++.+
T Consensus 751 ~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v 830 (952)
T KOG0735|consen 751 DLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLV 830 (952)
T ss_pred HHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceee
Confidence 2244568888887544332 25566666666432 1333444 355544322222 112233
Q ss_pred EcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 103 EMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 103 ~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.-+.=++.+-.++++..+....-+.. ..+.++.+..|.-
T Consensus 831 ~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 831 YCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFT 870 (952)
T ss_pred eCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCc
Confidence 33334556667777766542222111 3566777777655
No 393
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.11 E-value=0.019 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+|+|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998763
No 394
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.11 E-value=0.031 Score=51.22 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=26.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCF 55 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~ 55 (567)
..|.|+|+.|+||||++..+...+.......++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~ 34 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL 34 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEE
Confidence 479999999999999999988877655554444
No 395
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.10 E-value=0.033 Score=53.83 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+...+|+|.|..|+||||+|+.+..-+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988876554
No 396
>PF13245 AAA_19: Part of AAA domain
Probab=95.10 E-value=0.051 Score=40.92 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=17.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+++.|.|++|.|||+++.+....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48889999999999555554443
No 397
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.10 E-value=0.022 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|.|+|..|+|||||.+.+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 398
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.09 E-value=0.046 Score=61.57 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHHhcccC------C-CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 1 MVGVESIVEEIESLLAVES------K-DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~------~-~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++|.+..++.|.+.+.... + ...++.++|+.|+|||++|+.+++.+..
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4688999998888876421 1 2357899999999999999999987643
No 399
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.08 E-value=0.043 Score=54.24 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=28.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..+.++|..|+|||.||..+++.+...-..+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998755444555555
No 400
>PRK08116 hypothetical protein; Validated
Probab=95.08 E-value=0.054 Score=52.09 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=28.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..+.|+|.+|+|||.||..+++.+......+++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35899999999999999999999765544455554
No 401
>PRK14527 adenylate kinase; Provisional
Probab=95.08 E-value=0.02 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|.|+|++|+||||+|+.+.++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 402
>PRK13695 putative NTPase; Provisional
Probab=95.07 E-value=0.029 Score=50.24 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc-cCCceEEE
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISS-DFEGSCFL 56 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~-~f~~~~~~ 56 (567)
.|+|+|.+|+|||||++.+++.++. .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4889999999999999999987653 45444344
No 403
>PLN02200 adenylate kinase family protein
Probab=95.06 E-value=0.023 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...+|+|.|++|+||||+|+.+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 404
>PRK06761 hypothetical protein; Provisional
Probab=95.06 E-value=0.029 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=23.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++|.|.|++|+||||+|+.+++.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 58999999999999999999998754
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.03 E-value=0.034 Score=48.19 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++++.|.+|+||||++..+...+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998876443
No 406
>PRK04182 cytidylate kinase; Provisional
Probab=95.01 E-value=0.02 Score=51.48 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|+|.|+.|+||||+|+.+.+++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998875
No 407
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.088 Score=48.22 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..|+|-|+-|+||||.++.+++.+++....++|..
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57999999999999999999999877765566544
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.97 E-value=0.032 Score=53.51 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+.|.|.|.+|+||||+|+++.+.+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 479999999999999999999887653
No 409
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.97 E-value=0.02 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..++|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999997653
No 410
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.97 E-value=0.052 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..++.+.|+.|+|||.+|+.+.+.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999988765
No 411
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.96 E-value=0.053 Score=51.19 Aligned_cols=50 Identities=16% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
..|.++|..+=..-.++.|+|.+|+|||++|.++.......=..++|++.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 34555664333445799999999999999999996543233445666654
No 412
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.95 E-value=0.042 Score=53.81 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
.+.++|.+.|=|||||||+|..+...+.+.=..+..+
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4568999999999999999999888765543333333
No 413
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.95 E-value=0.022 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|.|.|++|+||||+|+.+.++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998874
No 414
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.95 E-value=0.092 Score=44.11 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.4
Q ss_pred cCCCcEEec
Q 008394 494 LLRLEYLDL 502 (567)
Q Consensus 494 l~~L~~L~l 502 (567)
+++|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 344444444
No 415
>PRK09183 transposase/IS protein; Provisional
Probab=94.94 E-value=0.035 Score=53.11 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=25.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
..+.|+|++|+|||+||..+.......-..+.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4788999999999999999987754333333344
No 416
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.94 E-value=0.031 Score=46.33 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
-.+|.+.|.=|+||||+++.+.+.+
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3699999999999999999999864
No 417
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.94 E-value=0.0095 Score=32.74 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=7.5
Q ss_pred ceeeccCccCcccChhh
Q 008394 475 SCLFLSGTAIEELPSSI 491 (567)
Q Consensus 475 ~~L~l~~~~i~~lp~~~ 491 (567)
++|++++|.++.+|+.|
T Consensus 3 ~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 3 EYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp SEEEETSSEESEEGTTT
T ss_pred cEEECCCCcCEeCChhh
Confidence 33444444444444443
No 418
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.93 E-value=0.022 Score=50.70 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998764
No 419
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.93 E-value=0.035 Score=53.69 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=26.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|.|-|||||||+|..+...+...=..++.+|
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47888899999999999999888754333344454
No 420
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.045 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 421
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.91 E-value=0.038 Score=49.57 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=26.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+..-+.|+|.+|+|||.||..+.+.+...-..+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 3457999999999999999999987544433445554
No 422
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.91 E-value=0.049 Score=47.70 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+++.|+|..|+|||||+.++...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887654
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.90 E-value=0.025 Score=45.50 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIF 43 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~ 43 (567)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3589999999999999999976
No 424
>PRK06526 transposase; Provisional
Probab=94.90 E-value=0.019 Score=54.59 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..-+.|+|++|+|||+||..+...+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 347899999999999999999887543
No 425
>PRK04132 replication factor C small subunit; Provisional
Probab=94.89 E-value=0.43 Score=53.05 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=79.9
Q ss_pred EEc--CCCChHHHHHHHHHHHH-hccC-------------------------------C----ceEEEEcCccccHHHHH
Q 008394 27 IWG--IGGIGKTTIARAIFDKI-SSDF-------------------------------E----GSCFLENVREESQDQEE 68 (567)
Q Consensus 27 I~G--~gGvGKTtLa~~~~~~~-~~~f-------------------------------~----~~~~~~~~~~~~~~~~~ 68 (567)
+.| |.++||||+|..+++++ ...+ . .++++|.+.....+..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQn 648 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQ 648 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHH
Confidence 346 88999999999998754 1111 0 24556666666666666
Q ss_pred HHHhhcCCCCCCceEEEEeCChh-hhhccC-cccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHH
Q 008394 69 SLIESLDWLTPVCRIIITTRNKQ-VLRNWG-VRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLAL 144 (567)
Q Consensus 69 ~l~~~~~~~~~~~~ilvTtR~~~-~~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai 144 (567)
.|+..+.--...+++|.+|.+.. +..... ....+++++++.++..+.+...+... ..+++....|++.++|.+..+
T Consensus 649 ALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 649 ALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 77666655445666666655543 322222 23479999999999998888766432 234557899999999988555
Q ss_pred HHHH
Q 008394 145 KVLG 148 (567)
Q Consensus 145 ~~~~ 148 (567)
..+.
T Consensus 729 In~L 732 (846)
T PRK04132 729 INIL 732 (846)
T ss_pred HHHH
Confidence 4433
No 426
>PRK14532 adenylate kinase; Provisional
Probab=94.88 E-value=0.023 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.|.|++|+||||+|+.+.++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 427
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.87 E-value=0.076 Score=57.29 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=42.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEEEEcCcc
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCFLENVRE 61 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~~~~~~~ 61 (567)
++|.++.++.+...+... +.+.++|++|+||||+|+.+.+.+... |...+++.+...
T Consensus 20 viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~ 77 (608)
T TIGR00764 20 VIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED 77 (608)
T ss_pred ccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC
Confidence 478888888888888543 266799999999999999999887544 444555555433
No 428
>PRK14531 adenylate kinase; Provisional
Probab=94.86 E-value=0.027 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|.|.|++|+||||+|+.+.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998875
No 429
>PRK05973 replicative DNA helicase; Provisional
Probab=94.84 E-value=0.057 Score=50.49 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
-.++.|.|.+|+|||++|.++.......-..+++++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999998776433334455554
No 430
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.81 E-value=0.044 Score=47.76 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
.++++|+|..|+|||||..++...++++---+.-+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 3699999999999999999999988766545554543
No 431
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.80 E-value=0.33 Score=57.62 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+-|.++|++|.|||.||++++.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~ 1652 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLAT 1652 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 432
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.79 E-value=0.025 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.|.|++|+||||+|+.+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 433
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.79 E-value=0.032 Score=55.40 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|....+.++.+.+..-......|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 589999999998888765445567999999999999999999753
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.11 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..++.++|++|+||||+|.++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 435
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.77 E-value=0.014 Score=29.68 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=9.4
Q ss_pred CCcceeccccccccccc
Q 008394 543 SSLGTLLLEKPILREYQ 559 (567)
Q Consensus 543 ~~L~~L~l~~~~l~~~p 559 (567)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46777777777777765
No 436
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.75 E-value=0.056 Score=49.47 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=24.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFE 51 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~ 51 (567)
..|+|.|+.|+|||||++.+.+.+...+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~ 30 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQ 30 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCc
Confidence 36899999999999999999988765444
No 437
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.75 E-value=0.041 Score=53.33 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=22.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++|+|+|-|||||||+|..+...+.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~ 28 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTM 28 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 478888999999999999998876443
No 438
>PRK04328 hypothetical protein; Provisional
Probab=94.75 E-value=0.065 Score=51.07 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+.|.++|..+=..-.++.|.|.+|+|||++|.++.......-..++|++
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455556433234569999999999999999998665333345566665
No 439
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.74 E-value=0.043 Score=49.76 Aligned_cols=40 Identities=33% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
++|-+..+..+.-... +..-+.|+|++|+|||++|+.+-.
T Consensus 5 I~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp SSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 3577777766665443 236899999999999999999953
No 440
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.71 E-value=0.11 Score=51.23 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh------ccCCceEEEEcCccccHHHHHHHHhhcCC
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS------SDFEGSCFLENVREESQDQEESLIESLDW 76 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (567)
.|.++|..+=..-+++-|+|++|+|||+++.+++-... ..=..++|++.-..+..+++..+.+.+.+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~ 156 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGV 156 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 34445533223456899999999999999998864432 11246788887776667777777666543
No 441
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.71 E-value=0.084 Score=50.68 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCcc
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVRE 61 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 61 (567)
.++.+.+++... -..|.|.|+.|+||||++..+.+.+...-..++.+.+..+
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce
Confidence 344455555322 2489999999999999999988776543233444554444
No 442
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.71 E-value=0.029 Score=55.77 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|++..+.++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 578999999998888764444557999999999999999999753
No 443
>PRK15453 phosphoribulokinase; Provisional
Probab=94.71 E-value=0.055 Score=51.51 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...+|+|.|-+|+||||+|+.+.+.++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346999999999999999999987664
No 444
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.70 E-value=0.14 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..++.++|.+|+||||.|.+++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999988754
No 445
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.70 E-value=0.052 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
+|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 446
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.68 E-value=0.026 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.|+|+|++|+||+|++..+.+..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998663
No 447
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.68 E-value=0.046 Score=52.81 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+|+|.|-|||||||+|..+...+...-..+..+|
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6888899999999999999887655443444443
No 448
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.028 Score=51.69 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.+++|+|..|+|||||++.+.--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 48999999999999999999743
No 449
>PRK14528 adenylate kinase; Provisional
Probab=94.63 E-value=0.032 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.62 E-value=0.074 Score=55.25 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=35.6
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
+.++.++|..+=..-.++.|.|.+|+|||||+.++.......-..++|++.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 345556564333345699999999999999999998776443345666653
No 451
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.62 E-value=0.03 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|+|.|..|+|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 3899999999999999999976
No 452
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.62 E-value=0.043 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+....|+|+|+.|+||||+++.+.+.+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998875
No 453
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=94.61 E-value=0.047 Score=53.37 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=26.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|+|-||+||||+|..+...+...-..+..+|
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID 35 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLG 35 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47888999999999999999987655433344444
No 454
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.60 E-value=0.045 Score=53.69 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=22.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+++.+.|-|||||||+|....-.....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR 28 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC
Confidence 589999999999999999887765443
No 455
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.59 E-value=0.066 Score=48.94 Aligned_cols=23 Identities=43% Similarity=0.754 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|+|+|-||+||||+|.-+...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 68999999999999999966664
No 456
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.59 E-value=0.049 Score=52.84 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=25.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|+|-|||||||+|..+...+.+.=..+..+|
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 57888999999999999999887644322333343
No 457
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.57 E-value=0.048 Score=54.60 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
-.+++++|+.|+||||++.++.....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988754
No 458
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.57 E-value=0.055 Score=49.42 Aligned_cols=26 Identities=35% Similarity=0.389 Sum_probs=23.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..|+|.|+.|+||||+|+.+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988754
No 459
>PRK10646 ADP-binding protein; Provisional
Probab=94.55 E-value=0.065 Score=46.24 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++..++-+.|...-..-.+|.+.|-=|+||||+++.+.+.+
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44555555554322223499999999999999999999874
No 460
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.54 E-value=0.11 Score=51.74 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=45.8
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------cCCceEEEEcCccccHHHHHHHHhhcCC
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------DFEGSCFLENVREESQDQEESLIESLDW 76 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (567)
.|.++|..+-....++-|+|.+|+|||++|..++-.+.- .-..++|++--..+..+++..+.+.+.+
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~ 183 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGL 183 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCC
Confidence 344444332234568999999999999999988765321 1126889988877777777777666543
No 461
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.54 E-value=0.049 Score=54.06 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=34.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+||-++.+..|...+. ++...-|.|.|..|+||||+|+.+++-+
T Consensus 19 ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 19 IVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4788887777776653 3455667899999999999999998753
No 462
>PLN02674 adenylate kinase
Probab=94.52 E-value=0.062 Score=50.51 Aligned_cols=27 Identities=33% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.....|.|.|++|+||||+|+.+.++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 334578999999999999999998764
No 463
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.075 Score=55.25 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.++|+|+|++|+||||++.++...+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999987654
No 464
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.032 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.+-|.|.|-+|+||||+|.++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 346899999999999999999865
No 465
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.46 E-value=0.05 Score=51.08 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH-hccCCceEEEE
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI-SSDFEGSCFLE 57 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~-~~~f~~~~~~~ 57 (567)
++.+.+..+=+.-.++.|.|.+|.||||+|.++.... ++. ..+++++
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 3444443322334599999999999999987776654 444 3445554
No 466
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.45 E-value=0.053 Score=53.69 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.++.++.+.-.+. ..+...+.+.|.+|+||||+|+.+..-+
T Consensus 10 i~Gq~~~~~~l~~~~~--~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 10 IVGQEEMKQAMVLTAI--DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred hCCHHHHHHHHHHHHh--ccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4788888887764332 1223479999999999999999997654
No 467
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.45 E-value=0.036 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 468
>PRK02496 adk adenylate kinase; Provisional
Probab=94.44 E-value=0.04 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|.|.|++|+||||+|+.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 469
>PRK06921 hypothetical protein; Provisional
Probab=94.40 E-value=0.06 Score=51.70 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEEEEc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCFLEN 58 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~~~~ 58 (567)
...+.++|..|+|||.||..+++.+... -..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4579999999999999999999987654 444556653
No 470
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.40 E-value=0.15 Score=50.73 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=45.1
Q ss_pred HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh------ccCCceEEEEcCccccHHHHHHHHhhcCC
Q 008394 11 IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS------SDFEGSCFLENVREESQDQEESLIESLDW 76 (567)
Q Consensus 11 l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (567)
|.++|..+=..-.++-|+|.+|+|||+|+.+++-... ..-..++|++--..+..+++..+.+.+.+
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~ 186 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 4444432223456888999999999999999865432 11246788888777777777777766544
No 471
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.39 E-value=0.037 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+|.+.|++|+||||+|+++.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578999999999999999998764
No 472
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.39 E-value=0.09 Score=51.55 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+-+.|+|..|+|||.||..+++.+...-..+.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 457999999999999999999998754433344443
No 473
>PRK08356 hypothetical protein; Provisional
Probab=94.38 E-value=0.036 Score=50.64 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEEcCCCChHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIF 43 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~ 43 (567)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999993
No 474
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.38 E-value=0.028 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
..|+|+|++|+|||||+.++.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 47999999999999999999875
No 475
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.38 E-value=0.0054 Score=64.84 Aligned_cols=189 Identities=22% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCeeEEeeCC-CCCCCCCCCC------CCCCceEEEccCCc-ccccchhhhhh-ccCCcEEecccCccccccCCCCCC
Q 008394 351 RFTEVKYLHWHG-YPLKSMPSNI------CAEQLVFLEVPNSS-IEQLWDGMKQH-RGKLNQIIHATCKMLIAKTPNPTL 421 (567)
Q Consensus 351 ~~~~L~~L~l~~-~~~~~l~~~~------~~~~L~~L~l~~n~-i~~l~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~ 421 (567)
.+++|+.|++++ +......... ..++|+.|+++.+. +.+..-..... +++|++|.+.+|..++ .......
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt-~~gl~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT-DEGLVSI 290 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc-hhHHHHH
Q ss_pred CCCCcCCcEEecCCCccCCc--cCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccC----cccChhhhccC
Q 008394 422 IPHLNKLVILNLRGSKSLKS--LPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAI----EELPSSIELLL 495 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i----~~lp~~~~~l~ 495 (567)
...++.|+.|++++|..... +......+++|+.|.+..... ...++.+.+.+... ......+..++
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~ 362 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCP 362 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCC
Q ss_pred CCcEEecCCCccCccCcccccCCCCCcEEeccCCCCC-cccCcccCCCCCcceecccccccccc
Q 008394 496 RLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNL-QRLPECLGQLSSLGTLLLEKPILREY 558 (567)
Q Consensus 496 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~l~~~ 558 (567)
+|+.+.+..|. ...... .+.+.+|+.+ ..+........+++.|+++.+.....
T Consensus 363 ~l~~~~l~~~~-~~~~~~---------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 363 KLTDLSLSYCG-ISDLGL---------ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred Ccchhhhhhhh-ccCcch---------HHHhcCCcccchHHHHHhccCCccceEecccCccccc
No 476
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.37 E-value=0.07 Score=48.23 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...+|.|.|.+|+||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999998764
No 477
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.37 E-value=0.06 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+|++.|-|||||||+|..+...+...
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~ 27 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKL 27 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhC
Confidence 57888999999999999988765443
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.35 E-value=0.098 Score=47.38 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..++|+|+.|+||||+++.+...+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 48999999999999999999876653
No 479
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.34 E-value=0.064 Score=53.19 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+||.++.+..+.-.+. ++...-+.|.|..|.||||+++.+..-+
T Consensus 6 ivgq~~~~~al~~~~~--~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 6 IVGQDEMKLALLLNVI--DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4788888887654442 3344578899999999999999997643
No 480
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.33 E-value=0.21 Score=41.80 Aligned_cols=114 Identities=8% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCCCCcCCcEEecCCCccCCccC-CcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccCh-hhhccCCCc
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLP-AGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS-SIELLLRLE 498 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~ 498 (567)
.|..+.+|+.+.+.. . ...++ ..+..+.+|+.+.+.. + +..++. .+..++.|+
T Consensus 7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~----------------------~-~~~i~~~~F~~~~~l~ 61 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPN----------------------N-LTSIGDNAFSNCKSLE 61 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESS----------------------T-TSCE-TTTTTT-TT-E
T ss_pred HHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccc----------------------c-ccccceeeeecccccc
Confidence 456666777777653 2 34444 3455666777777765 2 444443 366777888
Q ss_pred EEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 499 YLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 499 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
.+.+.+ .....-...|..+++|+.+.+..+ ...--...+.++ +|+.+.+.. .+..+++..+
T Consensus 62 ~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F 122 (129)
T PF13306_consen 62 SITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF 122 (129)
T ss_dssp EEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred cccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence 998865 322223345777899999999763 332233457776 899888876 6667776665
No 481
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.32 E-value=0.037 Score=51.31 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 008394 25 LGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.|.|++|+||||+|+.+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 482
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.32 E-value=0.035 Score=52.07 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH-HhccCCceEEEEc
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK-ISSDFEGSCFLEN 58 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~-~~~~f~~~~~~~~ 58 (567)
.|.++|..+=+.-.++.|.|.+|+|||++|.++... +++.=..+++++-
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 345555332233469999999999999999998755 4442455566653
No 483
>PLN02165 adenylate isopentenyltransferase
Probab=94.31 E-value=0.039 Score=54.00 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...+|+|+|+.|+||||||..++..+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 345899999999999999999987754
No 484
>PLN02348 phosphoribulokinase
Probab=94.29 E-value=0.061 Score=53.78 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++.-+|+|.|.+|+||||+|+.+.+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 456799999999999999999999887543
No 485
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.24 E-value=0.098 Score=54.28 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
++++.++|..+=..-.++.|.|.+|+|||||+.++.......-..++|++.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 345566664332335699999999999999999998876543345666664
No 486
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.21 E-value=0.096 Score=55.17 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=36.6
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++++.++|..+=..-.++.|.|++|+|||||+.++.......-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666777544455679999999999999999999887544444555554
No 487
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.20 E-value=0.085 Score=44.86 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 5 ESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 5 ~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+++..++-+.|...-..-.||.+.|-=|.||||+++.+.+.+
T Consensus 8 ~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 8 EEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHc
Confidence 455566666665543444599999999999999999999864
No 488
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.20 E-value=0.065 Score=50.64 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+|+|.|.+|+||||+|+++.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877543
No 489
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.20 E-value=0.081 Score=46.39 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHhcccC-CCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 3 GVESIVEEIESLLAVES-KDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~-~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
|.++.++.+.+.+.... .....|+++|++|+||+||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44555566655542211 2234688999999999999999975
No 490
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.19 E-value=0.079 Score=51.80 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=26.4
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...+...+... +.|.|.|++|+||||+|+.++..+
T Consensus 54 ~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 54 TKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred HHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHH
Confidence 34455555332 379999999999999999998753
No 491
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.18 E-value=0.11 Score=49.61 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
+..-+.++|.+|+|||.||.++.+.+...-.-+.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 345799999999999999999999977332333333
No 492
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.15 E-value=0.075 Score=51.41 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=26.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|.|-|||||||+|..+...+...-..+..+|
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 58888899999999999999887654433344444
No 493
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.13 E-value=0.041 Score=47.93 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=18.4
Q ss_pred EEcCCCChHHHHHHHHHHHH
Q 008394 27 IWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 27 I~G~gGvGKTtLa~~~~~~~ 46 (567)
|.|++|+||||+|+.++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 78999999999999999874
No 494
>PRK01184 hypothetical protein; Provisional
Probab=94.12 E-value=0.045 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+|+|+|++|+||||+|+ +.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 443
No 495
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.11 E-value=0.047 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+|+|+|+.|+||||+|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999988765
No 496
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.10 E-value=0.063 Score=54.41 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSC 54 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~ 54 (567)
..+|.|+|..|+|||||+.++...+++.+....
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~~ 37 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSERFSVGY 37 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhCceEEE
Confidence 459999999999999999999999877754444
No 497
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.09 E-value=0.11 Score=48.54 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
.+.++|..+-..-.++.|.|.+|+|||++|.+++......=..+++++.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4555554333345699999999999999999997664333344555543
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.08 E-value=0.046 Score=48.92 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+++|+|+.|.||||+++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999998653
No 499
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.07 E-value=0.044 Score=46.60 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+.|.++|..|+|||||++.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999653
No 500
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.06 E-value=0.046 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|+++|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
Done!