BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008397
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 178/254 (70%), Gaps = 4/254 (1%)
Query: 2 GFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFY 61
GFRGEALAS+++V HVT+TT T YR SY DG +++ PK CA +GTQI VE+LFY
Sbjct: 99 GFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFY 158
Query: 62 NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIR 121
N+ RRK L+N S++Y KI++++ R ++H+ +SFS +K G ADV ++ +S +D+IR
Sbjct: 159 NIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIR 218
Query: 122 TVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLK 181
+++G +V+ L+++ + + FKM+GY+SN+NY KK +LF+N RLVE L+
Sbjct: 219 SIFGNAVSRELIEIGC----EDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLR 274
Query: 182 RAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 241
+A+E VYAA PK + PF+Y+S+ + P++VDVNVHPTK EV L++E I+E++Q +E K
Sbjct: 275 KAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESK 334
Query: 242 LRQSNDSRTYKEQT 255
L SN SR Y QT
Sbjct: 335 LLGSNSSRMYFTQT 348
>pdb|3RBN|A Chain A, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1
[homo Sapiens]
pdb|3RBN|B Chain B, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1
[homo Sapiens]
Length = 284
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 134/227 (59%), Gaps = 17/227 (7%)
Query: 296 AGRLHAYVQ-SKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGL 354
+GR + Y Q S+ + A P +RR +N LTS+ L ++++ H L
Sbjct: 9 SGRENLYFQGSRKEXTAACTP----------RRRIIN----LTSVLSLQEEINEQGHEVL 54
Query: 355 LDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAP 414
+ + + SF+G + +AL QH T +YL N LS+EL YQ+++ FA+F ++LS+PAP
Sbjct: 55 REXLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAP 114
Query: 415 LSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRL 474
L +L LAL + +E D KE +AE E LK+KAE L +YF ++ID GNL L
Sbjct: 115 LFDLAXLALDSPESGW--TEEDGPKEGLAEYIVEFLKKKAEXLADYFSLEIDEEGNLIGL 172
Query: 475 PIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAM 521
P+++D Y P ++ +P F+L L +V+W++EK CF++++ FY++
Sbjct: 173 PLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAXFYSI 219
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 7/247 (2%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
+GFRGEALAS++ V +T+T+ T ++ M K A GT + V +LF
Sbjct: 98 LGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLF 157
Query: 61 YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
YN ARRK L+ ++ I +++ R+A+ +V+ + +G ++ + +
Sbjct: 158 YNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKE-- 215
Query: 121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV--AKKTTMVLFVNDRLVECA 178
R + + + L Q A E+ + G+V++ N+ A +VN R++
Sbjct: 216 RRLGAICGTAFLEQALAIEWQHGD---LTLRGWVADPNHTTPALAEIQYCYVNGRMMRDR 272
Query: 179 PLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238
+ A+ +P + + + P VDVNVHP K EV L+ + I V
Sbjct: 273 LINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGV 332
Query: 239 ELKLRQS 245
L+Q
Sbjct: 333 LSVLQQQ 339
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 7/246 (2%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
+GFRGEALAS++ V +T+T+ T ++ M K A GT + V +LF
Sbjct: 95 LGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLF 154
Query: 61 YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
YN ARRK L+ ++ I +++ R+A+ +V+ + +G ++ + +
Sbjct: 155 YNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKE-- 212
Query: 121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV--AKKTTMVLFVNDRLVECA 178
R + + + L Q A E+ + G+V++ N+ A +VN R++
Sbjct: 213 RRLGAICGTAFLEQALAIEWQHGD---LTLRGWVADPNHTTPALAEIQYCYVNGRMMRDR 269
Query: 179 PLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238
+ A+ +P + + + P VDVNVHP K EV L+ + I V
Sbjct: 270 LINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGV 329
Query: 239 ELKLRQ 244
L+Q
Sbjct: 330 LSVLQQ 335
>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 288
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 325 RQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDV--YALLQHNTHMYL 382
++R N+N LTSI++L + VD + H L DI + +++G+ D+ A +QH+ ++L
Sbjct: 23 KERVNVN----LTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFL 78
Query: 383 ANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKI 442
+ S+ EL YQ+ L FA+F I L ++++ L E + +D KEKI
Sbjct: 79 IDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNLLSE---FDELNDDASKEKI 135
Query: 443 AEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQ--------YTPDMDRIPEFVLC 494
++ + ML EY+ +++ G + L + + Y P + ++P F+
Sbjct: 136 ISKIWDM----SSMLNEYYSIELVNDGLDNDLKSVKLKSLPLLLKGYIPSLVKLPFFIYR 191
Query: 495 LGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLP 527
LG +VDWEDE+ C I + Y P ++P
Sbjct: 192 LGKEVDWEDEQECLDGILREIALLYI--PDMVP 222
>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 285
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 325 RQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDV--YALLQHNTHMYL 382
++R N+N LTSI++L + VD + H L DI + +++G+ D+ A +QH+ ++L
Sbjct: 20 KERVNVN----LTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFL 75
Query: 383 ANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKI 442
+ S+ EL YQ+ L FA+F I L ++++ L E + +D KEKI
Sbjct: 76 IDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNLLSE---FDELNDDASKEKI 132
Query: 443 AEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQ--------YTPDMDRIPEFVLC 494
++ + ML EY+ +++ G + L + + Y P + ++P F+
Sbjct: 133 ISKIWDM----SSMLNEYYSIELVNDGLDNDLKSVKLKSLPLLLKGYIPSLVKLPFFIYR 188
Query: 495 LGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLP 527
LG +VDWEDE+ C I + Y P ++P
Sbjct: 189 LGKEVDWEDEQECLDGILREIALLYI--PDMVP 219
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 7/240 (2%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
+GFRGEALAS++ V +T+T+ T ++ M K A GT + V +LF
Sbjct: 94 LGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLF 153
Query: 61 YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
YN ARRK L+ ++ I +++ R+A+ +V+ + +G ++ + +
Sbjct: 154 YNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKE-- 211
Query: 121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV--AKKTTMVLFVNDRLVECA 178
R + + + L Q A E+ + G+V++ N+ A +VN R++
Sbjct: 212 RRLGAICGTAFLEQALAIEWQHGD---LTLRGWVADPNHTTPALAEIQYCYVNGRMMRDR 268
Query: 179 PLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238
+ A+ +P + + + P VDVNVHP K EV L+ + I V
Sbjct: 269 LINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGV 328
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 7/240 (2%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
+GFRGEAL S++ V +T+T+ T ++ M K A GT + V +LF
Sbjct: 94 LGFRGEALPSISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLF 153
Query: 61 YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
YN ARRK L+ ++ I +++ R+A+ +V+ + +G ++ + +
Sbjct: 154 YNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKE-- 211
Query: 121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV--AKKTTMVLFVNDRLVECA 178
R + + + L Q A E+ + G+V++ N+ A +VN R++
Sbjct: 212 RRLGAICGTAFLEQALAIEWQHGD---LTLRGWVADPNHTTPALAEIQYCYVNGRMMRDR 268
Query: 179 PLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238
+ A+ +P + + + P VDVNVHP K EV L+ + I V
Sbjct: 269 LINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGV 328
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 24/259 (9%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSY--RDGVMESEPKACAAVKGTQIMVEN 58
GFRGEAL+S+ + VT++T G R+ + +++ P +GT + V+
Sbjct: 104 FGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYP--RPRGTTVSVQQ 161
Query: 59 LFYNMIARRKTLQ-NSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATS 114
LF + R K Q N +Y K+V +L I + SC G + V + +
Sbjct: 162 LFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSP 221
Query: 115 SRLDSIRTVYGVSVASNL---VQLEAS-----EYNDSSS----FVFKMDGYVSNSNY-VA 161
S ++I +V+G +L VQL S EY S S +F + G++S + V
Sbjct: 222 SIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVG 281
Query: 162 KKTT--MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTK 219
+ +T F+N R + A + R V VY + + PF+ ++I + E VD+NV P K
Sbjct: 282 RSSTDRQFFFINRRPCDPAKVCRLVNEVYH-MYNRHQYPFVVLNISVDSECVDINVTPDK 340
Query: 220 REVSLLNQELIVEKIQSAV 238
R++ L ++L++ +++++
Sbjct: 341 RQILLQEEKLLLAVLKTSL 359
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 24/259 (9%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSY--RDGVMESEPKACAAVKGTQIMVEN 58
GFRGEAL+S+ + VT++T G R+ + +++ P +GT + V+
Sbjct: 104 FGFRGEALSSLCALSDVTISTCHASAKVGTRLXFDHNGKIIQKTPYP--RPRGTTVSVQQ 161
Query: 59 LFYNMIARRKTLQ-NSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATS 114
LF + R K Q N +Y K V +L I + SC G + V + +
Sbjct: 162 LFSTLPVRHKEFQRNIKKEYAKXVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSP 221
Query: 115 SRLDSIRTVYGVSVASNL---VQLEAS-----EYNDSSS----FVFKMDGYVSNSNY-VA 161
S ++I +V+G +L VQL S EY S S +F + G++S + V
Sbjct: 222 SIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVG 281
Query: 162 KKTT--MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTK 219
+ +T F+N R + A + R V VY + + PF+ ++I + E VD+NV P K
Sbjct: 282 RSSTDRQFFFINRRPCDPAKVCRLVNEVYHX-YNRHQYPFVVLNISVDSECVDINVTPDK 340
Query: 220 REVSLLNQELIVEKIQSAV 238
R++ L ++L++ +++++
Sbjct: 341 RQILLQEEKLLLAVLKTSL 359
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 24/259 (9%)
Query: 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSY--RDGVMESEPKACAAVKGTQIMVEN 58
GFRGEAL+S+ + VT++T G R+ + +++ P +GT + V+
Sbjct: 104 FGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYP--RPRGTTVSVQQ 161
Query: 59 LFYNMIARRKTLQ-NSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATS 114
LF + R K Q N +Y K+V +L I + SC G + V + +
Sbjct: 162 LFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSP 221
Query: 115 SRLDSIRTVYGVSVASNL---VQLEAS-----EYNDSSS----FVFKMDGYVSNSNY-VA 161
S ++I +V+G +L VQL S EY S S +F + G++S + V
Sbjct: 222 SIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVG 281
Query: 162 KKTT--MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTK 219
+ +T F+N R + A + R V VY + + PF+ ++I + E VD+NV P K
Sbjct: 282 RSSTDRQFFFINRRPCDPAKVCRLVNEVYH-MYNRHQYPFVVLNISVDSECVDINVTPDK 340
Query: 220 REVSLLNQELIVEKIQSAV 238
R++ L ++L++ +++++
Sbjct: 341 RQILLQEEKLLLAVLKTSL 359
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 50/274 (18%)
Query: 1 MGFRGEALASMTYVGHVTVTTITK------------GHLHGYRVSYRDGVMESEPKACAA 48
+GFRGEAL+S+ + ++V T T GH+ + R+
Sbjct: 95 LGFRGEALSSLCGIAKLSVITTTSPPKADKLEYDMVGHITSKTTTSRN------------ 142
Query: 49 VKGTQIMVENLFYNMIARRKTLQNS-SDDYTKIVDLLSRMAIHHTNVSFSCRK---HGAA 104
KGT ++V LF+N+ R+K + +TK + ++ AI + + FS G
Sbjct: 143 -KGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKK 201
Query: 105 RADVHSIATSSRLDSIRTVYGVSVASNLVQLEA------------SEYNDSSSFV----- 147
+ ++ SS +I +V+G L +++ +Y D F+
Sbjct: 202 NLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYK 261
Query: 148 FKMDGYVSNSNYVAKKTT---MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSI 204
++ GY+S +++ + + ++VN R VE + L + VY TF P +++++
Sbjct: 262 IRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYK-TFNNVQFPAVFLNL 320
Query: 205 VLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238
LP +DVNV P KR + L N+ +++ ++ +
Sbjct: 321 ELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTL 354
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 299 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 358
+ +YVQ P +V AV S +Q + N A+L I+ ++ + N HS I+
Sbjct: 569 MDSYVQI-PDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRIS-NKHSFATKII 626
Query: 359 RHCSFIGMADDVYALLQHNTHM 380
R DD YA+LQ NT +
Sbjct: 627 RVD-----GDDNYAVLQFNTEV 643
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 299 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 358
+ +YVQ P +V AV S +Q + N A+L I+ ++ + N HS I+
Sbjct: 569 MDSYVQI-PDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRIS-NKHSFATKII 626
Query: 359 RHCSFIGMADDVYALLQHNTHM 380
R DD YA+LQ NT +
Sbjct: 627 RVD-----GDDNYAVLQFNTEV 643
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 299 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 358
+ +YVQ P +V AV S +Q + N A+L I+ ++ + N HS I+
Sbjct: 575 MDSYVQI-PDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRIS-NKHSFATKII 632
Query: 359 RHCSFIGMADDVYALLQHNTHM 380
R DD YA+LQ NT +
Sbjct: 633 RVD-----GDDNYAVLQFNTEV 649
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,879,678
Number of Sequences: 62578
Number of extensions: 625419
Number of successful extensions: 1619
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1591
Number of HSP's gapped (non-prelim): 18
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)