Query 008397
Match_columns 567
No_of_seqs 253 out of 1301
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 23:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1979 DNA mismatch repair pr 100.0 5E-119 1E-123 943.7 37.5 527 1-535 97-645 (694)
2 COG0323 MutL DNA mismatch repa 100.0 2E-73 4.4E-78 636.5 43.0 477 1-521 93-589 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 6E-66 1.3E-70 578.4 42.1 472 1-523 92-570 (617)
4 TIGR00585 mutl DNA mismatch re 100.0 2.5E-46 5.4E-51 389.1 22.7 216 1-223 92-312 (312)
5 KOG1978 DNA mismatch repair pr 100.0 5E-42 1.1E-46 370.9 28.0 448 1-498 90-606 (672)
6 cd03483 MutL_Trans_MLH1 MutL_T 100.0 5.6E-30 1.2E-34 232.3 13.9 127 115-243 1-127 (127)
7 PF01119 DNA_mis_repair: DNA m 100.0 4.9E-29 1.1E-33 223.7 13.5 118 120-243 1-119 (119)
8 cd03482 MutL_Trans_MutL MutL_T 100.0 9.1E-29 2E-33 223.2 13.9 121 117-243 2-123 (123)
9 cd03485 MutL_Trans_hPMS_1_like 100.0 1.1E-27 2.4E-32 218.8 14.4 124 115-242 1-131 (132)
10 cd03486 MutL_Trans_MLH3 MutL_T 99.9 1.2E-27 2.6E-32 221.0 13.8 122 115-243 1-141 (141)
11 KOG1977 DNA mismatch repair pr 99.9 3.7E-28 7.9E-33 260.5 9.4 217 1-244 90-310 (1142)
12 cd00782 MutL_Trans MutL_Trans: 99.9 1E-26 2.3E-31 209.3 13.7 120 117-242 2-122 (122)
13 cd03484 MutL_Trans_hPMS_2_like 99.9 4.7E-26 1E-30 210.5 14.6 127 115-242 1-141 (142)
14 PRK14867 DNA topoisomerase VI 99.8 1.6E-19 3.5E-24 200.6 18.0 182 1-210 109-308 (659)
15 cd00329 TopoII_MutL_Trans MutL 99.7 6.4E-18 1.4E-22 147.2 10.2 101 117-223 2-107 (107)
16 PF08676 MutL_C: MutL C termin 99.7 4.9E-18 1.1E-22 157.2 8.3 131 361-521 3-138 (144)
17 smart00853 MutL_C MutL C termi 99.7 5.6E-16 1.2E-20 141.8 11.4 110 361-497 2-118 (136)
18 PRK14868 DNA topoisomerase VI 99.5 1.9E-14 4E-19 160.8 8.3 137 1-160 118-272 (795)
19 smart00433 TOP2c Topoisomerase 99.4 5.4E-12 1.2E-16 141.9 18.1 202 1-221 79-304 (594)
20 PRK05644 gyrB DNA gyrase subun 99.2 5.7E-10 1.2E-14 126.3 20.1 200 1-222 115-343 (638)
21 TIGR01059 gyrB DNA gyrase, B s 99.2 6.6E-10 1.4E-14 126.5 20.6 221 1-243 108-358 (654)
22 PRK05218 heat shock protein 90 99.1 9.3E-10 2E-14 124.3 16.0 202 2-242 120-345 (613)
23 TIGR01055 parE_Gneg DNA topois 99.1 2E-09 4.4E-14 121.5 17.1 200 1-221 108-335 (625)
24 TIGR01052 top6b DNA topoisomer 99.1 3.6E-10 7.7E-15 123.1 9.2 91 1-102 101-205 (488)
25 PRK05559 DNA topoisomerase IV 99.0 6.8E-09 1.5E-13 117.6 17.2 198 1-221 115-340 (631)
26 PRK14939 gyrB DNA gyrase subun 98.8 8.7E-08 1.9E-12 109.7 15.4 193 1-212 115-334 (756)
27 PRK04184 DNA topoisomerase VI 98.4 1.2E-06 2.6E-11 96.8 11.1 91 1-102 111-214 (535)
28 TIGR01058 parE_Gpos DNA topois 93.0 1 2.2E-05 51.8 12.6 187 2-207 113-326 (637)
29 COG1389 DNA topoisomerase VI, 84.6 3.6 7.7E-05 44.9 8.0 88 2-100 115-212 (538)
30 COG0326 HtpG Molecular chapero 82.0 14 0.0003 42.2 11.7 203 5-243 123-354 (623)
31 KOG1977 DNA mismatch repair pr 66.5 3.4 7.5E-05 47.1 2.0 81 358-466 910-990 (1142)
32 PTZ00109 DNA gyrase subunit b; 60.4 15 0.00033 43.7 5.8 95 2-101 248-357 (903)
33 PF13589 HATPase_c_3: Histidin 52.4 13 0.00028 33.8 3.0 35 1-35 70-106 (137)
34 PRK14083 HSP90 family protein; 48.3 88 0.0019 36.0 9.3 206 2-242 105-325 (601)
35 COG0187 GyrB Type IIA topoisom 48.1 38 0.00083 38.7 6.2 178 13-209 126-331 (635)
36 PHA02569 39 DNA topoisomerase 39.9 65 0.0014 37.1 6.6 89 5-101 131-223 (602)
37 PTZ00130 heat shock protein 90 38.8 57 0.0012 38.7 6.0 79 5-96 184-270 (814)
38 PLN03128 DNA topoisomerase 2; 38.5 7.5E+02 0.016 30.9 15.5 176 14-212 145-346 (1135)
39 PRK13669 hypothetical protein; 37.3 30 0.00066 28.7 2.5 44 146-191 29-72 (78)
40 PTZ00272 heat shock protein 83 33.7 50 0.0011 38.6 4.5 70 9-91 124-199 (701)
41 PLN03237 DNA topoisomerase 2; 32.9 1E+03 0.022 30.6 15.4 81 13-101 169-259 (1465)
42 PTZ00108 DNA topoisomerase 2-l 32.7 1E+02 0.0022 38.9 7.1 81 13-100 152-240 (1388)
43 KOG0019 Molecular chaperone (H 32.2 65 0.0014 36.7 4.8 77 2-89 148-226 (656)
44 PF07293 DUF1450: Protein of u 30.6 43 0.00094 27.8 2.4 44 146-191 29-72 (78)
45 PF15368 BioT2: Spermatogenesi 27.0 2.1E+02 0.0045 27.0 6.4 99 403-511 47-157 (170)
46 PF14122 YokU: YokU-like prote 23.5 33 0.00071 29.0 0.5 25 376-400 54-78 (87)
No 1
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=5e-119 Score=943.69 Aligned_cols=527 Identities=46% Similarity=0.743 Sum_probs=470.1
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI 80 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I 80 (567)
|||||||||||||||||+|+||++++.|||++.|.||+|.+.|+||||++||+|+|+|||||+|+|||+|++.++|+.+|
T Consensus 97 yGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE~~ki 176 (694)
T KOG1979|consen 97 YGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRRKALRNHAEEYRKI 176 (694)
T ss_pred cCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHHHHhcCcHHHHHHH
Confidence 89999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccc-ccc-ccccCCCCCcceEEEEEEeCCC
Q 008397 81 VDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSSFVFKMDGYVSNSN 158 (567)
Q Consensus 81 ~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~-~v~-~~~~~~~~~~~~~v~G~is~~~ 158 (567)
.++|++||+|+|+|+|+|++.|+....++|.+..+..|.|+.+||..++++|+ ++. +.+ .. ..|+++||||+++
T Consensus 177 ~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~--~~--l~f~~~g~Isn~n 252 (694)
T KOG1979|consen 177 MDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDS--KL--LKFSAEGYISNAN 252 (694)
T ss_pred HHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccC--ce--eEEeccceEechh
Confidence 99999999999999999999999899999999999999999999999999999 776 443 33 6789999999999
Q ss_pred CCCCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHH
Q 008397 159 YVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238 (567)
Q Consensus 159 ~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i 238 (567)
++.++....+|||||+|+|..|+++|+.+|+.+||++.+||+||+|.++|++|||||||||+||+|+++++|++.|++.+
T Consensus 253 ~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL~qEeIie~I~~~i 332 (694)
T KOG1979|consen 253 YSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFLNQEEIIERICQQI 332 (694)
T ss_pred hhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccccccCCCCCCCCCCC--CCCCCCCCCccccCCCCcceecCCCCCCccccccccCCCC-C-CCCC-
Q 008397 239 ELKLRQSNDSRTYKEQTVESSPSSPYNPSK--DLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPH-T-SVAS- 313 (567)
Q Consensus 239 ~~~L~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~~~~~~~~~-~-~~~~- 313 (567)
...|.+.+.+|+|..|.+.|.......+.+ +...++..++++|.+++++||||++ +++|++|+..... . +..+
T Consensus 333 e~~L~~~d~er~~~~q~~iP~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDss--e~ki~~fl~~~~~~~~s~~~~ 410 (694)
T KOG1979|consen 333 EERLSALDTERTFLKQVMIPGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSS--ERKIDSFLSPLTQVGSSNSTG 410 (694)
T ss_pred HHHHhccCcccchhhhhcccCCccccccccCccccccccccccchhcccceeecccc--ccchhhhhCCccccCcccccc
Confidence 999999999999999998887653322211 1122445667778999999999999 9999999954321 0 0000
Q ss_pred ----CCCccc-------cc-hhhh---hhcccccccccccHHHHHHHhhhhcCCcccccccccEEEEEEcCcEEEEEECC
Q 008397 314 ----GPNLSA-------VR-SSVR---QRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNT 378 (567)
Q Consensus 314 ----~~~~~~-------~~-~~~~---~~~~~~~~~~l~Sv~~l~~~i~~~~~~~l~~~~~~~~~VGqvd~~yiLiQ~~~ 378 (567)
....++ ++ +.+. ..+++++.++|+||+.|+.+|..+.|..++++|++++|||++|..++|+||++
T Consensus 411 nes~~~~~s~~~~e~s~~p~dd~r~~~~~~~~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yVG~vd~~~alvQh~t 490 (694)
T KOG1979|consen 411 NESEQGDDSSLSNENSRLPEDDVRFEYTAKTPRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYVGVVDERTALVQHGT 490 (694)
T ss_pred cccccccccccccccccCccchhhhhhccccchhccchhhHHHHHHHHHhhccHHHHHHHHhcceeeeechhhhhhhcCc
Confidence 000000 00 0111 11334434999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHHHHHHHHHhcccCeEecCCCcchhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHh
Q 008397 379 HMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLE 458 (567)
Q Consensus 379 ~LyLiDqhaa~eri~Yq~~l~~f~n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~ 458 (567)
+||+||+..+++|+|||+++.+||||+.++|++|.++.+|++++++.+ +++|.++|++++.+++.+++.|.++++||.
T Consensus 491 ~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l~~p~~l~el~~l~l~~e--~~~~~~~d~~ke~~~~~~~e~l~~ka~ml~ 568 (694)
T KOG1979|consen 491 SLYLCDTVSLSKELFYQILITDFGNFGKIRLSEPLPLSELLMLALESE--EPGWTADDGFKEKIARFAAEKLLEKADMLH 568 (694)
T ss_pred eEEEechHHHHHHHHHHHHHHHhcccceeecCCCccHHHHHHHhccCc--cCCCCccchhHHHHHHHHHHHHhhhHHHHh
Confidence 999999999999999999999999999999999999999999998765 579999999999999999999999999999
Q ss_pred hhcceEEecCCCccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhcccCCCCCCCCCCCCcce
Q 008397 459 EYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQ 535 (567)
Q Consensus 459 eyFgi~Ie~~G~L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~~i~r~lA~fys~~~~~~~~~~~~~~~ 535 (567)
|||||+|+++|.|.+||+|+.+|.|++++||.|++||+++|||++|++||++|||++|.||+..+...+-...+|..
T Consensus 569 dYFsi~i~e~g~l~~lP~L~~~y~P~le~lP~fi~rL~~~vdwedEk~cf~~i~r~ia~fY~~~t~~~~ls~~e~a~ 645 (694)
T KOG1979|consen 569 DYFSIEIDEEGLLTGLPSLLHQYIPPLEKLPFFILRLGKEVDWEDEKECFEGICRAIATFYTLDTSSAQLSEVEGAT 645 (694)
T ss_pred hheEEEEccCCceecCchhhcccCCChhhCcHHHHhhccccchHHHHHHHHHHHHHHHHHhccCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999997655444433444443
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-73 Score=636.46 Aligned_cols=477 Identities=24% Similarity=0.346 Sum_probs=351.1
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI 80 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I 80 (567)
||||||||||||+||+|+|+||+++...||++.++||.+....+|++.+.||||+|+|||||+|+|||+||+.++|+.+|
T Consensus 93 lGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrKflks~~~E~~~i 172 (638)
T COG0323 93 LGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHI 172 (638)
T ss_pred cCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHHhhcccHHHHHHH
Confidence 79999999999999999999999999999999999998864578999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEEEECCee-eeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCC
Q 008397 81 VDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY 159 (567)
Q Consensus 81 ~~~v~~yAl~~p~V~F~l~~~~~~-~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~ 159 (567)
.++|++|||+||+|+|+|+++|+. .....+++.++..++++.|||..+++++++++... .++++.||++.|.+
T Consensus 173 ~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~------~~~~l~G~v~~P~~ 246 (638)
T COG0323 173 TELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEH------EDLRLSGYVSLPEF 246 (638)
T ss_pred HHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCC------CceEEEEEeccccc
Confidence 999999999999999999999952 26677778888888999999999999999998887 88999999999976
Q ss_pred CC-CCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHH
Q 008397 160 VA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238 (567)
Q Consensus 160 ~~-~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i 238 (567)
++ ++..||+|||||+|.++.|.+||.++|+.++|.++||+|||+|+|+|..|||||||+|+||+|++++.|.+.|+++|
T Consensus 247 ~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~~~~i~~~I~~~I 326 (638)
T COG0323 247 TRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDERLVHDLIYEAI 326 (638)
T ss_pred ccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecCHHHHHHHHHHHH
Confidence 64 47899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccccc-ccccCCCCCCCCCCCCCCCCC--------CCCccccCCCCc--ceecCCCCCCccccccccCCC
Q 008397 239 ELKLRQSNDSRTYKE-QTVESSPSSPYNPSKDLHLNP--------SGSKLQKVPVNK--MVRTDSSDPAGRLHAYVQSKP 307 (567)
Q Consensus 239 ~~~L~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~vr~d~~~~~~~l~~~~~~~~ 307 (567)
.++|......+.-.. ++ +...............+ .........+.. ..+.....+.....+......
T Consensus 327 ~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (638)
T COG0323 327 KEALAQQGLIPPASVEAP--KSASQPLPAFQEPSPLPESRIQKSKVAKSGSSKSDAPSIAEPASGASPSPASPSIRPLSK 404 (638)
T ss_pred HHHHHhcccCCccccccc--ccccccccccccCcccccccccccccccccCCcccccccccccccCCccccccccccccc
Confidence 999988765432100 00 00000000000000000 000000000000 000000000000000000000
Q ss_pred CCCCCCCCCccccchhhhhhcccccccccccHHHHH--HHhhhhcCCcccccccccEEEEEEcCcEEEEEECCeEEEEec
Q 008397 308 HTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELI--DDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANV 385 (567)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Sv~~l~--~~i~~~~~~~l~~~~~~~~~VGqvd~~yiLiQ~~~~LyLiDq 385 (567)
.-.+.. .....+. ..... .....++..... .+....... .+.++.+.++||++++|||+|++++||||||
T Consensus 405 -~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~i~q~~~~yil~e~~~~L~lvDq 476 (638)
T COG0323 405 -NILPES-SPGSLKN--EDRSY--DDLLEEPAESEDKQEEAEQKAIS--EDVFPLGEAIGQVHGTYILAEHEDGLVLVDQ 476 (638)
T ss_pred -cccccc-cccccch--hcccc--cccccccchhccccccccccccc--ccccccceEEEEecceEEEEEeCCCEEEEEh
Confidence 000000 0000000 00000 000000000000 000000011 1567889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhccc-CeEecCCCcchhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceE
Q 008397 386 VSLSKELMYQLVLRRFAHF-NAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVK 464 (567)
Q Consensus 386 haa~eri~Yq~~l~~f~n~-~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~ 464 (567)
||||||++||.+...+++. ..|.|..|..+. +.. .+...+.++.+.|.+ +||+
T Consensus 477 haa~Eri~ye~l~~~~~~~~~~Q~LliP~~~~------l~~-------------------~e~~~~~~~~~~l~~-~G~~ 530 (638)
T COG0323 477 HAAHERILYEKLKNELGNVGELQPLLIPIRLE------LSP-------------------EEADVLEEHKEELEK-LGFE 530 (638)
T ss_pred HHhHHHHHHHHHHHHhcccccccccccCeeee------cCH-------------------HHHHHHHHHHHHHHh-cCEE
Confidence 9999999999999999887 678899998887 422 278889999999999 8999
Q ss_pred EecCCC----ccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhcccC
Q 008397 465 IDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAM 521 (567)
Q Consensus 465 Ie~~G~----L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~~i~r~lA~fys~ 521 (567)
|+.+|. |+++|.+|...... ..+.+++-.+.+ ..-..-+.-.+.++..+||..++
T Consensus 531 i~~~g~~~~~v~~vP~~l~~~~~~-~~i~~l~~~~~~-~~~~~~~~~~~~~~a~~aC~~sv 589 (638)
T COG0323 531 IESFGENSVAVRSVPAMLGKAEVQ-ELIRELLDDLLE-GKLKDLKELLEELAATMACRSAV 589 (638)
T ss_pred EEEcCCceEEEEecChhhcccchH-HHHHHHHHHhhc-ccccchhHHHHHHHHHHHHHHhh
Confidence 998886 99999999997766 677777777765 44444455678888888888865
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=6e-66 Score=578.36 Aligned_cols=472 Identities=23% Similarity=0.339 Sum_probs=338.7
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI 80 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I 80 (567)
||||||||||||+||+|+|+||+.++..||++.|.+|++. ...+++++.||+|+|+|||||+|+|||++++.+.|+.+|
T Consensus 92 ~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i 170 (617)
T PRK00095 92 LGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV-EVKPAAHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHI 170 (617)
T ss_pred CCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc-ceecccCCCCCEEEechhhccCcHHHHhccCcHHHHHHH
Confidence 7999999999999999999999999999999999999887 577888899999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCC
Q 008397 81 VDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV 160 (567)
Q Consensus 81 ~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~ 160 (567)
.++|++||++||+|+|+|.+++ +..+++.+++++.+++..+||..+..+|++++.+. .+++++||++.|.++
T Consensus 171 ~~~v~~~Al~~p~i~f~l~~~~--~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~------~~~~i~g~is~p~~~ 242 (617)
T PRK00095 171 DDVVNRLALAHPDVAFTLTHNG--KLVLQTRGAGQLLQRLAAILGREFAENALPIDAEH------GDLRLSGYVGLPTLS 242 (617)
T ss_pred HHHHHHHhhcCCCcEEEEEECC--EEEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccC------CCEEEEEEEeCcccc
Confidence 9999999999999999999988 66789999999999999999999999999998876 789999999998765
Q ss_pred C-CCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHH
Q 008397 161 A-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVE 239 (567)
Q Consensus 161 ~-~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~ 239 (567)
. ++..||+|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.|||||||+|+||+|.+|+.|.+.|+++|.
T Consensus 243 ~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~~i~~~i~~~i~ 322 (617)
T PRK00095 243 RANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLVHDLIVQAIQ 322 (617)
T ss_pred cCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHHHHHHHHHHHHH
Confidence 4 478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccCCCCcceecCCCCCCccccccccCCCCCCCCCCCCccc
Q 008397 240 LKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSA 319 (567)
Q Consensus 240 ~~L~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (567)
++|...+......... ................ .........+......... ..... .+..... ...+.......
T Consensus 323 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~ 396 (617)
T PRK00095 323 EALAQSGLIPAAAGAN--QVLEPAEPEPLPLQQT-PLYASGSSPPASSPSSAPP-EQSEE-SQEESSA-EKNPLQPNASQ 396 (617)
T ss_pred HHHhccCCCccccccc--cccccccccccccccc-ccCcccccccccccccccc-ccccc-ccccccc-ccccccccccc
Confidence 9997643221110000 0000000000000000 0000000000000000000 00000 0000000 00000000000
Q ss_pred cchhhhhhcccccccccccHHHHHHHhhhhcCCcccccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHH
Q 008397 320 VRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLR 399 (567)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~Sv~~l~~~i~~~~~~~l~~~~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~ 399 (567)
... . ................ .+... ....+.++.+.+|||++++|||+|++++||||||||||||++||+++.
T Consensus 397 ~~~-~--~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~vigQv~~~YIl~e~~~~L~iIDQHAAhERI~yE~l~~ 469 (617)
T PRK00095 397 SEA-A--AAASAEAAAAAPAAAP-EPAEA---AEEADSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKD 469 (617)
T ss_pred ccc-c--cccccccccccccccc-ccccc---ccccccCcCceEeEEEcCEEEEEEeCCcEEEEEHHHHHHHHHHHHHHH
Confidence 000 0 0000000000000000 00000 001234456789999999999999999999999999999999999999
Q ss_pred Hhcc--cCeEecCCCcchhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEecCCC----ccc
Q 008397 400 RFAH--FNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSR 473 (567)
Q Consensus 400 ~f~n--~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~----L~s 473 (567)
++.+ ..+|.|+.|+.++ +.. .+.+++.++.+.|.+ +||+++.+|. |++
T Consensus 470 ~~~~~~~~~Q~LL~P~~l~------Ls~-------------------~e~~~l~~~~~~L~~-lGf~~e~fg~~si~I~~ 523 (617)
T PRK00095 470 KLAEVGLASQPLLIPLVLE------LSE-------------------DEADRLEEHKELLAR-LGLELEPFGPNSFAVRE 523 (617)
T ss_pred HhccCCCcccccccCeEEe------eCH-------------------HHHHHHHHHHHHHHh-CCcEEEEcCCCEEEEEe
Confidence 9854 6789999999988 432 278899999999999 7999999876 999
Q ss_pred cCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhcccCCC
Q 008397 474 LPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHP 523 (567)
Q Consensus 474 iP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~~i~r~lA~fys~~~ 523 (567)
+|.++..-.+. +.|.+++..|...-.-. ..+-. .++..+||-.|+..
T Consensus 524 vP~~l~~~~~~-~~l~ell~~l~~~~~~~-~~~~~-~~las~ACr~AIk~ 570 (617)
T PRK00095 524 VPALLGQQELE-ELIRDLLDELAEEGDSD-TLKER-ELLATMACHGAIRA 570 (617)
T ss_pred cChhhcccCHH-HHHHHHHHHHHhcCCcc-hHHHH-HHHHHHHHHHhhhc
Confidence 99998876554 66777776665421111 11212 67788888876543
No 4
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-46 Score=389.07 Aligned_cols=216 Identities=37% Similarity=0.569 Sum_probs=195.6
Q ss_pred CCCcchhHHHHhhhcceEEEeec-CCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTIT-KGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTK 79 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~-~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~ 79 (567)
||||||||+||+++|+|+|+||+ +++.++|++... |....+..+++.+.||||+|+|||||+|+||+++++.+.|+.+
T Consensus 92 ~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~ 170 (312)
T TIGR00585 92 LGFRGEALASISSVSRLTITTKTSAADGLAWQALLE-GGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRK 170 (312)
T ss_pred cCccchHHHHHHhhCcEEEEEeecCCCcceEEEEEC-CCcCcccccccCCCccEEEEchhhccCchhhhhccCcHHHHHH
Confidence 69999999999999999999999 889999999854 4443356778889999999999999999999999989999999
Q ss_pred HHHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHH-HHHHHhChhhhhcccccc-ccccCCCCCcceEEEEEEeCC
Q 008397 80 IVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD-SIRTVYGVSVASNLVQLE-ASEYNDSSSFVFKMDGYVSNS 157 (567)
Q Consensus 80 I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~-~i~~i~G~~~~~~l~~v~-~~~~~~~~~~~~~v~G~is~~ 157 (567)
|++++++||++||+|+|.|..+|+....+.+.+..++.+ ++.++||..++++|+++. ... .+++++||++.|
T Consensus 171 i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~------~~~~v~G~is~p 244 (312)
T TIGR00585 171 ILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWED------GDLQLEGFISEP 244 (312)
T ss_pred HHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccC------CCEEEEEEEcCc
Confidence 999999999999999999999986555555556788999 699999999999999998 444 689999999999
Q ss_pred CCCCC-Cce-EEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEe
Q 008397 158 NYVAK-KTT-MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVS 223 (567)
Q Consensus 158 ~~~~~-k~~-q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~ 223 (567)
...++ +.. ||+|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.+||||||+|+||+
T Consensus 245 ~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 245 NVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred ccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhccCCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 87654 445 9999999999999999999999999999999999999999999999999999999985
No 5
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=5e-42 Score=370.91 Aligned_cols=448 Identities=20% Similarity=0.277 Sum_probs=294.2
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEe-CCeeccccccccCCCCcEEEEcccccccHHHHHhhc-CchHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ-NSSDDYT 78 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~-~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lk-s~~~e~~ 78 (567)
||||||||+|+|++|.|+|+||+++++.|.++.|+ +|.+. ..++++.+.||||+|++||.|+|||||.+. +.++|+.
T Consensus 90 ~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~~ar~~GTTV~v~~LF~tLPVR~kef~r~~Kref~ 168 (672)
T KOG1978|consen 90 LGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKPVARGRGTTVMVRQLFSTLPVRRKEFQRNIKRKFV 168 (672)
T ss_pred hhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eeccccCCCCCEEEHhhhcccCCCchHHhhcchhhhhh
Confidence 79999999999999999999999999999999996 68888 689999999999999999999999988664 8899999
Q ss_pred HHHHHHHhhhhccCceEEEEEE---CCeeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEe
Q 008397 79 KIVDLLSRMAIHHTNVSFSCRK---HGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVS 155 (567)
Q Consensus 79 ~I~~~v~~yAl~~p~V~F~l~~---~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is 155 (567)
+++.+++.||+.+++|.|.|.+ .++..++++|.+.++.++.|+.+||...+..|.++..-. ....-.
T Consensus 169 k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~is------~~~~g~---- 238 (672)
T KOG1978|consen 169 KLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIFIS------SCHHGC---- 238 (672)
T ss_pred hHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccccc------cccccc----
Confidence 9999999999999999999987 455689999999999999999999999999988876111 111111
Q ss_pred CCCCCCCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHH
Q 008397 156 NSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQ 235 (567)
Q Consensus 156 ~~~~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~ 235 (567)
..++...||+|||+|||..+.+.+.|+.+|..+... .| |+|.+|.+.+||||.|+|+.|.|.+|..++..++
T Consensus 239 ---~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~~-q~----l~i~V~~~~iDvNvtPDK~~vll~~e~~vl~~l~ 310 (672)
T KOG1978|consen 239 ---GRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNER-QY----LFLDVPEGCIDVNVTPDKRQVLLSNERSVLFSLR 310 (672)
T ss_pred ---cccCccceeeeecCccCCHHHHHHHHHHHhhhhccc-cc----eeeeccccceeeeeCCCcceeeccchHHHHHHHH
Confidence 112356799999999999999999999999887532 23 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccccccCCC--CCCC---CCCCCCCC--CCC--CCccc--cCCC-CcceecCCC-----CCC--
Q 008397 236 SAVELKLRQSNDSRTYKEQTVESSP--SSPY---NPSKDLHL--NPS--GSKLQ--KVPV-NKMVRTDSS-----DPA-- 296 (567)
Q Consensus 236 ~~i~~~L~~~~~~r~~~~~~~~~~~--~~~~---~~~~~~~~--~~~--~~~~~--~~~~-~~~vr~d~~-----~~~-- 296 (567)
+.+..++....... +......|.. .... +...+... ..+ +.... ...| +..+..+.. .|+
T Consensus 311 ~~l~~~~~s~~~~~-~~~~s~~p~k~~~s~~~~s~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~~pd~~ 389 (672)
T KOG1978|consen 311 NSLVDFYNSNCDLN-FSDVSMLPVQNPSSLTERSDPIENKLVSRTDSMIGIKTNISEDHPNEESNFLTPEFLKITTPDKE 389 (672)
T ss_pred HHHHHHHhhccccc-cccccccCccCCCccccccccchhhhcccchhhhccccccccCCCcccccccCcccccccCCccc
Confidence 99999997432221 1111111111 0000 00000000 000 00000 0000 000000000 000
Q ss_pred --cc----cccc------------------ccCCCCCCCCCCCCc---cccch--hhhhhccccc-------ccccccHH
Q 008397 297 --GR----LHAY------------------VQSKPHTSVASGPNL---SAVRS--SVRQRRNLNE-------TADLTSIQ 340 (567)
Q Consensus 297 --~~----l~~~------------------~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~-------~~~l~Sv~ 340 (567)
.+ ++.. +......+.+..... ..+.+ ........+. +....-.+
T Consensus 390 ~~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~t~s~~~~se~~~~se~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (672)
T KOG1978|consen 390 KECSSKKDLTAIPLEKNPSLKKPDLEDTENLEDETNVETPSSSPLSEDKSLSEQEKLKIEVYSKIKFARKASETKINPGH 469 (672)
T ss_pred ccccCCCCccccccccCccccccchhhhhhccccccccCCCcccchhhccccccchhhhccccchhhhcccchhhcCccc
Confidence 00 0000 000000000000000 00000 0000000000 00000000
Q ss_pred HHHHHhhhhcCCc-ccccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcccCeEecCCCcchhHHH
Q 008397 341 ELIDDVDRNCHSG-LLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELL 419 (567)
Q Consensus 341 ~l~~~i~~~~~~~-l~~~~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f~n~~~~~L~~P~~l~~Ll 419 (567)
+ .+++...+.+ -...|..+..|||.+..||++..+.+|+||||||+.|.+.||.++.... +..|+|.-|..|.
T Consensus 470 N--~~~e~~~s~~v~k~df~~meiigqfNlgFIi~~l~~dlfIvdqha~dEk~Nfe~l~~~~~-L~~Q~l~~P~~l~--- 543 (672)
T KOG1978|consen 470 N--DSVELEESREVAKADFSRMEIIGQFNLGFIIVKLEKDLFIVDQHASDEKRNFERLQSTTV-LKAQPLICPQALD--- 543 (672)
T ss_pred c--hhhhchhhhcccccchhhcceeeeccccceeeeccCceEEeccchhhhhhhHHHHHHhcc-cccccccCccccc---
Confidence 0 0011111112 2446778999999999999999999999999999999999999998874 7789999999888
Q ss_pred hhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEecC-----CC---ccccCcccCCCCCCCCCHHHH
Q 008397 420 MLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTR-----GN---LSRLPIILDQYTPDMDRIPEF 491 (567)
Q Consensus 420 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~-----G~---L~siP~ll~~y~P~~~~Lp~f 491 (567)
++. . .-..|.++.+.|.+. ||.+..+ |. +.++|.... ++-..+.|-++
T Consensus 544 -ls~--~-------------------nE~vl~d~l~~f~kn-GF~~~~~~n~~~~~~~~l~~~p~skn-~~fg~~dl~El 599 (672)
T KOG1978|consen 544 -LSA--I-------------------NEMVLLDNLPLFEKN-GFKVKIDENAPDGKRVRLLSVPVSKN-QTFGVSDLKEL 599 (672)
T ss_pred -cCc--c-------------------cceeehhhhHHHHhc-CceEeecCCCcccceeeecccccccc-cccCHHHHHHH
Confidence 322 2 122466777999884 8887643 22 667776543 33344667777
Q ss_pred HHHhcCC
Q 008397 492 VLCLGND 498 (567)
Q Consensus 492 l~~L~~~ 498 (567)
+.-|...
T Consensus 600 i~~l~~~ 606 (672)
T KOG1978|consen 600 ISVLKNF 606 (672)
T ss_pred HHHHhhC
Confidence 7666653
No 6
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.97 E-value=5.6e-30 Score=232.28 Aligned_cols=127 Identities=54% Similarity=0.925 Sum_probs=116.5
Q ss_pred CHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeEeCCchHHHHHHHHhhccCCC
Q 008397 115 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPK 194 (567)
Q Consensus 115 s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~ 194 (567)
+++++|..+||.+.+++|++++.+. +.....++++||+|+|....++..||+|||||+|.++.|.++|+++|+.++|+
T Consensus 1 ~~~~~i~~v~G~~~~~~li~i~~~~--~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~ 78 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEISD--DDDDLGFKVKGLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPK 78 (127)
T ss_pred CHHHHHHHHhCHHHHhcceEEeccc--CCcCCcEEEEEEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcC
Confidence 4789999999999999999998654 10013699999999998876688999999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHHh
Q 008397 195 ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 243 (567)
Q Consensus 195 ~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L~ 243 (567)
++||+++|+|++||+.|||||||+|+||+|.+|+.|++.|+++|+++|+
T Consensus 79 ~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~ 127 (127)
T cd03483 79 GAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred CCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999884
No 7
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.96 E-value=4.9e-29 Score=223.74 Aligned_cols=118 Identities=34% Similarity=0.627 Sum_probs=105.8
Q ss_pred HHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCCCC-CceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCc
Q 008397 120 IRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKP 198 (567)
Q Consensus 120 i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~~-k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P 198 (567)
|+++||.+++++|++++.+. ..++++||+|.|+..++ +..||+|||||+|.++.|.++|+++|+..++.+++|
T Consensus 1 I~~i~G~~~~~~l~~i~~~~------~~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P 74 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSED------EDFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYP 74 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEEE------CCEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-
T ss_pred CeEeECHHHHhccEEEeccC------CCEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCc
Confidence 68999999999999999877 78999999999987644 689999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHHh
Q 008397 199 FIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 243 (567)
Q Consensus 199 ~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L~ 243 (567)
+++|+|+|||+.|||||||+|+||+|.+|++|++.|+++|.++|+
T Consensus 75 ~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 75 IFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999984
No 8
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.96 E-value=9.1e-29 Score=223.17 Aligned_cols=121 Identities=24% Similarity=0.428 Sum_probs=114.0
Q ss_pred HHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCCC-CCceEEEEEcCeEeCCchHHHHHHHHhhccCCCC
Q 008397 117 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 195 (567)
Q Consensus 117 ~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~-~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~ 195 (567)
.+++..+||...+++|++++.+. .+++++||+|.|+.++ ++..||+|||||+|.++.|.++|+++|+.+++.+
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~~------~~~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~ 75 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEEA------GGLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGG 75 (123)
T ss_pred HhHHHHHhCHHHHhccceEeccC------CCEEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCC
Confidence 57999999999999999999665 7799999999998654 4788999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHHh
Q 008397 196 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 243 (567)
Q Consensus 196 ~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L~ 243 (567)
+||+++|+|+|||+.|||||||+|+||+|.+|+.|.++|.++++++|+
T Consensus 76 ~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 76 RHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred CCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999883
No 9
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.95 E-value=1.1e-27 Score=218.81 Aligned_cols=124 Identities=23% Similarity=0.469 Sum_probs=113.3
Q ss_pred CHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCC--CCC-CCceEEEEEcCeEeCC-chHHHHHHHHhhc
Q 008397 115 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN--YVA-KKTTMVLFVNDRLVEC-APLKRAVEIVYAA 190 (567)
Q Consensus 115 s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~--~~~-~k~~q~lFIN~R~V~~-~~l~kaI~~~y~~ 190 (567)
++.++|.++||...+++|++++.+. +. .+++++||+|.|. ... ++..||+|||||+|.+ +.+.++|+++|+.
T Consensus 1 ~l~~~i~~v~G~~~~~~li~i~~~~--~~--~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~ 76 (132)
T cd03485 1 DHKEALARVLGTAVAANMVPVQSTD--ED--PQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSS 76 (132)
T ss_pred CHHHHHHHHhCHHHHhccEEEeccC--CC--CcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHH
Confidence 4689999999999999999998764 22 4699999999994 343 4788999999999999 9999999999999
Q ss_pred cC---CCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHH
Q 008397 191 TF---PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 242 (567)
Q Consensus 191 ~l---p~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L 242 (567)
++ |.++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++++.++
T Consensus 77 ~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 77 AYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred HhccccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 99 99999999999999999999999999999999999999999999998875
No 10
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.95 E-value=1.2e-27 Score=221.00 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=114.3
Q ss_pred CHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeEeCCchHHHHHHHHhhc----
Q 008397 115 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA---- 190 (567)
Q Consensus 115 s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~---- 190 (567)
++.+++.++||.+.++.|++++.+. .+++++||||.|+ ..+|..||+|||||+|.++.|.++|+++|+.
T Consensus 1 ~~~~~i~~i~G~~~~~~l~~v~~~~------~~~~v~G~is~p~-~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~ 73 (141)
T cd03486 1 SILSVFKQIYGLVLAQKLKEVSAKF------QEYEVSGYISSEG-HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAV 73 (141)
T ss_pred CHHHHHHHHhChhhhccEEEeeccc------CcEEEEEEEcCCC-CCCCceEEEEECCEEechHHHHHHHHHHHhhcccc
Confidence 4678999999999999999999877 7899999999998 4568899999999999999999999999999
Q ss_pred ----cC-----------CCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHHh
Q 008397 191 ----TF-----------PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 243 (567)
Q Consensus 191 ----~l-----------p~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L~ 243 (567)
.+ |+++||+++|+|+|||+.|||||||+|+||+|.+|+.|.++|+++|+++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 74 AKNKSSPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred ccccccccccccccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHhC
Confidence 55 889999999999999999999999999999999999999999999999983
No 11
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=99.95 E-value=3.7e-28 Score=260.55 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=174.7
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEE--EEEeCCeecc-ccccccCCCCcEEEEcccccccHHHHHhhc-CchHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYR--VSYRDGVMES-EPKACAAVKGTQIMVENLFYNMIARRKTLQ-NSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~--~~~~~G~~~~-~~~~~a~~~GTtV~V~dLFyN~PvRrk~lk-s~~~e 76 (567)
||||||||||||.+|.+.++||.++-+.||+ ....+.+... +........||||+|+||||++|||||... .+..+
T Consensus 90 yGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRRr~k~~~P~k~ 169 (1142)
T KOG1977|consen 90 YGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPVRRRLKCMDPRKE 169 (1142)
T ss_pred cccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchhhhhhhcCCHHHH
Confidence 8999999999999999999999999999997 3344444432 233446688999999999999999999544 78999
Q ss_pred HHHHHHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeC
Q 008397 77 YTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSN 156 (567)
Q Consensus 77 ~~~I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~ 156 (567)
+.+|+..|.++|+.||+|+|++.++.+...+|++.+..++.+.+..-- ++.+.. |.
T Consensus 170 fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilfr~k----------------------~~e~~~--s~ 225 (1142)
T KOG1977|consen 170 FEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILFRYK----------------------EFELSS--SE 225 (1142)
T ss_pred HHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhhhhc----------------------cccccc--ch
Confidence 999999999999999999999999877788999988555443332222 222210 01
Q ss_pred CCCCCCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHH
Q 008397 157 SNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQS 236 (567)
Q Consensus 157 ~~~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~ 236 (567)
....++.+++|||||+|-.....+.+.++-+.-.- ...|-++|+|.||--.+||-.+|+|+-|.|.+|+.++..|++
T Consensus 226 --~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~~~~-~~~P~yvi~v~cp~~ly~vs~epakt~ieF~~w~~~l~~I~~ 302 (1142)
T KOG1977|consen 226 --AHYNKTMGFLFVNKRLVLRTKKHKLIDQLLRKESI-ICKPKYVINVQCPFCLYDVSMEPAKTLIEFQNWDTLLFCIQE 302 (1142)
T ss_pred --hccccccceeeecchhhhccchhhHHHHHHHhhhe-eccCcceeecccchhhhhhhcCcccchhhhhcchhhHhHHHH
Confidence 11236678999999999998888888887664221 246778999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 008397 237 AVELKLRQ 244 (567)
Q Consensus 237 ~i~~~L~~ 244 (567)
.+..+|.+
T Consensus 303 ~~~~~~kk 310 (1142)
T KOG1977|consen 303 GVKMFLKK 310 (1142)
T ss_pred hhhhhhhc
Confidence 99998865
No 12
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.94 E-value=1e-26 Score=209.26 Aligned_cols=120 Identities=40% Similarity=0.639 Sum_probs=113.1
Q ss_pred HHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCC-CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCC
Q 008397 117 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 195 (567)
Q Consensus 117 ~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~-~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~ 195 (567)
.+++.++||..+.++|++++.+. ..++++||+|.|+.. .++..|++|||||+|.++.|.++|+++|+.+++.+
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~~------~~~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~ 75 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELES------GDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKG 75 (122)
T ss_pred HHHHHHHcCHHHHhcceEEeccC------CCEEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCcCC
Confidence 57899999999999999999877 789999999999864 45788999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHH
Q 008397 196 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 242 (567)
Q Consensus 196 ~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L 242 (567)
+||+++|+|+|||+.+||||||+|+||+|.+|+.|.+.|+++++++|
T Consensus 76 ~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 76 RYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred CCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998875
No 13
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.94 E-value=4.7e-26 Score=210.49 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=111.5
Q ss_pred CHHHHHHHHhChhhhhcccccccccc-----------CCCCCcceEEEEEEeCC--CCCC-CCceEEEEEcCeEeCCchH
Q 008397 115 SRLDSIRTVYGVSVASNLVQLEASEY-----------NDSSSFVFKMDGYVSNS--NYVA-KKTTMVLFVNDRLVECAPL 180 (567)
Q Consensus 115 s~~~~i~~i~G~~~~~~l~~v~~~~~-----------~~~~~~~~~v~G~is~~--~~~~-~k~~q~lFIN~R~V~~~~l 180 (567)
++.++|..+||..+++.|++++.... ......+++++||+|+| +..+ ++..||+|||||+|.++.|
T Consensus 1 ~~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l 80 (142)
T cd03484 1 DIKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKV 80 (142)
T ss_pred CHHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHH
Confidence 46899999999999999999986430 00001469999999999 4432 3678999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHH
Q 008397 181 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 242 (567)
Q Consensus 181 ~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L 242 (567)
.++|+++|+.++ +++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|++++++++
T Consensus 81 ~~aI~~~y~~~~-~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~ 141 (142)
T cd03484 81 AKLINEVYKSFN-SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHHhc-CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHh
Confidence 999999999998 7899999999999999999999999999999999999999999999886
No 14
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.82 E-value=1.6e-19 Score=200.62 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=151.1
Q ss_pred CCCcchhHHHHhhhcce------EEEeecCCCC---CeEEEEE--eCCeeccccccccCCCCcEEE--EcccccccHHHH
Q 008397 1 MGFRGEALASMTYVGHV------TVTTITKGHL---HGYRVSY--RDGVMESEPKACAAVKGTQIM--VENLFYNMIARR 67 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l------~I~Tk~~~~~---~g~~~~~--~~G~~~~~~~~~a~~~GTtV~--V~dLFyN~PvRr 67 (567)
.||||++|+++..+|++ +|+|++.+.. .++.+.+ ++|++....+++++..||+|+ |+||||| |+
T Consensus 109 ~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn---R~ 185 (659)
T PRK14867 109 RGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN---RR 185 (659)
T ss_pred CCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---hh
Confidence 48999999999999976 6999987664 4556666 789887422577789999999 9999999 33
Q ss_pred HhhcCchHHHHHHHHHHHhhhhccCceEEEEEECCe----eeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCC
Q 008397 68 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA----ARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDS 143 (567)
Q Consensus 68 k~lks~~~e~~~I~~~v~~yAl~~p~V~F~l~~~~~----~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~ 143 (567)
|.. |.+.|+++||+||+++|+|..+++ .+....+++ ...+++..+||.. +.+|+++....
T Consensus 186 --------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp~--~~~e~~ph~~G~~-~~~Li~i~~~~---- 249 (659)
T PRK14867 186 --------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIPE--KPEEMKPHPYGLT-TDELLYIARKT---- 249 (659)
T ss_pred --------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecCc--CHHHHhhccCccc-hhhceehhccC----
Confidence 555 899999999999999999999843 244455554 7899999999999 88999998776
Q ss_pred CCcceEEEEEEeCCCCCCC-CceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCc
Q 008397 144 SSFVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEH 210 (567)
Q Consensus 144 ~~~~~~v~G~is~~~~~~~-k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~ 210 (567)
..++++||+ .|.+++. +..|+ .|.++.|.++|.++|+..+|.++||+++|+|++||-.
T Consensus 250 --~~~~v~gfl-~p~~sR~~~~~~~------~V~~~~l~~ai~~ay~~~l~~~~~P~~~L~l~i~~~~ 308 (659)
T PRK14867 250 --DSSKVSSML-NSELSRVTTKRIK------ELEEYVLRDLLLENYRDSVFWDTVVSCYLNFDFTKYF 308 (659)
T ss_pred --CceEEEEEe-cchhccCCCCcEE------EEccHHHHHHHHHHHhhcccCCCcceEEEEEEeCccc
Confidence 779999998 7777643 55565 7888899999999999999999999999999999854
No 15
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.74 E-value=6.4e-18 Score=147.17 Aligned_cols=101 Identities=33% Similarity=0.469 Sum_probs=92.7
Q ss_pred HHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCCC-CCceEEEEEcCeEeC-CchHHHHHHHHhhccC--
Q 008397 117 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVE-CAPLKRAVEIVYAATF-- 192 (567)
Q Consensus 117 ~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~-~k~~q~lFIN~R~V~-~~~l~kaI~~~y~~~l-- 192 (567)
.+++..+||...+..+++++.+. .+++++|+++.++..+ ++..||+|||||+|. +..+.++|.++|...+
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~------~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~ 75 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGES------DGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNG 75 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEeccC------CCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcc
Confidence 57899999999988899998776 6799999999998653 367899999999999 9999999999999999
Q ss_pred -CCCCCcEEEEEEEcCCCceeeccCCCCCeEe
Q 008397 193 -PKASKPFIYMSIVLPPEHVDVNVHPTKREVS 223 (567)
Q Consensus 193 -p~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~ 223 (567)
+.+++|+++|+++||++.+||||||+|++|+
T Consensus 76 ~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 76 DDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred cCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 9999999999999999999999999999984
No 16
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=99.73 E-value=4.9e-18 Score=157.18 Aligned_cols=131 Identities=21% Similarity=0.353 Sum_probs=106.1
Q ss_pred cEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhccc-CeEecCCCcchhHHHhhhccccccccccCcCchhH
Q 008397 361 CSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHF-NAIQLSDPAPLSELLMLALKEEDLDVENSENDDLK 439 (567)
Q Consensus 361 ~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f~n~-~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~~~ 439 (567)
.+++||++++|||++.+++||+|||||||||+.||++++++.+- .+|.|..|+.+. ++.
T Consensus 3 ~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P~~~~------ls~-------------- 62 (144)
T PF08676_consen 3 LKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFPIELE------LSP-------------- 62 (144)
T ss_dssp -EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEEEEEE--------H--------------
T ss_pred eeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCCccCC------CCH--------------
Confidence 67999999999999999999999999999999999999999433 889999998887 432
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcceEEecCCC----ccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 008397 440 EKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAAL 515 (567)
Q Consensus 440 ~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~----L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~~i~r~l 515 (567)
.+.+.+.++.+.|.+ +||+++.+|+ |+++|.++...... +.+++++..+.... +. ...++.++..+
T Consensus 63 -----~e~~~l~~~~~~L~~-~Gf~~~~~~~~~~~v~~vP~~l~~~~~~-~~l~~ll~~l~~~~--~~-~~~~~~~~~~~ 132 (144)
T PF08676_consen 63 -----QEAELLEENKEELEK-LGFEIEEFGENSIIVRSVPAILREQDLE-ELLRELLEELQEKE--ES-PEIIEELLASM 132 (144)
T ss_dssp -----HHHHHHHHHHHHHHH-TT-EEEEESTTEEEEEEEECCCTTSSHH-HHHHHHHHHHCTCS--S--CCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHh-CCeEEEEecCCEEEEEEeCcccccccHH-HHHHHHHHHHHhCC--Cc-HHHHHHHHHHH
Confidence 278899999999999 7999997666 99999999985444 55667777766544 22 46788899999
Q ss_pred hhcccC
Q 008397 516 GNFYAM 521 (567)
Q Consensus 516 A~fys~ 521 (567)
||--|+
T Consensus 133 AC~~Ai 138 (144)
T PF08676_consen 133 ACRSAI 138 (144)
T ss_dssp HTTSSS
T ss_pred HHHHhh
Confidence 998765
No 17
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.66 E-value=5.6e-16 Score=141.81 Aligned_cols=110 Identities=21% Similarity=0.383 Sum_probs=93.0
Q ss_pred cEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhc--cc-CeEecCCCcchhHHHhhhccccccccccCcCch
Q 008397 361 CSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFA--HF-NAIQLSDPAPLSELLMLALKEEDLDVENSENDD 437 (567)
Q Consensus 361 ~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f~--n~-~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~ 437 (567)
+.++||++++||+++.+++||+|||||||||++||++++.+. .. .+|.|..|+.+. ++..
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~~i~------l~~~----------- 64 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVILE------LSPE----------- 64 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCEEEE------cCHH-----------
Confidence 568999999999999999999999999999999999999873 33 379999999887 4322
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcceEEecCCC----ccccCcccCCCCCCCCCHHHHHHHhcC
Q 008397 438 LKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGN 497 (567)
Q Consensus 438 ~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~----L~siP~ll~~y~P~~~~Lp~fl~~L~~ 497 (567)
+.+++.++.+.|++ +||+++.+|+ |+++|.++...... +.+++++..+..
T Consensus 65 --------e~~~l~~~~~~l~~-~Gf~~~~~~~~~~~i~~vP~~l~~~~~~-~~l~~ll~~l~~ 118 (136)
T smart00853 65 --------EAALLEEHQELLAR-LGFELEIFGGQSVILRSVPALLRQQNLQ-ELIPELLDLLAE 118 (136)
T ss_pred --------HHHHHHHHHHHHHH-cCeEEEccCCCEEEEEeECccccCcCHH-HHHHHHHHHHHh
Confidence 67889999999999 7999998876 99999998876554 667777776665
No 18
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.51 E-value=1.9e-14 Score=160.78 Aligned_cols=137 Identities=17% Similarity=0.278 Sum_probs=116.8
Q ss_pred CCCcchhHHHHhhhcc------eEEEeecCCCCCeE--EEEEeCCe---ec--cccccccCCCCcEEEEcccccccHHHH
Q 008397 1 MGFRGEALASMTYVGH------VTVTTITKGHLHGY--RVSYRDGV---ME--SEPKACAAVKGTQIMVENLFYNMIARR 67 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~------l~I~Tk~~~~~~g~--~~~~~~G~---~~--~~~~~~a~~~GTtV~V~dLFyN~PvRr 67 (567)
+||||++|+++..+|+ ++|+|++.++..|| ++.+..|+ .+ .+..++++.+||+|+|+ ||+|+|+|+
T Consensus 118 rG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~ 196 (795)
T PRK14868 118 RGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQ 196 (795)
T ss_pred CCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhh
Confidence 4899999999999998 59999999888885 77787774 21 23457788999999999 999999997
Q ss_pred HhhcCchHHHHHHHHHHHhhhhccCceEEEEEECCeeeeEEEc-CCCCCHHHHHHHH----hChhhhhccccccccccCC
Q 008397 68 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHS-IATSSRLDSIRTV----YGVSVASNLVQLEASEYND 142 (567)
Q Consensus 68 k~lks~~~e~~~I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t-~~~~s~~~~i~~i----~G~~~~~~l~~v~~~~~~~ 142 (567)
| |.+.|+++||+||+++|+|..++ . .+.+ ++++.+.+.+..+ ||.++ ..|+++....
T Consensus 197 k-----------I~eyl~r~Al~nP~a~f~l~~~~--~-~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t--- 258 (795)
T PRK14868 197 Q-----------LHDYIKHTAVVNPHARIELREPD--E-SLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEAT--- 258 (795)
T ss_pred h-----------HHHHHHHHHhhCCCeEEEEEECC--E-EEEecccccccccCchhccCCCCCcCH-HHHHHHHhcc---
Confidence 7 99999999999999999999984 3 3555 6778899999999 99998 8899998777
Q ss_pred CCCcceEEEEEEeCCCCC
Q 008397 143 SSSFVFKMDGYVSNSNYV 160 (567)
Q Consensus 143 ~~~~~~~v~G~is~~~~~ 160 (567)
..+++.||+ .+.++
T Consensus 259 ---~~~~l~gFL-~~efs 272 (795)
T PRK14868 259 ---DSYSVSGFL-QEEFT 272 (795)
T ss_pred ---CCcEeHHhh-hhhhc
Confidence 779999999 66655
No 19
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.41 E-value=5.4e-12 Score=141.88 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=142.2
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeC-Ceecccc--ccccCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEP--KACAAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~-G~~~~~~--~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
+|||||||+|++++| +++|+|+..+. .|+..|++ |+++..+ .+++...||+|+ | .|.|++|.++...+
T Consensus 79 ~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~----F--~Pd~~~F~~~~~~~ 150 (594)
T smart00433 79 GGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVT----F--KPDLEIFGMTTDDD 150 (594)
T ss_pred CCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEE----E--EECHHHhCCcccch
Confidence 599999999999996 79999998855 49999964 9887433 456778999999 5 79999998776889
Q ss_pred HHHHHHHHHhhhhccCceEEEEEECCeee-eEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEe
Q 008397 77 YTKIVDLLSRMAIHHTNVSFSCRKHGAAR-ADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVS 155 (567)
Q Consensus 77 ~~~I~~~v~~yAl~~p~V~F~l~~~~~~~-~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is 155 (567)
+..|.+.++++|+.||+|+|+|....... ..+. ..+.+.+-+..+.+....-...++.... +. .+..++..+.
T Consensus 151 ~~~i~~rl~~~A~l~pgl~i~l~der~~~~~~f~--~~~Gl~~yv~~~~~~~~~~~~~~i~~~~--~~--~~~~veval~ 224 (594)
T smart00433 151 FELLKRRLRELAFLNKGVKITLNDERSDEEETFL--FEGGIKDYVELLNKNKELLSPEPTYIEG--EK--DNIRVEVAFQ 224 (594)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCCcceEEE--CCCCHHHHHHHHhCCCCcccCCCeEEEE--Ee--CCcEEEEEEE
Confidence 99999999999999999999998643111 1122 3456788777776543221111222221 11 3566777776
Q ss_pred CCCCCCCCceEEEEEcCeEeCC---------chHHHHHHHHhhccCC-C---------CCCcEEEEEEEcCCCceeeccC
Q 008397 156 NSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAATFP-K---------ASKPFIYMSIVLPPEHVDVNVH 216 (567)
Q Consensus 156 ~~~~~~~k~~q~lFIN~R~V~~---------~~l~kaI~~~y~~~lp-~---------~~~P~~~L~i~i~p~~vDVNvh 216 (567)
-.+. ....++-|||+.+... ..|.++|+..++.... + ....++++++.++....|=
T Consensus 225 ~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~Feg--- 299 (594)
T smart00433 225 YTDG--YSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFEG--- 299 (594)
T ss_pred ccCC--CCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheecc---
Confidence 5432 1357899999999873 4677777776654211 1 2467899999999776653
Q ss_pred CCCCe
Q 008397 217 PTKRE 221 (567)
Q Consensus 217 PtK~e 221 (567)
.||..
T Consensus 300 QTK~k 304 (594)
T smart00433 300 QTKEK 304 (594)
T ss_pred ccccc
Confidence 55644
No 20
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.21 E-value=5.7e-10 Score=126.33 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=129.3
Q ss_pred CCCcchhHHHHhhhcc-eEEEeecCCCCCeEEEEEeCCeecccccccc--CCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 1 MGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKACA--AVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~-l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a--~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
.||||+||+||+++|+ ++|+|+..+. +|+..|.+|......++++ .+.||+|+ | .|.|++| ++...++
T Consensus 115 ~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~~~~~GT~I~----F--~Pd~~~F-~~~~~e~ 185 (638)
T PRK05644 115 GGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGETDETGTTVT----F--KPDPEIF-ETTEFDY 185 (638)
T ss_pred CCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCCcCCCCcEEE----E--EECHHHc-CCcccCH
Confidence 5999999999999998 9999997654 9999999999873334444 68999999 4 8999999 8888899
Q ss_pred HHHHHHHHhhhhccCceEEEEEECCe---eeeEEEcCCCCCHHHHHHHHhChhhhhccc--cccccccCCCCCcceEEEE
Q 008397 78 TKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRTVYGVSVASNLV--QLEASEYNDSSSFVFKMDG 152 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p~V~F~l~~~~~---~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~--~v~~~~~~~~~~~~~~v~G 152 (567)
..|.+.|.++|+.||+|+|+|..... ....|+..+ .+.+-+..+-... ..+. ++.++. +. .++.++.
T Consensus 186 ~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~--Gl~dyv~~l~~~~--~~~~~~~i~~~~--~~--~~~~vev 257 (638)
T PRK05644 186 DTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYEG--GIKEYVEYLNRNK--EPLHEEPIYFEG--EK--DGIEVEV 257 (638)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcCC--CHHHHHHHHhcCC--CcCCCCCeEEEe--ec--cCeEEEE
Confidence 99999999999999999999986421 123455443 3555555433221 1111 122221 11 2344444
Q ss_pred EEeCCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhc--cCCCC----------CCcEEEEEEEcCCCce
Q 008397 153 YVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFPKA----------SKPFIYMSIVLPPEHV 211 (567)
Q Consensus 153 ~is~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~--~lp~~----------~~P~~~L~i~i~p~~v 211 (567)
-+.-.+ .....++-|||+-+-... .|.++|+..... .+.++ ..=++++++.++--..
T Consensus 258 al~~~~--~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~~~Kk~~~~i~~~dIregl~~vVsv~i~nP~F 335 (638)
T PRK05644 258 AMQYND--GYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKLLKEKDDNLTGEDVREGLTAVISVKHPEPQF 335 (638)
T ss_pred EEEecC--CCceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCChhHHhhceEEEEEEecCCCcc
Confidence 443322 113457899999987642 344444443322 11111 1336788998886555
Q ss_pred eeccCCCCCeE
Q 008397 212 DVNVHPTKREV 222 (567)
Q Consensus 212 DVNvhPtK~eV 222 (567)
|= .||...
T Consensus 336 ~g---QTKekL 343 (638)
T PRK05644 336 EG---QTKTKL 343 (638)
T ss_pred cC---cccccc
Confidence 43 566544
No 21
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.21 E-value=6.6e-10 Score=126.53 Aligned_cols=221 Identities=13% Similarity=0.156 Sum_probs=136.2
Q ss_pred CCCcchhHHHHhhhcc-eEEEeecCCCCCeEEEEEeCCeeccc--cccccCCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 1 MGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESE--PKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~-l~I~Tk~~~~~~g~~~~~~~G~~~~~--~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
+|||||||+||+++|+ ++|+|+..+.. |+..|++|.+... ..+++.+.||+|+ |++.|+ +|+ +...++
T Consensus 108 ~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~~~~~G~~~~~l~~~~~~~~~GT~V~----F~pdp~--~F~-~~~~e~ 178 (654)
T TIGR01059 108 GGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQEFERGIPLGPLEVVGETKKTGTTVR----FWPDPE--IFE-TTEFDF 178 (654)
T ss_pred CCccchhHHHHHHhcCeEEEEEEECCeE--EEEEEeCCCcccCceeccCCCCCCcEEE----EEEChH--HhC-CcccCH
Confidence 5999999999999998 99999976553 9999999987642 3466788999999 999999 566 778899
Q ss_pred HHHHHHHHhhhhccCceEEEEEECCe---eeeEEEcCCCCCHHHHHHHHhChhhhhcc--ccccccccCCCCCcceEEEE
Q 008397 78 TKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRTVYGVSVASNL--VQLEASEYNDSSSFVFKMDG 152 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p~V~F~l~~~~~---~~~~l~t~~~~s~~~~i~~i~G~~~~~~l--~~v~~~~~~~~~~~~~~v~G 152 (567)
..|.+.|+++|+.||+|+|+|..... ....+++.++ +.+-+..+ ... ...+ .++.++. +. .++.++.
T Consensus 179 ~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~G--l~~yv~~l-~~~-~~~l~~~~i~~~~--~~--~~~~vev 250 (654)
T TIGR01059 179 DILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEGG--IKSFVKYL-NRN-KEPLHEEIIYIKG--EK--EGIEVEV 250 (654)
T ss_pred HHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCCc--HHHHHHHH-hcC-CCcCCCCCeEEEe--cc--cCeEEEE
Confidence 99999999999999999999986421 1334555442 44444433 211 0111 0122221 11 2444554
Q ss_pred EEeCCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhcc-CCCC-----------CCcEEEEEEEcCCCce
Q 008397 153 YVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAAT-FPKA-----------SKPFIYMSIVLPPEHV 211 (567)
Q Consensus 153 ~is~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~~-lp~~-----------~~P~~~L~i~i~p~~v 211 (567)
.+.-.+. ....++-|||+-+-... .|.++|+...+.. +-+. ..=++++++.++.-..
T Consensus 251 a~~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~l~K~~~~~i~~~diregl~~vvsv~i~~P~F 328 (654)
T TIGR01059 251 ALQWNDG--YSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNKLLKESKPNLTGEDIREGLTAVISVKVPDPQF 328 (654)
T ss_pred EEEecCC--CceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHHHHhhccEEEEEEecCCCcc
Confidence 4443321 13456899999775532 3444554433221 1111 1346788888886555
Q ss_pred eeccCCCCCeEecCCh-HHHHHHHHHHHHHHHh
Q 008397 212 DVNVHPTKREVSLLNQ-ELIVEKIQSAVELKLR 243 (567)
Q Consensus 212 DVNvhPtK~eV~F~~e-~~I~~~i~~~i~~~L~ 243 (567)
|= .||....=..- ..+.+.+++.+..+|.
T Consensus 329 ~g---QTK~kL~~~~v~~~v~~~v~~~l~~~l~ 358 (654)
T TIGR01059 329 EG---QTKTKLGNSEVRSIVESLVYEKLTEFFE 358 (654)
T ss_pred cC---cccccccChhHHHHHHHHHHHHHHHHHH
Confidence 43 56654431111 1133444455555553
No 22
>PRK05218 heat shock protein 90; Provisional
Probab=99.12 E-value=9.3e-10 Score=124.29 Aligned_cols=202 Identities=19% Similarity=0.256 Sum_probs=141.8
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCC-CCCeEEEEEeCCeecccccccc-CCCCcEEEEcccccccHHHHHhhcCchHHH-
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKG-HLHGYRVSYRDGVMESEPKACA-AVKGTQIMVENLFYNMIARRKTLQNSSDDY- 77 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~-~~~g~~~~~~~G~~~~~~~~~a-~~~GTtV~V~dLFyN~PvRrk~lks~~~e~- 77 (567)
|..|--+.|+..|| +|+|+||+.+ +..||+....+|... ...++. .+.||+|+|. |++...|+
T Consensus 120 G~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~-~i~~~~~~~~GT~I~l~------------Lk~~~~e~~ 186 (613)
T PRK05218 120 GQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY-TIEEIEKEERGTEITLH------------LKEDEDEFL 186 (613)
T ss_pred cccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee-EEeECCCCCCCcEEEEE------------ECcchhhhc
Confidence 34444455777775 8999999988 778999988876654 345554 3899999993 67666555
Q ss_pred --HHHHHHHHhhh--hccCceEE-----EEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhc----cccccccccCCCC
Q 008397 78 --TKIVDLLSRMA--IHHTNVSF-----SCRKHGAARADVHSIATSSRLDSIRTVYGVSVASN----LVQLEASEYNDSS 144 (567)
Q Consensus 78 --~~I~~~v~~yA--l~~p~V~F-----~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~----l~~v~~~~~~~~~ 144 (567)
.+|.++|.+|| +.+| |.| .+.+.+ +..|...++ +..+.....||...... |..+.+.. +
T Consensus 187 e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~--~~~w~~~~~-~i~~~~~~~fy~~~~~~~~~pl~~i~~~~---e- 258 (613)
T PRK05218 187 DEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSA--SALWTRSKS-EITDEEYKEFYKHLAHDFDDPLFWIHNNV---E- 258 (613)
T ss_pred CHHHHHHHHHHHHhcCCCC-EEEecccceeecCC--ccceecCCc-cccHHHHHHHhhhhcccccCCcEEEEccc---C-
Confidence 89999999999 8888 888 344444 666766554 78888889988877544 77777543 2
Q ss_pred CcceEEEEEEeCCCCC------C-CCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCC
Q 008397 145 SFVFKMDGYVSNSNYV------A-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHP 217 (567)
Q Consensus 145 ~~~~~v~G~is~~~~~------~-~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhP 217 (567)
..+.++|++..|... . .+..+.+|||+|+|.+.. ..+||. | ..|+.=-++.+.+-.|+.
T Consensus 259 -~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~---------~~lLP~--w-l~Fv~GVVDs~dLplnvS- 324 (613)
T PRK05218 259 -GPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDA---------EELLPE--Y-LRFVKGVIDSEDLPLNVS- 324 (613)
T ss_pred -CceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCch---------hhhchH--H-HhheEEEeecCCCCCccC-
Confidence 569999999888654 2 356789999999999753 244554 2 223555667777777775
Q ss_pred CCCeEecCChHHHHHHHHHHHHHHH
Q 008397 218 TKREVSLLNQELIVEKIQSAVELKL 242 (567)
Q Consensus 218 tK~eV~F~~e~~I~~~i~~~i~~~L 242 (567)
|| .++++.++..|++.|.+.+
T Consensus 325 --RE--~lq~~~~l~~i~~~l~~kv 345 (613)
T PRK05218 325 --RE--ILQEDRVVKKIRKAITKKV 345 (613)
T ss_pred --HH--HHhcCHHHHHHHHHHHHHH
Confidence 44 4556666666666655544
No 23
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.09 E-value=2e-09 Score=121.52 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=124.4
Q ss_pred CCCcchhHHHHhhhcc-eEEEeecCCCCCeEEEEEeCCeeccccc---cc-cCCCCcEEEEcccccccHHHHHhhcCchH
Q 008397 1 MGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPK---AC-AAVKGTQIMVENLFYNMIARRKTLQNSSD 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~-l~I~Tk~~~~~~g~~~~~~~G~~~~~~~---~~-a~~~GTtV~V~dLFyN~PvRrk~lks~~~ 75 (567)
.||||+||+|++++|+ ++|+|+..+.. |+..|.+|......+ ++ +...||+|++ .|.| ++|++...
T Consensus 108 gG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F------~PD~-~~F~~~~~ 178 (625)
T TIGR01055 108 GGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGKRLTGTSVHF------TPDP-EIFDSLHF 178 (625)
T ss_pred CCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCCCCCCeEEEE------EECH-HHCCCCcc
Confidence 5999999999999998 99999977654 999999998743222 55 4569999998 8999 88888888
Q ss_pred HHHHHHHHHHhhhhccCceEEEEEECCee-eeEEEcCCCCCHHHHHHHHhCh-hhhh-ccccccccccCCCCCcceEEEE
Q 008397 76 DYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGV-SVAS-NLVQLEASEYNDSSSFVFKMDG 152 (567)
Q Consensus 76 e~~~I~~~v~~yAl~~p~V~F~l~~~~~~-~~~l~t~~~~s~~~~i~~i~G~-~~~~-~l~~v~~~~~~~~~~~~~~v~G 152 (567)
++..|.+.++++|+.||+|+|+|...... ...++..+ .+.+-+..+-.. .... ..+...... .++.++-
T Consensus 179 e~~~i~~~l~~lA~lnpgi~~~l~der~~~~~~f~~~~--Gi~~yv~~l~~~~~~~~~~~~~~~~~~------~~~~ve~ 250 (625)
T TIGR01055 179 SVSRLYHILRAKAVLCRGVEIEFEDEVNNTKALWNYPD--GLKDYLSEAVNGDNTLPPKPFSGNFEG------DDEAVEW 250 (625)
T ss_pred CHHHHHHHHHHHHhhCCCcEEEEeecCCCceeEEecCc--hHHHHHHHHhcCCCCCCCCceEEEEee------CCceEEE
Confidence 99999999999999999999999864211 12243332 344444443321 1110 111011111 1222222
Q ss_pred EEeCCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhc--cCCCC---------CCcEEEEEEEcCCCcee
Q 008397 153 YVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFPKA---------SKPFIYMSIVLPPEHVD 212 (567)
Q Consensus 153 ~is~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~--~lp~~---------~~P~~~L~i~i~p~~vD 212 (567)
-+.-.+. .....++-|||+-+-..- .|.++|+...+. .++++ ..=++++++.++--..|
T Consensus 251 al~~~~~-~~~~~~~SFvN~I~T~~GGTHv~gf~~alt~~in~~~~~~~~~kk~~~i~~~diregl~~vVsvki~~P~Fe 329 (625)
T TIGR01055 251 ALLWLPE-GGELFMESYVNLIPTPQGGTHVNGLRQGLLDALREFCEMRNNLPRGVKLTAEDIWDRCSYVLSIKMQDPQFA 329 (625)
T ss_pred EEEEecC-CCCEEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCHHHHhhccEEEEEEeccCCccc
Confidence 2221111 113457899999886652 455555554432 22211 13477888888855544
Q ss_pred eccCCCCCe
Q 008397 213 VNVHPTKRE 221 (567)
Q Consensus 213 VNvhPtK~e 221 (567)
= .||..
T Consensus 330 g---QTK~k 335 (625)
T TIGR01055 330 G---QTKER 335 (625)
T ss_pred C---ccccc
Confidence 2 45544
No 24
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.06 E-value=3.6e-10 Score=123.10 Aligned_cols=91 Identities=21% Similarity=0.344 Sum_probs=78.6
Q ss_pred CCCcchhHHHHhhhcc------eEEEeecCCCCCeEEEEEe------CCeeccccccccCC--CCcEEEEcccccccHHH
Q 008397 1 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSYR------DGVMESEPKACAAV--KGTQIMVENLFYNMIAR 66 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~------l~I~Tk~~~~~~g~~~~~~------~G~~~~~~~~~a~~--~GTtV~V~dLFyN~PvR 66 (567)
+||+|++|+++..+|+ ++|+|++.++..||++.+. +|+++ +..+++.+ +||+|+|+ |+|+|+|
T Consensus 101 ~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~-~~~~~~~~~~~GT~V~v~--f~~~~~r 177 (488)
T TIGR01052 101 RGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIV-EKGEWNKPGWRGTRIELE--FKGVSYR 177 (488)
T ss_pred CCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeec-ceeecCCCCCCceEEEEE--ECCceee
Confidence 4999999999999997 8999999999999999984 78877 34556555 49999999 9999998
Q ss_pred HHhhcCchHHHHHHHHHHHhhhhccCceEEEEEECC
Q 008397 67 RKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 102 (567)
Q Consensus 67 rk~lks~~~e~~~I~~~v~~yAl~~p~V~F~l~~~~ 102 (567)
++. .+|.+.|+++|++||+++|+|.+.+
T Consensus 178 ~~k--------~~i~e~l~~~Al~nP~~~i~l~~~~ 205 (488)
T TIGR01052 178 RSK--------QGVYEYLRRTAVANPHAKIVLVDPD 205 (488)
T ss_pred ccH--------HHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 421 6899999999999999999999854
No 25
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.01 E-value=6.8e-09 Score=117.62 Aligned_cols=198 Identities=13% Similarity=0.104 Sum_probs=132.8
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccc---ccccc-CCCCcEEEEcccccccHHHHHhhcCchH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESE---PKACA-AVKGTQIMVENLFYNMIARRKTLQNSSD 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~---~~~~a-~~~GTtV~V~dLFyN~PvRrk~lks~~~ 75 (567)
.||||++|+++.++| +++|+|+..+. -|+..|.+|+.... ..+++ ...||+|++ .|.|++| ++...
T Consensus 115 gGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f------~PD~~iF-~~~~~ 185 (631)
T PRK05559 115 GGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRF------WPDPKIF-DSPKF 185 (631)
T ss_pred CcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCccccccccCCCCCcEEEE------EECHHHc-CCccc
Confidence 499999999999996 69999997654 39999999987531 34554 689999999 7999988 87788
Q ss_pred HHHHHHHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccc---cccccccCCCCCcceEEEE
Q 008397 76 DYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV---QLEASEYNDSSSFVFKMDG 152 (567)
Q Consensus 76 e~~~I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~---~v~~~~~~~~~~~~~~v~G 152 (567)
++..|.+.++++|+.+|+|+|++...+ .+..|... +.+.+.+..++.... .+. ++.++. +. .+..++.
T Consensus 186 ~~~~i~~~l~~~A~lnpgl~i~l~d~~-~~~~f~~~--~gl~~~v~~~~~~~~--~i~~~~~i~~~~--~~--~~~~vev 256 (631)
T PRK05559 186 SPERLKERLRSKAFLLPGLTITLNDER-ERQTFHYE--NGLKDYLAELNEGKE--TLPEEFVGSFEG--EA--EGEAVEW 256 (631)
T ss_pred CHHHHHHHHHHHHhhCCCeEEEEEeCC-ceEEEECC--ccHHHHHHHHhCCCC--ccCCCCceEEee--ee--ccceEEE
Confidence 899999999999999999999999876 23456555 458888888886421 121 122221 11 2344443
Q ss_pred EEeCCCCCCCCceEEEEEcCeEeCC---------chHHHHHHHHhhcc--CCC---------CCCcEEEEEEEcCCCcee
Q 008397 153 YVSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAAT--FPK---------ASKPFIYMSIVLPPEHVD 212 (567)
Q Consensus 153 ~is~~~~~~~k~~q~lFIN~R~V~~---------~~l~kaI~~~y~~~--lp~---------~~~P~~~L~i~i~p~~vD 212 (567)
-+.-.+.. ...++-|||+-+-.. ..|.++|+...+.. +.+ ...=++++++.++--..|
T Consensus 257 al~~~~~~--~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~l~k~~~~l~~~diregl~~vvsvki~~P~Fe 334 (631)
T PRK05559 257 ALQWTDEG--GENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRNLLPKGKKLEGEDVREGLAAVLSVKIPEPQFE 334 (631)
T ss_pred EEEecCCC--CeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccCCChhhHhhceEEEEEEEcCCCccc
Confidence 33322211 236889999988664 24555555544321 111 123477888888855444
Q ss_pred eccCCCCCe
Q 008397 213 VNVHPTKRE 221 (567)
Q Consensus 213 VNvhPtK~e 221 (567)
= .||..
T Consensus 335 g---QTK~k 340 (631)
T PRK05559 335 G---QTKEK 340 (631)
T ss_pred C---ccccc
Confidence 2 45544
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.78 E-value=8.7e-08 Score=109.69 Aligned_cols=193 Identities=12% Similarity=0.176 Sum_probs=122.9
Q ss_pred CCCcchhHHHHhhhcc-eEEEeecCCCCCeEEEEEeCCeecccccccc--CCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 1 MGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKACA--AVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~-l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a--~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
.||||++++++.++|+ ++|+|+..+.. |+..|.+|......++++ .+.||+|++ .|.|++| ++..-++
T Consensus 115 gGlhGvG~svvNAlS~~l~v~v~r~gk~--~~q~f~~G~~~~~l~~~g~~~~~GT~V~F------~PD~~iF-~~~~~~~ 185 (756)
T PRK14939 115 GGLHGVGVSVVNALSEWLELTIRRDGKI--HEQEFEHGVPVAPLKVVGETDKTGTEVRF------WPSPEIF-ENTEFDY 185 (756)
T ss_pred CCccCccceEeehccCeEEEEEEeCCeE--EEEEEecCccccCccccCCcCCCCcEEEE------EECHHHc-CCcccCH
Confidence 4999999999999998 99999976653 999999998764334444 679999999 8999999 7778899
Q ss_pred HHHHHHHHhhhhccCceEEEEEECCe-eeeEEEcCCCCCHHHHHHHHhCh-h-hhhccccccccccCCCCCcceEEEEEE
Q 008397 78 TKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGV-S-VASNLVQLEASEYNDSSSFVFKMDGYV 154 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p~V~F~l~~~~~-~~~~l~t~~~~s~~~~i~~i~G~-~-~~~~l~~v~~~~~~~~~~~~~~v~G~i 154 (567)
..|.+.+.++|..||+|+|++..... ....++..++ +.+-+..+=.. . +....+.+..+. .++.++..+
T Consensus 186 ~~i~~rl~elA~lnpgl~i~l~der~~~~~~f~~egG--i~~fv~~l~~~~~~~~~~~i~~~~~~------~~~~veval 257 (756)
T PRK14939 186 DILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEGG--IKAFVEYLNRNKTPLHPNIFYFSGEK------DGIGVEVAL 257 (756)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccCCCceeEEEeCCh--HHHHHHHHhcCCCcCCCCceEEEeee------CCeEEEEEE
Confidence 99999999999999999999986421 1223444332 33332222111 0 001111222222 345555444
Q ss_pred eCCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhc-cCCCC-----------CCcEEEEEEEcCCCcee
Q 008397 155 SNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA-TFPKA-----------SKPFIYMSIVLPPEHVD 212 (567)
Q Consensus 155 s~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~-~lp~~-----------~~P~~~L~i~i~p~~vD 212 (567)
.-.+ .....++-|+|+-+-... .|.++|++..+. -+.++ ..=++++++.+|--..|
T Consensus 258 ~~~~--~~~e~~~SFvN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~K~~~~~l~~~diregl~~vvsvki~~P~Fe 334 (756)
T PRK14939 258 QWND--SYQENVLCFTNNIPQRDGGTHLAGFRAALTRTINNYIEKEGLAKKAKVSLTGDDAREGLTAVLSVKVPDPKFS 334 (756)
T ss_pred EEcC--CCceeEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHhHHhhceEEEEEEecCCCccc
Confidence 4322 112356899999875532 345555553332 11121 13467899998855444
No 27
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.42 E-value=1.2e-06 Score=96.84 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=73.9
Q ss_pred CCCcchhHHHHhhhcc------eEEEeecCCCCCeEEEEEe------CCeecc-ccccccCCCCcEEEEcccccccHHHH
Q 008397 1 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSYR------DGVMES-EPKACAAVKGTQIMVENLFYNMIARR 67 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~------l~I~Tk~~~~~~g~~~~~~------~G~~~~-~~~~~a~~~GTtV~V~dLFyN~PvRr 67 (567)
.|++|.+|++...+++ ++|+|++.+...+|.+.+. .|++.. +..+....+||+|+|+ ||.|++.|
T Consensus 111 ~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~~- 188 (535)
T PRK04184 111 RGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYRA- 188 (535)
T ss_pred CCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChhh-
Confidence 4899999999888874 7899999888778888873 466552 1234567899999999 89998854
Q ss_pred HhhcCchHHHHHHHHHHHhhhhccCceEEEEEECC
Q 008397 68 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 102 (567)
Q Consensus 68 k~lks~~~e~~~I~~~v~~yAl~~p~V~F~l~~~~ 102 (567)
.++|.+.|.++|++||+++|+|.+.+
T Consensus 189 ---------~~~I~e~i~r~Al~nP~~~~~l~~~~ 214 (535)
T PRK04184 189 ---------KQRIYEYLKRTAIVNPHARITFKDPD 214 (535)
T ss_pred ---------HHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 56899999999999999999999643
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=93.01 E-value=1 Score=51.76 Aligned_cols=187 Identities=11% Similarity=0.130 Sum_probs=107.4
Q ss_pred CCcchhHHHHhhhcc-eEEEeecCCCCCeEEEEEeCC-eeccccc--cccCCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 2 GFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDG-VMESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 2 GFRGEALaSIs~VS~-l~I~Tk~~~~~~g~~~~~~~G-~~~~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
|+.|..++...++|. ++|.++..+ .-|+..|.+| ..+..++ ......||+|+.. |-...| ....-.+
T Consensus 113 GlhGvG~svvNAlS~~~~V~v~r~g--k~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F~------PD~~iF-~~~~f~~ 183 (637)
T TIGR01058 113 GLHGVGASVVNALSSWLEVTVKRDG--QIYQQRFENGGKIVQSLKKIGTTKKTGTLVHFH------PDPTIF-KTTQFNS 183 (637)
T ss_pred CcccccccccceeeceEEEEEEECC--EEEEEEEecCCcCcCCcccccCCCCCceEEEEE------eCHHHc-CCCccCH
Confidence 889999999999996 999998543 4678889875 6553222 2334689999965 444444 2333455
Q ss_pred HHHHHHHHhhhhccCceEEEEEECCe-eeeEEEcCCCCCHHHHHHHHhChh-hhhccccccccccCCCCCcceEEEEEEe
Q 008397 78 TKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS-VASNLVQLEASEYNDSSSFVFKMDGYVS 155 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p~V~F~l~~~~~-~~~~l~t~~~~s~~~~i~~i~G~~-~~~~l~~v~~~~~~~~~~~~~~v~G~is 155 (567)
..|.+.+..+|..+|++.+++..... ....|...+ .+.+-+..+-... .....+.++.+. .++.++.-+.
T Consensus 184 d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~~~--Gl~~yv~~l~~~k~~l~~~i~~~~~~------~~~~vevAl~ 255 (637)
T TIGR01058 184 NIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFYEN--GLVDFVDYINETKETLSQVTYFEGEK------NGIEVEVAFQ 255 (637)
T ss_pred HHHHHHHHHHhccCCCcEEEEEecCCCceEEEEcCc--CHHHHHHHhcCCCCcCCccEEEEEEE------CCcEEEEEEE
Confidence 67999999999999999999986421 122344433 2444443322111 000111122221 2344555444
Q ss_pred CCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhcc-CCCC-----------CCcEEEEEEEcC
Q 008397 156 NSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAAT-FPKA-----------SKPFIYMSIVLP 207 (567)
Q Consensus 156 ~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~~-lp~~-----------~~P~~~L~i~i~ 207 (567)
-.+. ....++-|||+-+-..- .|.++|+...+.. +.++ ..=++++++.++
T Consensus 256 ~~~~--~~e~~~SFvN~I~T~~GGTHv~g~~~aLtr~in~~~~~~~~lK~~~~~i~~~diregL~~vIsvki~ 326 (637)
T TIGR01058 256 FNDG--DSENILSFANSVKTKEGGTHENGFKLAITDVINSYARKYNLLKEKDKNLEGSDIREGLSAIISVRIP 326 (637)
T ss_pred EcCC--CCeEEEEeECCccCCCCCcHHHHHHHHHHHHHHHHHHHhchhccccccCChhhHhhccEEEEEEecC
Confidence 3221 12358999999886542 3555555543321 1011 123677888886
No 29
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=84.57 E-value=3.6 Score=44.91 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=60.9
Q ss_pred CCcchhHHHHhhhcc-eEEEeecCCCCCeEEEEEe------CCeeccc--cccccCCCCcEEEEccccc-ccHHHHHhhc
Q 008397 2 GFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYR------DGVMESE--PKACAAVKGTQIMVENLFY-NMIARRKTLQ 71 (567)
Q Consensus 2 GFRGEALaSIs~VS~-l~I~Tk~~~~~~g~~~~~~------~G~~~~~--~~~~a~~~GTtV~V~dLFy-N~PvRrk~lk 71 (567)
|--|-.|.|-..-.+ +.|.|+|.++..+|..... .+.++.. .+...+.+||+|.++ |. |...+++
T Consensus 115 Gis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~--~~~~~~~~~~--- 189 (538)
T COG1389 115 GISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE--LKGVWYRAKR--- 189 (538)
T ss_pred cHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE--ecccchhhcc---
Confidence 445667888777765 9999999998888866542 2444421 234456799999986 22 2222221
Q ss_pred CchHHHHHHHHHHHhhhhccCceEEEEEE
Q 008397 72 NSSDDYTKIVDLLSRMAIHHTNVSFSCRK 100 (567)
Q Consensus 72 s~~~e~~~I~~~v~~yAl~~p~V~F~l~~ 100 (567)
+.|.+.+.+-|+.+|+-.++|..
T Consensus 190 ------qgi~eYlkrtaiinPhA~I~l~d 212 (538)
T COG1389 190 ------QGIYEYLKRTAIINPHARIVLKD 212 (538)
T ss_pred ------cCHHHHHHHHhhcCCceEEEEEC
Confidence 12778899999999999999987
No 30
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=82.01 E-value=14 Score=42.16 Aligned_cols=203 Identities=18% Similarity=0.240 Sum_probs=107.0
Q ss_pred chhHHHHhhhc-ceEEEeecCCCCCeEEEEEeC-Ceecccccccc-CC-CCcEEEEcccccccHHHHHhhcCch---HHH
Q 008397 5 GEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKACA-AV-KGTQIMVENLFYNMIARRKTLQNSS---DDY 77 (567)
Q Consensus 5 GEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~-G~~~~~~~~~a-~~-~GTtV~V~dLFyN~PvRrk~lks~~---~e~ 77 (567)
|--+.|-=-|| +|+|+||..++..+|...-.| |.-. ..++. .+ +||+|+.. |+-.. .+-
T Consensus 123 GVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~yt--v~~~~~~~~~GT~I~L~------------Lk~~e~efl~~ 188 (623)
T COG0326 123 GVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYT--VEDIDKEPRRGTEITLH------------LKEEEDEFLEE 188 (623)
T ss_pred cchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceE--EeeccCCCCCCcEEEEE------------ECCchHHHhhh
Confidence 33445555677 699999999999998554432 3322 23332 23 59999975 33222 234
Q ss_pred HHHHHHHHhhhhccC-ceEEEEEECC-----------eeeeEEEcCCCCCHHHHHHHHhCh---hhhhccccccccccCC
Q 008397 78 TKIVDLLSRMAIHHT-NVSFSCRKHG-----------AARADVHSIATSSRLDSIRTVYGV---SVASNLVQLEASEYND 142 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p-~V~F~l~~~~-----------~~~~~l~t~~~~s~~~~i~~i~G~---~~~~~l~~v~~~~~~~ 142 (567)
.+|.++|.+|+-|-+ -|.+...... +.+..|.-++..=..+.-...|-. ....-|.-+....
T Consensus 189 ~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~--- 265 (623)
T COG0326 189 WRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKV--- 265 (623)
T ss_pred hHHHHHHHHHhcccccceEEeeeccccccchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEeccc---
Confidence 589999999998765 4555543311 112233222211111222222211 1111122222221
Q ss_pred CCCcceEEEEEEeCCC---CC--C--CCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeecc
Q 008397 143 SSSFVFKMDGYVSNSN---YV--A--KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNV 215 (567)
Q Consensus 143 ~~~~~~~v~G~is~~~---~~--~--~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNv 215 (567)
+ +.+...+++--|. +. . .|..+-+|||+-.|.+.. .+++|. | ..|+.=.|+.+.+-.||
T Consensus 266 E--G~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd~---------~~llP~--y-l~Fv~GvIDS~DLpLNv 331 (623)
T COG0326 266 E--GRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDDA---------EDLLPN--Y-LRFVRGVIDSEDLPLNV 331 (623)
T ss_pred c--cceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCCh---------hhhhhH--H-HhhheeeeecCCCCccc
Confidence 1 4466666654442 11 1 245678999999998642 234543 2 22334445555666666
Q ss_pred CCCCCeEecCChHHHHHHHHHHHHHHHh
Q 008397 216 HPTKREVSLLNQELIVEKIQSAVELKLR 243 (567)
Q Consensus 216 hPtK~eV~F~~e~~I~~~i~~~i~~~L~ 243 (567)
. ||+ +.++.++..|++++.+.+.
T Consensus 332 S---RE~--LQ~n~~l~~Irk~l~kkvl 354 (623)
T COG0326 332 S---REI--LQQNRILAAIRKALTKKVL 354 (623)
T ss_pred C---HHH--HccCHHHHHHHHHHHHHHH
Confidence 4 454 4566677777777665553
No 31
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=66.54 E-value=3.4 Score=47.11 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=64.3
Q ss_pred ccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcccCeEecCCCcchhHHHhhhccccccccccCcCch
Q 008397 358 VRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDD 437 (567)
Q Consensus 358 ~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f~n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~ 437 (567)
+..+..+-|||..||-+=-.++.-++||||+.|+..-|..-+.|- ..-.|.+|+.+. + -|
T Consensus 910 i~~~qvlqqvDkkyi~~v~~~~~~~~~qha~dek~~~q~~~~k~l--~~s~li~~l~~k------v--lp---------- 969 (1142)
T KOG1977|consen 910 IHSMQVLQQVDKKYIACVMSTKTEENGQHASDEKQQAQGSGRKKL--LSSTLIPPLEIK------V--LP---------- 969 (1142)
T ss_pred hhhHHHHHhhchhheeeeeeccccccccchhHHHHHhhhhccccc--cccccccceeEE------e--ch----------
Confidence 336678899999999999999999999999999999999887763 345667777766 2 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcceEEe
Q 008397 438 LKEKIAEMNTELLKQKAEMLEEYFCVKID 466 (567)
Q Consensus 438 ~~~~~~~~~~~~L~e~~emL~eyFgi~Ie 466 (567)
....+|+.+.+.+++ +|.++.
T Consensus 970 -------m~~~ll~~Y~~~~~d-~gw~~~ 990 (1142)
T KOG1977|consen 970 -------MQRRLLWCYHKNLED-LGWEFV 990 (1142)
T ss_pred -------hhHHHHHHHHHHhhh-hceEEe
Confidence 156789999999999 588853
No 32
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=60.40 E-value=15 Score=43.65 Aligned_cols=95 Identities=15% Similarity=0.305 Sum_probs=61.4
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccccc--ccc-CCCCcEEEEc-c---cccccHHHHHhhc--
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACA-AVKGTQIMVE-N---LFYNMIARRKTLQ-- 71 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~--~~a-~~~GTtV~V~-d---LFyN~PvRrk~lk-- 71 (567)
|-.|--++..-+.| .++|.++..+. -|...|.+|..+...+ .+. ...||+|+.. | +|...- ....
T Consensus 248 GLHGVG~SVVNALS~~l~VeV~RdGK--~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~---~~~~~~ 322 (903)
T PTZ00109 248 GLHGVGLSVVNALSSFLKVDVFKGGK--IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHH---QHTETE 322 (903)
T ss_pred cCCCcceeeeeeccCeEEEEEEECCE--EEEEEeCCCcccCCccccCCcCCCCceEEEEEeCcchhcCccc---cccccc
Confidence 33455555555666 58888887654 6899999998764322 222 4589999964 2 442200 0000
Q ss_pred -----CchHHHHHHHHHHHhhhhccCceEEEEEEC
Q 008397 72 -----NSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 101 (567)
Q Consensus 72 -----s~~~e~~~I~~~v~~yAl~~p~V~F~l~~~ 101 (567)
...-.+..|.+.+..+|..+|++.+.|...
T Consensus 323 ~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~L~De 357 (903)
T PTZ00109 323 EEEGCKNGFNLDLIKNRIHELSYLNPGLTFYLVDE 357 (903)
T ss_pred cccccccccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 000246789999999999999999999863
No 33
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=52.45 E-value=13 Score=33.81 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCCcchh--HHHHhhhcceEEEeecCCCCCeEEEEEe
Q 008397 1 MGFRGEA--LASMTYVGHVTVTTITKGHLHGYRVSYR 35 (567)
Q Consensus 1 ~GFRGEA--LaSIs~VS~l~I~Tk~~~~~~g~~~~~~ 35 (567)
+|++|.. +|+++...+++|+|++.+...+|.+.+.
T Consensus 70 ~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 70 IGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred CCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 3677665 7778877889999999999999888775
No 34
>PRK14083 HSP90 family protein; Provisional
Probab=48.33 E-value=88 Score=36.02 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=106.4
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEe-CCeecccc-ccccCCCCcEEEEcccccccHHHHHhhcCchHHHH
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYR-DGVMESEP-KACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYT 78 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~-~G~~~~~~-~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~ 78 (567)
|..|--..|.=.|| +|+|+||..++..+|...-. +|...-+. .......||+|++.-- |--+.++ +-.
T Consensus 105 G~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l~----~d~~~~~-----~~~ 175 (601)
T PRK14083 105 GQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRPR----PDAEEWL-----ERE 175 (601)
T ss_pred cccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEec----Cchhhhc-----cHH
Confidence 66676677777777 59999999865667655443 34432111 1224479999999741 1111222 345
Q ss_pred HHHHHHHhhhhccC-ceEEEEE--ECCeeeeEEEcCCC-CC-----HHHHHHHHhChhhhhccccccccccCCCCCcceE
Q 008397 79 KIVDLLSRMAIHHT-NVSFSCR--KHGAARADVHSIAT-SS-----RLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 149 (567)
Q Consensus 79 ~I~~~v~~yAl~~p-~V~F~l~--~~~~~~~~l~t~~~-~s-----~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~ 149 (567)
+|.+++.+|+-.-| -|.+.-. .-++....|.-++. -+ +.+-.+.+||. .-|.-+.... .+..
T Consensus 176 ~i~~li~~ys~~i~~pI~l~~~~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~~---~Pl~~ih~~~------e~~~ 246 (601)
T PRK14083 176 TVEELAKKYGSLLPVPIRVEGEKGGVNETPPPWTRDYPDPETRREALLAYGEELLGF---TPLDVIPLDV------PSGG 246 (601)
T ss_pred HHHHHHHHHhccCCCCcccCCceeeecCCCCCccCCccccCccHHHHHHHHHHhcCC---Cchheeeecc------cchh
Confidence 78888999975443 3333210 01111223322221 11 45556667761 1233333332 1122
Q ss_pred EEEEEe-CCCC--CCCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCC
Q 008397 150 MDGYVS-NSNY--VAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 226 (567)
Q Consensus 150 v~G~is-~~~~--~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~ 226 (567)
..|.+= .|.. ...+...-+|+|+=+|.... ..++|. | ..++.=.++.+.+-.||. ||. +.
T Consensus 247 ~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d~~---------~~lLP~--w-l~FvrGVVDS~DLpLNvS---RE~--LQ 309 (601)
T PRK14083 247 LEGVAYVLPYAVSPAARRKHRVYLKRMLLSEEA---------ENLLPD--W-AFFVRCVVNTDELRPTAS---REA--LY 309 (601)
T ss_pred heEEEEecCCCCCccccCceEEEeeeeEeecch---------hhhhHH--H-HHHheeeeecCCCCCccC---HHH--Hc
Confidence 244332 2221 12234457999999887642 234543 2 234556677777777775 443 33
Q ss_pred hHHHHHHHHHHHHHHH
Q 008397 227 QELIVEKIQSAVELKL 242 (567)
Q Consensus 227 e~~I~~~i~~~i~~~L 242 (567)
++.++..|++.|.+.+
T Consensus 310 ~~~~l~~ir~~i~kki 325 (601)
T PRK14083 310 EDDALAAVREELGEAI 325 (601)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 5555566665554444
No 35
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=48.10 E-value=38 Score=38.67 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=98.6
Q ss_pred hhc-ceEEEeecCCCCCeEEEEEeCCeecccccccc----CCCCcEEEEcccccccHHHHHhhcCchHHHHHHHHHHHhh
Q 008397 13 YVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKACA----AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRM 87 (567)
Q Consensus 13 ~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a----~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I~~~v~~y 87 (567)
+.| +|+++++..+ .-|+..|++|..+.+.+..+ ...||+|+.. -=|. .+.+..-.+..+...+..+
T Consensus 126 ALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~----PD~~---iF~~~~f~~~~l~~Rlrel 196 (635)
T COG0187 126 ALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFK----PDPE---IFGETEFDYEILKRRLREL 196 (635)
T ss_pred cccceEEEEEEECC--EEEEEEEeCCCcCCCceecccCCCCCCccEEEEE----cChH---hcCCcccCHHHHHHHHHHH
Confidence 345 5888888763 36888899988763333222 2579999954 3332 2333566788999999999
Q ss_pred hhccCceEEEEEECCe--eeeEEEcCCCCCHHHHHHHHhChhhhhcccc-c-cccccCCCCCcceEEEEEEeCCCCCCCC
Q 008397 88 AIHHTNVSFSCRKHGA--ARADVHSIATSSRLDSIRTVYGVSVASNLVQ-L-EASEYNDSSSFVFKMDGYVSNSNYVAKK 163 (567)
Q Consensus 88 Al~~p~V~F~l~~~~~--~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~-v-~~~~~~~~~~~~~~v~G~is~~~~~~~k 163 (567)
|-.+++|.+.+...-. ....|+..++ +.+-+..+-... .-|.+ + .... +. .++.++--+.-.+. -.
T Consensus 197 A~L~~gl~I~l~d~r~~~~~~~~~y~~G--l~~yv~~l~~~k--~~l~~~~~~~~~--~~--~~~~vEvA~q~~d~--~~ 266 (635)
T COG0187 197 AFLNKGVKITLTDERTGEEKKEFHYEGG--LKDYVEYLNKGK--TPLHEEIFYFNG--EK--DGIAVEVALQWNDG--YS 266 (635)
T ss_pred hccCCCCEEEEEeccCCcccceeecccH--HHHHHHHHhcCC--CccccCceeccc--Cc--cceEEEEEEEEecC--Cc
Confidence 9999999998876321 1112544432 333333332211 11111 1 1111 11 23434433332221 13
Q ss_pred ceEEEEEcCeEeCCc---------hHHHHHHHHhhc--cCCCC--------CCcEEEEEEEcCCC
Q 008397 164 TTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFPKA--------SKPFIYMSIVLPPE 209 (567)
Q Consensus 164 ~~q~lFIN~R~V~~~---------~l~kaI~~~y~~--~lp~~--------~~P~~~L~i~i~p~ 209 (567)
..++-|+|+=+=..- .|.++|++.... .++++ ..-.++|++.+|-.
T Consensus 267 e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~k~~~l~g~Diregl~aviSvki~~P 331 (635)
T COG0187 267 ENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLLKEGDLTGDDIREGLTAVISVKIPDP 331 (635)
T ss_pred eEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhCcCcccCCCHHHHhhccEEEEEEECCCC
Confidence 467899999886642 455566553332 22221 23478899999843
No 36
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=39.88 E-value=65 Score=37.05 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=55.8
Q ss_pred chhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeecccc-ccccCCCCcEEEEcccccccHHHHHhh-cCc-hHHHHHH
Q 008397 5 GEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEP-KACAAVKGTQIMVENLFYNMIARRKTL-QNS-SDDYTKI 80 (567)
Q Consensus 5 GEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~-~~~a~~~GTtV~V~dLFyN~PvRrk~l-ks~-~~e~~~I 80 (567)
|--++..-+.| +++|+++. ....|+..|.+|...... .......||+|+.. |--..|- ... ...+..|
T Consensus 131 GVG~svvNaLS~~~~V~v~~--~~~~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~------PD~~iF~~~~~~~~~~~~l 202 (602)
T PHA02569 131 GVGSSLTNFFSVLFIGETCD--GKNEVTVNCSNGAENISWSTKPGKGKGTSVTFI------PDFSHFEVNGLDQQYLDII 202 (602)
T ss_pred CccceeeeccchhhheEEEc--CCEEEEEEecCCcccCCcccCCCCCCccEEEEE------ECHHHhCCCccCccHHHHH
Confidence 33333444556 47777643 334589999999754221 12223589999964 4433331 111 1236788
Q ss_pred HHHHHhhhhccCceEEEEEEC
Q 008397 81 VDLLSRMAIHHTNVSFSCRKH 101 (567)
Q Consensus 81 ~~~v~~yAl~~p~V~F~l~~~ 101 (567)
.+.+..+|-.+|++++.|...
T Consensus 203 ~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 203 LDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred HHHHHHHhcCCCCCEEEEEec
Confidence 999999999999999999753
No 37
>PTZ00130 heat shock protein 90; Provisional
Probab=38.76 E-value=57 Score=38.69 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=47.8
Q ss_pred chhHHHHhhhc-ceEEEeecCCCCCeEEEEEeC-Ceecccc--ccccCCCCcEEEEcccccccHHHHHhhcCchH---HH
Q 008397 5 GEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEP--KACAAVKGTQIMVENLFYNMIARRKTLQNSSD---DY 77 (567)
Q Consensus 5 GEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~-G~~~~~~--~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~---e~ 77 (567)
|--..|.=.|| +|+|+||..+ ..||...-.+ |...-.. +.....+||+|++. |+.... +-
T Consensus 184 GVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~Lh------------Lked~~efl~~ 250 (814)
T PTZ00130 184 GVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTRISLH------------LKEDATNLMND 250 (814)
T ss_pred ccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcEEEEE------------ECCchhhhccH
Confidence 44556666777 5999999876 4577765543 3332111 11123699999985 222222 34
Q ss_pred HHHHHHHHhhhhccC-ceEE
Q 008397 78 TKIVDLLSRMAIHHT-NVSF 96 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p-~V~F 96 (567)
.+|.++|.+|+-+-+ -|.+
T Consensus 251 ~~ik~likkYS~fI~~PI~l 270 (814)
T PTZ00130 251 KKLVDLISKYSQFIQYPIYL 270 (814)
T ss_pred HHHHHHHHHhhccCCCCEEE
Confidence 589999999996543 3444
No 38
>PLN03128 DNA topoisomerase 2; Provisional
Probab=38.47 E-value=7.5e+02 Score=30.91 Aligned_cols=176 Identities=12% Similarity=0.102 Sum_probs=92.4
Q ss_pred hc-ceEEEeecCCCCCeEEEEEeCCeeccc-c--cccc-CCCCcEEEEcccccccHHHHHh-hcCc-hHHHHHHHHHHHh
Q 008397 14 VG-HVTVTTITKGHLHGYRVSYRDGVMESE-P--KACA-AVKGTQIMVENLFYNMIARRKT-LQNS-SDDYTKIVDLLSR 86 (567)
Q Consensus 14 VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~-~--~~~a-~~~GTtV~V~dLFyN~PvRrk~-lks~-~~e~~~I~~~v~~ 86 (567)
.| .++|.++...+..-|+..|.+|..... + ..+. ...||+|+.. |--..| ...- ...+..+..-+..
T Consensus 145 LS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~------PD~~iF~~~~fd~d~~~~l~kRl~e 218 (1135)
T PLN03128 145 FSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITFK------PDLAKFNMTRLDEDVVALMSKRVYD 218 (1135)
T ss_pred ecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEEE------ECHHHcCCCccChHHHHHHHHHHHH
Confidence 35 589999865555689999999965421 1 2222 3589999965 322222 1111 2234556667777
Q ss_pred hh-hccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCCCCCce
Q 008397 87 MA-IHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTT 165 (567)
Q Consensus 87 yA-l~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~~k~~ 165 (567)
+| ..+|+|++.|.... . ....+.+-+....+..-.....++-++. .. ..+.|---++.. ...
T Consensus 219 lAa~Ln~GlkI~Lnder---~-----~~~G~~dyv~~~~~~~~~~~~~~i~~~~--~~--~~~eva~~~s~~-----~~~ 281 (1135)
T PLN03128 219 IAGCLGKKLKVELNGKK---L-----PVKSFQDYVGLYLGPNSREDPLPRIYEK--VN--DRWEVCVSLSDG-----SFQ 281 (1135)
T ss_pred HHHhCCCCcEEEEecCC---C-----CCCCHHHHHHHHhcCCCCCCCCCeEEEe--cC--ceEEEEEEEcCC-----Cce
Confidence 77 77899999996431 1 1134555444333221000011222222 11 233333333321 245
Q ss_pred EEEEEcCeEeCC-----chHHHHHHHHhhccCC---C----------CCCcEEEEEEEcCCCcee
Q 008397 166 MVLFVNDRLVEC-----APLKRAVEIVYAATFP---K----------ASKPFIYMSIVLPPEHVD 212 (567)
Q Consensus 166 q~lFIN~R~V~~-----~~l~kaI~~~y~~~lp---~----------~~~P~~~L~i~i~p~~vD 212 (567)
|+-|||+=+-.. ..+.++|.+....++- + ..+=++++++.++--..|
T Consensus 282 ~~SFVN~I~T~~GGTHv~g~~~~i~~~i~~~~~kk~K~~~~l~~~diregL~~vIs~ki~nP~Fe 346 (1135)
T PLN03128 282 QVSFVNSIATIKGGTHVDYVADQIVKHIQEKVKKKNKNATHVKPFQIKNHLWVFVNCLIENPTFD 346 (1135)
T ss_pred EEEEECcEecCCCCchHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHhCcEEEEEEecCCCccc
Confidence 899999987553 2456666555444321 1 113467888887754443
No 39
>PRK13669 hypothetical protein; Provisional
Probab=37.28 E-value=30 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=28.9
Q ss_pred cceEEEEEEeCCCCCCCCceEEEEEcCeEeCCchHHHHHHHHhhcc
Q 008397 146 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAAT 191 (567)
Q Consensus 146 ~~~~v~G~is~~~~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~ 191 (567)
.++.-.|.+|.-+.-+ ..-|-+||||+|..+.-...++++|...
T Consensus 29 ~dVie~gCls~CG~C~--~~~FAlVng~~V~a~t~eeL~~kI~~~i 72 (78)
T PRK13669 29 LDVLEYGCLGYCGICS--EGLFALVNGEVVEGETPEELVENIYAHL 72 (78)
T ss_pred ceEEEcchhhhCcCcc--cCceEEECCeEeecCCHHHHHHHHHHHH
Confidence 3455566666544332 3358999999999886666666666644
No 40
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=33.67 E-value=50 Score=38.64 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=43.5
Q ss_pred HHHhhhc-ceEEEeecCCCCCeEEEEEeC-Ceeccccccc-cCCCCcEEEEcccccccHHHHHhhcCchH---HHHHHHH
Q 008397 9 ASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKAC-AAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVD 82 (567)
Q Consensus 9 aSIs~VS-~l~I~Tk~~~~~~g~~~~~~~-G~~~~~~~~~-a~~~GTtV~V~dLFyN~PvRrk~lks~~~---e~~~I~~ 82 (567)
.|.=.|| +|+|+||..+. .||.....+ |...-...+. ....||+|++. |+.... +-.+|.+
T Consensus 124 yS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~------------Lk~d~~ef~~~~~i~~ 190 (701)
T PTZ00272 124 YSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITLH------------LKEDQMEYLEPRRLKE 190 (701)
T ss_pred EEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEEE------------ECCchHHhccHHHHHH
Confidence 3444455 59999998764 588777654 3332111121 23699999985 332222 2348999
Q ss_pred HHHhhhhcc
Q 008397 83 LLSRMAIHH 91 (567)
Q Consensus 83 ~v~~yAl~~ 91 (567)
+|.+|+=.=
T Consensus 191 li~kYs~fi 199 (701)
T PTZ00272 191 LIKKHSEFI 199 (701)
T ss_pred HHHHhcccc
Confidence 999999643
No 41
>PLN03237 DNA topoisomerase 2; Provisional
Probab=32.91 E-value=1e+03 Score=30.64 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=47.6
Q ss_pred hhc-ceEEEeecCCCCCeEEEEEeC--Ceeccccc--ccc-CCCCcEEEEcccccccHHHHHhhcCc---hHHHHHHHHH
Q 008397 13 YVG-HVTVTTITKGHLHGYRVSYRD--GVMESEPK--ACA-AVKGTQIMVENLFYNMIARRKTLQNS---SDDYTKIVDL 83 (567)
Q Consensus 13 ~VS-~l~I~Tk~~~~~~g~~~~~~~--G~~~~~~~--~~a-~~~GTtV~V~dLFyN~PvRrk~lks~---~~e~~~I~~~ 83 (567)
+.| .++|+++......-|+..|.+ |+... +. .+. ...||+|+.. |--..| ... .+.+..+..-
T Consensus 169 aLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~-p~i~~~~~~~~GT~VtF~------PD~eiF-~~~~fd~D~l~~~~rR 240 (1465)
T PLN03237 169 IFSTEFVIETADGKRQKKYKQVFSNNMGKKSE-PVITKCKKSENWTKVTFK------PDLAKF-NMTHLEDDVVALMKKR 240 (1465)
T ss_pred cccCeeEEEEEECCCCeEEEEEEeCCCCccCC-ceeccCCCCCCceEEEEE------ECHHHh-CCceEcHHHHHHHHHH
Confidence 345 588888733334568889987 77652 21 221 3689999854 333333 212 1222333455
Q ss_pred HHhhh-hccCceEEEEEEC
Q 008397 84 LSRMA-IHHTNVSFSCRKH 101 (567)
Q Consensus 84 v~~yA-l~~p~V~F~l~~~ 101 (567)
+..+| ..+++|.+.|...
T Consensus 241 lrdLAa~LnkGlkI~Lnde 259 (1465)
T PLN03237 241 VVDIAGCLGKTVKVELNGK 259 (1465)
T ss_pred HHHHHhccCCCcEEEEEec
Confidence 55666 7789999999743
No 42
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=32.72 E-value=1e+02 Score=38.90 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=53.7
Q ss_pred hhc-ceEEEeecCCCCCeEEEEEeCC--eecccc--ccccC-CCCcEEEEcccccccHHHHHh-hcCchHH-HHHHHHHH
Q 008397 13 YVG-HVTVTTITKGHLHGYRVSYRDG--VMESEP--KACAA-VKGTQIMVENLFYNMIARRKT-LQNSSDD-YTKIVDLL 84 (567)
Q Consensus 13 ~VS-~l~I~Tk~~~~~~g~~~~~~~G--~~~~~~--~~~a~-~~GTtV~V~dLFyN~PvRrk~-lks~~~e-~~~I~~~v 84 (567)
+.| .++|+++......-|+..|.+| +.. .+ ..+.. ..||+|+.. |--..| ......+ .+-|...+
T Consensus 152 alS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~-~p~i~~~~~~~~GT~VtF~------PD~~iF~~~~fd~d~~~ll~~Rl 224 (1388)
T PTZ00108 152 IFSTKFTVECVDSKSGKKFKMTWTDNMSKKS-EPRITSYDGKKDYTKVTFY------PDYAKFGMTEFDDDMLRLLKKRV 224 (1388)
T ss_pred cccceEEEEEEECCCCCEEEEEecCCCcCCC-CCccCCCCCCCCceEEEEE------eCHHHcCCCccChHHHHHHHHHH
Confidence 345 5999999876666799999988 333 22 23323 689999954 333333 1111222 23488899
Q ss_pred HhhhhccCceEEEEEE
Q 008397 85 SRMAIHHTNVSFSCRK 100 (567)
Q Consensus 85 ~~yAl~~p~V~F~l~~ 100 (567)
..+|-.+|+|.+.|..
T Consensus 225 ~dlA~ln~GLkI~lnd 240 (1388)
T PTZ00108 225 YDLAGCFGKLKVYLNG 240 (1388)
T ss_pred HHHhcCCCCcEEEEeC
Confidence 9999999999999863
No 43
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=32.15 E-value=65 Score=36.67 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCe-eccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHH
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTK 79 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~-~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~ 79 (567)
|.-|-...|-=-|| +|+|+||..++. +|.....+|. ......+ +...||.|+.. +|.....-.|-.+
T Consensus 148 GQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~~~-~~~rGTki~l~---------lKe~~~ey~ee~r 216 (656)
T KOG0019|consen 148 GQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAEAS-GLRTGTKIVIH---------LKEGDCEFLEEKR 216 (656)
T ss_pred hhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEeecc-CccccceEEee---------ehhhhhhhccHhH
Confidence 44566666767787 699999999887 8777776443 3211122 26889999864 2221113345679
Q ss_pred HHHHHHhhhh
Q 008397 80 IVDLLSRMAI 89 (567)
Q Consensus 80 I~~~v~~yAl 89 (567)
|+++|.+|+.
T Consensus 217 ikeiVKK~S~ 226 (656)
T KOG0019|consen 217 IKEVVKKYSN 226 (656)
T ss_pred HHHHHhhccc
Confidence 9999999985
No 44
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.62 E-value=43 Score=27.85 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.3
Q ss_pred cceEEEEEEeCCCCCCCCceEEEEEcCeEeCCchHHHHHHHHhhcc
Q 008397 146 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAAT 191 (567)
Q Consensus 146 ~~~~v~G~is~~~~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~ 191 (567)
.++.-.|.+|.-+.- +..-|-+||||+|..+.=...+++++...
T Consensus 29 ~~Vie~gCl~~Cg~C--~~~pFAlVnG~~V~A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 29 IDVIEYGCLSYCGPC--AKKPFALVNGEIVAAETAEELLEKIKEKI 72 (78)
T ss_pred ccEEEcChhhhCcCC--CCCccEEECCEEEecCCHHHHHHHHHHHH
Confidence 355567777765433 23458999999999876666666665543
No 45
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=27.02 E-value=2.1e+02 Score=26.99 Aligned_cols=99 Identities=17% Similarity=0.300 Sum_probs=64.8
Q ss_pred ccCeEecCCCcchhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEecCCC-------ccccC
Q 008397 403 HFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN-------LSRLP 475 (567)
Q Consensus 403 n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~-------L~siP 475 (567)
.+....|-.|..=+.++..|+... +.-+.+-.+.++++.+++.-|+.-..-|.+-||..++ +|. ..+++
T Consensus 47 kiEpMVLrsPPTgESivryALPIP---ssktkell~~de~irkitkhLkmvVstLEeTyG~~~~-~gek~~~kpE~ee~~ 122 (170)
T PF15368_consen 47 KIEPMVLRSPPTGESIVRYALPIP---SSKTKELLSEDEMIRKITKHLKMVVSTLEETYGLDIQ-NGEKPIVKPEQEELS 122 (170)
T ss_pred ccccccccCCCCchhHHHhhcCCC---chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcccc-cccccccCCcccccc
Confidence 355678888888888998888532 3444555667888888888888888889999999975 443 44554
Q ss_pred cccCCCCCCCCCHHHHHH---HhcCCCCC--chHHHHHHHH
Q 008397 476 IILDQYTPDMDRIPEFVL---CLGNDVDW--EDEKCCFQAI 511 (567)
Q Consensus 476 ~ll~~y~P~~~~Lp~fl~---~L~~~v~w--~~E~~cf~~i 511 (567)
+-.+ +.+-.||+ .+|.+..- .+|...++++
T Consensus 123 lsvg------dD~~SFL~~CS~faaQLEeAvKEE~niLeSL 157 (170)
T PF15368_consen 123 LSVG------DDMNSFLLCCSQFAAQLEEAVKEERNILESL 157 (170)
T ss_pred cccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45666654 45555432 3454444443
No 46
>PF14122 YokU: YokU-like protein
Probab=23.47 E-value=33 Score=28.98 Aligned_cols=25 Identities=12% Similarity=0.432 Sum_probs=21.7
Q ss_pred ECCeEEEEechhHHHHHHHHHHHHH
Q 008397 376 HNTHMYLANVVSLSKELMYQLVLRR 400 (567)
Q Consensus 376 ~~~~LyLiDqhaa~eri~Yq~~l~~ 400 (567)
-++.|+|||...+-+.+-||.++..
T Consensus 54 IEdql~Lidtk~l~~sity~~LM~~ 78 (87)
T PF14122_consen 54 IEDQLFLIDTKKLPNSITYEELMNQ 78 (87)
T ss_pred HhhheEEEecccCCccccHHHHhhc
Confidence 3568999999999999999998854
Done!