Query 008394
Match_columns 567
No_of_seqs 271 out of 3201
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 01:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-37 4E-42 331.3 17.0 255 2-258 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2E-32 6.9E-37 321.0 23.8 257 1-258 126-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1E-30 3.5E-35 282.0 16.9 236 2-250 131-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.5E-30 1.9E-34 276.3 22.3 253 1-255 126-450 (591)
5 4fcg_A Uncharacterized protein 99.9 9.3E-24 3.2E-28 209.9 16.9 228 312-561 79-319 (328)
6 4fcg_A Uncharacterized protein 99.9 2.2E-23 7.6E-28 207.2 19.5 206 353-564 81-299 (328)
7 3rgz_A Protein brassinosteroid 99.9 2.2E-23 7.7E-28 231.2 17.5 252 284-560 394-722 (768)
8 2id5_A Lingo-1, leucine rich r 99.9 4.5E-23 1.6E-27 216.4 17.6 256 284-563 32-316 (477)
9 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-23 1.2E-27 204.5 14.4 249 284-559 50-308 (313)
10 3v47_A TOLL-like receptor 5B a 99.9 2.4E-22 8.1E-27 209.7 21.0 258 283-563 29-391 (455)
11 1xku_A Decorin; proteoglycan, 99.9 1.7E-21 5.7E-26 194.2 23.7 253 284-563 52-315 (330)
12 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-21 5.8E-26 194.3 22.6 252 284-563 54-316 (332)
13 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-22 4.9E-27 200.1 14.2 230 314-561 50-287 (313)
14 2z66_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 196.1 17.4 227 314-558 28-263 (306)
15 3o6n_A APL1; leucine-rich repe 99.9 1.8E-21 6.1E-26 198.7 22.2 250 284-562 45-314 (390)
16 3zyj_A Leucine-rich repeat-con 99.9 2.1E-21 7.2E-26 201.4 21.1 216 344-563 55-275 (440)
17 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-21 9.7E-26 188.3 20.6 213 343-557 22-239 (285)
18 4eco_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 216.4 15.5 249 284-561 305-584 (636)
19 1xku_A Decorin; proteoglycan, 99.9 2.2E-21 7.6E-26 193.3 19.7 245 287-563 34-283 (330)
20 4ecn_A Leucine-rich repeat pro 99.9 1.4E-21 4.9E-26 215.9 20.1 249 285-562 549-825 (876)
21 3zyi_A Leucine-rich repeat-con 99.9 2.2E-21 7.5E-26 202.0 20.4 199 353-555 99-302 (452)
22 3t6q_A CD180 antigen; protein- 99.9 2.8E-21 9.7E-26 209.1 21.1 264 285-563 255-543 (606)
23 3oja_B Anopheles plasmodium-re 99.9 4E-21 1.4E-25 207.0 22.0 250 284-562 51-320 (597)
24 3rgz_A Protein brassinosteroid 99.9 4.9E-22 1.7E-26 220.4 14.7 211 351-564 341-560 (768)
25 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-21 8E-26 193.3 17.7 244 287-563 36-284 (332)
26 2id5_A Lingo-1, leucine rich r 99.9 1.6E-21 5.3E-26 204.7 17.2 232 314-563 32-292 (477)
27 3vq2_A TLR4, TOLL-like recepto 99.9 3.1E-21 1.1E-25 208.8 19.8 205 352-561 327-539 (606)
28 3v47_A TOLL-like receptor 5B a 99.9 5.8E-21 2E-25 199.1 20.9 135 426-560 275-412 (455)
29 3zyi_A Leucine-rich repeat-con 99.9 7.9E-21 2.7E-25 197.8 21.2 222 285-531 76-302 (452)
30 3zyj_A Leucine-rich repeat-con 99.9 6.2E-21 2.1E-25 197.8 19.9 202 351-556 86-292 (440)
31 2z7x_B TOLL-like receptor 1, v 99.9 1E-20 3.5E-25 200.7 20.5 103 284-409 21-125 (520)
32 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-20 6.6E-25 182.4 20.4 205 355-563 13-221 (285)
33 4eco_A Uncharacterized protein 99.9 9.5E-22 3.2E-26 213.2 12.3 211 349-564 202-454 (636)
34 4fmz_A Internalin; leucine ric 99.9 1.2E-20 4.1E-25 189.4 19.1 253 283-556 87-346 (347)
35 4ecn_A Leucine-rich repeat pro 99.9 2.5E-20 8.5E-25 206.0 23.3 262 283-563 447-773 (876)
36 2o6q_A Variable lymphocyte rec 99.9 2.9E-20 9.9E-25 179.5 21.0 201 353-557 16-219 (270)
37 2z66_A Variable lymphocyte rec 99.9 9.1E-21 3.1E-25 186.7 17.1 215 343-562 18-242 (306)
38 3o6n_A APL1; leucine-rich repe 99.8 2E-20 6.9E-25 190.9 19.3 243 284-559 69-334 (390)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-20 7.5E-25 200.1 20.3 105 284-410 52-157 (562)
40 4fmz_A Internalin; leucine ric 99.8 4.6E-20 1.6E-24 185.1 21.4 240 284-560 66-328 (347)
41 3t6q_A CD180 antigen; protein- 99.8 2.7E-20 9.2E-25 201.4 21.0 205 350-557 347-561 (606)
42 3o53_A Protein LRIM1, AGAP0063 99.8 8.1E-22 2.8E-26 195.2 7.4 238 283-553 33-272 (317)
43 3oja_B Anopheles plasmodium-re 99.8 3E-20 1E-24 200.2 19.2 242 284-556 75-358 (597)
44 2z80_A TOLL-like receptor 2, v 99.8 1.1E-20 3.8E-25 190.1 14.8 203 354-560 101-318 (353)
45 1p9a_G Platelet glycoprotein I 99.8 1E-19 3.5E-24 177.3 20.5 198 352-557 9-209 (290)
46 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-20 7.3E-25 202.2 16.1 206 348-557 345-559 (606)
47 3oja_A Leucine-rich immune mol 99.8 3.4E-21 1.2E-25 201.9 9.3 234 285-551 35-270 (487)
48 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-20 7.1E-25 209.5 15.7 260 282-563 22-358 (844)
49 2z7x_B TOLL-like receptor 1, v 99.8 5.4E-20 1.9E-24 195.2 17.8 135 424-561 322-462 (520)
50 1h6u_A Internalin H; cell adhe 99.8 7.3E-20 2.5E-24 180.1 16.8 197 352-562 40-236 (308)
51 1o6v_A Internalin A; bacterial 99.8 2.3E-19 8E-24 187.4 21.1 250 284-560 112-392 (466)
52 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-19 1.1E-23 195.8 22.7 259 284-563 329-604 (680)
53 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-19 5.7E-24 197.9 20.6 255 284-562 25-348 (680)
54 2z80_A TOLL-like receptor 2, v 99.8 1E-20 3.5E-25 190.3 9.5 209 353-563 76-297 (353)
55 3o53_A Protein LRIM1, AGAP0063 99.8 2E-20 6.8E-25 185.2 11.4 235 287-556 13-250 (317)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-19 4.7E-24 193.8 18.6 136 423-561 350-491 (562)
57 3bz5_A Internalin-J, INLJ; leu 99.8 4.5E-19 1.5E-23 184.1 21.6 211 314-562 42-252 (457)
58 1o6v_A Internalin A; bacterial 99.8 3.1E-19 1.1E-23 186.5 19.8 129 424-559 219-347 (466)
59 2z63_A TOLL-like receptor 4, v 99.8 3.2E-19 1.1E-23 191.5 20.1 257 286-558 259-533 (570)
60 3g06_A SSPH2 (leucine-rich rep 99.8 7.5E-19 2.6E-23 188.0 22.3 229 285-563 62-304 (622)
61 3oja_A Leucine-rich immune mol 99.8 9E-20 3.1E-24 191.0 14.1 214 314-556 34-250 (487)
62 2z62_A TOLL-like receptor 4, v 99.8 6.4E-19 2.2E-23 170.7 18.9 202 353-558 28-239 (276)
63 3bz5_A Internalin-J, INLJ; leu 99.8 2.5E-18 8.7E-23 178.4 23.4 244 285-554 43-297 (457)
64 3rfs_A Internalin B, repeat mo 99.8 6.6E-19 2.3E-23 170.1 17.2 192 353-556 41-235 (272)
65 4g8a_A TOLL-like receptor 4; l 99.8 4.8E-19 1.6E-23 192.5 17.5 91 473-563 470-562 (635)
66 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-18 4.2E-23 195.1 20.9 206 351-559 121-378 (844)
67 2z62_A TOLL-like receptor 4, v 99.8 1.1E-18 3.8E-23 169.1 17.5 203 357-564 11-221 (276)
68 2z81_A CD282 antigen, TOLL-lik 99.8 7.8E-20 2.7E-24 195.3 9.8 141 284-448 26-170 (549)
69 2o6q_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 165.3 20.1 178 353-533 37-219 (270)
70 2z63_A TOLL-like receptor 4, v 99.8 3E-19 1E-23 191.7 14.0 211 351-563 280-514 (570)
71 1wwl_A Monocyte differentiatio 99.8 3E-19 1E-23 176.2 11.9 198 352-558 94-311 (312)
72 3m19_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 162.8 19.1 177 354-534 15-194 (251)
73 2z81_A CD282 antigen, TOLL-lik 99.8 5.9E-19 2E-23 188.5 14.3 138 314-468 26-166 (549)
74 3g06_A SSPH2 (leucine-rich rep 99.8 1E-17 3.5E-22 179.2 23.0 223 286-563 42-281 (622)
75 3rfs_A Internalin B, repeat mo 99.8 3E-18 1E-22 165.6 15.6 199 354-559 20-221 (272)
76 2xwt_C Thyrotropin receptor; s 99.8 2.8E-18 9.7E-23 162.4 13.5 193 353-553 31-236 (239)
77 2xwt_C Thyrotropin receptor; s 99.8 3.9E-18 1.3E-22 161.4 14.2 193 365-564 23-226 (239)
78 1p9a_G Platelet glycoprotein I 99.8 9.8E-18 3.4E-22 163.3 17.0 194 314-532 10-208 (290)
79 1jl5_A Outer protein YOPM; leu 99.7 5.3E-17 1.8E-21 168.3 21.1 243 284-558 131-411 (454)
80 1jl5_A Outer protein YOPM; leu 99.7 1.1E-16 3.9E-21 165.8 21.5 124 350-488 150-273 (454)
81 1wwl_A Monocyte differentiatio 99.7 2.4E-18 8.2E-23 169.8 8.3 202 314-533 95-310 (312)
82 2ca6_A RAN GTPase-activating p 99.7 3.1E-19 1.1E-23 181.8 1.6 235 314-560 32-320 (386)
83 1h6u_A Internalin H; cell adhe 99.7 2E-17 6.9E-22 162.6 14.5 191 314-533 41-231 (308)
84 3cvr_A Invasion plasmid antige 99.7 5.7E-17 1.9E-21 171.3 18.3 188 314-542 59-253 (571)
85 3cvr_A Invasion plasmid antige 99.7 2.5E-17 8.6E-22 174.0 15.0 183 353-561 59-248 (571)
86 3m19_A Variable lymphocyte rec 99.7 9.7E-17 3.3E-21 153.0 17.1 164 344-510 26-194 (251)
87 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 158.5 14.9 167 353-532 46-213 (291)
88 4glp_A Monocyte differentiatio 99.7 2E-17 6.7E-22 163.1 11.4 196 353-557 91-308 (310)
89 4ay9_X Follicle-stimulating ho 99.7 3.3E-17 1.1E-21 164.3 12.9 202 353-560 30-241 (350)
90 2o6s_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 146.7 15.6 178 356-544 10-190 (208)
91 1m9s_A Internalin B; cell inva 99.7 9.4E-17 3.2E-21 171.5 15.4 169 352-533 42-211 (605)
92 4ay9_X Follicle-stimulating ho 99.7 1.2E-16 4E-21 160.3 13.9 194 351-552 52-255 (350)
93 4glp_A Monocyte differentiatio 99.7 6.8E-17 2.3E-21 159.2 11.8 204 353-560 64-289 (310)
94 4g8a_A TOLL-like receptor 4; l 99.7 7E-16 2.4E-20 167.5 19.0 203 352-557 370-581 (635)
95 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.3E-22 165.8 5.2 176 353-529 93-282 (336)
96 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.5E-21 144.9 11.7 152 374-557 43-195 (197)
97 1z7x_W Ribonuclease inhibitor; 99.7 2.4E-18 8.2E-23 179.6 -2.7 254 285-556 4-297 (461)
98 1xeu_A Internalin C; cellular 99.7 3.8E-16 1.3E-20 149.8 12.0 169 354-559 20-188 (263)
99 3goz_A Leucine-rich repeat-con 99.7 8E-18 2.7E-22 169.7 0.1 232 314-558 22-299 (362)
100 2v9t_B SLIT homolog 2 protein 99.7 1.6E-15 5.3E-20 141.3 15.4 151 355-532 13-165 (220)
101 3e6j_A Variable lymphocyte rec 99.6 3E-15 1E-19 140.3 17.1 154 354-533 20-173 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.6 1.9E-15 6.5E-20 140.7 14.6 155 354-534 12-168 (220)
103 2ca6_A RAN GTPase-activating p 99.6 1.4E-17 4.7E-22 169.6 -1.5 210 353-562 32-298 (386)
104 2ast_B S-phase kinase-associat 99.6 2.8E-17 9.7E-22 163.9 0.3 197 353-553 70-282 (336)
105 2v70_A SLIT-2, SLIT homolog 2 99.6 2.6E-15 9E-20 139.8 13.7 151 379-556 15-166 (220)
106 4ezg_A Putative uncharacterize 99.6 9E-16 3.1E-20 140.4 10.3 151 352-531 43-193 (197)
107 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.3E-20 152.7 12.8 174 354-531 19-201 (361)
108 1z7x_W Ribonuclease inhibitor; 99.6 4.3E-18 1.5E-22 177.6 -6.3 205 353-558 170-413 (461)
109 2o6s_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 137.1 14.3 168 344-520 19-190 (208)
110 1h6t_A Internalin B; cell adhe 99.6 1.4E-15 4.8E-20 148.1 11.4 169 314-509 46-214 (291)
111 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5.3E-19 135.5 15.5 153 377-559 21-175 (229)
112 1m9s_A Internalin B; cell inva 99.6 3.8E-15 1.3E-19 159.1 12.2 170 314-510 43-212 (605)
113 1xeu_A Internalin C; cellular 99.6 7.2E-16 2.5E-20 147.8 5.6 148 351-510 39-187 (263)
114 2xot_A Amphoterin-induced prot 99.6 7.2E-15 2.5E-19 147.9 12.0 162 344-509 30-203 (361)
115 3goz_A Leucine-rich repeat-con 99.6 3.1E-16 1E-20 158.0 1.6 208 353-563 22-273 (362)
116 2ell_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 125.9 11.3 135 426-562 24-166 (168)
117 2qen_A Walker-type ATPase; unk 99.5 9.9E-13 3.4E-17 131.6 21.7 237 1-251 14-349 (350)
118 1dce_A Protein (RAB geranylger 99.5 2.4E-16 8.3E-21 167.3 -5.1 185 373-562 347-552 (567)
119 2v9t_B SLIT homolog 2 protein 99.5 4.2E-13 1.4E-17 124.8 14.6 141 344-509 23-166 (220)
120 2fna_A Conserved hypothetical 99.5 3.6E-13 1.2E-17 135.2 14.5 234 1-250 15-356 (357)
121 2je0_A Acidic leucine-rich nuc 99.5 1.9E-13 6.6E-18 118.7 9.6 126 426-552 17-149 (149)
122 2ell_A Acidic leucine-rich nuc 99.4 1.8E-13 6.2E-18 121.5 9.4 130 375-532 24-160 (168)
123 4b8c_D Glucose-repressible alc 99.4 2.8E-14 9.7E-19 156.2 4.4 145 397-553 222-369 (727)
124 1w8a_A SLIT protein; signaling 99.4 6E-13 2E-17 120.9 12.1 132 355-512 10-143 (192)
125 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7.3E-18 118.4 7.6 105 397-528 40-149 (149)
126 4b8c_D Glucose-repressible alc 99.4 2.6E-13 8.9E-18 148.6 10.1 139 419-560 217-358 (727)
127 1w8a_A SLIT protein; signaling 99.4 1.3E-12 4.5E-17 118.6 13.1 126 402-534 11-141 (192)
128 2wfh_A SLIT homolog 2 protein 99.4 3.2E-12 1.1E-16 116.1 14.3 127 355-508 12-139 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.8E-17 117.3 9.3 74 482-557 74-154 (176)
130 2wfh_A SLIT homolog 2 protein 99.4 3.3E-12 1.1E-16 116.0 12.2 126 378-532 13-139 (193)
131 2o6r_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 113.3 13.1 102 354-459 8-109 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-12 5.9E-17 116.1 8.9 127 375-531 19-152 (176)
133 3ogk_B Coronatine-insensitive 99.3 1.8E-13 6.3E-18 147.3 2.9 176 314-503 164-350 (592)
134 3ogk_B Coronatine-insensitive 99.3 1E-13 3.5E-18 149.2 0.1 135 424-558 376-528 (592)
135 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 8.8E-16 108.5 14.2 128 400-533 8-138 (177)
136 3sb4_A Hypothetical leucine ri 99.3 9.5E-12 3.3E-16 123.3 10.4 203 352-564 48-318 (329)
137 1dce_A Protein (RAB geranylger 99.3 3E-12 1E-16 135.8 6.1 120 427-550 442-567 (567)
138 1njg_A DNA polymerase III subu 99.3 1.9E-10 6.4E-15 108.5 17.5 150 1-151 25-231 (250)
139 1ds9_A Outer arm dynein; leuci 99.2 2.4E-13 8.4E-18 124.2 -2.8 140 386-557 36-186 (198)
140 1w5s_A Origin recognition comp 99.2 9.4E-11 3.2E-15 120.0 15.6 230 1-236 24-372 (412)
141 2p1m_B Transport inhibitor res 99.2 4.2E-13 1.4E-17 144.5 -3.2 200 352-555 288-518 (594)
142 3sb4_A Hypothetical leucine ri 99.2 1.1E-10 3.7E-15 115.6 13.6 195 352-550 100-328 (329)
143 3g39_A Variable lymphocyte rec 99.2 1.4E-10 4.8E-15 102.9 11.6 102 427-531 10-114 (170)
144 2r9u_A Variable lymphocyte rec 99.2 1.7E-10 6E-15 102.6 11.8 100 428-530 14-116 (174)
145 2qby_B CDC6 homolog 3, cell di 99.2 4.1E-09 1.4E-13 106.7 22.9 226 1-235 22-339 (384)
146 2qby_A CDC6 homolog 1, cell di 99.1 2.6E-09 8.8E-14 108.1 19.8 228 1-235 22-348 (386)
147 3g39_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 101.1 10.7 105 354-462 10-114 (170)
148 2v1u_A Cell division control p 99.1 2.2E-09 7.6E-14 108.7 18.2 228 1-235 21-351 (387)
149 2p1m_B Transport inhibitor res 99.1 2E-11 6.8E-16 131.3 3.2 240 309-550 61-345 (594)
150 1fnn_A CDC6P, cell division co 99.1 7.3E-09 2.5E-13 105.0 21.2 229 1-236 19-352 (389)
151 1ds9_A Outer arm dynein; leuci 99.1 9.8E-13 3.4E-17 120.2 -6.9 113 445-560 43-157 (198)
152 2chg_A Replication factor C sm 99.1 3.1E-09 1.1E-13 98.5 16.5 148 1-150 19-206 (226)
153 2r9u_A Variable lymphocyte rec 99.1 7.3E-10 2.5E-14 98.6 11.5 103 354-461 13-116 (174)
154 4fdw_A Leucine rich hypothetic 99.1 2.3E-09 7.9E-14 108.6 16.5 196 349-555 176-382 (401)
155 4fdw_A Leucine rich hypothetic 99.1 3E-09 1E-13 107.8 17.0 197 354-563 158-365 (401)
156 3un9_A NLR family member X1; l 99.0 3.3E-11 1.1E-15 121.0 -1.4 179 353-556 72-283 (372)
157 1sxj_B Activator 1 37 kDa subu 98.9 1.7E-08 6E-13 99.3 14.5 144 1-146 23-207 (323)
158 1iqp_A RFCS; clamp loader, ext 98.9 4.6E-08 1.6E-12 96.4 17.4 149 1-151 27-215 (327)
159 3un9_A NLR family member X1; l 98.9 9.6E-11 3.3E-15 117.6 -3.0 191 314-531 72-282 (372)
160 1hqc_A RUVB; extended AAA-ATPa 98.8 1.6E-07 5.4E-12 92.5 19.4 227 1-239 14-302 (324)
161 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.2E-13 100.9 11.2 58 474-532 58-116 (347)
162 3pfi_A Holliday junction ATP-d 98.7 4.8E-07 1.6E-11 89.6 18.8 231 1-244 31-322 (338)
163 1jr3_A DNA polymerase III subu 98.7 3.3E-07 1.1E-11 92.1 17.4 148 1-149 18-222 (373)
164 2ifg_A High affinity nerve gro 98.7 2.6E-08 9E-13 99.2 8.7 105 453-559 11-119 (347)
165 2chq_A Replication factor C sm 98.6 6.4E-07 2.2E-11 87.8 15.8 147 1-149 19-205 (319)
166 2ra8_A Uncharacterized protein 98.6 1.3E-08 4.4E-13 101.3 3.0 150 397-554 170-341 (362)
167 2ra8_A Uncharacterized protein 98.5 5.7E-08 1.9E-12 96.6 4.2 159 352-530 171-341 (362)
168 1in4_A RUVB, holliday junction 98.5 1.9E-05 6.7E-10 77.7 22.5 236 1-248 27-323 (334)
169 1sxj_D Activator 1 41 kDa subu 98.5 4.7E-06 1.6E-10 82.9 18.2 146 1-148 39-235 (353)
170 3bos_A Putative DNA replicatio 98.5 6.5E-07 2.2E-11 83.8 10.9 143 5-149 37-218 (242)
171 3uk6_A RUVB-like 2; hexameric 98.5 2.2E-06 7.5E-11 85.9 15.4 147 1-148 46-303 (368)
172 3h4m_A Proteasome-activating n 98.4 3.2E-06 1.1E-10 81.4 14.3 146 1-146 19-229 (285)
173 1sxj_A Activator 1 95 kDa subu 98.4 4.2E-06 1.4E-10 87.7 16.0 178 1-180 41-288 (516)
174 1d2n_A N-ethylmaleimide-sensit 98.4 5.3E-06 1.8E-10 79.2 15.0 137 1-140 35-229 (272)
175 3pvs_A Replication-associated 98.4 1.8E-06 6.1E-11 88.3 11.8 145 1-149 28-216 (447)
176 1sxj_E Activator 1 40 kDa subu 98.3 4.5E-06 1.5E-10 83.1 13.9 147 1-149 16-238 (354)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.3 8.3E-06 2.8E-10 77.3 14.6 147 1-147 8-221 (262)
178 1sxj_C Activator 1 40 kDa subu 98.3 2E-05 6.9E-10 77.9 17.5 145 1-147 27-211 (340)
179 2qp9_X Vacuolar protein sortin 98.3 2.6E-05 8.9E-10 77.4 17.5 148 1-148 53-261 (355)
180 3eie_A Vacuolar protein sortin 98.3 1.8E-05 6E-10 77.6 16.1 146 1-146 20-226 (322)
181 3d8b_A Fidgetin-like protein 1 98.3 1.5E-05 5E-10 79.3 15.5 149 1-149 86-296 (357)
182 1jbk_A CLPB protein; beta barr 98.3 7.5E-06 2.6E-10 73.3 12.1 44 1-46 24-67 (195)
183 3syl_A Protein CBBX; photosynt 98.2 1.2E-05 4.1E-10 78.4 14.2 122 1-122 33-219 (309)
184 3n70_A Transport activator; si 98.2 3E-06 1E-10 72.4 7.9 90 1-90 3-116 (145)
185 4b4t_J 26S protease regulatory 98.2 1.2E-05 4.1E-10 79.7 12.9 141 1-141 150-354 (405)
186 2z4s_A Chromosomal replication 98.2 9.8E-06 3.4E-10 82.9 12.5 125 22-146 130-304 (440)
187 1xwi_A SKD1 protein; VPS4B, AA 98.2 4.7E-05 1.6E-09 74.4 16.9 148 1-148 14-223 (322)
188 2zan_A Vacuolar protein sortin 98.1 5.4E-05 1.8E-09 77.5 16.8 147 1-147 136-344 (444)
189 1l8q_A Chromosomal replication 98.1 2.9E-05 9.9E-10 76.1 14.1 135 7-143 22-203 (324)
190 3b9p_A CG5977-PA, isoform A; A 98.1 4.7E-05 1.6E-09 73.6 15.3 148 1-148 23-233 (297)
191 4b4t_M 26S protease regulatory 98.1 1.4E-05 4.8E-10 80.4 11.3 141 1-141 183-387 (434)
192 3u61_B DNA polymerase accessor 98.1 2.3E-05 8E-10 76.8 12.8 145 1-146 28-214 (324)
193 3vfd_A Spastin; ATPase, microt 98.1 6.9E-05 2.4E-09 75.5 15.9 148 1-148 117-326 (389)
194 4b4t_L 26S protease subunit RP 98.1 2.7E-05 9.3E-10 78.4 12.7 140 2-141 184-387 (437)
195 3cf0_A Transitional endoplasmi 98.0 5.7E-05 2E-09 73.1 14.1 143 1-143 17-223 (301)
196 1io0_A Tropomodulin; LRR prote 98.0 1.5E-06 5E-11 77.8 2.3 70 487-556 85-164 (185)
197 1a5t_A Delta prime, HOLB; zinc 98.0 0.00014 4.7E-09 71.5 16.6 140 5-148 8-205 (334)
198 4b4t_K 26S protease regulatory 98.0 3.4E-05 1.2E-09 77.6 12.1 141 1-141 174-379 (428)
199 4b4t_I 26S protease regulatory 98.0 3.6E-05 1.2E-09 76.6 11.9 141 1-141 184-388 (437)
200 4fs7_A Uncharacterized protein 98.0 6.8E-05 2.3E-09 75.7 14.3 21 296-322 59-79 (394)
201 4b4t_H 26S protease regulatory 98.0 3.8E-05 1.3E-09 77.2 11.7 141 1-141 211-415 (467)
202 3hu3_A Transitional endoplasmi 98.0 6.6E-05 2.3E-09 77.5 13.8 140 1-140 206-406 (489)
203 3e4g_A ATP synthase subunit S, 97.9 3E-06 1E-10 74.0 2.2 87 427-533 62-153 (176)
204 1ofh_A ATP-dependent HSL prote 97.9 4.8E-05 1.7E-09 73.9 11.1 46 1-46 17-74 (310)
205 3rw6_A Nuclear RNA export fact 97.9 2E-06 6.8E-11 81.1 0.9 81 448-549 168-257 (267)
206 3e4g_A ATP synthase subunit S, 97.9 2.9E-06 9.8E-11 74.2 1.5 87 376-464 62-153 (176)
207 4fs7_A Uncharacterized protein 97.8 0.00023 8E-09 71.7 14.7 125 422-553 249-376 (394)
208 3te6_A Regulatory protein SIR3 97.8 6.8E-05 2.3E-09 72.4 10.1 46 2-47 23-70 (318)
209 3pxg_A Negative regulator of g 97.8 0.00012 4.2E-09 75.4 12.7 45 1-47 182-226 (468)
210 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.5E-10 74.4 5.7 35 425-459 169-205 (267)
211 2p65_A Hypothetical protein PF 97.8 3E-05 1E-09 69.0 6.5 46 1-48 24-69 (187)
212 3co5_A Putative two-component 97.8 7.5E-06 2.6E-10 69.7 2.3 89 1-89 6-115 (143)
213 2bjv_A PSP operon transcriptio 97.7 9.3E-05 3.2E-09 70.2 9.2 45 1-45 8-52 (265)
214 3pxi_A Negative regulator of g 97.7 0.00017 5.8E-09 79.3 12.1 120 1-120 493-675 (758)
215 1lv7_A FTSH; alpha/beta domain 97.7 0.00051 1.7E-08 64.7 13.5 142 1-142 14-219 (257)
216 4gt6_A Cell surface protein; l 97.7 0.0011 3.7E-08 66.8 16.6 77 473-553 289-367 (394)
217 4fcw_A Chaperone protein CLPB; 97.6 0.00036 1.2E-08 67.7 12.0 46 1-46 19-71 (311)
218 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00049 1.7E-08 75.7 14.3 44 1-46 188-231 (758)
219 2r44_A Uncharacterized protein 97.6 0.00041 1.4E-08 68.0 11.5 118 1-122 29-200 (331)
220 1ojl_A Transcriptional regulat 97.6 0.00033 1.1E-08 67.7 10.6 117 1-118 4-188 (304)
221 1io0_A Tropomodulin; LRR prote 97.6 2.7E-05 9.1E-10 69.5 2.5 90 424-530 63-162 (185)
222 2ce7_A Cell division protein F 97.5 0.0008 2.7E-08 68.8 13.5 141 1-141 18-221 (476)
223 4gt6_A Cell surface protein; l 97.5 0.0024 8.4E-08 64.2 16.3 69 491-564 284-354 (394)
224 1qvr_A CLPB protein; coiled co 97.5 0.0003 1E-08 78.3 9.9 44 1-46 172-215 (854)
225 3pxi_A Negative regulator of g 97.4 0.00048 1.6E-08 75.7 11.0 44 1-46 182-225 (758)
226 4h09_A Hypothetical leucine ri 97.4 0.0059 2E-07 60.9 18.2 112 446-563 236-352 (379)
227 2c9o_A RUVB-like 1; hexameric 97.4 0.003 1E-07 64.8 15.6 47 1-47 39-88 (456)
228 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00075 2.6E-08 74.2 11.4 120 1-120 460-666 (758)
229 1ixz_A ATP-dependent metallopr 97.4 0.0025 8.4E-08 59.8 13.6 140 1-140 18-220 (254)
230 2gno_A DNA polymerase III, gam 97.3 0.00059 2E-08 65.8 8.9 115 3-120 1-152 (305)
231 3t15_A Ribulose bisphosphate c 97.3 0.0031 1.1E-07 60.5 14.0 120 20-141 34-219 (293)
232 3cf2_A TER ATPase, transitiona 97.3 0.001 3.4E-08 72.2 11.3 140 2-141 207-407 (806)
233 1iy2_A ATP-dependent metallopr 97.3 0.0047 1.6E-07 58.7 14.6 141 1-141 42-245 (278)
234 2w58_A DNAI, primosome compone 97.2 0.00052 1.8E-08 61.9 6.7 52 6-57 36-89 (202)
235 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.0025 8.5E-08 65.7 12.1 114 1-120 24-196 (500)
236 4h09_A Hypothetical leucine ri 97.1 0.024 8E-07 56.5 18.5 87 473-563 241-329 (379)
237 1g8p_A Magnesium-chelatase 38 97.1 0.0036 1.2E-07 61.7 12.1 44 1-46 26-69 (350)
238 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0036 1.2E-07 64.4 11.5 141 1-141 33-236 (499)
239 1ypw_A Transitional endoplasmi 97.0 0.0025 8.5E-08 70.1 10.9 141 1-141 206-407 (806)
240 2kjq_A DNAA-related protein; s 97.0 0.00078 2.7E-08 57.4 5.3 26 22-47 36-61 (149)
241 1qvr_A CLPB protein; coiled co 97.0 0.0025 8.6E-08 70.9 10.6 89 1-89 560-710 (854)
242 1u0j_A DNA replication protein 96.8 0.0089 3E-07 55.7 11.2 111 8-119 90-250 (267)
243 3hws_A ATP-dependent CLP prote 96.8 0.0011 3.8E-08 65.8 5.4 47 1-47 17-76 (363)
244 3ec2_A DNA replication protein 96.8 0.00077 2.6E-08 59.5 3.8 44 4-47 19-63 (180)
245 2x8a_A Nuclear valosin-contain 96.7 0.015 5.2E-07 55.0 12.7 119 2-120 13-191 (274)
246 3m6a_A ATP-dependent protease 96.7 0.0067 2.3E-07 63.5 11.0 120 1-120 83-266 (543)
247 1rz3_A Hypothetical protein rb 96.7 0.0031 1.1E-07 56.7 7.4 45 3-47 2-47 (201)
248 2r62_A Cell division protease 96.7 0.00066 2.2E-08 64.3 2.7 46 1-46 13-68 (268)
249 3c8u_A Fructokinase; YP_612366 96.7 0.002 6.8E-08 58.4 5.7 42 6-47 6-47 (208)
250 3rfe_A Platelet glycoprotein I 96.4 0.0047 1.6E-07 51.1 6.1 55 356-411 11-67 (130)
251 1qhx_A CPT, protein (chloramph 96.4 0.0013 4.6E-08 57.7 3.0 25 23-47 4-28 (178)
252 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0027 9.4E-08 61.7 5.1 50 1-50 1-52 (359)
253 1odf_A YGR205W, hypothetical 3 96.3 0.0048 1.6E-07 58.9 6.4 30 19-48 28-57 (290)
254 3tlx_A Adenylate kinase 2; str 96.3 0.0042 1.4E-07 57.7 5.7 41 6-46 13-53 (243)
255 3kb2_A SPBC2 prophage-derived 96.3 0.0021 7.1E-08 56.1 3.3 25 23-47 2-26 (173)
256 3cf2_A TER ATPase, transitiona 96.3 0.0034 1.2E-07 68.1 5.5 139 2-140 480-682 (806)
257 1um8_A ATP-dependent CLP prote 96.3 0.0032 1.1E-07 62.9 5.0 46 1-46 23-96 (376)
258 3vaa_A Shikimate kinase, SK; s 96.3 0.0024 8.3E-08 57.3 3.7 25 22-46 25-49 (199)
259 3trf_A Shikimate kinase, SK; a 96.2 0.0024 8.3E-08 56.5 3.4 24 23-46 6-29 (185)
260 2qgz_A Helicase loader, putati 96.2 0.0063 2.2E-07 58.7 6.5 52 6-57 135-188 (308)
261 1nks_A Adenylate kinase; therm 96.2 0.0058 2E-07 54.3 5.6 26 23-48 2-27 (194)
262 3uie_A Adenylyl-sulfate kinase 96.1 0.0069 2.4E-07 54.4 5.7 37 21-57 24-60 (200)
263 3lw7_A Adenylate kinase relate 96.1 0.0029 1E-07 55.2 3.0 22 23-45 2-23 (179)
264 3rfe_A Platelet glycoprotein I 96.1 0.011 3.8E-07 48.8 6.3 55 454-508 12-68 (130)
265 1ly1_A Polynucleotide kinase; 96.0 0.0039 1.3E-07 54.8 3.7 22 23-44 3-24 (181)
266 1ex7_A Guanylate kinase; subst 96.0 0.0019 6.6E-08 57.0 1.7 24 23-46 2-25 (186)
267 2hf9_A Probable hydrogenase ni 96.0 0.011 3.6E-07 54.1 6.7 40 8-49 26-65 (226)
268 3fwy_A Light-independent proto 96.0 0.0069 2.4E-07 58.5 5.6 38 20-57 46-83 (314)
269 2wsm_A Hydrogenase expression/ 96.0 0.0072 2.4E-07 55.1 5.5 45 6-52 16-60 (221)
270 3p32_A Probable GTPase RV1496/ 96.0 0.015 5.1E-07 57.4 8.0 38 10-47 67-104 (355)
271 1xjc_A MOBB protein homolog; s 96.0 0.0075 2.6E-07 52.2 5.1 36 21-56 3-39 (169)
272 2yvu_A Probable adenylyl-sulfa 95.9 0.0084 2.9E-07 53.0 5.5 28 21-48 12-39 (186)
273 1zu4_A FTSY; GTPase, signal re 95.9 0.014 4.9E-07 56.4 7.4 37 21-57 104-140 (320)
274 2rhm_A Putative kinase; P-loop 95.9 0.0053 1.8E-07 54.6 4.0 25 22-46 5-29 (193)
275 1zuh_A Shikimate kinase; alpha 95.9 0.0047 1.6E-07 53.6 3.6 26 22-47 7-32 (168)
276 1vma_A Cell division protein F 95.9 0.016 5.4E-07 55.7 7.4 42 8-49 84-131 (306)
277 3iij_A Coilin-interacting nucl 95.8 0.0036 1.2E-07 55.1 2.7 25 22-46 11-35 (180)
278 1kht_A Adenylate kinase; phosp 95.8 0.0052 1.8E-07 54.5 3.8 26 23-48 4-29 (192)
279 1kgd_A CASK, peripheral plasma 95.8 0.0048 1.6E-07 54.4 3.4 24 23-46 6-29 (180)
280 1tue_A Replication protein E1; 95.8 0.0094 3.2E-07 52.9 5.0 40 6-46 43-82 (212)
281 3umf_A Adenylate kinase; rossm 95.8 0.0068 2.3E-07 54.9 4.2 27 20-46 27-53 (217)
282 2ze6_A Isopentenyl transferase 95.8 0.0056 1.9E-07 57.3 3.8 25 23-47 2-26 (253)
283 1via_A Shikimate kinase; struc 95.8 0.0043 1.5E-07 54.3 2.8 24 24-47 6-29 (175)
284 4eun_A Thermoresistant glucoki 95.8 0.0084 2.9E-07 53.8 4.8 25 22-46 29-53 (200)
285 1zp6_A Hypothetical protein AT 95.7 0.0056 1.9E-07 54.4 3.5 24 22-45 9-32 (191)
286 2cvh_A DNA repair and recombin 95.7 0.018 6E-07 52.3 7.0 58 10-70 8-65 (220)
287 3e70_C DPA, signal recognition 95.7 0.018 6.1E-07 55.9 7.2 28 21-48 128-155 (328)
288 2jaq_A Deoxyguanosine kinase; 95.7 0.0055 1.9E-07 55.0 3.4 24 24-47 2-25 (205)
289 2plr_A DTMP kinase, probable t 95.7 0.011 3.9E-07 53.3 5.5 28 23-50 5-32 (213)
290 1kag_A SKI, shikimate kinase I 95.7 0.0042 1.4E-07 54.2 2.5 25 23-47 5-29 (173)
291 1gvn_B Zeta; postsegregational 95.7 0.011 3.8E-07 56.3 5.6 27 20-46 31-57 (287)
292 3t61_A Gluconokinase; PSI-biol 95.7 0.0047 1.6E-07 55.5 2.8 25 22-46 18-42 (202)
293 1g41_A Heat shock protein HSLU 95.6 0.011 3.7E-07 59.6 5.4 49 1-49 17-77 (444)
294 1nn5_A Similar to deoxythymidy 95.6 0.012 4.1E-07 53.3 5.3 28 22-49 9-36 (215)
295 2c95_A Adenylate kinase 1; tra 95.6 0.0064 2.2E-07 54.2 3.3 24 23-46 10-33 (196)
296 1pgv_A TMD-1, tropomodulin TMD 95.6 0.0076 2.6E-07 53.5 3.7 65 490-554 93-168 (197)
297 1ukz_A Uridylate kinase; trans 95.6 0.0089 3E-07 53.7 4.2 27 20-46 13-39 (203)
298 2iyv_A Shikimate kinase, SK; t 95.6 0.0053 1.8E-07 54.2 2.7 24 24-47 4-27 (184)
299 2bdt_A BH3686; alpha-beta prot 95.6 0.011 3.9E-07 52.3 4.9 31 23-57 3-33 (189)
300 3dm5_A SRP54, signal recogniti 95.6 0.024 8.3E-07 57.0 7.7 36 21-56 99-134 (443)
301 3cm0_A Adenylate kinase; ATP-b 95.5 0.0089 3.1E-07 52.8 4.1 25 22-46 4-28 (186)
302 2qor_A Guanylate kinase; phosp 95.5 0.0067 2.3E-07 54.6 3.3 25 22-46 12-36 (204)
303 1tev_A UMP-CMP kinase; ploop, 95.5 0.0088 3E-07 53.2 4.1 24 23-46 4-27 (196)
304 3tau_A Guanylate kinase, GMP k 95.5 0.0077 2.6E-07 54.4 3.7 25 22-46 8-32 (208)
305 1y63_A LMAJ004144AAA protein; 95.5 0.008 2.7E-07 53.1 3.7 25 21-45 9-33 (184)
306 1e6c_A Shikimate kinase; phosp 95.5 0.0062 2.1E-07 53.1 2.8 25 23-47 3-27 (173)
307 1knq_A Gluconate kinase; ALFA/ 95.5 0.0091 3.1E-07 52.2 3.8 25 22-46 8-32 (175)
308 2xxa_A Signal recognition part 95.5 0.024 8.3E-07 57.2 7.4 43 7-49 78-127 (433)
309 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0093 3.2E-07 56.0 4.0 26 22-47 4-29 (260)
310 1j8m_F SRP54, signal recogniti 95.5 0.021 7.3E-07 54.6 6.6 36 22-57 98-133 (297)
311 2vli_A Antibiotic resistance p 95.5 0.0048 1.6E-07 54.4 1.9 26 22-47 5-30 (183)
312 2pt5_A Shikimate kinase, SK; a 95.4 0.0091 3.1E-07 51.7 3.7 24 24-47 2-25 (168)
313 2bwj_A Adenylate kinase 5; pho 95.4 0.0089 3E-07 53.4 3.7 25 23-47 13-37 (199)
314 3kl4_A SRP54, signal recogniti 95.4 0.023 7.7E-07 57.2 6.8 29 21-49 96-124 (433)
315 4a74_A DNA repair and recombin 95.4 0.028 9.5E-07 51.4 7.0 63 10-72 13-81 (231)
316 1aky_A Adenylate kinase; ATP:A 95.4 0.0087 3E-07 54.6 3.4 25 23-47 5-29 (220)
317 2cdn_A Adenylate kinase; phosp 95.4 0.0097 3.3E-07 53.4 3.7 26 22-47 20-45 (201)
318 1uf9_A TT1252 protein; P-loop, 95.4 0.011 3.6E-07 53.1 3.9 26 20-45 6-31 (203)
319 2p5t_B PEZT; postsegregational 95.4 0.014 4.7E-07 54.6 4.8 28 20-47 30-57 (253)
320 2px0_A Flagellar biosynthesis 95.3 0.016 5.4E-07 55.5 5.2 27 21-47 104-130 (296)
321 2r8r_A Sensor protein; KDPD, P 95.3 0.028 9.7E-07 50.8 6.5 46 24-70 8-54 (228)
322 3ney_A 55 kDa erythrocyte memb 95.3 0.01 3.5E-07 52.8 3.6 26 21-46 18-43 (197)
323 1n0w_A DNA repair protein RAD5 95.3 0.028 9.6E-07 51.8 6.8 51 10-60 12-68 (243)
324 1qf9_A UMP/CMP kinase, protein 95.3 0.011 3.9E-07 52.3 3.9 26 22-47 6-31 (194)
325 3b9q_A Chloroplast SRP recepto 95.3 0.031 1.1E-06 53.5 7.1 37 21-58 99-135 (302)
326 3tr0_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 53.0 3.7 24 23-46 8-31 (205)
327 3a00_A Guanylate kinase, GMP k 95.2 0.0075 2.6E-07 53.4 2.4 25 23-47 2-26 (186)
328 2j41_A Guanylate kinase; GMP, 95.2 0.011 3.8E-07 53.1 3.6 24 23-46 7-30 (207)
329 2pbr_A DTMP kinase, thymidylat 95.2 0.019 6.6E-07 50.9 5.2 25 24-48 2-26 (195)
330 2wwf_A Thymidilate kinase, put 95.2 0.012 4E-07 53.2 3.6 27 22-48 10-36 (212)
331 2bbw_A Adenylate kinase 4, AK4 95.2 0.012 4.2E-07 54.6 3.9 25 22-46 27-51 (246)
332 1cke_A CK, MSSA, protein (cyti 95.2 0.013 4.3E-07 53.7 3.8 25 23-47 6-30 (227)
333 1ye8_A Protein THEP1, hypothet 95.1 0.014 4.9E-07 51.1 4.0 24 24-47 2-25 (178)
334 3end_A Light-independent proto 95.1 0.021 7.3E-07 55.0 5.6 48 10-57 27-76 (307)
335 3hr8_A Protein RECA; alpha and 95.1 0.038 1.3E-06 54.1 7.3 54 9-62 47-101 (356)
336 1zak_A Adenylate kinase; ATP:A 95.1 0.0091 3.1E-07 54.5 2.8 26 22-47 5-30 (222)
337 2if2_A Dephospho-COA kinase; a 95.1 0.011 3.9E-07 53.0 3.4 22 23-44 2-23 (204)
338 3k1j_A LON protease, ATP-depen 95.1 0.022 7.6E-07 60.5 6.1 46 1-50 43-88 (604)
339 3asz_A Uridine kinase; cytidin 95.1 0.015 5.3E-07 52.4 4.2 27 21-47 5-31 (211)
340 2qt1_A Nicotinamide riboside k 95.1 0.012 4.1E-07 53.0 3.4 26 20-45 19-44 (207)
341 2dr3_A UPF0273 protein PH0284; 95.1 0.013 4.6E-07 54.2 3.8 36 23-58 24-59 (247)
342 1zd8_A GTP:AMP phosphotransfer 95.1 0.012 4.2E-07 53.9 3.5 25 22-46 7-31 (227)
343 1lvg_A Guanylate kinase, GMP k 95.1 0.01 3.5E-07 53.1 2.8 24 23-46 5-28 (198)
344 3tqc_A Pantothenate kinase; bi 95.0 0.021 7.2E-07 55.1 5.1 28 20-47 90-117 (321)
345 2j37_W Signal recognition part 95.0 0.04 1.4E-06 56.6 7.4 51 9-59 81-139 (504)
346 1rj9_A FTSY, signal recognitio 95.0 0.024 8.1E-07 54.4 5.4 36 21-57 101-136 (304)
347 2og2_A Putative signal recogni 95.0 0.04 1.4E-06 54.0 7.1 36 21-57 156-191 (359)
348 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.016 5.6E-07 53.0 4.2 35 23-57 24-58 (235)
349 3fb4_A Adenylate kinase; psych 95.0 0.015 5.1E-07 52.7 3.8 23 24-46 2-24 (216)
350 1uj2_A Uridine-cytidine kinase 95.0 0.016 5.5E-07 54.0 4.0 28 20-47 20-47 (252)
351 4gp7_A Metallophosphoesterase; 94.9 0.013 4.4E-07 51.1 3.0 21 23-43 10-30 (171)
352 1yrb_A ATP(GTP)binding protein 94.9 0.028 9.7E-07 52.6 5.7 27 21-47 13-39 (262)
353 2z0h_A DTMP kinase, thymidylat 94.9 0.017 5.7E-07 51.5 3.8 25 24-48 2-26 (197)
354 2pez_A Bifunctional 3'-phospho 94.9 0.033 1.1E-06 48.8 5.6 26 22-47 5-30 (179)
355 3sr0_A Adenylate kinase; phosp 94.9 0.017 5.7E-07 52.0 3.7 23 24-46 2-24 (206)
356 2grj_A Dephospho-COA kinase; T 94.9 0.018 6.2E-07 51.1 3.9 25 22-46 12-36 (192)
357 3dl0_A Adenylate kinase; phosp 94.9 0.016 5.5E-07 52.5 3.6 23 24-46 2-24 (216)
358 1u94_A RECA protein, recombina 94.8 0.027 9.1E-07 55.3 5.3 39 23-61 64-102 (356)
359 1m7g_A Adenylylsulfate kinase; 94.8 0.021 7.1E-07 51.7 4.3 27 21-47 24-50 (211)
360 1gtv_A TMK, thymidylate kinase 94.8 0.0087 3E-07 54.2 1.7 24 24-47 2-25 (214)
361 2v3c_C SRP54, signal recogniti 94.8 0.02 6.8E-07 57.8 4.4 27 22-48 99-125 (432)
362 3nwj_A ATSK2; P loop, shikimat 94.8 0.013 4.4E-07 54.5 2.8 25 23-47 49-73 (250)
363 1np6_A Molybdopterin-guanine d 94.8 0.031 1.1E-06 48.7 5.1 33 22-54 6-39 (174)
364 1jjv_A Dephospho-COA kinase; P 94.8 0.017 5.7E-07 52.0 3.5 22 23-44 3-24 (206)
365 4e22_A Cytidylate kinase; P-lo 94.8 0.017 5.7E-07 53.9 3.6 25 22-46 27-51 (252)
366 2zr9_A Protein RECA, recombina 94.8 0.028 9.6E-07 55.1 5.2 39 22-60 61-99 (349)
367 3be4_A Adenylate kinase; malar 94.7 0.016 5.3E-07 52.7 3.1 24 23-46 6-29 (217)
368 2yhs_A FTSY, cell division pro 94.7 0.048 1.6E-06 55.5 6.8 36 21-57 292-327 (503)
369 2v54_A DTMP kinase, thymidylat 94.7 0.018 6.1E-07 51.6 3.4 24 23-46 5-28 (204)
370 3d3q_A TRNA delta(2)-isopenten 94.7 0.019 6.6E-07 55.6 3.7 25 23-47 8-32 (340)
371 3io5_A Recombination and repai 94.7 0.067 2.3E-06 50.9 7.3 41 24-64 30-72 (333)
372 3aez_A Pantothenate kinase; tr 94.6 0.02 6.8E-07 55.2 3.8 29 20-48 88-116 (312)
373 1ak2_A Adenylate kinase isoenz 94.6 0.02 7E-07 52.6 3.7 26 22-47 16-41 (233)
374 1cp2_A CP2, nitrogenase iron p 94.6 0.037 1.3E-06 52.0 5.6 35 23-57 2-36 (269)
375 3r20_A Cytidylate kinase; stru 94.6 0.02 6.8E-07 52.4 3.5 25 23-47 10-34 (233)
376 1pgv_A TMD-1, tropomodulin TMD 94.6 0.014 4.7E-07 51.8 2.4 75 486-560 61-143 (197)
377 2eyu_A Twitching motility prot 94.6 0.034 1.2E-06 52.1 5.1 36 22-57 25-60 (261)
378 3a8t_A Adenylate isopentenyltr 94.6 0.012 4E-07 56.9 1.9 24 23-46 41-64 (339)
379 3crm_A TRNA delta(2)-isopenten 94.6 0.017 5.6E-07 55.6 3.0 24 23-46 6-29 (323)
380 2xb4_A Adenylate kinase; ATP-b 94.6 0.022 7.7E-07 51.9 3.8 23 24-46 2-24 (223)
381 1e4v_A Adenylate kinase; trans 94.6 0.022 7.5E-07 51.6 3.7 23 24-46 2-24 (214)
382 1znw_A Guanylate kinase, GMP k 94.5 0.019 6.4E-07 51.8 3.2 24 23-46 21-44 (207)
383 1z6g_A Guanylate kinase; struc 94.5 0.017 5.8E-07 52.6 2.8 24 23-46 24-47 (218)
384 3bh0_A DNAB-like replicative h 94.5 0.047 1.6E-06 52.8 6.0 36 22-57 68-103 (315)
385 2jeo_A Uridine-cytidine kinase 94.5 0.025 8.4E-07 52.5 3.9 26 21-46 24-49 (245)
386 3ice_A Transcription terminati 94.5 0.076 2.6E-06 52.0 7.3 63 23-91 175-238 (422)
387 1s96_A Guanylate kinase, GMP k 94.5 0.023 7.7E-07 51.7 3.5 26 22-47 16-41 (219)
388 1vht_A Dephospho-COA kinase; s 94.4 0.026 9E-07 51.2 4.0 22 23-44 5-26 (218)
389 2ehv_A Hypothetical protein PH 94.4 0.035 1.2E-06 51.5 4.9 35 23-57 31-66 (251)
390 1v5w_A DMC1, meiotic recombina 94.4 0.12 4E-06 50.6 8.9 60 11-70 111-176 (343)
391 2afh_E Nitrogenase iron protei 94.4 0.042 1.4E-06 52.4 5.5 36 22-57 2-37 (289)
392 2p67_A LAO/AO transport system 94.4 0.078 2.7E-06 51.8 7.6 30 19-48 53-82 (341)
393 2f6r_A COA synthase, bifunctio 94.4 0.025 8.4E-07 53.7 3.8 24 21-44 74-97 (281)
394 2z43_A DNA repair and recombin 94.4 0.074 2.5E-06 51.6 7.3 49 23-71 108-162 (324)
395 1g8f_A Sulfate adenylyltransfe 94.4 0.036 1.2E-06 56.9 5.2 45 4-48 377-421 (511)
396 3ake_A Cytidylate kinase; CMP 94.4 0.025 8.6E-07 50.8 3.6 24 24-47 4-27 (208)
397 1htw_A HI0065; nucleotide-bind 94.4 0.026 9E-07 48.3 3.5 26 21-46 32-57 (158)
398 3exa_A TRNA delta(2)-isopenten 94.3 0.026 8.8E-07 53.8 3.7 24 23-46 4-27 (322)
399 1ls1_A Signal recognition part 94.3 0.045 1.6E-06 52.2 5.5 37 21-57 97-133 (295)
400 2f1r_A Molybdopterin-guanine d 94.3 0.015 5.3E-07 50.5 2.0 26 23-48 3-28 (171)
401 4eaq_A DTMP kinase, thymidylat 94.3 0.049 1.7E-06 49.9 5.4 28 21-48 25-52 (229)
402 2ged_A SR-beta, signal recogni 94.3 0.047 1.6E-06 48.2 5.2 25 21-45 47-71 (193)
403 3foz_A TRNA delta(2)-isopenten 94.3 0.029 1E-06 53.3 3.9 26 21-46 9-34 (316)
404 4hlc_A DTMP kinase, thymidylat 94.2 0.049 1.7E-06 48.9 5.2 31 23-53 3-33 (205)
405 2i3b_A HCR-ntpase, human cance 94.2 0.026 9E-07 49.9 3.3 24 24-47 3-26 (189)
406 1svm_A Large T antigen; AAA+ f 94.2 0.048 1.6E-06 53.9 5.4 27 20-46 167-193 (377)
407 2vhj_A Ntpase P4, P4; non- hyd 94.2 0.031 1.1E-06 53.5 3.9 23 23-45 124-146 (331)
408 1xp8_A RECA protein, recombina 94.1 0.049 1.7E-06 53.6 5.2 40 23-62 75-114 (366)
409 1ltq_A Polynucleotide kinase; 94.1 0.031 1E-06 53.6 3.7 23 23-45 3-25 (301)
410 1cr0_A DNA primase/helicase; R 94.0 0.05 1.7E-06 52.0 5.1 26 23-48 36-61 (296)
411 1nlf_A Regulatory protein REPA 94.0 0.053 1.8E-06 51.4 5.2 25 23-47 31-55 (279)
412 2orw_A Thymidine kinase; TMTK, 94.0 0.055 1.9E-06 47.6 4.9 25 23-47 4-28 (184)
413 1pzn_A RAD51, DNA repair and r 94.0 0.12 3.9E-06 50.7 7.7 53 21-73 130-188 (349)
414 3fkq_A NTRC-like two-domain pr 93.9 0.1 3.5E-06 51.7 7.4 38 20-57 141-179 (373)
415 2dyk_A GTP-binding protein; GT 93.8 0.04 1.4E-06 46.8 3.7 23 23-45 2-24 (161)
416 1jr3_D DNA polymerase III, del 93.8 0.31 1.1E-05 47.5 10.6 135 11-147 9-184 (343)
417 1oix_A RAS-related protein RAB 93.8 0.036 1.2E-06 49.1 3.4 24 22-45 29-52 (191)
418 3lnc_A Guanylate kinase, GMP k 93.8 0.021 7.3E-07 52.4 2.0 24 23-46 28-52 (231)
419 1sq5_A Pantothenate kinase; P- 93.8 0.04 1.4E-06 53.1 3.9 28 20-47 78-105 (308)
420 3hjn_A DTMP kinase, thymidylat 93.7 0.18 6.3E-06 44.7 8.0 34 24-57 2-35 (197)
421 4a1f_A DNAB helicase, replicat 93.7 0.072 2.5E-06 51.7 5.6 35 23-57 47-81 (338)
422 3io3_A DEHA2D07832P; chaperone 93.7 0.076 2.6E-06 51.9 5.7 38 20-57 16-55 (348)
423 2axn_A 6-phosphofructo-2-kinas 93.6 0.072 2.5E-06 55.2 5.8 30 21-50 34-63 (520)
424 2wji_A Ferrous iron transport 93.6 0.048 1.6E-06 46.8 3.8 22 23-44 4-25 (165)
425 1tq4_A IIGP1, interferon-induc 93.6 0.04 1.4E-06 55.1 3.6 36 9-44 56-91 (413)
426 1a7j_A Phosphoribulokinase; tr 93.6 0.025 8.5E-07 54.0 2.0 26 22-47 5-30 (290)
427 2onk_A Molybdate/tungstate ABC 93.6 0.039 1.3E-06 50.9 3.3 34 23-57 25-58 (240)
428 3eph_A TRNA isopentenyltransfe 93.6 0.045 1.6E-06 54.1 3.9 25 23-47 3-27 (409)
429 3dzd_A Transcriptional regulat 93.6 0.25 8.6E-06 48.7 9.4 117 1-118 131-314 (368)
430 2ffh_A Protein (FFH); SRP54, s 93.5 0.081 2.8E-06 53.0 5.7 37 21-57 97-133 (425)
431 2qm8_A GTPase/ATPase; G protei 93.5 0.13 4.6E-06 50.0 7.2 28 20-47 53-80 (337)
432 1fzq_A ADP-ribosylation factor 93.5 0.06 2.1E-06 47.1 4.3 25 20-44 14-38 (181)
433 2f9l_A RAB11B, member RAS onco 93.5 0.045 1.5E-06 48.8 3.5 24 22-45 5-28 (199)
434 2gks_A Bifunctional SAT/APS ki 93.4 0.1 3.4E-06 54.4 6.5 43 6-48 356-398 (546)
435 2zej_A Dardarin, leucine-rich 93.4 0.039 1.3E-06 48.4 2.9 21 24-44 4-24 (184)
436 1q3t_A Cytidylate kinase; nucl 93.4 0.054 1.8E-06 49.8 4.0 27 20-46 14-40 (236)
437 3cr8_A Sulfate adenylyltranfer 93.4 0.066 2.3E-06 55.7 5.0 27 22-48 369-395 (552)
438 2qmh_A HPR kinase/phosphorylas 93.3 0.043 1.5E-06 48.5 3.0 23 23-45 35-57 (205)
439 2ocp_A DGK, deoxyguanosine kin 93.3 0.055 1.9E-06 50.0 4.0 26 22-47 2-27 (241)
440 3b85_A Phosphate starvation-in 93.3 0.067 2.3E-06 48.1 4.4 22 24-45 24-45 (208)
441 3lda_A DNA repair protein RAD5 93.3 0.12 4.2E-06 51.4 6.7 50 23-72 179-234 (400)
442 2oze_A ORF delta'; para, walke 93.3 0.099 3.4E-06 49.9 5.8 49 6-57 21-72 (298)
443 3iqw_A Tail-anchored protein t 93.3 0.089 3.1E-06 51.1 5.5 38 20-57 14-51 (334)
444 3kjh_A CO dehydrogenase/acetyl 93.3 0.074 2.5E-06 49.2 4.8 33 25-57 3-35 (254)
445 3ea0_A ATPase, para family; al 93.2 0.11 3.6E-06 48.0 5.7 37 21-57 3-41 (245)
446 3tif_A Uncharacterized ABC tra 93.2 0.046 1.6E-06 50.3 3.1 34 23-57 32-65 (235)
447 2pcj_A ABC transporter, lipopr 93.2 0.04 1.4E-06 50.3 2.7 34 23-57 31-64 (224)
448 4edh_A DTMP kinase, thymidylat 93.2 0.11 3.6E-06 47.0 5.5 26 23-48 7-32 (213)
449 4dzz_A Plasmid partitioning pr 93.2 0.084 2.9E-06 47.1 4.8 35 23-57 2-37 (206)
450 1ypw_A Transitional endoplasmi 93.1 0.034 1.2E-06 61.1 2.5 48 2-49 480-538 (806)
451 3bfv_A CAPA1, CAPB2, membrane 93.1 0.16 5.6E-06 47.7 6.9 52 6-57 64-118 (271)
452 3bgw_A DNAB-like replicative h 93.1 0.087 3E-06 53.5 5.3 36 22-57 197-232 (444)
453 2wjg_A FEOB, ferrous iron tran 93.1 0.064 2.2E-06 47.0 3.8 24 22-45 7-30 (188)
454 3zvl_A Bifunctional polynucleo 93.1 0.039 1.3E-06 55.6 2.6 26 21-46 257-282 (416)
455 2ce2_X GTPase HRAS; signaling 93.0 0.052 1.8E-06 46.2 3.1 22 24-45 5-26 (166)
456 1z2a_A RAS-related protein RAB 93.0 0.071 2.4E-06 45.6 4.0 24 22-45 5-28 (168)
457 3def_A T7I23.11 protein; chlor 93.0 0.11 3.8E-06 48.6 5.6 35 10-44 24-58 (262)
458 3cio_A ETK, tyrosine-protein k 93.0 0.16 5.4E-06 48.6 6.7 38 20-57 102-140 (299)
459 2zts_A Putative uncharacterize 93.0 0.11 3.7E-06 48.0 5.4 35 23-57 31-66 (251)
460 3fdi_A Uncharacterized protein 93.0 0.056 1.9E-06 48.3 3.3 25 23-47 7-31 (201)
461 2r6a_A DNAB helicase, replicat 92.9 0.097 3.3E-06 53.4 5.4 35 23-57 204-239 (454)
462 2b8t_A Thymidine kinase; deoxy 92.9 0.12 4.1E-06 46.9 5.4 36 21-56 11-46 (223)
463 3gfo_A Cobalt import ATP-bindi 92.9 0.054 1.9E-06 51.0 3.2 34 23-57 35-68 (275)
464 2cbz_A Multidrug resistance-as 92.9 0.054 1.9E-06 49.8 3.1 34 23-57 32-65 (237)
465 2d2e_A SUFC protein; ABC-ATPas 92.9 0.057 2E-06 50.2 3.3 35 23-57 30-65 (250)
466 3upu_A ATP-dependent DNA helic 92.8 0.15 5.3E-06 52.0 6.8 42 7-51 33-74 (459)
467 3gmt_A Adenylate kinase; ssgci 92.8 0.075 2.5E-06 48.3 3.9 23 24-46 10-32 (230)
468 1mv5_A LMRA, multidrug resista 92.8 0.055 1.9E-06 50.1 3.0 35 22-57 28-62 (243)
469 3con_A GTPase NRAS; structural 92.8 0.06 2E-06 47.4 3.2 23 23-45 22-44 (190)
470 3zq6_A Putative arsenical pump 92.8 0.092 3.1E-06 50.9 4.8 36 22-57 14-49 (324)
471 1b0u_A Histidine permease; ABC 92.7 0.058 2E-06 50.5 3.2 34 23-57 33-66 (262)
472 2zu0_C Probable ATP-dependent 92.7 0.062 2.1E-06 50.5 3.3 35 23-57 47-82 (267)
473 2www_A Methylmalonic aciduria 92.7 0.13 4.3E-06 50.5 5.7 28 21-48 73-100 (349)
474 1nrj_B SR-beta, signal recogni 92.7 0.07 2.4E-06 48.2 3.6 26 20-45 10-35 (218)
475 1m8p_A Sulfate adenylyltransfe 92.7 0.1 3.5E-06 54.7 5.3 28 21-48 395-422 (573)
476 1ji0_A ABC transporter; ATP bi 92.7 0.053 1.8E-06 50.0 2.8 34 23-57 33-66 (240)
477 2pze_A Cystic fibrosis transme 92.6 0.053 1.8E-06 49.6 2.7 34 23-57 35-68 (229)
478 2i1q_A DNA repair and recombin 92.6 0.18 6.2E-06 48.7 6.7 25 22-46 98-122 (322)
479 1bif_A 6-phosphofructo-2-kinas 92.6 0.12 4.1E-06 53.0 5.6 29 22-50 39-67 (469)
480 1sgw_A Putative ABC transporte 92.6 0.047 1.6E-06 49.4 2.2 34 23-57 36-69 (214)
481 3ld9_A DTMP kinase, thymidylat 92.6 0.091 3.1E-06 47.7 4.2 28 21-48 20-47 (223)
482 4g1u_C Hemin import ATP-bindin 92.6 0.062 2.1E-06 50.4 3.1 34 23-57 38-71 (266)
483 2olj_A Amino acid ABC transpor 92.6 0.056 1.9E-06 50.6 2.8 34 23-57 51-84 (263)
484 1g6h_A High-affinity branched- 92.6 0.055 1.9E-06 50.5 2.8 34 23-57 34-67 (257)
485 2yv5_A YJEQ protein; hydrolase 92.6 0.1 3.4E-06 50.0 4.7 21 23-43 166-186 (302)
486 2nzj_A GTP-binding protein REM 92.6 0.09 3.1E-06 45.3 4.0 23 22-44 4-26 (175)
487 1u8z_A RAS-related protein RAL 92.6 0.069 2.3E-06 45.6 3.2 23 23-45 5-27 (168)
488 1r8s_A ADP-ribosylation factor 92.6 0.073 2.5E-06 45.3 3.4 22 24-45 2-23 (164)
489 2v9p_A Replication protein E1; 92.5 0.069 2.3E-06 51.0 3.4 25 22-46 126-150 (305)
490 2fn4_A P23, RAS-related protei 92.5 0.1 3.5E-06 45.2 4.3 26 20-45 7-32 (181)
491 3ihw_A Centg3; RAS, centaurin, 92.5 0.069 2.4E-06 46.8 3.3 24 22-45 20-43 (184)
492 1h65_A Chloroplast outer envel 92.5 0.14 4.7E-06 48.2 5.5 26 20-45 37-62 (270)
493 1kao_A RAP2A; GTP-binding prot 92.5 0.073 2.5E-06 45.4 3.3 22 24-45 5-26 (167)
494 1c1y_A RAS-related protein RAP 92.4 0.073 2.5E-06 45.4 3.2 22 24-45 5-26 (167)
495 1z08_A RAS-related protein RAB 92.4 0.073 2.5E-06 45.6 3.3 24 22-45 6-29 (170)
496 2ff7_A Alpha-hemolysin translo 92.4 0.067 2.3E-06 49.6 3.1 34 23-57 36-69 (247)
497 3q85_A GTP-binding protein REM 92.4 0.091 3.1E-06 45.0 3.8 21 23-43 3-23 (169)
498 2gj8_A MNME, tRNA modification 92.4 0.072 2.5E-06 46.1 3.2 22 23-44 5-26 (172)
499 3v9p_A DTMP kinase, thymidylat 92.4 0.065 2.2E-06 48.8 2.9 27 22-48 25-51 (227)
500 1vpl_A ABC transporter, ATP-bi 92.4 0.061 2.1E-06 50.1 2.8 34 23-57 42-75 (256)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-37 Score=331.32 Aligned_cols=255 Identities=15% Similarity=0.159 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHhccc-CCCeEEEEEEcCCCChHHHHHHHHHH----HHhccCCceEEEEcCccc---cHHH-------
Q 008394 2 VGVESIVEEIESLLAVE-SKDVYCLGIWGIGGIGKTTIARAIFD----KISSDFEGSCFLENVREE---SQDQ------- 66 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~-~~~~~~i~I~G~gGvGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~---~~~~------- 66 (567)
|||++++++|.++|... .++.++|+|+||||+||||||+++|+ +++.+|++++|++..... ....
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 34679999999999999999999997 588999999999655432 1100
Q ss_pred ---------------------HHHHHhhc----CC---------------C-CCCceEEEEeCChhhhhccC-cccEEEc
Q 008394 67 ---------------------EESLIESL----DW---------------L-TPVCRIIITTRNKQVLRNWG-VRKIYEM 104 (567)
Q Consensus 67 ---------------------~~~l~~~~----~~---------------~-~~~~~ilvTtR~~~~~~~~~-~~~~~~l 104 (567)
.+.+...+ ++ . .+||+||||||++.++..++ ...++++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l 290 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEV 290 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEEC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEEC
Confidence 11222111 11 0 27999999999999998875 3467999
Q ss_pred CCCCHHHHHHHHHHhhccCCC-Ch--HHHHHHHHHcCCCchHHHHHHHHhccCCHHHHHHHHHHHhhcCchhHHHHHHHH
Q 008394 105 EALEYHHALELFSRHAFKQNH-PD--ELSSKAVKYAQGVPLALKVLGCFLYKMEKEVWDSAINKLQRIHHPSILQILKIS 181 (567)
Q Consensus 105 ~~L~~~~~~~l~~~~~~~~~~-~~--~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~l~~~l~~s 181 (567)
++|++++||+||.++++.... +. +++++|+++|+|+||||+++|+.++.++.+.+......+.......+..++..|
T Consensus 291 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~S 370 (549)
T 2a5y_B 291 TSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYS 370 (549)
T ss_dssp CCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSS
T ss_pred CCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcc
Confidence 999999999999999987653 22 289999999999999999999999877533222222223332445677778888
Q ss_pred HhcCCHHHHHHHH-----------hhcccCCCCChhHHHHHhhhc--CCCch-----------hhhHHHhhcCCeEEec-
Q 008394 182 YDGLDDKEKNIFL-----------DVACFFQGEDVNPVMKFLNAS--GFYPE-----------IGISVLVDKSLIVISN- 236 (567)
Q Consensus 182 ~~~L~~~~k~~~~-----------~~~~fp~~~~~~~l~~~w~~~--~~~~~-----------~~l~~L~~~~lv~~~~- 236 (567)
|+.||++.|.||. |||+||++++++ ++.|+++ |++.. .++++|+++||++..+
T Consensus 371 y~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~ 448 (549)
T 2a5y_B 371 YKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKR 448 (549)
T ss_dssp SSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEEC
T ss_pred cccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 8888888888888 999999999988 7899999 77642 2499999999999865
Q ss_pred --CCcEEehHHHHHHHHHHhhhhc
Q 008394 237 --NNKITMHDWLQELGRDIVSQES 258 (567)
Q Consensus 237 --~~~~~~H~~v~~~~~~~~~~~~ 258 (567)
..+|+|||+||++|++++.+++
T Consensus 449 ~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 449 MPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCceEEEeChHHHHHHHHHHHHHH
Confidence 3479999999999999888774
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-32 Score=320.98 Aligned_cols=257 Identities=19% Similarity=0.307 Sum_probs=206.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH---HhccCCceE-EEEcCccccH------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK---ISSDFEGSC-FLENVREESQ------------ 64 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~---~~~~f~~~~-~~~~~~~~~~------------ 64 (567)
||||++++++|.++|...+++.++|+|+||||+||||||+++|++ ...+|+..+ |++.......
T Consensus 126 ~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 205 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 205 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHH
Confidence 799999999999999776677899999999999999999999986 455676555 6654332111
Q ss_pred ----------------HHHHHHHhhc--------------------CCCCCCceEEEEeCChhhhhc-cCcccEEEcCC-
Q 008394 65 ----------------DQEESLIESL--------------------DWLTPVCRIIITTRNKQVLRN-WGVRKIYEMEA- 106 (567)
Q Consensus 65 ----------------~~~~~l~~~~--------------------~~~~~~~~ilvTtR~~~~~~~-~~~~~~~~l~~- 106 (567)
...+.+...+ ...++||+||||||++.++.. ......+++++
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~ 285 (1249)
T 3sfz_A 206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESG 285 (1249)
T ss_dssp HTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSS
T ss_pred hhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCC
Confidence 1112222111 113689999999999999855 45556899996
Q ss_pred CCHHHHHHHHHHhhccCCC-ChHHHHHHHHHcCCCchHHHHHHHHhccCCHHHHHHHHHHHhhcC-----------chhH
Q 008394 107 LEYHHALELFSRHAFKQNH-PDELSSKAVKYAQGVPLALKVLGCFLYKMEKEVWDSAINKLQRIH-----------HPSI 174 (567)
Q Consensus 107 L~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~-----------~~~l 174 (567)
|++++|+++|...++.... ..+.+++|+++|+|+||||+.+|++|+.++ ..|..++..+.... ...+
T Consensus 286 l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 364 (1249)
T 3sfz_A 286 LGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEAL 364 (1249)
T ss_dssp CCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHH
T ss_pred CCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHH
Confidence 9999999999998854432 223799999999999999999999999875 47888888876433 1468
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccCCCCCh--hHHHHHhhhcCCCchhhhHHHhhcCCeEEecCC---cEEehHHHHHH
Q 008394 175 LQILKISYDGLDDKEKNIFLDVACFFQGEDV--NPVMKFLNASGFYPEIGISVLVDKSLIVISNNN---KITMHDWLQEL 249 (567)
Q Consensus 175 ~~~l~~s~~~L~~~~k~~~~~~~~fp~~~~~--~~l~~~w~~~~~~~~~~l~~L~~~~lv~~~~~~---~~~~H~~v~~~ 249 (567)
..++..||+.||++.|.||+|||+||+++.+ +.++.+|.+++...+..+++|+++||++....+ .|+||+++|++
T Consensus 365 ~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~ 444 (1249)
T 3sfz_A 365 DEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444 (1249)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHH
Confidence 9999999999999999999999999999866 578899988877778889999999999987655 49999999999
Q ss_pred HHHHhhhhc
Q 008394 250 GRDIVSQES 258 (567)
Q Consensus 250 ~~~~~~~~~ 258 (567)
+++.+.++.
T Consensus 445 ~~~~~~~~~ 453 (1249)
T 3sfz_A 445 LTEKNRSQL 453 (1249)
T ss_dssp HHHHTGGGH
T ss_pred HHhhhhHHH
Confidence 999877663
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1e-30 Score=281.99 Aligned_cols=236 Identities=17% Similarity=0.163 Sum_probs=183.4
Q ss_pred CCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH--HhccCCc-eEEEEcCccccH-H------------
Q 008394 2 VGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK--ISSDFEG-SCFLENVREESQ-D------------ 65 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~--~~~~f~~-~~~~~~~~~~~~-~------------ 65 (567)
|||++++++|.++|... +..++|+|+||||+||||||+++|++ ++.+|+. ++|++....... .
T Consensus 131 VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 89999999999999753 34789999999999999999999974 7889997 788764332211 0
Q ss_pred ----------------H----HHHHHhhc------CC---------------CCCCceEEEEeCChhhhhccCcccEEEc
Q 008394 66 ----------------Q----EESLIESL------DW---------------LTPVCRIIITTRNKQVLRNWGVRKIYEM 104 (567)
Q Consensus 66 ----------------~----~~~l~~~~------~~---------------~~~~~~ilvTtR~~~~~~~~~~~~~~~l 104 (567)
. .+.+...+ ++ ..+||+||||||++.++..+.....+++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~L 289 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEE
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEe
Confidence 0 11122111 11 1479999999999998865443334555
Q ss_pred C------CCCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHHHHhccC--CHHHHHHHHHHHhhcCchhHHH
Q 008394 105 E------ALEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLGCFLYKM--EKEVWDSAINKLQRIHHPSILQ 176 (567)
Q Consensus 105 ~------~L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~--~~~~w~~~~~~l~~~~~~~l~~ 176 (567)
+ +|+++||++||.+..... ..++..+ .|+|+||||+.+|+.|+++ +.+.|... ....+..
T Consensus 290 eL~d~dL~LS~eEA~eLF~~~~g~~--~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~a 357 (1221)
T 1vt4_I 290 SLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTT 357 (1221)
T ss_dssp EECSSSSCCCHHHHHHHHHHHHCCC--TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHH
T ss_pred cCccccCCcCHHHHHHHHHHHcCCC--HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHH
Confidence 5 899999999999985432 2223443 4999999999999999987 78888753 3578999
Q ss_pred HHHHHHhcCCHHH-HHHHHhhcccCCCCCh--hHHHHHhhhcCC-CchhhhHHHhhcCCeEEec-CCcEEehHHHHHHH
Q 008394 177 ILKISYDGLDDKE-KNIFLDVACFFQGEDV--NPVMKFLNASGF-YPEIGISVLVDKSLIVISN-NNKITMHDWLQELG 250 (567)
Q Consensus 177 ~l~~s~~~L~~~~-k~~~~~~~~fp~~~~~--~~l~~~w~~~~~-~~~~~l~~L~~~~lv~~~~-~~~~~~H~~v~~~~ 250 (567)
++..||+.||++. |.||++||+||+++++ +.+..+|++++. .....+++|+++||++..+ ...|+|||++++++
T Consensus 358 aLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999999 9999999999998877 468899998863 3456799999999999863 56899999998854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.5e-30 Score=276.27 Aligned_cols=253 Identities=20% Similarity=0.297 Sum_probs=197.5
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH---hccCC-ceEEEEcCccccH------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI---SSDFE-GSCFLENVREESQ------------ 64 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~------------ 64 (567)
||||++++++|.++|....++.++|+|+||||+||||||.+++++. +..|+ .++|++.......
T Consensus 126 ~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~ 205 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTR 205 (591)
T ss_dssp CCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHH
Confidence 7999999999999997655677899999999999999999999753 77895 6888763222111
Q ss_pred ----------------HHHHHHHh---h-----------------cCCCCCCceEEEEeCChhhhhccCcccEEEc---C
Q 008394 65 ----------------DQEESLIE---S-----------------LDWLTPVCRIIITTRNKQVLRNWGVRKIYEM---E 105 (567)
Q Consensus 65 ----------------~~~~~l~~---~-----------------~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~l---~ 105 (567)
...+.+.. . +.+.++|++||||||++.++..+. ...+++ +
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~ 284 (591)
T 1z6t_A 206 LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM-GPKYVVPVES 284 (591)
T ss_dssp HCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC-SCEEEEECCS
T ss_pred hccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC-CCceEeecCC
Confidence 00111111 1 023478999999999998877653 234444 5
Q ss_pred CCCHHHHHHHHHHhhccCCC-ChHHHHHHHHHcCCCchHHHHHHHHhccCCHHHHHHHHHHHhhcC-----------chh
Q 008394 106 ALEYHHALELFSRHAFKQNH-PDELSSKAVKYAQGVPLALKVLGCFLYKMEKEVWDSAINKLQRIH-----------HPS 173 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~-----------~~~ 173 (567)
+|+.+|++++|...++.... ..+.+++|+++|+|+||||..+|+.++..+ ..|..++..+.... ...
T Consensus 285 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~ 363 (591)
T 1z6t_A 285 SLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEA 363 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHH
T ss_pred CCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHH
Confidence 89999999999999875322 123789999999999999999999998764 36888888776432 247
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCCCCh--hHHHHHhhhcCCCchhhhHHHhhcCCeEEecC---CcEEehHHHHH
Q 008394 174 ILQILKISYDGLDDKEKNIFLDVACFFQGEDV--NPVMKFLNASGFYPEIGISVLVDKSLIVISNN---NKITMHDWLQE 248 (567)
Q Consensus 174 l~~~l~~s~~~L~~~~k~~~~~~~~fp~~~~~--~~l~~~w~~~~~~~~~~l~~L~~~~lv~~~~~---~~~~~H~~v~~ 248 (567)
+..++..||+.||+..|.||.++|+||+++++ +.+..+|.++.......+++|+++||+....+ ..|+||+++|+
T Consensus 364 l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 364 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443 (591)
T ss_dssp HHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHH
Confidence 89999999999999999999999999998766 56788898765556777999999999986542 37999999999
Q ss_pred HHHHHhh
Q 008394 249 LGRDIVS 255 (567)
Q Consensus 249 ~~~~~~~ 255 (567)
++++...
T Consensus 444 ~~~~~~~ 450 (591)
T 1z6t_A 444 FLTEKNC 450 (591)
T ss_dssp HHHHHTG
T ss_pred HHHhhhh
Confidence 9998843
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=9.3e-24 Score=209.91 Aligned_cols=228 Identities=24% Similarity=0.327 Sum_probs=189.6
Q ss_pred cCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCccccc
Q 008394 312 SRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQL 390 (567)
Q Consensus 312 ~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l 390 (567)
...+++.|++.+|... .+|. .+..+ ++|++|++++|.+..+|..+. +++|++|++++|.+..+
T Consensus 79 ~~~~l~~L~L~~n~l~-----~lp~------~l~~l-----~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 142 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-----QFPD------QAFRL-----SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL 142 (328)
T ss_dssp TSTTCCEEEEESSCCS-----SCCS------CGGGG-----TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC
T ss_pred cccceeEEEccCCCch-----hcCh------hhhhC-----CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC
Confidence 5578999999998643 2344 33334 599999999999999998664 89999999999999999
Q ss_pred chhhhhhccCCcEEecccCccccccCCCCCCC---------CCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCC
Q 008394 391 WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLI---------PHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCP 461 (567)
Q Consensus 391 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~ 461 (567)
|..+. ++++|++|++++|.... .. +..+ ..+++|++|++++|. +..+|..+..+++|++|++++|.
T Consensus 143 p~~l~-~l~~L~~L~L~~n~~~~-~~--p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 143 PASIA-SLNRLRELSIRACPELT-EL--PEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp CGGGG-GCTTCCEEEEEEETTCC-CC--CSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC
T ss_pred cHHHh-cCcCCCEEECCCCCCcc-cc--ChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC
Confidence 88877 99999999999987654 32 2333 349999999999998 45899889999999999999987
Q ss_pred CCCcCCcccc--CCCceeeccCccCc-ccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcc
Q 008394 462 KLKRLPEISS--SNTSCLFLSGTAIE-ELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPEC 538 (567)
Q Consensus 462 ~~~~~~~~~~--~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~ 538 (567)
.. .+|.... .+|++|++++|.+. .+|..++.+++|++|++++|...+.+|..+.++++|+.|++++|+..+.+|..
T Consensus 218 l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 65 4554433 39999999998766 67888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeccccccccccchh
Q 008394 539 LGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 539 l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
++.+++|+.+++..+.+..++..
T Consensus 297 l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp GGGSCTTCEEECCGGGSCC----
T ss_pred HhhccCceEEeCCHHHHHHHhhh
Confidence 99999999999999888776654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.2e-23 Score=207.18 Aligned_cols=206 Identities=26% Similarity=0.340 Sum_probs=179.1
Q ss_pred CCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 353 TEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
.+++.|++++|.++.+|..+. +++|++|++++|.+..+|..+. ++++|++|++++|... ..+..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNPLR----ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCCCC----CCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCccc----cCcHHHhcCcCCCEE
Confidence 589999999999999988664 8999999999999998888776 8999999999999753 235568899999999
Q ss_pred ecCCCccCCccCCcccC---------CCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCCCcEE
Q 008394 432 NLRGSKSLKSLPAGIFN---------LEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYL 500 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~---------l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L 500 (567)
++++|+..+.+|..+.. +++|++|++++|... .+|..... +|++|++++|.++.+|..+..+++|++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence 99999888999987765 999999999998655 77765543 8999999999999999999999999999
Q ss_pred ecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccc-ccccchhhhh
Q 008394 501 DLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPI-LREYQKASSK 564 (567)
Q Consensus 501 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-l~~~p~~~~~ 564 (567)
++++|...+.+|..++++++|+.|++++|+..+.+|..+..+++|+.|++++|. +..+|+...+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 999999999999999999999999999999999999999999999999999975 4667766543
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.2e-23 Score=231.16 Aligned_cols=252 Identities=20% Similarity=0.189 Sum_probs=206.3
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+....+..|.+ + ++|++|++.+|.... ..|. .+.. +++|+.|++++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~--l----~~L~~L~Ls~N~l~~----~~p~------~l~~-----l~~L~~L~L~~n 452 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSN--C----SELVSLHLSFNYLSG----TIPS------SLGS-----LSKLRDLKLWLN 452 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGG--C----TTCCEEECCSSEEES----CCCG------GGGG-----CTTCCEEECCSS
T ss_pred CCccEEECCCCccccccCHHHhc--C----CCCCEEECcCCcccC----cccH------HHhc-----CCCCCEEECCCC
Confidence 34677777777776666666777 6 888888888775322 1223 2333 459999999999
Q ss_pred CCC-CCCCCCC-CCCceEEEccCCcccc-cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCC
Q 008394 364 PLK-SMPSNIC-AEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLK 440 (567)
Q Consensus 364 ~~~-~l~~~~~-~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 440 (567)
.+. .+|..+. +++|++|++++|.+.. +|..+. ++++|++|++++|+... ..|..+..+++|++|++++|.+.+
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTG---EIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCC---cCChHHhcCCCCCEEECCCCcccC
Confidence 988 5666554 7899999999999995 454444 99999999999998642 345678899999999999999888
Q ss_pred ccCCcccCCCCCcEEEcCCCCCCCcCCcccc-------------------------------------------------
Q 008394 441 SLPAGIFNLEFLTTLDLSGCPKLKRLPEISS------------------------------------------------- 471 (567)
Q Consensus 441 ~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~------------------------------------------------- 471 (567)
.+|..+..+++|++|++++|+..+.+|....
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 9999999999999999999976655553211
Q ss_pred -----------------------CCCceeeccCccCc-ccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEecc
Q 008394 472 -----------------------SNTSCLFLSGTAIE-ELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLS 527 (567)
Q Consensus 472 -----------------------~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 527 (567)
.+|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..++++++|+.|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 26889999999998 789999999999999999999999999999999999999999
Q ss_pred CCCCCcccCcccCCCCCcceeccccccccc-cch
Q 008394 528 GCSNLQRLPECLGQLSSLGTLLLEKPILRE-YQK 560 (567)
Q Consensus 528 ~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~p~ 560 (567)
+|++.+.+|..++.+++|+.|++++|.+++ +|+
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999999999999999999865 444
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.5e-23 Score=216.44 Aligned_cols=256 Identities=19% Similarity=0.160 Sum_probs=168.5
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.+ + ++|++|++.+|.+.... +. . +..+++|++|++++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~--l----~~L~~L~L~~n~i~~~~----~~------~-----~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS--F----PHLEELELNENIVSAVE----PG------A-----FNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT--C----TTCCEEECTTSCCCEEC----TT------T-----TTTCTTCCEEECCSS
T ss_pred CCCcEEECCCCccceECHhHccC--C----CCCCEEECCCCccCEeC----hh------h-----hhCCccCCEEECCCC
Confidence 34567777777777777777777 6 77888877776432221 11 1 122336666666666
Q ss_pred CCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCc---------------
Q 008394 364 PLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLN--------------- 426 (567)
Q Consensus 364 ~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~--------------- 426 (567)
.++.+|... .+++|++|++++|.+..+++..+.++++|++|++++|.... ..+..+..++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY---ISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE---ECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce---eChhhccCCCCCCEEECCCCcCccc
Confidence 666555432 35566666666666655544444455566666665554321 1122334444
Q ss_pred ---------CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccCh-hhhcc
Q 008394 427 ---------KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPS-SIELL 494 (567)
Q Consensus 427 ---------~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~-~~~~l 494 (567)
+|+.|++++|.+....+..+..+++|++|++++|+....+|..... +|++|++++|.++.+|. .+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 4444444444433333345666677777777776666655554433 88899999999988884 58889
Q ss_pred CCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 495 LRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 495 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
++|++|++++|.+....+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.++.+|+..+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 999999999988776666678889999999999988887778888889999999999999988887664
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.6e-23 Score=204.45 Aligned_cols=249 Identities=18% Similarity=0.153 Sum_probs=202.8
Q ss_pred ceEEEEEeecCcccc--cChhhhhcccccccCCCeeEEEEee-CCCCCccccccccccccccCccccCCCCCCCeeEEee
Q 008394 284 NLLWVITLEYSSIYK--LDMDIFINSRIDESRINSRVTMIRK-NNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHW 360 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l 360 (567)
..+..+.++.+.+.. ..+..|.+ + ++|++|++.+ |.... .+|. .+.. +++|++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~--l----~~L~~L~L~~~n~l~~----~~p~------~l~~-----l~~L~~L~L 108 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN--L----PYLNFLYIGGINNLVG----PIPP------AIAK-----LTQLHYLYI 108 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG--C----TTCSEEEEEEETTEES----CCCG------GGGG-----CTTCSEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhC--C----CCCCeeeCCCCCcccc----cCCh------hHhc-----CCCCCEEEC
Confidence 578899999998886 45667777 7 9999999984 64221 2333 3333 459999999
Q ss_pred CCCCCC-CCCCCC-CCCCceEEEccCCccc-ccchhhhhhccCCcEEecccCccccccCCCCCCCCCCc-CCcEEecCCC
Q 008394 361 HGYPLK-SMPSNI-CAEQLVFLEVPNSSIE-QLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLN-KLVILNLRGS 436 (567)
Q Consensus 361 ~~~~~~-~l~~~~-~~~~L~~L~l~~n~i~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 436 (567)
++|.+. .+|..+ .+++|++|++++|.+. .+|..+. .+++|++|++++|+... ..+..+..++ +|++|++++|
T Consensus 109 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~---~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISG---AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEE---ECCGGGGCCCTTCCEEECCSS
T ss_pred cCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccC---cCCHHHhhhhhcCcEEECcCC
Confidence 999987 667655 4899999999999999 4565555 89999999999997642 2345677787 9999999999
Q ss_pred ccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCCCccCccCccc
Q 008394 437 KSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSS 514 (567)
Q Consensus 437 ~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 514 (567)
.+.+.+|..+..+. |++|++++|......|..... +|++|++++|.++..+..+..+++|++|++++|.+.+.+|..
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 98778898888887 999999998776666665543 999999999999876666888999999999999988899999
Q ss_pred ccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccc-ccccc
Q 008394 515 LCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPI-LREYQ 559 (567)
Q Consensus 515 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-l~~~p 559 (567)
+..+++|+.|++++|.+.+.+|.. +.+++|+.|++++|. +...|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999999999998888886 889999999999996 66544
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.4e-22 Score=209.69 Aligned_cols=258 Identities=18% Similarity=0.161 Sum_probs=144.2
Q ss_pred cceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCC
Q 008394 283 SNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHG 362 (567)
Q Consensus 283 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~ 362 (567)
+..++.+.++.+.+..+.+..|.+ + ++|++|++.+|....... +. . +..+++|++|++++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~--l----~~L~~L~L~~n~~~~~i~---~~------~-----~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSR--L----QDLQFLKVEQQTPGLVIR---NN------T-----FRGLSSLIILKLDY 88 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSS--C----TTCCEEECCCCSTTCEEC---TT------T-----TTTCTTCCEEECTT
T ss_pred CCccCEEEecCCccCcCChhHhcc--C----ccccEEECcCCcccceEC---cc------c-----ccccccCCEEeCCC
Confidence 356788889999888888888888 7 899999998875321110 11 1 12234666666666
Q ss_pred CCCCCC-CCCC-CCCCceEEEccCCccccc--chhhhhhccCCcEEecccCccccccCCCCCC-CCCCcCCcEEecCCCc
Q 008394 363 YPLKSM-PSNI-CAEQLVFLEVPNSSIEQL--WDGMKQHRGKLNQIIHATCKMLIAKTPNPTL-IPHLNKLVILNLRGSK 437 (567)
Q Consensus 363 ~~~~~l-~~~~-~~~~L~~L~l~~n~i~~l--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 437 (567)
|.+..+ |..+ .+++|++|++++|.+... ....+.++++|++|++++|.... . .+.. +..+++|++|++++|.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--I-QPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS--C-CCCGGGGGCTTCCEEECTTCC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc--c-CcccccCCCCcccEEeCCCCc
Confidence 665544 2222 255566666666655541 11223355556666665554321 1 1111 4455555555555555
Q ss_pred cCCccCCcccC----------------------------------CCCCcEEEcCCCC----------------------
Q 008394 438 SLKSLPAGIFN----------------------------------LEFLTTLDLSGCP---------------------- 461 (567)
Q Consensus 438 ~~~~~p~~l~~----------------------------------l~~L~~L~Ls~~~---------------------- 461 (567)
+.+..|..+.. +++|++|++++|.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 43333332222 1334444444442
Q ss_pred -----------------------------------------CCCcCCcccc--CCCceeeccCccCccc-ChhhhccCCC
Q 008394 462 -----------------------------------------KLKRLPEISS--SNTSCLFLSGTAIEEL-PSSIELLLRL 497 (567)
Q Consensus 462 -----------------------------------------~~~~~~~~~~--~~L~~L~l~~~~i~~l-p~~~~~l~~L 497 (567)
.....|.... .+|++|++++|.++.+ |..+..+++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 2222222222 2666666666666655 3456666667
Q ss_pred cEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 498 EYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 498 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++++|+..+
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 777776666555555666666777777777766665556666667777777777777766666443
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.7e-21 Score=194.19 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=200.7
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+....|.+ + ++|++|++.+|..... .+. .+ ..+++|++|++++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~--l----~~L~~L~L~~n~l~~~----~~~------~~-----~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKN--L----KNLHTLILINNKISKI----SPG------AF-----APLVKLERLYLSKN 110 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTT--C----TTCCEEECCSSCCCCB----CTT------TT-----TTCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhcc--C----CCCCEEECCCCcCCee----CHH------Hh-----cCCCCCCEEECCCC
Confidence 45678999999999988888888 8 9999999998864322 122 22 34559999999999
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccC
Q 008394 364 PLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLP 443 (567)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p 443 (567)
.++.+|.... ++|++|++++|.+..++...+.++++|++|++++|.... ....+..+..+++|++|++++|. +..+|
T Consensus 111 ~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~-l~~l~ 187 (330)
T 1xku_A 111 QLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTN-ITTIP 187 (330)
T ss_dssp CCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSC-CCSCC
T ss_pred cCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCc-cccCC
Confidence 9999987765 899999999999999988877799999999999997632 11234567889999999999998 56677
Q ss_pred CcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCC
Q 008394 444 AGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKS 520 (567)
Q Consensus 444 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 520 (567)
..+. ++|++|++++|......|.... .+|++|++++|.++.++. .+..+++|++|++++|++. .+|..+..+++
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 6554 8999999999876655454444 389999999999998765 6899999999999999855 78888999999
Q ss_pred CcEEeccCCCCCcccCcccCC------CCCcceeccccccccc--cchhhh
Q 008394 521 LEILDLSGCSNLQRLPECLGQ------LSSLGTLLLEKPILRE--YQKASS 563 (567)
Q Consensus 521 L~~L~l~~~~~~~~~p~~l~~------l~~L~~L~l~~~~l~~--~p~~~~ 563 (567)
|+.|++++|.+...-+..+.. .+.|+.|++++|.+.. +++..+
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 999999998876554444532 4788999999998864 444443
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.7e-21 Score=194.32 Aligned_cols=252 Identities=20% Similarity=0.142 Sum_probs=196.3
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.+ + ++|++|++.+|..... .+. .+ ..+++|++|++++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~--l----~~L~~L~L~~n~l~~~----~~~------~~-----~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKG--L----QHLYALVLVNNKISKI----HEK------AF-----SPLRKLQKLYISKN 112 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTT--C----TTCCEEECCSSCCCEE----CGG------GS-----TTCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhC--C----CCCcEEECCCCccCcc----CHh------Hh-----hCcCCCCEEECCCC
Confidence 45678999999998888888888 8 9999999998864322 112 22 34569999999999
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccC
Q 008394 364 PLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLP 443 (567)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p 443 (567)
.++.+|.... ++|++|++++|.+..++...+.++++|++|++++|.... ....+..+..+ +|++|++++|. +..+|
T Consensus 113 ~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l-~L~~L~l~~n~-l~~l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-KLNYLRISEAK-LTGIP 188 (332)
T ss_dssp CCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSC-CCSCCBCCSSB-CSSCC
T ss_pred cCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCC-ccCEEECcCCC-CCccC
Confidence 9999988766 899999999999999998877789999999999997632 11234556666 89999999988 55577
Q ss_pred CcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCC
Q 008394 444 AGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKS 520 (567)
Q Consensus 444 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 520 (567)
..+. ++|++|++++|......+.... .+|++|++++|.++.++. .+..+++|++|++++|++. .+|..+..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 6554 7899999999876555444443 389999999999987765 6888999999999998755 78888899999
Q ss_pred CcEEeccCCCCCcccCcccCC------CCCcceecccccccc--ccchhhh
Q 008394 521 LEILDLSGCSNLQRLPECLGQ------LSSLGTLLLEKPILR--EYQKASS 563 (567)
Q Consensus 521 L~~L~l~~~~~~~~~p~~l~~------l~~L~~L~l~~~~l~--~~p~~~~ 563 (567)
|+.|++++|.+....+..+.. .++|+.|++++|.+. .+++..+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 999999998876554454543 467889999999876 5565554
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.4e-22 Score=200.10 Aligned_cols=230 Identities=18% Similarity=0.159 Sum_probs=190.6
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCC-CCCC-CCCCCC-CCCCceEEEccCCccc-c
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHG-YPLK-SMPSNI-CAEQLVFLEVPNSSIE-Q 389 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~-~~~~L~~L~l~~n~i~-~ 389 (567)
.+++.|++.+|...+. ..+|. .+..+ ++|++|++++ |.+. .+|..+ .+++|++|++++|.+. .
T Consensus 50 ~~l~~L~L~~~~l~~~--~~~~~------~l~~l-----~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP--YPIPS------SLANL-----PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSC--EECCG------GGGGC-----TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCCccCC--cccCh------hHhCC-----CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 5699999999875431 02333 33444 5999999995 7766 567655 4899999999999998 5
Q ss_pred cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCC-CCcEEEcCCCCCCCcCCc
Q 008394 390 LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLE-FLTTLDLSGCPKLKRLPE 468 (567)
Q Consensus 390 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~Ls~~~~~~~~~~ 468 (567)
+|..+. ++++|++|++++|.... ..+..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|...+..|.
T Consensus 117 ~p~~~~-~l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 117 IPDFLS-QIKTLVTLDFSYNALSG---TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CCGGGG-GCTTCCEEECCSSEEES---CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCHHHh-CCCCCCEEeCCCCccCC---cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 666565 99999999999998642 3456788999999999999997779999999998 999999999987767776
Q ss_pred cccC-CCceeeccCccCcc-cChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcc
Q 008394 469 ISSS-NTSCLFLSGTAIEE-LPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLG 546 (567)
Q Consensus 469 ~~~~-~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 546 (567)
.... .|++|++++|.++. .|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 193 ~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp GGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred HHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 5553 79999999999984 566799999999999999998776666 88999999999999999889999999999999
Q ss_pred eecccccccc-ccchh
Q 008394 547 TLLLEKPILR-EYQKA 561 (567)
Q Consensus 547 ~L~l~~~~l~-~~p~~ 561 (567)
.|++++|.++ .+|+.
T Consensus 272 ~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCSSEEEEECCCS
T ss_pred EEECcCCcccccCCCC
Confidence 9999999997 55553
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=4.5e-22 Score=196.11 Aligned_cols=227 Identities=18% Similarity=0.177 Sum_probs=173.8
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCC---C-CCCCCCceEEEccCCcccc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMP---S-NICAEQLVFLEVPNSSIEQ 389 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~---~-~~~~~~L~~L~l~~n~i~~ 389 (567)
+++++|++.+|.... ++. . .+..+++|++|++++|.+..+. . ...+++|++|++++|.+..
T Consensus 28 ~~l~~L~L~~n~l~~-----i~~------~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 28 SSATRLELESNKLQS-----LPH------G----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp TTCCEEECCSSCCCC-----CCT------T----TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE
T ss_pred CCCCEEECCCCccCc-----cCH------h----HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc
Confidence 458888888774321 111 0 0234568889999888877552 2 2247889999999999888
Q ss_pred cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCC-cCCc
Q 008394 390 LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLK-RLPE 468 (567)
Q Consensus 390 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~-~~~~ 468 (567)
++..+. .+++|++|++++|... ..+....+..+++|++|++++|.+.+..|..+..+++|++|++++|.... ..|.
T Consensus 93 l~~~~~-~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 93 MSSNFL-GLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEE-TCTTCCEEECTTSEEE--SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ChhhcC-CCCCCCEEECCCCccc--ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 887766 8899999999988754 23333567888999999999988666677778889999999999886554 3455
Q ss_pred ccc--CCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCC-C
Q 008394 469 ISS--SNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLS-S 544 (567)
Q Consensus 469 ~~~--~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~ 544 (567)
... .+|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..++ +
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 444 3899999999999877 56788899999999999887766666788899999999999988888888888885 8
Q ss_pred cceecccccccccc
Q 008394 545 LGTLLLEKPILREY 558 (567)
Q Consensus 545 L~~L~l~~~~l~~~ 558 (567)
|+.|++++|.+...
T Consensus 250 L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 250 LAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTCCEECS
T ss_pred CCEEEccCCCeecc
Confidence 99999999988654
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.8e-21 Score=198.70 Aligned_cols=250 Identities=14% Similarity=0.077 Sum_probs=164.3
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..++...|.. + ++|++|++.+|.+..... . . +..+++|++|++++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~--l----~~L~~L~L~~n~i~~~~~----~------~-----~~~l~~L~~L~L~~n 103 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDS--F----RQVELLNLNDLQIEEIDT----Y------A-----FAYAHTIQKLYMGFN 103 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHH--C----CCCSEEECTTSCCCEECT----T------T-----TTTCTTCCEEECCSS
T ss_pred CCceEEEecCCchhhCChhHhcc--c----ccCcEEECCCCcccccCh----h------h-----ccCCCCcCEEECCCC
Confidence 45677888888888888888888 8 899999998875332211 1 1 234458888888888
Q ss_pred CCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCc
Q 008394 364 PLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKS 441 (567)
Q Consensus 364 ~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 441 (567)
.+..++... .+++|++|++++|.+..++..++.++++|++|++++|.... ..+..+..+++|++|++++|.+..
T Consensus 104 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~- 179 (390)
T 3o6n_A 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRLTH- 179 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTSSCTTCCEEECCSSCCSB-
T ss_pred CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc---cChhhccCCCCCCEEECCCCcCCc-
Confidence 888876543 47888888888888888888876688888888888886532 234457788888888888887433
Q ss_pred cCCcccCCCCCcEEEcCCCCC------------------CCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecC
Q 008394 442 LPAGIFNLEFLTTLDLSGCPK------------------LKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLS 503 (567)
Q Consensus 442 ~p~~l~~l~~L~~L~Ls~~~~------------------~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 503 (567)
++ +..+++|++|++++|.. +..+|.....+|+.|++++|.++.. ..+..+++|++|+++
T Consensus 180 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 180 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLS 256 (390)
T ss_dssp CC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred cc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECC
Confidence 32 33344444444444321 1222333334666666666666654 356666777777777
Q ss_pred CCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 504 DCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
+|.+.+..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|+..
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 314 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGH
T ss_pred CCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccc
Confidence 76666555666666677777777665543 34444556666666666666666666543
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=201.39 Aligned_cols=216 Identities=21% Similarity=0.160 Sum_probs=139.5
Q ss_pred ccccCCCCCCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCC
Q 008394 344 VSYLEDPRFTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTL 421 (567)
Q Consensus 344 l~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 421 (567)
+..+|..-.++++.|++++|.++.++... .+++|++|++++|.+..++...+.++++|++|+|++|+... ..+..
T Consensus 55 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~ 131 (440)
T 3zyj_A 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT---IPNGA 131 (440)
T ss_dssp CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS---CCTTT
T ss_pred cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe---eCHhH
Confidence 33444333356777777777777665322 36777777777777777766666577777777777775421 22334
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc---CCCceeeccCccCcccChhhhccCCCc
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS---SNTSCLFLSGTAIEELPSSIELLLRLE 498 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~---~~L~~L~l~~~~i~~lp~~~~~l~~L~ 498 (567)
+..+++|++|++++|.+....+..+..+++|++|++++|+.+..++.... .+|++|++++|.++.+| .+..+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccC
Confidence 66677777777777764333334566677777777777666665554322 26777777777777666 366677777
Q ss_pred EEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 499 YLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 499 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
+|++++|.+.+..|..|.++++|+.|++++|.+....+..+..+++|+.|+|++|.++.+|+..+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 77777776666556667777777777777766666556666677777777777777777666543
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=2.8e-21 Score=188.32 Aligned_cols=213 Identities=19% Similarity=0.143 Sum_probs=178.0
Q ss_pred CccccCCCCCCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCC
Q 008394 343 KVSYLEDPRFTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPT 420 (567)
Q Consensus 343 ~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 420 (567)
++..+|..-.++|+.|++++|.++.++... .+++|++|++++|.+..+....+.++++|++|++++|..+. ...+.
T Consensus 22 ~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~--~~~~~ 99 (285)
T 1ozn_A 22 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR--SVDPA 99 (285)
T ss_dssp CCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC--CCCTT
T ss_pred CcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc--ccCHH
Confidence 344444444479999999999999888543 47999999999999999866666699999999999997432 23356
Q ss_pred CCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCC
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRL 497 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L 497 (567)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|......+.... .+|++|++++|.++.+|.. +..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 788999999999999997666678888999999999999876544443332 4999999999999998864 8999999
Q ss_pred cEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccc
Q 008394 498 EYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 498 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999999888889899999999999999998877555678999999999999998864
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=3.7e-22 Score=216.39 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=128.0
Q ss_pred ceEEEEEeecCcccccCh-hhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCC
Q 008394 284 NLLWVITLEYSSIYKLDM-DIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHG 362 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~ 362 (567)
..++.+.++.+.+..++. ..|.+ + ++|+.|++++|...+. +| . +..+++|++|++++
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~--l----~~L~~L~L~~N~l~g~----ip-~-----------~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQK--M----KKLGMLECLYNQLEGK----LP-A-----------FGSEIKLASLNLAY 362 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTT--C----TTCCEEECCSCCCEEE----CC-C-----------CEEEEEESEEECCS
T ss_pred CCCCEEECCCCcCCccCchhhhcc--C----CCCCEEeCcCCcCccc----hh-h-----------hCCCCCCCEEECCC
Confidence 456777788777775553 36666 6 7888888877753311 11 1 11223555555555
Q ss_pred CCCCCCCCCCC-CCC-ceEEEccCCcccccchhhhhh--ccCCcEEecccCccccccCCCCCCCC-------CCcCCcEE
Q 008394 363 YPLKSMPSNIC-AEQ-LVFLEVPNSSIEQLWDGMKQH--RGKLNQIIHATCKMLIAKTPNPTLIP-------HLNKLVIL 431 (567)
Q Consensus 363 ~~~~~l~~~~~-~~~-L~~L~l~~n~i~~l~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L 431 (567)
|.+..+|..+. +++ |++|++++|.+..+|..+. . +++|++|++++|.... ..+..+. .+++|++|
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~-~~~l~~L~~L~Ls~N~l~~---~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGS---VDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC-TTCSSCEEEEECCSSCTTT---TTTCSSCTTCSSCCCCCCEEEE
T ss_pred CccccccHhhhhhcccCcEEEccCCcCcccchhhh-hcccCccCEEECcCCcCCC---cchhhhcccccccccCCCCCEE
Confidence 55555554432 444 5555555555555554332 2 2255555555554321 1122222 44455555
Q ss_pred ecCCCccCCccCCccc-CCCCCcEEEcCCCCCCCcCCccccC----------CCceeeccCccCcccChhhh--ccCCCc
Q 008394 432 NLRGSKSLKSLPAGIF-NLEFLTTLDLSGCPKLKRLPEISSS----------NTSCLFLSGTAIEELPSSIE--LLLRLE 498 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~----------~L~~L~l~~~~i~~lp~~~~--~l~~L~ 498 (567)
++++|.+ ..+|..+. .+++|++|++++|... .+|..... +|++|++++|.++.+|..+. .+++|+
T Consensus 439 ~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 439 NLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516 (636)
T ss_dssp ECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred ECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence 5555552 24443322 3555555555554433 44433221 45555555555555555554 555555
Q ss_pred EEecCCCccCccCcccccCCCCCcEEec------cCCCCCcccCcccCCCCCcceeccccccccccchh
Q 008394 499 YLDLSDCKRLKSLPSSLCKLKSLEILDL------SGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 499 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l------~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
+|++++|++.+ +|..+.++++|+.|++ ++|...+.+|..++.+++|+.|++++|.++.+|..
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 55555555444 5555555555555555 23444455555555555555555555555555543
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.2e-21 Score=193.28 Aligned_cols=245 Identities=14% Similarity=0.145 Sum_probs=194.3
Q ss_pred EEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCC
Q 008394 287 WVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLK 366 (567)
Q Consensus 287 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 366 (567)
+.+.++...+..++.... +++++|++++|.+..... . . +..+++|++|++++|.++
T Consensus 34 ~~l~~~~~~l~~lp~~~~---------~~l~~L~L~~n~i~~~~~----~------~-----~~~l~~L~~L~L~~n~l~ 89 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLP---------PDTALLDLQNNKITEIKD----G------D-----FKNLKNLHTLILINNKIS 89 (330)
T ss_dssp TEEECTTSCCCSCCCSCC---------TTCCEEECCSSCCCCBCT----T------T-----TTTCTTCCEEECCSSCCC
T ss_pred eEEEecCCCccccCccCC---------CCCeEEECCCCcCCEeCh----h------h-----hccCCCCCEEECCCCcCC
Confidence 344555555555543322 568999998875432211 0 1 234569999999999998
Q ss_pred CC-CCCC-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCC--cc
Q 008394 367 SM-PSNI-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLK--SL 442 (567)
Q Consensus 367 ~l-~~~~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~ 442 (567)
.+ |..+ .+++|++|++++|.+..++..+. ++|++|++++|.... ..+..+..+++|++|++++|.+.. ..
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccc---cCHhHhcCCccccEEECCCCcCCccCcC
Confidence 87 4444 47899999999999999887665 789999999997532 122346789999999999998542 56
Q ss_pred CCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCcccccCCCCC
Q 008394 443 PAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSL 521 (567)
Q Consensus 443 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 521 (567)
+..+..+++|++|++++|. +..+|.....+|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 6778899999999999976 4457777778999999999999977 5679999999999999999877777789999999
Q ss_pred cEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 522 EILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 522 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
+.|++++|.+. .+|..+..+++|+.|++++|.++.+|...+
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 99999998766 788889999999999999999999987665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.4e-21 Score=215.90 Aligned_cols=249 Identities=13% Similarity=0.133 Sum_probs=146.6
Q ss_pred eEEEEEeecCcccccCh-hhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccC-CCCCCCeeEEeeCC
Q 008394 285 LLWVITLEYSSIYKLDM-DIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLE-DPRFTEVKYLHWHG 362 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~L~~L~l~~ 362 (567)
.++.+.++.+.+..++. ..|.+ + ++|+.|++++|.+. .+| +..+++|+.|++++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~--L----~~L~~L~Ls~N~l~------------------~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQK--M----VKLGLLDCVHNKVR------------------HLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTT--C----TTCCEEECTTSCCC------------------BCCCCCTTSEESEEECCS
T ss_pred CccEEEeeCCcCCccCChhhhhc--C----CCCCEEECCCCCcc------------------cchhhcCCCcceEEECcC
Confidence 44555555555554432 24444 4 55666655555321 121 23445777777777
Q ss_pred CCCCCCCCCCC-CCC-ceEEEccCCcccccchhhhhhc--cCCcEEecccCccccccCCC-CCCCC--CCcCCcEEecCC
Q 008394 363 YPLKSMPSNIC-AEQ-LVFLEVPNSSIEQLWDGMKQHR--GKLNQIIHATCKMLIAKTPN-PTLIP--HLNKLVILNLRG 435 (567)
Q Consensus 363 ~~~~~l~~~~~-~~~-L~~L~l~~n~i~~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~-~~~~~--~l~~L~~L~l~~ 435 (567)
|.+..+|..+. +++ |+.|++++|.+..+|..+. .+ ++|+.|++++|.... ..+. +..+. .+++|++|++++
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~-~~~~~~L~~L~Ls~N~l~g-~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCC-TTCSSCEEEEECCSSCTTT-TSSSCSSCTTTCCCCCEEEEECCS
T ss_pred CccccchHHHhhccccCCEEECcCCCCCcCchhhh-ccccCCCCEEECcCCcCCC-ccccchhhhccccCCCcCEEEccC
Confidence 77776665554 555 7777777777776665443 33 337777777765432 1111 01111 234666777766
Q ss_pred CccCCccCCccc-CCCCCcEEEcCCCCCCCcCCccccC----------CCceeeccCccCcccChhhh--ccCCCcEEec
Q 008394 436 SKSLKSLPAGIF-NLEFLTTLDLSGCPKLKRLPEISSS----------NTSCLFLSGTAIEELPSSIE--LLLRLEYLDL 502 (567)
Q Consensus 436 ~~~~~~~p~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~----------~L~~L~l~~~~i~~lp~~~~--~l~~L~~L~l 502 (567)
|. +..+|..+. .+++|+.|+|++|... .+|..... +|++|+|++|.++.+|..+. .+++|+.|++
T Consensus 683 N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 683 NE-IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp SC-CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEEC
T ss_pred Cc-CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEe
Confidence 66 335555443 5677777777776443 55543332 57777777777777776665 6777777777
Q ss_pred CCCccCccCcccccCCCCCcEEeccC------CCCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 503 SDCKRLKSLPSSLCKLKSLEILDLSG------CSNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 503 ~~~~~~~~~p~~~~~l~~L~~L~l~~------~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
++|++.+ +|..+.++++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+..+|+..
T Consensus 761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp CSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred CCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh
Confidence 7766554 666666777777777754 5555666666777777777777777776666643
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=2.2e-21 Score=201.99 Aligned_cols=199 Identities=18% Similarity=0.145 Sum_probs=91.6
Q ss_pred CCeeEEeeCCCCCCCCCCC-C-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 353 TEVKYLHWHGYPLKSMPSN-I-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
++|++|++++|.+..++.. + .+++|++|++++|.+..++...+..+++|++|++++|.... .....+..+++|++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES---IPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE---ECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce---eCHhHHhcCCcccE
Confidence 3455555555544444321 1 24455555555555555444444345555555555544321 11223444555555
Q ss_pred EecCCCccCCccCC-cccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCccc-ChhhhccCCCcEEecCCCcc
Q 008394 431 LNLRGSKSLKSLPA-GIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKR 507 (567)
Q Consensus 431 L~l~~~~~~~~~p~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~ 507 (567)
|++++|+.++.+|. .+..+++|++|++++|... .+|.... .+|++|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 55554444444432 2444555555555554322 2232222 2555555555555544 23355555555555555554
Q ss_pred CccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccc
Q 008394 508 LKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPIL 555 (567)
Q Consensus 508 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 555 (567)
....|..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 444444455555555555555544433333344455555555555543
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2.8e-21 Score=209.09 Aligned_cols=264 Identities=18% Similarity=0.149 Sum_probs=187.6
Q ss_pred eEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccC----------cccc---CCCC
Q 008394 285 LLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCK----------VSYL---EDPR 351 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~----------l~~~---~~~~ 351 (567)
.++.+.++.+.+..+.+..|.+ + ++|+.|++.+|... .+|..+.++.. +..+ ....
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~--l----~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHC--F----SGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTT--C----TTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred ceeEEEeecCccCccCHHHhcc--c----cCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 6888999999998888888888 8 99999999888643 23332222111 1111 1234
Q ss_pred CCCeeEEeeCCCCCC-CCCCC-C-CCCCceEEEccCCcccccc--hhhhhhccCCcEEecccCccccccCCCCCCCCCCc
Q 008394 352 FTEVKYLHWHGYPLK-SMPSN-I-CAEQLVFLEVPNSSIEQLW--DGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLN 426 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~-~l~~~-~-~~~~L~~L~l~~n~i~~l~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 426 (567)
+++|++|++++|.+. .+|.. + .+++|++|++++|.+.... ...+.++++|++|++++|.... ..+..+..++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~ 400 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEAFKECP 400 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE---ECTTTTTTCT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc---CCHHHhcCCc
Confidence 556677777666654 34432 2 3677777788777777654 3333377788888888776432 2244567778
Q ss_pred CCcEEecCCCccCCccCCc-ccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcc--cC--hhhhccCCCcE
Q 008394 427 KLVILNLRGSKSLKSLPAG-IFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEE--LP--SSIELLLRLEY 499 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~--lp--~~~~~l~~L~~ 499 (567)
+|++|++++|.+.+..|.. +..+++|++|++++|......|.... .+|++|++++|.++. +| ..+..+++|++
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 8888888888765555543 77788888888888776665555443 388888888888874 23 45888888888
Q ss_pred EecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 500 LDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 500 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
|++++|.+.+..|..++++++|+.|++++|.+.+..|..+..+++| .|++++|.++.+|+..+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence 8888888777777888888899999999888888888888888888 89999998888877654
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4e-21 Score=207.05 Aligned_cols=250 Identities=14% Similarity=0.075 Sum_probs=163.5
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.+..+.+..+++..|.+ + ++|++|++.+|.+.... +. . +..+++|++|++++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~--l----~~L~~L~L~~n~l~~~~----~~------~-----~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDS--F----RQVELLNLNDLQIEEID----TY------A-----FAYAHTIQKLYMGFN 109 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHH--C----CCCSEEECTTSCCCEEC----TT------T-----TTTCTTCCEEECCSS
T ss_pred CCceEEEeeCCCCCCcCHHHHcc--C----CCCcEEECCCCCCCCCC----hH------H-----hcCCCCCCEEECCCC
Confidence 34566778888888888888888 7 88999999887543221 11 1 234458888888888
Q ss_pred CCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCc
Q 008394 364 PLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKS 441 (567)
Q Consensus 364 ~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 441 (567)
.+..++... .+++|++|++++|.+..+|..++.++++|++|++++|.... ..+..+..+++|++|++++|.+.+
T Consensus 110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~- 185 (597)
T 3oja_B 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRLTH- 185 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECTTSCCSB-
T ss_pred cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC---CChhhhhcCCcCcEEECcCCCCCC-
Confidence 888877643 47888888888888888888876688888888888886532 234457788888888888887433
Q ss_pred cCCcccCCCCCcEEEcCCCCC------------------CCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecC
Q 008394 442 LPAGIFNLEFLTTLDLSGCPK------------------LKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLS 503 (567)
Q Consensus 442 ~p~~l~~l~~L~~L~Ls~~~~------------------~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 503 (567)
++ +..+++|++|++++|.. +..++.....+|+.|++++|.++.. ..+..+++|++|+++
T Consensus 186 ~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 186 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLS 262 (597)
T ss_dssp CC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred cC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECC
Confidence 33 33444444444444322 1222223334566666666666653 456666777777777
Q ss_pred CCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 504 DCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
+|.+.+..|..++++++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|+..
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 320 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQ 320 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGH
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCccc
Confidence 776666666666677777777777655543 4555556666677777666666666543
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=4.9e-22 Score=220.41 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=170.2
Q ss_pred CCCCeeEEeeCCCCCC-CCCCCCC-CC-CceEEEccCCcccc-cchhhh-hhccCCcEEecccCccccccCCCCCCCCCC
Q 008394 351 RFTEVKYLHWHGYPLK-SMPSNIC-AE-QLVFLEVPNSSIEQ-LWDGMK-QHRGKLNQIIHATCKMLIAKTPNPTLIPHL 425 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~-~l~~~~~-~~-~L~~L~l~~n~i~~-l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 425 (567)
.+++|++|++++|.+. .+|..+. +. +|++|++++|.+.. ++.... ..+++|++|++++|.... ..+..+..+
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~l~~l 417 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG---KIPPTLSNC 417 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE---ECCGGGGGC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc---ccCHHHhcC
Confidence 3457777777777765 5555543 33 77777777777764 333333 126778888888876543 234567888
Q ss_pred cCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCc-ccChhhhccCCCcEEec
Q 008394 426 NKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIE-ELPSSIELLLRLEYLDL 502 (567)
Q Consensus 426 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l 502 (567)
++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..... +|++|++++|.++ .+|..+..+++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 99999999999988888988999999999999999888788876553 9999999999998 67888999999999999
Q ss_pred CCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccc-ccchhhhh
Q 008394 503 SDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR-EYQKASSK 564 (567)
Q Consensus 503 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~~p~~~~~ 564 (567)
++|++.+.+|.+++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.++ .+|...++
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 999998899999999999999999999999999999999999999999999887 67776653
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.4e-21 Score=193.27 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=187.5
Q ss_pred EEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCC
Q 008394 287 WVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLK 366 (567)
Q Consensus 287 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 366 (567)
+.+.++.+.+..++...+ +++++|++.+|.+.... +. . +..+++|++|++++|.++
T Consensus 36 ~~l~~~~~~l~~ip~~~~---------~~l~~L~l~~n~i~~~~----~~------~-----~~~l~~L~~L~L~~n~l~ 91 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEIS---------PDTTLLDLQNNDISELR----KD------D-----FKGLQHLYALVLVNNKIS 91 (332)
T ss_dssp TEEECCSSCCSSCCSCCC---------TTCCEEECCSSCCCEEC----TT------T-----TTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCCccccCCCCC---------CCCeEEECCCCcCCccC----Hh------H-----hhCCCCCcEEECCCCccC
Confidence 445566666665554332 45888888887532211 11 1 234558999999999888
Q ss_pred CCC-CCC-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccC--Ccc
Q 008394 367 SMP-SNI-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSL--KSL 442 (567)
Q Consensus 367 ~l~-~~~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~ 442 (567)
.++ ..+ .+++|++|++++|.+..++..+. ++|++|++++|.... ..+..+..+++|++|++++|.+. +..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRK---VPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp EECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCC---CCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred ccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCc---cCHhHhCCCccCCEEECCCCccccCCCC
Confidence 773 333 47889999999998888877665 788999999887532 22334778899999999998853 255
Q ss_pred CCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccC-hhhhccCCCcEEecCCCccCccCcccccCCCCC
Q 008394 443 PAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELP-SSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSL 521 (567)
Q Consensus 443 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 521 (567)
|..+..+ +|++|++++|.. ..+|.....+|++|++++|.++.++ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKL-TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBC-SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cccccCC-ccCEEECcCCCC-CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 6667677 899999998754 4477766679999999999999876 579999999999999999877777789999999
Q ss_pred cEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 522 EILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 522 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
+.|++++|.+. .+|..+..+++|+.|++++|.++++|...+
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 99999998766 789889999999999999999999987654
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=204.74 Aligned_cols=232 Identities=17% Similarity=0.124 Sum_probs=170.9
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCC-CCC-CCCCceEEEccCCcccccc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMP-SNI-CAEQLVFLEVPNSSIEQLW 391 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~n~i~~l~ 391 (567)
.+++.|++++|.+.... +. . +..+++|++|++++|.+..++ ..+ .+++|++|++++|.+..++
T Consensus 32 ~~l~~L~L~~n~l~~~~----~~------~-----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN----QD------E-----FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp TTCSEEECCSSCCCEEC----TT------T-----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCcEEECCCCccceEC----Hh------H-----ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 56999999988643221 11 1 334569999999999998874 444 4899999999999999999
Q ss_pred hhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc-
Q 008394 392 DGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS- 470 (567)
Q Consensus 392 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~- 470 (567)
...+.++++|++|++++|.... ..+..+..+++|++|++++|.+....|..+..+++|+.|++++|......+...
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVI---LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred cccccCCCCCCEEECCCCcccc---CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 9887799999999999998643 234568899999999999999766667789999999999999986544333222
Q ss_pred -cCCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcc------------------------cccCCCCCcEE
Q 008394 471 -SSNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPS------------------------SLCKLKSLEIL 524 (567)
Q Consensus 471 -~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~------------------------~~~~l~~L~~L 524 (567)
..+|+.|++++|.+..++. .+..+++|++|++++|...+.+|. .+.++++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 2388888888888876654 466667666666666554443332 45667777777
Q ss_pred eccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 525 DLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 525 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
++++|.+....+..+..+++|+.|++++|.++.+++..+
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 777776665555567777777777777777777655443
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.1e-21 Score=208.79 Aligned_cols=205 Identities=18% Similarity=0.140 Sum_probs=124.5
Q ss_pred CCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCccccc---chhhhhhccCCcEEecccCccccccCCCCCCCCCCcCC
Q 008394 352 FTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQL---WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKL 428 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 428 (567)
+++|+.|++++|....-.....+++|++|++++|.+... +..+. .+++|++|++++|.... . +..+..+++|
T Consensus 327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~--~--~~~~~~l~~L 401 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII--M--SANFMGLEEL 401 (606)
T ss_dssp CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE--E--CCCCTTCTTC
T ss_pred CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc--c--hhhccCCCCC
Confidence 345566666555322211222456666666666666655 33333 66777777777665432 1 2455666677
Q ss_pred cEEecCCCccCCccC-CcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcc--cChhhhccCCCcEEecC
Q 008394 429 VILNLRGSKSLKSLP-AGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEE--LPSSIELLLRLEYLDLS 503 (567)
Q Consensus 429 ~~L~l~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~ 503 (567)
++|++++|.+.+..| ..+..+++|++|++++|......|.... .+|++|++++|.++. +|..+..+++|++|+++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 777777666555444 4566667777777776665555554433 266777777666663 45666666677777776
Q ss_pred CCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchh
Q 008394 504 DCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
+|.+.+..|..+.++++|+.|++++|.+.+..|..++.+++|+.|++++|.++.+|+.
T Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 6666665566666666777777776666666666666666677777777666666654
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=5.8e-21 Score=199.13 Aligned_cols=135 Identities=21% Similarity=0.060 Sum_probs=115.9
Q ss_pred cCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCccc-ChhhhccCCCcEEec
Q 008394 426 NKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEEL-PSSIELLLRLEYLDL 502 (567)
Q Consensus 426 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l 502 (567)
++|++|++++|.+.+..|..+..+++|++|++++|......|.... .+|++|++++|.++.+ |..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 5788888888887777788899999999999999887766665544 3999999999999987 456899999999999
Q ss_pred CCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccch
Q 008394 503 SDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 503 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.-.+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999888888899999999999999998876555667899999999999999876543
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=7.9e-21 Score=197.80 Aligned_cols=222 Identities=18% Similarity=0.111 Sum_probs=111.6
Q ss_pred eEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCC
Q 008394 285 LLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYP 364 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~ 364 (567)
.++.+.++.+.+..+.+..|.+ + ++|+.|++++|.+.... +. . +..+++|++|++++|.
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~--l----~~L~~L~Ls~n~i~~~~----~~------~-----~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRH--L----HHLEVLQLGRNSIRQIE----VG------A-----FNGLASLNTLELFDNW 134 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTT--C----TTCCEEECCSSCCCEEC----TT------T-----TTTCTTCCEEECCSSC
T ss_pred CccEEECcCCcCceECHHHcCC--C----CCCCEEECCCCccCCcC----hh------h-----ccCcccCCEEECCCCc
Confidence 3455555555555555555555 5 55555555555321110 00 1 1223355555555555
Q ss_pred CCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCcc
Q 008394 365 LKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSL 442 (567)
Q Consensus 365 ~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 442 (567)
++.++... .+++|++|++++|.+..++...+.++++|++|++++|.... .. ....+..+++|++|++++|. +..+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~~~l~~L~~L~L~~n~-l~~~ 211 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YI-SEGAFEGLFNLKYLNLGMCN-IKDM 211 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-EE-CTTTTTTCTTCCEEECTTSC-CSSC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-cc-ChhhccCCCCCCEEECCCCc-cccc
Confidence 55555432 24555556665555555555554455555666555544332 11 12234555555566655555 3334
Q ss_pred CCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCcccccCCC
Q 008394 443 PAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLPSSLCKLK 519 (567)
Q Consensus 443 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 519 (567)
|. +..+++|+.|+|++|......|..+.. +|+.|++++|.++.+ |..+..+++|++|++++|++....+..+..++
T Consensus 212 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 32 555555555665555444433333322 555555555555544 33455555556666655554433334455555
Q ss_pred CCcEEeccCCCC
Q 008394 520 SLEILDLSGCSN 531 (567)
Q Consensus 520 ~L~~L~l~~~~~ 531 (567)
+|+.|++++|+.
T Consensus 291 ~L~~L~L~~Np~ 302 (452)
T 3zyi_A 291 YLVELHLHHNPW 302 (452)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEccCCCc
Confidence 555555555543
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=6.2e-21 Score=197.84 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=148.8
Q ss_pred CCCCeeEEeeCCCCCCCCCCC--CCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCC
Q 008394 351 RFTEVKYLHWHGYPLKSMPSN--ICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKL 428 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 428 (567)
.+++|++|++++|.+..++.. ..+++|++|++++|++..++...+..+++|++|++++|.... ..+..+..+++|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~---~~~~~~~~l~~L 162 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES---IPSYAFNRIPSL 162 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE---ECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc---cCHHHhhhCccc
Confidence 345788888888877776632 236778888888888888777666678888888888876532 223456777888
Q ss_pred cEEecCCCccCCccCC-cccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCccc-ChhhhccCCCcEEecCCC
Q 008394 429 VILNLRGSKSLKSLPA-GIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDC 505 (567)
Q Consensus 429 ~~L~l~~~~~~~~~p~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~ 505 (567)
++|++++|+.+..++. .+..+++|++|++++|.. ..+|.... .+|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 8888887666666664 567788888888888643 35554333 3788888888888866 556888888888888888
Q ss_pred ccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccc
Q 008394 506 KRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 506 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
.+....|..|.++++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 877777777888888888888888777655566788888888888888763
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=200.74 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=57.7
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++++.+..+.+..|.+ + ++|++|++++|.+.... +. .+. .+++|++|++++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~--l----~~L~~L~Ls~n~l~~~~----~~------~~~-----~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS--L----SKLRILIISHNRIQYLD----IS------VFK-----FNQELEYLDLSHN 79 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT--C----TTCCEEECCSSCCCEEE----GG------GGT-----TCTTCCEEECCSS
T ss_pred ccccEEECCCCcccccChhhccc--c----ccccEEecCCCccCCcC----hH------Hhh-----cccCCCEEecCCC
Confidence 45677778888777777777777 7 77888888777543321 11 111 2235555555555
Q ss_pred CCCCCCCCCCCCCceEEEccCCccccc--chhhhhhccCCcEEecccC
Q 008394 364 PLKSMPSNICAEQLVFLEVPNSSIEQL--WDGMKQHRGKLNQIIHATC 409 (567)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~n~i~~l--~~~~~~~l~~L~~L~l~~~ 409 (567)
.++.+|.. .+++|++|++++|.+..+ |..+. ++++|++|++++|
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n 125 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTT 125 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEES
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCc
Confidence 55555544 455555555555555542 22333 4555555555444
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.9e-20 Score=182.41 Aligned_cols=205 Identities=20% Similarity=0.167 Sum_probs=175.9
Q ss_pred eeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecC
Q 008394 355 VKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLR 434 (567)
Q Consensus 355 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 434 (567)
-+.++++++.++.+|... .++|++|++++|.+..++...+.++++|++|++++|.... ..+..+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR---IDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce---eCHhhcCCccCCCEEeCC
Confidence 368899999999998754 5799999999999999998777799999999999997533 234578899999999999
Q ss_pred CCccCCcc-CCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCCCccCcc
Q 008394 435 GSKSLKSL-PAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 435 ~~~~~~~~-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~ 510 (567)
+|..+..+ |..+..+++|++|++++|......|.... .+|++|++++|.++.+|.. +..+++|++|++++|.+...
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 99745555 67899999999999999887665555444 3999999999999988764 89999999999999987655
Q ss_pred CcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 511 LPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 511 ~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
.+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++++|+..+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc
Confidence 55569999999999999999888889999999999999999999999987654
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=9.5e-22 Score=213.21 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=161.0
Q ss_pred CCCCCCeeEEeeCCCCCCC------------------CCCCCC---CCCceEEEccCCcccc-cchhhhhhccCCcEEec
Q 008394 349 DPRFTEVKYLHWHGYPLKS------------------MPSNIC---AEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIH 406 (567)
Q Consensus 349 ~~~~~~L~~L~l~~~~~~~------------------l~~~~~---~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l 406 (567)
...+++|++|++++|.++. +|..+. +++|++|++++|.+.. +|..+. ++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEEC
Confidence 4567799999999999888 888765 7889999999998664 565555 8999999999
Q ss_pred ccCccccccCCCCCCCCCC------cCCcEEecCCCccCCccCC--cccCCCCCcEEEcCCCCCCCcCCcccc--CCCce
Q 008394 407 ATCKMLIAKTPNPTLIPHL------NKLVILNLRGSKSLKSLPA--GIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSC 476 (567)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~ 476 (567)
++|+.+. ....|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|...+.+| ... .+|++
T Consensus 281 s~n~~l~-~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 281 ACNRGIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp TTCTTSC-HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred cCCCCCc-cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 9986221 10112233443 88999999988855 8888 88889999999999887776777 332 28888
Q ss_pred eeccCccCcccChhhhccCC-CcEEecCCCccCccCcccccCCC--CCcEEeccCCCCCcccCcccC-------CCCCcc
Q 008394 477 LFLSGTAIEELPSSIELLLR-LEYLDLSDCKRLKSLPSSLCKLK--SLEILDLSGCSNLQRLPECLG-------QLSSLG 546 (567)
Q Consensus 477 L~l~~~~i~~lp~~~~~l~~-L~~L~l~~~~~~~~~p~~~~~l~--~L~~L~l~~~~~~~~~p~~l~-------~l~~L~ 546 (567)
|++++|.++.+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+..|..+. .+++|+
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 88888888888888888888 888888888865 7777766654 788888888888777777776 677788
Q ss_pred eeccccccccccchhhhh
Q 008394 547 TLLLEKPILREYQKASSK 564 (567)
Q Consensus 547 ~L~l~~~~l~~~p~~~~~ 564 (567)
.|++++|.++++|...++
T Consensus 437 ~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 437 SINLSNNQISKFPKELFS 454 (636)
T ss_dssp EEECCSSCCCSCCTHHHH
T ss_pred EEECcCCccCcCCHHHHc
Confidence 888888887777776543
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.2e-20 Score=189.37 Aligned_cols=253 Identities=17% Similarity=0.151 Sum_probs=129.0
Q ss_pred cceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccc-----cCccccC-CCCCCCee
Q 008394 283 SNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENK-----CKVSYLE-DPRFTEVK 356 (567)
Q Consensus 283 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~-----~~l~~~~-~~~~~~L~ 356 (567)
...++.+.++.+.+..++ .|.+ + ++|++|++.+|.........-...+..+ ..+..++ ...+++|+
T Consensus 87 l~~L~~L~L~~n~i~~~~--~~~~--l----~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~ 158 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDIS--ALQN--L----TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158 (347)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTT--C----TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred CCcCCEEEccCCcccCch--HHcC--C----CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCc
Confidence 345666777777666653 3555 5 7777777777653322110000000000 0000000 12334555
Q ss_pred EEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCC
Q 008394 357 YLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGS 436 (567)
Q Consensus 357 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 436 (567)
+|++++|.+..++....+++|++|++++|.+..++. ...+++|+.|++++|.... ...+..+++|++|++++|
T Consensus 159 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 159 YLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-----CGGGGGCTTCCEEECCSS
T ss_pred EEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC-----CchhhcCCcCCEEEccCC
Confidence 555555555554443335555555555555555444 2245555555555553321 111455566666666666
Q ss_pred ccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccc
Q 008394 437 KSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSL 515 (567)
Q Consensus 437 ~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 515 (567)
. +..+|. +..+++|++|++++|.... ++.... .+|++|++++|.++.+| .+..+++|++|++++|++.+..|..+
T Consensus 232 ~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 232 K-ITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp C-CCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred c-cCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHh
Confidence 5 333333 5566666666666654332 222221 26666666666666553 35566666666666666555555556
Q ss_pred cCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccc
Q 008394 516 CKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 516 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
..+++|+.|++++|++.+..| +..+++|+.|++++|.++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666666666666544333 556666666666666554
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.5e-20 Score=206.01 Aligned_cols=262 Identities=15% Similarity=0.104 Sum_probs=165.5
Q ss_pred cceEEEEEeecCcccc------------------cChhh-hhcccccccCCCeeEEEEeeCCCCCccccccccccccccC
Q 008394 283 SNLLWVITLEYSSIYK------------------LDMDI-FINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCK 343 (567)
Q Consensus 283 ~~~~~~l~l~~~~~~~------------------~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~ 343 (567)
...++.+.++.+.+.. ++... |.+ + ++|++|++++|..... +|..+.++..
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--L----~~L~~L~Ls~N~l~~~----iP~~l~~L~~ 516 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN--L----KDLTDVELYNCPNMTQ----LPDFLYDLPE 516 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--C----TTCCEEEEESCTTCCS----CCGGGGGCSS
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc--C----CCCCEEECcCCCCCcc----ChHHHhCCCC
Confidence 3456677777777766 33322 335 5 7777777777753332 3333333333
Q ss_pred ccccCC----------------------CCCCCeeEEeeCCCCCCCCCC--CC-CCCCceEEEccCCcccccchhhhhhc
Q 008394 344 VSYLED----------------------PRFTEVKYLHWHGYPLKSMPS--NI-CAEQLVFLEVPNSSIEQLWDGMKQHR 398 (567)
Q Consensus 344 l~~~~~----------------------~~~~~L~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~n~i~~l~~~~~~~l 398 (567)
+..+.. ..+++|++|++++|.+..+|. .+ .+++|+.|++++|.+..+| .+. ++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L 594 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG-TN 594 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC-TT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc-CC
Confidence 222221 123378888888888877777 33 4778888888888887777 333 77
Q ss_pred cCCcEEecccCccccccCCCCCCCCCCcC-CcEEecCCCccCCccCCcccCCCC--CcEEEcCCCCCCCcCCccc-----
Q 008394 399 GKLNQIIHATCKMLIAKTPNPTLIPHLNK-LVILNLRGSKSLKSLPAGIFNLEF--LTTLDLSGCPKLKRLPEIS----- 470 (567)
Q Consensus 399 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~p~~l~~l~~--L~~L~Ls~~~~~~~~~~~~----- 470 (567)
++|++|++++|... ..+..+..+++ |++|++++|.+ ..+|..+..+.. |+.|++++|...+.+|...
T Consensus 595 ~~L~~L~Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE----EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp SEESEEECCSSCCS----CCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred CcceEEECcCCccc----cchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 88888888887643 23445777777 88888888874 477776665543 7788887776655444322
Q ss_pred --cCCCceeeccCccCcccChhh-hccCCCcEEecCCCccCccCcccccCC--------CCCcEEeccCCCCCcccCccc
Q 008394 471 --SSNTSCLFLSGTAIEELPSSI-ELLLRLEYLDLSDCKRLKSLPSSLCKL--------KSLEILDLSGCSNLQRLPECL 539 (567)
Q Consensus 471 --~~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~p~~~~~l--------~~L~~L~l~~~~~~~~~p~~l 539 (567)
..+|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence 126777777777777777664 36777777777777644 555543322 26777777776555 566666
Q ss_pred C--CCCCcceeccccccccccchhhh
Q 008394 540 G--QLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 540 ~--~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
. .+++|+.|+|++|.++++|....
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred hhccCCCcCEEEeCCCCCCccchhhh
Confidence 5 67777777777777766665543
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.9e-20 Score=179.55 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=138.2
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
.++++++++++.++.+|..+. ++++.|++++|++..++...+.++++|++|++++|.... ..+..+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe---eChhhhcCCCCCCEEE
Confidence 356777777777777776543 667788888888777776655577888888887776421 2233456777888888
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCCCccCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~ 509 (567)
+++|.+....+..+..+++|++|++++|......+.... .+|++|++++|.++.+|.. +..+++|++|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 887774433334566777888888887665444443322 3788888888888777654 6778888888888877655
Q ss_pred cCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccc
Q 008394 510 SLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 510 ~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 555557778888888888876665444457777888888888877643
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=9.1e-21 Score=186.73 Aligned_cols=215 Identities=20% Similarity=0.186 Sum_probs=178.4
Q ss_pred CccccCCCCCCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCccccc---chhhhhhccCCcEEecccCccccccCC
Q 008394 343 KVSYLEDPRFTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQL---WDGMKQHRGKLNQIIHATCKMLIAKTP 417 (567)
Q Consensus 343 ~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l---~~~~~~~l~~L~~L~l~~~~~~~~~~~ 417 (567)
++..+|..-.++|++|++++|.++.+|... .+++|++|++++|.+..+ +.... .+++|++|++++|....
T Consensus 18 ~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~---- 92 (306)
T 2z66_A 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT---- 92 (306)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEE----
T ss_pred CcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCcccc----
Confidence 344455434469999999999999999854 589999999999999866 45555 79999999999997543
Q ss_pred CCCCCCCCcCCcEEecCCCccCCccC-CcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcc--cChhhh
Q 008394 418 NPTLIPHLNKLVILNLRGSKSLKSLP-AGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEE--LPSSIE 492 (567)
Q Consensus 418 ~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~--lp~~~~ 492 (567)
.+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+.... .+|++|++++|.++. +|..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 23347789999999999998544433 4688999999999999887666665544 499999999999985 788999
Q ss_pred ccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 493 LLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 493 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++..++..
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 9999999999999988777888999999999999999887766667899999999999999998876543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2e-20 Score=190.89 Aligned_cols=243 Identities=18% Similarity=0.140 Sum_probs=133.5
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.. + ++|++|++.+|...... +. . +..+++|++|++++|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~--l----~~L~~L~L~~n~l~~~~----~~------~-----~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAY--A----HTIQKLYMGFNAIRYLP----PH------V-----FQNVPLLTVLVLERN 127 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTT--C----TTCCEEECCSSCCCCCC----TT------T-----TTTCTTCCEEECCSS
T ss_pred ccCcEEECCCCcccccChhhccC--C----CCcCEEECCCCCCCcCC----HH------H-----hcCCCCCCEEECCCC
Confidence 45677888888888888888888 7 88999999887533221 11 1 223458888888888
Q ss_pred CCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCC-------------
Q 008394 364 PLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKL------------- 428 (567)
Q Consensus 364 ~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L------------- 428 (567)
.++.+|... .+++|++|++++|.+..+++..+.++++|++|++++|.... . .+..+++|
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~----~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V----DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--C----CGGGCTTCSEEECCSSCCSEE
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc--c----ccccccccceeeccccccccc
Confidence 888887754 37888888888888888777666578888888888876432 1 12223333
Q ss_pred ------cEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcc-ccCCCceeeccCccCccc-ChhhhccCCCcEE
Q 008394 429 ------VILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEI-SSSNTSCLFLSGTAIEEL-PSSIELLLRLEYL 500 (567)
Q Consensus 429 ------~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L 500 (567)
++|++++|. +..+|.. ..++|+.|++++|..... +.. ...+|++|++++|.++.+ |..+..+++|++|
T Consensus 202 ~~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 202 AIPIAVEELDASHNS-INVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp ECCSSCSEEECCSSC-CCEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCCCcceEEECCCCe-eeecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 333333333 1112211 123455555555433221 111 112455555555554433 3344445555555
Q ss_pred ecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccc
Q 008394 501 DLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 501 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
++++|++. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|
T Consensus 278 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 278 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp ECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred ECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC
Confidence 55544422 23333444445555555544332 33333444444444444444444443
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.2e-20 Score=200.05 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=72.2
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.+ + ++|++|++++|.+.... +. . +..+++|++|++++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~--l----~~L~~L~Ls~N~l~~~~----~~------~-----~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISF--L----SELRVLRLSHNRIRSLD----FH------V-----FLFNQDLEYLDVSHN 110 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTT--C----TTCCEEECCSCCCCEEC----TT------T-----TTTCTTCCEEECTTS
T ss_pred CCcCEEECCCCCccccChhhhcc--C----CCccEEECCCCCCCcCC----HH------H-----hCCCCCCCEEECCCC
Confidence 56788999999999888888888 8 99999999888643221 11 1 223447777777777
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccch-hhhhhccCCcEEecccCc
Q 008394 364 PLKSMPSNICAEQLVFLEVPNSSIEQLWD-GMKQHRGKLNQIIHATCK 410 (567)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~l~~L~~L~l~~~~ 410 (567)
.++.+|.. .+++|++|++++|.+..++. ..+.++++|++|++++|.
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 77777666 66777777777777776542 233366677777666664
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=4.6e-20 Score=185.14 Aligned_cols=240 Identities=14% Similarity=0.140 Sum_probs=139.7
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.. |.. + ++|++|++.+|...... . ...+++|++|++++|
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~--l----~~L~~L~L~~n~i~~~~------------~-----~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSN--L----VKLTNLYIGTNKITDIS------------A-----LQNLTNLRELYLNED 120 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTT--C----TTCCEEECCSSCCCCCG------------G-----GTTCTTCSEEECTTS
T ss_pred CCccEEEccCCccccchh--hhc--C----CcCCEEEccCCcccCch------------H-----HcCCCcCCEEECcCC
Confidence 346667777777666654 655 6 77888888776533211 1 122335555555555
Q ss_pred CCCCCCCCCCCCCceEEEccCC-----------------------cccccchhhhhhccCCcEEecccCccccccCCCCC
Q 008394 364 PLKSMPSNICAEQLVFLEVPNS-----------------------SIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPT 420 (567)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~n-----------------------~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 420 (567)
.+..++....+++|++|++++| .+..++. ...+++|++|++++|.... ..
T Consensus 121 ~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-----~~ 193 (347)
T 4fmz_A 121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-----IS 193 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-----CG
T ss_pred cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-----cc
Confidence 5555544333444444444444 3333332 1134444444444443211 11
Q ss_pred CCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEE
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYL 500 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 500 (567)
.+..+++|++|++++|.+. .++. +..+++|++|++++|......+.....+|++|++++|.++.+ ..+..+++|++|
T Consensus 194 ~~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L 270 (347)
T 4fmz_A 194 PLASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKML 270 (347)
T ss_dssp GGGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEE
T ss_pred cccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEE
Confidence 1344445555555554422 2222 556667777777766544333322223777777777777765 356777788888
Q ss_pred ecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccch
Q 008394 501 DLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 501 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
++++|.+.. +| .+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.++++++
T Consensus 271 ~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 271 NVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp ECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred EccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 888776443 33 47778888888888887777777778888888888888888888766
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.7e-20 Score=201.41 Aligned_cols=205 Identities=20% Similarity=0.131 Sum_probs=175.2
Q ss_pred CCCCCeeEEeeCCCCCCCCC---CCC-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCC
Q 008394 350 PRFTEVKYLHWHGYPLKSMP---SNI-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHL 425 (567)
Q Consensus 350 ~~~~~L~~L~l~~~~~~~l~---~~~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 425 (567)
..+++|++|++++|.+..++ ..+ .+++|++|++++|.+..++...+.++++|++|++++|+... ...+..+..+
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l 424 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--KDAQSPFQNL 424 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC--CTTCCTTTTC
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC--cccchhhhCc
Confidence 35679999999999998763 333 48999999999999998877777699999999999997642 2334457899
Q ss_pred cCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCc-CC--ccc--cCCCceeeccCccCccc-ChhhhccCCCcE
Q 008394 426 NKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKR-LP--EIS--SSNTSCLFLSGTAIEEL-PSSIELLLRLEY 499 (567)
Q Consensus 426 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~-~~--~~~--~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~ 499 (567)
++|++|++++|.+....|..+..+++|++|++++|...+. ++ ... ..+|++|++++|.++.+ |..+..+++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999997777888899999999999999976542 22 222 24999999999999977 567999999999
Q ss_pred EecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccc
Q 008394 500 LDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 500 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
|++++|++.+..|..+.++++| .|++++|.+.+..|..+..+++|+.|++++|.+..
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999999899999999999 99999999998888888999999999999998865
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=8.1e-22 Score=195.17 Aligned_cols=238 Identities=12% Similarity=0.066 Sum_probs=180.6
Q ss_pred cceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCC
Q 008394 283 SNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHG 362 (567)
Q Consensus 283 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~ 362 (567)
...++.+.++.+.+..+.+..|.+ + ++|++|++++|..... .++..+++|++|++++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~--l----~~L~~L~Ls~n~l~~~-----------------~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAP--F----TKLELLNLSSNVLYET-----------------LDLESLSTLRTLDLNN 89 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTT--C----TTCCEEECTTSCCEEE-----------------EEETTCTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhC--C----CcCCEEECCCCcCCcc-----------------hhhhhcCCCCEEECcC
Confidence 345778888888888888888888 7 8899999888753211 1123456889999998
Q ss_pred CCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCcc
Q 008394 363 YPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSL 442 (567)
Q Consensus 363 ~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 442 (567)
|.++.++.. ++|++|++++|.+..++.. .+++|++|++++|+... ..+..+..+++|++|++++|.+.+..
T Consensus 90 n~l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CccccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCCCCccc
Confidence 888776633 7888999999988887654 35788999999887532 22345677888999999988866555
Q ss_pred CCccc-CCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCC
Q 008394 443 PAGIF-NLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSL 521 (567)
Q Consensus 443 p~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 521 (567)
|..+. .+++|++|++++|......+.....+|++|++++|.++.+|..+..+++|++|++++|++. .+|..+..+++|
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 55553 6889999999987654432233345899999999999888888888899999999988755 678778888899
Q ss_pred cEEeccCCCCC-cccCcccCCCCCcceeccccc
Q 008394 522 EILDLSGCSNL-QRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 522 ~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~ 553 (567)
+.|++++|++. ..+|..+..+++|+.|+++++
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 99999998887 677777888888888888744
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3e-20 Score=200.19 Aligned_cols=242 Identities=19% Similarity=0.139 Sum_probs=138.5
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.. + ++|++|++++|.+..... . . +..+++|++|++++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~--l----~~L~~L~L~~n~l~~~~~----~------~-----~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAY--A----HTIQKLYMGFNAIRYLPP----H------V-----FQNVPLLTVLVLERN 133 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTT--C----TTCCEEECCSSCCCCCCT----T------T-----TTTCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCCCCChHHhcC--C----CCCCEEECCCCcCCCCCH----H------H-----HcCCCCCCEEEeeCC
Confidence 35677888888888888888888 7 899999998875332211 1 1 234558888888888
Q ss_pred CCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCcc---
Q 008394 364 PLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKS--- 438 (567)
Q Consensus 364 ~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--- 438 (567)
.+..+|... .+++|++|++++|.+..+++..+.++++|++|++++|.... . .+..+++|++|++++|.+
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~----~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V----DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB--C----CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC--c----ChhhhhhhhhhhcccCccccc
Confidence 888888754 47888888888888888877666688888888888886432 1 122333333333333221
Q ss_pred ---------------CCccC--------------------CcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccC
Q 008394 439 ---------------LKSLP--------------------AGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSG 481 (567)
Q Consensus 439 ---------------~~~~p--------------------~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~ 481 (567)
+..+| ..+..+++|+.|+|++|......|..+. .+|++|++++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 11111 2344445555555555444333333322 1455555555
Q ss_pred ccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccc
Q 008394 482 TAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 482 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
|.++.+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.. +| +..+++|+.|++++|.+.
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCC
Confidence 555555444444555555555554433 344444555555555555544432 11 344455555555555443
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=190.06 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=104.8
Q ss_pred CeeEEeeCCCCCCCCCCC--CCCCCceEEEccCCcccccch-hhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 354 EVKYLHWHGYPLKSMPSN--ICAEQLVFLEVPNSSIEQLWD-GMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~n~i~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
+|++|++++|.++.++.. ..+++|++|++++|.+..++. ..+.++++|++|++++|.... . ..+..+..+++|++
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~-~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-K-IQRKDFAGLTFLEE 178 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-E-ECTTTTTTCCEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-c-cCHHHccCCCCCCE
Confidence 445555555544444432 124445555555554444444 233344455555554443211 1 11223444445555
Q ss_pred EecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc---cCCCceeeccCccCcccChh----hhccCCCcEEecC
Q 008394 431 LNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS---SSNTSCLFLSGTAIEELPSS----IELLLRLEYLDLS 503 (567)
Q Consensus 431 L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~---~~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~ 503 (567)
|++++|.+.+..|..+..+++|++|++++|.. ..+|... ..+|++|++++|.++.++.. ......++.+++.
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 55554443333344444455555555544432 2222211 12445555555444433211 1223334444444
Q ss_pred CCccCc----cCcccccCCCCCcEEeccCCCCCcccCcc-cCCCCCcceeccccccccccch
Q 008394 504 DCKRLK----SLPSSLCKLKSLEILDLSGCSNLQRLPEC-LGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 504 ~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
++.+.+ .+|..+.++++|+.|++++|.+. .+|.. ++.+++|++|++++|.+...++
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 443322 35667889999999999998776 67766 5899999999999998876554
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=1e-19 Score=177.35 Aligned_cols=198 Identities=19% Similarity=0.135 Sum_probs=162.3
Q ss_pred CCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 352 FTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
+++++.+++.++.++.+|..+. ++++.|++++|.+..++...+.++++|++|++++|.... . .....+++|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--L---QVDGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--E---ECCSCCTTCCEE
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--c---cCCCCCCcCCEE
Confidence 3489999999999999987664 789999999999999887777699999999999997543 1 123678999999
Q ss_pred ecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCCCccC
Q 008394 432 NLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRL 508 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~ 508 (567)
++++|. +..+|..+..+++|++|++++|......+..+. .+|++|++++|.++.+|.. +..+++|+.|++++|++.
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 999998 668888888999999999999866544444333 3899999999999988765 688999999999999866
Q ss_pred ccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccc
Q 008394 509 KSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 509 ~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 444445788999999999997765 788888888899999999987643
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.1e-20 Score=202.17 Aligned_cols=206 Identities=18% Similarity=0.153 Sum_probs=176.2
Q ss_pred CCCCCCCeeEEeeCCCCCCCC---CCCC-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCC
Q 008394 348 EDPRFTEVKYLHWHGYPLKSM---PSNI-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIP 423 (567)
Q Consensus 348 ~~~~~~~L~~L~l~~~~~~~l---~~~~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 423 (567)
+...+++|++|++++|.++.+ +..+ .+++|++|++++|.+..++..+. ++++|++|++++|.... .+....+.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~ 421 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKR--VTEFSAFL 421 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCT-TCTTCCEEECTTSEEES--TTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhcc-CCCCCCeeECCCCccCC--ccChhhhh
Confidence 455678999999999998766 3332 47899999999999999986665 89999999999998653 22235788
Q ss_pred CCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCc-CCcccc--CCCceeeccCccCccc-ChhhhccCCCcE
Q 008394 424 HLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKR-LPEISS--SNTSCLFLSGTAIEEL-PSSIELLLRLEY 499 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~-~~~~~~--~~L~~L~l~~~~i~~l-p~~~~~l~~L~~ 499 (567)
.+++|++|++++|.+.+..|..+..+++|++|++++|..... .|.... .+|++|++++|.++.+ |..+..+++|++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 999999999999998888888899999999999999877663 565544 4999999999999976 566999999999
Q ss_pred EecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCC-Ccceeccccccccc
Q 008394 500 LDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLS-SLGTLLLEKPILRE 557 (567)
Q Consensus 500 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~l~~ 557 (567)
|++++|++.+..|..+.++++|+.|++++|.+. .+|..+..++ +|+.|++++|.+..
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 999999988888999999999999999998866 7888888887 59999999998865
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.4e-21 Score=201.86 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=144.9
Q ss_pred eEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCC
Q 008394 285 LLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYP 364 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~ 364 (567)
.++.+.++++.+..+.+..|.. + ++|++|++++|.+... .|+..+++|++|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~--l----~~L~~L~Ls~N~l~~~-----------------~~l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAP--F----TKLELLNLSSNVLYET-----------------LDLESLSTLRTLDLNNNY 91 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTT--C----TTCCEEECTTSCCEEE-----------------EECTTCTTCCEEECCSSE
T ss_pred CccEEEeeCCcCCCCCHHHHhC--C----CCCCEEEeeCCCCCCC-----------------cccccCCCCCEEEecCCc
Confidence 5666777777776666666666 6 6777777766642111 112334467777777776
Q ss_pred CCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCC
Q 008394 365 LKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPA 444 (567)
Q Consensus 365 ~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 444 (567)
++.+|.. ++|++|++++|.+..++.. .+++|++|++++|.... ..+..+..+++|++|++++|.+.+..|.
T Consensus 92 l~~l~~~---~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 92 VQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp EEEEEEC---TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCCCCC---CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 6665533 5677777777777665543 34667777777765422 1233455667777777777765555555
Q ss_pred ccc-CCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcE
Q 008394 445 GIF-NLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEI 523 (567)
Q Consensus 445 ~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 523 (567)
.+. .+++|++|+|++|......+.....+|++|++++|.++.+|+.+..+++|++|++++|.+. .+|..+..+++|+.
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred HHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCE
Confidence 554 5677777777776544332233334677777777777777666777777777777776644 36666667777777
Q ss_pred EeccCCCCC-cccCcccCCCCCcceeccc
Q 008394 524 LDLSGCSNL-QRLPECLGQLSSLGTLLLE 551 (567)
Q Consensus 524 L~l~~~~~~-~~~p~~l~~l~~L~~L~l~ 551 (567)
|++++|++. +.+|..+..++.|+.|+++
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777776665 4555666666666666664
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=209.49 Aligned_cols=260 Identities=15% Similarity=0.073 Sum_probs=158.7
Q ss_pred ccceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeC
Q 008394 282 VSNLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWH 361 (567)
Q Consensus 282 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~ 361 (567)
.+..++.+.++++.+..+.+..|.+ + .+|++|++++|.....- .+. . +..+++|++|+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~--l----~~L~~LdLs~n~~~~~i---~~~------~-----f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPF--L----EQLQLLELGSQYTPLTI---DKE------A-----FRNLPNLRILDLG 81 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSS--C----CSCSEEEECTTCCCCEE---CTT------T-----TSSCTTCCEEECT
T ss_pred CCCCcCEEECCCCcCCccChhHCcc--c----ccCeEEeCCCCCCcccc---CHH------H-----hcCCCCCCEEECC
Confidence 4567788999999999888888888 8 99999999887421110 011 1 2234467777777
Q ss_pred CCCCCCC-CCCC-CCCCceEEEccCCcccc-cch-hhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCc
Q 008394 362 GYPLKSM-PSNI-CAEQLVFLEVPNSSIEQ-LWD-GMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSK 437 (567)
Q Consensus 362 ~~~~~~l-~~~~-~~~~L~~L~l~~n~i~~-l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 437 (567)
+|.+..+ |..+ .+++|++|++++|.+.. ++. ..+.++++|++|++++|.... ...+..+..+++|++|++++|.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGTCSSCCEEEEESSC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhHhhCCCCCEEECCCCc
Confidence 7766655 3333 36667777777776664 222 223366677777777665432 2222345666666666666665
Q ss_pred cCCcc--------------------------CCcccCCCC------CcEEEcCCCCCCCcCCccc---------------
Q 008394 438 SLKSL--------------------------PAGIFNLEF------LTTLDLSGCPKLKRLPEIS--------------- 470 (567)
Q Consensus 438 ~~~~~--------------------------p~~l~~l~~------L~~L~Ls~~~~~~~~~~~~--------------- 470 (567)
+.+.. |..+..+++ |+.|++++|......+...
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 43333 333333332 7777777764322211100
Q ss_pred -------------------------cCCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCcccccCCCCCcEE
Q 008394 471 -------------------------SSNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEIL 524 (567)
Q Consensus 471 -------------------------~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 524 (567)
..+|+.|++++|.+..+ |..+..+++|++|++++|.+.+..|..|..+++|+.|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 12567777777776654 3446677777777777777666666667777777777
Q ss_pred eccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 525 DLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 525 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
++++|.+....|..+..+++|+.|++++|.+..+++..+
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence 777776665556666777777777777777766665433
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=195.17 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=74.2
Q ss_pred CCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCC--cCCcccc--CCCceeeccCccCcc-cChh-hhccCCC
Q 008394 424 HLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLK--RLPEISS--SNTSCLFLSGTAIEE-LPSS-IELLLRL 497 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~--~~~~~~~--~~L~~L~l~~~~i~~-lp~~-~~~l~~L 497 (567)
.+++|++|++++|.+.+.+|..+..+++|++|++++|.... .+|.... .+|++|++++|.++. +|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 44555555555555444455555555556666665554332 2222221 255566666555554 5543 4455555
Q ss_pred cEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchh
Q 008394 498 EYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 498 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
++|++++|++.+.+|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|..
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 5555555554444444332 45666666665444 5666566677777777777777776665
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.3e-20 Score=180.14 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=157.2
Q ss_pred CCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 352 FTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
+++|+.|++.+|.+..++....+++|++|++++|.+..++. +. ++++|++|++++|.... ...+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~-~l~~L~~L~L~~n~l~~-----~~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LK-NLTKITELELSGNPLKN-----VSAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GT-TCCSCCEEECCSCCCSC-----CGGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-Hc-cCCCCCEEEccCCcCCC-----chhhcCCCCCCEE
Confidence 34899999999999888865568899999999999998877 44 89999999999986432 3357788999999
Q ss_pred ecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccC
Q 008394 432 NLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSL 511 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~ 511 (567)
++++|. +..+|. +..+++|++|++++|......+.....+|++|++++|.++.++. +..+++|++|++++|.+.. +
T Consensus 113 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~ 188 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-I 188 (308)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C
T ss_pred ECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-C
Confidence 999988 445554 88899999999999765443332233489999999999998876 8889999999999988554 4
Q ss_pred cccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhh
Q 008394 512 PSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 512 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
+. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|.++..|...
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCeee
Confidence 44 788999999999998776543 3788999999999999998866543
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=2.3e-19 Score=187.40 Aligned_cols=250 Identities=17% Similarity=0.135 Sum_probs=129.4
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccc----------cCCCCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSY----------LEDPRFT 353 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~----------~~~~~~~ 353 (567)
..++.+.++.+.+..+.+ |.+ + ++|++|++.+|....... +.++..+.. .+...++
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~--l----~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~l~ 177 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKN--L----TNLNRLELSSNTISDISA------LSGLTSLQQLSFGNQVTDLKPLANLT 177 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTT--C----TTCSEEEEEEEEECCCGG------GTTCTTCSEEEEEESCCCCGGGTTCT
T ss_pred CCCCEEECCCCCCCCChH--HcC--C----CCCCEEECCCCccCCChh------hccCCcccEeecCCcccCchhhccCC
Confidence 345666666666655543 555 5 777777776664332211 111111110 1133455
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
+|+.|++++|.+..++....+++|++|++++|.+..+++ .. .+++|++|++++|.... ...+..+++|++|++
T Consensus 178 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LG-ILTNLDELSLNGNQLKD-----IGTLASLTNLTDLDL 250 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEEC
T ss_pred CCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-cc-ccCCCCEEECCCCCccc-----chhhhcCCCCCEEEC
Confidence 677777777766666554445666666666666655544 22 45555555555554221 123344445555555
Q ss_pred CCCccCC---------------------ccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhh
Q 008394 434 RGSKSLK---------------------SLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIE 492 (567)
Q Consensus 434 ~~~~~~~---------------------~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~ 492 (567)
++|.+.+ .+|. +..+++|+.|++++|......+.....+|++|++++|.++.++. +.
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 328 (466)
T 1o6v_A 251 ANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VS 328 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GG
T ss_pred CCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hc
Confidence 5444222 2222 44455555555555433322222222355555555555554443 45
Q ss_pred ccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccch
Q 008394 493 LLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 493 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
.+++|++|++++|++.+ ++ .+.++++|+.|++++|.+.+..| +..+++|+.|++++|.++.+|.
T Consensus 329 ~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred cCccCCEeECCCCccCC-ch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 55666666666655433 22 35666666666666666655544 5666777777777776666543
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.1e-19 Score=195.77 Aligned_cols=259 Identities=20% Similarity=0.155 Sum_probs=174.5
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.+ + ++|++|++.+|...... ++. ..+..+ ...+|+.|++++|
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~--l----~~L~~L~Ls~n~~~~~~---l~~-----~~f~~~---~~~~L~~L~L~~n 391 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTG--L----INLKYLSLSNSFTSLRT---LTN-----ETFVSL---AHSPLHILNLTKN 391 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTT--C----TTCCEEECTTCBSCCCE---ECT-----TTTGGG---TTSCCCEEECTTS
T ss_pred CCCCEEECCCCccCCCChhHhcc--c----cCCcEEECCCCchhhhh---cch-----hhhccc---ccCcCceEECCCC
Confidence 45667777777777777777777 6 77888887765321110 000 000001 1247888888888
Q ss_pred CCCCCCC-CC-CCCCceEEEccCCcccc-cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccC-
Q 008394 364 PLKSMPS-NI-CAEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSL- 439 (567)
Q Consensus 364 ~~~~l~~-~~-~~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 439 (567)
.+..++. .+ .+++|++|++++|.+.. ++...+.++++|++|++++|+... ..+..+..+++|++|++++|.+.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ---LTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE---CCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce---eChhhhhcCcccccchhccccccc
Confidence 8777643 23 36788888888888864 555555578888888888887532 23445677888888888887643
Q ss_pred -CccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccCh---------hhhccCCCcEEecCCCcc
Q 008394 440 -KSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPS---------SIELLLRLEYLDLSDCKR 507 (567)
Q Consensus 440 -~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~---------~~~~l~~L~~L~l~~~~~ 507 (567)
+.+|..+..+++|++|++++|......+.... .+|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 56677788888888888888765543333332 378888888888775522 267778888888888775
Q ss_pred CccCcc-cccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 508 LKSLPS-SLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 508 ~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
. .+|. .|.++++|+.|++++|.+....+..+..+++|+.|++++|.++.+|+..+
T Consensus 549 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 549 D-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred C-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 5 4554 47788888888888877664444456778888888888888888777644
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.7e-19 Score=197.89 Aligned_cols=255 Identities=17% Similarity=0.103 Sum_probs=157.6
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.+ + ++|++|++++|...... +. .+. .+++|++|++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~--l----~~L~~L~Ls~n~l~~~~----~~------~~~-----~l~~L~~L~L~~n 83 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR--Y----SQLTSLDVGFNTISKLE----PE------LCQ-----KLPMLKVLNLQHN 83 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG--G----TTCSEEECCSSCCCCCC----TT------HHH-----HCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCCCcCHHHHhC--C----CcCcEEECCCCccCccC----HH------HHh-----cccCcCEEECCCC
Confidence 56788888988888888888888 7 88999999887543221 11 122 2347778888877
Q ss_pred CCCCCCCC-C-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCc
Q 008394 364 PLKSMPSN-I-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKS 441 (567)
Q Consensus 364 ~~~~l~~~-~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 441 (567)
.++.+|.. + .+++|++|++++|.+..+++..+.++++|++|++++|.... ..+..+..+++|++|++++|.+.+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC---CCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc---cCchhhcccccCCEEEccCCccccc
Confidence 77777763 2 46778888888887777776555577778888887776432 2334556677777777777764333
Q ss_pred cCCccc--CCCCCcEEEcCCCCCCCcC---------------------------------------------------Cc
Q 008394 442 LPAGIF--NLEFLTTLDLSGCPKLKRL---------------------------------------------------PE 468 (567)
Q Consensus 442 ~p~~l~--~l~~L~~L~Ls~~~~~~~~---------------------------------------------------~~ 468 (567)
.+..+. .+++|++|++++|...... |.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 333222 3456666666665433222 21
Q ss_pred ccc----CCCceeeccCccCcccC-hhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCc-----ccCc-
Q 008394 469 ISS----SNTSCLFLSGTAIEELP-SSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ-----RLPE- 537 (567)
Q Consensus 469 ~~~----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-----~~p~- 537 (567)
... .+|++|++++|.++.++ ..+..+++|++|++++|.+.+..|..+.++++|+.|++++|...+ .+|.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 111 13777777777776554 456777777777777777666555556666666666655443221 2222
Q ss_pred ---ccCCCCCcceeccccccccccchhh
Q 008394 538 ---CLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 538 ---~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
.+..+++|+.|++++|.++.+++..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhH
Confidence 3455666666666666666655443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=190.29 Aligned_cols=209 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCeeEEeeCCCCCCCCCCC-C-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 353 TEVKYLHWHGYPLKSMPSN-I-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
++|++|++++|.++.++.. + .+++|++|++++|.+..++...+.++++|++|++++|+.. ..+....+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCcE
Confidence 3455555555544444321 1 2444555555555555444443334455555555544322 1111123444455555
Q ss_pred EecCCCccCCcc-CCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChh-hhccCCCcEEecCCCc
Q 008394 431 LNLRGSKSLKSL-PAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCK 506 (567)
Q Consensus 431 L~l~~~~~~~~~-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 506 (567)
|++++|...+.+ |..+..+++|++|++++|......|..... +|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 555444323222 233444455555555544433333332222 445555555544444433 2234455555555544
Q ss_pred cCccCcccc---cCCCCCcEEeccCCCCCc----ccCcccCCCCCcceeccccccccccchhhh
Q 008394 507 RLKSLPSSL---CKLKSLEILDLSGCSNLQ----RLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 507 ~~~~~p~~~---~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
+.+..+..+ .....++.++++++.+.+ .+|..+..+++|+.|++++|.++++|+..+
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 333222211 123344444444444332 356667889999999999999999998764
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2e-20 Score=185.17 Aligned_cols=235 Identities=13% Similarity=0.008 Sum_probs=184.0
Q ss_pred EEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCC
Q 008394 287 WVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLK 366 (567)
Q Consensus 287 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 366 (567)
....+..+.+.......|.. + ++|+.|++++|.+.... +. .+ ..+++|++|++++|.++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~--~----~~L~~L~L~~n~l~~~~----~~------~~-----~~l~~L~~L~Ls~n~l~ 71 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQS--A----WNVKELDLSGNPLSQIS----AA------DL-----APFTKLELLNLSSNVLY 71 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTT--G----GGCSEEECTTSCCCCCC----HH------HH-----TTCTTCCEEECTTSCCE
T ss_pred eEeeccccchhhhHHHHhcc--C----CCCCEEECcCCccCcCC----HH------Hh-----hCCCcCCEEECCCCcCC
Confidence 33334444444444555555 5 79999999998643321 11 12 24569999999999998
Q ss_pred CCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcc
Q 008394 367 SMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGI 446 (567)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l 446 (567)
.++....+++|++|++++|.+..++. .++|++|++++|.... . + ...+++|++|++++|.+....|..+
T Consensus 72 ~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~-~-~----~~~~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 72 ETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR-V-S----CSRGQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp EEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSE-E-E----ECCCSSCEEEECCSSCCCSGGGBCT
T ss_pred cchhhhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCC-c-C----ccccCCCCEEECCCCCCCCccchhh
Confidence 77765568999999999999998763 4899999999997643 1 1 2347889999999999666666778
Q ss_pred cCCCCCcEEEcCCCCCCCcCCcccc---CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcE
Q 008394 447 FNLEFLTTLDLSGCPKLKRLPEISS---SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEI 523 (567)
Q Consensus 447 ~~l~~L~~L~Ls~~~~~~~~~~~~~---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 523 (567)
..+++|++|++++|......+.... .+|++|++++|.++.+|.. ..+++|++|++++|.+. .+|..+..+++|+.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCC-EECGGGGGGTTCSE
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCC-cchhhhcccCcccE
Confidence 8999999999999877665555443 5999999999999988644 35999999999999865 56666999999999
Q ss_pred EeccCCCCCcccCcccCCCCCcceecccccccc
Q 008394 524 LDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 524 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 999998766 68888999999999999999987
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=193.84 Aligned_cols=136 Identities=19% Similarity=0.174 Sum_probs=93.5
Q ss_pred CCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCC--cCCcccc--CCCceeeccCccCcc-cChh-hhccCC
Q 008394 423 PHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLK--RLPEISS--SNTSCLFLSGTAIEE-LPSS-IELLLR 496 (567)
Q Consensus 423 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~--~~~~~~~--~~L~~L~l~~~~i~~-lp~~-~~~l~~ 496 (567)
..+++|++|++++|.+.+..|..+..+++|++|++++|.... .+|.... .+|++|++++|.++. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456777777777777666677777777777777777765433 2222222 377777777777775 6654 666777
Q ss_pred CcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchh
Q 008394 497 LEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 497 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
|++|++++|++.+.+|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|+.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 77777777776665555433 57788888777554 6777677888888888888888888776
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=4.5e-19 Score=184.06 Aligned_cols=211 Identities=17% Similarity=0.089 Sum_probs=153.4
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
++|++|++++|...+. + .+. .+++|++|++++|.++.+| ...+++|++|++++|.+..++
T Consensus 42 ~~L~~L~Ls~n~l~~~-----~-------~l~-----~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-----T-------GIE-----KLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCC-----T-------TGG-----GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--
T ss_pred CCCCEEEccCCCcccC-----h-------hhc-----ccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--
Confidence 8899999998864321 1 122 3458888888888888876 445788888888888888774
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCC
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSN 473 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 473 (567)
+. ++++|++|++++|+... . .+..+++|++|++++|.+.+ ++ ++.+++|++|++++|...+.++.....+
T Consensus 102 ~~-~l~~L~~L~L~~N~l~~--l----~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~ 171 (457)
T 3bz5_A 102 VT-PLTKLTYLNCDTNKLTK--L----DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQ 171 (457)
T ss_dssp CT-TCTTCCEEECCSSCCSC--C----CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTT
T ss_pred cC-CCCcCCEEECCCCcCCe--e----cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCc
Confidence 33 78888888888886432 1 26778888888888887444 43 7778888888888887666665444458
Q ss_pred CceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccc
Q 008394 474 TSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 553 (567)
|++|++++|.++.+| +..+++|+.|++++|.+.+. .++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|
T Consensus 172 L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 888888888888776 67778888888888775543 26777888888888876665 55 677788888888888
Q ss_pred cccccchhh
Q 008394 554 ILREYQKAS 562 (567)
Q Consensus 554 ~l~~~p~~~ 562 (567)
.++++|...
T Consensus 244 ~l~~~~~~~ 252 (457)
T 3bz5_A 244 PLTELDVST 252 (457)
T ss_dssp CCSCCCCTT
T ss_pred cCCCcCHHH
Confidence 777776433
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=3.1e-19 Score=186.47 Aligned_cols=129 Identities=23% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecC
Q 008394 424 HLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLS 503 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 503 (567)
.+++|++|++++|. +..++ .+..+++|++|++++|......+.....+|++|++++|.++.+|. +..+++|++|+++
T Consensus 219 ~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 219 ILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELN 295 (466)
T ss_dssp GCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred ccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence 34444444444443 22222 244455555555555443332222222355666666665555544 5556666666666
Q ss_pred CCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccc
Q 008394 504 DCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
+|++.+ ++. +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++++
T Consensus 296 ~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 296 ENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp SSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence 655433 222 5566666666666665554433 456666666666666666553
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=3.2e-19 Score=191.51 Aligned_cols=257 Identities=18% Similarity=0.175 Sum_probs=195.4
Q ss_pred EEEEEeecC-cccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccc---------cCccccCCCCCCCe
Q 008394 286 LWVITLEYS-SIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENK---------CKVSYLEDPRFTEV 355 (567)
Q Consensus 286 ~~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~---------~~l~~~~~~~~~~L 355 (567)
++.+.+... ......+..|.. + ++++.|++.+|.... ++..+.+. +.+..+|...+++|
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~--l----~~L~~L~l~~~~l~~-----l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNC--L----TNVSSFSLVSVTIER-----VKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGG--G----TTCSEEEEESCEECS-----CCBCCSCCCCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhhhhhhcchhhhhhchhhhcC--c----CcccEEEecCccchh-----hhhhhccCCccEEeeccCcccccCccccccc
Confidence 444445444 333444555666 6 778888887764321 22211111 23334444566788
Q ss_pred eEEeeCCCCCCCCCCCCCCCCceEEEccCCccccc---chhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 356 KYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQL---WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 356 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
+.|++.+|.+........+++|++|++++|.+... +..+. .+++|++|++++|.... . +..+..+++|++|+
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~--~--~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT--M--SSNFLGLEQLEHLD 402 (570)
T ss_dssp CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEE--E--EEEEETCTTCCEEE
T ss_pred CEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccc--c--cccccccCCCCEEE
Confidence 88888888766554445688999999999999876 34444 89999999999997543 1 22377899999999
Q ss_pred cCCCccCCccC-CcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCc--ccChhhhccCCCcEEecCCCcc
Q 008394 433 LRGSKSLKSLP-AGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIE--ELPSSIELLLRLEYLDLSDCKR 507 (567)
Q Consensus 433 l~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~ 507 (567)
+++|.+.+..| ..+..+++|++|++++|......|.... .+|++|++++|.++ .+|..+..+++|++|++++|++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 99998666555 4688899999999999987776666554 39999999999987 5898999999999999999998
Q ss_pred CccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccccc
Q 008394 508 LKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREY 558 (567)
Q Consensus 508 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~ 558 (567)
.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++.-
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 888888999999999999999988877777789999999999999988653
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.5e-19 Score=187.99 Aligned_cols=229 Identities=22% Similarity=0.154 Sum_probs=143.8
Q ss_pred eEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCC
Q 008394 285 LLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYP 364 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~ 364 (567)
.++.+.++.+.+..++. . + ++|++|++++|.+ ..+|. .+++|++|++++|.
T Consensus 62 ~L~~L~L~~N~l~~lp~----~--l----~~L~~L~Ls~N~l------------------~~lp~-~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA----L--P----PELRTLEVSGNQL------------------TSLPV-LPPGLLELSIFSNP 112 (622)
T ss_dssp TCSEEEECSCCCSCCCC----C--C----TTCCEEEECSCCC------------------SCCCC-CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCCCCCCC----c--C----CCCCEEEcCCCcC------------------CcCCC-CCCCCCEEECcCCc
Confidence 45566666666655543 2 3 5677777766632 22222 33466666666666
Q ss_pred CCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCC--------------CCCcCCcE
Q 008394 365 LKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLI--------------PHLNKLVI 430 (567)
Q Consensus 365 ~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--------------~~l~~L~~ 430 (567)
++.+|. .+++|+.|++++|++..+|.. +++|++|++++|.... ....+..+ ..+++|++
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~ 185 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQE 185 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcE
Confidence 666555 345566666666666555542 3556666666654321 00111111 12356666
Q ss_pred EecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCcc
Q 008394 431 LNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 431 L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 510 (567)
|++++|. +..+|. .+++|+.|++++|.. ..+|.. ..+|++|++++|.++.+| ..+++|++|++++|.+. .
T Consensus 186 L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l-~~l~~~-~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~ 255 (622)
T 3g06_A 186 LSVSDNQ-LASLPT---LPSELYKLWAYNNRL-TSLPAL-PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-S 255 (622)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSSCC-SSCCCC-CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-C
T ss_pred EECCCCC-CCCCCC---ccchhhEEECcCCcc-cccCCC-CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-c
Confidence 6666666 334544 235667777766543 344432 357888888888888887 45688999999998754 5
Q ss_pred CcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 511 LPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 511 ~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.++..+
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 766 6789999999998766 788889999999999999999887655543
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=9e-20 Score=191.02 Aligned_cols=214 Identities=14% Similarity=0.012 Sum_probs=176.7
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
++|++|++++|.+.... +. .+ ..+++|++|++++|.++.++....+++|++|++++|.+..++.
T Consensus 34 ~~L~~L~Ls~n~l~~~~----~~------~~-----~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS----AA------DL-----APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp GGCCEEECCSSCCCCCC----GG------GG-----TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-
T ss_pred CCccEEEeeCCcCCCCC----HH------HH-----hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-
Confidence 58999999998643321 11 22 2456999999999999877665568999999999999998874
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS-- 471 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-- 471 (567)
.++|++|++++|.... . + ...+++|++|++++|.+.+..|..++.+++|++|++++|...+..|....
T Consensus 98 ----~~~L~~L~L~~N~l~~-~-~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 98 ----GPSIETLHAANNNISR-V-S----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp ----CTTCCEEECCSSCCCC-E-E----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ----CCCcCEEECcCCcCCC-C-C----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 4899999999997643 1 1 13468999999999997777788899999999999999987776666553
Q ss_pred -CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecc
Q 008394 472 -SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLL 550 (567)
Q Consensus 472 -~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 550 (567)
.+|++|++++|.++.+|. ...+++|++|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred CCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 499999999999998864 3469999999999998665 5556999999999999998876 58888999999999999
Q ss_pred cccccc
Q 008394 551 EKPILR 556 (567)
Q Consensus 551 ~~~~l~ 556 (567)
++|.+.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 999987
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=6.4e-19 Score=170.72 Aligned_cols=202 Identities=21% Similarity=0.146 Sum_probs=163.4
Q ss_pred CCeeEEeeCCCCCCCCCCC-C-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 353 TEVKYLHWHGYPLKSMPSN-I-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
++|++|++++|.++.++.. + .+++|++|++++|.+..++...+.++++|++|++++|.... ..+..+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS---LALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc---cChhhhcCCccccE
Confidence 5899999999999988753 3 47899999999999999988777689999999999997643 23456889999999
Q ss_pred EecCCCccCCccCCcccCCCCCcEEEcCCCCCCC-cCCcccc--CCCceeeccCccCcccC-hhhhccCCCc----EEec
Q 008394 431 LNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLK-RLPEISS--SNTSCLFLSGTAIEELP-SSIELLLRLE----YLDL 502 (567)
Q Consensus 431 L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~-~~~~~~~--~~L~~L~l~~~~i~~lp-~~~~~l~~L~----~L~l 502 (567)
|++++|.+....+..+..+++|++|++++|.... .+|.... .+|++|++++|.++.++ ..+..+.+|+ +|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9999998655555578899999999999987655 3565554 39999999999999876 4577777777 8999
Q ss_pred CCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccccc
Q 008394 503 SDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREY 558 (567)
Q Consensus 503 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~ 558 (567)
++|.+.. +|.......+|+.|++++|.+....+..+..+++|+.|++++|.+..-
T Consensus 185 s~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 185 SLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCCcccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 9998654 444444556899999999887655455578999999999999988653
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2.5e-18 Score=178.40 Aligned_cols=244 Identities=18% Similarity=0.152 Sum_probs=117.0
Q ss_pred eEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCcccccccccccc----ccCccccCCCCCCCeeEEee
Q 008394 285 LLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLEN----KCKVSYLEDPRFTEVKYLHW 360 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~----~~~l~~~~~~~~~~L~~L~l 360 (567)
.++.+.++.+.+..++ .|.. + ++|++|++++|...... ..-...|.. -+.+..++...+++|++|++
T Consensus 43 ~L~~L~Ls~n~l~~~~--~l~~--l----~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L 113 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT--GIEK--L----TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC 113 (457)
T ss_dssp TCCEEECCSSCCCCCT--TGGG--C----TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred CCCEEEccCCCcccCh--hhcc--c----CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceeecCCCCcCCEEEC
Confidence 4566777777776653 3555 5 77788877776432210 000000000 00111222233344444444
Q ss_pred CCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCC
Q 008394 361 HGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLK 440 (567)
Q Consensus 361 ~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 440 (567)
++|.++.+| ...+++|++|++++|.++.++ +. ++++|++|++++|.... .. .+..+++|++|++++|. +.
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~-~l~~L~~L~l~~n~~~~-~~----~~~~l~~L~~L~ls~n~-l~ 183 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VS-HNTQLTELDCHLNKKIT-KL----DVTPQTQLTTLDCSFNK-IT 183 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CT-TCTTCCEEECTTCSCCC-CC----CCTTCTTCCEEECCSSC-CC
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cc-cCCcCCEEECCCCCccc-cc----ccccCCcCCEEECCCCc-cc
Confidence 444444443 222444444444444444432 22 44445555554443222 11 23445555555555555 23
Q ss_pred ccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCC-
Q 008394 441 SLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLK- 519 (567)
Q Consensus 441 ~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~- 519 (567)
.+| +..+++|+.|++++|.... ++.....+|++|++++|.++.+| ++.+++|++|++++|++.+..+..+.++.
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~-~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~ 258 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTT 258 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCE
T ss_pred eec--cccCCCCCEEECcCCcCCe-eccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCE
Confidence 343 4555555555555544322 23222236666666666666655 55666666666666654443222233222
Q ss_pred ------CCcEEeccCCCCCcccCcccCCCCCcceecccccc
Q 008394 520 ------SLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPI 554 (567)
Q Consensus 520 ------~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 554 (567)
+|+.|++++|...+.+| ++.+++|+.|++++|.
T Consensus 259 L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 259 LHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred EeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 33444444554444444 3456777777777774
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=6.6e-19 Score=170.15 Aligned_cols=192 Identities=16% Similarity=0.072 Sum_probs=123.0
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
++|+.|.+.++.+..++....+++|++|++++|.+..++ .+. ++++|++|++++|.... ..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~-~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALK-ELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGT-TCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhc-CCCCCCEEECCCCccCc---cChhHhcCCcCCCEEE
Confidence 367777777777776666555677777777777776653 333 67777777777775421 2233456677777777
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc--cCCCceeeccCccCcccChh-hhccCCCcEEecCCCccCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS--SSNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~--~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~ 509 (567)
+++|.+.+..+..+..+++|++|++++|......+... ..+|++|++++|.++.+|.. +..+++|++|++++|++.+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 77777444444446667777777777765443333222 23777777777777766544 5677777777777777666
Q ss_pred cCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccc
Q 008394 510 SLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 510 ~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
..|..+..+++|+.|++++|+.. +.+++|+.|++..|.++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTG
T ss_pred cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCC
Confidence 55555677777777777777544 23456667776666554
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=4.8e-19 Score=192.53 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCceeeccCccCc--ccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecc
Q 008394 473 NTSCLFLSGTAIE--ELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLL 550 (567)
Q Consensus 473 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 550 (567)
+++.|++++|.+. ..|..+..+++|++|++++|++.+..|..|.++++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 4566666666533 24566777788888888888777666777888888888888887776666666778888888888
Q ss_pred ccccccccchhhh
Q 008394 551 EKPILREYQKASS 563 (567)
Q Consensus 551 ~~~~l~~~p~~~~ 563 (567)
++|.++.+++..+
T Consensus 550 s~N~l~~~~~~~l 562 (635)
T 4g8a_A 550 SLNHIMTSKKQEL 562 (635)
T ss_dssp TTSCCCBCCSSCT
T ss_pred CCCcCCCCCHHHH
Confidence 8888877766544
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=195.14 Aligned_cols=206 Identities=16% Similarity=0.078 Sum_probs=132.9
Q ss_pred CCCCeeEEeeCCCCCCCCCC--C-CCCCCceEEEccCCcccccchhhhhhc--cCCcEEecccCccccccCCCCCCCCCC
Q 008394 351 RFTEVKYLHWHGYPLKSMPS--N-ICAEQLVFLEVPNSSIEQLWDGMKQHR--GKLNQIIHATCKMLIAKTPNPTLIPHL 425 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~n~i~~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~l 425 (567)
.+++|++|++++|.+..++. . ..+++|++|++++|.+..+....+..+ ++|+.|++++|.... ..+..+..+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~---~~~~~~~~~ 197 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS---RVSVDWGKC 197 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC---CCCCCCCSS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc---ccccchhhc
Confidence 44577777777777666532 1 236677777777777665544433344 566666666665422 122233333
Q ss_pred cC------CcEEecCCCccCCccCCcccC--------------------------------------CCCCcEEEcCCCC
Q 008394 426 NK------LVILNLRGSKSLKSLPAGIFN--------------------------------------LEFLTTLDLSGCP 461 (567)
Q Consensus 426 ~~------L~~L~l~~~~~~~~~p~~l~~--------------------------------------l~~L~~L~Ls~~~ 461 (567)
++ |++|++++|.+....|..+.. .++|+.|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 33 888888887654444332221 2568888888876
Q ss_pred CCCcCCcccc--CCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcc
Q 008394 462 KLKRLPEISS--SNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPEC 538 (567)
Q Consensus 462 ~~~~~~~~~~--~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~ 538 (567)
.....+.... .+|+.|++++|.++.+ |..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 5554444433 2788888888888766 445778888888888888776666777888888888888887765555556
Q ss_pred cCCCCCcceeccccccccccc
Q 008394 539 LGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 539 l~~l~~L~~L~l~~~~l~~~p 559 (567)
+..+++|+.|++++|.++.++
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCCS
T ss_pred hcCCCCCCEEECCCCCCCccc
Confidence 777888888888887776654
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.1e-18 Score=169.08 Aligned_cols=203 Identities=18% Similarity=0.078 Sum_probs=164.3
Q ss_pred EEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCC
Q 008394 357 YLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGS 436 (567)
Q Consensus 357 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 436 (567)
..++.+..+..+|..+ .++|++|++++|.+..++...+.++++|++|++++|.... ..+..+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc---cCHHHccCCcCCCEEECCCC
Confidence 4667777788888755 4689999999999999988666699999999999997533 22346788999999999999
Q ss_pred ccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcc--cChhhhccCCCcEEecCCCccCccCc
Q 008394 437 KSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEE--LPSSIELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 437 ~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p 512 (567)
.+.+..|..+..+++|++|++++|......+.... .+|++|++++|.++. +|..+..+++|++|++++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 96666667899999999999999876554442332 499999999999986 68899999999999999999777666
Q ss_pred ccccCCCCCc----EEeccCCCCCcccCcccCCCCCcceeccccccccccchhhhh
Q 008394 513 SSLCKLKSLE----ILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASSK 564 (567)
Q Consensus 513 ~~~~~l~~L~----~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~~ 564 (567)
..+..+++|+ .|++++|.+....+. .....+|+.|++++|.++++|+..+.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhc
Confidence 6677666666 899999887654444 44455899999999999999987653
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=7.8e-20 Score=195.34 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=94.3
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
..++.+.++.+.+..+.+..|.+ + ++|++|++++|.+.... +. . +..+++|++|++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~--l----~~L~~L~Ls~n~i~~~~----~~------~-----~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRA--C----ANLQVLILKSSRINTIE----GD------A-----FYSLGSLEHLDLSDN 84 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSS--C----TTCCEEECTTSCCCEEC----TT------T-----TTTCTTCCEEECTTS
T ss_pred CCccEEECcCCccCccChhhhhc--C----CcccEEECCCCCcCccC----hh------h-----ccccccCCEEECCCC
Confidence 46778888888888887777877 7 88999999887543221 11 1 223457888888888
Q ss_pred CCCCCCCC--CCCCCceEEEccCCccccc--chhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccC
Q 008394 364 PLKSMPSN--ICAEQLVFLEVPNSSIEQL--WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSL 439 (567)
Q Consensus 364 ~~~~l~~~--~~~~~L~~L~l~~n~i~~l--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 439 (567)
.+..++.. ..+++|++|++++|.+..+ +..+. ++++|++|++++|.... .. .+..+..+++|++|++++|.+.
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~-~~-~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFS-EI-RRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCC-EE-CTTTTTTCCEEEEEEEEETTCC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCcccc-cc-CHhhhhcccccCeeeccCCccc
Confidence 77777653 3467788888888877754 33333 77788888888776332 11 1235667777777777777765
Q ss_pred CccCCcccC
Q 008394 440 KSLPAGIFN 448 (567)
Q Consensus 440 ~~~p~~l~~ 448 (567)
+..|..+..
T Consensus 162 ~~~~~~l~~ 170 (549)
T 2z81_A 162 NYQSQSLKS 170 (549)
T ss_dssp EECTTTTTT
T ss_pred ccChhhhhc
Confidence 555655543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.1e-18 Score=165.26 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=148.9
Q ss_pred CCeeEEeeCCCCCCCCCCC-C-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 353 TEVKYLHWHGYPLKSMPSN-I-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
.+++.|++++|.+..++.. + .+++|++|++++|.+..++...+.++++|++|++++|.... ..+..+..+++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA---LPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC---CCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc---CCHhHcccccCCCE
Confidence 6899999999999998863 3 48999999999999999999988789999999999997532 23456788999999
Q ss_pred EecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCCCcc
Q 008394 431 LNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKR 507 (567)
Q Consensus 431 L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 507 (567)
|++++|.+....|..+..+++|++|++++|......+.... .+|++|++++|.++.+|.. +..+++|++|++++|++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 99999996665666788999999999999865443333232 4999999999999988764 88999999999999987
Q ss_pred CccCcccccCCCCCcEEeccCCCCCc
Q 008394 508 LKSLPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 508 ~~~~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
....+..+..+++|+.|++++|+...
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCHHHhccccCCCEEEecCCCeeC
Confidence 65555568999999999999988653
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=191.73 Aligned_cols=211 Identities=19% Similarity=0.123 Sum_probs=151.0
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhh-------------------hhccCCcEEecccCcc
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMK-------------------QHRGKLNQIIHATCKM 411 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~-------------------~~l~~L~~L~l~~~~~ 411 (567)
.+++|+.|++.+|.+..+|......+|+.|++++|.+..++.... ..+++|++|++++|..
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred CcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence 345777777777777777765542277777777777666554210 2455566666665543
Q ss_pred ccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCc-cc--cCCCceeeccCccCcc-c
Q 008394 412 LIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPE-IS--SSNTSCLFLSGTAIEE-L 487 (567)
Q Consensus 412 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~-~~--~~~L~~L~l~~~~i~~-l 487 (567)
.. ....+..+..+++|++|++++|. ...+|..+..+++|++|++++|......+. .. ..+|++|++++|.+.. .
T Consensus 360 ~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 360 SF-KGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp BE-EEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred Cc-cccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 21 00001234456777777777776 334444477788888888888765544442 22 2389999999999885 4
Q ss_pred ChhhhccCCCcEEecCCCccC-ccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 488 PSSIELLLRLEYLDLSDCKRL-KSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 488 p~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++++|+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 667899999999999999876 5788889999999999999999888878899999999999999999999987654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=3e-19 Score=176.24 Aligned_cols=198 Identities=19% Similarity=0.169 Sum_probs=160.3
Q ss_pred CCCeeEEeeCCCCCC-CCCCCC---CCCCceEEEccCCcccccchhhhhhc-----cCCcEEecccCccccccCCCCCCC
Q 008394 352 FTEVKYLHWHGYPLK-SMPSNI---CAEQLVFLEVPNSSIEQLWDGMKQHR-----GKLNQIIHATCKMLIAKTPNPTLI 422 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~-~l~~~~---~~~~L~~L~l~~n~i~~l~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~ 422 (567)
+++|++|++++|.++ .+|... .+++|++|++++|++..+|..+. .+ ++|++|++++|+... ..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~l~~~~~~~L~~L~L~~N~l~~---~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA-ELQQWLKPGLKVLSIAQAHSLN---FSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH-HHHTTCCTTCCEEEEESCSCCC---CCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH-HHHHhhcCCCcEEEeeCCCCcc---chHHHh
Confidence 469999999999987 567653 48999999999999999865554 66 999999999998632 334678
Q ss_pred CCCcCCcEEecCCCccCCc--cCCcc--cCCCCCcEEEcCCCCCCC--cCCccc---cCCCceeeccCccCcccC--hhh
Q 008394 423 PHLNKLVILNLRGSKSLKS--LPAGI--FNLEFLTTLDLSGCPKLK--RLPEIS---SSNTSCLFLSGTAIEELP--SSI 491 (567)
Q Consensus 423 ~~l~~L~~L~l~~~~~~~~--~p~~l--~~l~~L~~L~Ls~~~~~~--~~~~~~---~~~L~~L~l~~~~i~~lp--~~~ 491 (567)
..+++|++|++++|.+.+. +|..+ ..+++|++|++++|.... .++... ..+|++|++++|.++..+ ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 8999999999999986654 34344 789999999999986542 222222 249999999999999765 456
Q ss_pred hccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccccccccc
Q 008394 492 ELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREY 558 (567)
Q Consensus 492 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~ 558 (567)
..+++|++|++++|.+. .+|..+. ++|+.|++++|.+.+. |. +..+++|+.|++++|.+++.
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 77899999999999866 7888776 8999999999887654 66 89999999999999998763
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=3.8e-18 Score=162.79 Aligned_cols=177 Identities=19% Similarity=0.154 Sum_probs=136.4
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
+.+.++++++.++.+|..+. ++++.|++++|.+..++...+.++++|++|++++|.... ..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT---LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc---cCHhHhccCCcCCEEEC
Confidence 56789999999999997664 789999999999999888776689999999999987532 33455788999999999
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc--cCCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCcc
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS--SSNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~--~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~ 510 (567)
++|.+....+..+..+++|++|++++|......+... ..+|++|++++|.++.+|. .+..+++|++|++++|++...
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9998655555667889999999999975443333222 2378888888888887766 477788888888888876655
Q ss_pred CcccccCCCCCcEEeccCCCCCcc
Q 008394 511 LPSSLCKLKSLEILDLSGCSNLQR 534 (567)
Q Consensus 511 ~p~~~~~l~~L~~L~l~~~~~~~~ 534 (567)
.+..+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555677888888888888776554
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=5.9e-19 Score=188.52 Aligned_cols=138 Identities=11% Similarity=0.118 Sum_probs=110.2
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCC-C-CCCCceEEEccCCcccccc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSN-I-CAEQLVFLEVPNSSIEQLW 391 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~n~i~~l~ 391 (567)
+++++|++++|...... +. . +..+++|++|++++|.++.++.. + .+++|++|++++|.+..++
T Consensus 26 ~~L~~L~Ls~n~l~~~~----~~------~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG----HG------D-----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TTCCEEECCSSCCCEEC----SS------T-----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCccEEECcCCccCccC----hh------h-----hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 46999999998643221 11 2 23456999999999999988753 3 4899999999999999999
Q ss_pred hhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccC-CcccCCCCCcEEEcCCCCCCCcCCc
Q 008394 392 DGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLP-AGIFNLEFLTTLDLSGCPKLKRLPE 468 (567)
Q Consensus 392 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~~~~~~ 468 (567)
...+.++++|++|++++|... ....+..+..+++|++|++++|...+.+| ..+..+++|++|++++|...+..|.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQ--TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCS--SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred HHHhccCCCCcEEECCCCccc--ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 886669999999999999754 23345678899999999999998777776 5789999999999999876654443
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1e-17 Score=179.21 Aligned_cols=223 Identities=23% Similarity=0.179 Sum_probs=165.0
Q ss_pred EEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCC
Q 008394 286 LWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPL 365 (567)
Q Consensus 286 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~ 365 (567)
+..+.++.+.+..++...+ ++|+.|++++|.+ ..+|. .+++|++|++++|.+
T Consensus 42 l~~L~ls~n~L~~lp~~l~---------~~L~~L~L~~N~l------------------~~lp~-~l~~L~~L~Ls~N~l 93 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP---------AHITTLVIPDNNL------------------TSLPA-LPPELRTLEVSGNQL 93 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC---------TTCSEEEECSCCC------------------SCCCC-CCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcCccChhhC---------CCCcEEEecCCCC------------------CCCCC-cCCCCCEEEcCCCcC
Confidence 5678888888887765443 4699999998842 33332 357999999999999
Q ss_pred CCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCc
Q 008394 366 KSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAG 445 (567)
Q Consensus 366 ~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 445 (567)
+.+|. .+++|++|++++|.+..++. .+++|++|++++|.... .+ ..+++|++|++++|. +..+|..
T Consensus 94 ~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~--lp-----~~l~~L~~L~Ls~N~-l~~l~~~ 159 (622)
T 3g06_A 94 TSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS--LP-----VLPPGLQELSVSDNQ-LASLPAL 159 (622)
T ss_dssp SCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC--CC-----CCCTTCCEEECCSSC-CSCCCCC
T ss_pred CcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc--CC-----CCCCCCCEEECcCCc-CCCcCCc
Confidence 99998 67999999999999999887 57899999999997532 22 135889999999987 4445542
Q ss_pred c---cCC--------------CCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccC
Q 008394 446 I---FNL--------------EFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRL 508 (567)
Q Consensus 446 l---~~l--------------~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 508 (567)
+ ..+ ++|+.|++++|... .+|.. ..+|+.|++++|.++.+|.. +++|++|++++|.+.
T Consensus 160 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~~-~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT 234 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC-CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS
T ss_pred cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCCc-cchhhEEECcCCcccccCCC---CCCCCEEEccCCccC
Confidence 2 222 56666666665432 34332 24677777777777766643 478899999988754
Q ss_pred ccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 509 KSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 509 ~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
.+| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.|+.+|+...
T Consensus 235 -~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~ 281 (622)
T 3g06_A 235 -SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLI 281 (622)
T ss_dssp -CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGG
T ss_pred -cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHh
Confidence 466 46689999999998665 5666 57889999999999999987654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=3e-18 Score=165.57 Aligned_cols=199 Identities=17% Similarity=0.080 Sum_probs=162.2
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
.+..+.+.++.+..+.....+++|+.|++++|.+..++. +. .+++|++|++++|.... ...+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~-~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQ-YLPNVRYLALGGNKLHD-----ISALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT-GG-GCTTCCEEECTTSCCCC-----CGGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc-cc-cCCCCcEEECCCCCCCC-----chhhcCCCCCCEEEC
Confidence 455556666666655555568899999999999998764 44 79999999999997432 346789999999999
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCCCccCcc
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~ 510 (567)
++|.+.+..+..+..+++|++|++++|......+.... .+|++|++++|.++.+|.. +..+++|++|++++|.+.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99996655556678999999999999876654444333 4999999999999988765 68999999999999997766
Q ss_pred CcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccc
Q 008394 511 LPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 511 ~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
.+..++++++|+.|++++|.+.+..|..+..+++|+.|++++|.+....
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 6666899999999999999988777777899999999999999876543
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=2.8e-18 Score=162.39 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=124.4
Q ss_pred CCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCc-ccccchhhhhhccCCcEEeccc-CccccccCCCCCCCCCCcCC
Q 008394 353 TEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSS-IEQLWDGMKQHRGKLNQIIHAT-CKMLIAKTPNPTLIPHLNKL 428 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~-i~~l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L 428 (567)
.+|++|++++|.++.+|... .+++|++|++++|. +..++...+.++++|++|++++ |.... ..+..+..+++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---IDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---ECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---cCHHHhCCCCCC
Confidence 47778888888777776632 36778888888875 7777776665777888888877 54321 123456677778
Q ss_pred cEEecCCCccCCccCCcccCCCCCc---EEEcCCCCCCCcCCcccc---CCCc-eeeccCccCcccChhhhccCCCcEEe
Q 008394 429 VILNLRGSKSLKSLPAGIFNLEFLT---TLDLSGCPKLKRLPEISS---SNTS-CLFLSGTAIEELPSSIELLLRLEYLD 501 (567)
Q Consensus 429 ~~L~l~~~~~~~~~p~~l~~l~~L~---~L~Ls~~~~~~~~~~~~~---~~L~-~L~l~~~~i~~lp~~~~~l~~L~~L~ 501 (567)
++|++++|. +..+|. +..+++|+ +|++++|+.+..+|.... .+|+ +|++++|+++.+|......++|++|+
T Consensus 108 ~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp CEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred CEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence 888887777 444665 66677776 777777644444443222 2666 77777777777766544446777777
Q ss_pred cCCCc-cCccCcccccCC-CCCcEEeccCCCCCcccCcccCCCCCcceeccccc
Q 008394 502 LSDCK-RLKSLPSSLCKL-KSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 502 l~~~~-~~~~~p~~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 553 (567)
+++|+ +....+..|..+ ++|+.|++++|.+. .+|.. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 77774 333333456666 77777777776554 44443 5666777776665
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=3.9e-18 Score=161.44 Aligned_cols=193 Identities=13% Similarity=0.162 Sum_probs=155.9
Q ss_pred CCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCC-CccCCccC
Q 008394 365 LKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRG-SKSLKSLP 443 (567)
Q Consensus 365 ~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~p 443 (567)
++.+|. ..++|++|++++|+++.++...+.++++|++|++++|+.+. . ..+..+..+++|++|++++ |. +..+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~-i~~~~f~~l~~L~~L~l~~~n~-l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-Q-LESHSFYNLSKVTHIEIRNTRN-LTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-E-ECTTTEESCTTCCEEEEEEETT-CCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-e-eCHhHcCCCcCCcEEECCCCCC-eeEcC
Confidence 778887 45689999999999999999777799999999999996332 1 2234678999999999998 66 55555
Q ss_pred -CcccCCCCCcEEEcCCCCCCCcCCcccc-CCCc---eeeccCc-cCcccChh-hhccCCCc-EEecCCCccCccCcccc
Q 008394 444 -AGIFNLEFLTTLDLSGCPKLKRLPEISS-SNTS---CLFLSGT-AIEELPSS-IELLLRLE-YLDLSDCKRLKSLPSSL 515 (567)
Q Consensus 444 -~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~~~~~p~~~ 515 (567)
..+..+++|++|++++|.... +|.... .+|+ +|++++| .++.+|.. +..+++|+ +|++++|.+. .+|...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 678899999999999986544 666222 2777 9999999 99998864 89999999 9999999866 666654
Q ss_pred cCCCCCcEEeccCCCCCccc-CcccCCC-CCcceeccccccccccchhhhh
Q 008394 516 CKLKSLEILDLSGCSNLQRL-PECLGQL-SSLGTLLLEKPILREYQKASSK 564 (567)
Q Consensus 516 ~~l~~L~~L~l~~~~~~~~~-p~~l~~l-~~L~~L~l~~~~l~~~p~~~~~ 564 (567)
...++|+.|++++|.....+ +..+..+ ++|+.|++++|.++.+|+..+.
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~ 226 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence 44489999999999634445 4668889 9999999999999999987543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=9.8e-18 Score=163.28 Aligned_cols=194 Identities=18% Similarity=0.145 Sum_probs=157.6
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCC--CCCCCceEEEccCCcccccc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSN--ICAEQLVFLEVPNSSIEQLW 391 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~n~i~~l~ 391 (567)
.+++.+++.+++ +..+|..-.++++.|++++|.+..++.. ..+++|++|++++|.+..++
T Consensus 10 ~~l~~l~~~~~~------------------l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 10 ASHLEVNCDKRN------------------LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp TTCCEEECTTSC------------------CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred CCccEEECCCCC------------------CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence 788888887763 3334433336999999999999887542 34899999999999999987
Q ss_pred hhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc
Q 008394 392 DGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS 471 (567)
Q Consensus 392 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 471 (567)
.. ..+++|++|++++|.... .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|......+....
T Consensus 72 ~~--~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 72 VD--GTLPVLGTLDLSHNQLQS----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CC--SCCTTCCEEECCSSCCSS----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CC--CCCCcCCEEECCCCcCCc----CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 76 379999999999997542 345678899999999999995555557789999999999999865544343333
Q ss_pred --CCCceeeccCccCcccChh-hhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCC
Q 008394 472 --SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNL 532 (567)
Q Consensus 472 --~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 532 (567)
.+|+.|++++|.++.+|.. +..+++|++|++++|++. .+|..+..+++|+.|++++|+..
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 3999999999999999875 688999999999999854 78888889999999999998865
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=5.3e-17 Score=168.32 Aligned_cols=243 Identities=23% Similarity=0.181 Sum_probs=135.6
Q ss_pred ceEEEEEeecCcccccChhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccc----cCccccC-CCCCCCeeEE
Q 008394 284 NLLWVITLEYSSIYKLDMDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENK----CKVSYLE-DPRFTEVKYL 358 (567)
Q Consensus 284 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~----~~l~~~~-~~~~~~L~~L 358 (567)
..++.+.++.+.+..++ .|.+ + ++|++|++++|...... ..+.+++.+ +.+..+| ...+++|++|
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~--l----~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQN--S----SFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEELPELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTT--C----TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCc--ccCC--C----CCCCEEECCCCcCcccC--CCcccccEEECcCCcCCcCccccCCCCCCEE
Confidence 45777888888887765 3666 6 88888888887643311 111111100 1222222 3345566666
Q ss_pred eeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCcc
Q 008394 359 HWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKS 438 (567)
Q Consensus 359 ~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 438 (567)
++++|.++.+|... .+|++|++++|.+..+|. +. ++++|++|++++|+... .+ ..+++|++|++++|.
T Consensus 201 ~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~l~~N~l~~--l~-----~~~~~L~~L~l~~N~- 268 (454)
T 1jl5_A 201 YADNNSLKKLPDLP--LSLESIVAGNNILEELPE-LQ-NLPFLTTIYADNNLLKT--LP-----DLPPSLEALNVRDNY- 268 (454)
T ss_dssp ECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCC-CT-TCTTCCEEECCSSCCSS--CC-----SCCTTCCEEECCSSC-
T ss_pred ECCCCcCCcCCCCc--CcccEEECcCCcCCcccc-cC-CCCCCCEEECCCCcCCc--cc-----ccccccCEEECCCCc-
Confidence 66666666655432 467777777777766663 33 67777777777765421 11 123566666666665
Q ss_pred CCccCCcccCCCCCcEEEcCCCCCCC--cCCc----------------cccCCCceeeccCccCcccChhhhccCCCcEE
Q 008394 439 LKSLPAGIFNLEFLTTLDLSGCPKLK--RLPE----------------ISSSNTSCLFLSGTAIEELPSSIELLLRLEYL 500 (567)
Q Consensus 439 ~~~~p~~l~~l~~L~~L~Ls~~~~~~--~~~~----------------~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 500 (567)
+..+|.. +++|++|++++|...+ .+|. ....+|++|++++|.++.+|.. +++|++|
T Consensus 269 l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L 342 (454)
T 1jl5_A 269 LTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERL 342 (454)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred ccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEE
Confidence 3334432 2556666666654332 1110 0113667777777777766654 4778888
Q ss_pred ecCCCccCccCcccccCCCCCcEEeccCCCCCc--ccCcccCCC-------------CCcceecccccccccc
Q 008394 501 DLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ--RLPECLGQL-------------SSLGTLLLEKPILREY 558 (567)
Q Consensus 501 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l-------------~~L~~L~l~~~~l~~~ 558 (567)
++++|.+. .+|. .+++|+.|++++|.+.+ .+|.+++.+ ++|+.|++++|.++++
T Consensus 343 ~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 343 IASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp ECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred ECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 88887754 5666 46889999999988877 778877777 7899999999988754
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.1e-16 Score=165.80 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=70.2
Q ss_pred CCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 350 PRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 350 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
..+++|++|++++|.++.+|... .+|++|++++|.+..++ .+. ++++|++|++++|.... .+. ..++|+
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~-~l~~L~~L~l~~N~l~~--l~~-----~~~~L~ 218 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQ-NLPFLTAIYADNNSLKK--LPD-----LPLSLE 218 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCT-TCTTCCEEECCSSCCSS--CCC-----CCTTCC
T ss_pred CCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-ccc-CCCCCCEEECCCCcCCc--CCC-----CcCccc
Confidence 34557777777777777666543 46777777777777765 333 67777777777765321 111 123666
Q ss_pred EEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccC
Q 008394 430 ILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELP 488 (567)
Q Consensus 430 ~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp 488 (567)
+|++++|. +..+|. +..+++|++|++++|... .+|.. ..+|++|++++|.++.+|
T Consensus 219 ~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~~-~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 219 SIVAGNNI-LEELPE-LQNLPFLTTIYADNNLLK-TLPDL-PPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp EEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-SCCSC-CTTCCEEECCSSCCSCCC
T ss_pred EEECcCCc-CCcccc-cCCCCCCCEEECCCCcCC-ccccc-ccccCEEECCCCcccccC
Confidence 66666665 335553 666666666666665432 23321 134444444444444443
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=2.4e-18 Score=169.76 Aligned_cols=202 Identities=17% Similarity=0.076 Sum_probs=155.5
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCC-C-----CCceEEEccCCcc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNIC-A-----EQLVFLEVPNSSI 387 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~-----~~L~~L~l~~n~i 387 (567)
.+|++|++++|...+. .|. .+ -...+++|++|++++|.++.+|..+. + ++|++|++++|++
T Consensus 95 ~~L~~L~L~~n~l~~~----~~~------~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 95 SGLQELTLENLEVTGT----APP------PL---LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp SCCCEEEEEEEBCBSC----CCC------CS---SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred CCccEEEccCCcccch----hHH------HH---HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 8899999999864322 111 11 01345699999999999998865432 3 8999999999999
Q ss_pred cccchhhhhhccCCcEEecccCccccccC--CCCCCCCCCcCCcEEecCCCccCC--ccC-CcccCCCCCcEEEcCCCCC
Q 008394 388 EQLWDGMKQHRGKLNQIIHATCKMLIAKT--PNPTLIPHLNKLVILNLRGSKSLK--SLP-AGIFNLEFLTTLDLSGCPK 462 (567)
Q Consensus 388 ~~l~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~--~~p-~~l~~l~~L~~L~Ls~~~~ 462 (567)
..++...+.++++|++|++++|+... .. +....+..+++|++|++++|.+.. .++ ..+..+++|++|++++|..
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred ccchHHHhccCCCCCEEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 99987666699999999999997432 11 111123788999999999998542 333 2345789999999999887
Q ss_pred CCcCCccc---cCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCc
Q 008394 463 LKRLPEIS---SSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 463 ~~~~~~~~---~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
....|... ..+|++|++++|.++.+|..+. ++|++|++++|++.+. |. +..+++|+.|++++|++.+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66554222 2499999999999999998876 8999999999986554 76 9999999999999988754
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.1e-19 Score=181.75 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=169.8
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCC------------CCCCCceEEE
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSN------------ICAEQLVFLE 381 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~------------~~~~~L~~L~ 381 (567)
++|++|++++|.+.......+.. .+. .+++|++|++++|.+..+... ..+++|++|+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~------~l~-----~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSE------NIA-----SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHH------TTT-----TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred CCccEEECCCCCCCHHHHHHHHH------HHH-----hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 88999999887654433222222 233 345899999999876654321 2468899999
Q ss_pred ccCCcccc-----cchhhhhhccCCcEEecccCccccccCC-CCCCCCCC---------cCCcEEecCCCccC-CccC--
Q 008394 382 VPNSSIEQ-----LWDGMKQHRGKLNQIIHATCKMLIAKTP-NPTLIPHL---------NKLVILNLRGSKSL-KSLP-- 443 (567)
Q Consensus 382 l~~n~i~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l---------~~L~~L~l~~~~~~-~~~p-- 443 (567)
+++|.+.. ++..+. ++++|++|++++|........ ....+..+ ++|++|++++|.+. ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 99998887 555555 899999999999875210000 00112223 89999999999855 3444
Q ss_pred -CcccCCCCCcEEEcCCCCCCC-----cCC-cc-ccCCCceeeccCccC-----cccChhhhccCCCcEEecCCCccCcc
Q 008394 444 -AGIFNLEFLTTLDLSGCPKLK-----RLP-EI-SSSNTSCLFLSGTAI-----EELPSSIELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 444 -~~l~~l~~L~~L~Ls~~~~~~-----~~~-~~-~~~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~~~~ 510 (567)
..+..+++|++|++++|.... ..| .. ...+|++|+|++|.+ ..+|..+..+++|++|++++|.+...
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 456678899999999986542 122 22 224899999999998 46788899999999999999997654
Q ss_pred ----Ccccc--cCCCCCcEEeccCCCCCc----ccCccc-CCCCCcceeccccccccccch
Q 008394 511 ----LPSSL--CKLKSLEILDLSGCSNLQ----RLPECL-GQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 511 ----~p~~~--~~l~~L~~L~l~~~~~~~----~~p~~l-~~l~~L~~L~l~~~~l~~~p~ 560 (567)
+|..+ +++++|+.|++++|.+.. .+|..+ .++++|+.|++++|.++..++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 56666 448999999999998877 477777 568999999999999987664
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2e-17 Score=162.64 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=153.6
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
++++.|++.++.... +..+. .+++|++|++++|.+..++....+++|++|++++|.+..++ .
T Consensus 41 ~~L~~L~l~~~~i~~------------l~~~~-----~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT------------IEGVQ-----YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCC------------CTTGG-----GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-G
T ss_pred CCcCEEEeeCCCccC------------chhhh-----ccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-h
Confidence 779999998875322 11233 34599999999999999988556899999999999999986 3
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCC
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSN 473 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 473 (567)
+. .+++|++|++++|.... ...+..+++|++|++++|. +..++. +..+++|++|++++|......+.....+
T Consensus 103 ~~-~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 174 (308)
T 1h6u_A 103 IA-GLQSIKTLDLTSTQITD-----VTPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSK 174 (308)
T ss_dssp GT-TCTTCCEEECTTSCCCC-----CGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred hc-CCCCCCEEECCCCCCCC-----chhhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCC
Confidence 44 89999999999997532 2347899999999999998 455555 8899999999999986554333222349
Q ss_pred CceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCc
Q 008394 474 TSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
|++|++++|.++.++. +..+++|++|++++|++.+ ++. +..+++|+.|++++|++..
T Consensus 175 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccCcChh-hcCCCCCCEEEccCCccCc-ccc-ccCCCCCCEEEccCCeeec
Confidence 9999999999998876 8999999999999998654 443 8999999999999987643
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=5.7e-17 Score=171.32 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=144.7
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
.+++.|++.+|... .+|..-+++|++|++++|.++.+| ..+++|++|++++|+++.+|.
T Consensus 59 ~~L~~L~Ls~n~L~------------------~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLS------------------SLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSSCCS------------------CCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCccEEEeCCCCCC------------------ccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-
Confidence 48999999887532 233222358999999999999988 447899999999999998887
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCC
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSN 473 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 473 (567)
+. + +|++|++++|.... .+ . .+++|++|++++|. +..+|. .+++|++|+|++|.... +|. +..+
T Consensus 118 l~-~--~L~~L~Ls~N~l~~--lp--~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~~~ 181 (571)
T 3cvr_A 118 LP-A--SLKHLDVDNNQLTM--LP--E---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LPES 181 (571)
T ss_dssp CC-T--TCCEEECCSSCCSC--CC--C---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CCTT
T ss_pred hh-c--CCCEEECCCCcCCC--CC--C---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hhCC
Confidence 44 3 89999999986532 22 2 57899999999988 445776 57899999999976544 776 4479
Q ss_pred CceeeccCccCcccChhhhccCCC-------cEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCC
Q 008394 474 TSCLFLSGTAIEELPSSIELLLRL-------EYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQL 542 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~~~~~l~~L-------~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 542 (567)
|++|++++|.++.+|. +.. +| ++|++++|.+. .+|..+..+++|+.|++++|++.+..|..+..+
T Consensus 182 L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 182 LEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999999999998887 554 67 99999998754 688888889999999999999888887776554
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.5e-17 Score=174.01 Aligned_cols=183 Identities=21% Similarity=0.277 Sum_probs=148.0
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
.+|+.|++++|.++.+|..+ .++|++|++++|.+..+| . .+++|++|++++|... .. +. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~-~l~~L~~L~Ls~N~l~--~i--p~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---E-LPASLEYLDACDNRLS--TL--PE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---C-CCTTCCEEECCSSCCS--CC--CC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---c-ccCCCCEEEccCCCCC--Cc--ch-hhc--CCCEEE
Confidence 38999999999999998866 488999999999999888 2 5789999999999653 22 22 333 899999
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p 512 (567)
+++|. +..+|. .+++|++|++++|... .+|. ...+|++|++++|.++.+|. +. ++|++|++++|.+. .+|
T Consensus 127 Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 127 VDNNQ-LTMLPE---LPALLEYINADNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp CCSSC-CSCCCC---CCTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCCCc-CCCCCC---cCccccEEeCCCCccC-cCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence 99998 444777 6899999999997654 4776 45699999999999999988 65 89999999999855 777
Q ss_pred ccccCCCCC-------cEEeccCCCCCcccCcccCCCCCcceeccccccccccchh
Q 008394 513 SSLCKLKSL-------EILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKA 561 (567)
Q Consensus 513 ~~~~~l~~L-------~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~ 561 (567)
. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+++..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 7 554 77 99999998765 6888888899999999999998765443
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=9.7e-17 Score=152.96 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=132.0
Q ss_pred ccccCCCCCCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCC
Q 008394 344 VSYLEDPRFTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTL 421 (567)
Q Consensus 344 l~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 421 (567)
+..+|..-..+++.|++++|.+..++... .+++|++|++++|.+..++...+.++++|++|++++|.... ..+..
T Consensus 26 l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS---LPLGV 102 (251)
T ss_dssp CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---CCTTT
T ss_pred ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc---cChhH
Confidence 33444323368999999999999887643 48999999999999999988877799999999999997642 23456
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccCh-hhhccCCCc
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPS-SIELLLRLE 498 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~-~~~~l~~L~ 498 (567)
+..+++|++|++++|.+....+..+..+++|++|+|++|......+.... .+|++|++++|.++.+|. .+..+++|+
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 78899999999999985544445578899999999999865544443333 499999999999998876 689999999
Q ss_pred EEecCCCccCcc
Q 008394 499 YLDLSDCKRLKS 510 (567)
Q Consensus 499 ~L~l~~~~~~~~ 510 (567)
+|++++|++...
T Consensus 183 ~L~l~~N~~~c~ 194 (251)
T 3m19_A 183 TITLFGNQFDCS 194 (251)
T ss_dssp EEECCSCCBCTT
T ss_pred EEEeeCCceeCC
Confidence 999999997665
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.9e-17 Score=158.48 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=114.8
Q ss_pred CCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 353 TEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
++|+.|++++|.+..++....+++|++|++++|++..++. +. ++++|++|++++|.... +..+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~-~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LA-NLKNLGWLFLDENKVKD-----LSSLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCC-----GGGGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cc-cCCCCCEEECCCCcCCC-----ChhhccCCCCCEEE
Confidence 4888999999988888775567888899999888888776 43 78888888888886432 33477788888888
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccC
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSL 511 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~ 511 (567)
+++|. +..++ .+..+++|++|++++|.... ++.... .+|++|++++|.++.++. +..+++|++|++++|.+. .+
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~-~l 193 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DL 193 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BC
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC-CC
Confidence 88887 44443 47788888888888865433 222222 266666666666666554 666666666666666533 34
Q ss_pred cccccCCCCCcEEeccCCCCC
Q 008394 512 PSSLCKLKSLEILDLSGCSNL 532 (567)
Q Consensus 512 p~~~~~l~~L~~L~l~~~~~~ 532 (567)
|. +..+++|+.|++++|+..
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCccc
Confidence 43 666666666666665543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=163.07 Aligned_cols=196 Identities=18% Similarity=0.122 Sum_probs=148.4
Q ss_pred CCeeEEeeCCCCCCCC-CCC---CCCCCceEEEccCCcccccch----hhhhhccCCcEEecccCccccccCCCCCCCCC
Q 008394 353 TEVKYLHWHGYPLKSM-PSN---ICAEQLVFLEVPNSSIEQLWD----GMKQHRGKLNQIIHATCKMLIAKTPNPTLIPH 424 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l-~~~---~~~~~L~~L~l~~n~i~~l~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 424 (567)
++|++|++++|.+... |.. ..+++|++|++++|.+..... .....+++|++|++++|.... ..+..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA---FSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC---CCTTSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch---hhHHHhcc
Confidence 3699999999988754 444 347889999999998886322 222368899999999997632 33456788
Q ss_pred CcCCcEEecCCCccCCc--cC--CcccCCCCCcEEEcCCCCCCCcCCcc------ccCCCceeeccCccCccc-Chhhhc
Q 008394 425 LNKLVILNLRGSKSLKS--LP--AGIFNLEFLTTLDLSGCPKLKRLPEI------SSSNTSCLFLSGTAIEEL-PSSIEL 493 (567)
Q Consensus 425 l~~L~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~Ls~~~~~~~~~~~------~~~~L~~L~l~~~~i~~l-p~~~~~ 493 (567)
+++|++|++++|.+.+. ++ ..+..+++|++|++++|... .++.. ...+|++|++++|.++.+ |..+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 99999999999986542 32 33467899999999998653 33331 224899999999999976 777766
Q ss_pred c---CCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccc
Q 008394 494 L---LRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 494 l---~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
+ ++|++|++++|++. .+|..+. ++|+.|++++|.+.+ +|. +..+++|+.|++++|.+++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 6 69999999999866 7787664 799999999988764 344 6788999999999998865
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=3.3e-17 Score=164.28 Aligned_cols=202 Identities=19% Similarity=0.168 Sum_probs=143.8
Q ss_pred CCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCccc-ccchhhhhhccCCcEEecc-cCccccccCCCCCCCCCCcCC
Q 008394 353 TEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIE-QLWDGMKQHRGKLNQIIHA-TCKMLIAKTPNPTLIPHLNKL 428 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~-~l~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~l~~L 428 (567)
.+++.|++++|.++.+|... .+++|++|++++|++. .++...+.++++|.++.+. .|+... ..+..|..+++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~---l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY---INPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE---ECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc---cCchhhhhcccc
Confidence 67888999999888888643 4788999999998874 4677777678887765444 344321 234567888899
Q ss_pred cEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc----CCCceeeccCccCcccChhhhccCCCcEEecCC
Q 008394 429 VILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS----SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSD 504 (567)
Q Consensus 429 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~----~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 504 (567)
++|++++|.+....+..+....++..|++.+++.+..++.... ..++.|++++|+++.+|.......+|+.|++.+
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 9999988884444444555677788888888777776665432 267889999999998888777778899999987
Q ss_pred CccCccCcc-cccCCCCCcEEeccCCCCCcccCc-ccCCCCCcceeccccccccccch
Q 008394 505 CKRLKSLPS-SLCKLKSLEILDLSGCSNLQRLPE-CLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 505 ~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
|...+.+|. .|..+++|+.|++++|.+. .+|. .+.++++|+.+++ +.++++|.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~--~~l~~lP~ 241 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST--YNLKKLPT 241 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTC--TTCCCCCC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccC--CCcCcCCC
Confidence 666777775 4788899999999987654 5554 3444444444333 35667764
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.7e-16 Score=146.70 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=127.0
Q ss_pred eEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCC
Q 008394 356 KYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRG 435 (567)
Q Consensus 356 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 435 (567)
+.+++.++.++.+|... .++|++|++++|++..++...+..+++|++|++++|+... ..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc---cChhhcCCCCCcCEEECCC
Confidence 56677777777777544 4578888888888887777766678888888888876432 2233466778888888888
Q ss_pred CccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCCCccCccCc
Q 008394 436 SKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 436 ~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p 512 (567)
|.+....+..+..+++|++|++++|......+.... .+|++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 874433334467788888888888654433332222 3777788888888877765 788899999999988644
Q ss_pred ccccCCCCCcEEeccCCCCCcccCcccCCCCC
Q 008394 513 SSLCKLKSLEILDLSGCSNLQRLPECLGQLSS 544 (567)
Q Consensus 513 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 544 (567)
+.+++|+.|+++.|...+.+|..++.++.
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888888889888877665
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=9.4e-17 Score=171.53 Aligned_cols=169 Identities=19% Similarity=0.222 Sum_probs=133.5
Q ss_pred CCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 352 FTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
+.+|+.|++++|.+..++....+++|+.|++++|.+..+++ + ..+++|+.|+|++|... .+..+..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~-----~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIK-----DLSSLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCC-----CCTTSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCC-----CChhhccCCCCCEE
Confidence 34899999999999999876678999999999999999887 4 48999999999999643 24468889999999
Q ss_pred ecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcccChhhhccCCCcEEecCCCccCcc
Q 008394 432 NLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 510 (567)
+|++|.+ ..++ .+..+++|+.|+|++|..... +.... .+|+.|+|++|.++.+++ +..+++|+.|+|++|.+..
T Consensus 115 ~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 115 SLEHNGI-SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp ECTTSCC-CCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-
T ss_pred EecCCCC-CCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-
Confidence 9999984 4454 488899999999999765443 33222 388888888888887765 7888888888888887544
Q ss_pred CcccccCCCCCcEEeccCCCCCc
Q 008394 511 LPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 511 ~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
+| .+..+++|+.|++++|++..
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEEC
T ss_pred Ch-HHccCCCCCEEEccCCcCcC
Confidence 44 47888888888888877654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.2e-16 Score=160.26 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=113.9
Q ss_pred CCCCeeEEeeCCCCCC-CCCCCC--CCCCce-EEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCc
Q 008394 351 RFTEVKYLHWHGYPLK-SMPSNI--CAEQLV-FLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLN 426 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~-~l~~~~--~~~~L~-~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 426 (567)
.+++|++|++++|.+. .+|... .++++. .+.+..|++..+++..+.++++|++|++++|+... . ....+....
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~-~~~~~~~~~ 128 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--L-PDVHKIHSL 128 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS--C-CCCTTCCBS
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc--C-Cchhhcccc
Confidence 4557777777777653 344433 244443 45555677777766666567777777777775432 1 122334455
Q ss_pred CCcEEecCCCccCCccCC-cccCC-CCCcEEEcCCCCCCCcCCccccC--CCceeeccC-ccCcccChh-hhccCCCcEE
Q 008394 427 KLVILNLRGSKSLKSLPA-GIFNL-EFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSG-TAIEELPSS-IELLLRLEYL 500 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~-~l~~l-~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L 500 (567)
++..|++.++..+..+|. .+..+ ..+++|++++|.. ..+|..... ++++|++++ |.++.+|.. |..+++|++|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 666677666554555553 34444 3566777777543 334433322 667777753 566677653 5677777777
Q ss_pred ecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecccc
Q 008394 501 DLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEK 552 (567)
Q Consensus 501 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 552 (567)
++++|+ +..+|.. .+.+|+.|.+.++...+.+|. +..+++|+.+++.+
T Consensus 208 dLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 208 DISRTR-IHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hcCCCC-cCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 777766 3345542 355666666666666666664 66677777777655
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=159.21 Aligned_cols=204 Identities=18% Similarity=0.081 Sum_probs=157.4
Q ss_pred CCeeEEeeCCCCCCC-----CCCCCCCCCceEEEccCCcccccchhhh--hhccCCcEEecccCccccccCCC--CCCCC
Q 008394 353 TEVKYLHWHGYPLKS-----MPSNICAEQLVFLEVPNSSIEQLWDGMK--QHRGKLNQIIHATCKMLIAKTPN--PTLIP 423 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~n~i~~l~~~~~--~~l~~L~~L~l~~~~~~~~~~~~--~~~~~ 423 (567)
..++.+.+.++.+.. +......++|++|++++|.+....+... .++++|++|++++|.... ..+. ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhh
Confidence 357778887776532 1122235679999999999986544443 589999999999997542 1110 02234
Q ss_pred CCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCc--CC--c--cccCCCceeeccCccCcccChh----hhc
Q 008394 424 HLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKR--LP--E--ISSSNTSCLFLSGTAIEELPSS----IEL 493 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~--~~--~--~~~~~L~~L~l~~~~i~~lp~~----~~~ 493 (567)
.+++|++|++++|.+.+..|..+..+++|++|++++|...+. ++ . ....+|++|++++|+++.+|.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 689999999999997666678899999999999999976542 22 1 1234899999999999877653 578
Q ss_pred cCCCcEEecCCCccCccCcccccCC---CCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccch
Q 008394 494 LLRLEYLDLSDCKRLKSLPSSLCKL---KSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 494 l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.++++|.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch
Confidence 8999999999999888778777776 69999999998877 7787764 799999999999998865
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=7e-16 Score=167.50 Aligned_cols=203 Identities=19% Similarity=0.209 Sum_probs=158.0
Q ss_pred CCCeeEEeeCCCCCCCCCCC----CCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcC
Q 008394 352 FTEVKYLHWHGYPLKSMPSN----ICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNK 427 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 427 (567)
+++|+.+++++|.+...... ....+|+++++..+.+..++.... .+++|+.++++.+.... ......+..+++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~--~~~~~~~~~l~~ 446 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN 446 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT-TCTTCCEEECTTSEEES--TTSSCTTTTCTT
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc-ccccccchhhhhccccc--cccccccccccc
Confidence 44667777766665432211 134567777777776666655555 77888888888776543 334456778899
Q ss_pred CcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCc-CCcccc--CCCceeeccCccCccc-ChhhhccCCCcEEecC
Q 008394 428 LVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKR-LPEISS--SNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLS 503 (567)
Q Consensus 428 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~-~~~~~~--~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~ 503 (567)
++.+++++|.+....|..+..+++|+.|++++|+.... .|.... .+|++|++++|+++.+ |..|.++++|++|+++
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 99999999987777777788899999999999875554 444443 3999999999999987 4569999999999999
Q ss_pred CCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCC-CCcceeccccccccc
Q 008394 504 DCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQL-SSLGTLLLEKPILRE 557 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~~~~l~~ 557 (567)
+|++.+..|..|.++++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+..
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999877777789999999999999999998888889887 689999999987743
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.6e-17 Score=165.81 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCeeEEeeCCCCCCC--CCCCC-CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 353 TEVKYLHWHGYPLKS--MPSNI-CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
++|++|++++|.+.. ++..+ .+++|++|++++|.+.........++++|++|++++|..+. ....+..+..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCCCC
Confidence 456666666555432 22222 24556666666665553222222245566666666553221 000111233455566
Q ss_pred EEecCCC-ccCCc-cCCcccCCC-CCcEEEcCCCC--CC-CcCCccc--cCCCceeeccCcc-Cc-ccChhhhccCCCcE
Q 008394 430 ILNLRGS-KSLKS-LPAGIFNLE-FLTTLDLSGCP--KL-KRLPEIS--SSNTSCLFLSGTA-IE-ELPSSIELLLRLEY 499 (567)
Q Consensus 430 ~L~l~~~-~~~~~-~p~~l~~l~-~L~~L~Ls~~~--~~-~~~~~~~--~~~L~~L~l~~~~-i~-~lp~~~~~l~~L~~ 499 (567)
+|++++| .+... ++..+..++ +|++|++++|. .. ..++... ..+|++|++++|. ++ ..+..+..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 6666655 42221 344444555 66666666552 11 1222221 1255566665555 33 33445555555666
Q ss_pred EecCCCccC-ccCcccccCCCCCcEEeccCC
Q 008394 500 LDLSDCKRL-KSLPSSLCKLKSLEILDLSGC 529 (567)
Q Consensus 500 L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~ 529 (567)
|++++|... ......+.++++|+.|++++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666555311 111113455555666666555
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.9e-16 Score=144.93 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=103.5
Q ss_pred CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCc
Q 008394 374 AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLT 453 (567)
Q Consensus 374 ~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 453 (567)
+++|+.|++++|.+..++ ++. .+++|++|++++|... .+..+..+++|++|++++|.+....|..+..+++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~l~~n~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIE-YAHNIKDLTINNIHAT-----NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGG-GCTTCSEEEEESCCCS-----CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCCccChH-HHh-cCCCCCEEEccCCCCC-----cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 344555555555555544 333 6677777777776321 233566677778888877776555666677777777
Q ss_pred EEEcCCCCCCCcCCccccCCCceeeccCccCcc-cChhhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCC
Q 008394 454 TLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEE-LPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNL 532 (567)
Q Consensus 454 ~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 532 (567)
+|++++ |.++. .|..+..+++|++|++++|+..+.+| .+..+++|+.|++++|.+.
T Consensus 116 ~L~Ls~----------------------n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 116 LLDISH----------------------SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EEECCS----------------------SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEEecC----------------------CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 777777 55553 46678888888888888887666676 5888888999999887765
Q ss_pred cccCcccCCCCCcceeccccccccc
Q 008394 533 QRLPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 533 ~~~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
. ++ .+..+++|+.|++++|.+.+
T Consensus 173 ~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 D-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CT-TGGGCSSCCEEEECBC----
T ss_pred C-hH-HhccCCCCCEEEeeCcccCC
Confidence 4 44 57788889999999888754
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=2.4e-18 Score=179.59 Aligned_cols=254 Identities=13% Similarity=0.057 Sum_probs=125.9
Q ss_pred eEEEEEeecCcccccC-hhhhhcccccccCCCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCC
Q 008394 285 LLWVITLEYSSIYKLD-MDIFINSRIDESRINSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGY 363 (567)
Q Consensus 285 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~ 363 (567)
.++.+.++.+.+.... ...|.. + +++++|++.+|.........++. .+... ++|++|++++|
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~--~----~~L~~L~L~~~~l~~~~~~~l~~------~l~~~-----~~L~~L~Ls~n 66 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPL--L----QQCQVVRLDDCGLTEARCKDISS------ALRVN-----PALAELNLRSN 66 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHH--H----TTCSEEEEESSCCCHHHHHHHHH------HHHTC-----TTCCEEECTTC
T ss_pred cceehhhhhcccCchhHHHHHhh--c----CCccEEEccCCCCCHHHHHHHHH------HHHhC-----CCcCEEeCCCC
Confidence 4566666666655443 333555 5 77777777777644332222222 22222 36777777776
Q ss_pred CCCCCCC--CC-CCC----CceEEEccCCcccc-----cchhhhhhccCCcEEecccCccccccCCCC--CCCCCCcCCc
Q 008394 364 PLKSMPS--NI-CAE----QLVFLEVPNSSIEQ-----LWDGMKQHRGKLNQIIHATCKMLIAKTPNP--TLIPHLNKLV 429 (567)
Q Consensus 364 ~~~~l~~--~~-~~~----~L~~L~l~~n~i~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~l~~L~ 429 (567)
.+..... .. .++ +|++|++++|.+.. ++..+. ++++|++|++++|.......... ......++|+
T Consensus 67 ~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 67 ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 6543110 00 112 57777777776663 233333 66677777777765321000000 0011234566
Q ss_pred EEecCCCccCCc----cCCcccCCCCCcEEEcCCCCCCCcCCccc-------cCCCceeeccCccCcc-----cChhhhc
Q 008394 430 ILNLRGSKSLKS----LPAGIFNLEFLTTLDLSGCPKLKRLPEIS-------SSNTSCLFLSGTAIEE-----LPSSIEL 493 (567)
Q Consensus 430 ~L~l~~~~~~~~----~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~-------~~~L~~L~l~~~~i~~-----lp~~~~~ 493 (567)
+|++++|.+... ++..+..+++|++|++++|......+... ..+|++|++++|.++. ++..+..
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 666666654332 23444455666666666654322111111 1256666666666553 3445555
Q ss_pred cCCCcEEecCCCccCccC-----cccccCCCCCcEEeccCCCCCcc----cCcccCCCCCcceecccccccc
Q 008394 494 LLRLEYLDLSDCKRLKSL-----PSSLCKLKSLEILDLSGCSNLQR----LPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 494 l~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
+++|++|++++|.+.... +..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+.
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 666666666665533221 11122455555555555544332 3444444555555555555543
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=3.8e-16 Score=149.75 Aligned_cols=169 Identities=21% Similarity=0.176 Sum_probs=80.9
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
++..+++.++.++.++....+++|++|++++|.+..++ .+. .+++|++|++++|.... .+ .+..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~L~~N~i~~--~~---~l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQ-FFTNLKELHLSHNQISD--LS---PLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGG-GCTTCCEEECCSSCCCC--CG---GGTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHh-hCCCCCEEECCCCccCC--Ch---hhccCCCCCEEEC
Confidence 45555555555555553333455555555555555554 222 45555555555554221 11 1445555555555
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcc
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPS 513 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 513 (567)
++|. +..+|... . ++|++|++++ |.++.++ .+..+++|++|++++|++.+ +|
T Consensus 93 ~~N~-l~~l~~~~-~-~~L~~L~L~~----------------------N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~- 144 (263)
T 1xeu_A 93 NRNR-LKNLNGIP-S-ACLSRLFLDN----------------------NELRDTD-SLIHLKNLEILSIRNNKLKS-IV- 144 (263)
T ss_dssp CSSC-CSCCTTCC-C-SSCCEEECCS----------------------SCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-
T ss_pred CCCc-cCCcCccc-c-CcccEEEccC----------------------CccCCCh-hhcCcccccEEECCCCcCCC-Ch-
Confidence 5554 33333311 2 5555555555 5444443 34555555555555554322 23
Q ss_pred cccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccc
Q 008394 514 SLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 514 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...|
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 345555555555555444332 33445555555555555554443
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=8e-18 Score=169.67 Aligned_cols=232 Identities=13% Similarity=-0.008 Sum_probs=137.9
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCC-C-C-----CCCceEEEccCCc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSN-I-C-----AEQLVFLEVPNSS 386 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~-----~~~L~~L~l~~n~ 386 (567)
.+|+.|++++|.........+.. .+..+| .+|++|++++|.+...... + . .++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~------~l~~~~----~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQ------AFANTP----ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHH------HHHTCC----TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCCCChHHHHHHHH------HHHhCC----CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 45777777776543332211112 222222 2677788877776654321 1 1 2678888888887
Q ss_pred ccccchhhhh----hc-cCCcEEecccCccccccCCCCCC----CCC-CcCCcEEecCCCccCC----ccCCcccCCC-C
Q 008394 387 IEQLWDGMKQ----HR-GKLNQIIHATCKMLIAKTPNPTL----IPH-LNKLVILNLRGSKSLK----SLPAGIFNLE-F 451 (567)
Q Consensus 387 i~~l~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~----~~p~~l~~l~-~ 451 (567)
+......... .+ ++|++|++++|.... . .+.. +.. .++|++|++++|.+.. .++..+..++ +
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSS--K-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG--S-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCc--H-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 7765444221 23 678888888876432 1 1111 122 2478888888877443 2334444554 7
Q ss_pred CcEEEcCCCCCCCcCCccc------c-CCCceeeccCccCcc-----cChhhhcc-CCCcEEecCCCccCccCc----cc
Q 008394 452 LTTLDLSGCPKLKRLPEIS------S-SNTSCLFLSGTAIEE-----LPSSIELL-LRLEYLDLSDCKRLKSLP----SS 514 (567)
Q Consensus 452 L~~L~Ls~~~~~~~~~~~~------~-~~L~~L~l~~~~i~~-----lp~~~~~l-~~L~~L~l~~~~~~~~~p----~~ 514 (567)
|++|+|++|......+... . .+|++|++++|.++. ++..+..+ ++|++|++++|.+....+ ..
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 8888888876544333211 1 378888888888775 56666653 488888888887655333 33
Q ss_pred ccCCCCCcEEeccCCCCC-------cccCcccCCCCCcceecccccccccc
Q 008394 515 LCKLKSLEILDLSGCSNL-------QRLPECLGQLSSLGTLLLEKPILREY 558 (567)
Q Consensus 515 ~~~l~~L~~L~l~~~~~~-------~~~p~~l~~l~~L~~L~l~~~~l~~~ 558 (567)
+..+++|+.|++++|... ..++..+..+++|+.|++++|.+...
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 567778888888887621 22344566777888888888877543
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.6e-15 Score=141.32 Aligned_cols=151 Identities=22% Similarity=0.247 Sum_probs=115.7
Q ss_pred eeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecC
Q 008394 355 VKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLR 434 (567)
Q Consensus 355 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 434 (567)
-+.+++.++.++.+|.... ++|+.|++++|.+..++...+..+++|++|++++|.... ..+..|..+++|++|+|+
T Consensus 13 ~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~---~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE---LAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE---ECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC---cCHHHhhCCcCCCEEECC
Confidence 3678888999999887654 788999999999988887766678888888888886532 234567777888888888
Q ss_pred CCccCCccCC-cccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCc
Q 008394 435 GSKSLKSLPA-GIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 435 ~~~~~~~~p~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p 512 (567)
+|. +..+|. .+..+++|++|+|++ |.++.+ |..+..+++|++|++++|.+....+
T Consensus 89 ~N~-l~~l~~~~f~~l~~L~~L~L~~----------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 89 GNK-ITELPKSLFEGLFSLQLLLLNA----------------------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCc-CCccCHhHccCCCCCCEEECCC----------------------CCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 877 444553 356677777777777 566665 4568889999999999998776666
Q ss_pred ccccCCCCCcEEeccCCCCC
Q 008394 513 SSLCKLKSLEILDLSGCSNL 532 (567)
Q Consensus 513 ~~~~~l~~L~~L~l~~~~~~ 532 (567)
..+..+++|+.|++++|++.
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEE
T ss_pred HHHhCCCCCCEEEeCCCCcC
Confidence 67889999999999998764
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=3e-15 Score=140.33 Aligned_cols=154 Identities=19% Similarity=0.141 Sum_probs=109.7
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
+.+.++++++.++.+|.... ++|++|++++|.+..+++..+.++++|++|++++|.... ..+..+..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~---i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA---LPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC---cChhhcccCCCcCEEEC
Confidence 45678888888888887653 788899999998888866666578888888888886521 22344677888888888
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcc
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPS 513 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 513 (567)
++|.+....+..+..+++|++|++++ |.++.+|..+..+++|++|++++|++....+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~----------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCC----------------------NKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccC----------------------CcccccCcccccCCCCCEEECCCCcCCccCHH
Confidence 88874443344466788888888877 55666676777777777777777765544444
Q ss_pred cccCCCCCcEEeccCCCCCc
Q 008394 514 SLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 514 ~~~~l~~L~~L~l~~~~~~~ 533 (567)
.+..+++|+.|++++|++..
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCT
T ss_pred HHhCCCCCCEEEeeCCCccC
Confidence 56777777777777766553
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=140.72 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=114.2
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccc-hhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLW-DGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
.-+.++++++.++.+|..+ .+.+++|++++|.+..++ ...+.++++|++|++++|.... ..+..+..+++|++|+
T Consensus 12 ~~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEIL 87 (220)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEE
T ss_pred CCCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE---ECHHHhCCCCCCCEEE
Confidence 3468889999888888754 456788888888888873 3445577888888888776432 2234567777777777
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccC
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSL 511 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~ 511 (567)
+++|.+.+..|..+..+++|++|+|++ |.++.+ |..+..+++|++|++++|.+.+..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~----------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRS----------------------NRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTT----------------------SCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCC----------------------CcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 777775444445566777777777777 566655 456888899999999998877777
Q ss_pred cccccCCCCCcEEeccCCCCCcc
Q 008394 512 PSSLCKLKSLEILDLSGCSNLQR 534 (567)
Q Consensus 512 p~~~~~l~~L~~L~l~~~~~~~~ 534 (567)
|..|..+++|+.|++++|++...
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECS
T ss_pred HHHhcCCCCCCEEEecCcCCcCC
Confidence 88888999999999998877543
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.4e-17 Score=169.62 Aligned_cols=210 Identities=17% Similarity=0.125 Sum_probs=158.2
Q ss_pred CCeeEEeeCCCCCCCC-----CCCC-CCCCceEEEccCCccccc----chhh------hhhccCCcEEecccCccccccC
Q 008394 353 TEVKYLHWHGYPLKSM-----PSNI-CAEQLVFLEVPNSSIEQL----WDGM------KQHRGKLNQIIHATCKMLIAKT 416 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~n~i~~l----~~~~------~~~l~~L~~L~l~~~~~~~~~~ 416 (567)
++|++|++++|.+... +..+ .+++|++|++++|.+..+ |.++ ..++++|++|++++|.......
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4899999999987653 2222 478999999999866543 4444 1478999999999997432000
Q ss_pred -CCCCCCCCCcCCcEEecCCCccCCc----cCCcccCC---------CCCcEEEcCCCCCC-CcCCc---c--ccCCCce
Q 008394 417 -PNPTLIPHLNKLVILNLRGSKSLKS----LPAGIFNL---------EFLTTLDLSGCPKL-KRLPE---I--SSSNTSC 476 (567)
Q Consensus 417 -~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~Ls~~~~~-~~~~~---~--~~~~L~~ 476 (567)
..+..+..+++|++|+|++|.+... ++..+..+ ++|++|++++|... ..++. . ...+|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 0122456789999999999986433 33334444 99999999998765 34442 1 1239999
Q ss_pred eeccCccCc------ccChhhhccCCCcEEecCCCccC----ccCcccccCCCCCcEEeccCCCCCcc----cCccc--C
Q 008394 477 LFLSGTAIE------ELPSSIELLLRLEYLDLSDCKRL----KSLPSSLCKLKSLEILDLSGCSNLQR----LPECL--G 540 (567)
Q Consensus 477 L~l~~~~i~------~lp~~~~~l~~L~~L~l~~~~~~----~~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l--~ 540 (567)
|++++|+++ -+|..+..+++|++|++++|.+. ..+|..+..+++|+.|++++|.+... +|..+ +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 999999998 23447889999999999999975 66888899999999999999988755 56666 3
Q ss_pred CCCCcceeccccccccc-----cchhh
Q 008394 541 QLSSLGTLLLEKPILRE-----YQKAS 562 (567)
Q Consensus 541 ~l~~L~~L~l~~~~l~~-----~p~~~ 562 (567)
.+++|+.|++++|.++. +|...
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 49999999999999988 77765
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=2.8e-17 Score=163.94 Aligned_cols=197 Identities=22% Similarity=0.236 Sum_probs=154.4
Q ss_pred CCeeEEeeCCCCCCCCCCC-CCCCCceEEEccCCcccc--cchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCc
Q 008394 353 TEVKYLHWHGYPLKSMPSN-ICAEQLVFLEVPNSSIEQ--LWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLV 429 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~n~i~~--l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 429 (567)
.+++.|++.+|.+...+.. ..+++|++|++++|.+.. ++..+ .++++|++|++++|.... ..+..+..+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~L~L~~~~l~~---~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQNLSLEGLRLSD---PIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSEEECTTCBCCH---HHHHHHTTCTTCS
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCEEeCcCcccCH---HHHHHHhcCCCCC
Confidence 4899999999988766544 458999999999999875 44444 489999999999996432 1233466799999
Q ss_pred EEecCCCccCC--ccCCcccCCCCCcEEEcCCCCCCCc--CCcc--ccC-CCceeeccCcc--C--cccChhhhccCCCc
Q 008394 430 ILNLRGSKSLK--SLPAGIFNLEFLTTLDLSGCPKLKR--LPEI--SSS-NTSCLFLSGTA--I--EELPSSIELLLRLE 498 (567)
Q Consensus 430 ~L~l~~~~~~~--~~p~~l~~l~~L~~L~Ls~~~~~~~--~~~~--~~~-~L~~L~l~~~~--i--~~lp~~~~~l~~L~ 498 (567)
+|++++|..+. .++..+..+++|++|++++|..+.. ++.. ... +|++|++++|. + ..+|..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 99999994344 3666688899999999999944432 3332 234 89999999994 4 36778889999999
Q ss_pred EEecCCCc-cCccCcccccCCCCCcEEeccCCCCC-cccCcccCCCCCcceeccccc
Q 008394 499 YLDLSDCK-RLKSLPSSLCKLKSLEILDLSGCSNL-QRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 499 ~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~ 553 (567)
+|++++|. +....+..+.++++|+.|++++|... ......++.+++|+.|++++|
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99999998 55677778999999999999999632 222235788999999999999
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=139.79 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=79.3
Q ss_pred EEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcC
Q 008394 379 FLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLS 458 (567)
Q Consensus 379 ~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls 458 (567)
.+++++|.+..+|..+. ..+++|++++|.... .+....+..+++|++|++++|.+.+..+..+..+++|++|+|+
T Consensus 15 ~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCcccCccCCC---CCCCEEEcCCCcCCc--cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 55555565555554332 234556666554322 1122234555566666666555333333345555555555555
Q ss_pred CCCCCCcCCccccCCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCc
Q 008394 459 GCPKLKRLPEISSSNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPE 537 (567)
Q Consensus 459 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~ 537 (567)
+ |.++.+|. .+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..|.
T Consensus 90 ~----------------------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 90 S----------------------NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp S----------------------SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred C----------------------CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 5 33444433 255555666666666555554455555556666666666555554455
Q ss_pred ccCCCCCcceecccccccc
Q 008394 538 CLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 538 ~l~~l~~L~~L~l~~~~l~ 556 (567)
.+..+++|+.|++++|.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 5555566666666655543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=9e-16 Score=140.42 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=117.5
Q ss_pred CCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 352 FTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
+++|+.|++++|.+..+|....+++|++|++++|.+..++ .+. .+++|++|++++|.... ..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~-~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PIS-GLSNLERLRIMGKDVTS---DKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGT-TCTTCCEEEEECTTCBG---GGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhh-cCCCCCEEEeECCccCc---ccChhhcCCCCCCEE
Confidence 4589999999999999996556899999999999888775 444 79999999999997542 235568899999999
Q ss_pred ecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccC
Q 008394 432 NLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSL 511 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~ 511 (567)
++++|.+....|..+..+++|++|++++|.. ++.+| .+..+++|++|++++|++.. +
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~---------------------i~~~~-~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGA---------------------ITDIM-PLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTB---------------------CCCCG-GGGGCSSCCEEECTTBCCCC-C
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCC---------------------ccccH-hhcCCCCCCEEECCCCCCcC-h
Confidence 9999997777788899999999999999642 44444 46677777777777776443 4
Q ss_pred cccccCCCCCcEEeccCCCC
Q 008394 512 PSSLCKLKSLEILDLSGCSN 531 (567)
Q Consensus 512 p~~~~~l~~L~~L~l~~~~~ 531 (567)
+ .+..+++|+.|++++|++
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp T-TGGGCSSCCEEEECBC--
T ss_pred H-HhccCCCCCEEEeeCccc
Confidence 4 467777777777777654
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=1.6e-15 Score=152.71 Aligned_cols=174 Identities=18% Similarity=0.152 Sum_probs=112.7
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhh-hccCCcEEecccCccccccCCCCCCCCCCcCCcEEe
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQ-HRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILN 432 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 432 (567)
.-++++++++.++.+|..+ .+.++.|++++|++..++...+. ++++|++|+|++|.... ..+..|..+++|++|+
T Consensus 19 ~~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLD 94 (361)
T ss_dssp ETTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc---cChhhccCCCCCCEEE
Confidence 3468899999999998754 45689999999999998888776 78999999999887543 2234678888999999
Q ss_pred cCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChhh----hccCCCcEEecCCCc
Q 008394 433 LRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSSI----ELLLRLEYLDLSDCK 506 (567)
Q Consensus 433 l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l~~~~ 506 (567)
|++|.+....+..+..+++|++|+|++|......|..+. .+|++|+|++|.++.+|..+ ..+++|++|++++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 999885444445677889999999888654333232222 15555555555555555432 345555555555554
Q ss_pred cCccCcccccCCCC--CcEEeccCCCC
Q 008394 507 RLKSLPSSLCKLKS--LEILDLSGCSN 531 (567)
Q Consensus 507 ~~~~~p~~~~~l~~--L~~L~l~~~~~ 531 (567)
+....+..+..+++ |+.|++++|++
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCc
Confidence 33322233444443 24455555443
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=4.3e-18 Score=177.64 Aligned_cols=205 Identities=18% Similarity=0.143 Sum_probs=139.9
Q ss_pred CCeeEEeeCCCCCCCCCCC-----C--CCCCceEEEccCCcccc-----cchhhhhhccCCcEEecccCccccccCC--C
Q 008394 353 TEVKYLHWHGYPLKSMPSN-----I--CAEQLVFLEVPNSSIEQ-----LWDGMKQHRGKLNQIIHATCKMLIAKTP--N 418 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~~-----~--~~~~L~~L~l~~n~i~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~--~ 418 (567)
++|++|++++|.+...... . ..++|++|++++|.+.. ++..+. .+++|++|++++|........ .
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHH
Confidence 4788888888765432111 1 13478888888888776 344444 788888888888864220000 0
Q ss_pred CCCCCCCcCCcEEecCCCccCCc----cCCcccCCCCCcEEEcCCCCCCCcCC----ccc---cCCCceeeccCccCcc-
Q 008394 419 PTLIPHLNKLVILNLRGSKSLKS----LPAGIFNLEFLTTLDLSGCPKLKRLP----EIS---SSNTSCLFLSGTAIEE- 486 (567)
Q Consensus 419 ~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~Ls~~~~~~~~~----~~~---~~~L~~L~l~~~~i~~- 486 (567)
+..+..+++|++|++++|.+... ++..+..+++|++|++++|......+ ... ..+|++|++++|.++.
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 11123478899999998874432 56667778899999999886433211 111 1388999999988873
Q ss_pred ----cChhhhccCCCcEEecCCCccCccCccccc-----CCCCCcEEeccCCCCCc----ccCcccCCCCCcceeccccc
Q 008394 487 ----LPSSIELLLRLEYLDLSDCKRLKSLPSSLC-----KLKSLEILDLSGCSNLQ----RLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 487 ----lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~ 553 (567)
+|..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+.. .+|..+..+++|+.|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 466677889999999999876554343332 26789999999988765 67777888899999999999
Q ss_pred ccccc
Q 008394 554 ILREY 558 (567)
Q Consensus 554 ~l~~~ 558 (567)
.+++.
T Consensus 409 ~i~~~ 413 (461)
T 1z7x_W 409 CLGDA 413 (461)
T ss_dssp SCCHH
T ss_pred CCCHH
Confidence 87654
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=4.3e-15 Score=137.14 Aligned_cols=168 Identities=15% Similarity=0.096 Sum_probs=134.4
Q ss_pred ccccCCCCCCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCC
Q 008394 344 VSYLEDPRFTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTL 421 (567)
Q Consensus 344 l~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 421 (567)
+..+|..-.++|++|++++|.++.++... .+++|++|++++|++..++...+..+++|++|++++|.... ..+..
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS---LPNGV 95 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc---cCHhH
Confidence 34444444569999999999999988754 48999999999999999998887789999999999997532 23345
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChhhhccCCCcE
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSSIELLLRLEY 499 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 499 (567)
+..+++|++|++++|.+.+..+..+..+++|++|++++|......+.... .+|++|++++|.+. +.+++|++
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~ 169 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRY 169 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHH
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHH
Confidence 78899999999999985544445578899999999999866544333233 39999999999655 44678999
Q ss_pred EecCCCccCccCcccccCCCC
Q 008394 500 LDLSDCKRLKSLPSSLCKLKS 520 (567)
Q Consensus 500 L~l~~~~~~~~~p~~~~~l~~ 520 (567)
|++..|.+.+.+|..++.++.
T Consensus 170 L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHhCCceeeccCccccC
Confidence 999999999999998887765
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.4e-15 Score=148.10 Aligned_cols=169 Identities=20% Similarity=0.201 Sum_probs=137.3
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
++++.|++.+|..... ..+.. +++|++|++++|.++.++....+++|++|++++|.+..++.
T Consensus 46 ~~L~~L~l~~~~i~~~------------~~~~~-----l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV------------QGIQY-----LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCC------------TTGGG-----CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-
T ss_pred CcccEEEccCCCcccC------------hhHhc-----CCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-
Confidence 7899999988753221 13333 45999999999999999885568999999999999999765
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCC
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSN 473 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 473 (567)
+. .+++|++|++++|.... ...+..+++|++|++++|.+ ..+ +.+..+++|++|++++|......+.....+
T Consensus 108 l~-~l~~L~~L~L~~n~i~~-----~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~ 179 (291)
T 1h6t_A 108 LK-DLKKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179 (291)
T ss_dssp GT-TCTTCCEEECTTSCCCC-----CGGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred hc-cCCCCCEEECCCCcCCC-----ChhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchhhcCCCc
Confidence 44 89999999999996532 34678899999999999984 445 568899999999999987655444333349
Q ss_pred CceeeccCccCcccChhhhccCCCcEEecCCCccCc
Q 008394 474 TSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 509 (567)
|++|++++|.++.+|. +..+++|++|++++|++..
T Consensus 180 L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 9999999999999874 8999999999999998654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.5e-14 Score=135.48 Aligned_cols=153 Identities=21% Similarity=0.166 Sum_probs=109.7
Q ss_pred ceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccC-CcccCCCCCcEE
Q 008394 377 LVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLP-AGIFNLEFLTTL 455 (567)
Q Consensus 377 L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L 455 (567)
...++.+++++..+|..+. ++|++|++++|.... ..+..+..+++|++|+|++|.+ ..+| ..+..+++|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEE
Confidence 3456777777777665443 566666666665422 2234455666666666666663 3343 334556666666
Q ss_pred EcCCCCCCCcCCccccCCCceeeccCccCcccChh-hhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcc
Q 008394 456 DLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQR 534 (567)
Q Consensus 456 ~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 534 (567)
+|++ |.++.+|.. +..+++|++|++++|.+. .+|..+.++++|+.|++++|.+...
T Consensus 94 ~Ls~----------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 94 DLGT----------------------NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp ECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred ECCC----------------------CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 6665 777777654 789999999999999855 8899999999999999999887755
Q ss_pred cCcccCCCCCcceeccccccccccc
Q 008394 535 LPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 535 ~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
.+..+..+++|+.|++++|.+....
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CHHHHhCCCCCCEEEeeCCCccCCc
Confidence 5567899999999999999886543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=3.8e-15 Score=159.11 Aligned_cols=170 Identities=20% Similarity=0.202 Sum_probs=138.4
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG 393 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~ 393 (567)
.+|+.|.+.+|.+.. +..+.. +++|+.|++++|.+..++....+++|+.|++++|.+..++ .
T Consensus 43 ~~L~~L~l~~n~i~~------------l~~l~~-----l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS------------VQGIQY-----LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-S 104 (605)
T ss_dssp TTCCCCBCTTCCCCC------------CTTGGG-----CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-T
T ss_pred CCCCEEECcCCCCCC------------ChHHcc-----CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-h
Confidence 789999988775321 112333 4599999999999999988556899999999999999876 4
Q ss_pred hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCC
Q 008394 394 MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSN 473 (567)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 473 (567)
+. .+++|++|+|++|.... ...+..+++|+.|+|++|.+ ..+ ..+..+++|+.|+|++|......|.....+
T Consensus 105 l~-~l~~L~~L~Ls~N~l~~-----l~~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~ 176 (605)
T 1m9s_A 105 LK-DLKKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTK 176 (605)
T ss_dssp ST-TCTTCCEEECTTSCCCC-----CGGGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred hc-cCCCCCEEEecCCCCCC-----CccccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECcCCcCCCchhhccCCC
Confidence 44 89999999999997532 34588999999999999984 444 568899999999999987766656333459
Q ss_pred CceeeccCccCcccChhhhccCCCcEEecCCCccCcc
Q 008394 474 TSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKS 510 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 510 (567)
|+.|+|++|.++.+| .+..+++|+.|++++|++...
T Consensus 177 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 177 LQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 999999999999885 689999999999999986653
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=7.2e-16 Score=147.79 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=114.9
Q ss_pred CCCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcE
Q 008394 351 RFTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVI 430 (567)
Q Consensus 351 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 430 (567)
.+++|++|++++|.++.++....+++|++|++++|.+..++. + .++++|++|++++|+... .+ .+.. ++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~--l~---~~~~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKN--LN---GIPS-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSC--CT---TCCC-SSCCE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCC--cC---cccc-CcccE
Confidence 456999999999999999965568999999999999999987 4 489999999999997542 22 2333 99999
Q ss_pred EecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc-cCCCceeeccCccCcccChhhhccCCCcEEecCCCccCc
Q 008394 431 LNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS-SSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLK 509 (567)
Q Consensus 431 L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~-~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 509 (567)
|++++|. +..++ .+..+++|++|++++|.... ++... ..+|++|++++|.++.+ ..+..+++|++|++++|++..
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEccCCc-cCCCh-hhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 9999998 55555 48899999999999976433 33222 23778888888777766 557777778888887776544
Q ss_pred c
Q 008394 510 S 510 (567)
Q Consensus 510 ~ 510 (567)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 3
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=7.2e-15 Score=147.85 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=132.4
Q ss_pred ccccCCCCCCCeeEEeeCCCCCCCCCCCC---CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCC
Q 008394 344 VSYLEDPRFTEVKYLHWHGYPLKSMPSNI---CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPT 420 (567)
Q Consensus 344 l~~~~~~~~~~L~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 420 (567)
+..+|..-...++.|++++|.++.++... .+++|++|++++|++..++...+.++++|++|+|++|+... ..+.
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~---~~~~ 106 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT---LDEF 106 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECTT
T ss_pred cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc---CCHH
Confidence 44444333467999999999999987754 57999999999999999998877799999999999998643 2345
Q ss_pred CCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccc------cCCCceeeccCccCcccCh-hhhc
Q 008394 421 LIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEIS------SSNTSCLFLSGTAIEELPS-SIEL 493 (567)
Q Consensus 421 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~------~~~L~~L~l~~~~i~~lp~-~~~~ 493 (567)
.|..+++|++|+|++|.+....|..+..+++|++|+|++|... .+|... ..+|+.|+|++|.++.+|. .+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 6789999999999999966666788999999999999997654 455433 3499999999999999985 5778
Q ss_pred cCC--CcEEecCCCccCc
Q 008394 494 LLR--LEYLDLSDCKRLK 509 (567)
Q Consensus 494 l~~--L~~L~l~~~~~~~ 509 (567)
++. |+.|++.+|++.-
T Consensus 186 l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCHHHHTTEECCSSCEEC
T ss_pred ccHhhcceEEecCCCccC
Confidence 877 4899999998653
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=3.1e-16 Score=158.05 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=152.1
Q ss_pred CCeeEEeeCCCCCCCCCC-----CC-CCC-CceEEEccCCcccccchhhhhhc-----cCCcEEecccCccccccCCCCC
Q 008394 353 TEVKYLHWHGYPLKSMPS-----NI-CAE-QLVFLEVPNSSIEQLWDGMKQHR-----GKLNQIIHATCKMLIAKTPNPT 420 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~n~i~~l~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~ 420 (567)
.+|++|++++|.+...+. .+ .++ +|++|++++|.+..........+ ++|++|++++|.... ..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~---~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY---KSSD 98 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG---SCHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh---HHHH
Confidence 569999999999988764 22 356 89999999999998755544354 999999999998532 1111
Q ss_pred C----CCCC-cCCcEEecCCCccCCccCCc----ccC-CCCCcEEEcCCCCCCCcC----Cccc---cCCCceeeccCcc
Q 008394 421 L----IPHL-NKLVILNLRGSKSLKSLPAG----IFN-LEFLTTLDLSGCPKLKRL----PEIS---SSNTSCLFLSGTA 483 (567)
Q Consensus 421 ~----~~~l-~~L~~L~l~~~~~~~~~p~~----l~~-l~~L~~L~Ls~~~~~~~~----~~~~---~~~L~~L~l~~~~ 483 (567)
. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|...... +... ..+|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 1 2334 79999999999955444333 334 369999999998755322 2221 1389999999999
Q ss_pred CcccCh-----hhhcc-CCCcEEecCCCccCcc----CcccccC-CCCCcEEeccCCCCCcccC----cccCCCCCccee
Q 008394 484 IEELPS-----SIELL-LRLEYLDLSDCKRLKS----LPSSLCK-LKSLEILDLSGCSNLQRLP----ECLGQLSSLGTL 548 (567)
Q Consensus 484 i~~lp~-----~~~~l-~~L~~L~l~~~~~~~~----~p~~~~~-l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L 548 (567)
++..+. .+..+ ++|++|++++|.+... ++..+.. .++|++|++++|.+....+ ..+..+++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 986543 34445 6999999999986652 5555655 4599999999998765433 345788999999
Q ss_pred ccccccccccchhhh
Q 008394 549 LLEKPILREYQKASS 563 (567)
Q Consensus 549 ~l~~~~l~~~p~~~~ 563 (567)
++++|.+..+++...
T Consensus 259 ~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 259 YLDYDIVKNMSKEQC 273 (362)
T ss_dssp EEEHHHHTTCCHHHH
T ss_pred EeccCCccccCHHHH
Confidence 999999877766544
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.9e-14 Score=125.86 Aligned_cols=135 Identities=23% Similarity=0.125 Sum_probs=87.2
Q ss_pred cCCcEEecCCCccC-CccCCcccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcc-cChhhhccCCCcEEec
Q 008394 426 NKLVILNLRGSKSL-KSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEE-LPSSIELLLRLEYLDL 502 (567)
Q Consensus 426 ~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l 502 (567)
++|++|++++|.+. +.+|..+..+++|++|++++|..... +.... .+|++|++++|.++. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34444444444422 24444444444444444444432221 11111 144444445577776 6777788999999999
Q ss_pred CCCccCccCc--ccccCCCCCcEEeccCCCCCcccC---cccCCCCCcceeccccccccccchhh
Q 008394 503 SDCKRLKSLP--SSLCKLKSLEILDLSGCSNLQRLP---ECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 503 ~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
++|.+.+ +| ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.++|++.
T Consensus 103 s~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 103 SGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp BSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred cCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 9998554 43 678999999999999987765433 36889999999999999999988753
No 117
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.51 E-value=9.9e-13 Score=131.59 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=146.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh--------------------------c------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS--------------------------S------ 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~--------------------------~------ 48 (567)
|+||++++++|.+++..+ +++.|+|++|+|||||++++++... .
T Consensus 14 ~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 89 (350)
T 2qen_A 14 IFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQ 89 (350)
T ss_dssp SCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHH
T ss_pred cCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHHHHHH
Confidence 699999999999999643 5999999999999999998875420 0
Q ss_pred ----------------------c---------------CCceEEEEcCccccH-------HHHHHHHhhcCCCCCCceEE
Q 008394 49 ----------------------D---------------FEGSCFLENVREESQ-------DQEESLIESLDWLTPVCRII 84 (567)
Q Consensus 49 ----------------------~---------------f~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~il 84 (567)
. -+.++.+|+++.... +.+..+...... .++.++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~i 168 (350)
T 2qen_A 90 KFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKII 168 (350)
T ss_dssp HHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEE
T ss_pred hHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEE
Confidence 0 033445555544321 222222222111 1467889
Q ss_pred EEeCChhhhhc----------c--CcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHHHHH
Q 008394 85 ITTRNKQVLRN----------W--GVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVLGCF 150 (567)
Q Consensus 85 vTtR~~~~~~~----------~--~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~~~~ 150 (567)
+|++....... . .....+++.+|+.+|+.+++....... ....+.+..+++.|+|+|+++..++..
T Consensus 169 l~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 169 LTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp EEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99887543111 1 112479999999999999998765322 234457889999999999999998876
Q ss_pred hcc-CCHHHHHHHHHHHhhcCchhHHHHHHHHHhcC---CHHHHHHHHhhcccCCCCChhHHHHHhhhc--CCCc---hh
Q 008394 151 LYK-MEKEVWDSAINKLQRIHHPSILQILKISYDGL---DDKEKNIFLDVACFFQGEDVNPVMKFLNAS--GFYP---EI 221 (567)
Q Consensus 151 l~~-~~~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L---~~~~k~~~~~~~~fp~~~~~~~l~~~w~~~--~~~~---~~ 221 (567)
+.. .+...+. ..+. +.....+...+..+ ++..+..+..+|. . ..+...+....... +... ..
T Consensus 249 ~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (350)
T 2qen_A 249 YLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRDYLAVKGTKIPEPRLYA 319 (350)
T ss_dssp HHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 432 2332221 1111 11111122222333 7888999999987 2 34555554443221 2322 34
Q ss_pred hhHHHhhcCCeEEecCCcEEehHHHHHHHH
Q 008394 222 GISVLVDKSLIVISNNNKITMHDWLQELGR 251 (567)
Q Consensus 222 ~l~~L~~~~lv~~~~~~~~~~H~~v~~~~~ 251 (567)
.++.|.+.++|...+..+...|++++++.+
T Consensus 320 ~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 320 LLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 589999999998874333445778887754
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.4e-16 Score=167.33 Aligned_cols=185 Identities=19% Similarity=0.139 Sum_probs=139.6
Q ss_pred CCCCceEEEccCCcccccchhhhhhccCCcEEecccCcccc----------ccCCCCCCCCCCcCCcEEe-cCCCccCCc
Q 008394 373 CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLI----------AKTPNPTLIPHLNKLVILN-LRGSKSLKS 441 (567)
Q Consensus 373 ~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~----------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~ 441 (567)
..++|+.|++++|+++.+|..+. ++++|+.|++++|.... .....+..+..+++|+.|+ ++.|. ...
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred cCccceeccCChhhHHhhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 36788899999999999999888 89999999987764110 0001123455677888887 44442 111
Q ss_pred cCC------cccC--CCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCc
Q 008394 442 LPA------GIFN--LEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 442 ~p~------~l~~--l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p 512 (567)
++. .+.. ...|+.|++++|.. ..+|.... .+|+.|++++|.++.+|..++.+++|++|++++|.+.+ +|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 111 0111 13588999999754 44676322 38999999999999999999999999999999998665 77
Q ss_pred ccccCCCCCcEEeccCCCCCccc-CcccCCCCCcceeccccccccccchhh
Q 008394 513 SSLCKLKSLEILDLSGCSNLQRL-PECLGQLSSLGTLLLEKPILREYQKAS 562 (567)
Q Consensus 513 ~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~~p~~~ 562 (567)
.++++++|+.|++++|.+.+.. |..++.+++|+.|++++|.++++|+..
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 7999999999999999887765 889999999999999999999988754
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=4.2e-13 Score=124.80 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=112.9
Q ss_pred ccccCCCCCCCeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCC
Q 008394 344 VSYLEDPRFTEVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTL 421 (567)
Q Consensus 344 l~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 421 (567)
+..+|..-.++|+.|++++|.++.++... .+++|++|++++|.+..+.+..+.++++|++|+|++|.... ..+..
T Consensus 23 l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~ 99 (220)
T 2v9t_B 23 LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE---LPKSL 99 (220)
T ss_dssp CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC---CCTTT
T ss_pred cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc---cCHhH
Confidence 34444333368999999999999988633 47999999999999999977766699999999999997642 23345
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccCh-hhhccCCCcEE
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS-SIELLLRLEYL 500 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L 500 (567)
+..+++|++|+|++|.+....|..+..+++|++|+|++ |.++.++. .+..+++|++|
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~----------------------N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD----------------------NKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS----------------------SCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC----------------------CcCCEECHHHHhCCCCCCEE
Confidence 78899999999999997666678899999999999998 55665654 47778888888
Q ss_pred ecCCCccCc
Q 008394 501 DLSDCKRLK 509 (567)
Q Consensus 501 ~l~~~~~~~ 509 (567)
++++|++..
T Consensus 158 ~L~~N~~~c 166 (220)
T 2v9t_B 158 HLAQNPFIC 166 (220)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCcCC
Confidence 888887543
No 120
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=3.6e-13 Score=135.20 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=142.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCcc-------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVRE------------------- 61 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~------------------- 61 (567)
|+||++++++|.+ +.. +++.|+|++|+|||+|++++.+..... .+|++....
T Consensus 15 ~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp SCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 6999999999999 843 599999999999999999998875422 344432110
Q ss_pred -------------------------------------ccHHHHHHHHh-----------hcCCC----------------
Q 008394 62 -------------------------------------ESQDQEESLIE-----------SLDWL---------------- 77 (567)
Q Consensus 62 -------------------------------------~~~~~~~~l~~-----------~~~~~---------------- 77 (567)
.....++.+.. ...|.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 00011111111 00110
Q ss_pred --CCCceEEEEeCChhhhhc----------cC-c-ccEEEcCCCCHHHHHHHHHHhhccC-CCChHHHHHHHHHcCCCch
Q 008394 78 --TPVCRIIITTRNKQVLRN----------WG-V-RKIYEMEALEYHHALELFSRHAFKQ-NHPDELSSKAVKYAQGVPL 142 (567)
Q Consensus 78 --~~~~~ilvTtR~~~~~~~----------~~-~-~~~~~l~~L~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~c~glPL 142 (567)
..+..+|+|++....... .. . ...+++.+|+.+++.+++....... ..+++ ...+++.|+|+|+
T Consensus 166 ~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~ 244 (357)
T 2fna_A 166 DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPG 244 (357)
T ss_dssp HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHH
T ss_pred HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHH
Confidence 136789999997643111 11 1 2578999999999999998765321 11222 3899999999999
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHhhcCchhHHHHHHHHHh---cCCHHHHHHHHhhcccCCCCChhHHHHHhh-hcC-
Q 008394 143 ALKVLGCFLYK-MEKEVWDSAINKLQRIHHPSILQILKISYD---GLDDKEKNIFLDVACFFQGEDVNPVMKFLN-ASG- 216 (567)
Q Consensus 143 ai~~~~~~l~~-~~~~~w~~~~~~l~~~~~~~l~~~l~~s~~---~L~~~~k~~~~~~~~fp~~~~~~~l~~~w~-~~~- 216 (567)
++..++..+.. .+...|.. .+.+.....+..-+...+. .+++..+..+..+|. . . +...+..... ..|
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g~ 318 (357)
T 2fna_A 245 WLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEGI 318 (357)
T ss_dssp HHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcCC
Confidence 99999887643 23333321 1111111112222222221 688899999999998 2 2 5555543221 112
Q ss_pred -CC---chhhhHHHhhcCCeEEecCCcEEehHHHHHHH
Q 008394 217 -FY---PEIGISVLVDKSLIVISNNNKITMHDWLQELG 250 (567)
Q Consensus 217 -~~---~~~~l~~L~~~~lv~~~~~~~~~~H~~v~~~~ 250 (567)
.. ....++.|.+.++|...+..+...|++++++.
T Consensus 319 ~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 319 EISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 22 23459999999999887543444678888764
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.9e-13 Score=118.70 Aligned_cols=126 Identities=23% Similarity=0.114 Sum_probs=73.2
Q ss_pred cCCcEEecCCCccC-CccCCcccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcc-cChhhhccCCCcEEec
Q 008394 426 NKLVILNLRGSKSL-KSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEE-LPSSIELLLRLEYLDL 502 (567)
Q Consensus 426 ~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l 502 (567)
++|+.|++++|.+. +.+|..+..+++|++|++++|..... +.... .+|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444432 24444444444444444444332221 11111 144444444466765 6666777888888888
Q ss_pred CCCccCcc-CcccccCCCCCcEEeccCCCCCcccC---cccCCCCCcceecccc
Q 008394 503 SDCKRLKS-LPSSLCKLKSLEILDLSGCSNLQRLP---ECLGQLSSLGTLLLEK 552 (567)
Q Consensus 503 ~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~~ 552 (567)
++|.+.+. .|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88875542 33668888888888888887654433 3577888888888763
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.8e-13 Score=121.53 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=81.6
Q ss_pred CCceEEEccCCccc--ccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCC
Q 008394 375 EQLVFLEVPNSSIE--QLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFL 452 (567)
Q Consensus 375 ~~L~~L~l~~n~i~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 452 (567)
++|+.|++++|.+. .++..+. .+++|++|++++|.... ...+..+++|++|++++|.+...+|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLIS-----VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCC-----CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCC-----hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 44555555555554 4444333 56666666666665321 1445666667777776666444455545456666
Q ss_pred cEEEcCCCCCCCcCCccccCCCceeeccCccCcccC--hhhhccCCCcEEecCCCccCccCc---ccccCCCCCcEEecc
Q 008394 453 TTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELP--SSIELLLRLEYLDLSDCKRLKSLP---SSLCKLKSLEILDLS 527 (567)
Q Consensus 453 ~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~ 527 (567)
++|++++ |.++.+| ..+..+++|++|++++|++....+ ..+..+++|+.|+++
T Consensus 98 ~~L~Ls~----------------------N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 98 THLNLSG----------------------NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CEEECBS----------------------SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CEEeccC----------------------CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 6666666 5666655 567788888888888887554433 367888888888888
Q ss_pred CCCCC
Q 008394 528 GCSNL 532 (567)
Q Consensus 528 ~~~~~ 532 (567)
+|...
T Consensus 156 ~n~~~ 160 (168)
T 2ell_A 156 DREDQ 160 (168)
T ss_dssp ETTSC
T ss_pred CCChh
Confidence 87543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2.8e-14 Score=156.20 Aligned_cols=145 Identities=21% Similarity=0.171 Sum_probs=78.7
Q ss_pred hccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CC
Q 008394 397 HRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NT 474 (567)
Q Consensus 397 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L 474 (567)
.+.+|+.|+|++|.... .+..+..+++|++|+|++|.+ ..+|..++.+++|++|+|++|... .+|..+.. +|
T Consensus 222 ~l~~L~~L~Ls~n~l~~----l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN----ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSCCSC----CCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred cCCCCcEEECCCCCCCC----CChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 44445555555444221 112233445555555555542 244544555555555555554432 33433322 45
Q ss_pred ceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCC-CcEEeccCCCCCcccCcccCCCCCcceeccccc
Q 008394 475 SCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKS-LEILDLSGCSNLQRLPECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 475 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 553 (567)
++|+|++|.++.+|..|+.+++|++|+|++|++.+.+|..+..+.. +..+++++|...+.+|.. |..|+++.|
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 5555555778888888999999999999999988888877655432 234678888887777754 444555555
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=6e-13 Score=120.94 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=87.4
Q ss_pred eeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh-hhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 355 VKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG-MKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 355 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
-++++++++.++.+|.... .+|++|++++|.+..++.. .+..+++|++|++++|.... ..+..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC---cCHhHcCCcccCCEEEC
Confidence 3678888888888887553 3778888888887777653 34467777777777765422 22345666667777777
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCccc-ChhhhccCCCcEEecCCCccCccCc
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEEL-PSSIELLLRLEYLDLSDCKRLKSLP 512 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p 512 (567)
++|.+.+..|..+..+++|++|+|++ |.++.+ |..+..+++|++|++++|++....+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~----------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYD----------------------NQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCS----------------------SCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCC----------------------CcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77664444445566666666666666 555544 5567778888888888887665543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2.1e-13 Score=118.45 Aligned_cols=105 Identities=26% Similarity=0.264 Sum_probs=64.0
Q ss_pred hccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCce
Q 008394 397 HRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSC 476 (567)
Q Consensus 397 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~ 476 (567)
.+++|++|++++|.... ...+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 40 ~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~----------------- 97 (149)
T 2je0_A 40 EFEELEFLSTINVGLTS-----IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG----------------- 97 (149)
T ss_dssp TCTTCCEEECTTSCCCC-----CTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-----------------
T ss_pred hcCCCcEEECcCCCCCC-----chhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-----------------
Confidence 45555555555553221 13445555666666666554443554444455666666655
Q ss_pred eeccCccCcccC--hhhhccCCCcEEecCCCccCccCc---ccccCCCCCcEEeccC
Q 008394 477 LFLSGTAIEELP--SSIELLLRLEYLDLSDCKRLKSLP---SSLCKLKSLEILDLSG 528 (567)
Q Consensus 477 L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~~ 528 (567)
|.++.+| ..+..+++|++|++++|++.+..+ ..+..+++|+.|++++
T Consensus 98 -----N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 98 -----NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -----SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -----CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6666654 667888888888888887654443 3578888888888753
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=2.6e-13 Score=148.56 Aligned_cols=139 Identities=22% Similarity=0.230 Sum_probs=103.5
Q ss_pred CCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCC
Q 008394 419 PTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLR 496 (567)
Q Consensus 419 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~ 496 (567)
+..+..++.|+.|+|++|. +..+|..++.+++|++|+|++|... .+|..+.. +|++|+|++|.++.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 4567788999999999998 5588888889999999999997655 66665443 888888888888888888888888
Q ss_pred CcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCC-cceeccccccccccch
Q 008394 497 LEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSS-LGTLLLEKPILREYQK 560 (567)
Q Consensus 497 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~l~~~p~ 560 (567)
|++|+|++|.+ +.+|..|+++++|+.|+|++|.+.+.+|..+..+.. +..|++++|.++...+
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 88888888764 477877888888888888888887777776654322 2346777777755433
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=1.3e-12 Score=118.63 Aligned_cols=126 Identities=20% Similarity=0.136 Sum_probs=81.1
Q ss_pred cEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCC--cccCCCCCcEEEcCCCCCCCcCCccccC--CCcee
Q 008394 402 NQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPA--GIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCL 477 (567)
Q Consensus 402 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L 477 (567)
++++++++... ..+ ..+ ..+|++|++++|.+ ..++. .+..+++|++|+|++|......|..+.. +|++|
T Consensus 11 ~~l~~s~~~l~--~ip--~~~--~~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIP--RDI--PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS--SCC--SCC--CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC--cCc--cCC--CCCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 67888877642 222 222 23788888888874 44443 3778888888888886655544544332 67777
Q ss_pred eccCccCcccChh-hhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcc
Q 008394 478 FLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQR 534 (567)
Q Consensus 478 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 534 (567)
++++|.++.++.. +..+++|++|++++|++.+..|..+..+++|+.|++++|++...
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7777777665443 66677777777777766666666666777777777777665543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=3.2e-12 Score=116.13 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=96.5
Q ss_pred eeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecC
Q 008394 355 VKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLR 434 (567)
Q Consensus 355 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 434 (567)
-++++++++.++.+|... .++|++|++++|.+..++..+. ++++|++|++++|.... ..+..|..+++|++|+|+
T Consensus 12 ~~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~-~l~~L~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRIST---LSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGG-GCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhh-cccCCCEEECCCCcCCE---eCHhHccCCCCCCEEECC
Confidence 367889999999998764 4689999999999998885554 88888899888887532 334567788888888888
Q ss_pred CCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccCh-hhhccCCCcEEecCCCccC
Q 008394 435 GSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRL 508 (567)
Q Consensus 435 ~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~ 508 (567)
+|.+....|..+..+++|++|+|++ |.++.+|. .+..+++|++|++++|++.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~----------------------N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHG----------------------NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS----------------------SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCC----------------------CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8885555556677888888888887 55666665 3677788888888877754
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.1e-12 Score=117.35 Aligned_cols=74 Identities=22% Similarity=0.161 Sum_probs=44.6
Q ss_pred ccCcccChh-hhccCCCcEEecCCCccCccCcc--cccCCCCCcEEeccCCCCCcccCcc----cCCCCCcceecccccc
Q 008394 482 TAIEELPSS-IELLLRLEYLDLSDCKRLKSLPS--SLCKLKSLEILDLSGCSNLQRLPEC----LGQLSSLGTLLLEKPI 554 (567)
Q Consensus 482 ~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~ 554 (567)
|.++.+|.. +..+++|++|++++|.+ +.+|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|.
T Consensus 74 N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 74 NRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 555555544 36666666666666654 44454 5666666777777666554 34443 5667777777777766
Q ss_pred ccc
Q 008394 555 LRE 557 (567)
Q Consensus 555 l~~ 557 (567)
+.+
T Consensus 152 ~~~ 154 (176)
T 1a9n_A 152 LKE 154 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.3e-12 Score=116.02 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=82.4
Q ss_pred eEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEc
Q 008394 378 VFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDL 457 (567)
Q Consensus 378 ~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L 457 (567)
+++++++|.+..+|..+. ++|++|++++|... .. +..+..+++|++|++++|.+....+..|..+++|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~--~i--p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFT--LV--PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCC--SC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCc--hh--HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 456777777777765543 35666666666532 11 234556666666666666644433445666666666666
Q ss_pred CCCCCCCcCCccccCCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCC
Q 008394 458 SGCPKLKRLPEISSSNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNL 532 (567)
Q Consensus 458 s~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 532 (567)
++ |.++.+|. .+..+++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus 86 s~----------------------N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SY----------------------NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CS----------------------SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CC----------------------CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 65 66666654 5888888999999888866544445888888899988887764
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=4.9e-12 Score=113.27 Aligned_cols=102 Identities=20% Similarity=0.194 Sum_probs=56.0
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
+.+.++++++.++.+|... .++|++|++++|++..++...+.++++|++|++++|.... ..+..+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS---LPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE---eChhHccCCCccCEEEC
Confidence 3466777777777777543 3567777777777766665554455666666666554321 11223445555555555
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCC
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSG 459 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~ 459 (567)
++|.+.+..+..+..+++|++|++++
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCccccCHHHhhCCcccCEEECcC
Confidence 55553322223344455555555554
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.7e-12 Score=116.12 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=72.6
Q ss_pred CCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcc-cCCCCCc
Q 008394 375 EQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGI-FNLEFLT 453 (567)
Q Consensus 375 ~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~ 453 (567)
.+|+.|++++|.+..++. +....++|++|++++|.... ...+..+++|++|++++|. +..+|+.+ ..+++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-----~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-----LDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-----ECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-----ccccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 344555555555544422 22123366666666665332 1345667777777777776 33445433 6677777
Q ss_pred EEEcCCCCCCCcCCccccCCCceeeccCccCcccCh--hhhccCCCcEEecCCCccCccCccc----ccCCCCCcEEecc
Q 008394 454 TLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS--SIELLLRLEYLDLSDCKRLKSLPSS----LCKLKSLEILDLS 527 (567)
Q Consensus 454 ~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~l~ 527 (567)
+|++++ |.++.+|. .+..+++|++|++++|++. .+|.. +..+++|+.|+++
T Consensus 92 ~L~L~~----------------------N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 92 ELILTN----------------------NSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EEECCS----------------------CCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred EEECCC----------------------CcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 777776 44555554 5666666777777666643 44443 6666677777766
Q ss_pred CCCC
Q 008394 528 GCSN 531 (567)
Q Consensus 528 ~~~~ 531 (567)
+|..
T Consensus 149 ~n~~ 152 (176)
T 1a9n_A 149 KVKL 152 (176)
T ss_dssp ECCH
T ss_pred cCCH
Confidence 6543
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=1.8e-13 Score=147.26 Aligned_cols=176 Identities=15% Similarity=0.044 Sum_probs=105.9
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCCCC-----CC-CCCCceEEEccCCcc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSMPS-----NI-CAEQLVFLEVPNSSI 387 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l~~-----~~-~~~~L~~L~l~~n~i 387 (567)
++|++|++.+|...+.....++. -.. .+++|++|++++|.+..+.. .. .+++|++|++++|.+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~------~~~-----~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHE------LAQ-----HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHH------HHH-----HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred CCCCEEECccccccCcchhHHHH------HHh-----cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 88999999877432221110111 111 24589999999988764432 11 368899999999999
Q ss_pred cccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCC
Q 008394 388 EQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLP 467 (567)
Q Consensus 388 ~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~ 467 (567)
..++..+. ++++|++|+++..............+..+++|+.|+++++. ...+|..+..+++|++|++++|.......
T Consensus 233 ~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LELVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGGHHHHH-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HHHHHHHh-hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 98886655 89999999998644322112333455667788888877754 56666666677788888888776322111
Q ss_pred -c--cccCCCceeeccCccCc--ccChhhhccCCCcEEecC
Q 008394 468 -E--ISSSNTSCLFLSGTAIE--ELPSSIELLLRLEYLDLS 503 (567)
Q Consensus 468 -~--~~~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~ 503 (567)
. ....+|++|+++ +.+. .++.....+++|++|+++
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 1 112255555555 2222 222233445555555555
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=1e-13 Score=149.23 Aligned_cols=135 Identities=16% Similarity=0.086 Sum_probs=89.8
Q ss_pred CCcCCcEEecCCCccCCccCCcccC-CCCCcEEEcCC---CCCCCcCCcc--------ccCCCceeeccCcc--Cc-ccC
Q 008394 424 HLNKLVILNLRGSKSLKSLPAGIFN-LEFLTTLDLSG---CPKLKRLPEI--------SSSNTSCLFLSGTA--IE-ELP 488 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~~p~~l~~-l~~L~~L~Ls~---~~~~~~~~~~--------~~~~L~~L~l~~~~--i~-~lp 488 (567)
.+++|++|++..+.+....+..+.. +++|+.|++++ |+.++..|.. ...+|++|+++.+. ++ ..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4677888887655544444444544 78888888873 3444443321 12388888886532 44 222
Q ss_pred hhh-hccCCCcEEecCCCccCc-cCcccccCCCCCcEEeccCCCCCcc-cCcccCCCCCcceecccccccccc
Q 008394 489 SSI-ELLLRLEYLDLSDCKRLK-SLPSSLCKLKSLEILDLSGCSNLQR-LPECLGQLSSLGTLLLEKPILREY 558 (567)
Q Consensus 489 ~~~-~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~~ 558 (567)
..+ ..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+... ++.....+++|+.|++++|.++..
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 333 347889999999888664 3555567889999999999986433 344446789999999999987653
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=2.6e-11 Score=108.52 Aligned_cols=128 Identities=19% Similarity=0.108 Sum_probs=72.1
Q ss_pred CCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCcee
Q 008394 400 KLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCL 477 (567)
Q Consensus 400 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L 477 (567)
..+.++++++.... .+ . ...++|++|++++|.+.+..+..+..+++|++|++++|......+.... .+|++|
T Consensus 8 ~~~~l~~~~~~l~~--~p--~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS--VP--T--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp ETTEEECCSSCCSS--CC--T--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEecCCCCcc--CC--C--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 35677777775332 21 1 2236888888888885443344567788888888888643322222111 256666
Q ss_pred eccCccCcccChh-hhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCc
Q 008394 478 FLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 478 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
++++|.++.+|.. +..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666666555443 4555666666666555443222234555666666666655443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=9.5e-12 Score=123.30 Aligned_cols=203 Identities=15% Similarity=0.072 Sum_probs=127.5
Q ss_pred CCCeeEEeeCCCCCCC--CCCCCCCCCceEEEccCCcccccchhhhhh--------ccCCcEEecccCccccccCCCCCC
Q 008394 352 FTEVKYLHWHGYPLKS--MPSNICAEQLVFLEVPNSSIEQLWDGMKQH--------RGKLNQIIHATCKMLIAKTPNPTL 421 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~--l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~ 421 (567)
+++|+.|++++|.+.. .+... .+.+..+.+..| .+++..|.+ |++|+.|+|.+ .. .......
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i---~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KI---KNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TC---CEECTTT
T ss_pred hccCeEEecCcceeEEecCcccc-cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cc---cchhHHH
Confidence 4589999999998872 22111 111333333333 344455545 66666666665 21 1122345
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCC-----------------CCC---------cCCc-------
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCP-----------------KLK---------RLPE------- 468 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~-----------------~~~---------~~~~------- 468 (567)
|..|++|+.|++++|.+...-+..|..+.++..+....+. .+. .++.
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 5666666666666665333223444444444444433310 000 0000
Q ss_pred -----------------------cccCCCceeeccCccCcccChh-hhccCCCcEEecCCCccCccCcccccCCCCCc-E
Q 008394 469 -----------------------ISSSNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRLKSLPSSLCKLKSLE-I 523 (567)
Q Consensus 469 -----------------------~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~ 523 (567)
....+|+.+++++|+++.+|.. |.++++|+.+++.+| ....-+..|.++++|+ .
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 0135899999999999999875 899999999999986 3333345689999999 9
Q ss_pred EeccCCCCCcccCcccCCCCCcceeccccccccccchhhhh
Q 008394 524 LDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASSK 564 (567)
Q Consensus 524 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~~ 564 (567)
+++.+ .....-+..|.+|++|+.|++++|.++.+++..|.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 99988 44433456799999999999999999999988774
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=3e-12 Score=135.85 Aligned_cols=120 Identities=27% Similarity=0.247 Sum_probs=88.8
Q ss_pred CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccC--CCceeeccCccCcccChhhhccCCCcEEecCC
Q 008394 427 KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSS--NTSCLFLSGTAIEELPSSIELLLRLEYLDLSD 504 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 504 (567)
.|++|++++|. +..+|. ++.+++|+.|+|++|... .+|..+.. +|++|+|++|.++.+| .++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 46777777776 444665 677777777777776544 55554442 7777777778888888 899999999999999
Q ss_pred CccCccC-cccccCCCCCcEEeccCCCCCcccCcc---cCCCCCcceecc
Q 008394 505 CKRLKSL-PSSLCKLKSLEILDLSGCSNLQRLPEC---LGQLSSLGTLLL 550 (567)
Q Consensus 505 ~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~p~~---l~~l~~L~~L~l 550 (567)
|.+.+.. |..++.+++|+.|++++|++.+..|.. +..+|+|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9877665 888999999999999998876544322 234888888864
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=1.9e-10 Score=108.48 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=110.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF------------------------------ 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------------------------------ 50 (567)
++||+..++.+.+++.... ..+.+.|+|++|+||||+|+.+++.....+
T Consensus 25 ~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 103 (250)
T ss_dssp CCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETT
T ss_pred HhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCc
Confidence 6899999999999996542 234899999999999999999987643211
Q ss_pred -----------------------CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhhhhc-c-CcccEEEcC
Q 008394 51 -----------------------EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQVLRN-W-GVRKIYEME 105 (567)
Q Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~-~-~~~~~~~l~ 105 (567)
+.++++|+++......++.+...+.....+..+|+||+....... + .....++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~ 183 (250)
T 1njg_A 104 SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 183 (250)
T ss_dssp CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCC
Confidence 135566776666666777777766655667888888876542211 1 223579999
Q ss_pred CCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHHHh
Q 008394 106 ALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGCFL 151 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~~l 151 (567)
+++.++..+++...+...+ .+++..+.+++.|+|.|..+..+...+
T Consensus 184 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 184 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999998875432 234578899999999999888776544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=2.4e-13 Score=124.23 Aligned_cols=140 Identities=23% Similarity=0.177 Sum_probs=86.8
Q ss_pred cccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCc
Q 008394 386 SIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKR 465 (567)
Q Consensus 386 ~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~ 465 (567)
.++.++..+. ++++|++|++++|... .. + .+..+++|++|++++|. +..+|..+..+++|++|++++
T Consensus 36 ~l~~l~~~~~-~l~~L~~L~ls~n~l~--~l--~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~------ 102 (198)
T 1ds9_A 36 PIEKMDATLS-TLKACKHLALSTNNIE--KI--S-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY------ 102 (198)
T ss_dssp TCCCCHHHHH-HTTTCSEEECSEEEES--CC--C-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE------
T ss_pred cHhhhhHHHh-cCCCCCEEECCCCCCc--cc--c-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC------
Confidence 3444444443 6666666666666432 11 1 45566666666666665 335565555556666666666
Q ss_pred CCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCc-ccccCCCCCcEEeccCCCCCcccCcc------
Q 008394 466 LPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLP-SSLCKLKSLEILDLSGCSNLQRLPEC------ 538 (567)
Q Consensus 466 ~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~------ 538 (567)
|.++.+| .+..+++|++|++++|.+....+ ..+..+++|+.|++++|+..+..|..
T Consensus 103 ----------------N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 103 ----------------NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp ----------------EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred ----------------CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 6666665 57777888888888777543211 35777888888888887765554442
Q ss_pred ----cCCCCCcceeccccccccc
Q 008394 539 ----LGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 539 ----l~~l~~L~~L~l~~~~l~~ 557 (567)
+..+++|+.|+ ++.++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 66788888877 565544
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.24 E-value=9.4e-11 Score=120.02 Aligned_cols=230 Identities=11% Similarity=0.055 Sum_probs=132.8
Q ss_pred CCCchHHHHHHHHHh-ccc--C--CCeEEEEE--EcCCCChHHHHHHHHHHHHhcc-----CC-ceEEEEc---------
Q 008394 1 MVGVESIVEEIESLL-AVE--S--KDVYCLGI--WGIGGIGKTTIARAIFDKISSD-----FE-GSCFLEN--------- 58 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L-~~~--~--~~~~~i~I--~G~gGvGKTtLa~~~~~~~~~~-----f~-~~~~~~~--------- 58 (567)
|+||++++++|.+.+ ... . ...+.+.| +|++|+||||||+++++.+... +. ..+|+..
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI 103 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHH
Confidence 689999999999988 531 1 23457777 9999999999999999876542 22 2344442
Q ss_pred -------------------------------------------Ccccc------HHHHHHHHhhcCCC---C--CCceEE
Q 008394 59 -------------------------------------------VREES------QDQEESLIESLDWL---T--PVCRII 84 (567)
Q Consensus 59 -------------------------------------------~~~~~------~~~~~~l~~~~~~~---~--~~~~il 84 (567)
++... .+.+..+...+... + .+..+|
T Consensus 104 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI 183 (412)
T 1w5s_A 104 LSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL 183 (412)
T ss_dssp HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEE
Confidence 11100 00011111111101 1 334477
Q ss_pred EEeCChhhhhccC---------cccEEEcCCCCHHHHHHHHHHhhc---cC-CCChHHHHHHHHHcC------CCchHHH
Q 008394 85 ITTRNKQVLRNWG---------VRKIYEMEALEYHHALELFSRHAF---KQ-NHPDELSSKAVKYAQ------GVPLALK 145 (567)
Q Consensus 85 vTtR~~~~~~~~~---------~~~~~~l~~L~~~~~~~l~~~~~~---~~-~~~~~~~~~i~~~c~------glPLai~ 145 (567)
+||+.......+. ....+.+++++.++++++|...+. .. ..+++..+.+++.|+ |.|..+.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~ 263 (412)
T 1w5s_A 184 LVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAI 263 (412)
T ss_dssp EEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHH
T ss_pred EEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHH
Confidence 7887654321111 122399999999999999986643 22 233457889999999 9997666
Q ss_pred HHHHHhc------c---CCHHHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhcccC----CCCChhHHHHHh
Q 008394 146 VLGCFLY------K---MEKEVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVACFF----QGEDVNPVMKFL 212 (567)
Q Consensus 146 ~~~~~l~------~---~~~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp----~~~~~~~l~~~w 212 (567)
.++.... + .+.+.+..+...... ...+...+..||+..+.++..++.+. ..+....+...+
T Consensus 264 ~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~ 337 (412)
T 1w5s_A 264 VALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRY 337 (412)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 5544321 1 133444433332110 23345567789999999999888753 123343332222
Q ss_pred -----hhcCCC------chhhhHHHhhcCCeEEec
Q 008394 213 -----NASGFY------PEIGISVLVDKSLIVISN 236 (567)
Q Consensus 213 -----~~~~~~------~~~~l~~L~~~~lv~~~~ 236 (567)
..-+.. ....++.|.+.|++....
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 338 EDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 112221 124589999999998753
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=4.2e-13 Score=144.47 Aligned_cols=200 Identities=15% Similarity=0.060 Sum_probs=126.1
Q ss_pred CCCeeEEeeCCCCCCC--CCC-CCCCCCceEEEccCCcccc-cchhhhhhccCCcEEecccC--------ccccccCCCC
Q 008394 352 FTEVKYLHWHGYPLKS--MPS-NICAEQLVFLEVPNSSIEQ-LWDGMKQHRGKLNQIIHATC--------KMLIAKTPNP 419 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~--l~~-~~~~~~L~~L~l~~n~i~~-l~~~~~~~l~~L~~L~l~~~--------~~~~~~~~~~ 419 (567)
+++|++|++++|.++. ++. ...+++|++|++++| +.+ -...+...+++|++|+++.| ..+. ... .
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~-~~~-l 364 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT-EQG-L 364 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC-HHH-H
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC-HHH-H
Confidence 4577777877776442 111 113577888888777 332 22223335778888887442 1111 000 0
Q ss_pred CCC-CCCcCCcEEecCCCccCCccCCccc-CCCCCcEEEcC-----CCCCCCcCCcc--------ccCCCceeeccCccC
Q 008394 420 TLI-PHLNKLVILNLRGSKSLKSLPAGIF-NLEFLTTLDLS-----GCPKLKRLPEI--------SSSNTSCLFLSGTAI 484 (567)
Q Consensus 420 ~~~-~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~Ls-----~~~~~~~~~~~--------~~~~L~~L~l~~~~i 484 (567)
..+ ..+++|++|++..+.+....+..+. .+++|+.|+++ +|+.+...|.. ...+|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 001 2378888887766664444344444 48899999999 45555544321 123899999977 55
Q ss_pred cc-cChhhhc-cCCCcEEecCCCccCccCcccc-cCCCCCcEEeccCCCCCcccCc-ccCCCCCcceeccccccc
Q 008394 485 EE-LPSSIEL-LLRLEYLDLSDCKRLKSLPSSL-CKLKSLEILDLSGCSNLQRLPE-CLGQLSSLGTLLLEKPIL 555 (567)
Q Consensus 485 ~~-lp~~~~~-l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l 555 (567)
+. .+..+.. +++|++|++++|.+.+..+..+ ..+++|+.|++++|......+. .+..+++|+.|++++|.+
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 52 2344544 8899999999998655444444 6789999999999988544333 345689999999999987
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=1.1e-10 Score=115.64 Aligned_cols=195 Identities=11% Similarity=0.017 Sum_probs=122.7
Q ss_pred CCCeeEEeeCCCCCCCCCCCCC--CCCceEEEccCCcccccchhhhhhccCCcEEecccCcccc-ccCCCCCCCCCCcCC
Q 008394 352 FTEVKYLHWHGYPLKSMPSNIC--AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLI-AKTPNPTLIPHLNKL 428 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L 428 (567)
+.+|+.+.+.. .++.++...+ +++|+.+++++|.+..+++..+..+.++..+......... ........|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67788888877 7777776543 6778888888888888777777677777766665522100 000111223333333
Q ss_pred c-EEecCCCccCCc------------------------cCCccc-CCCCCcEEEcCCCCCCCcCCccccC---CCceeec
Q 008394 429 V-ILNLRGSKSLKS------------------------LPAGIF-NLEFLTTLDLSGCPKLKRLPEISSS---NTSCLFL 479 (567)
Q Consensus 429 ~-~L~l~~~~~~~~------------------------~p~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~---~L~~L~l 479 (567)
+ .+++.....+.. ....+. .+++|+.|+|++|+ +..+|...+. +|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC
Confidence 3 222221110000 000000 26788888888754 4455544332 7888888
Q ss_pred cCccCcccCh-hhhccCCCc-EEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecc
Q 008394 480 SGTAIEELPS-SIELLLRLE-YLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLL 550 (567)
Q Consensus 480 ~~~~i~~lp~-~~~~l~~L~-~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 550 (567)
..| ++.++. .|.++++|+ .+++.+ .....-+..|.++++|+.+++++|.+..--+..|.++++|+.+..
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 877 888875 489999999 999987 444444567999999999999887766555567899999998863
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=1.4e-10 Score=102.89 Aligned_cols=102 Identities=24% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecC
Q 008394 427 KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLS 503 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 503 (567)
..+++++++|. +..+|..+ .++|++|+|++|......|..+. .+|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35677887776 56677655 36777777777543333232222 1445555555544444432 3444445555554
Q ss_pred CCccCccCcccccCCCCCcEEeccCCCC
Q 008394 504 DCKRLKSLPSSLCKLKSLEILDLSGCSN 531 (567)
Q Consensus 504 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 531 (567)
+|++.+..+..|.++++|+.|++++|++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4443332222344444455555444443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.7e-10 Score=102.63 Aligned_cols=100 Identities=25% Similarity=0.289 Sum_probs=50.2
Q ss_pred CcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc--CCCceeeccCccCcccChh-hhccCCCcEEecCC
Q 008394 428 LVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS--SNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSD 504 (567)
Q Consensus 428 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~ 504 (567)
-+.++++++. ++.+|..+. ++|++|+|++|......|..+. .+|++|+|++|.++.+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3677887776 567776553 7777777777543333232222 1444444444444444433 34444444444444
Q ss_pred CccCccCcccccCCCCCcEEeccCCC
Q 008394 505 CKRLKSLPSSLCKLKSLEILDLSGCS 530 (567)
Q Consensus 505 ~~~~~~~p~~~~~l~~L~~L~l~~~~ 530 (567)
|.+....+..|..+++|+.|++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 44332222224444444444444443
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=4.1e-09 Score=106.67 Aligned_cols=226 Identities=16% Similarity=0.076 Sum_probs=140.6
Q ss_pred CCCchHHHHHHHHHhcc--cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc--------CCceEEEE-------------
Q 008394 1 MVGVESIVEEIESLLAV--ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------FEGSCFLE------------- 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------f~~~~~~~------------- 57 (567)
|+||+++++++.+++.. ..+..+.+.|+|++|+||||+|+.+++.+... ....+|++
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 101 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLS 101 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHH
Confidence 68999999999988865 23445689999999999999999999876332 22334443
Q ss_pred ---------------------------------------cCccccHHH-HHH-HHhhcCCCCCCceEEEEeCChhhhhcc
Q 008394 58 ---------------------------------------NVREESQDQ-EES-LIESLDWLTPVCRIIITTRNKQVLRNW 96 (567)
Q Consensus 58 ---------------------------------------~~~~~~~~~-~~~-l~~~~~~~~~~~~ilvTtR~~~~~~~~ 96 (567)
+++...... .+. +.....+. .+..+|+||+.......+
T Consensus 102 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l 180 (384)
T 2qby_B 102 SLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYM 180 (384)
T ss_dssp HHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTS
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhh
Confidence 221111110 112 22222333 677888888875321111
Q ss_pred ------CcccEEEcCCCCHHHHHHHHHHhhcc----CCCChHHHHHHHHHcC---CCch-HHHHHHHHh--c----cCCH
Q 008394 97 ------GVRKIYEMEALEYHHALELFSRHAFK----QNHPDELSSKAVKYAQ---GVPL-ALKVLGCFL--Y----KMEK 156 (567)
Q Consensus 97 ------~~~~~~~l~~L~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l--~----~~~~ 156 (567)
.....+.+++++.++..+++...+.. ...+++..+.+++.++ |.|. |+..+-.+. . ..+.
T Consensus 181 ~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~ 260 (384)
T 2qby_B 181 EPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRK 260 (384)
T ss_dssp CHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCH
T ss_pred CHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCH
Confidence 11238999999999999999987642 2334457788999998 8887 333333322 1 2377
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhcccCCC-CChh-HHHHHhhhcCCC---c---hhhhHHHhh
Q 008394 157 EVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVACFFQG-EDVN-PVMKFLNASGFY---P---EIGISVLVD 228 (567)
Q Consensus 157 ~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp~~-~~~~-~l~~~w~~~~~~---~---~~~l~~L~~ 228 (567)
+.+..++.... ...+..+++.|++..+..+..++. ... -++. ....+...-|.. . ...+..|..
T Consensus 261 ~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~ 332 (384)
T 2qby_B 261 EHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDM 332 (384)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 77877776543 245777889999988888887776 111 1221 222222222211 1 234888999
Q ss_pred cCCeEEe
Q 008394 229 KSLIVIS 235 (567)
Q Consensus 229 ~~lv~~~ 235 (567)
.|++...
T Consensus 333 ~gli~~~ 339 (384)
T 2qby_B 333 FGIVKIR 339 (384)
T ss_dssp TTSEEEE
T ss_pred CCCEEEE
Confidence 9999874
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=2.6e-09 Score=108.11 Aligned_cols=228 Identities=14% Similarity=0.088 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHhccc--CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC---CceEEEEcCcc--------------
Q 008394 1 MVGVESIVEEIESLLAVE--SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF---EGSCFLENVRE-------------- 61 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f---~~~~~~~~~~~-------------- 61 (567)
|+||+++++++.+++... .+..+.+.|+|++|+||||||+.+++.+...+ ...+|++....
T Consensus 22 ~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l 101 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESL 101 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999752 34556899999999999999999998775543 23444441100
Q ss_pred --------c-cHH---------------------------------HHHHHHhhcCC-CCCCceEEEEeCChhhhhccCc
Q 008394 62 --------E-SQD---------------------------------QEESLIESLDW-LTPVCRIIITTRNKQVLRNWGV 98 (567)
Q Consensus 62 --------~-~~~---------------------------------~~~~l~~~~~~-~~~~~~ilvTtR~~~~~~~~~~ 98 (567)
. ..+ .+..+...... ...+..+|+||+.......+..
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~ 181 (386)
T 2qby_A 102 DVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDP 181 (386)
T ss_dssp SCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCH
Confidence 0 000 11111111111 1234567788876644333211
Q ss_pred -------ccEEEcCCCCHHHHHHHHHHhhcc----CCCChHHHHHHHHHcC---CCchHHHHHHHHhc------c---CC
Q 008394 99 -------RKIYEMEALEYHHALELFSRHAFK----QNHPDELSSKAVKYAQ---GVPLALKVLGCFLY------K---ME 155 (567)
Q Consensus 99 -------~~~~~l~~L~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~c~---glPLai~~~~~~l~------~---~~ 155 (567)
...+.+++++.++..+++...+.. .....+..+.+++.++ |.|..+..+..... + .+
T Consensus 182 ~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~ 261 (386)
T 2qby_A 182 RVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVK 261 (386)
T ss_dssp HHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccC
Confidence 147999999999999999986532 2334457788888888 99985443333221 1 25
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhcccCC-C---CChhHH----HHHhhhcCCC------chh
Q 008394 156 KEVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVACFFQ-G---EDVNPV----MKFLNASGFY------PEI 221 (567)
Q Consensus 156 ~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp~-~---~~~~~l----~~~w~~~~~~------~~~ 221 (567)
.+.+..+..... ...+...+..+|+..+..+..++...+ + +....+ ..+...-|.. ...
T Consensus 262 ~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 334 (386)
T 2qby_A 262 EEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSD 334 (386)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred HHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 666666655432 245677788899888888777774321 1 223222 1111111211 134
Q ss_pred hhHHHhhcCCeEEe
Q 008394 222 GISVLVDKSLIVIS 235 (567)
Q Consensus 222 ~l~~L~~~~lv~~~ 235 (567)
.++.|...|++...
T Consensus 335 ~l~~L~~~gli~~~ 348 (386)
T 2qby_A 335 IINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHTSEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 48899999999864
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.6e-10 Score=101.11 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
+.+.++++++.++.+|... .++|++|++++|.++.+++..+.++++|++|++++|+... ..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEEC
Confidence 5678999999999999766 4889999999999999987776689999999999997532 23445788999999999
Q ss_pred CCCccCCccCCcccCCCCCcEEEcCCCCC
Q 008394 434 RGSKSLKSLPAGIFNLEFLTTLDLSGCPK 462 (567)
Q Consensus 434 ~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~ 462 (567)
++|.+.+..+..+..+++|++|+|++|+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99985444445688899999999999753
No 148
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=2.2e-09 Score=108.67 Aligned_cols=228 Identities=13% Similarity=0.091 Sum_probs=137.9
Q ss_pred CCCchHHHHHHHHHhccc--CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc------CCc--------------------
Q 008394 1 MVGVESIVEEIESLLAVE--SKDVYCLGIWGIGGIGKTTIARAIFDKISSD------FEG-------------------- 52 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------f~~-------------------- 52 (567)
|+||+++++++.+++... .+..+.+.|+|++|+||||+|+.+++..... -..
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 100 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIA 100 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHH
Confidence 689999999999999553 3455689999999999999999998765321 111
Q ss_pred --------------------------------eEEEEcCccccHH--HHHHHHhhcCCC-----CCCceEEEEeCChhhh
Q 008394 53 --------------------------------SCFLENVREESQD--QEESLIESLDWL-----TPVCRIIITTRNKQVL 93 (567)
Q Consensus 53 --------------------------------~~~~~~~~~~~~~--~~~~l~~~~~~~-----~~~~~ilvTtR~~~~~ 93 (567)
++++|+++..... ..+.+...+.+. ..+..+|.||+.....
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~ 180 (387)
T 2v1u_A 101 EAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFV 180 (387)
T ss_dssp HHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTS
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchH
Confidence 2333333333222 233333333332 3456777888765322
Q ss_pred hccC-------cccEEEcCCCCHHHHHHHHHHhhcc----CCCChHHHHHHHHHcC---CCchHHHHH-HHHhc-----c
Q 008394 94 RNWG-------VRKIYEMEALEYHHALELFSRHAFK----QNHPDELSSKAVKYAQ---GVPLALKVL-GCFLY-----K 153 (567)
Q Consensus 94 ~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~c~---glPLai~~~-~~~l~-----~ 153 (567)
..+. ....+.+++++.++..+++...+.. ...+++..+.+++.++ |.|..+..+ ..+.. +
T Consensus 181 ~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~ 260 (387)
T 2v1u_A 181 ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRR 260 (387)
T ss_dssp SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcC
Confidence 2211 1147889999999999999987642 1223336788899998 999433322 22221 1
Q ss_pred ---CCHHHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhcccCCC---CChhHHHH----HhhhcCCCc----
Q 008394 154 ---MEKEVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVACFFQG---EDVNPVMK----FLNASGFYP---- 219 (567)
Q Consensus 154 ---~~~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp~~---~~~~~l~~----~w~~~~~~~---- 219 (567)
.+.+.+..+..... ...+..++..|++..+..+..++....+ +....+.+ .....+..+
T Consensus 261 ~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (387)
T 2v1u_A 261 EERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLR 333 (387)
T ss_dssp CSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred CCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHH
Confidence 26677777666542 2356677899999988887777633222 22232222 222222211
Q ss_pred --hhhhHHHhhcCCeEEe
Q 008394 220 --EIGISVLVDKSLIVIS 235 (567)
Q Consensus 220 --~~~l~~L~~~~lv~~~ 235 (567)
...++.|...|++...
T Consensus 334 ~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 334 RVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCeEEE
Confidence 2348889999999874
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=2e-11 Score=131.35 Aligned_cols=240 Identities=13% Similarity=0.062 Sum_probs=134.9
Q ss_pred ccccCCCeeEEEEeeCCCCCcccccccccccccc--CccccCCCCCCCeeEEeeCCCCCCCCC-CCC--CCCCceEEEcc
Q 008394 309 IDESRINSRVTMIRKNNSGYKCRDNLYNSLENKC--KVSYLEDPRFTEVKYLHWHGYPLKSMP-SNI--CAEQLVFLEVP 383 (567)
Q Consensus 309 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~l~-~~~--~~~~L~~L~l~ 383 (567)
+...+++++.|++.++....... ..+....+.. .+..+ ...+++|++|++++|.+.... ..+ .+++|++|+++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFN-LVPDGWGGYVYPWIEAM-SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHH-HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHhhCCCceEEeccCCCchhhcc-cccccccchhhHHHHHH-HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 34468999999999875211100 0010000000 00000 123569999999998765321 111 36899999999
Q ss_pred CC-ccccc-chhhhhhccCCcEEecccCccccccCC-CCCCCCCCcCCcEEecCCCc--cC-CccCCcccCCCCCcEEEc
Q 008394 384 NS-SIEQL-WDGMKQHRGKLNQIIHATCKMLIAKTP-NPTLIPHLNKLVILNLRGSK--SL-KSLPAGIFNLEFLTTLDL 457 (567)
Q Consensus 384 ~n-~i~~l-~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~--~~-~~~p~~l~~l~~L~~L~L 457 (567)
+| .+... ...+..++++|++|++++|........ .......+++|++|++++|. .. ..++..+..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 99 56541 223334899999999999973210000 11123467899999999886 11 112222345799999999
Q ss_pred CCCCCCCcCCcccc--CCCceeeccCcc-------------------------------CcccChhhhccCCCcEEecCC
Q 008394 458 SGCPKLKRLPEISS--SNTSCLFLSGTA-------------------------------IEELPSSIELLLRLEYLDLSD 504 (567)
Q Consensus 458 s~~~~~~~~~~~~~--~~L~~L~l~~~~-------------------------------i~~lp~~~~~l~~L~~L~l~~ 504 (567)
++|.....++.... .+|++|+++.+. ...+|..+..+++|++|++++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccC
Confidence 99855544443332 267777654331 112333444567777777777
Q ss_pred CccCcc-CcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecc
Q 008394 505 CKRLKS-LPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLL 550 (567)
Q Consensus 505 ~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 550 (567)
|.+... ++..+.++++|+.|++++|.....++.....+++|+.|++
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 763322 2222556777777777776211122222234677777777
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.09 E-value=7.3e-09 Score=104.95 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=138.2
Q ss_pred CCCchHHHHHHHHHhccc----CCCeEEEEEEcCCCChHHHHHHHHHHHHhccC-CceEEEE------------------
Q 008394 1 MVGVESIVEEIESLLAVE----SKDVYCLGIWGIGGIGKTTIARAIFDKISSDF-EGSCFLE------------------ 57 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~----~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f-~~~~~~~------------------ 57 (567)
++||+++++++.+++... .+..+.+.|+|++|+||||+|+.+++...... ...+++.
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 689999999999998652 22234899999999999999999998765431 2233333
Q ss_pred ----------------------------------cCccccHHHHHHHHhhcCCCC----CCceEEEEeCChhhhhccCc-
Q 008394 58 ----------------------------------NVREESQDQEESLIESLDWLT----PVCRIIITTRNKQVLRNWGV- 98 (567)
Q Consensus 58 ----------------------------------~~~~~~~~~~~~l~~~~~~~~----~~~~ilvTtR~~~~~~~~~~- 98 (567)
+++.........+........ .+..+|++|+.......+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 99 NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 222222223333333322111 36677888877644333221
Q ss_pred ------ccEEEcCCCCHHHHHHHHHHhhcc----CCCChHHHHHHHHHc---------CCCchHHHHHHHHhc------c
Q 008394 99 ------RKIYEMEALEYHHALELFSRHAFK----QNHPDELSSKAVKYA---------QGVPLALKVLGCFLY------K 153 (567)
Q Consensus 99 ------~~~~~l~~L~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~c---------~glPLai~~~~~~l~------~ 153 (567)
...+.+++++.++..+++...+.. ..-+++..+.+++.+ +|.|..+..+..... +
T Consensus 179 ~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~ 258 (389)
T 1fnn_A 179 TRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNG 258 (389)
T ss_dssp HHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 136999999999999999987643 223445788999999 788765544433221 1
Q ss_pred ---CCHHHHHHHHHHHhhcCchhHHHHHHHHHhcCCHHHHHHHHhhcccC---CC--CChhHHHHHhh----hcCCCc--
Q 008394 154 ---MEKEVWDSAINKLQRIHHPSILQILKISYDGLDDKEKNIFLDVACFF---QG--EDVNPVMKFLN----ASGFYP-- 219 (567)
Q Consensus 154 ---~~~~~w~~~~~~l~~~~~~~l~~~l~~s~~~L~~~~k~~~~~~~~fp---~~--~~~~~l~~~w~----~~~~~~-- 219 (567)
.+.+....+...... ..+...+..|+...+.++..++.+. .+ .....+...+. ..+...
T Consensus 259 ~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (389)
T 1fnn_A 259 RKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRV 331 (389)
T ss_dssp CSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCC
Confidence 144444444443321 1233456778888888888777654 22 23333333222 222211
Q ss_pred ----hhhhHHHhhcCCeEEec
Q 008394 220 ----EIGISVLVDKSLIVISN 236 (567)
Q Consensus 220 ----~~~l~~L~~~~lv~~~~ 236 (567)
...+..|...|++....
T Consensus 332 ~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 332 HSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEee
Confidence 23489999999998753
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=9.8e-13 Score=120.18 Aligned_cols=113 Identities=24% Similarity=0.166 Sum_probs=79.7
Q ss_pred cccCCCCCcEEEcCCCCCCCcCCcccc-CCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCCCCcE
Q 008394 445 GIFNLEFLTTLDLSGCPKLKRLPEISS-SNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEI 523 (567)
Q Consensus 445 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 523 (567)
.+..+++|++|++++|... .+|.... .+|++|++++|.++.+|..+..+++|++|++++|.+.+ +| .+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCc-cccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 4444555555555544322 2331111 15555555558888899888889999999999998654 66 5889999999
Q ss_pred EeccCCCCCcccC-cccCCCCCcceeccccccccccch
Q 008394 524 LDLSGCSNLQRLP-ECLGQLSSLGTLLLEKPILREYQK 560 (567)
Q Consensus 524 L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~~p~ 560 (567)
|++++|.+...-+ ..+..+++|+.|++++|.+.+.++
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 9999987764222 468899999999999999877643
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=3.1e-09 Score=98.52 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=105.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-------------------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-------------------------------- 48 (567)
++|+++.++++.+++... ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC
T ss_pred HcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc
Confidence 689999999999999654 2334999999999999999999875311
Q ss_pred ----cCCceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhhhh-cc-CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 49 ----DFEGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQVLR-NW-GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 49 ----~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~-~~-~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
.-..++++|++........+.+...+.....+..+|+||+...... .+ ..-..+++++++.++..+++.+.+..
T Consensus 97 ~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 97 PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH
Confidence 1123566777766666666666666655567788898887653211 11 11237899999999999999987743
Q ss_pred C--CCChHHHHHHHHHcCCCchHHHHHHHH
Q 008394 123 Q--NHPDELSSKAVKYAQGVPLALKVLGCF 150 (567)
Q Consensus 123 ~--~~~~~~~~~i~~~c~glPLai~~~~~~ 150 (567)
. .-+++..+.+++.++|.|..+..+...
T Consensus 177 ~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 177 EGVKITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 234457888999999999866554443
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=7.3e-10 Score=98.56 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=83.2
Q ss_pred CeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEEec
Q 008394 354 EVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNL 433 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 433 (567)
.-+.++++++.+..+|..+. ++|++|++++|++..+++..+.++++|++|+|++|+... ..+..+..+++|++|+|
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEEC
Confidence 44789999999999998664 889999999999999977777689999999999997532 22344678899999999
Q ss_pred CCCccCCccCC-cccCCCCCcEEEcCCCC
Q 008394 434 RGSKSLKSLPA-GIFNLEFLTTLDLSGCP 461 (567)
Q Consensus 434 ~~~~~~~~~p~-~l~~l~~L~~L~Ls~~~ 461 (567)
++|.+ ..+|. .+..+++|++|+|++|+
T Consensus 89 ~~N~l-~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 89 NDNHL-KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CSSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence 99884 45554 48889999999999864
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.07 E-value=2.3e-09 Score=108.63 Aligned_cols=196 Identities=8% Similarity=0.043 Sum_probs=96.7
Q ss_pred CCCCCCeeEEeeCCCCCCCCCCCCC-CCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcC
Q 008394 349 DPRFTEVKYLHWHGYPLKSMPSNIC-AEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNK 427 (567)
Q Consensus 349 ~~~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 427 (567)
+..|.+|+.+.+.++.++.++...+ ..+|+.+.+.++ +..++...|.++++|+.+++..+- .......|.. .+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l----~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV----STIGQEAFRE-SG 249 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC----CEECTTTTTT-CC
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc----cCcccccccc-CC
Confidence 3344556666666655555554432 345666666533 555555555556666666665431 1112233433 45
Q ss_pred CcEEecCCCccCCccC-CcccCCCCCcEEEcCCCCCC----CcCCcccc---CCCceeeccCccCcccCh-hhhccCCCc
Q 008394 428 LVILNLRGSKSLKSLP-AGIFNLEFLTTLDLSGCPKL----KRLPEISS---SNTSCLFLSGTAIEELPS-SIELLLRLE 498 (567)
Q Consensus 428 L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~Ls~~~~~----~~~~~~~~---~~L~~L~l~~~~i~~lp~-~~~~l~~L~ 498 (567)
|+.+.+.. + +..++ ..|..+++|+.+++.++... ..++...+ .+|+.+.+. ++++.++. .|.++++|+
T Consensus 250 L~~i~lp~-~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 250 ITTVKLPN-G-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CSEEEEET-T-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred ccEEEeCC-C-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 66666532 2 33332 44555666666666554322 11222111 156666665 33555543 355566666
Q ss_pred EEecCCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCC-Ccceeccccccc
Q 008394 499 YLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLS-SLGTLLLEKPIL 555 (567)
Q Consensus 499 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~l 555 (567)
.+.+..+ ....-+..|.++ +|+.+++.+|......+..|.+++ +++.|.+-.+.+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6666442 222223345555 666666666544433334444443 455565555444
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=3e-09 Score=107.77 Aligned_cols=197 Identities=10% Similarity=0.088 Sum_probs=141.8
Q ss_pred CeeEEeeCCCCCCCCCCCC--CCCCceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCCCcCCcEE
Q 008394 354 EVKYLHWHGYPLKSMPSNI--CAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVIL 431 (567)
Q Consensus 354 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 431 (567)
+|+.+.+.. .++.++... .+.+|+.+++++|++..++...+ .+.+|+.+.+..+- .......|..+++|+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp~~l----~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLPVTL----KEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECCTTC----CEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-eecccCEEEeCCch----heehhhHhhCCCCCCEE
Confidence 677787765 566666544 36889999999999999999888 57899999987552 22335678889999999
Q ss_pred ecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCcccc---CCCceeeccCccCc-----ccCh-hhhccCCCcEEec
Q 008394 432 NLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISS---SNTSCLFLSGTAIE-----ELPS-SIELLLRLEYLDL 502 (567)
Q Consensus 432 ~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~---~~L~~L~l~~~~i~-----~lp~-~~~~l~~L~~L~l 502 (567)
++..+ +..++.....-.+|+.+.+..+ +..++...+ .+|+.+.+.++.+. .++. .|.++++|+.+.+
T Consensus 232 ~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 232 EIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 99764 4555543333388999998542 344443332 38999999887665 5654 5889999999999
Q ss_pred CCCccCccCcccccCCCCCcEEeccCCCCCcccCcccCCCCCcceeccccccccccchhhh
Q 008394 503 SDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 503 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
.+ .....-...|.++++|+.+.+..+ ...--...|.++ +|+.+.+.+|.+..+++..+
T Consensus 308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 308 PE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp CT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred CC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 85 333333456889999999999663 333334568888 99999999998877776654
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=3.3e-11 Score=121.04 Aligned_cols=179 Identities=13% Similarity=0.083 Sum_probs=96.6
Q ss_pred CCeeEEeeCCCCCCCCCC-----CC--CCCCceEEEccCCccccc-chhhhhhccCCcEEecccCccccccCCCCCCC--
Q 008394 353 TEVKYLHWHGYPLKSMPS-----NI--CAEQLVFLEVPNSSIEQL-WDGMKQHRGKLNQIIHATCKMLIAKTPNPTLI-- 422 (567)
Q Consensus 353 ~~L~~L~l~~~~~~~l~~-----~~--~~~~L~~L~l~~n~i~~l-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-- 422 (567)
++|+.|++++|.+..... .. ..++|++|++++|.+.+. ...+...+++|++|+|++|..... ....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~---~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE---ACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH---HHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH---HHHHHHH
Confidence 467777777777654221 11 124677777777766542 222233455666666666643110 00001
Q ss_pred ---CCCcCCcEEecCCCccCC----ccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCc-----ccChh
Q 008394 423 ---PHLNKLVILNLRGSKSLK----SLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIE-----ELPSS 490 (567)
Q Consensus 423 ---~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~lp~~ 490 (567)
...++|++|+|++|.+.. .++..+...++|++|+|++ |.++ .++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~----------------------N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH----------------------TGLGDEGLELLAAQ 206 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT----------------------SSCHHHHHHHHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC----------------------CCCCcHHHHHHHHH
Confidence 123456666666655321 1233334455555555555 5544 34556
Q ss_pred hhccCCCcEEecCCCccCcc----CcccccCCCCCcEEeccCCCCCcccCcccCCC---CC--cceec--ccccccc
Q 008394 491 IELLLRLEYLDLSDCKRLKS----LPSSLCKLKSLEILDLSGCSNLQRLPECLGQL---SS--LGTLL--LEKPILR 556 (567)
Q Consensus 491 ~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l---~~--L~~L~--l~~~~l~ 556 (567)
+...++|++|++++|.+... ++..+...++|++|++++|.+.......+..+ .. |+.+. +..+.+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 77788999999999886542 34446677899999999988765443333222 21 66666 5555443
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.7e-08 Score=99.32 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=100.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-------------------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-------------------------------- 48 (567)
++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+.+++.+..
T Consensus 23 ~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK 100 (323)
T ss_dssp CCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBC
T ss_pred HHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhcc
Confidence 689999999999999643 3334999999999999999999765311
Q ss_pred -cC----CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhhh-hcc-CcccEEEcCCCCHHHHHHHHHHhhc
Q 008394 49 -DF----EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQVL-RNW-GVRKIYEMEALEYHHALELFSRHAF 121 (567)
Q Consensus 49 -~f----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~-~~~-~~~~~~~l~~L~~~~~~~l~~~~~~ 121 (567)
.| ..++++++++.......+.+...+.....++.+|+||+..... ..+ .....+++.+++.++..+++...+.
T Consensus 101 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHH
Confidence 11 2355666666655555555555554445677888888764321 111 2224799999999999999998764
Q ss_pred cC--CCChHHHHHHHHHcCCCchHHHH
Q 008394 122 KQ--NHPDELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 122 ~~--~~~~~~~~~i~~~c~glPLai~~ 146 (567)
.. .-+++..+.+++.++|.|..+..
T Consensus 181 ~~~~~~~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 181 LEDVKYTNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp HHTCCBCHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 32 23345788999999999955443
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=4.6e-08 Score=96.42 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=107.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD------------------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------------------------------- 49 (567)
++|+++.++.+.+++..+ ..+.+.|+|++|+||||+|+.+++.+...
T Consensus 27 ~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK 104 (327)
T ss_dssp CCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSC
T ss_pred hhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhC
Confidence 589999999999999654 33459999999999999999997653110
Q ss_pred -C----CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhhh-hcc-CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 50 -F----EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQVL-RNW-GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 50 -f----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~-~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
+ ..++++|++........+.|...+.....++++|+||...... ..+ .....+++.+++.++..+++...+..
T Consensus 105 ~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 105 PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHh
Confidence 1 3456677777766667777777666666778888888765321 111 11237899999999999999987754
Q ss_pred CC--CChHHHHHHHHHcCCCchHHHHHHHHh
Q 008394 123 QN--HPDELSSKAVKYAQGVPLALKVLGCFL 151 (567)
Q Consensus 123 ~~--~~~~~~~~i~~~c~glPLai~~~~~~l 151 (567)
.+ -+++..+.+++.++|.|..+..+....
T Consensus 185 ~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 185 EGLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 33 344578899999999998766554443
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=9.6e-11 Score=117.62 Aligned_cols=191 Identities=11% Similarity=-0.061 Sum_probs=113.3
Q ss_pred CCeeEEEEeeCCCCCccccccccccccccCccccCCCCCCCeeEEeeCCCCCCCC--CCCC-CCCCceEEEccCCccccc
Q 008394 314 INSRVTMIRKNNSGYKCRDNLYNSLENKCKVSYLEDPRFTEVKYLHWHGYPLKSM--PSNI-CAEQLVFLEVPNSSIEQL 390 (567)
Q Consensus 314 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~l--~~~~-~~~~L~~L~l~~n~i~~l 390 (567)
++++.|++++|.+.......+.. .+... ..+|+.|++++|.+... .... .+++|+.|++++|.+.+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~------~L~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAA------VLGSG----RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHH------HHSSC----SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHH------HHhhC----CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 89999999888755543333333 12211 25899999999987542 1111 256799999999988754
Q ss_pred chh-----hhhhccCCcEEecccCccccccC-CCCCCCCCCcCCcEEecCCCccCC----ccCCcccCCCCCcEEEcCCC
Q 008394 391 WDG-----MKQHRGKLNQIIHATCKMLIAKT-PNPTLIPHLNKLVILNLRGSKSLK----SLPAGIFNLEFLTTLDLSGC 460 (567)
Q Consensus 391 ~~~-----~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~Ls~~ 460 (567)
... +....++|++|+|++|....... .....+..+++|++|+|++|.+.. .++..+...++|++|+|++|
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 322 22246789999999986421000 001122457789999999988432 23455666778888888885
Q ss_pred CCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCC---C--CCcEEe--ccCCCC
Q 008394 461 PKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKL---K--SLEILD--LSGCSN 531 (567)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l---~--~L~~L~--l~~~~~ 531 (567)
.... .+...++..+...++|++|++++|.+...-...+..+ . .|+.+. +..+..
T Consensus 222 ~i~~-----------------~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 222 GAGD-----------------TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CCCH-----------------HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CCCH-----------------HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 3211 1112445556777889999999988654433333222 2 266665 555443
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.84 E-value=1.6e-07 Score=92.50 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=134.8
Q ss_pred CCCchHHHHHHHHHhccc---CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc------------------------CCce
Q 008394 1 MVGVESIVEEIESLLAVE---SKDVYCLGIWGIGGIGKTTIARAIFDKISSD------------------------FEGS 53 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------------------------f~~~ 53 (567)
|+|++..++++.+++... ......+.|+|++|+|||++|+.+++..... -..+
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 93 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDI 93 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCE
T ss_pred hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCE
Confidence 689999999999888531 2234579999999999999999998753211 2346
Q ss_pred EEEEcCccccHHHHHHHHhhcCCCC------------------CCceEEEEeCChhh-hhccC--cccEEEcCCCCHHHH
Q 008394 54 CFLENVREESQDQEESLIESLDWLT------------------PVCRIIITTRNKQV-LRNWG--VRKIYEMEALEYHHA 112 (567)
Q Consensus 54 ~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~ilvTtR~~~~-~~~~~--~~~~~~l~~L~~~~~ 112 (567)
+++|++........+.+...+.... ++..+|.||..... ...+. ....+.+.+++.++.
T Consensus 94 l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~ 173 (324)
T 1hqc_A 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 173 (324)
T ss_dssp EEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHH
T ss_pred EEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHH
Confidence 7778877766655555554432210 23456666654422 11111 124799999999999
Q ss_pred HHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHHHHHhcc---------CCHHHHHHHHHHHhhcCchhHHHHHHHH
Q 008394 113 LELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVLGCFLYK---------MEKEVWDSAINKLQRIHHPSILQILKIS 181 (567)
Q Consensus 113 ~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~~~~l~~---------~~~~~w~~~~~~l~~~~~~~l~~~l~~s 181 (567)
.+++.+.+... .-+++..+.+++.++|.|..+..+...+.. .+.+....+...+. ..
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~------------~~ 241 (324)
T 1hqc_A 174 AQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG------------LD 241 (324)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT------------CC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc------------cc
Confidence 99998887533 234557889999999999887766554421 13444444333321 12
Q ss_pred HhcCCHHHHHHHHhhcc-cCCC-CChhHHHHHhhhcCCCchhhhHH-HhhcCCeEEecCCc
Q 008394 182 YDGLDDKEKNIFLDVAC-FFQG-EDVNPVMKFLNASGFYPEIGISV-LVDKSLIVISNNNK 239 (567)
Q Consensus 182 ~~~L~~~~k~~~~~~~~-fp~~-~~~~~l~~~w~~~~~~~~~~l~~-L~~~~lv~~~~~~~ 239 (567)
+..++...+..+..+.. |..+ +....+.+.+.-..-.....++. +++.+++.....+.
T Consensus 242 ~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 242 ELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp TTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc
Confidence 34466666666555442 3222 33444433321111111112333 77889988764333
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=1.5e-08 Score=100.90 Aligned_cols=58 Identities=21% Similarity=0.101 Sum_probs=35.1
Q ss_pred CceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCC
Q 008394 474 TSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNL 532 (567)
Q Consensus 474 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 532 (567)
|++|+|++|.++.+|+ .|.++++|++|+|++|++....+..+..++ |+.|++.+|++.
T Consensus 58 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 3333333366666544 467778888888887775543333344444 778887777654
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.73 E-value=4.8e-07 Score=89.63 Aligned_cols=231 Identities=18% Similarity=0.195 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHhccc---CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-----------------------CCceE
Q 008394 1 MVGVESIVEEIESLLAVE---SKDVYCLGIWGIGGIGKTTIARAIFDKISSD-----------------------FEGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-----------------------f~~~~ 54 (567)
++|++..++++..++... ......|.|+|++|+|||++|+.+++..... -..++
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 110 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDIL 110 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEE
T ss_pred hCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEE
Confidence 689999999999988653 3445579999999999999999998753221 13577
Q ss_pred EEEcCccccHHHHHHHHhhcCCCC------------------CCceEEEEeCChhhh-hcc--CcccEEEcCCCCHHHHH
Q 008394 55 FLENVREESQDQEESLIESLDWLT------------------PVCRIIITTRNKQVL-RNW--GVRKIYEMEALEYHHAL 113 (567)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~ilvTtR~~~~~-~~~--~~~~~~~l~~L~~~~~~ 113 (567)
++|++........+.+...+.... ++..+|.+|...... ..+ .....+.+++++.++..
T Consensus 111 ~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~ 190 (338)
T 3pfi_A 111 FIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELA 190 (338)
T ss_dssp EEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred EEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHH
Confidence 888888877766666665443211 124555555543221 111 12357999999999999
Q ss_pred HHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHHHHhc------c---CCHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 008394 114 ELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLGCFLY------K---MEKEVWDSAINKLQRIHHPSILQILKISY 182 (567)
Q Consensus 114 ~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~~l~------~---~~~~~w~~~~~~l~~~~~~~l~~~l~~s~ 182 (567)
+++.+.+.... .+++..+.+++.+.|.|-.+..+...+. + .+.+....++... ..+.
T Consensus 191 ~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~ 258 (338)
T 3pfi_A 191 LILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL------------GVNE 258 (338)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH------------TCCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh------------CCcc
Confidence 99998875433 2445778889999999965554433321 1 1333333333221 1122
Q ss_pred hcCCHHHHHHHHhhcccCCC--CChhHHHHHhhhcCCCchhhhH-HHhhcCCeEEecCCcEEehH
Q 008394 183 DGLDDKEKNIFLDVACFFQG--EDVNPVMKFLNASGFYPEIGIS-VLVDKSLIVISNNNKITMHD 244 (567)
Q Consensus 183 ~~L~~~~k~~~~~~~~fp~~--~~~~~l~~~w~~~~~~~~~~l~-~L~~~~lv~~~~~~~~~~H~ 244 (567)
..++...+..+..++-. .+ ..+..+........-.....++ .|++.+++.....+.+....
T Consensus 259 ~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~ 322 (338)
T 3pfi_A 259 LGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAK 322 (338)
T ss_dssp TCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHH
T ss_pred cCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHH
Confidence 23444444455444443 22 2334433332211111122355 78899999887655554433
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.71 E-value=3.3e-07 Score=92.10 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=104.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF------------------------------ 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------------------------------ 50 (567)
++|+++.++.+.+.+..+. ....+.|+|++|+||||+|+.+.+.+....
T Consensus 18 ~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 (373)
T ss_dssp SCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETT
T ss_pred ccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccc
Confidence 6899999999999996542 234789999999999999999987652210
Q ss_pred -----------------------CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhh-hhcc-CcccEEEcC
Q 008394 51 -----------------------EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQV-LRNW-GVRKIYEME 105 (567)
Q Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~-~~~~-~~~~~~~l~ 105 (567)
..++++|++........+.+...+.....+..+|++|..... ...+ .....+++.
T Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 176 (373)
T 1jr3_A 97 SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 (373)
T ss_dssp CSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred ccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCC
Confidence 124556666665556667777666655566777777765432 1111 223579999
Q ss_pred CCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCchHHHHHHH
Q 008394 106 ALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 106 ~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
+++.++..+++...+... ..+++..+.+++.++|.|..+..+..
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999998876432 23344678899999999988776543
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=2.6e-08 Score=99.15 Aligned_cols=105 Identities=19% Similarity=0.101 Sum_probs=87.2
Q ss_pred cEEEcCCCCCCCcCCccccC--CCceeeccC-ccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccC
Q 008394 453 TTLDLSGCPKLKRLPEISSS--NTSCLFLSG-TAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSG 528 (567)
Q Consensus 453 ~~L~Ls~~~~~~~~~~~~~~--~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 528 (567)
..+++++++.+..+|. +.. +|++|+|++ |.++.+|. .|..+++|++|+|++|.+.+..|..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3568888757778888 554 799999996 99999884 699999999999999998887888899999999999999
Q ss_pred CCCCcccCcccCCCCCcceeccccccccccc
Q 008394 529 CSNLQRLPECLGQLSSLGTLLLEKPILREYQ 559 (567)
Q Consensus 529 ~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~p 559 (567)
|.+....+..+..++ |+.|+|.+|.+....
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 887754444555555 999999999887544
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=6.4e-07 Score=87.80 Aligned_cols=147 Identities=13% Similarity=0.167 Sum_probs=104.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-------------------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-------------------------------- 48 (567)
++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (319)
T ss_dssp SCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSC
T ss_pred HhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcC
Confidence 589999999999998543 3345999999999999999999765310
Q ss_pred cC----CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhh-hhcc-CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 49 DF----EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQV-LRNW-GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 49 ~f----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~-~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
.| ..+++++++........+.+...+.....+..+|+||..... ...+ .....+++.+++.++..+++...+..
T Consensus 97 ~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 97 PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHH
Confidence 01 235667777666666677777777666667788888766531 1111 12247999999999999999987754
Q ss_pred CC--CChHHHHHHHHHcCCCchHHHHHHH
Q 008394 123 QN--HPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 123 ~~--~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
.+ -+++..+.+++.++|.|..+.....
T Consensus 177 ~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 177 EGVKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCCCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 2445778899999999976554443
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=1.3e-08 Score=101.30 Aligned_cols=150 Identities=16% Similarity=0.089 Sum_probs=85.4
Q ss_pred hccCCcEEecccCccccccCCCCCCCCCCcCCcEEecCCCccCCccCCccc--CCCCCcEEEcCCCCC-------CCcCC
Q 008394 397 HRGKLNQIIHATCKMLIAKTPNPTLIPHLNKLVILNLRGSKSLKSLPAGIF--NLEFLTTLDLSGCPK-------LKRLP 467 (567)
Q Consensus 397 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l~~L~~L~Ls~~~~-------~~~~~ 467 (567)
.+|+|+.|+|++|.... .+ .+ .+++|+.|++..|.+.......+. .+|+|+.|+|+.+.. ...+.
T Consensus 170 ~~P~L~~L~L~g~~~l~--l~---~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS--IG---KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTCB--CC---SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCce--ec---cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 78899999998874322 21 13 378999999988774433323333 689999999864211 11111
Q ss_pred ----ccccCCCceeeccCccCcc-cChhh---hccCCCcEEecCCCccCcc----CcccccCCCCCcEEeccCCCCCccc
Q 008394 468 ----EISSSNTSCLFLSGTAIEE-LPSSI---ELLLRLEYLDLSDCKRLKS----LPSSLCKLKSLEILDLSGCSNLQRL 535 (567)
Q Consensus 468 ----~~~~~~L~~L~l~~~~i~~-lp~~~---~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~ 535 (567)
...+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.+... ++..+.++++|+.|++++|.+....
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 1123477777777766652 22222 2466777777777664432 3334456677777777776654333
Q ss_pred CcccCC-CCCcceecccccc
Q 008394 536 PECLGQ-LSSLGTLLLEKPI 554 (567)
Q Consensus 536 p~~l~~-l~~L~~L~l~~~~ 554 (567)
...+.. + ...++++.+.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 222322 2 2445666554
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=5.7e-08 Score=96.62 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=90.1
Q ss_pred CCCeeEEeeCCCCCCCCCCCCCCCCceEEEccCCcccccchh-hh-hhccCCcEEecccCccccc-c-----CCCCCCCC
Q 008394 352 FTEVKYLHWHGYPLKSMPSNICAEQLVFLEVPNSSIEQLWDG-MK-QHRGKLNQIIHATCKMLIA-K-----TPNPTLIP 423 (567)
Q Consensus 352 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~i~~l~~~-~~-~~l~~L~~L~l~~~~~~~~-~-----~~~~~~~~ 423 (567)
+++|+.|.+.++.-..++. ...++|+.|++..|.+..-.-. +. ..+++|++|+|+.+..... . ........
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 4599999998884334444 3478899999998887642221 21 2578999998864321100 0 00000112
Q ss_pred CCcCCcEEecCCCccCCccCCcc---cCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEE
Q 008394 424 HLNKLVILNLRGSKSLKSLPAGI---FNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYL 500 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 500 (567)
.+|+|++|++++|.+....+..+ ..+++|++|+|+.|.... .+...++..+..+++|+.|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d-----------------~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD-----------------EGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH-----------------HHHHHHHTTHHHHTTCSEE
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh-----------------HHHHHHHhhcccCCcceEE
Confidence 46777777777776433222212 246677777776642111 1111345556778889999
Q ss_pred ecCCCccCccCcccccC-CCCCcEEeccCCC
Q 008394 501 DLSDCKRLKSLPSSLCK-LKSLEILDLSGCS 530 (567)
Q Consensus 501 ~l~~~~~~~~~p~~~~~-l~~L~~L~l~~~~ 530 (567)
++++|.+....-..+.. + ...+++++++
T Consensus 313 ~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99888755433222322 2 3567777755
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.49 E-value=1.9e-05 Score=77.68 Aligned_cols=236 Identities=17% Similarity=0.220 Sum_probs=130.1
Q ss_pred CCCchHHHHHHHHHhccc---CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-----------------------CCceE
Q 008394 1 MVGVESIVEEIESLLAVE---SKDVYCLGIWGIGGIGKTTIARAIFDKISSD-----------------------FEGSC 54 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-----------------------f~~~~ 54 (567)
++|.+..++.+...+... ......+.|+|++|+||||||+.++..+... -..++
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~ 106 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEE
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEE
Confidence 478888888887777542 2234579999999999999999998764111 12466
Q ss_pred EEEcCccccHHHHHHHHhhcCCCC--------C----------CceE-EEEeCChhhhhcc--CcccEEEcCCCCHHHHH
Q 008394 55 FLENVREESQDQEESLIESLDWLT--------P----------VCRI-IITTRNKQVLRNW--GVRKIYEMEALEYHHAL 113 (567)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~--------~----------~~~i-lvTtR~~~~~~~~--~~~~~~~l~~L~~~~~~ 113 (567)
+++.+........+.+........ . .-.+ -.|++...+.... .......+++.+.++..
T Consensus 107 ~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~ 186 (334)
T 1in4_A 107 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELK 186 (334)
T ss_dssp EEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred EEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHH
Confidence 788777665555555543221110 0 1112 2344433222111 11235889999999999
Q ss_pred HHHHHhhcc--CCCChHHHHHHHHHcCCCchHHHHHHHHhc------c---CCHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 008394 114 ELFSRHAFK--QNHPDELSSKAVKYAQGVPLALKVLGCFLY------K---MEKEVWDSAINKLQRIHHPSILQILKISY 182 (567)
Q Consensus 114 ~l~~~~~~~--~~~~~~~~~~i~~~c~glPLai~~~~~~l~------~---~~~~~w~~~~~~l~~~~~~~l~~~l~~s~ 182 (567)
+++.+.+.. ...+++.+..|+++++|.|-.+..+...+. + .+.+..+.++..+..+.
T Consensus 187 ~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~------------ 254 (334)
T 1in4_A 187 EIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD------------ 254 (334)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT------------
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc------------
Confidence 999987642 334455789999999999976554433221 1 14444444444432111
Q ss_pred hcCCHHHHHHHHhhc-ccCCC-CChhHHHHHhhhcCCCchhhhH-HHhhcCCeEEecCCcEEehHHHHH
Q 008394 183 DGLDDKEKNIFLDVA-CFFQG-EDVNPVMKFLNASGFYPEIGIS-VLVDKSLIVISNNNKITMHDWLQE 248 (567)
Q Consensus 183 ~~L~~~~k~~~~~~~-~fp~~-~~~~~l~~~w~~~~~~~~~~l~-~L~~~~lv~~~~~~~~~~H~~v~~ 248 (567)
..++...+..+..+. .|..+ ...+.+......+....+...+ .|...|+++....+.+....-...
T Consensus 255 ~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~~~~~ 323 (334)
T 1in4_A 255 EGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAYKH 323 (334)
T ss_dssp TCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhHHHHHH
Confidence 133444333333222 23211 2333333332222111111122 788999999887766655544333
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=4.7e-06 Score=82.90 Aligned_cols=146 Identities=14% Similarity=0.164 Sum_probs=99.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc--C----------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD--F---------------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--f---------------------------- 50 (567)
++|+++.++.+..++..+. .+.+.|+|++|+||||+|+.+.+.+... +
T Consensus 39 i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARL 116 (353)
T ss_dssp CCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHS
T ss_pred hhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhh
Confidence 5899999999999995442 2348999999999999999997653210 0
Q ss_pred -----------------CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChhh-hhcc-CcccEEEcCCCCHHH
Q 008394 51 -----------------EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQV-LRNW-GVRKIYEMEALEYHH 111 (567)
Q Consensus 51 -----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~-~~~~-~~~~~~~l~~L~~~~ 111 (567)
..++++|++........+.+...+.......++|++|..... ...+ .....+.+.+++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~ 196 (353)
T 1sxj_D 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASN 196 (353)
T ss_dssp CCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHH
T ss_pred cccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHH
Confidence 014555555555555555565555444556677777755431 1111 112378999999999
Q ss_pred HHHHHHHhhccCC--CChHHHHHHHHHcCCCchHHHHHH
Q 008394 112 ALELFSRHAFKQN--HPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 112 ~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
..+.+...+...+ -+++..+.+++.++|.|..+..+.
T Consensus 197 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 197 AIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999998764432 445578999999999998655443
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=6.5e-07 Score=83.81 Aligned_cols=143 Identities=12% Similarity=0.172 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC------------------------CceEEEEcCc
Q 008394 5 ESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF------------------------EGSCFLENVR 60 (567)
Q Consensus 5 ~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------------------------~~~~~~~~~~ 60 (567)
+..++.+.++.... ..+.+.|+|++|+||||+|+.+++...... ..++++|++.
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~ 114 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVD 114 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGG
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 35666777766432 446899999999999999999988654221 2345566655
Q ss_pred cccHHH--HHHHHhhcCCC-CCCc-eEEEEeCChhh---------hhccCcccEEEcCCCCHHHHHHHHHHhhccC--CC
Q 008394 61 EESQDQ--EESLIESLDWL-TPVC-RIIITTRNKQV---------LRNWGVRKIYEMEALEYHHALELFSRHAFKQ--NH 125 (567)
Q Consensus 61 ~~~~~~--~~~l~~~~~~~-~~~~-~ilvTtR~~~~---------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~ 125 (567)
...... .+.+...+... ..+. .+|+||+.... ...+.....+++++++.++..+++...+... .-
T Consensus 115 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~ 194 (242)
T 3bos_A 115 AVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL 194 (242)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 443222 33333322211 1222 47777764321 1111112579999999999999999877432 23
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHH
Q 008394 126 PDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 126 ~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
+++..+.+++.++|.+-.+..+..
T Consensus 195 ~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 195 PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHccCCHHHHHHHHH
Confidence 455788899999998866654433
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=2.2e-06 Score=85.92 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=96.6
Q ss_pred CCCchHHHHHH---HHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC---------------------------
Q 008394 1 MVGVESIVEEI---ESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF--------------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l---~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f--------------------------- 50 (567)
|+|++..++.+ .+.+.......+.+.|+|++|+|||++|+.+.+.+....
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHH
Confidence 57889887764 444433333336899999999999999999998754211
Q ss_pred ----------------------------------------------------------------CceEEEEcCccccHHH
Q 008394 51 ----------------------------------------------------------------EGSCFLENVREESQDQ 66 (567)
Q Consensus 51 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 66 (567)
++++++|++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~ 205 (368)
T 3uk6_A 126 SIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIES 205 (368)
T ss_dssp SBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHH
T ss_pred HHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHH
Confidence 1377888888877777
Q ss_pred HHHHHhhcCCCCCCceEEEEeCC-h------------hhhhcc-CcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHH
Q 008394 67 EESLIESLDWLTPVCRIIITTRN-K------------QVLRNW-GVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELS 130 (567)
Q Consensus 67 ~~~l~~~~~~~~~~~~ilvTtR~-~------------~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~ 130 (567)
.+.+...+...... .++++|.. . .+...+ ..-..+.+++++.++..+++...+... .-+++..
T Consensus 206 ~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l 284 (368)
T 3uk6_A 206 FSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAY 284 (368)
T ss_dssp HHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 77777776554333 34444431 1 000011 111358999999999999999877542 2344578
Q ss_pred HHHHHHcC-CCchHHHHHH
Q 008394 131 SKAVKYAQ-GVPLALKVLG 148 (567)
Q Consensus 131 ~~i~~~c~-glPLai~~~~ 148 (567)
+.+++.+. |.|-.+..+.
T Consensus 285 ~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 285 TVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHH
Confidence 88889887 7776554433
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.41 E-value=3.2e-06 Score=81.38 Aligned_cols=146 Identities=22% Similarity=0.298 Sum_probs=92.3
Q ss_pred CCCchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc--------------------
Q 008394 1 MVGVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD-------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-------------------- 49 (567)
++|.++.+++|.+.+... ....+.+.|+|++|+|||++|+.+++.....
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~ 98 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASL 98 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHH
Confidence 579999999999887431 1334579999999999999999998753211
Q ss_pred -----------CCceEEEEcCcccc--------------HHHHHHHHhhcCC--CCCCceEEEEeCChhhhhc-c----C
Q 008394 50 -----------FEGSCFLENVREES--------------QDQEESLIESLDW--LTPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 50 -----------f~~~~~~~~~~~~~--------------~~~~~~l~~~~~~--~~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
-+.++++|++.... ...+..+...... ...+..||.||........ . .
T Consensus 99 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~R 178 (285)
T 3h4m_A 99 VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGR 178 (285)
T ss_dssp HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTS
T ss_pred HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCc
Confidence 12477888775431 1233333333322 2235567777775533221 0 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCC-CchHHHH
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQG-VPLALKV 146 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~g-lPLai~~ 146 (567)
....+.+++.+.++..+++...+.......+ ....+++.+.| .|-.|..
T Consensus 179 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 2247899999999999999988754432222 35677888777 4434443
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=4.2e-06 Score=87.66 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=103.6
Q ss_pred CCCchHHHHHHHHHhcccC---------------CCeEEEEEEcCCCChHHHHHHHHHHHHhc-----------------
Q 008394 1 MVGVESIVEEIESLLAVES---------------KDVYCLGIWGIGGIGKTTIARAIFDKISS----------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~---------------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~----------------- 48 (567)
++|+++.+++|.+++.... +..+.+.|+|++|+||||+|+.+++.+..
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~ 120 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLN 120 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHH
Confidence 5899999999999996511 13468999999999999999999875310
Q ss_pred --------------------------cCCceEEEEcCccccH---HHHHHHHhhcCCCCCCceEEEEeCChh---hhhcc
Q 008394 49 --------------------------DFEGSCFLENVREESQ---DQEESLIESLDWLTPVCRIIITTRNKQ---VLRNW 96 (567)
Q Consensus 49 --------------------------~f~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ilvTtR~~~---~~~~~ 96 (567)
.-..++++|++..... ..+..+...... .+..||+++.... .....
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~ 198 (516)
T 1sxj_A 121 AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFD 198 (516)
T ss_dssp HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGT
T ss_pred HHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhH
Confidence 1123556665544332 112223222211 2344666655432 11111
Q ss_pred CcccEEEcCCCCHHHHHHHHHHhhccC--CCChHHHHHHHHHcCCCc-hHHHHHHHHhcc---CCHHHHHHHHHHHhhcC
Q 008394 97 GVRKIYEMEALEYHHALELFSRHAFKQ--NHPDELSSKAVKYAQGVP-LALKVLGCFLYK---MEKEVWDSAINKLQRIH 170 (567)
Q Consensus 97 ~~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~c~glP-Lai~~~~~~l~~---~~~~~w~~~~~~l~~~~ 170 (567)
.....+++++++.++..+++...+... .-+++....|++.++|.+ -|+..+..+..+ .+.+....+........
T Consensus 199 ~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~ 278 (516)
T 1sxj_A 199 RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNI 278 (516)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTT
T ss_pred hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCC
Confidence 223478999999999999998876432 233446889999999954 445544333221 14444444444333333
Q ss_pred chhHHHHHHH
Q 008394 171 HPSILQILKI 180 (567)
Q Consensus 171 ~~~l~~~l~~ 180 (567)
....+.++..
T Consensus 279 ~~~~f~~~~~ 288 (516)
T 1sxj_A 279 ALKPFDIAHK 288 (516)
T ss_dssp TSHHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3344444433
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.38 E-value=5.3e-06 Score=79.23 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCCchHHHHHHHH-------Hhcc-cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC----------------------
Q 008394 1 MVGVESIVEEIES-------LLAV-ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF---------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~-------~L~~-~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f---------------------- 50 (567)
++|.+..++++.. .+.. .....+.+.|+|++|+|||++|+.+++.....|
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~ 114 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK 114 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHH
Confidence 4677777666665 2321 235567899999999999999999987532211
Q ss_pred ----------CceEEEEcCccc----------cHHHHHHHHhhcCC---CCCCceEEEEeCChhhhhcc---C-cccEEE
Q 008394 51 ----------EGSCFLENVREE----------SQDQEESLIESLDW---LTPVCRIIITTRNKQVLRNW---G-VRKIYE 103 (567)
Q Consensus 51 ----------~~~~~~~~~~~~----------~~~~~~~l~~~~~~---~~~~~~ilvTtR~~~~~~~~---~-~~~~~~ 103 (567)
..++++|++... .....+.+...+.. .+.+..||.||......... . -...+.
T Consensus 115 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~ 194 (272)
T 1d2n_A 115 KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194 (272)
T ss_dssp HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEE
T ss_pred HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEc
Confidence 234455554332 22233444443332 22334567777776443321 1 135688
Q ss_pred cCCCCH-HHHHHHHHHhhccCCCChHHHHHHHHHcCCC
Q 008394 104 MEALEY-HHALELFSRHAFKQNHPDELSSKAVKYAQGV 140 (567)
Q Consensus 104 l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~i~~~c~gl 140 (567)
+++++. ++..+++.+.. .-+.+....+++.+.|.
T Consensus 195 ~p~l~~r~~i~~i~~~~~---~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 195 VPNIATGEQLLEALELLG---NFKDKERTTIAQQVKGK 229 (272)
T ss_dssp CCCEEEHHHHHHHHHHHT---CSCHHHHHHHHHHHTTS
T ss_pred CCCccHHHHHHHHHHhcC---CCCHHHHHHHHHHhcCC
Confidence 999988 67777766532 22344678888888884
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.37 E-value=1.8e-06 Score=88.29 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=92.9
Q ss_pred CCCchHHH---HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc----------------------------
Q 008394 1 MVGVESIV---EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD---------------------------- 49 (567)
Q Consensus 1 ~vGr~~~~---~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~---------------------------- 49 (567)
++|.+..+ ..+...+..+ ....+.|+|++|+||||+|+.+.+.....
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~ 105 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAG 105 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcC
Confidence 57888888 6788888543 44689999999999999999998642211
Q ss_pred CCceEEEEcCccccHHHHHHHHhhcCCCCCCceEE-EEeCChhh--hhc-cCcccEEEcCCCCHHHHHHHHHHhhccC--
Q 008394 50 FEGSCFLENVREESQDQEESLIESLDWLTPVCRII-ITTRNKQV--LRN-WGVRKIYEMEALEYHHALELFSRHAFKQ-- 123 (567)
Q Consensus 50 f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~il-vTtR~~~~--~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~-- 123 (567)
-..++++|++......+.+.|...+.. ....+| .||.+... ... .....++.+++++.++..+++.+.+...
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~ 183 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTR 183 (447)
T ss_dssp CCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTT
T ss_pred CCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhh
Confidence 245778888877776666666555542 122333 34544421 111 1223478899999999999999887541
Q ss_pred -------CCChHHHHHHHHHcCCCchHHHHHHH
Q 008394 124 -------NHPDELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 124 -------~~~~~~~~~i~~~c~glPLai~~~~~ 149 (567)
.-+++..+.+++.++|.+-.+..+..
T Consensus 184 ~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 184 GYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp SSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 12344778889999998865554433
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=4.5e-06 Score=83.14 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=92.7
Q ss_pred CCCchHHHHHHHHHh-cccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC----------------------------
Q 008394 1 MVGVESIVEEIESLL-AVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE---------------------------- 51 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L-~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~---------------------------- 51 (567)
++|.+..++.+.+++ ..+. .+.+.|+|+.|+||||+|+.+...+...-.
T Consensus 16 ~vg~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 16 LSHNEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp CCSCHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred hcCCHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 589999999999988 4332 223999999999999999998875311100
Q ss_pred ------------------------------------------ceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCC
Q 008394 52 ------------------------------------------GSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRN 89 (567)
Q Consensus 52 ------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~ 89 (567)
.++++|+.........+.+...+.....+..+|++|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 02223332222222233333333323456677777765
Q ss_pred hh-hhhcc-CcccEEEcCCCCHHHHHHHHHHhhccCC--CC-hHHHHHHHHHcCCCchHHHHHHH
Q 008394 90 KQ-VLRNW-GVRKIYEMEALEYHHALELFSRHAFKQN--HP-DELSSKAVKYAQGVPLALKVLGC 149 (567)
Q Consensus 90 ~~-~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~-~~~~~~i~~~c~glPLai~~~~~ 149 (567)
.. +...+ .....+++++++.++..+.+...+...+ -+ ++..+.|++.++|.+..+..+..
T Consensus 174 ~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 174 MSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp SCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43 22221 1225799999999999999998764332 23 45688999999999876655443
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.32 E-value=8.3e-06 Score=77.34 Aligned_cols=147 Identities=14% Similarity=0.204 Sum_probs=88.5
Q ss_pred CCCchHHHHHHHHHhcc---c-------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------
Q 008394 1 MVGVESIVEEIESLLAV---E-------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~---~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------- 49 (567)
++|.++.+++|.+++.. . ....+.|.|+|++|+|||++|+.+++.....
T Consensus 8 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV 87 (262)
T ss_dssp SCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHH
Confidence 57899988888776532 1 1234568999999999999999998753221
Q ss_pred ----------CCceEEEEcCccccH---------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhh-cc----C
Q 008394 50 ----------FEGSCFLENVREESQ---------------DQEESLIESLDWL--TPVCRIIITTRNKQVLR-NW----G 97 (567)
Q Consensus 50 ----------f~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~-~~----~ 97 (567)
-+.++++|++..... ..+..+...+... ..+..||.||....... .. .
T Consensus 88 ~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R 167 (262)
T 2qz4_A 88 RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGR 167 (262)
T ss_dssp HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTS
T ss_pred HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCc
Confidence 146778887765421 2233333333221 23445666666543211 11 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCC--ChH-HHHHHHHHcCCCch-HHHHH
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNH--PDE-LSSKAVKYAQGVPL-ALKVL 147 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~--~~~-~~~~i~~~c~glPL-ai~~~ 147 (567)
....+.+++.+.++-.+++...+..... ..+ ....+++.+.|.+- .|..+
T Consensus 168 ~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 168 LDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 2357889999999999999887644322 222 34778888888754 44433
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2e-05 Score=77.87 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=94.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc--------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS-------------------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~-------------------------------- 48 (567)
++|.+..++.|...+..+ +.+.+.++|++|+||||+|+.+++.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~ 104 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBC
T ss_pred hcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhc
Confidence 478888999999888543 3334899999999999999999875321
Q ss_pred -cC---CceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEcCCCCHHHHHHHHHHhhc-
Q 008394 49 -DF---EGSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEMEALEYHHALELFSRHAF- 121 (567)
Q Consensus 49 -~f---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~- 121 (567)
.| ..+++++++........+.|...+........++++|.... +...+ .....+++.+++.++..+.+...+.
T Consensus 105 ~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 105 QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHH
Confidence 01 13344555554444555555555544445666777765432 11111 1123789999999999999887763
Q ss_pred -cCCCChHHHHHHHHHcCCCchHHHHH
Q 008394 122 -KQNHPDELSSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 122 -~~~~~~~~~~~i~~~c~glPLai~~~ 147 (567)
+..-+++..+.+++.++|.+--+..+
T Consensus 185 ~~~~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 185 EKLKLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22334557888999999988654433
No 179
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.27 E-value=2.6e-05 Score=77.39 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=91.9
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhc----------------------
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------- 48 (567)
++|.++.+++|.+.+.. .....+-|.|+|++|+|||++|+.+++....
T Consensus 53 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~ 132 (355)
T 2qp9_X 53 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLV 132 (355)
T ss_dssp SCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHH
Confidence 57899999999987731 1122346899999999999999999864321
Q ss_pred ---------cCCceEEEEcCccccH-----------HHHHHHHhhcCC---CCCCceEEEEeCChhhhh-cc--CcccEE
Q 008394 49 ---------DFEGSCFLENVREESQ-----------DQEESLIESLDW---LTPVCRIIITTRNKQVLR-NW--GVRKIY 102 (567)
Q Consensus 49 ---------~f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~---~~~~~~ilvTtR~~~~~~-~~--~~~~~~ 102 (567)
.-++++++|++..... .....+...+.. ...+..||.||..+.... .+ ..+..+
T Consensus 133 ~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 212 (355)
T 2qp9_X 133 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 212 (355)
T ss_dssp HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEE
Confidence 1246788887765431 123333333322 123455565666542211 11 223578
Q ss_pred EcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCC-chHHHHHH
Q 008394 103 EMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGV-PLALKVLG 148 (567)
Q Consensus 103 ~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~gl-PLai~~~~ 148 (567)
.++..+.++-.+++........ .++...+.|++.+.|. |-.|..+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999999988775443 2344677888888874 43344433
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.27 E-value=1.8e-05 Score=77.61 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred CCCchHHHHHHHHHhc----------ccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------
Q 008394 1 MVGVESIVEEIESLLA----------VESKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~----------~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------- 49 (567)
++|.++.+++|.+.+. ......+.|.|+|++|+|||++|+.+++.....
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~ 99 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLV 99 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHH
Confidence 5799999999998872 112234579999999999999999998643211
Q ss_pred ----------CCceEEEEcCccccH-----------HHHHHHHhhcCC---CCCCceEEEEeCChhhhhc-c--CcccEE
Q 008394 50 ----------FEGSCFLENVREESQ-----------DQEESLIESLDW---LTPVCRIIITTRNKQVLRN-W--GVRKIY 102 (567)
Q Consensus 50 ----------f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~---~~~~~~ilvTtR~~~~~~~-~--~~~~~~ 102 (567)
-++++++|++..... .....+...+.. ...+..||.||..+..... + .....+
T Consensus 100 ~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i 179 (322)
T 3eie_A 100 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 179 (322)
T ss_dssp HHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEE
T ss_pred HHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEE
Confidence 125788887764432 223344433332 2344556667765432211 1 123468
Q ss_pred EcCCCCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCC-chHHHH
Q 008394 103 EMEALEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGV-PLALKV 146 (567)
Q Consensus 103 ~l~~L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~gl-PLai~~ 146 (567)
.++..+.++-.+++...+..... ++.....+++.+.|. +-.|..
T Consensus 180 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 180 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp ECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 88999999999999988765432 344677888888774 433433
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.26 E-value=1.5e-05 Score=79.34 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------- 49 (567)
++|.++.+++|.+.+.. .....+.|.|+|++|+|||++|+.+++.....
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~ 165 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV 165 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHH
Confidence 57999999999988742 11335689999999999999999998753211
Q ss_pred ----------CCceEEEEcCccc-----------cHHHHHHHHhhcCC----CCCCceEEEEeCChhhhh-cc--CcccE
Q 008394 50 ----------FEGSCFLENVREE-----------SQDQEESLIESLDW----LTPVCRIIITTRNKQVLR-NW--GVRKI 101 (567)
Q Consensus 50 ----------f~~~~~~~~~~~~-----------~~~~~~~l~~~~~~----~~~~~~ilvTtR~~~~~~-~~--~~~~~ 101 (567)
-+.++++|++... .......+...+.. ...+..||.||....... .+ .....
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~ 245 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKR 245 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEE
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceE
Confidence 1356777766332 11223333333321 123345555665542211 11 12346
Q ss_pred EEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCC-CchHHHHHHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQG-VPLALKVLGC 149 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~g-lPLai~~~~~ 149 (567)
+.++..+.++..+++...+.... -.++..+.+++.+.| .|-.|..+..
T Consensus 246 i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 246 LYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 78999999999999987764332 334467889999988 4455555444
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=7.5e-06 Score=73.33 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||+++++++.+.+.. +..+.+.|+|++|+|||++|+.+++.+
T Consensus 24 ~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999954 334578999999999999999998875
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.25 E-value=1.2e-05 Score=78.35 Aligned_cols=122 Identities=15% Similarity=0.204 Sum_probs=82.4
Q ss_pred CCCchHHHHHHHHHhccc-------------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc------------------
Q 008394 1 MVGVESIVEEIESLLAVE-------------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD------------------ 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-------------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------------------ 49 (567)
++|.++.+++|.+.+... ......+.|+|++|+|||++|+.+++.+...
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence 589999999988776421 2344579999999999999999887754220
Q ss_pred -----------------CCceEEEEcCccc---------cHHHHHHHHhhcCCCCCCceEEEEeCChhhhh------cc-
Q 008394 50 -----------------FEGSCFLENVREE---------SQDQEESLIESLDWLTPVCRIIITTRNKQVLR------NW- 96 (567)
Q Consensus 50 -----------------f~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~------~~- 96 (567)
-..++++|++... .....+.|...+.....+..+|.||....... .+
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 192 (309)
T 3syl_A 113 QYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFR 192 (309)
T ss_dssp SSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred hcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHH
Confidence 1246677776633 44555666665554455677888876542211 10
Q ss_pred -CcccEEEcCCCCHHHHHHHHHHhhcc
Q 008394 97 -GVRKIYEMEALEYHHALELFSRHAFK 122 (567)
Q Consensus 97 -~~~~~~~l~~L~~~~~~~l~~~~~~~ 122 (567)
.....+.+++++.++..+++...+..
T Consensus 193 ~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 193 SRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 11257899999999999999887653
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.21 E-value=3e-06 Score=72.44 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh---cc---------------------CCceEEE
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS---SD---------------------FEGSCFL 56 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---~~---------------------f~~~~~~ 56 (567)
++|++..+.++.+.+.........|.|+|++|+|||++|+.+++... .. -.+.+++
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g~l~l 82 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLVL 82 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTSCEEE
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCcEEEE
Confidence 58999999999988865333445689999999999999999987521 11 1246677
Q ss_pred EcCccccHHHHHHHHhhcCCCCCCceEEEEeCCh
Q 008394 57 ENVREESQDQEESLIESLDWLTPVCRIIITTRNK 90 (567)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~ 90 (567)
+++.....+....+...+.......++|.||...
T Consensus 83 dei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 83 SHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 7777777666666766664445566788777653
No 185
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.2e-05 Score=79.74 Aligned_cols=141 Identities=18% Similarity=0.258 Sum_probs=90.6
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-----------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI----------------------- 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~----------------------- 46 (567)
+.|.++.+++|.+.+.- +-...+-|.+||++|.|||.||++++...
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~ 229 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRM 229 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHH
Confidence 35788899988877642 12335679999999999999999997642
Q ss_pred --------hccCCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----C
Q 008394 47 --------SSDFEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 47 --------~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
+..=++++|+|.+..... .....+...+... ..+-.||.||..++..+. + .
T Consensus 230 vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGR 309 (405)
T 4b4t_J 230 VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGR 309 (405)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTS
T ss_pred HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCc
Confidence 223368889886654322 2334444444322 234456667766544322 1 2
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
-+..+.++.-+.++-.++|+.+..+.....+ -.+.+++.+.|.-
T Consensus 310 fD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 310 IDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred CceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence 3468899988999989999877644322211 2577888888754
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=9.8e-06 Score=82.86 Aligned_cols=125 Identities=13% Similarity=0.125 Sum_probs=80.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccC------------------------------------CceEEEEcCccccH-
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDF------------------------------------EGSCFLENVREESQ- 64 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f------------------------------------~~~~~~~~~~~~~~- 64 (567)
...+.|+|++|+||||||+.+++.+...+ ..++++|+++....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 56899999999999999999987542221 23556666654442
Q ss_pred -HHHHHHHhhcCC-CCCCceEEEEeCChhh---------hhccCcccEEEcCCCCHHHHHHHHHHhhcc--CCCChHHHH
Q 008394 65 -DQEESLIESLDW-LTPVCRIIITTRNKQV---------LRNWGVRKIYEMEALEYHHALELFSRHAFK--QNHPDELSS 131 (567)
Q Consensus 65 -~~~~~l~~~~~~-~~~~~~ilvTtR~~~~---------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~ 131 (567)
...+.+...+.. ...|..||+||..... ...+.....+.+++++.++..+++.+.+.. ..-+++...
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~ 289 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLN 289 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 223333333221 2456788888876321 111222246889999999999999988742 223445678
Q ss_pred HHHHHcCCCchHHHH
Q 008394 132 KAVKYAQGVPLALKV 146 (567)
Q Consensus 132 ~i~~~c~glPLai~~ 146 (567)
.|++.++|.+-.+..
T Consensus 290 ~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 290 FVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHCCSCHHHHHH
T ss_pred HHHHhcCCCHHHHHH
Confidence 889999998865443
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.18 E-value=4.7e-05 Score=74.42 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=91.3
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-hcc--------------------
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI-SSD-------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~-~~~-------------------- 49 (567)
++|.++.+++|.+.+.. .....+.|.|+|++|+|||++|+.+++.. ...
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~ 93 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKL 93 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHH
Confidence 47889999988877631 11234689999999999999999998764 211
Q ss_pred -----------CCceEEEEcCcccc-----------HHHHHHHHhhcCC---CCCCceEEEEeCChhhhhc-c--CcccE
Q 008394 50 -----------FEGSCFLENVREES-----------QDQEESLIESLDW---LTPVCRIIITTRNKQVLRN-W--GVRKI 101 (567)
Q Consensus 50 -----------f~~~~~~~~~~~~~-----------~~~~~~l~~~~~~---~~~~~~ilvTtR~~~~~~~-~--~~~~~ 101 (567)
-++++++|++.... ......+...+.. ...+..||.||..+..... + ..+..
T Consensus 94 ~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~ 173 (322)
T 1xwi_A 94 VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKR 173 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEE
T ss_pred HHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeE
Confidence 13577787665441 1223333333322 1234455556654422111 1 22357
Q ss_pred EEcCCCCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCCc-hHHHHHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGVP-LALKVLG 148 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~glP-Lai~~~~ 148 (567)
+.++..+.++-.+++......... .+...+.+++.+.|.. -.|..+.
T Consensus 174 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 174 IYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888999999999999887754332 3446788888888864 3344443
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.13 E-value=5.4e-05 Score=77.51 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=92.1
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-hcc--------------------
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI-SSD-------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~-~~~-------------------- 49 (567)
++|.++.++.|.+.+.. .....+.|.|+|++|+|||++|+.+++.. ...
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~ 215 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKL 215 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCT
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHH
Confidence 57899999999887731 11234689999999999999999998754 111
Q ss_pred -----------CCceEEEEcCcccc-----------HHHHHHHHhhcCCC---CCCceEEEEeCChhhhhc-c--CcccE
Q 008394 50 -----------FEGSCFLENVREES-----------QDQEESLIESLDWL---TPVCRIIITTRNKQVLRN-W--GVRKI 101 (567)
Q Consensus 50 -----------f~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~---~~~~~ilvTtR~~~~~~~-~--~~~~~ 101 (567)
-++++|+|++.... ......+...+... ..+..||.||..+..... + ..+..
T Consensus 216 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~ 295 (444)
T 2zan_A 216 VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKR 295 (444)
T ss_dssp HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceE
Confidence 13567777665431 23344454444332 344556667765432111 1 22346
Q ss_pred EEcCCCCHHHHHHHHHHhhccCCC--ChHHHHHHHHHcCCCc-hHHHHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQNH--PDELSSKAVKYAQGVP-LALKVL 147 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~~--~~~~~~~i~~~c~glP-Lai~~~ 147 (567)
+.++..+.++-.+++......... ++.....|++.+.|.. -.|..+
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 888888999999999887754332 3346778888888843 334333
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.12 E-value=2.9e-05 Score=76.14 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=83.0
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-C--------------------------------Cce
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD-F--------------------------------EGS 53 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f--------------------------------~~~ 53 (567)
..+.+..+..........+.|+|++|+||||||+.+++..... + ..+
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 101 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDL 101 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSE
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCE
Confidence 3445555554332245679999999999999999998754211 1 346
Q ss_pred EEEEcCccccH--HHHHHHHhhcCC-CCCCceEEEEeCChhh---------hhccCcccEEEcCCCCHHHHHHHHHHhhc
Q 008394 54 CFLENVREESQ--DQEESLIESLDW-LTPVCRIIITTRNKQV---------LRNWGVRKIYEMEALEYHHALELFSRHAF 121 (567)
Q Consensus 54 ~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~ilvTtR~~~~---------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 121 (567)
+++|+++.... ...+.+...+.. ...+..+|+||..... ...+.....+++++ +.++..+++...+.
T Consensus 102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 66777665442 222333333221 2345678888764321 11112224689999 99999999998875
Q ss_pred c--CCCChHHHHHHHHHcCCCchH
Q 008394 122 K--QNHPDELSSKAVKYAQGVPLA 143 (567)
Q Consensus 122 ~--~~~~~~~~~~i~~~c~glPLa 143 (567)
. ..-+++..+.+++.+ |.+-.
T Consensus 181 ~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 181 EFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred hcCCCCCHHHHHHHHHhC-CCHHH
Confidence 3 234455778888888 76643
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.12 E-value=4.7e-05 Score=73.63 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=89.9
Q ss_pred CCCchHHHHHHHHHhccc----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------
Q 008394 1 MVGVESIVEEIESLLAVE----------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~----------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------- 49 (567)
++|.++.++++.+.+... ....+.+.|+|++|+||||+|+.+++.....
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~ 102 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 102 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHH
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHH
Confidence 579999999999887321 1234689999999999999999998753211
Q ss_pred ----------CCceEEEEcCcccc-----------HHHHHHHHhhc---CCC--CCCceEEEEeCChhhhhc-c--Cccc
Q 008394 50 ----------FEGSCFLENVREES-----------QDQEESLIESL---DWL--TPVCRIIITTRNKQVLRN-W--GVRK 100 (567)
Q Consensus 50 ----------f~~~~~~~~~~~~~-----------~~~~~~l~~~~---~~~--~~~~~ilvTtR~~~~~~~-~--~~~~ 100 (567)
-+.++++|++.... ......+...+ ... +.+..||.||..+..... . ....
T Consensus 103 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~ 182 (297)
T 3b9p_A 103 RALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK 182 (297)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCE
T ss_pred HHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCe
Confidence 13567777664331 12222222222 111 133456667765432111 1 1224
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCch-HHHHHH
Q 008394 101 IYEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPL-ALKVLG 148 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPL-ai~~~~ 148 (567)
.+.++..+.++..+++...+.... -..+..+.+++.+.|.+- ++..+.
T Consensus 183 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 183 RVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 678888888888888887764432 234467889999998875 444443
No 191
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.4e-05 Score=80.43 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=87.8
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHh----------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKIS---------------------- 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---------------------- 47 (567)
+.|.++.+++|.+.+.. +-...+-|.+||++|.|||.+|++++....
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ 262 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKL 262 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHH
Confidence 46888999988876532 123456899999999999999999986422
Q ss_pred ---------ccCCceEEEEcCccccH--------------HHHHHHHhhcCCCC--CCceEEEEeCChhhhhc-c----C
Q 008394 48 ---------SDFEGSCFLENVREESQ--------------DQEESLIESLDWLT--PVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 48 ---------~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~--~~~~ilvTtR~~~~~~~-~----~ 97 (567)
..-++++|++.+..... .....+...+.... .+-.||.||..++..+. + .
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGR 342 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGR 342 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTS
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCc
Confidence 23367888886543211 22334444444332 33355557776644332 1 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
-+..+.++.-+.++-.++|+.+..+.....+ -.+.+++.+.|.-
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 343 LDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFN 387 (434)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCC
T ss_pred eeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCC
Confidence 2357888888888888888766543221111 2567788887753
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.10 E-value=2.3e-05 Score=76.83 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=95.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------------------------c-----CC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------------------------D-----FE 51 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------------------------~-----f~ 51 (567)
++|.++.++.+.+++..+. ...++.++|++|+|||++|+.+++.+.. . -.
T Consensus 28 ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 106 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQ 106 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCE
T ss_pred HhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCCC
Confidence 5899999999999996432 3357888899999999999999864210 1 12
Q ss_pred ceEEEEcCcccc-HHHHHHHHhhcCCCCCCceEEEEeCChhhhh-cc-CcccEEEcCCCCHHHHHHHH-------HHhhc
Q 008394 52 GSCFLENVREES-QDQEESLIESLDWLTPVCRIIITTRNKQVLR-NW-GVRKIYEMEALEYHHALELF-------SRHAF 121 (567)
Q Consensus 52 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~-~~-~~~~~~~l~~L~~~~~~~l~-------~~~~~ 121 (567)
.++++|++.... .+..+.+...+.....+..+|+||....... .+ ..-..+++++.+.++-.+++ ...+.
T Consensus 107 ~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~ 186 (324)
T 3u61_B 107 KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICK 186 (324)
T ss_dssp EEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467788888777 6666666665544445678888877654211 11 11147999999988843332 22222
Q ss_pred --cCCCCh-HHHHHHHHHcCCCchHHHH
Q 008394 122 --KQNHPD-ELSSKAVKYAQGVPLALKV 146 (567)
Q Consensus 122 --~~~~~~-~~~~~i~~~c~glPLai~~ 146 (567)
+...++ +..+.+++.++|.+..+..
T Consensus 187 ~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 187 HEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred HcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 122334 6788899999988765443
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.07 E-value=6.9e-05 Score=75.47 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=91.4
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------- 49 (567)
++|.+..++.|.+++.. .....+.|.|+|++|+|||++|+.+++.....
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~ 196 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 196 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHH
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHH
Confidence 58999999999988832 11224689999999999999999998652211
Q ss_pred ----------CCceEEEEcCcccc-----------HHHHHHHHhhcCC----CCCCceEEEEeCChhhhhc-c--CcccE
Q 008394 50 ----------FEGSCFLENVREES-----------QDQEESLIESLDW----LTPVCRIIITTRNKQVLRN-W--GVRKI 101 (567)
Q Consensus 50 ----------f~~~~~~~~~~~~~-----------~~~~~~l~~~~~~----~~~~~~ilvTtR~~~~~~~-~--~~~~~ 101 (567)
-++++|+|++.... ......+...+.. ...+..||.||........ + .....
T Consensus 197 ~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~ 276 (389)
T 3vfd_A 197 RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276 (389)
T ss_dssp HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEE
T ss_pred HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceE
Confidence 12577888775442 1222233222211 1223445556654322111 1 12246
Q ss_pred EEcCCCCHHHHHHHHHHhhccCC--CChHHHHHHHHHcCCCch-HHHHHH
Q 008394 102 YEMEALEYHHALELFSRHAFKQN--HPDELSSKAVKYAQGVPL-ALKVLG 148 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~i~~~c~glPL-ai~~~~ 148 (567)
+.++..+.++..+++...+.... ..++....+++.+.|..- +|..+.
T Consensus 277 i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 277 VYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88999999999999988775432 334467888999888654 444443
No 194
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.7e-05 Score=78.44 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=88.7
Q ss_pred CCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 2 VGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
.|.++.+++|.+.+.- +-...+-|.+||++|.|||++|+++++..
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~i 263 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII 263 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHH
Confidence 5788888888877642 12345789999999999999999998642
Q ss_pred -------hccCCceEEEEcCccccH--------------HHHHHHHhhcCC--CCCCceEEEEeCChhhhhcc--C---c
Q 008394 47 -------SSDFEGSCFLENVREESQ--------------DQEESLIESLDW--LTPVCRIIITTRNKQVLRNW--G---V 98 (567)
Q Consensus 47 -------~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~--~~~~~~ilvTtR~~~~~~~~--~---~ 98 (567)
+..-++++|++.+..... ..+..+...+.. ...+..||.||..++..+.. . -
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRf 343 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRL 343 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSE
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCcc
Confidence 223468889886653321 233344444432 23345677777766543321 1 2
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+..+.++.-+.++-.++|+.+..+.....+ ....+++.+.|.-
T Consensus 344 D~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 344 DRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCC
T ss_pred ceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCC
Confidence 356888888888888888877644322111 2567778887754
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.04 E-value=5.7e-05 Score=73.11 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCCchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHh----------------------
Q 008394 1 MVGVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDKIS---------------------- 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---------------------- 47 (567)
++|.++.+++|.+.+... -...+.|.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~ 96 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 96 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTH
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHH
Confidence 578899999888877421 13345799999999999999999976321
Q ss_pred ---------ccCCceEEEEcCccccHH--------------HHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----C
Q 008394 48 ---------SDFEGSCFLENVREESQD--------------QEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 48 ---------~~f~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
...++++++|++...... ....+...+... ..+..||.||........ + .
T Consensus 97 ~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gR 176 (301)
T 3cf0_A 97 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 176 (301)
T ss_dssp HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCc
Confidence 123467888877643321 233344333221 234566777765532221 1 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCchH
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVPLA 143 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glPLa 143 (567)
....+.++..+.++-.+++...........+ ....+++.+.|.|-+
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 177 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHH
T ss_pred cceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHH
Confidence 2357889999999999998877643321111 234566667776643
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=1.5e-06 Score=77.82 Aligned_cols=70 Identities=16% Similarity=0.030 Sum_probs=41.2
Q ss_pred cChhhhccCCCcEEecCCCccCcc----CcccccCCCCCcEEec--cCCCCCcc----cCcccCCCCCcceecccccccc
Q 008394 487 LPSSIELLLRLEYLDLSDCKRLKS----LPSSLCKLKSLEILDL--SGCSNLQR----LPECLGQLSSLGTLLLEKPILR 556 (567)
Q Consensus 487 lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~ 556 (567)
+...+...++|++|++++|.+... +...+...++|++|++ ++|.+... +...+...++|+.|++++|.+.
T Consensus 85 l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 85 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 334455556677777776664432 3344556667777777 55555432 2334455677777777777664
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=0.00014 Score=71.53 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC---------------------CceEEEEcC---c
Q 008394 5 ESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF---------------------EGSCFLENV---R 60 (567)
Q Consensus 5 ~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~---~ 60 (567)
++..+.+.+.+..+ .-.+.+.++|+.|+|||++|+.+.+.+.... +...++... .
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 45667777777433 2345799999999999999999998753221 223344321 1
Q ss_pred cccH--------------------------------HHHHHHHhhcCCCCCCceEEEEeCChh-hhhcc-CcccEEEcCC
Q 008394 61 EESQ--------------------------------DQEESLIESLDWLTPVCRIIITTRNKQ-VLRNW-GVRKIYEMEA 106 (567)
Q Consensus 61 ~~~~--------------------------------~~~~~l~~~~~~~~~~~~ilvTtR~~~-~~~~~-~~~~~~~l~~ 106 (567)
+... ...+.|...+.....++.+|++|...+ +...+ .....+++++
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~ 166 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP 166 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCC
Confidence 1111 333444444443345567777766653 22222 2234799999
Q ss_pred CCHHHHHHHHHHhhccCCCChHHHHHHHHHcCCCchHHHHHH
Q 008394 107 LEYHHALELFSRHAFKQNHPDELSSKAVKYAQGVPLALKVLG 148 (567)
Q Consensus 107 L~~~~~~~l~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 148 (567)
+++++..+.+.... ...++.++.+++.++|.|..+..+.
T Consensus 167 ~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 167 PPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999998875 2334456889999999997665544
No 198
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.4e-05 Score=77.60 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=82.8
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-----------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI----------------------- 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~----------------------- 46 (567)
+.|.++.+++|.+.+.. +-...+-|.+||++|.|||++|+++++..
T Consensus 174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ 253 (428)
T 4b4t_K 174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRM 253 (428)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHH
Confidence 35788889888876642 12345679999999999999999998642
Q ss_pred --------hccCCceEEEEcCccccH--------------HHHHHHHhhcCC--CCCCceEEEEeCChhhhhc-c----C
Q 008394 47 --------SSDFEGSCFLENVREESQ--------------DQEESLIESLDW--LTPVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 47 --------~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~--~~~~~~ilvTtR~~~~~~~-~----~ 97 (567)
+..-++++|++.+..... ..+..+...+.. ...+-.||.||..++..+. + .
T Consensus 254 ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGR 333 (428)
T 4b4t_K 254 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGR 333 (428)
T ss_dssp HHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSS
T ss_pred HHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCc
Confidence 223367888875542211 223334433322 2344566777776543222 1 1
Q ss_pred cccEEEcCCCC-HHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALE-YHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~-~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.+..+.++.+. .++-.++|+.+..+.....+ ....+++.+.|.-
T Consensus 334 fd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 334 LDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLS 379 (428)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCC
Confidence 23467786664 45555666655533221111 2567778887753
No 199
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=3.6e-05 Score=76.56 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=87.7
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-----------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI----------------------- 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~----------------------- 46 (567)
+.|.++.+++|.+.+.- +-...+-|.+||++|.|||.+|++++...
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ 263 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRL 263 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHH
Confidence 35788889888876632 11335679999999999999999998642
Q ss_pred --------hccCCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhcc-----C
Q 008394 47 --------SSDFEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRNW-----G 97 (567)
Q Consensus 47 --------~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~~-----~ 97 (567)
+..-++++|+|++..... ..+..+...+... ..+..||.||..++..+.. .
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 343 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGR 343 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTT
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCc
Confidence 223468889885543321 2333444433322 2344566677666543321 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.+..+.++.-+.++-.++|+.+..+.....+ ..+.+++.+.|.-
T Consensus 344 fD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 344 IDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLS 388 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCC
T ss_pred eeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCC
Confidence 2346778877888888888877644322111 2567788887753
No 200
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=6.8e-05 Score=75.71 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=13.4
Q ss_pred ccccChhhhhcccccccCCCeeEEEEe
Q 008394 296 IYKLDMDIFINSRIDESRINSRVTMIR 322 (567)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~L~l~ 322 (567)
+.++...+|.+ . .+|+.+.+.
T Consensus 59 VtsIg~~AF~~--c----~~L~~i~lp 79 (394)
T 4fs7_A 59 VVSIGYAAFQG--C----RKVTEIKIP 79 (394)
T ss_dssp EEEECTTTTTT--C----TTEEEEECC
T ss_pred EeEhHHHHhhC--C----CCceEEEeC
Confidence 34455667777 5 777777664
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.8e-05 Score=77.21 Aligned_cols=141 Identities=14% Similarity=0.198 Sum_probs=88.1
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHHh----------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKIS---------------------- 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---------------------- 47 (567)
+.|.++.+++|.+.+.- +-...+-|.+||++|.|||.+|++++....
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ 290 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 290 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHH
Confidence 35788899998876532 223467899999999999999999986422
Q ss_pred ---------ccCCceEEEEcCccccH--------------HHHHHHHhhcCCCC--CCceEEEEeCChhhhhc-c----C
Q 008394 48 ---------SDFEGSCFLENVREESQ--------------DQEESLIESLDWLT--PVCRIIITTRNKQVLRN-W----G 97 (567)
Q Consensus 48 ---------~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~--~~~~ilvTtR~~~~~~~-~----~ 97 (567)
..-++++|++.+..... .....+...+.... .+..||.||..+...+. + .
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 370 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR 370 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTT
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccc
Confidence 23367888886553321 22333334333222 33345666765543322 1 2
Q ss_pred cccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 98 VRKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
-+..+.++.-+.++-.++|+.+..+.....+ ..+.+++.|.|.-
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNST 415 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCC
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCC
Confidence 3467888888888888999877644322111 2567888888753
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.98 E-value=6.6e-05 Score=77.47 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------
Q 008394 1 MVGVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDKISS--------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~--------------------- 48 (567)
++|.+..+++|.+++... ....+-|.|+|++|+|||++|+.+++....
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~ 285 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHH
Confidence 578999999998887532 234457999999999999999999764211
Q ss_pred ----------cCCceEEEEcCccc-----------cHHHHHHHHhhcCCC--CCCceEEEEeCChhh-hhcc----Cccc
Q 008394 49 ----------DFEGSCFLENVREE-----------SQDQEESLIESLDWL--TPVCRIIITTRNKQV-LRNW----GVRK 100 (567)
Q Consensus 49 ----------~f~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~--~~~~~ilvTtR~~~~-~~~~----~~~~ 100 (567)
.-++++++|++... .......|...+... ..+..||.||..... ...+ ....
T Consensus 286 ~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~ 365 (489)
T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (489)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCE
T ss_pred HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCce
Confidence 12357888876321 112333344333322 233455556665532 1111 2234
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCC
Q 008394 101 IYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGV 140 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~gl 140 (567)
.+.++..+.++-.+++..++.......+ ....+++.+.|.
T Consensus 366 ~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (489)
T ss_dssp EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTC
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCC
Confidence 7899999999999999988754332221 246677777664
No 203
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=3e-06 Score=74.04 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=46.9
Q ss_pred CCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhcc----CCCcEEec
Q 008394 427 KLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELL----LRLEYLDL 502 (567)
Q Consensus 427 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l----~~L~~L~l 502 (567)
+|+.||+++|.+...--..+..+++|++|+|++|..+++ .++ ..+..+ ++|++|++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD----------------~gL----~~L~~~~~~~~~L~~L~L 121 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED----------------GCL----ERLSQLENLQKSMLEMEI 121 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH----------------HHH----HHHHTCHHHHHHCCEEEE
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH----------------HHH----HHHHhcccccCCCCEEEc
Confidence 566777777664333334456677777777777643221 111 112222 35677777
Q ss_pred CCCccCcc-CcccccCCCCCcEEeccCCCCCc
Q 008394 503 SDCKRLKS-LPSSLCKLKSLEILDLSGCSNLQ 533 (567)
Q Consensus 503 ~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~ 533 (567)
++|...++ --..+.++++|+.|++++|+.++
T Consensus 122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp ESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 76653322 12235566777777777766544
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.91 E-value=4.8e-05 Score=73.92 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=36.7
Q ss_pred CCCchHHHHHHHHHhcc------------cCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAV------------ESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~------------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.++.++.+...+.. .......+.|+|++|+|||++|+.+.+..
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999887754 01234578999999999999999998764
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=2e-06 Score=81.08 Aligned_cols=81 Identities=26% Similarity=0.257 Sum_probs=46.5
Q ss_pred CCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcEEecCCCccCccCcccccCCC--CCcEEe
Q 008394 448 NLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEYLDLSDCKRLKSLPSSLCKLK--SLEILD 525 (567)
Q Consensus 448 ~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~--~L~~L~ 525 (567)
.+++|+.|+|++|... ++..+|..+..+++|++|+|++|.+.+. ..+..+. +|++|+
T Consensus 168 ~l~~L~~L~Ls~N~l~-------------------~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLY-------------------RLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 226 (267)
T ss_dssp HCTTCCEEECTTSCCC-------------------CCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEE
T ss_pred hCCCCCEEECCCCCCC-------------------CCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEE
Confidence 4677777777774321 1223445556677777777777665432 1233333 677777
Q ss_pred ccCCCCCcccCc-------ccCCCCCcceec
Q 008394 526 LSGCSNLQRLPE-------CLGQLSSLGTLL 549 (567)
Q Consensus 526 l~~~~~~~~~p~-------~l~~l~~L~~L~ 549 (567)
+++|++.+.+|. .+..+|+|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 777776655442 245667777666
No 206
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=2.9e-06 Score=74.16 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=55.3
Q ss_pred CceEEEccCCcccccchhhhhhccCCcEEecccCccccccCCCCCCCCC----CcCCcEEecCCCccCCcc-CCcccCCC
Q 008394 376 QLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKMLIAKTPNPTLIPH----LNKLVILNLRGSKSLKSL-PAGIFNLE 450 (567)
Q Consensus 376 ~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~-p~~l~~l~ 450 (567)
+|+.||+++|.|.+..-....++++|++|+|++|..++ +. ....+.. .++|++|+|++|..++.- -..+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 56677777766655322222378888888888887544 11 1112233 247899999988744432 24466789
Q ss_pred CCcEEEcCCCCCCC
Q 008394 451 FLTTLDLSGCPKLK 464 (567)
Q Consensus 451 ~L~~L~Ls~~~~~~ 464 (567)
+|++|+|++|+.++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999999986544
No 207
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00023 Score=71.73 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred CCCCcCCcEEecCCCccCCccCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccCh-hhhccCCCcEE
Q 008394 422 IPHLNKLVILNLRGSKSLKSLPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPS-SIELLLRLEYL 500 (567)
Q Consensus 422 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L 500 (567)
+..+..|+.+.+..+. .......+..+..++.+...... ..........+|+.+.+.. .++.++. .|.++++|+.+
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI-VPEKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE-ECTTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCcee-ecccccccccccccccccc-ccceechhhhcCCCCCCEE
Confidence 4445555555554332 22222334445555555443321 1111111122666666654 3566654 47778888888
Q ss_pred ecCCCccCccC-cccccCCCCCcEEeccCCCCCccc-CcccCCCCCcceeccccc
Q 008394 501 DLSDCKRLKSL-PSSLCKLKSLEILDLSGCSNLQRL-PECLGQLSSLGTLLLEKP 553 (567)
Q Consensus 501 ~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~ 553 (567)
++.++ ...+ ...|.++.+|+.+.+..+ +..+ ...|.+|++|+.+.+..+
T Consensus 326 ~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 88643 3333 345778888888888664 3333 345778888888887654
No 208
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.82 E-value=6.8e-05 Score=72.38 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHhcc--cCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 2 VGVESIVEEIESLLAV--ESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.||++++++|...|.. ..+..+.+.|+|++|+|||++|+.+++.+.
T Consensus 23 ~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999988865 345667899999999999999999998874
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.82 E-value=0.00012 Score=75.36 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++||+++++.+.+.+.... ..-+.|+|++|+|||++|+.+++.+.
T Consensus 182 iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999996532 23678999999999999999998863
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=1.9e-05 Score=74.36 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=17.9
Q ss_pred CcCCcEEecCCCccCC--ccCCcccCCCCCcEEEcCC
Q 008394 425 LNKLVILNLRGSKSLK--SLPAGIFNLEFLTTLDLSG 459 (567)
Q Consensus 425 l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~Ls~ 459 (567)
+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence 4445555555554332 3334444566666666666
No 211
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.79 E-value=3e-05 Score=69.01 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=39.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++||+++++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 24 ~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999954 33457899999999999999999988644
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.78 E-value=7.5e-06 Score=69.74 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=59.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh--------------------ccCCceEEEEcCc
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS--------------------SDFEGSCFLENVR 60 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~--------------------~~f~~~~~~~~~~ 60 (567)
++|++..++++.+.+.........|.|+|.+|+|||++|+.+++... ..-.+.+++|++.
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~ 85 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIA 85 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEECT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeChH
Confidence 58999999999988865222334688999999999999998864211 1124678888888
Q ss_pred cccHHHHHHHHhhcCCC-CCCceEEEEeCC
Q 008394 61 EESQDQEESLIESLDWL-TPVCRIIITTRN 89 (567)
Q Consensus 61 ~~~~~~~~~l~~~~~~~-~~~~~ilvTtR~ 89 (567)
....+....+...+... ..+.++|.||..
T Consensus 86 ~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 86 QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 77776666665544322 345667777654
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.72 E-value=9.3e-05 Score=70.17 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
++|.+..+.++.+.+.........|.|+|.+|+|||++|+.+++.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 579999999888777543333357889999999999999999763
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=0.00017 Score=79.27 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=80.7
Q ss_pred CCCchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHHhc-------------------------
Q 008394 1 MVGVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKISS------------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------------------------- 48 (567)
++|.+..++.+.+.+.... .....+.++|++|+|||++|+.+++....
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~ 572 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CH
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhh
Confidence 5799999988888876422 12237999999999999999999876411
Q ss_pred -----cCCceEEEEcCccccHHHHHHHHhhcCCC-----------CCCceEEEEeCChhh---------hhcc------C
Q 008394 49 -----DFEGSCFLENVREESQDQEESLIESLDWL-----------TPVCRIIITTRNKQV---------LRNW------G 97 (567)
Q Consensus 49 -----~f~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~ilvTtR~~~~---------~~~~------~ 97 (567)
.-..++++|++.....+..+.|...+..+ .....||.||....- ...+ .
T Consensus 573 ~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R 652 (758)
T 3pxi_A 573 EKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINR 652 (758)
T ss_dssp HHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT
T ss_pred HHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh
Confidence 01246788888888777777776655331 134578888873210 0111 1
Q ss_pred cccEEEcCCCCHHHHHHHHHHhh
Q 008394 98 VRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 98 ~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
.+.++.+.+++.++..+++....
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHH
T ss_pred CCeEEecCCCCHHHHHHHHHHHH
Confidence 12489999999999999887754
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=0.00051 Score=64.69 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHHHhcc---c-------CCCeEEEEEEcCCCChHHHHHHHHHHHHhc----------------------
Q 008394 1 MVGVESIVEEIESLLAV---E-------SKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~---~-------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------- 48 (567)
++|.++.++++.+.+.. . ....+-+.|+|++|+||||+|+.+++....
T Consensus 14 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~ 93 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 93 (257)
T ss_dssp SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHH
Confidence 57888888887765432 1 012345899999999999999999875421
Q ss_pred ---------cCCceEEEEcCcccc--------------HHHHHHHHhhcCC--CCCCceEEEEeCChhhh-hcc----Cc
Q 008394 49 ---------DFEGSCFLENVREES--------------QDQEESLIESLDW--LTPVCRIIITTRNKQVL-RNW----GV 98 (567)
Q Consensus 49 ---------~f~~~~~~~~~~~~~--------------~~~~~~l~~~~~~--~~~~~~ilvTtR~~~~~-~~~----~~ 98 (567)
..+++++++++.... ......+...+.. ...+..||.||...+.. ... ..
T Consensus 94 ~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf 173 (257)
T 1lv7_A 94 RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRF 173 (257)
T ss_dssp HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSS
T ss_pred HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcC
Confidence 122345555431110 0122223222221 12334566666655322 111 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCC-Cch
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQG-VPL 142 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~g-lPL 142 (567)
+..+.++..+.++-.+++...........+ ....+++.+.| .+-
T Consensus 174 ~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 174 DRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHH
Confidence 346788888888888888776543221111 23456666666 443
No 216
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0011 Score=66.77 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=41.9
Q ss_pred CCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCCcEEeccCCCCCcccC-cccCCCCCcceecc
Q 008394 473 NTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSLEILDLSGCSNLQRLP-ECLGQLSSLGTLLL 550 (567)
Q Consensus 473 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l 550 (567)
+|+.+.+. +.++.++. .|.++.+|+.+.+..+ ....-...|.++.+|+.+.+..+ +..+. ..|.+|++|+.+.+
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence 44555543 33445543 3556666666666542 12222234666777777777542 22332 34677777777777
Q ss_pred ccc
Q 008394 551 EKP 553 (567)
Q Consensus 551 ~~~ 553 (567)
.++
T Consensus 365 ~~~ 367 (394)
T 4gt6_A 365 SGS 367 (394)
T ss_dssp SSC
T ss_pred CCc
Confidence 665
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.62 E-value=0.00036 Score=67.75 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++..
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 5799999999888886531 123589999999999999999998754
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.61 E-value=0.00049 Score=75.71 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||+++++++.+.|... ...-+.|+|++|+|||++|+.+.+.+
T Consensus 188 ~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 188 LIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999653 33467899999999999999998865
No 219
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.56 E-value=0.00041 Score=68.05 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=77.2
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc-------------------------------
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD------------------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~------------------------------- 49 (567)
++|+++.++.+...+..+ ..+.|+|++|+|||++|+.+.+.+...
T Consensus 29 i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~ 104 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVK 104 (331)
T ss_dssp CCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEE
T ss_pred eeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEec
Confidence 579999999988887553 268999999999999999998743211
Q ss_pred ----CCceEEEEcCccccHHHHHHHHhhcCC-----------CCCCceEEEEeCChhh------hhcc--CcccEEEcCC
Q 008394 50 ----FEGSCFLENVREESQDQEESLIESLDW-----------LTPVCRIIITTRNKQV------LRNW--GVRKIYEMEA 106 (567)
Q Consensus 50 ----f~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~ilvTtR~~~~------~~~~--~~~~~~~l~~ 106 (567)
+..++++|++..........+...+.. ......|+.|+..... ...+ .....+.+++
T Consensus 105 ~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~ 184 (331)
T 2r44_A 105 KGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTY 184 (331)
T ss_dssp ECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCC
T ss_pred cCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCC
Confidence 114667777777666666655554421 1233455555552221 0111 1123588999
Q ss_pred CCHHHHHHHHHHhhcc
Q 008394 107 LEYHHALELFSRHAFK 122 (567)
Q Consensus 107 L~~~~~~~l~~~~~~~ 122 (567)
.+.++-.+++......
T Consensus 185 p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 185 LDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhcccc
Confidence 9999999999887643
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.56 E-value=0.00033 Score=67.72 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=75.3
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh---c-------------------------cC--
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS---S-------------------------DF-- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---~-------------------------~f-- 50 (567)
++|++..+.++.+.+.........|.|+|.+|+|||++|+.+.+... . .|
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg 83 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTG 83 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC-
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCc
Confidence 58999999999988866333345788999999999999999987310 0 01
Q ss_pred -------------CceEEEEcCccccHHHHHHHHhhcCCC-----------CCCceEEEEeCChh---hh---------h
Q 008394 51 -------------EGSCFLENVREESQDQEESLIESLDWL-----------TPVCRIIITTRNKQ---VL---------R 94 (567)
Q Consensus 51 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~ilvTtR~~~---~~---------~ 94 (567)
.+.+++|++.....+....|...+... ....+||.||...- +. .
T Consensus 84 ~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~ 163 (304)
T 1ojl_A 84 ADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY 163 (304)
T ss_dssp --CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred hhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh
Confidence 246788888877766666665544321 13457777776531 11 0
Q ss_pred ccCcccEEEcCCCC--HHHHHHHHHH
Q 008394 95 NWGVRKIYEMEALE--YHHALELFSR 118 (567)
Q Consensus 95 ~~~~~~~~~l~~L~--~~~~~~l~~~ 118 (567)
.+. ...+.+++|. .+|...++..
T Consensus 164 Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 164 RLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred hcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 111 2357788988 4565555543
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=2.7e-05 Score=69.54 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=43.7
Q ss_pred CCcCCcEEecCCCccCCc----cCCcccCCCCCcEEEcCCCCCCCcCCccccCCCceeeccCccCcccChhhhccCCCcE
Q 008394 424 HLNKLVILNLRGSKSLKS----LPAGIFNLEFLTTLDLSGCPKLKRLPEISSSNTSCLFLSGTAIEELPSSIELLLRLEY 499 (567)
Q Consensus 424 ~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 499 (567)
..++|++|+|++|.+... +...+...++|++|+|++|.... .+...+...+...+.|++
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~-----------------~g~~~l~~~L~~n~~L~~ 125 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG-----------------SGILALVEALQSNTSLIE 125 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-----------------HHHHHHHHGGGGCSSCCE
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH-----------------HHHHHHHHHHHhCCCceE
Confidence 345666666666663221 23334445667777777643211 111123334444555666
Q ss_pred Eec--CCCccCcc----CcccccCCCCCcEEeccCCC
Q 008394 500 LDL--SDCKRLKS----LPSSLCKLKSLEILDLSGCS 530 (567)
Q Consensus 500 L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~~~ 530 (567)
|++ ++|.+... +...+...++|++|++++|.
T Consensus 126 L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 126 LRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 666 44553322 22233444566666666554
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=0.0008 Score=68.81 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=85.4
Q ss_pred CCCchHHHHHHHHHhcc-cC---------CCeEEEEEEcCCCChHHHHHHHHHHHHhc----------------------
Q 008394 1 MVGVESIVEEIESLLAV-ES---------KDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------- 48 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-~~---------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------- 48 (567)
++|.++.++++.+.+.. .. .-.+-|.|+|++|+|||+||+.++.....
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~ 97 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARV 97 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHH
Confidence 47888888888776542 10 12245889999999999999999864211
Q ss_pred ---------cCCceEEEEcCccccH--------------HHHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----Cc
Q 008394 49 ---------DFEGSCFLENVREESQ--------------DQEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----GV 98 (567)
Q Consensus 49 ---------~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~~ 98 (567)
.-++++|+|++..... .....+...+... ..+..||.||..++..+. + ..
T Consensus 98 r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRF 177 (476)
T 2ce7_A 98 RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRF 177 (476)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSS
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcc
Confidence 2246788887744211 2233333333211 234566667776644321 1 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+..+.+++.+.++-.++++.++.......+ ....+++.+.|..
T Consensus 178 d~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 178 DKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred eeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 347888888888888888776644322222 2455788888876
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0024 Score=64.16 Aligned_cols=69 Identities=13% Similarity=0.255 Sum_probs=41.7
Q ss_pred hhccCCCcEEecCCCccCccCc-ccccCCCCCcEEeccCCCCCccc-CcccCCCCCcceeccccccccccchhhhh
Q 008394 491 IELLLRLEYLDLSDCKRLKSLP-SSLCKLKSLEILDLSGCSNLQRL-PECLGQLSSLGTLLLEKPILREYQKASSK 564 (567)
Q Consensus 491 ~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~~p~~~~~ 564 (567)
+.++++|+.+.+.. . ...++ ..|.++.+|+.+.+..+ +..+ ...|.+|++|+.+.+-. .++.+++..+.
T Consensus 284 F~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~ 354 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFS 354 (394)
T ss_dssp TTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGT
T ss_pred cccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhh
Confidence 34444555555532 2 22233 34677788888888653 3333 34578888999988854 47778777663
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.46 E-value=0.0003 Score=78.33 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=37.8
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||++++.++.+.+.... ...+.|+|++|+|||++|+.+++.+
T Consensus 172 viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 172 VIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999996532 3457899999999999999999876
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.43 E-value=0.00048 Score=75.71 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++||+++++++.+.+.... ..-+.|+|++|+|||++|+.+.+.+
T Consensus 182 iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999996532 2358899999999999999999876
No 226
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.0059 Score=60.92 Aligned_cols=112 Identities=10% Similarity=0.129 Sum_probs=69.3
Q ss_pred ccCCCCCcEEEcCCCCCCCcCCcccc---CCCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCcccccCCCCC
Q 008394 446 IFNLEFLTTLDLSGCPKLKRLPEISS---SNTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLPSSLCKLKSL 521 (567)
Q Consensus 446 l~~l~~L~~L~Ls~~~~~~~~~~~~~---~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 521 (567)
+..+..|+.+.+..+ +..+..... .+|+.+.+.. .++.++. .+.++++|+.+.+.++.....-+..|.++.+|
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 445666666666543 222222222 2677777653 4556654 47788889988887765443334568888899
Q ss_pred cEEeccCCCCCcccC-cccCCCCCcceeccccccccccchhhh
Q 008394 522 EILDLSGCSNLQRLP-ECLGQLSSLGTLLLEKPILREYQKASS 563 (567)
Q Consensus 522 ~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~~p~~~~ 563 (567)
+.+.+..+ +..+. ..|.+|++|+.+.+..+ ++.+++..+
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 99888652 33443 45788888888887543 555655544
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.38 E-value=0.003 Score=64.81 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCchHHHHHHHHHhcc---cCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLAV---ESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|.++.++++..++.. +....+-+.++|++|+|||++|+.+.+.+.
T Consensus 39 iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 47888888876655432 222335799999999999999999988654
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.00075 Score=74.23 Aligned_cols=120 Identities=14% Similarity=0.242 Sum_probs=78.0
Q ss_pred CCCchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHHhccC-----------------------
Q 008394 1 MVGVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKISSDF----------------------- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f----------------------- 50 (567)
++|.++.++.+.+.+.... .....+.++|++|+|||++|+.+.+.....|
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g 539 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSC
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCC
Confidence 4788999988887775421 2234799999999999999999987542110
Q ss_pred ------------------CceEEEEcCccccHHHHHHHHhhcCCC----C-------CCceEEEEeCChh----------
Q 008394 51 ------------------EGSCFLENVREESQDQEESLIESLDWL----T-------PVCRIIITTRNKQ---------- 91 (567)
Q Consensus 51 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-------~~~~ilvTtR~~~---------- 91 (567)
..++++|.+.....+..+.|.+.+... . .+..||.||....
T Consensus 540 ~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~ 619 (758)
T 1r6b_X 540 YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGL 619 (758)
T ss_dssp SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC---------
T ss_pred CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCc
Confidence 246778888877777777777665421 0 2345777776421
Q ss_pred ------------hhhcc------CcccEEEcCCCCHHHHHHHHHHhh
Q 008394 92 ------------VLRNW------GVRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 92 ------------~~~~~------~~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
+...+ ..+..+.+++++.++..+++....
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 620 IHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp --------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 00011 112467888888888777777653
No 229
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.35 E-value=0.0025 Score=59.77 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCCchHHHHHHHHHhccc-C---------CCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 1 MVGVESIVEEIESLLAVE-S---------KDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-~---------~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
++|.++.+.++.++...- . .-.+-+.|+|++|+||||||+.++...
T Consensus 18 i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i 97 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 97 (254)
T ss_dssp CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHH
Confidence 467777777776554321 0 011238999999999999999997531
Q ss_pred -------hccCCceEEEEcCcccc--------------HHHHHHHHhhcCCCCC--CceEEEEeCChhhhhcc-----Cc
Q 008394 47 -------SSDFEGSCFLENVREES--------------QDQEESLIESLDWLTP--VCRIIITTRNKQVLRNW-----GV 98 (567)
Q Consensus 47 -------~~~f~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~--~~~ilvTtR~~~~~~~~-----~~ 98 (567)
...++..++++++.... ......+...+..+.. ...++.||..++..+.- ..
T Consensus 98 ~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf 177 (254)
T 1ixz_A 98 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRF 177 (254)
T ss_dssp HHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSS
T ss_pred HHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcC
Confidence 11244566677653211 1122333333322222 22344566665543321 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCC
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGV 140 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~gl 140 (567)
+..+.++..+.++-.++++..+.......+ ....+++.+.|.
T Consensus 178 ~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~ 220 (254)
T 1ixz_A 178 DRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 220 (254)
T ss_dssp CEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTC
T ss_pred CeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCC
Confidence 357889988998888888776533221111 244566666654
No 230
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.32 E-value=0.00059 Score=65.79 Aligned_cols=115 Identities=10% Similarity=0.112 Sum_probs=73.4
Q ss_pred CchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh---ccCCceEEEEcCc-ccc---------------
Q 008394 3 GVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS---SDFEGSCFLENVR-EES--------------- 63 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~---~~f~~~~~~~~~~-~~~--------------- 63 (567)
|-++.++.|.+.+..+. .+.+.++|++|+||||+|..+.+... ...+....++... +..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc
Confidence 55778888998886543 67999999999999999999987531 1233444444321 121
Q ss_pred -----------------HHHHHHHHhhcCCCCCCceEEEEeCCh-hhhhccCcccEEEcCCCCHHHHHHHHHHhh
Q 008394 64 -----------------QDQEESLIESLDWLTPVCRIIITTRNK-QVLRNWGVRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 64 -----------------~~~~~~l~~~~~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
....+.|...+.-..+.+.+|++|.++ .+...+... .++++++++++..+.+.+..
T Consensus 79 ~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 133344444443334566777666544 333333334 89999999999999998876
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.32 E-value=0.0031 Score=60.50 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=66.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh-----------------------------------ccCCceEEEEcCccccH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS-----------------------------------SDFEGSCFLENVREESQ 64 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~-----------------------------------~~f~~~~~~~~~~~~~~ 64 (567)
...+.+.++|++|+|||+||+.+++.+. ..-++++++|++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 3456789999999999999999976421 11356788887743322
Q ss_pred -------------HHHHHHHhhcC-------------CCCCCceEEEEeCChhhhhc-c----CcccEEEcCCCCHHHHH
Q 008394 65 -------------DQEESLIESLD-------------WLTPVCRIIITTRNKQVLRN-W----GVRKIYEMEALEYHHAL 113 (567)
Q Consensus 65 -------------~~~~~l~~~~~-------------~~~~~~~ilvTtR~~~~~~~-~----~~~~~~~l~~L~~~~~~ 113 (567)
.....|...+. ....+..||.||...+.... + .-+..+.+ | +.++-.
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~-P-~~~~r~ 191 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-P-TREDRI 191 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC-C-CHHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC-c-CHHHHH
Confidence 11233333321 11245677888876532211 1 11223444 3 888889
Q ss_pred HHHHHhhccCCCChHHHHHHHHHcCCCc
Q 008394 114 ELFSRHAFKQNHPDELSSKAVKYAQGVP 141 (567)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~i~~~c~glP 141 (567)
++++..........+....+.....|-.
T Consensus 192 ~Il~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (293)
T 3t15_A 192 GVCTGIFRTDNVPAEDVVKIVDNFPGQS 219 (293)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHSCSCC
T ss_pred HHHHHhccCCCCCHHHHHHHhCCCCccc
Confidence 9998776554444333333444444433
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.30 E-value=0.001 Score=72.25 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=86.0
Q ss_pred CCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHH-------------------------
Q 008394 2 VGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDK------------------------- 45 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~------------------------- 45 (567)
.|.++.+++|.+++.- +....+-|.++|++|.|||+||+.+++.
T Consensus 207 gGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~l 286 (806)
T 3cf2_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL 286 (806)
T ss_dssp CSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHH
Confidence 5788888888877532 1133567999999999999999999642
Q ss_pred ------HhccCCceEEEEcCccccH-----------HHHHHHHhhcCCCC--CCceEEEEeCChhhhh-cc----CcccE
Q 008394 46 ------ISSDFEGSCFLENVREESQ-----------DQEESLIESLDWLT--PVCRIIITTRNKQVLR-NW----GVRKI 101 (567)
Q Consensus 46 ------~~~~f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~--~~~~ilvTtR~~~~~~-~~----~~~~~ 101 (567)
.+..-++++|++++..... .....+...+.... .+-.||.||...+..+ .+ .-+..
T Consensus 287 r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~ 366 (806)
T 3cf2_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366 (806)
T ss_dssp HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEE
T ss_pred HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceE
Confidence 1233467888886654321 22333333332222 2334555665543322 12 12457
Q ss_pred EEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 102 YEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+++..-+.++-.++++.+..+.....+ ....+++++.|.-
T Consensus 367 I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp EECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred EecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 889888999989999877643322111 2567888888864
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.27 E-value=0.0047 Score=58.74 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCchHHHHHHHHHhccc-C---------CCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 1 MVGVESIVEEIESLLAVE-S---------KDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~-~---------~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
++|.++.++++.++...- . .-.+-+.|+|++|+||||||+.++...
T Consensus 42 i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i 121 (278)
T 1iy2_A 42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 121 (278)
T ss_dssp SSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHH
Confidence 467888777776655321 0 011238999999999999999986531
Q ss_pred -------hccCCceEEEEcCcccc--------------HHHHHHHHhhcCCCCCC--ceEEEEeCChhhhhcc-----Cc
Q 008394 47 -------SSDFEGSCFLENVREES--------------QDQEESLIESLDWLTPV--CRIIITTRNKQVLRNW-----GV 98 (567)
Q Consensus 47 -------~~~f~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~--~~ilvTtR~~~~~~~~-----~~ 98 (567)
...++..++++++.... ......+...+..+... ..++.+|..++..+.- ..
T Consensus 122 ~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf 201 (278)
T 1iy2_A 122 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRF 201 (278)
T ss_dssp HHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSS
T ss_pred HHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcC
Confidence 11344566777653211 12223333333322222 2344556655443221 22
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+..+.++..+.++-.+++...+.......+ ....+++.+.|..
T Consensus 202 ~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 202 DRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 357889988999888888876543222221 2445666666644
No 234
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00052 Score=61.94 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcccCC--CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 6 SIVEEIESLLAVESK--DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~--~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..++.+.+++..... ..+.+.|+|++|+|||+||+.+++........++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345556666644322 1268999999999999999999998765545555554
No 235
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.16 E-value=0.0025 Score=65.67 Aligned_cols=114 Identities=10% Similarity=0.092 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh------------------------------cc-
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS------------------------------SD- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~------------------------------~~- 49 (567)
++|+++.++.+...+..+. .|.|+|++|+|||+||+.+.+... ..
T Consensus 24 ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~ 99 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRY 99 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------
T ss_pred hHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhH
Confidence 5899999988887775443 799999999999999999865321 00
Q ss_pred ---------CCceEEEEcCccccHHHHHHHHhhcCCC---------CCCce-EEEEeCCh-h-------hhhccCcccEE
Q 008394 50 ---------FEGSCFLENVREESQDQEESLIESLDWL---------TPVCR-IIITTRNK-Q-------VLRNWGVRKIY 102 (567)
Q Consensus 50 ---------f~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~-ilvTtR~~-~-------~~~~~~~~~~~ 102 (567)
+..++++|++..........|...+... ....+ +|+||... . ....+ ...+
T Consensus 100 ~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF--~~~i 177 (500)
T 3nbx_X 100 ERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRM--LIRL 177 (500)
T ss_dssp CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTC--CEEE
T ss_pred HhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHH--HHHH
Confidence 1224788888777766666666655211 01122 36666421 1 11111 2357
Q ss_pred EcCCCCH-HHHHHHHHHhh
Q 008394 103 EMEALEY-HHALELFSRHA 120 (567)
Q Consensus 103 ~l~~L~~-~~~~~l~~~~~ 120 (567)
.+++.++ ++-.+++....
T Consensus 178 ~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 178 WLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ECCSCCCHHHHHHHHTCCC
T ss_pred HHHHhhhhhhHHHHHhccc
Confidence 7888876 55667777654
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.11 E-value=0.024 Score=56.46 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCceeeccCccCcccCh-hhhccCCCcEEecCCCccCccCc-ccccCCCCCcEEeccCCCCCcccCcccCCCCCcceecc
Q 008394 473 NTSCLFLSGTAIEELPS-SIELLLRLEYLDLSDCKRLKSLP-SSLCKLKSLEILDLSGCSNLQRLPECLGQLSSLGTLLL 550 (567)
Q Consensus 473 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 550 (567)
.|+.+.+..+ ++.++. .+..+.+|+.+.+..+ ...++ ..|.++.+|+.+.+.++....--...|.++++|+.+.|
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 4555555432 444433 3566677777777542 22333 34778888999888775544333456888889999888
Q ss_pred ccccccccchhhh
Q 008394 551 EKPILREYQKASS 563 (567)
Q Consensus 551 ~~~~l~~~p~~~~ 563 (567)
..+ ++.+++..+
T Consensus 318 p~~-l~~I~~~aF 329 (379)
T 4h09_A 318 PTA-LKTIQVYAF 329 (379)
T ss_dssp CTT-CCEECTTTT
T ss_pred Ccc-ccEEHHHHh
Confidence 643 677776655
No 237
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.08 E-value=0.0036 Score=61.67 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.+..++.+....... ....+.|+|++|+|||++|+.+.+..
T Consensus 26 i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 26 IVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp SCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhC
Confidence 578888666654443222 22349999999999999999998764
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.01 E-value=0.0036 Score=64.36 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=83.7
Q ss_pred CCCchHHHHHHHHHhcc-cC---------CCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 1 MVGVESIVEEIESLLAV-ES---------KDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-~~---------~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
++|.++.+.++.++... .. .-.+-|.|+|++|+||||||+.++...
T Consensus 33 v~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v 112 (499)
T 2dhr_A 33 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 112 (499)
T ss_dssp SCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHH
Confidence 47888888887766532 10 112349999999999999999997531
Q ss_pred h-------ccCCceEEEEcCcccc--------------HHHHHHHHhhcCCCC--CCceEEEEeCChhhhhc-c----Cc
Q 008394 47 S-------SDFEGSCFLENVREES--------------QDQEESLIESLDWLT--PVCRIIITTRNKQVLRN-W----GV 98 (567)
Q Consensus 47 ~-------~~f~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~--~~~~ilvTtR~~~~~~~-~----~~ 98 (567)
+ ..+++++++|++.... ...+..+...+..+. .+..++.+|..++..+. + ..
T Consensus 113 ~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRf 192 (499)
T 2dhr_A 113 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRF 192 (499)
T ss_dssp HHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSS
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCccccccccc
Confidence 1 1234678888764321 123344444443222 22345555666554332 1 12
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
+..+.++.-+.++-.++++.++.......+ ....+++.+.|..
T Consensus 193 dr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 193 DRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp CCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCC
T ss_pred ceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC
Confidence 357889988999888898877643222211 2456677777765
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=0.0025 Score=70.10 Aligned_cols=141 Identities=16% Similarity=0.229 Sum_probs=82.2
Q ss_pred CCCchHHHHHHHHHhcc-----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH-----------------------
Q 008394 1 MVGVESIVEEIESLLAV-----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI----------------------- 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~----------------------- 46 (567)
++|.++.+++|.+++.. .-.....|.|+|++|+||||||+.+....
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~ 285 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHH
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHH
Confidence 57888889988888753 11334579999999999999999996521
Q ss_pred --------hccCCceEEEEcCcccc-----------HHHHHHHHhhcCCC--CCCceEEEEeCChhhhhc-c----Cccc
Q 008394 47 --------SSDFEGSCFLENVREES-----------QDQEESLIESLDWL--TPVCRIIITTRNKQVLRN-W----GVRK 100 (567)
Q Consensus 47 --------~~~f~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~--~~~~~ilvTtR~~~~~~~-~----~~~~ 100 (567)
...++.+++++++.... ......+...+... ..+..++.||..+..... + ....
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~ 365 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCE
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccccc
Confidence 22456677888763221 12223333322211 123445555555432221 1 1224
Q ss_pred EEEcCCCCHHHHHHHHHHhhccCCCChH-HHHHHHHHcCCCc
Q 008394 101 IYEMEALEYHHALELFSRHAFKQNHPDE-LSSKAVKYAQGVP 141 (567)
Q Consensus 101 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~-~~~~i~~~c~glP 141 (567)
.+.+...+.++-.+++...+.......+ ....+++.+.|.-
T Consensus 366 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp EECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcc
Confidence 5778888899999999876643322111 1345555665543
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.00078 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
-..++|+|+.|+|||||++.++....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998653
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.96 E-value=0.0025 Score=70.86 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHHhc---c------------------C--
Q 008394 1 MVGVESIVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKISS---D------------------F-- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---~------------------f-- 50 (567)
++|.+..++.+...+.... .....+.|+|++|+|||++|+.+.+.... . |
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~ 639 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 639 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCC
Confidence 4799999998888775421 12358999999999999999999875411 0 0
Q ss_pred ---------------------CceEEEEcCccccHHHHHHHHhhcCCCC-----------CCceEEEEeCC
Q 008394 51 ---------------------EGSCFLENVREESQDQEESLIESLDWLT-----------PVCRIIITTRN 89 (567)
Q Consensus 51 ---------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~ilvTtR~ 89 (567)
..++++|.+.....+..+.|...+.... .+..||+||..
T Consensus 640 ~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 640 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp -----------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred CCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 1356777777777777777777765431 23447777764
No 242
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.80 E-value=0.0089 Score=55.67 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH---------hccC-------CceEEEEcCccccHHHHHHHH
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI---------SSDF-------EGSCFLENVREESQDQEESLI 71 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~---------~~~f-------~~~~~~~~~~~~~~~~~~~l~ 71 (567)
...+..++....+.-..|.|+|++|.|||.+|..+.+.+ ..+| ...+|.++..-.. +..+.++
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~~~~-d~~~~lr 168 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTA-KVVESAK 168 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCEET-TTHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEeccccchh-HHHHHHH
Confidence 345677775432334579999999999999999998752 2233 2334544332221 2222333
Q ss_pred hhcC--------C-----CCCCceEEEEeCChh------------hhhcc-CcccEEEcC--------CCCHHHHHHHHH
Q 008394 72 ESLD--------W-----LTPVCRIIITTRNKQ------------VLRNW-GVRKIYEME--------ALEYHHALELFS 117 (567)
Q Consensus 72 ~~~~--------~-----~~~~~~ilvTtR~~~------------~~~~~-~~~~~~~l~--------~L~~~~~~~l~~ 117 (567)
..+. . .-....+|+||...- ....+ .....++.. ++++++...+|.
T Consensus 169 ~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 169 AILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 3332 0 114567899998721 11112 112356666 799999999998
Q ss_pred Hh
Q 008394 118 RH 119 (567)
Q Consensus 118 ~~ 119 (567)
..
T Consensus 249 w~ 250 (267)
T 1u0j_A 249 WA 250 (267)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 243
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.78 E-value=0.0011 Score=65.84 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHHhc-------------ccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 1 MVGVESIVEEIESLLA-------------VESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~-------------~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|.+..++.+...+. ........|.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999888772 1112345799999999999999999998753
No 244
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.78 E-value=0.00077 Score=59.55 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhcccC-CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 4 VESIVEEIESLLAVES-KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 4 r~~~~~~l~~~L~~~~-~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+.++.+.+++..-. .....+.|+|++|+||||||+.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445555555554321 2346899999999999999999998764
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.015 Score=54.99 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=69.3
Q ss_pred CCchHHHHHHHHHhcc--cC---------CCeEEEEEEcCCCChHHHHHHHHHHHH------------------------
Q 008394 2 VGVESIVEEIESLLAV--ES---------KDVYCLGIWGIGGIGKTTIARAIFDKI------------------------ 46 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~--~~---------~~~~~i~I~G~gGvGKTtLa~~~~~~~------------------------ 46 (567)
.|.++.+++|.+.+.. .. .-.+-+.|+|++|+||||||+.++...
T Consensus 13 ~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i 92 (274)
T 2x8a_A 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 92 (274)
T ss_dssp CHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHH
Confidence 5677777777765421 00 111239999999999999999997531
Q ss_pred -------hccCCceEEEEcCccccH-----------HHHHHHHhhcCCCC--CCceEEEEeCChhhhhcc-----CcccE
Q 008394 47 -------SSDFEGSCFLENVREESQ-----------DQEESLIESLDWLT--PVCRIIITTRNKQVLRNW-----GVRKI 101 (567)
Q Consensus 47 -------~~~f~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~--~~~~ilvTtR~~~~~~~~-----~~~~~ 101 (567)
+..++++++++.+..... .....+...+.-+. ...-++.+|..+++.+.. .-+..
T Consensus 93 ~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~ 172 (274)
T 2x8a_A 93 RQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKT 172 (274)
T ss_dssp HHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEE
T ss_pred HHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeE
Confidence 123455666665543211 11122222222111 223455667766554331 23457
Q ss_pred EEcCCCCHHHHHHHHHHhh
Q 008394 102 YEMEALEYHHALELFSRHA 120 (567)
Q Consensus 102 ~~l~~L~~~~~~~l~~~~~ 120 (567)
+.++.-+.++-.++++...
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 8898889999889988765
No 246
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.72 E-value=0.0067 Score=63.51 Aligned_cols=120 Identities=24% Similarity=0.310 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHhcc----cCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc---------------------------
Q 008394 1 MVGVESIVEEIESLLAV----ESKDVYCLGIWGIGGIGKTTIARAIFDKISSD--------------------------- 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--------------------------- 49 (567)
++|.++..+.+.+.+.- .......+.|+|++|+||||+|+.++......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 36777777776554432 11234589999999999999999997643211
Q ss_pred ------------CCceEEEEcCccccHH----HHHHHHhhcCCCC---------------CCceEEEEeCChhhhh-cc-
Q 008394 50 ------------FEGSCFLENVREESQD----QEESLIESLDWLT---------------PVCRIIITTRNKQVLR-NW- 96 (567)
Q Consensus 50 ------------f~~~~~~~~~~~~~~~----~~~~l~~~~~~~~---------------~~~~ilvTtR~~~~~~-~~- 96 (567)
...++++|.+.....+ ..+.+...+.... ....+|.||....... .+
T Consensus 163 ~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~ 242 (543)
T 3m6a_A 163 GRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLR 242 (543)
T ss_dssp -CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHH
T ss_pred hHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHH
Confidence 2235566666555443 2233444332110 2235555655443211 11
Q ss_pred CcccEEEcCCCCHHHHHHHHHHhh
Q 008394 97 GVRKIYEMEALEYHHALELFSRHA 120 (567)
Q Consensus 97 ~~~~~~~l~~L~~~~~~~l~~~~~ 120 (567)
..-..+.+++++.++-.+++..+.
T Consensus 243 ~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 243 DRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHEEEEECCCCCHHHHHHHHHHTH
T ss_pred hhcceeeeCCCCHHHHHHHHHHHH
Confidence 111468999999999999888764
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.0031 Score=56.74 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHhccc-CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 3 GVESIVEEIESLLAVE-SKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 3 Gr~~~~~~l~~~L~~~-~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|++.+++|.+.+... .+...+|+|.|+.|+||||+++.+...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4677788888777542 24557999999999999999999988764
No 248
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.67 E-value=0.00066 Score=64.33 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHhcc----------cCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLAV----------ESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.++.++++.+.+.. .....+-+.|+|++|+|||++|+.+++..
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 57888888888877642 01122348899999999999999998864
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.66 E-value=0.002 Score=58.38 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+.+++|.+.+....+...+|+|+|+.|+|||||++.+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666644334557999999999999999999987765
No 250
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0047 Score=51.09 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=46.6
Q ss_pred eEEeeCCCCCC--CCCCCCCCCCceEEEccCCcccccchhhhhhccCCcEEecccCcc
Q 008394 356 KYLHWHGYPLK--SMPSNICAEQLVFLEVPNSSIEQLWDGMKQHRGKLNQIIHATCKM 411 (567)
Q Consensus 356 ~~L~l~~~~~~--~l~~~~~~~~L~~L~l~~n~i~~l~~~~~~~l~~L~~L~l~~~~~ 411 (567)
..++.+++.++ .+|..+ ..+|+.|+|++|+|+.++.+.+..+++|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 888653 46799999999999999999888889999999998864
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.44 E-value=0.0013 Score=57.74 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|.|.|++|+||||+|+.+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999998754
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.41 E-value=0.0027 Score=61.65 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=37.1
Q ss_pred CCCchHHHHHHHHHhcc--cCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 1 MVGVESIVEEIESLLAV--ESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
+|+.+...+++.+.+.. ..+....|+|+|++|+||||+++.++..+...|
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45666777777777643 335566799999999999999999988765444
No 253
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.35 E-value=0.0048 Score=58.88 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=25.7
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 19 SKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 19 ~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
.+...+|+|+|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 455679999999999999999999887653
No 254
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.32 E-value=0.0042 Score=57.74 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+.++.+...........|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445554444334456789999999999999999998765
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.30 E-value=0.0021 Score=56.10 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=22.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|.|++|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.28 E-value=0.0034 Score=68.11 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=67.5
Q ss_pred CCchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHH-------------------------
Q 008394 2 VGVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDK------------------------- 45 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~------------------------- 45 (567)
.|.++.+++|.+.+.-. ....+-|.++|++|.|||.+|++++..
T Consensus 480 ggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~v 559 (806)
T 3cf2_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 559 (806)
T ss_dssp CSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHH
Confidence 46777788877765321 122456899999999999999999652
Q ss_pred ------HhccCCceEEEEcCccccH--------------HHHHHHHhhcCCCCCCc--eEEEEeCChhhhhc-c----Cc
Q 008394 46 ------ISSDFEGSCFLENVREESQ--------------DQEESLIESLDWLTPVC--RIIITTRNKQVLRN-W----GV 98 (567)
Q Consensus 46 ------~~~~f~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~--~ilvTtR~~~~~~~-~----~~ 98 (567)
.+..-++++|+|.+..... .....+...+.-..... -||.||..++..+. + .-
T Consensus 560 r~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRf 639 (806)
T 3cf2_A 560 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRL 639 (806)
T ss_dssp HHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTS
T ss_pred HHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcc
Confidence 2334578999886665432 22344444443333322 23334544432221 1 22
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhccCCCC-hHHHHHHHHHcCCC
Q 008394 99 RKIYEMEALEYHHALELFSRHAFKQNHP-DELSSKAVKYAQGV 140 (567)
Q Consensus 99 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~c~gl 140 (567)
+..+.++.-+.++-.++|+.+..+.... +.-...+++.+.|.
T Consensus 640 d~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 640 DQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 682 (806)
T ss_dssp CCEEEC-----CHHHHTTTTTSSCC--CCC-------------
T ss_pred eEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCC
Confidence 4567777666667777777665432211 11244566666553
No 257
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.28 E-value=0.0032 Score=62.88 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCCchHHHHHHHHHhc----c------------------------cCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 1 MVGVESIVEEIESLLA----V------------------------ESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~----~------------------------~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|.++.++.|...+. . .......+.|+|++|+|||++|+.+++..
T Consensus 23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4788888888887762 0 01123469999999999999999998865
No 258
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.27 E-value=0.0024 Score=57.35 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.++|+|+|++|+||||+|+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.22 E-value=0.0024 Score=56.47 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.|.|+|++|+||||+|+.+.+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 260
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.21 E-value=0.0063 Score=58.73 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccCC-CeEEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEE
Q 008394 6 SIVEEIESLLAVESK-DVYCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLE 57 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~-~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~ 57 (567)
..++.+.+++....+ ....+.|+|++|+|||+||..+++.+. ..-..+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345555566654222 246899999999999999999999866 4433444443
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0058 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..|+|.|++|+||||+|+.+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998763
No 262
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.07 E-value=0.0069 Score=54.36 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+|+|+|+.|+||||+|+.+...+...-...++++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 3469999999999999999999988753222223554
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.05 E-value=0.0029 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.+|+|.|++|+||||+|+.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37999999999999999999 44
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.05 E-value=0.011 Score=48.82 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=36.9
Q ss_pred EEEcCCCCCC-CcCCccccCCCceeeccCccCcccChh-hhccCCCcEEecCCCccC
Q 008394 454 TLDLSGCPKL-KRLPEISSSNTSCLFLSGTAIEELPSS-IELLLRLEYLDLSDCKRL 508 (567)
Q Consensus 454 ~L~Ls~~~~~-~~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~ 508 (567)
.++.+++... ..+|..+..++++|+|++|.|+.+|.. |..+++|++|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444443221 155555555666666667888888765 788889999999988754
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.03 E-value=0.0039 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+|.|.|++|+||||+|+++.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 266
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.03 E-value=0.0019 Score=57.02 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.|+|+|++|+|||||++++.++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999887653
No 267
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.01 E-value=0.011 Score=54.12 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=29.4
Q ss_pred HHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 8 VEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 8 ~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
.+++.+.+. .....+|+|+|.+|+|||||+.++.......
T Consensus 26 a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444442 2356789999999999999999998875444
No 268
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.99 E-value=0.0069 Score=58.47 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++.++|+|+|=|||||||.|..+.-.+...-..+..+|
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999999999999999999887655444455455
No 269
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.0072 Score=55.09 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCc
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEG 52 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~ 52 (567)
+..+++.+.+. .+..++|+|+|.+|+|||||+.++.......+..
T Consensus 16 ~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~ 60 (221)
T 2wsm_A 16 RLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKI 60 (221)
T ss_dssp HHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeE
Confidence 44455555553 2356799999999999999999998876544433
No 270
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.97 E-value=0.015 Score=57.38 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++.+.+....++..+|+|+|.+|+||||++..+.....
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443445678999999999999999999987754
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.97 E-value=0.0075 Score=52.16 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCFL 56 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~~ 56 (567)
..++++|+|..|+||||++.++...++.. +.....-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 35689999999999999999999887544 5554433
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.93 E-value=0.0084 Score=53.04 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
...+|.|.|++|+||||+++.+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4468999999999999999999988754
No 273
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.92 E-value=0.014 Score=56.41 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..++|+|+|.+|+||||++..++..+...-..+.+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999887654433344443
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.89 E-value=0.0053 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.89 E-value=0.0047 Score=53.65 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+.|+|.|+.|+||||+|+.+.+.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.88 E-value=0.016 Score=55.67 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=31.3
Q ss_pred HHHHHHHhccc------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 8 VEEIESLLAVE------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 8 ~~~l~~~L~~~------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
.++|.+.+... .+...+|+|+|++|+||||++..++..++..
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 84 KEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 44566666432 1345799999999999999999999876544
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.84 E-value=0.0036 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+.|.|.|++|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.84 E-value=0.0052 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..|+|.|++|+||||+|+.+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999987753
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.83 E-value=0.0048 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 280
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.80 E-value=0.0094 Score=52.94 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.-++.+..++... +.-..+.|+|++|+||||+|..+++.+
T Consensus 43 ~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456666666432 233479999999999999999998865
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.78 E-value=0.0068 Score=54.94 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...++|.|.|++|+||||.|+.+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999875
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.77 E-value=0.0056 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=22.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|+|.|++|+||||+|+.+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4799999999999999999988753
No 283
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.77 E-value=0.0043 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|.|.|++|+||||+|+.+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999988753
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.76 E-value=0.0084 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|+|.|+.|+||||+++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998776
No 285
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.74 E-value=0.0056 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
..+++|+|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999754
No 286
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.018 Score=52.31 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccccHHHHHHH
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREESQDQEESL 70 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l 70 (567)
.|.+++..+=..-.++.|+|.+|+||||+|..+.. ..-..++|++.-.......+...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHH
Confidence 34445532112335999999999999999999987 22345666665443333444443
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.74 E-value=0.018 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
...+++|+|+.|+||||+++.+....+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999876653
No 288
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.72 E-value=0.0055 Score=55.04 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 289
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.72 E-value=0.011 Score=53.29 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
..|+|.|++|+||||+|+.+.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999998875433
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.71 E-value=0.0042 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.68 E-value=0.011 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
....+|.|.|++|+||||+|+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 292
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.68 E-value=0.0047 Score=55.53 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 293
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.63 E-value=0.011 Score=59.63 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCchHHHHHHHHHhccc------------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 1 MVGVESIVEEIESLLAVE------------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~------------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
++|.++.++.|...+... ....+-|.++|++|+||||+|+.++..+...
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 478888888887666220 1124569999999999999999999876443
No 294
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.61 E-value=0.012 Score=53.26 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
...|+|.|+.|+||||+|+.+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999887544
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.60 E-value=0.0064 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=22.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+|+|.|++|+||||+|+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 296
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.59 E-value=0.0076 Score=53.49 Aligned_cols=65 Identities=15% Similarity=0.015 Sum_probs=31.9
Q ss_pred hhhccCCCcEEecCCCccCcc----CcccccCCCCCcEEeccCCCC--Cc-----ccCcccCCCCCcceecccccc
Q 008394 490 SIELLLRLEYLDLSDCKRLKS----LPSSLCKLKSLEILDLSGCSN--LQ-----RLPECLGQLSSLGTLLLEKPI 554 (567)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~--~~-----~~p~~l~~l~~L~~L~l~~~~ 554 (567)
.+..-+.|++|+|++|.+... +-..+..-+.|++|++++|.. .+ .+.+.+...+.|+.|+++.|.
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344445566666666554322 222344445566666664321 11 122334455666666666554
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.58 E-value=0.0089 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999998764
No 298
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.58 E-value=0.0053 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|+|.|++|+||||+|+.+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999988753
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.58 E-value=0.011 Score=52.31 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|.|+.|+||||+++.+.. ...+.++++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA----QLDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH----HSSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhc----ccCCeEEEc
Confidence 4799999999999999999975 233445554
No 300
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.56 E-value=0.024 Score=56.99 Aligned_cols=36 Identities=22% Similarity=0.112 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
...+|.++|.+|+||||++.+++..++..-..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998776543333333
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.55 E-value=0.0089 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...|+|.|++|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.55 E-value=0.0067 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.++|+|+|++|+||||+++.+.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998765
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0088 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+|+|.|++|+||||+|+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998775
No 304
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.54 E-value=0.0077 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998654
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.53 E-value=0.008 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
....|+|+|+.|+||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999876
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.51 E-value=0.0062 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|.|++|+||||+|+.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999988753
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.49 E-value=0.0091 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 308
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.48 E-value=0.024 Score=57.23 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 7 IVEEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 7 ~~~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
..+++.+++.... ...++|.++|.+|+||||+|.++...++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3456666665321 346799999999999999999999877554
No 309
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.47 E-value=0.0093 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|.|.|++|+||||+|+.+.+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 310
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.46 E-value=0.021 Score=54.56 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..+++++|.+|+||||++..+...+...-..+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 579999999999999999999887654433344444
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.46 E-value=0.0048 Score=54.38 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|.|.|++|+||||+|+.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987754
No 312
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.44 E-value=0.0091 Score=51.70 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988754
No 313
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.43 E-value=0.0089 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|.|++|+||||+|+.+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998764
No 314
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.41 E-value=0.023 Score=57.19 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
...+|.++|++|+||||++..+...++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998876543
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.40 E-value=0.028 Score=51.39 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------cCCceEEEEcCccccHHHHHHHHh
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------DFEGSCFLENVREESQDQEESLIE 72 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~l~~ 72 (567)
.|.+.+..+-..-.+++|+|+.|+|||||++.++-.... .-...+|++............+.+
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 344445222123369999999999999999999875432 133466776544333333333333
No 316
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.37 E-value=0.0087 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998763
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.36 E-value=0.0097 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...|+|.|++|+||||+|+.+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.36 E-value=0.011 Score=53.10 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+...+|+|.|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999864
No 319
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.36 E-value=0.014 Score=54.59 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
....+|.|.|++|+||||+|+.+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999987753
No 320
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.33 E-value=0.016 Score=55.49 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...+++|+|++|+||||++..+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999988765
No 321
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.33 E-value=0.028 Score=50.79 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=30.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEEcCccccHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLENVREESQDQEESL 70 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~l 70 (567)
.|.+.|.||+||||+|..+..... ..++..+...+. +.....|..+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~-q~~~~~~al~ 54 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET-HGRAETEALL 54 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-TTCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC-CCChhHHHHh
Confidence 488999999999999999988754 445554433333 3333444443
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.32 E-value=0.01 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998653
No 323
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.30 E-value=0.028 Score=51.85 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=33.6
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------cCCceEEEEcCc
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------DFEGSCFLENVR 60 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------~f~~~~~~~~~~ 60 (567)
.|.++|..+=..-.++.|+|++|+|||||+..+...+.. .-..++|++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 445555321122349999999999999999999876322 134567776544
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.30 E-value=0.011 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|+|.|++|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988753
No 325
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.27 E-value=0.031 Score=53.54 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
...+++|+|+.|+||||+++.++...+.. .+.+++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 35699999999999999999998876543 34444443
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.23 E-value=0.011 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998753
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.23 E-value=0.0075 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999987654
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.22 E-value=0.011 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+|+|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998654
No 329
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.21 E-value=0.019 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
+|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.18 E-value=0.012 Score=53.25 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..+|+|.|+.|+||||+|+.+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999988654
No 331
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.17 E-value=0.012 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|+|+|+.|+||||+++.+.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999876
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.15 E-value=0.013 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987653
No 333
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.15 E-value=0.014 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.++|+|+.|+|||||++.+...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 334
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.14 E-value=0.021 Score=54.99 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=29.0
Q ss_pred HHHHHhccc--CCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 10 EIESLLAVE--SKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 10 ~l~~~L~~~--~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+...+... ....++|+|+|-||+||||+|..+...+...-..++.+|
T Consensus 27 ~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 27 SVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344444332 245689999999999999999999987755433444454
No 335
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.14 E-value=0.038 Score=54.08 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=36.8
Q ss_pred HHHHHHhc-ccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccc
Q 008394 9 EEIESLLA-VESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREE 62 (567)
Q Consensus 9 ~~l~~~L~-~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 62 (567)
.+|...|. .+=..-+++.|+|++|+||||||.++...+...-..++|++.-...
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 34555553 1112346999999999999999999998765443456777655444
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.14 E-value=0.0091 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.126 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.13 E-value=0.011 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 338
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.12 E-value=0.022 Score=60.54 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
++|.+..++.+...+..+ ..+.|+|++|+||||||+.+........
T Consensus 43 i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp CCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred EECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 578888898888888544 3899999999999999999998764433
No 339
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.10 E-value=0.015 Score=52.45 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...+|+|.|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987654
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.08 E-value=0.012 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
....+|+|+|++|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999988754
No 341
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.07 E-value=0.013 Score=54.20 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=27.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLEN 58 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~ 58 (567)
.++.|.|++|+||||+|.+++......-..++|++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 489999999999999999987765433345566653
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.06 E-value=0.012 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...|+|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998764
No 343
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.05 E-value=0.01 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998754
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.05 E-value=0.021 Score=55.06 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+...+|+|.|+.|+||||+|+.+...+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566999999999999999999987665
No 345
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.02 E-value=0.04 Score=56.64 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHhcccC-------CCeEEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEEEEcC
Q 008394 9 EEIESLLAVES-------KDVYCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCFLENV 59 (567)
Q Consensus 9 ~~l~~~L~~~~-------~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~~~~~ 59 (567)
++|.+++.... ...++|+|+|.+|+||||++.++...++.. ....+.-.+.
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 45566664321 346799999999999999999998876543 4444333334
No 346
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.01 E-value=0.024 Score=54.39 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+|+|+|++|+||||+++.+....+.. .+.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999876543 3444444
No 347
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.00 E-value=0.04 Score=53.99 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=28.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+++|+|+.|+||||+++.++..++.. ...+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 35699999999999999999999876543 3444444
No 348
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.00 E-value=0.016 Score=53.02 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|++|+|||||++.+.......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999876543333455554
No 349
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.99 E-value=0.015 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.95 E-value=0.016 Score=54.04 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
....+|+|.|+.|+||||+|+.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4557899999999999999999988654
No 351
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.94 E-value=0.013 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEEcCCCChHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIF 43 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~ 43 (567)
.+++|+|+.|+|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999843
No 352
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.93 E-value=0.028 Score=52.58 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...++++.|.||+||||++..+...+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998766
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.90 E-value=0.017 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 354
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.89 E-value=0.033 Score=48.76 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|+|.|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999988764
No 355
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.88 E-value=0.017 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+|.|.|++|+||+|.|+.+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999874
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.86 E-value=0.018 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
-.+|+|.|+.|+||||+|+.+.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.86 E-value=0.016 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 358
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.84 E-value=0.027 Score=55.33 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=30.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCcc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVRE 61 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 61 (567)
+++.|+|.+|+||||||.++...+...-..++|++.-..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 589999999999999999998876544446777775443
No 359
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.83 E-value=0.021 Score=51.65 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...+|+|.|+.|+||||+|+.+.+.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988764
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.83 E-value=0.0087 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998765
No 361
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.81 E-value=0.02 Score=57.85 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
.++|+|+|.+|+||||+|.++....+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999887643
No 362
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.80 E-value=0.013 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|+|+.|+||||+++.+...+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999998653
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.79 E-value=0.031 Score=48.66 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc-cCCceE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS-DFEGSC 54 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~-~f~~~~ 54 (567)
.++++|+|..|+|||||+..+...+.. .+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~ 39 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 39 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeE
Confidence 468999999999999999999987643 344433
No 364
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.79 E-value=0.017 Score=52.01 Aligned_cols=22 Identities=50% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.77 E-value=0.017 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998764
No 366
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.75 E-value=0.028 Score=55.09 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVR 60 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~ 60 (567)
-+++.|+|.+|+||||||.++...+...=..++|++.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 358999999999999999999877654444567776543
No 367
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.72 E-value=0.016 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 368
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.70 E-value=0.048 Score=55.47 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+++|+|..|+||||+++.+...++.. .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35699999999999999999998776533 3444454
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.68 E-value=0.018 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..|+|.|+.|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 370
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.67 E-value=0.019 Score=55.56 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|.|+.|+||||||..+++.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 371
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.66 E-value=0.067 Score=50.95 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=31.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc--CCceEEEEcCccccH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSD--FEGSCFLENVREESQ 64 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~ 64 (567)
++-|+|++|+||||||.++....... -..++|++.-.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 78999999999999999998776544 345778876555433
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.65 E-value=0.02 Score=55.17 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
....+|+|.|+.|+|||||++.+..-+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 44579999999999999999999876643
No 373
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.63 E-value=0.02 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...|+|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 374
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.62 E-value=0.037 Score=52.03 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=27.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|.|-||+||||+|..+...+...-..+..+|
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999988765433445554
No 375
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.62 E-value=0.02 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|.|++|+||||+|+.+.+.+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987753
No 376
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.61 E-value=0.014 Score=51.80 Aligned_cols=75 Identities=13% Similarity=0.009 Sum_probs=52.6
Q ss_pred ccChhhhccCCCcEEecCCCccCcc----CcccccCCCCCcEEeccCCCCCcc----cCcccCCCCCcceeccccccccc
Q 008394 486 ELPSSIELLLRLEYLDLSDCKRLKS----LPSSLCKLKSLEILDLSGCSNLQR----LPECLGQLSSLGTLLLEKPILRE 557 (567)
Q Consensus 486 ~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~~ 557 (567)
.+-..+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+... +.+.+..-+.|+.|+|++|....
T Consensus 61 ~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ 140 (197)
T 1pgv_A 61 SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV 140 (197)
T ss_dssp HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC
Confidence 3445566678899999999986533 333355568999999999988643 33456677789999998764433
Q ss_pred cch
Q 008394 558 YQK 560 (567)
Q Consensus 558 ~p~ 560 (567)
+.+
T Consensus 141 ig~ 143 (197)
T 1pgv_A 141 LGN 143 (197)
T ss_dssp CCH
T ss_pred cCH
Confidence 433
No 377
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.58 E-value=0.034 Score=52.06 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
-.+++|+|+.|+||||+++.+...+...+.+.+++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 359999999999999999999887655545666554
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.58 E-value=0.012 Score=56.90 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|+|+|+.|+||||||..+++++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999998654
No 379
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.58 E-value=0.017 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|+|+|+.|+||||||+.+.+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999864
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.57 E-value=0.022 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.55 E-value=0.022 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.53 E-value=0.019 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+++|+|+.|+|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 599999999999999999998764
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.49 E-value=0.017 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 384
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.47 E-value=0.047 Score=52.77 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
-.++.|.|.+|+||||+|.+++..+...-..++|++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 359999999999999999999876533224455554
No 385
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.46 E-value=0.025 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...+|+|.|+.|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 386
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.46 E-value=0.076 Score=52.00 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=38.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCC-ceEEEEcCccccHHHHHHHHhhcCCCCCCceEEEEeCChh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFE-GSCFLENVREESQDQEESLIESLDWLTPVCRIIITTRNKQ 91 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~ 91 (567)
+.++|+|.+|+|||||++.+.+.+.+..+ ..+.+..+.+...+ ...+...+ .+.|++.|-++.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~E-v~~~~~~~-----~~~vV~atadep 238 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE-VTEMQRLV-----KGEVVASTFDEP 238 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHH-HHHHHTTC-----SSEEEEECTTSC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHH-HHHHHHHh-----CeEEEEeCCCCC
Confidence 58999999999999999999987654332 22333444444333 33344443 245555555543
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.45 E-value=0.023 Score=51.71 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35999999999999999999987643
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.45 E-value=0.026 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.+|+|.|+.|+||||+++.+.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 389
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.43 E-value=0.035 Score=51.48 Aligned_cols=35 Identities=29% Similarity=0.202 Sum_probs=25.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||++.+..... ..-..++++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5999999999999999999985322 2333444444
No 390
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.43 E-value=0.12 Score=50.56 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=37.7
Q ss_pred HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc------cCCceEEEEcCccccHHHHHHH
Q 008394 11 IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS------DFEGSCFLENVREESQDQEESL 70 (567)
Q Consensus 11 l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~l 70 (567)
|..+|..+=..-.++.|+|.+|+||||+|.+++..+.. .-..++|++.-......++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 44444322234469999999999999999999877432 2245667765554333444333
No 391
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.43 E-value=0.042 Score=52.38 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.++|+|.|-||+||||+|..+...+...-..+..+|
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 368888999999999999999987654433344444
No 392
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.43 E-value=0.078 Score=51.81 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 19 SKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 19 ~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..+..+|+|+|.+|+||||++..+......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 356679999999999999999999876543
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.42 E-value=0.025 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.782 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
...+|+|.|+.|+||||+|+.+.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 394
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.40 E-value=0.074 Score=51.59 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=33.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc------CCceEEEEcCccccHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD------FEGSCFLENVREESQDQEESLI 71 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~l~ 71 (567)
.++.|+|.+|+||||+|.++...+... -..++|++.-......++....
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999998775322 2456777655443334443333
No 395
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.37 E-value=0.036 Score=56.94 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 4 VESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 4 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
|.+..+.+.+..........+|.+.|++|+||||+|+.+.+++..
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444445555555322234578999999999999999999999864
No 396
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.36 E-value=0.025 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988754
No 397
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.36 E-value=0.026 Score=48.29 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.-.+++|.|+.|.|||||++.+..-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34599999999999999999998765
No 398
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.35 E-value=0.026 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
++|+|.|+.|+||||||..+++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998764
No 399
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.34 E-value=0.045 Score=52.25 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+++|+|.+|+||||++..++......-..+.+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3569999999999999999999987654433334443
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.015 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
++++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999876543
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.29 E-value=0.049 Score=49.87 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998765
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.047 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998754
No 403
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.25 E-value=0.029 Score=53.30 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
..++|+|.|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 404
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.22 E-value=0.049 Score=48.90 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCce
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGS 53 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~ 53 (567)
+.|+|-|+-|+||||+++.+.+.+.+.++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 4799999999999999999999886655443
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.22 E-value=0.026 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+++|+|+.|+|||||++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988765
No 406
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.18 E-value=0.048 Score=53.90 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344699999999999999999998754
No 407
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.16 E-value=0.031 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+++.|+|++|+|||+||.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999876
No 408
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.07 E-value=0.049 Score=53.64 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=31.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEEcCccc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLENVREE 62 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 62 (567)
+++.|+|.+|+||||||.++...+...-..++|++.-...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 4899999999999999999988765444567777755433
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.06 E-value=0.031 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.00 E-value=0.05 Score=52.04 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=23.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
.+++|.|++|+|||||++.++..+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 49999999999999999999887653
No 411
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.98 E-value=0.053 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.++.|+|++|+|||||+..+...+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999987654
No 412
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.97 E-value=0.055 Score=47.61 Aligned_cols=25 Identities=24% Similarity=-0.025 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+++.|+|+.|+||||++.++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999987776653
No 413
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.97 E-value=0.12 Score=50.73 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcc--C---Cc-eEEEEcCccccHHHHHHHHhh
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSD--F---EG-SCFLENVREESQDQEESLIES 73 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~--f---~~-~~~~~~~~~~~~~~~~~l~~~ 73 (567)
.-.++.|+|++|+|||||+..++-.+... . .. ++|++........++..+.+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~ 188 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 188 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 34699999999999999999998765211 1 23 377776443333344444433
No 414
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.94 E-value=0.1 Score=51.74 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCeEEEEEEc-CCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWG-IGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G-~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++.++|+|+| -||+||||+|..++..+...-..++.+|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578999986 9999999999999987755444455555
No 415
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.85 E-value=0.04 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998753
No 416
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.83 E-value=0.31 Score=47.49 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=87.0
Q ss_pred HHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHh-ccCCc-----------------------------eEEEEcCc
Q 008394 11 IESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKIS-SDFEG-----------------------------SCFLENVR 60 (567)
Q Consensus 11 l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~-----------------------------~~~~~~~~ 60 (567)
+.+.+. + +-.++..++|+.|.||++.|..+.+.+. ..|+. +++++...
T Consensus 9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 444443 2 3456999999999999999999987643 23321 22333333
Q ss_pred c-ccHHHHHHHHhhcCCCCCCceEEEEeCC-------hhhhhcc-CcccEEEcCCCCHHHHHHHHHHhhccCC--CChHH
Q 008394 61 E-ESQDQEESLIESLDWLTPVCRIIITTRN-------KQVLRNW-GVRKIYEMEALEYHHALELFSRHAFKQN--HPDEL 129 (567)
Q Consensus 61 ~-~~~~~~~~l~~~~~~~~~~~~ilvTtR~-------~~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~ 129 (567)
. ......+.|...+....+++.+|++|.. ..+...+ .....++..+++.++..+.+.+.+...+ -.++.
T Consensus 87 ~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a 166 (343)
T 1jr3_D 87 NGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAA 166 (343)
T ss_dssp SCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHH
T ss_pred CCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3 2334555566655544567777766643 1233332 2235789999999999988888775443 34457
Q ss_pred HHHHHHHcCCCchHHHHH
Q 008394 130 SSKAVKYAQGVPLALKVL 147 (567)
Q Consensus 130 ~~~i~~~c~glPLai~~~ 147 (567)
++.+++.++|.+.++...
T Consensus 167 ~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 167 NQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHH
Confidence 889999999988777654
No 417
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.81 E-value=0.036 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999998864
No 418
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.81 E-value=0.021 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=16.0
Q ss_pred EEEEEEcCCCChHHHHHHHHH-HHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIF-DKI 46 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~-~~~ 46 (567)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 553
No 419
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.78 E-value=0.04 Score=53.08 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
+...+|+|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987664
No 420
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.73 E-value=0.18 Score=44.75 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.|+|-|+-|+||||.++.+++.+++.-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999998876554455444
No 421
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.69 E-value=0.072 Score=51.68 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=27.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.++.|.|.+|+||||+|..++..+...=..++|++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 49999999999999999999887654334455554
No 422
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.66 E-value=0.076 Score=51.88 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh--ccCCceEEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS--SDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~--~~f~~~~~~~ 57 (567)
+..+++.+.|-||+||||+|..+...+. ..-..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4457999999999999999999998876 4444444454
No 423
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.62 E-value=0.072 Score=55.24 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
...+|.++|++|+||||+|+++.+.+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999988765444
No 424
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.61 E-value=0.048 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999874
No 425
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.59 E-value=0.04 Score=55.12 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 9 EEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 9 ~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.++.+.|........+++|+|+.|+|||||.+.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344444443334556999999999999999999985
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.58 E-value=0.025 Score=53.95 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
..+|+|.|..|+||||+|+.+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999988654
No 427
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.58 E-value=0.039 Score=50.89 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=26.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. ....+.++++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEC
Confidence 699999999999999999987543 2334556554
No 428
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.57 E-value=0.045 Score=54.08 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
++|+|.|+.|+||||||..+++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 429
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.56 E-value=0.25 Score=48.72 Aligned_cols=117 Identities=24% Similarity=0.245 Sum_probs=70.1
Q ss_pred CCCchHHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc---------------------------cC---
Q 008394 1 MVGVESIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS---------------------------DF--- 50 (567)
Q Consensus 1 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~---------------------------~f--- 50 (567)
++|.+..+.++.+.+..-......|.|+|.+|.||+++|+.+.+.-.. .|
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga 210 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGA 210 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSC
T ss_pred ccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCc
Confidence 356666666666665442222235789999999999999999764211 12
Q ss_pred ------------CceEEEEcCccccHHHHHHHHhhcCCC------CC-----CceEEEEeCChhhhhccC----------
Q 008394 51 ------------EGSCFLENVREESQDQEESLIESLDWL------TP-----VCRIIITTRNKQVLRNWG---------- 97 (567)
Q Consensus 51 ------------~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~-----~~~ilvTtR~~~~~~~~~---------- 97 (567)
.+.++++.+.+........|...+... +. ..+||.+|... ....+.
T Consensus 211 ~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~-l~~~v~~g~fr~dL~~ 289 (368)
T 3dzd_A 211 LTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN-LEEEIKKGNFREDLYY 289 (368)
T ss_dssp CCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC-HHHHHHTTSSCHHHHH
T ss_pred ccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC-HHHHHHcCCccHHHHH
Confidence 135778888877777766666655321 11 23566666533 211110
Q ss_pred --cccEEEcCCCCH--HHHHHHHHH
Q 008394 98 --VRKIYEMEALEY--HHALELFSR 118 (567)
Q Consensus 98 --~~~~~~l~~L~~--~~~~~l~~~ 118 (567)
....+.++||.+ +|...|...
T Consensus 290 rl~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 290 RLSVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp HHTSEEEECCCGGGSTTHHHHHHHH
T ss_pred HhCCeEEeCCChhhchhhHHHHHHH
Confidence 113578999987 676666554
No 430
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.52 E-value=0.081 Score=53.03 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...+|.|+|.+|+||||++..+...++..-..+.+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 3579999999999999999999988765433333333
No 431
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.50 E-value=0.13 Score=49.99 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
....+++|+|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567999999999999999999987654
No 432
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.47 E-value=0.06 Score=47.07 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.....|+|+|.+|+|||||...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999988864
No 433
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.47 E-value=0.045 Score=48.77 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 434
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.42 E-value=0.1 Score=54.44 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
+..+.+.+..........+|.+.|++|+||||+|+.+.+.+..
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3344445544222233568999999999999999999987643
No 435
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.41 E-value=0.039 Score=48.44 Aligned_cols=21 Identities=38% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.38 E-value=0.054 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
....+|+|.|+.|+||||+++.+.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998765
No 437
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.37 E-value=0.066 Score=55.75 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=24.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..+|+|+|+.|+|||||++.+...+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 368999999999999999999988764
No 438
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.35 E-value=0.043 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+.|.|.|+.|+||||||.++.++
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999865
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.35 E-value=0.055 Score=49.97 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
...|+|.|+.|+||||+++.+.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998764
No 440
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.34 E-value=0.067 Score=48.09 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+++|+|+.|+|||||++.+.--
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999765
No 441
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.30 E-value=0.12 Score=51.40 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=32.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc------cCCceEEEEcCccccHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS------DFEGSCFLENVREESQDQEESLIE 72 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~l~~ 72 (567)
.++.|+|++|+|||||+..++-.... .-..++|++.-..........+..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~ 234 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 234 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence 59999999999999999988644321 223467776544333333333333
No 442
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.29 E-value=0.099 Score=49.95 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccCCCeEEEEEEc---CCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 6 SIVEEIESLLAVESKDVYCLGIWG---IGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~i~I~G---~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+.++++.+.+... .++|+|++ -||+||||+|..+...+...-..+..+|
T Consensus 21 ~~~~~~~r~~~~~---~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 21 KILEELRRILSNK---NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHHHH---CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhcCC---CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4556677766433 24677775 9999999999999987654333444454
No 443
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.28 E-value=0.089 Score=51.09 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+..+++.+.|-||+||||+|..+...+...-..+..++
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999999988765544555554
No 444
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.25 E-value=0.074 Score=49.21 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 25 LGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 25 i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
|+|.|-||+||||+|..+...+...-..++.+|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 666999999999999999988765434455554
No 445
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.20 E-value=0.11 Score=47.99 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=27.2
Q ss_pred CeEEEEEEc-CCCChHHHHHHHHHHHHhcc-CCceEEEE
Q 008394 21 DVYCLGIWG-IGGIGKTTIARAIFDKISSD-FEGSCFLE 57 (567)
Q Consensus 21 ~~~~i~I~G-~gGvGKTtLa~~~~~~~~~~-f~~~~~~~ 57 (567)
..++|+|++ -||+||||+|..+...+... =..++.+|
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 346777775 68999999999999988665 34444454
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.19 E-value=0.046 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=25.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. ....+.++++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEEC
Confidence 489999999999999999887432 2344566664
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.18 E-value=0.04 Score=50.25 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. ....+.++++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~ 64 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLE 64 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEEC
Confidence 489999999999999999887432 2334555554
No 448
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.17 E-value=0.11 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
..|+|.|+.|+||||+++.+.+.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999988754
No 449
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.16 E-value=0.084 Score=47.13 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.5
Q ss_pred EEEEEE-cCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIW-GIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~-G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
++|+|+ +-||+||||+|..+...+...-..+..+|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577777 67999999999999988765444455555
No 450
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.11 E-value=0.034 Score=61.09 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHhccc-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 008394 2 VGVESIVEEIESLLAVE-----------SKDVYCLGIWGIGGIGKTTIARAIFDKISSD 49 (567)
Q Consensus 2 vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~ 49 (567)
+|.++.+++|.+.+... -...+.+.++|++|+||||||+.++......
T Consensus 480 ~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 57777788888776421 0233568999999999999999999876433
No 451
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.09 E-value=0.16 Score=47.68 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcc--cCCCeEEEEEEcC-CCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 6 SIVEEIESLLAV--ESKDVYCLGIWGI-GGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 6 ~~~~~l~~~L~~--~~~~~~~i~I~G~-gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
+.+..|+.-|.. .+...++|.|+|. ||+||||+|..+...+.+.-..++.+|
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 344445544432 2345679999975 899999999999988765544555565
No 452
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.09 E-value=0.087 Score=53.46 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
-.++.|.|.+|+||||+|.+++..+...-..++|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 359999999999999999999887643323344443
No 453
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.09 E-value=0.064 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999753
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.05 E-value=0.039 Score=55.60 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
...+|.|+|++|+||||+|+++.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988654
No 455
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.05 E-value=0.052 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 456
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.04 E-value=0.071 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.-.|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.00 E-value=0.11 Score=48.59 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=25.7
Q ss_pred HHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHH
Q 008394 10 EIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 10 ~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
++.+.+.....+.-.|+|+|.+|+|||||...+..
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33334433334556799999999999999999875
No 458
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.99 E-value=0.16 Score=48.58 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=29.4
Q ss_pred CCeEEEEEEcC-CCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 20 KDVYCLGIWGI-GGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 20 ~~~~~i~I~G~-gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
...++|.|.|. ||+||||+|..++..+...-..++.+|
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45679999986 899999999999988765544455565
No 459
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.97 E-value=0.11 Score=48.00 Aligned_cols=35 Identities=29% Similarity=0.228 Sum_probs=26.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH-HhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK-ISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~-~~~~f~~~~~~~ 57 (567)
.++.|.|.+|+|||++|.+++.. ..+.-..+++++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 48999999999999999997654 444444555554
No 460
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.96 E-value=0.056 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS 47 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~ 47 (567)
.+|+|.|+.|+||||+|+.+.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998763
No 461
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.93 E-value=0.097 Score=53.41 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=26.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc-CCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSD-FEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~-f~~~~~~~ 57 (567)
.++.|.|.+|+||||+|..++..+... -..++|++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 499999999999999999999876432 22455554
No 462
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.92 E-value=0.12 Score=46.89 Aligned_cols=36 Identities=14% Similarity=-0.149 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEE
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFL 56 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~ 56 (567)
...++.|+|..|+||||++..+..+...+-..++.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 346999999999999999999988875544334444
No 463
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.87 E-value=0.054 Score=51.01 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||++.+.--+ ....+.++++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~ 68 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFD 68 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEEC
Confidence 489999999999999999887533 3345666664
No 464
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.87 E-value=0.054 Score=49.85 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=25.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||++.+..-.. ...+.++++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~ 65 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIK 65 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEEC
Confidence 4899999999999999999875432 223445443
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.86 E-value=0.057 Score=50.16 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=25.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH-hccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKI-SSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~-~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. .....+.++++
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 489999999999999999988531 12234555554
No 466
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.84 E-value=0.15 Score=52.01 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHHHhcccCCCeEEEEEEcCCCChHHHHHHHHHHHHhccCC
Q 008394 7 IVEEIESLLAVESKDVYCLGIWGIGGIGKTTIARAIFDKISSDFE 51 (567)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~ 51 (567)
.++.+...+.... +.+.|.|.+|.||||++..+...+.....
T Consensus 33 av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 33 AFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 3444444443322 38999999999999999999988754443
No 467
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.81 E-value=0.075 Score=48.34 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
.++|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998875
No 468
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.80 E-value=0.055 Score=50.06 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
-.+++|+|+.|+|||||.+.++--. ....+.++++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~ 62 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITID 62 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEEC
Confidence 3589999999999999999987543 2345666664
No 469
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.79 E-value=0.06 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 470
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.78 E-value=0.092 Score=50.91 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
..++...|-||+||||+|..+...+.+.-..+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467888899999999999999988765544444454
No 471
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.73 E-value=0.058 Score=50.48 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=25.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. ....+.++++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~ 66 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVN 66 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEEC
Confidence 489999999999999999887433 2334566654
No 472
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.73 E-value=0.062 Score=50.47 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh-ccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKIS-SDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~-~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.++--.. ....+.++++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4899999999999999999885421 2234566664
No 473
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.72 E-value=0.13 Score=50.46 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
+..+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4679999999999999999999876543
No 474
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.70 E-value=0.07 Score=48.17 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
+....|+|+|.+|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998864
No 475
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.70 E-value=0.1 Score=54.68 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
...+|.|.|++|+||||+|+.+.+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4468999999999999999999988653
No 476
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.67 E-value=0.053 Score=50.03 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=25.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.++--. ....+.++++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~ 66 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFN 66 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEC
Confidence 489999999999999999987533 2334566654
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.65 E-value=0.053 Score=49.64 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=25.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--.+ ...+.+.++
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 68 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHS 68 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-CCccEEEEC
Confidence 4899999999999999999875432 234555543
No 478
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.63 E-value=0.18 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
-.++.|+|.+|+||||+|.+++..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3699999999999999999998764
No 479
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.63 E-value=0.12 Score=52.99 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhccC
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISSDF 50 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~~f 50 (567)
..+|.++|++|+||||+|+++.+.....|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45899999999999999999998765444
No 480
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.62 E-value=0.047 Score=49.36 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=25.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.++--. ....+.++++
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~ 69 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYN 69 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEEC
Confidence 489999999999999999987543 2334566554
No 481
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.60 E-value=0.091 Score=47.66 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 21 DVYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 21 ~~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999988754
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.59 E-value=0.062 Score=50.39 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=26.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||++.+.--. ....+.++++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~ 71 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLL 71 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEEC
Confidence 489999999999999999987543 2345666664
No 483
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.59 E-value=0.056 Score=50.57 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=25.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. ....+.++++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~ 84 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIID 84 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEEC
Confidence 489999999999999999987443 2334566664
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.58 E-value=0.055 Score=50.51 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=25.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.++--.+ ...+.++++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 67 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFE 67 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence 4899999999999999999875432 334556554
No 485
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.57 E-value=0.1 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIF 43 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~ 43 (567)
.+++|+|+.|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 486
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.57 E-value=0.09 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
.-.|+|+|.+|+|||||+..+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 34699999999999999998864
No 487
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.57 E-value=0.069 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
..|+|+|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998753
No 488
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.56 E-value=0.073 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|+|+|.+|+|||||...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999764
No 489
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.55 E-value=0.069 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKI 46 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~ 46 (567)
-.+++|+|+.|+|||||++.+..-.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3599999999999999999998765
No 490
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.53 E-value=0.1 Score=45.22 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998764
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.53 E-value=0.069 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.-.|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999988753
No 492
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.51 E-value=0.14 Score=48.16 Aligned_cols=26 Identities=23% Similarity=0.518 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 008394 20 KDVYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 20 ~~~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.....|+++|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 44568999999999999999998753
No 493
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.48 E-value=0.073 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 494
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.45 E-value=0.073 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 008394 24 CLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 24 ~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998763
No 495
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.45 E-value=0.073 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDK 45 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~ 45 (567)
.-.|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999998754
No 496
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.44 E-value=0.067 Score=49.58 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=26.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.+.--. ....+.++++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~ 69 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLID 69 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEEC
Confidence 489999999999999999987543 2335666664
No 497
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.43 E-value=0.091 Score=45.01 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEEEcCCCChHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIF 43 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~ 43 (567)
-.|+|+|.+|+|||||+..+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.43 E-value=0.072 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 008394 23 YCLGIWGIGGIGKTTIARAIFD 44 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~ 44 (567)
..|+|+|.+|+|||||...+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.42 E-value=0.065 Score=48.84 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 008394 22 VYCLGIWGIGGIGKTTIARAIFDKISS 48 (567)
Q Consensus 22 ~~~i~I~G~gGvGKTtLa~~~~~~~~~ 48 (567)
...|+|.|+.|+||||+++.+.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999988754
No 500
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.41 E-value=0.061 Score=50.11 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=25.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccCCceEEEE
Q 008394 23 YCLGIWGIGGIGKTTIARAIFDKISSDFEGSCFLE 57 (567)
Q Consensus 23 ~~i~I~G~gGvGKTtLa~~~~~~~~~~f~~~~~~~ 57 (567)
.+++|+|+.|+|||||.+.++--. ....+.++++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~ 75 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVF 75 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEET
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEEC
Confidence 489999999999999999987432 2334566654
Done!