Query 008397
Match_columns 567
No_of_seqs 253 out of 1301
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 01:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na3_A DNA mismatch repair pro 100.0 4.6E-60 1.6E-64 493.7 23.8 251 1-255 98-348 (348)
2 3h4l_A DNA mismatch repair pro 100.0 4.9E-54 1.7E-58 451.9 25.4 241 1-246 95-362 (367)
3 1h7s_A PMS1 protein homolog 2; 100.0 4.8E-50 1.7E-54 422.7 26.7 241 1-243 104-364 (365)
4 3rbn_A DNA mismatch repair pro 100.0 1.4E-50 4.8E-55 405.5 15.2 192 333-526 33-224 (284)
5 1b63_A MUTL; DNA mismatch repa 100.0 3.2E-48 1.1E-52 405.0 25.2 234 1-242 94-332 (333)
6 3kdg_A DNA mismatch repair pro 99.8 6.5E-19 2.2E-23 170.3 9.2 140 356-523 4-149 (197)
7 3ncv_A DNA mismatch repair pro 99.7 1.7E-18 5.8E-23 169.9 9.6 141 356-523 25-172 (220)
8 3cwv_A DNA gyrase, B subunit, 99.7 5.4E-17 1.9E-21 170.8 19.2 222 1-245 96-347 (369)
9 1s16_A Topoisomerase IV subuni 99.7 7.9E-17 2.7E-21 170.9 17.8 222 1-243 109-359 (390)
10 1x9z_A DNA mismatch repair pro 99.6 2.9E-16 9.8E-21 150.7 10.0 129 358-519 6-138 (188)
11 1ei1_A DNA gyrase B, GYRB; ATP 99.6 9.5E-16 3.3E-20 162.5 13.3 192 1-211 112-331 (391)
12 1y4s_A Chaperone protein HTPG; 99.6 3.1E-15 1.1E-19 164.5 7.7 203 1-241 120-355 (559)
13 1kij_A DNA gyrase subunit B; t 99.5 6.8E-14 2.3E-18 148.5 17.1 191 2-211 111-330 (390)
14 3fv5_A DNA topoisomerase 4 sub 99.5 2.8E-15 9.4E-20 145.2 5.4 93 1-102 95-192 (201)
15 2ioq_A Chaperone protein HTPG; 99.5 4E-15 1.4E-19 165.5 6.6 202 1-240 120-354 (624)
16 2o1u_A Endoplasmin; GRP94, HSP 99.3 6E-13 2.1E-17 148.6 4.8 200 1-240 144-378 (666)
17 3t0h_A Heat shock protein HSP 99.0 2.6E-10 8.7E-15 112.3 5.8 78 1-92 123-209 (228)
18 4duh_A DNA gyrase subunit B; s 98.9 8.9E-10 3E-14 107.8 6.1 93 1-101 113-208 (220)
19 3o0i_A HSP90AA1 protein; HSP90 98.9 1.7E-09 5.8E-14 107.7 5.7 83 1-93 151-238 (256)
20 4emv_A DNA topoisomerase IV, B 98.7 1.7E-08 5.9E-13 99.0 6.2 92 1-101 117-214 (226)
21 1zxm_A TOPO IIA ATPase, DNA to 98.6 2.1E-08 7E-13 106.4 6.3 93 1-100 132-231 (400)
22 3lnu_A Topoisomerase IV subuni 98.5 8.6E-06 2.9E-10 86.3 20.6 220 1-245 128-379 (408)
23 3ttz_A DNA gyrase subunit B; p 98.4 1.3E-07 4.5E-12 91.0 5.0 86 8-101 93-181 (198)
24 2q2e_B Type 2 DNA topoisomeras 98.2 9.6E-08 3.3E-12 106.4 -3.1 136 1-157 110-265 (621)
25 2zbk_B Type 2 DNA topoisomeras 98.2 2.9E-07 9.9E-12 101.1 0.6 137 1-158 105-262 (530)
26 1mu5_A Type II DNA topoisomera 98.1 6.4E-07 2.2E-11 97.1 2.0 136 1-157 106-262 (471)
27 2ior_A Chaperone protein HTPG; 98.0 3.6E-06 1.2E-10 83.1 5.5 82 1-92 140-227 (235)
28 2gqp_A Endoplasmin; GRP94, HSP 97.5 9.7E-05 3.3E-09 72.8 6.3 84 1-99 131-220 (236)
29 1yc1_A HSP 86, heat shock prot 97.3 0.00025 8.5E-09 71.0 6.0 79 2-91 160-242 (264)
30 2wer_A ATP-dependent molecular 97.3 0.00026 9E-09 68.9 5.7 85 2-96 118-207 (220)
31 1qy5_A Endoplasmin; GRP94, NEC 96.9 0.001 3.5E-08 66.7 5.7 87 1-99 127-216 (269)
32 2cg9_A ATP-dependent molecular 95.7 0.011 3.9E-07 66.1 6.4 81 2-96 118-207 (677)
33 3peh_A Endoplasmin homolog; st 95.4 0.034 1.2E-06 55.8 8.2 87 1-100 138-232 (281)
34 3nmq_A Heat shock protein HSP 95.0 0.026 8.8E-07 55.4 5.6 83 1-96 130-219 (239)
35 1pvg_A DNA topoisomerase II; G 92.2 0.2 6.8E-06 53.2 6.8 91 2-100 145-244 (418)
36 3ied_A Heat shock protein; HSP 87.3 0.64 2.2E-05 46.0 5.4 75 2-90 176-262 (272)
37 2e5n_A RNA polymerase II elong 37.8 15 0.0005 30.8 2.0 31 489-519 30-60 (100)
38 2doa_A RNA polymerase II elong 27.6 22 0.00074 30.0 1.4 31 489-519 29-59 (104)
No 1
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.6e-60 Score=493.68 Aligned_cols=251 Identities=48% Similarity=0.841 Sum_probs=205.2
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI 80 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I 80 (567)
+|||||||+||++||+|+|+||++++..||++.|++|++....+|++++.||+|+|+|||||+|+|||+|++.+.|+.+|
T Consensus 98 ~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i 177 (348)
T 3na3_A 98 YGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKI 177 (348)
T ss_dssp -CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHH
T ss_pred CCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhhhhccccHHHHHHH
Confidence 69999999999999999999999999999999999999875568889999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCC
Q 008397 81 VDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV 160 (567)
Q Consensus 81 ~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~ 160 (567)
.++|++||++||+|+|+|+++|+....++|.+++++.++|.++||.+++++|++++.+. +. .+++++||||.|+++
T Consensus 178 ~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~--~~--~~~~i~G~is~p~~~ 253 (348)
T 3na3_A 178 LEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED--KT--LAFKMNGYISNANYS 253 (348)
T ss_dssp HHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEE--GG--GTEEEEEEEECSSCC
T ss_pred HHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeec--CC--ccEEEEEEEeCCccC
Confidence 99999999999999999999997666789999999999999999999999999998876 22 369999999999988
Q ss_pred CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHH
Q 008397 161 AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 240 (567)
Q Consensus 161 ~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~ 240 (567)
+++..||+|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.|||||||+|+||+|.+|++|++.|+++|++
T Consensus 254 ~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~ 333 (348)
T 3na3_A 254 VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIES 333 (348)
T ss_dssp BSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTHHHHHHHHH
T ss_pred CCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccccccc
Q 008397 241 KLRQSNDSRTYKEQT 255 (567)
Q Consensus 241 ~L~~~~~~r~~~~~~ 255 (567)
+|...+++|+|.+|+
T Consensus 334 ~l~~~~~sr~f~~~~ 348 (348)
T 3na3_A 334 KLLGSNSSRMYFTQT 348 (348)
T ss_dssp HHC------------
T ss_pred HHhcCCCcceeeccC
Confidence 999999999998764
No 2
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-54 Score=451.92 Aligned_cols=241 Identities=24% Similarity=0.418 Sum_probs=219.7
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEe-CCeeccccccccCCCCcEEEEcccccccHHHHH-hhcCchHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRK-TLQNSSDDYT 78 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~-~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk-~lks~~~e~~ 78 (567)
+|||||||+||++||+|+|+||+++ ..||++.|+ +|++. ...+++++.||+|+|+|||||+|+||| ++|+.+.|+.
T Consensus 95 ~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~-~~~~~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~ 172 (367)
T 3h4l_A 95 LGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHIT-SKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFT 172 (367)
T ss_dssp EEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEE-EEEEECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHH
T ss_pred cCccchHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEE-eeccccCCCCeEEEEchhhccCchhhhhhccchHHHHH
Confidence 5999999999999999999999998 899999997 79887 457888999999999999999999999 8899999999
Q ss_pred HHHHHHHhhhhccCceEEEEEEC---CeeeeEEEcCCCCCHHHHHHHHhChhhhhcccccccccc---------------
Q 008397 79 KIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEY--------------- 140 (567)
Q Consensus 79 ~I~~~v~~yAl~~p~V~F~l~~~---~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~--------------- 140 (567)
+|.++|++||++||+|+|+|+++ ++.+..++|++++++.++|.++||..++++|++++...+
T Consensus 173 ~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~ 252 (367)
T 3h4l_A 173 KCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDD 252 (367)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGGCCCCC------
T ss_pred HHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEeccccccccccccccccccc
Confidence 99999999999999999999973 456789999999999999999999999999999887100
Q ss_pred ----CCCCCcceEEEEEEeCCCCC---CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceee
Q 008397 141 ----NDSSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDV 213 (567)
Q Consensus 141 ----~~~~~~~~~v~G~is~~~~~---~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDV 213 (567)
.+. .+++++||||+|.+. +++..||+|||||+|.++.|.++|+++|+.++ .++||++||+|+|||+.|||
T Consensus 253 ~~~~~~~--~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~-~~~~P~~~L~l~~~p~~vDV 329 (367)
T 3h4l_A 253 PDFLDLD--YKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN-NVQFPAVFLNLELPMSLIDV 329 (367)
T ss_dssp ------C--CEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC-SSCBCCEEEEEECCGGGEEC
T ss_pred ccccccC--CcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcC-CCCCcEEEEEEEcChHHcce
Confidence 012 679999999999863 23678999999999999999999999999986 58999999999999999999
Q ss_pred ccCCCCCeEecCChHHHHHHHHHHHHHHHhcCC
Q 008397 214 NVHPTKREVSLLNQELIVEKIQSAVELKLRQSN 246 (567)
Q Consensus 214 NvhPtK~eV~F~~e~~I~~~i~~~i~~~L~~~~ 246 (567)
||||+|+||+|.+|+.|++.|+++|.++|..++
T Consensus 330 NVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 330 NVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp CCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred eECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999997654
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=4.8e-50 Score=422.72 Aligned_cols=241 Identities=25% Similarity=0.413 Sum_probs=212.3
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEe-CCeeccccccccCCCCcEEEEcccccccHHHHH-hhcCchHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRK-TLQNSSDDYT 78 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~-~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk-~lks~~~e~~ 78 (567)
+|||||||+||++||+|+|+||+.++..||++.++ +|++. ..++++.+.||+|+|+|||+|+|+||| ++++.+.|+.
T Consensus 104 ~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~ 182 (365)
T 1h7s_A 104 FGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKII-QKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYA 182 (365)
T ss_dssp ESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEE-EEEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHH
T ss_pred cCCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceE-eecccCCCCCcEEEEeecccccchhhhhhccchHHHHH
Confidence 59999999999999999999999999999999997 78876 356788899999999999999999999 7899999999
Q ss_pred HHHHHHHhhhhccCceEEEEEECC---eeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccC------------CC
Q 008397 79 KIVDLLSRMAIHHTNVSFSCRKHG---AARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYN------------DS 143 (567)
Q Consensus 79 ~I~~~v~~yAl~~p~V~F~l~~~~---~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~------------~~ 143 (567)
+|.++|++||+++|+|+|+|.+++ +.+..+++++++++.+++.++||.+++++|+++...... +.
T Consensus 183 ~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~ 262 (365)
T 1h7s_A 183 KMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDA 262 (365)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCHHHHHHHTCCTTTT
T ss_pred HHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccCCccccccccccccccc
Confidence 999999999999999999999865 347889999999999999999999999999998543200 00
Q ss_pred CCcceEEEEEEeCCCCC---CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCC
Q 008397 144 SSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKR 220 (567)
Q Consensus 144 ~~~~~~v~G~is~~~~~---~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~ 220 (567)
...+++++||++.|.+. .++..||+|||||+|.++.|.++|+++|+.+++. +||+++|+|+|||+.|||||||+|+
T Consensus 263 ~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~l~~~p~~vDvNVhP~K~ 341 (365)
T 1h7s_A 263 LHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRH-QYPFVVLNISVDSECVDINVTPDKR 341 (365)
T ss_dssp TSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTT-CBCCEEEEEECCGGGEEEC------
T ss_pred ccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCcc-CCcEEEEEEEeChHHcceEECCCcC
Confidence 01569999999999876 2467899999999999999999999999999987 8999999999999999999999999
Q ss_pred eEecCChHHHHHHHHHHHHHHHh
Q 008397 221 EVSLLNQELIVEKIQSAVELKLR 243 (567)
Q Consensus 221 eV~F~~e~~I~~~i~~~i~~~L~ 243 (567)
||+|.+|+.|++.|+++|.++|.
T Consensus 342 eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 342 QILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp CEEETTHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999884
No 4
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=405.52 Aligned_cols=192 Identities=39% Similarity=0.745 Sum_probs=184.7
Q ss_pred ccccccHHHHHHHhhhhcCCcccccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcccCeEecCCC
Q 008397 333 TADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDP 412 (567)
Q Consensus 333 ~~~l~Sv~~l~~~i~~~~~~~l~~~~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f~n~~~~~L~~P 412 (567)
.++|+||++|+++|.++.|.+|+++|++|+|||+||.+++|+||+++|||||+.++++|+|||+++.+|||||.++|++|
T Consensus 33 ~~~LtSV~~Lr~ev~~~~h~~Ltei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L~~P 112 (284)
T 3rbn_A 33 IINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEP 112 (284)
T ss_dssp CCCCHHHHHHHHHHHHHBCHHHHHHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEEEEE
T ss_pred EEechhHHHHHHHHHHhcCHHHHHHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEeeCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEecCCCccccCcccCCCCCCCCCHHHHH
Q 008397 413 APLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFV 492 (567)
Q Consensus 413 ~~l~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~L~siP~ll~~y~P~~~~Lp~fl 492 (567)
++|.+|+.++++.+ .++|+++|++++++++.++++|.++++||.|||||+|+++|+|.+||+++++|+|++++||.|+
T Consensus 113 ~~L~dLl~~al~~~--~~~~~e~d~~~~~~~e~i~~~L~~~~eML~EYFsi~Id~~g~L~slPlLl~~Y~P~l~~LP~Fl 190 (284)
T 3rbn_A 113 APLFDLAMLALDSP--ESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFI 190 (284)
T ss_dssp EEHHHHHHHHHTSG--GGTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHCCEECTTSEEEEEEECSTTCCCCGGGHHHHH
T ss_pred CCHHHHHHHHhhcc--cccCCcccccHHHHHHHHHHHHHHHHHHHHhheeEEEeCCCcEEEechhhcCCCCChHHHHHHH
Confidence 99999999999765 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHHhhcccCCCCCC
Q 008397 493 LCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLL 526 (567)
Q Consensus 493 ~~L~~~v~w~~E~~cf~~i~r~lA~fys~~~~~~ 526 (567)
+|||++|||++|++||++|||+||.||+..|.+.
T Consensus 191 lrL~t~VdW~~Ek~Cf~~i~relA~FY~~~~~~~ 224 (284)
T 3rbn_A 191 LRLATEVNWDEEKECFESLSKECAMFYSIRKQYI 224 (284)
T ss_dssp HHHHHTSCCSSHHHHHHHHHHHHHHHHSCCGGGC
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCCccCC
Confidence 9999999999999999999999999996554443
No 5
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=3.2e-48 Score=404.96 Aligned_cols=234 Identities=25% Similarity=0.388 Sum_probs=214.6
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI 80 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I 80 (567)
+||||++|||+++||+|+|+||+.++..+|++..++|....+..+++.+.||+|+|+|||||+|+|+|++++...|+.+|
T Consensus 94 ~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i 173 (333)
T 1b63_A 94 LGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHI 173 (333)
T ss_dssp SCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHH
T ss_pred cCccccchhhhhcCCcEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEecccccchhhhhhhccHHHHHHHH
Confidence 59999999999999999999999998899998666654222456778899999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEEEECCeeeeEEEcCC---CCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCC
Q 008397 81 VDLLSRMAIHHTNVSFSCRKHGAARADVHSIA---TSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNS 157 (567)
Q Consensus 81 ~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~---~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~ 157 (567)
.+++++||+++|+|+|+|+++|+ ..+.+.+ .+++.+++..+||..++.++++++.+. .+++++||++.|
T Consensus 174 ~~~~~~~al~~p~v~~~l~~ng~--~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~------~~~~v~G~i~~p 245 (333)
T 1b63_A 174 DEIIRRIALARFDVTINLSHNGK--IVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQH------GDLTLRGWVADP 245 (333)
T ss_dssp HHHHHHHHHHCTTCEEEEEETTE--EEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEE------TTEEEEEEEECG
T ss_pred HHHHHHHhccCCCcEEEEEECCE--EEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecC------CCEEEEEEEEcC
Confidence 99999999999999999999984 4556554 467899999999999999999999887 789999999999
Q ss_pred CCCCC--CceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHH
Q 008397 158 NYVAK--KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQ 235 (567)
Q Consensus 158 ~~~~~--k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~ 235 (567)
+..++ +..||+|||||+|.++.|.++|+++|+.++++++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+
T Consensus 246 ~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~ 325 (333)
T 1b63_A 246 NHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIY 325 (333)
T ss_dssp GGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHH
T ss_pred ccccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHH
Confidence 87643 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008397 236 SAVELKL 242 (567)
Q Consensus 236 ~~i~~~L 242 (567)
++|.++|
T Consensus 326 ~~i~~~l 332 (333)
T 1b63_A 326 QGVLSVL 332 (333)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
No 6
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=99.76 E-value=6.5e-19 Score=170.34 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=110.5
Q ss_pred ccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHh--cccCeEecCCCcchhHHHhhhccccccccccC
Q 008397 356 DIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRF--AHFNAIQLSDPAPLSELLMLALKEEDLDVENS 433 (567)
Q Consensus 356 ~~~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f--~n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~ 433 (567)
+.|+.+++|||++++|||+|.+++||||||||||||+.||++++++ +...+|.|..|+.++ ++..
T Consensus 4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~------ls~~------- 70 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFH------YSTN------- 70 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEE------CCTT-------
T ss_pred ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEe------cCHH-------
Confidence 3467899999999999999999999999999999999999999998 356789999999987 5333
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhhcceEEecCCC----ccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHH
Q 008397 434 ENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQ 509 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~----L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~ 509 (567)
+.+++.++.+.|.+ +||+++.+|. |+++|.++...... +.+++++..|...-. ..-.+-.+
T Consensus 71 ------------e~~~l~~~~~~l~~-~Gf~~e~~g~~~~~v~~vP~~l~~~~~~-~~l~ell~~l~~~~~-~~~~~~~~ 135 (197)
T 3kdg_A 71 ------------EALIIEQHKQELES-VGVFLESFGSNSYIVRCHPAWFPKGEEA-ELIEEIIQQVLDSKN-IDIKKLRE 135 (197)
T ss_dssp ------------HHHHHHHTHHHHHH-TTCCCEECSTTEEEEEEEETTSCTTCHH-HHHHHHHHHHHHHSS-CCHHHHHH
T ss_pred ------------HHHHHHHHHHHHHh-CCCEEEECCCCEEEEEecCcccccccHH-HHHHHHHHHHHhcCC-CCHHHHHH
Confidence 67889999999999 7999999876 99999999975433 456666666654322 22334466
Q ss_pred HHHHHHhhcccCCC
Q 008397 510 AIAAALGNFYAMHP 523 (567)
Q Consensus 510 ~i~r~lA~fys~~~ 523 (567)
.++..+||-.|+.-
T Consensus 136 ~~~~~~ACr~AIk~ 149 (197)
T 3kdg_A 136 EAAIMMSCKGSIKA 149 (197)
T ss_dssp HHHHHHHHCC----
T ss_pred HHHHHHhhHhhccC
Confidence 78888898877543
No 7
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=99.75 E-value=1.7e-18 Score=169.94 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=109.2
Q ss_pred ccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhc---ccCeEecCCCcchhHHHhhhcccccccccc
Q 008397 356 DIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFA---HFNAIQLSDPAPLSELLMLALKEEDLDVEN 432 (567)
Q Consensus 356 ~~~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f~---n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~ 432 (567)
+.++-.++|||++++|||+|.+++||||||||||||+.||+++.++. ...+|.|..|+.++ ++..
T Consensus 25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~------Ls~~------ 92 (220)
T 3ncv_A 25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFA------ASHE------ 92 (220)
T ss_dssp CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEE------CCHH------
T ss_pred CCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEE------cCHH------
Confidence 34567899999999999999999999999999999999999999884 47789999999887 5322
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEecCCC----ccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHH
Q 008397 433 SENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCF 508 (567)
Q Consensus 433 ~~~~~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~----L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf 508 (567)
+.+++.++++.|.+ +||+|+.+|. |+++|.+|..-... +.+.+++..|.....-..-.+..
T Consensus 93 -------------e~~~l~~~~~~L~~-lGf~ie~fg~~~v~V~~vP~~l~~~d~~-~ll~~ll~~l~~~~~~~~~~~~~ 157 (220)
T 3ncv_A 93 -------------ECAALADHAETLAG-FGLELSDMGGNTLAVRAAPVMLGKSDVV-SLARDVLGELAQVGSSQTIASHE 157 (220)
T ss_dssp -------------HHHHHHHHHHHHHH-TTCEEECCSTTEEEEEEEETTSCCSCHH-HHHHHHHHHHTTCC-----CTTH
T ss_pred -------------HHHHHHHHHHHHHh-CCCEEEECCCCEEEEEEcCcccCCCCHH-HHHHHHHHHHHhcCCCcchHHHH
Confidence 77889999999999 7999999876 99999999874332 44455555554322111122346
Q ss_pred HHHHHHHhhcccCCC
Q 008397 509 QAIAAALGNFYAMHP 523 (567)
Q Consensus 509 ~~i~r~lA~fys~~~ 523 (567)
+.++..+||-.|+.-
T Consensus 158 ~~~~as~ACr~AIk~ 172 (220)
T 3ncv_A 158 NRILATMSCHGSIRA 172 (220)
T ss_dssp HHHHHHHTTCSSSCS
T ss_pred HHHHHHHHHHhhhhc
Confidence 778888888876543
No 8
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.74 E-value=5.4e-17 Score=170.83 Aligned_cols=222 Identities=13% Similarity=0.085 Sum_probs=169.9
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCee------cccccccc--CCCCcEEEEcccccccHHHHHhhc
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM------ESEPKACA--AVKGTQIMVENLFYNMIARRKTLQ 71 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~------~~~~~~~a--~~~GTtV~V~dLFyN~PvRrk~lk 71 (567)
|+++| .|+||+++| +++|+|+..+ .+|+..|++|+. ....++++ .+.||+|+++ |.|++| +
T Consensus 96 y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~------Pd~~~F-~ 165 (369)
T 3cwv_A 96 WGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV------PDATIF-E 165 (369)
T ss_dssp TTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE------ECTTTC-S
T ss_pred ccccC-HHHHHHHhhceEEEEEEECC--CEEEEEEeCCcccccccccCCceEecccCCCCCEEEEE------ECHHHh-C
Confidence 57888 899999996 7999999764 489999999987 53234433 6899999998 999888 8
Q ss_pred CchHHHHHHHHHHHhhhhccCceEEEEEECCe-eeeEEEcCCCCCHHHHHHHHhChh--hhhccccccccccCCCCCcce
Q 008397 72 NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS--VASNLVQLEASEYNDSSSFVF 148 (567)
Q Consensus 72 s~~~e~~~I~~~v~~yAl~~p~V~F~l~~~~~-~~~~l~t~~~~s~~~~i~~i~G~~--~~~~l~~v~~~~~~~~~~~~~ 148 (567)
+...|+..|.+.++++|+.||+|+|+|..++. .+..|.++++ +.+.+..++|.+ +..+++.++.+. .++
T Consensus 166 ~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gG--l~~~v~~l~~~~~~~~~~~i~~~~~~------~~i 237 (369)
T 3cwv_A 166 VLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGG--VAQWAHVLTEARPQLHPEPVVFDFTW------DGL 237 (369)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTTH--HHHHHHHHHTTSCBSSSSCEEEEEEE------TTE
T ss_pred CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCch--HHHHHHHHhcCCcccCCCcEEEEEec------CCE
Confidence 88889999999999999999999999998762 2467787763 999999999975 445677777665 679
Q ss_pred EEEEEEeCCCCCCCCceEEEEEcCeEeCC-----chHHHHHHHHhhccCCCC----------CCcEEEEEEEcCCCc--e
Q 008397 149 KMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATFPKA----------SKPFIYMSIVLPPEH--V 211 (567)
Q Consensus 149 ~v~G~is~~~~~~~k~~q~lFIN~R~V~~-----~~l~kaI~~~y~~~lp~~----------~~P~~~L~i~i~p~~--v 211 (567)
.++|+++.+. +.+..|+.|||||++.. ..++.||.++|..++.+. ..-+++|++.++.-. .
T Consensus 238 ~ve~a~~~~~--~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisvk~~~P~~~F 315 (369)
T 3cwv_A 238 RVQCALQWCE--DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVSGPRRQMAF 315 (369)
T ss_dssp EEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEECCGGGCCB
T ss_pred EEEEEEEecC--CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEeccCCcchhc
Confidence 9999999764 23567999999999999 789999999999887321 123788999988544 3
Q ss_pred eeccCCCCCeEecCCh-HHHHHHHHHHHHHHHhcC
Q 008397 212 DVNVHPTKREVSLLNQ-ELIVEKIQSAVELKLRQS 245 (567)
Q Consensus 212 DVNvhPtK~eV~F~~e-~~I~~~i~~~i~~~L~~~ 245 (567)
+ -.||...-=..- ..+-+.+.+.+..+|...
T Consensus 316 e---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 316 A---GPTKELLAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp S---STTCCSBCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred c---ccccchhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3 256655433222 334466666777777543
No 9
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.72 E-value=7.9e-17 Score=170.86 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=157.9
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeecccccccc--C--CCCcEEEEcccccccHHHHHhhcCchH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKACA--A--VKGTQIMVENLFYNMIARRKTLQNSSD 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a--~--~~GTtV~V~dLFyN~PvRrk~lks~~~ 75 (567)
.||||+||+|++++| +++|+|+..+ .+|+..|.+|++....++++ . +.||+|+++ |.|++| ++...
T Consensus 109 gGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~------Pd~~~F-~~~~~ 179 (390)
T 1s16_A 109 GGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW------PDETFF-DSPRF 179 (390)
T ss_dssp SCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE------ECGGGS-SCCSC
T ss_pred CCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecccccCCCCceEEEEE------ECcccc-Ccccc
Confidence 599999999999999 6999999744 69999999998764333332 2 789999987 888888 77778
Q ss_pred HHHHHHHHHHhhhhccCceEEEEEECCe-eeeEEEcCCCCCHHHHHHHHhChh--hhhccccccccccCCCCCcceEEEE
Q 008397 76 DYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS--VASNLVQLEASEYNDSSSFVFKMDG 152 (567)
Q Consensus 76 e~~~I~~~v~~yAl~~p~V~F~l~~~~~-~~~~l~t~~~~s~~~~i~~i~G~~--~~~~l~~v~~~~~~~~~~~~~~v~G 152 (567)
++..|.+.|+++|+.||+|+|+|.+++. .+..|++.++ +.+.+..++|.. +..+++.++.+. .++.++|
T Consensus 180 e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gG--l~~~v~~l~~~~~~~~~~~i~~~~~~------~~~~ve~ 251 (390)
T 1s16_A 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG--LNDYLAEAVNGLPTLPEKPFIGNFAG------DTEAVDW 251 (390)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSSC--HHHHHHHHHTTSCCEEEEEEEEEEEC------SSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCCc--HHHHHHHHhCCCcccCCCcEEEEEee------CCEEEEE
Confidence 9999999999999999999999998763 2456777663 999999999863 334566776665 6799999
Q ss_pred EEeCCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhc--cCCCC---------CCcEEEEEEEcCCCcee
Q 008397 153 YVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFPKA---------SKPFIYMSIVLPPEHVD 212 (567)
Q Consensus 153 ~is~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~--~lp~~---------~~P~~~L~i~i~p~~vD 212 (567)
+++.|+- +....|+.|||||++... .|.++|++.... +++++ ..=+++|++.+|.-..+
T Consensus 252 a~~~~~~-~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avisvki~~P~Fe 330 (390)
T 1s16_A 252 ALLWLPE-GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 (390)
T ss_dssp EEEECTT-CCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEEEEESSCCBS
T ss_pred EEEeccC-CCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEEeecCCCCcc
Confidence 9997522 224679999999999973 355555554332 12211 12378899998855443
Q ss_pred eccCCCCCeEecCCh-HHHHHHHHHHHHHHHh
Q 008397 213 VNVHPTKREVSLLNQ-ELIVEKIQSAVELKLR 243 (567)
Q Consensus 213 VNvhPtK~eV~F~~e-~~I~~~i~~~i~~~L~ 243 (567)
-.||...-=..- ..+-..+.+.+..+|.
T Consensus 331 ---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 359 (390)
T 1s16_A 331 ---GQTKERLSSRQCAAFVSGVVKDAFILWLN 359 (390)
T ss_dssp ---STTCCCBCCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccchhcChhHHHHHHHHHHHHHHHHHH
Confidence 246654322111 2233455555555554
No 10
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=99.65 E-value=2.9e-16 Score=150.70 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=102.1
Q ss_pred ccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHh-cccCeEecCCCcchhHHHhhhccccccccccCcCc
Q 008397 358 VRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRF-AHFNAIQLSDPAPLSELLMLALKEEDLDVENSEND 436 (567)
Q Consensus 358 ~~~~~~VGqvd~~yiLiQ~~~~LyLiDqhaa~eri~Yq~~l~~f-~n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~ 436 (567)
.+..+++||++++|||+|.+++||||||||| ||+.||+++.+. +...+|.|..|+.+. ++..
T Consensus 6 ~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~------ls~~---------- 68 (188)
T 1x9z_A 6 QSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLK------VSAE---------- 68 (188)
T ss_dssp CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEE------CCHH----------
T ss_pred CCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEE------eCHH----------
Confidence 3457899999999999999999999999999 999999999872 357789999999887 5332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcceEEecCCC---ccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHH
Q 008397 437 DLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN---LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAA 513 (567)
Q Consensus 437 ~~~~~~~~~~~~~L~e~~emL~eyFgi~Ie~~G~---L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~~i~r 513 (567)
+...+.++.+.|.+ +||+|+.+|. |+++|.+|...... +.+++++..|..... .. .+.++.
T Consensus 69 ---------e~~~l~~~~~~l~~-~Gf~~e~~g~~~~v~~vP~~l~~~~~~-~li~~ll~~l~~~~~-~~----~~~~~~ 132 (188)
T 1x9z_A 69 ---------EKSALEKAQSALAE-LGIDFQSDAQHVTIRAVPLPLRQQNLQ-ILIPELIGYLAKQSV-FE----PGNIAQ 132 (188)
T ss_dssp ---------HHHHHHHHHHHHHH-TTCEEEECSSEEEEEEEEGGGTTSCHH-HHHHHHHHHHTTCSS-CC----HHHHHH
T ss_pred ---------HHHHHHHHHHHHHh-CCcEEEEcCCcEEEEecCchhcccCHH-HHHHHHHHHHHhCCc-ch----HHHHHH
Confidence 78899999999999 7999999988 99999999875332 456666666643111 11 156677
Q ss_pred HHhhcc
Q 008397 514 ALGNFY 519 (567)
Q Consensus 514 ~lA~fy 519 (567)
.+||-.
T Consensus 133 ~~AC~~ 138 (188)
T 1x9z_A 133 WIARNL 138 (188)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 777655
No 11
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.63 E-value=9.5e-16 Score=162.52 Aligned_cols=192 Identities=12% Similarity=0.130 Sum_probs=144.5
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccccc--cccCCCCcEEEEcccccccHHHHHhhcC-chHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQN-SSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks-~~~e 76 (567)
.||||+||+|++++| +++|+|+..+ .+|+..|.+|++....+ ..+.+.||+|+++ |.|++| ++ ...+
T Consensus 112 gGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~~~~~~GT~V~f~------Pd~~~F-~~~~~~e 182 (391)
T 1ei1_A 112 GGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW------PSLETF-TNVTEFE 182 (391)
T ss_dssp SCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEECSCCEEEEEEE------ECTTTC-CSCCSCC
T ss_pred CCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceeccCcCCCccEEEEE------EChhhh-CCccccC
Confidence 599999999999999 6999999754 69999999998763231 2236899999987 999888 77 7889
Q ss_pred HHHHHHHHHhhhhccCceEEEEEECCe-eeeEEEcCCCCCHHHHHHHHhChh--hhhccccccccccCCCCCcceEEEEE
Q 008397 77 YTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS--VASNLVQLEASEYNDSSSFVFKMDGY 153 (567)
Q Consensus 77 ~~~I~~~v~~yAl~~p~V~F~l~~~~~-~~~~l~t~~~~s~~~~i~~i~G~~--~~~~l~~v~~~~~~~~~~~~~~v~G~ 153 (567)
+..|.+.|+++|+.||+|+|+|.+++. .+..|+..+ + +.+.+..++|.. +...++.++.+. .++.++++
T Consensus 183 ~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g-G-l~~~v~~l~~~~~~~~~~~i~~~~~~------~~i~veva 254 (391)
T 1ei1_A 183 YEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG-G-IKAFVEYLNKNKTPIHPNIFYFSTEK------DGIGVEVA 254 (391)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS-H-HHHHHHHHHHTSCBSSSCCEEEEEEE------TTEEEEEE
T ss_pred HHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCc-h-HHHHHHHHcCCCcccccccEEEEEec------CCEEEEEE
Confidence 999999999999999999999998763 235677766 3 999999998765 444566666655 67999999
Q ss_pred EeCCCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhc--cCCC----------CCCcEEEEEEEcCCCce
Q 008397 154 VSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFPK----------ASKPFIYMSIVLPPEHV 211 (567)
Q Consensus 154 is~~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~--~lp~----------~~~P~~~L~i~i~p~~v 211 (567)
++.+.. ....|+.|||||++... .|.++|++..+. ++.+ ...=+++|++.+|.-..
T Consensus 255 ~~~~~~--~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~~~dvregl~avisvki~~P~F 331 (391)
T 1ei1_A 255 LQWNDG--FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 331 (391)
T ss_dssp EEEBSS--CCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTTEEEEEEEECSSCCB
T ss_pred EEccCC--CCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccCHHHHhhccEEEEEEecCCCCc
Confidence 987632 24568999999999974 455555553331 1110 12347888988885443
No 12
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.55 E-value=3.1e-15 Score=164.48 Aligned_cols=203 Identities=15% Similarity=0.177 Sum_probs=144.3
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCC--CCCeEEEEEeCCeeccccccc-cCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEPKAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~--~~~g~~~~~~~G~~~~~~~~~-a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
.||||+++.|+..|| +|+|+||+.+ ...||.....+|... ...++ +.+.||+|++. |+....|
T Consensus 120 iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~~~~~~GT~I~L~------------Lk~d~~E 186 (559)
T 1y4s_A 120 IGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADITKEDRGTEITLH------------LREGEDE 186 (559)
T ss_dssp CSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEE-EEEEECCCSCEEEEEEE------------ECTTCGG
T ss_pred cCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCee-EEeECCCCCCCeEEEEE------------Ecchhhh
Confidence 599999999999996 7999999998 377898888765543 23444 56899999997 3433334
Q ss_pred ---HHHHHHHHHhhh--hccCceEEE--------------EEECCeeeeEEEcCCCCCHHHHHHHHhCh---hhhhcccc
Q 008397 77 ---YTKIVDLLSRMA--IHHTNVSFS--------------CRKHGAARADVHSIATSSRLDSIRTVYGV---SVASNLVQ 134 (567)
Q Consensus 77 ---~~~I~~~v~~yA--l~~p~V~F~--------------l~~~~~~~~~l~t~~~~s~~~~i~~i~G~---~~~~~l~~ 134 (567)
..+|.++|.+|| +.+| |.|. +.+++ +.+|.++++.-..+.+...|+. .....|..
T Consensus 187 fle~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~--~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ 263 (559)
T 1y4s_A 187 FLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA--QALWTRNKSEITDEEYKEFYKHIAHDFNDPLTW 263 (559)
T ss_dssp GSCHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCC--CCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEE
T ss_pred cchHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC--ccceecCcccccHHHHHHHHHhhhhhhhcCeEE
Confidence 789999999999 9999 9993 33333 5566665543334467777763 33455777
Q ss_pred ccccccCCCCCcceEEEEEEeCCC------CC-CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcC
Q 008397 135 LEASEYNDSSSFVFKMDGYVSNSN------YV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 207 (567)
Q Consensus 135 v~~~~~~~~~~~~~~v~G~is~~~------~~-~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~ 207 (567)
+..+. + +.+.++|++..|. +. .++..+.+|||||+|.+.. ..++|.. +.+|...++
T Consensus 264 ih~~~---e--g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~---------~~llP~~---l~fv~gvVD 326 (559)
T 1y4s_A 264 SHNRV---E--GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA---------EQFMPNY---LRFVRGLID 326 (559)
T ss_dssp EEECC---C--SSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEEEE---------GGGSCGG---GTTCEEEEE
T ss_pred EEecc---C--CceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeecch---------hhhChHh---HhheeEeeC
Confidence 77665 1 3589999998886 22 2367899999999999874 6777762 223555599
Q ss_pred CCceeeccCCCCCeEecCChHHHHHHHHHHHHHH
Q 008397 208 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 241 (567)
Q Consensus 208 p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~ 241 (567)
++.+|+||. ||. +.++.++..|++.+.+.
T Consensus 327 s~dlplNVS---RE~--lq~~~~l~~I~~~l~kk 355 (559)
T 1y4s_A 327 SSDLPLNVS---REI--LQDSTVTRNLRNALTKR 355 (559)
T ss_dssp ESSSCTTCC---TTG--GGGCHHHHHHHHHHHHH
T ss_pred hhhCCCeeC---chh--hhhhHHHHHHHHHHHHH
Confidence 999999995 554 45566666666655443
No 13
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.55 E-value=6.8e-14 Score=148.48 Aligned_cols=191 Identities=11% Similarity=0.116 Sum_probs=142.9
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeecccccccc----CCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKACA----AVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a----~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
||+|++|+++.++| +++|+|+..+ .+|+..|.+|+...+.++++ .+.||+|+++ |.|++| ++...+
T Consensus 111 G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~------Pd~~~F-~~~~~~ 181 (390)
T 1kij_A 111 GLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK------PDPEIF-GNLRFD 181 (390)
T ss_dssp CSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE------ECHHHH-TTCCCC
T ss_pred CCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeeccccCCCCCcEEEEE------EChHHh-CCcccc
Confidence 89999999999999 5999999654 68999999998753333333 6799999996 888887 777778
Q ss_pred HHHHHHHHHhhhhccCceEEEEEECCee-eeEEEcCCCCCHHHHHHHHhChh--hhhccccccccccCCCCCcceEEEEE
Q 008397 77 YTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGVS--VASNLVQLEASEYNDSSSFVFKMDGY 153 (567)
Q Consensus 77 ~~~I~~~v~~yAl~~p~V~F~l~~~~~~-~~~l~t~~~~s~~~~i~~i~G~~--~~~~l~~v~~~~~~~~~~~~~~v~G~ 153 (567)
+..|.+.|+++|+.||+|+|+|...+.. +..|+.++ .+.+.+..++|.. +...++.++.+. .++.++++
T Consensus 182 ~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~--Gl~~~v~~l~~~~~~~~~~~i~~~~~~------~~i~ve~a 253 (390)
T 1kij_A 182 PSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKG--GVASFAKALAEGEDLLYEKPFLIRGTH------GEVEVEVG 253 (390)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTT--HHHHHHHHHTTTSCBSCSSCEEEEEEE------TTEEEEEE
T ss_pred HHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCC--cHHHHHHHHhCCCCcCCCCcEEEEeec------CCeEEEEE
Confidence 9999999999999999999999987532 35677766 3999999999875 444566676655 67899999
Q ss_pred EeCCCCCCCCceEEEEEcCeEeCCc-----hHH----HHHHHHhhc--cCCCC----------CCcEEEEEEEcCCCce
Q 008397 154 VSNSNYVAKKTTMVLFVNDRLVECA-----PLK----RAVEIVYAA--TFPKA----------SKPFIYMSIVLPPEHV 211 (567)
Q Consensus 154 is~~~~~~~k~~q~lFIN~R~V~~~-----~l~----kaI~~~y~~--~lp~~----------~~P~~~L~i~i~p~~v 211 (567)
++-.. +.+..|+.|||||++... .++ ++|++.... ++++. ..=.+++++.++--..
T Consensus 254 ~~~~~--~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~~dvregl~avisvki~~P~F 330 (390)
T 1kij_A 254 FLHTQ--GYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQF 330 (390)
T ss_dssp EEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEEEEEEEECSSCCB
T ss_pred EEecC--CCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCHHHHhhhcEEEEEeecCCCcc
Confidence 98632 225679999999999973 344 444443332 12211 1237889998885443
No 14
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.54 E-value=2.8e-15 Score=145.23 Aligned_cols=93 Identities=14% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccccc---ccc-CCCCcEEEEcccccccHHHHHhhcCchH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA-AVKGTQIMVENLFYNMIARRKTLQNSSD 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~---~~a-~~~GTtV~V~dLFyN~PvRrk~lks~~~ 75 (567)
+|||||||+||++|| +|+|+|+..+. +|++.|.+|+.+...+ +++ .+.||+|+| .|+|++| ++...
T Consensus 95 ~GfrGeglssinalS~~l~v~t~~~g~--~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f------~Pdr~~F-~~~~~ 165 (201)
T 3fv5_A 95 GGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF------WPDETFF-DSPRF 165 (201)
T ss_dssp -------CHHHHHTEEEEEEEEEETTE--EEEEEEETTEEEEEEEEEEECCTTCCEEEEEE------EECGGGS-SCCCC
T ss_pred CcccceecchhhcccceEEEEEEecCc--eEEEEEeCCEEcccceecccCCCCCCCeEEEE------EECHHHc-CCCcc
Confidence 599999999999999 89999998653 7999999999763333 222 679999999 4999888 98899
Q ss_pred HHHHHHHHHHhhhhccCceEEEEEECC
Q 008397 76 DYTKIVDLLSRMAIHHTNVSFSCRKHG 102 (567)
Q Consensus 76 e~~~I~~~v~~yAl~~p~V~F~l~~~~ 102 (567)
|+..|.+.|++||+.||+|+|+|.++.
T Consensus 166 e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 166 SVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 999999999999999999999999864
No 15
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.53 E-value=4e-15 Score=165.53 Aligned_cols=202 Identities=15% Similarity=0.173 Sum_probs=143.8
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCC--CCCeEEEEEeCCeeccccccc-cCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEPKAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~--~~~g~~~~~~~G~~~~~~~~~-a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
.||||+++.|+..|| +|+|+||+.+ +..||+....+|... ...++ +.+.||+|++. |+....|
T Consensus 120 iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~~~~~~GT~I~L~------------Lk~d~~E 186 (624)
T 2ioq_A 120 IGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADITKEDRGTEITLH------------LREGEDE 186 (624)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EEEEECCSSSEEEEEEE------------ECTTCGG
T ss_pred cCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EEEECCCCCCCeEEEEE------------Ecchhhh
Confidence 399999999999999 7999999998 578999888765433 23344 56899999998 4433344
Q ss_pred ---HHHHHHHHHhhh--hccCceEE--------------EEEECCeeeeEEEcCCCCCHHHHHHHHhCh---hhhhcccc
Q 008397 77 ---YTKIVDLLSRMA--IHHTNVSF--------------SCRKHGAARADVHSIATSSRLDSIRTVYGV---SVASNLVQ 134 (567)
Q Consensus 77 ---~~~I~~~v~~yA--l~~p~V~F--------------~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~---~~~~~l~~ 134 (567)
..+|.++|.+|| +.+| |.| .+.+++ +.+|.++++.-..+.....|+. .....|..
T Consensus 187 fl~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~--~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ 263 (624)
T 2ioq_A 187 FLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA--QALWTRNKSEITDEEYKEFYKHIAHDFNDPLTW 263 (624)
T ss_dssp GGCHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCC--SCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCC
T ss_pred cchHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC--ccceEecCccchHHHHHHHHHhhccchhcCeEE
Confidence 789999999999 9999 999 333333 5566665543333467777765 33455777
Q ss_pred ccccccCCCCCcceEEEEEEeCCC------CC-CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcC
Q 008397 135 LEASEYNDSSSFVFKMDGYVSNSN------YV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 207 (567)
Q Consensus 135 v~~~~~~~~~~~~~~v~G~is~~~------~~-~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~ 207 (567)
+..+. + +.+.++|++..|. +. .++..+.+|||||+|.+.. ..++|.. +.++...++
T Consensus 264 ih~~~---e--g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~---------~~llP~~---l~fv~gvVD 326 (624)
T 2ioq_A 264 SHNRV---E--GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA---------EQFMPNY---LRFVRGLID 326 (624)
T ss_dssp EEEEE---E--SSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEEE---------CSSSCTT---STTCEEEEE
T ss_pred EEecc---c--ceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEeecch---------hccchhh---hhhEEEEEC
Confidence 76665 1 3689999999987 22 2367899999999999866 6777763 224555699
Q ss_pred CCceeeccCCCCCeEecCChHHHHHHHHHHHHH
Q 008397 208 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 240 (567)
Q Consensus 208 p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~ 240 (567)
++.+||||. ||. +.++.++..|++.+.+
T Consensus 327 s~dl~lNVS---RE~--LQ~~~~l~~I~~~l~k 354 (624)
T 2ioq_A 327 SSDLPLNVS---REI--LQDSTVTRNLRNALTK 354 (624)
T ss_dssp ESSSCTTCC---HHH--HHHSSHHHHHHHHHHH
T ss_pred HhhCCCccC---chh--hhhhHHHHHHHHHHHH
Confidence 999999994 554 3445555555555443
No 16
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.32 E-value=6e-13 Score=148.65 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=134.5
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccc----cCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKAC----AAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~----a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
||+++.|++++| ++|+|+||+.++ .||.....+|... ..++ ..+.||+|++. |+....|
T Consensus 144 FGvGfySaf~vA--dkV~V~Sr~~~~-~~~~W~s~gg~~t--i~~~~~~~~~~~GT~I~L~------------Lk~d~~E 206 (666)
T 2o1u_A 144 FGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS--VIADPRGNTLGRGTTITLV------------LKEEASD 206 (666)
T ss_dssp --CTTGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCCE--EEECTTCCSSSSEEEEEEE------------ECTTTTT
T ss_pred CCcHHHhHHHhc--CEEEEEEeeCCC-ceEEEEEeCCeEE--EEecccCCCCCCCeEEEEE------------Eccchhh
Confidence 688888887776 799999999986 5888887776653 2332 35899999997 5544445
Q ss_pred ---HHHHHHHHHhhh--hccCceEEEEE-------------ECCeeeeEEEcCCCCCHHHHHHHHhCh---hhhhccccc
Q 008397 77 ---YTKIVDLLSRMA--IHHTNVSFSCR-------------KHGAARADVHSIATSSRLDSIRTVYGV---SVASNLVQL 135 (567)
Q Consensus 77 ---~~~I~~~v~~yA--l~~p~V~F~l~-------------~~~~~~~~l~t~~~~s~~~~i~~i~G~---~~~~~l~~v 135 (567)
..+|.++|.+|| |.+| |.|... ..++.+.+|..+++.-..+.+..+|+. .....|..+
T Consensus 207 fle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~i 285 (666)
T 2o1u_A 207 YLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYI 285 (666)
T ss_dssp SSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEE
T ss_pred hccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEE
Confidence 679999999999 9999 888331 111224555555543334478888873 334556666
Q ss_pred cccccCCCCCcceEEEEEEeCCC------CCC----CCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEE
Q 008397 136 EASEYNDSSSFVFKMDGYVSNSN------YVA----KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIV 205 (567)
Q Consensus 136 ~~~~~~~~~~~~~~v~G~is~~~------~~~----~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~ 205 (567)
..+. + +.+.++|++..|. +.+ ++..+.+|||||+|.+.. ..++|. | +.||...
T Consensus 286 h~~~---e--g~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~---------~~llP~--~-l~FvkGv 348 (666)
T 2o1u_A 286 HFTA---E--GEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDF---------HDMMPK--Y-LNFVKGV 348 (666)
T ss_dssp EEEE---C--SSSCEEEEEEECSSCCC------------CEEEEETTEEEESCC---------CTTSCG--G-GTTCEEE
T ss_pred Eecc---c--CcEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCch---------hhhhHH--H-HHHeeee
Confidence 6554 2 4688899998886 332 366789999999999865 566765 2 3346668
Q ss_pred cCCCceeeccCCCCCeEecCChHHHHHHHHHHHHH
Q 008397 206 LPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 240 (567)
Q Consensus 206 i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~ 240 (567)
++++.+|+||. ||. +.++.++..|++.+.+
T Consensus 349 VDs~dLplNVS---RE~--LQ~~~~l~~I~~~l~k 378 (666)
T 2o1u_A 349 VDSDDLPLNVS---RET--LQQHKLLKVIRKKLVR 378 (666)
T ss_dssp EEESSSCSSSC---HHH--HHTCHHHHHHHHHHHH
T ss_pred eCHhhCCCccc---chh--hccCHHHHHHHHHHHH
Confidence 99999999995 554 3445555555555433
No 17
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.00 E-value=2.6e-10 Score=112.26 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeecccccc---ccCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---CAAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~---~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
+||||+||+|++.|| +|+|+||+.+ ..||++...+|... ...+ .+.+.||+|+|+ ||+...|
T Consensus 123 iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~-~v~~~~~~~~~~GT~I~v~------------Lk~~~~E 188 (228)
T 3t0h_A 123 IGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSF-TVRTDTGEPMGRGTKVILH------------LKEDQTE 188 (228)
T ss_dssp GGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEE-EEEECCSSCCSSEEEEEEE------------ECGGGGG
T ss_pred CCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceE-EEeecCCCCCCCCcEEEEE------------ECCchhh
Confidence 599999999999999 8999999987 57999999877543 1233 467899999999 8877777
Q ss_pred H---HHHHHHHHhhh--hccC
Q 008397 77 Y---TKIVDLLSRMA--IHHT 92 (567)
Q Consensus 77 ~---~~I~~~v~~yA--l~~p 92 (567)
+ .+|.++|.+|| |.+|
T Consensus 189 ~~e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 189 YLEERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp GGSHHHHHHHHHHHSTTCSSC
T ss_pred hhhHHHHHHHHHHHHhhCCCC
Confidence 7 89999999999 8887
No 18
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.92 E-value=8.9e-10 Score=107.82 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=76.4
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccccc--cccCCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
.||||++|+++.++| +++|+++..+ ..|+..|++|......+ +.+.+.||+|++. |.|++|.++...++
T Consensus 113 gGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g~~~~~GT~V~F~------Pd~~~F~~~~~~~~ 184 (220)
T 4duh_A 113 GGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW------PSLETFTNVTEFEY 184 (220)
T ss_dssp ----CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEEECSCCEEEEEEE------ECTTTCCSSCSCCH
T ss_pred cCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceeccccCCCCcEEEEE------ECHHHhCCcccCCH
Confidence 499999999999999 7999998765 57999999999874332 3457899999974 88888876657789
Q ss_pred HHHHHHHHhhhhccCceEEEEEEC
Q 008397 78 TKIVDLLSRMAIHHTNVSFSCRKH 101 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p~V~F~l~~~ 101 (567)
..|.+.++++|+.+|+|+|+|...
T Consensus 185 ~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 185 EILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEET
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcc
Confidence 999999999999999999999875
No 19
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=98.85 E-value=1.7e-09 Score=107.74 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=64.5
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeec-ccc-ccccCCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVME-SEP-KACAAVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~-~~~-~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
+||||++|+|+..|| +|+|+||+.+ ..||++...+|... ..+ .+.+.+.||+|+|+ +|..+..-.|.
T Consensus 151 iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~---------LK~~~~e~~e~ 220 (256)
T 3o0i_A 151 IGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH---------LKEDQTEYLEE 220 (256)
T ss_dssp GGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE---------ECGGGGGGGCH
T ss_pred cCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCCCCCCCCcEEEEE---------EcCcchhhccH
Confidence 599999999999999 8999999986 57999998876543 111 23467899999999 33333333444
Q ss_pred HHHHHHHHhhh--hccCc
Q 008397 78 TKIVDLLSRMA--IHHTN 93 (567)
Q Consensus 78 ~~I~~~v~~yA--l~~p~ 93 (567)
.+|.++|.+|| |.+|-
T Consensus 221 ~~I~~iv~k~s~~l~~PI 238 (256)
T 3o0i_A 221 RRIKEIVKKHSQFIGYPI 238 (256)
T ss_dssp HHHHHHHHHHCTTCSSCE
T ss_pred HHHHHHHHHHHhhCCCCe
Confidence 89999999999 99883
No 20
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.67 E-value=1.7e-08 Score=98.97 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=75.4
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCC-eeccccc---ccc-CCCCcEEEEcccccccHHHHHhhcCch
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK---ACA-AVKGTQIMVENLFYNMIARRKTLQNSS 74 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G-~~~~~~~---~~a-~~~GTtV~V~dLFyN~PvRrk~lks~~ 74 (567)
.||||++++++.++| +++|+++..+ ..|+..|++| ..+.+.+ +++ .+.||+|++. |.+.+| ++..
T Consensus 117 gGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F~------PD~~iF-~~~~ 187 (226)
T 4emv_A 117 GGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFM------PDATIF-STTD 187 (226)
T ss_dssp -CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEECCTTCCEEEEEEE------ECTTTC-SCCC
T ss_pred cccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEecccCCCCCCeEEEEE------ECHHHc-CCCC
Confidence 499999999999999 7999999855 5799999988 8764322 343 6799999985 666665 5556
Q ss_pred HHHHHHHHHHHhhhhccCceEEEEEEC
Q 008397 75 DDYTKIVDLLSRMAIHHTNVSFSCRKH 101 (567)
Q Consensus 75 ~e~~~I~~~v~~yAl~~p~V~F~l~~~ 101 (567)
-++..|.+.++++|..+|+|+|+|...
T Consensus 188 ~~~~~l~~rlrelA~ln~gv~i~l~de 214 (226)
T 4emv_A 188 FKYNTISERLNESAFLLKNVTLSLTDK 214 (226)
T ss_dssp CCHHHHHHHHHHHHHHHCSCEEEEEET
T ss_pred cCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 688899999999999999999999874
No 21
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.64 E-value=2.1e-08 Score=106.42 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=73.1
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeecccccc---ccCCCCcEEEEcccccccHHHHHhhcCc--h
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---CAAVKGTQIMVENLFYNMIARRKTLQNS--S 74 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~---~a~~~GTtV~V~dLFyN~PvRrk~lks~--~ 74 (567)
.||||+||+++.++| +++|+|+...+..+|+..|.+|.......+ +..+.||+|++. |.|++| ++. .
T Consensus 132 gGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~~iF-~~~ef~ 204 (400)
T 1zxm_A 132 GGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDLSKF-KMQSLD 204 (400)
T ss_dssp SCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECGGGG-TCSSCC
T ss_pred CCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEEEEE------EChHHh-Cceeec
Confidence 599999999999996 799999987778899999998844322332 335689999988 888877 433 2
Q ss_pred HHHHH-HHHHHHhhhhccCceEEEEEE
Q 008397 75 DDYTK-IVDLLSRMAIHHTNVSFSCRK 100 (567)
Q Consensus 75 ~e~~~-I~~~v~~yAl~~p~V~F~l~~ 100 (567)
.+..+ |.+.++++|+.||+|+|+|..
T Consensus 205 ~~~~~~l~~rlrelA~lnpgv~i~l~d 231 (400)
T 1zxm_A 205 KDIVALMVRRAYDIAGSTKDVKVFLNG 231 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEETT
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 22222 889999999999999999963
No 22
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.47 E-value=8.6e-06 Score=86.30 Aligned_cols=220 Identities=14% Similarity=0.121 Sum_probs=132.2
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccccc---ccc-CCCCcEEEEcccccccHHHHHhhcCchH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA-AVKGTQIMVENLFYNMIARRKTLQNSSD 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~---~~a-~~~GTtV~V~dLFyN~PvRrk~lks~~~ 75 (567)
.||+|++++++.++| +|+|+++..+ ..|+..|.+|..+.+.+ ++. ...||+|++. |.+.+| ++..-
T Consensus 128 gGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~------PD~~iF-~~~~f 198 (408)
T 3lnu_A 128 GGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFW------ADPKYF-DTPKF 198 (408)
T ss_dssp ------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEECCTTCCEEEEEEE------ECGGGS-SCSCC
T ss_pred CCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccCcCCCCCcEEEEE------ECHHHh-CCCCc
Confidence 499999999999999 7999999755 47999999999864332 443 5799999984 777776 66667
Q ss_pred HHHHHHHHHHhhhhccCceEEEEEECCe-eeeEEEcCCCCCHHHHHHHHhChhhhhccc---c-ccccccCCCCCcceEE
Q 008397 76 DYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVSVASNLV---Q-LEASEYNDSSSFVFKM 150 (567)
Q Consensus 76 e~~~I~~~v~~yAl~~p~V~F~l~~~~~-~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~---~-v~~~~~~~~~~~~~~v 150 (567)
++..|.+.++++|..+|+|+|+|..... .+..|+..+ .+.+-+..+-... ..+ . +.... . ....+
T Consensus 199 ~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~yeg--Gi~~yv~~l~~~k---~~~~~~~~~~~~~---~--~~~~v 268 (408)
T 3lnu_A 199 NVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFEN--GLRDYLKGEMAEH---EMLPADLFVGSLK---K--DTEIV 268 (408)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEECSS--SHHHHHHHHTTTS---CCEEEEEEEEEEE---C--SSCEE
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEcCc--hHHHHHHHHhcCC---CcCCCCCeEeeEe---c--CceeE
Confidence 8899999999999999999999987432 134555443 3666666555432 111 1 11111 1 11333
Q ss_pred EEEEeC-CCCCCCCceEEEEEcCeEeCCc---------hHHHHHHHHhhc--cCCCC---------CCcEEEEEEEcCCC
Q 008397 151 DGYVSN-SNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFPKA---------SKPFIYMSIVLPPE 209 (567)
Q Consensus 151 ~G~is~-~~~~~~k~~q~lFIN~R~V~~~---------~l~kaI~~~y~~--~lp~~---------~~P~~~L~i~i~p~ 209 (567)
+--+.- .++ ...++-|+|+-+=..- +|.++|++.... ++.++ ..-+++|++.+|--
T Consensus 269 e~Al~~~~~~---~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~~~l~~~DiregL~aviSvkv~~P 345 (408)
T 3lnu_A 269 DWAAGWVPEG---ELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDP 345 (408)
T ss_dssp EEEEEECSSS---CCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHTTEEEEEEEECSSC
T ss_pred EEEEEEcCCC---CeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCCCCCCHHHHhhCeEEEEEEEcCCC
Confidence 333331 122 3468999999875542 355555543332 22322 23478999999865
Q ss_pred ceeeccCCCCCeEecCC-hHHHHHHHHHHHHHHHhcC
Q 008397 210 HVDVNVHPTKREVSLLN-QELIVEKIQSAVELKLRQS 245 (567)
Q Consensus 210 ~vDVNvhPtK~eV~F~~-e~~I~~~i~~~i~~~L~~~ 245 (567)
..+ --||...-=.. ...+-..+.+.+..+|...
T Consensus 346 qFe---gQTK~kL~n~ev~~~V~~~v~~~l~~~l~en 379 (408)
T 3lnu_A 346 QFS---GQTKERLSSRQAAGFIEGAAHDAFSLYLNQN 379 (408)
T ss_dssp CEE---STTSCEECCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccc---CcccccccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 554 25665443221 1233455566666666443
No 23
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.43 E-value=1.3e-07 Score=90.95 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=73.0
Q ss_pred HHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeeccccc--cccCCCCcEEEEcccccccHHHHHhhcCchHHHHHHHHHH
Q 008397 8 LASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLL 84 (567)
Q Consensus 8 LaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I~~~v 84 (567)
++++.++| +|+|+|+..+. +|+..|++|....+.+ +.+.+.||+|++. |.|++|+++...++..|.+.+
T Consensus 93 ~SvVNALS~~l~v~v~r~g~--~~~~~f~~G~~~~~l~~i~~~~~~GT~V~F~------Pd~~iF~~~~~~~~~~l~~rl 164 (198)
T 3ttz_A 93 SSVVNALSQDLEVYVHRNET--IYHQAYKKGVPQFDLKEVGTTDKTGTVIRFK------ADGEIFTETTVYNYETLQQRI 164 (198)
T ss_dssp TCHHHHTEEEEEEEEEETTE--EEEEEEETTEESSCCEEEEECSCCEEEEEEE------ECTTTCCSCCCCCHHHHHHHH
T ss_pred eEehhhhcCeEEEEEEECCc--EEEEEEeCCEECCCceeccCCCCCCcEEEEE------ECHHHhccCCccCHHHHHHHH
Confidence 56778886 79999988664 7999999999864332 3456899999986 999998888888999999999
Q ss_pred HhhhhccCceEEEEEEC
Q 008397 85 SRMAIHHTNVSFSCRKH 101 (567)
Q Consensus 85 ~~yAl~~p~V~F~l~~~ 101 (567)
+++|+.||+|+|+|.+.
T Consensus 165 relA~ln~gv~i~l~de 181 (198)
T 3ttz_A 165 RELAFLNKGIQITLRDE 181 (198)
T ss_dssp HHHHHHSTTCEEEEEEC
T ss_pred HHHhhcCCCCEEEEEee
Confidence 99999999999999874
No 24
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.17 E-value=9.6e-08 Score=106.43 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=93.3
Q ss_pred CCCcchhHHHHhhhcce------EEEeecCCCCCeEEEEE----eCCeecc---ccccccCCCCcEEEEcccccccHHHH
Q 008397 1 MGFRGEALASMTYVGHV------TVTTITKGHLHGYRVSY----RDGVMES---EPKACAAVKGTQIMVENLFYNMIARR 67 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l------~I~Tk~~~~~~g~~~~~----~~G~~~~---~~~~~a~~~GTtV~V~dLFyN~PvRr 67 (567)
.|++|.+|+++.++++. +|.|+..+...||++.+ .+|.... ...+++...||+|+|. |.
T Consensus 110 ~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~--f~------ 181 (621)
T 2q2e_B 110 RGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE--MR------ 181 (621)
T ss_dssp CSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE--CS------
T ss_pred CCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE--ec------
Confidence 38999999999999865 89999887778999988 5443321 2456677899999999 32
Q ss_pred HhhcCchHH--HHHHHHHHHhhhhccCceEEEEEECCeeeeEEEcCCC-CCHHHHHH----HHhChhhhhcccccccccc
Q 008397 68 KTLQNSSDD--YTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIAT-SSRLDSIR----TVYGVSVASNLVQLEASEY 140 (567)
Q Consensus 68 k~lks~~~e--~~~I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~-~s~~~~i~----~i~G~~~~~~l~~v~~~~~ 140 (567)
....+ +..|.+.+++||+.+|+|+|+|.+++ ...+++.+. ..+.++.. .+||......++.+.+.
T Consensus 182 ----~~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~--~~~~~~~gg~~~L~~~~~~i~p~~~G~~~~~~eval~~~-- 253 (621)
T 2q2e_B 182 ----AAYVKGRRQSIYEYLKATAIVNPHARITLIDPD--GNEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYT-- 253 (621)
T ss_dssp ----CCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTT--SCCEEEECCCCCCCCCCCCCCCCSTTCCHHHHHHHHHHC--
T ss_pred ----CccchHHHHHHHHHHHHHHhhCCCCEEEEEECC--ceEEEeCCcccchhcccccccCCceeeccCeEEEEEeeC--
Confidence 12223 36799999999999999999999876 345565553 33333333 46887666556666643
Q ss_pred CCCCCcceEEEEEEeCC
Q 008397 141 NDSSSFVFKMDGYVSNS 157 (567)
Q Consensus 141 ~~~~~~~~~v~G~is~~ 157 (567)
.++++.||+++.
T Consensus 254 -----~~~~i~sFvN~i 265 (621)
T 2q2e_B 254 -----ERQKLAPFLRYS 265 (621)
T ss_dssp -----C-----CTTSSS
T ss_pred -----CCeEEEEEeCCc
Confidence 457888888773
No 25
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.16 E-value=2.9e-07 Score=101.06 Aligned_cols=137 Identities=11% Similarity=0.167 Sum_probs=96.9
Q ss_pred CCCcchhHHHHhhhcc------eEEEeecCCCCCeEEEEE--e----CCeecccccccc---CCCCcEEEEcccccccHH
Q 008397 1 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKACA---AVKGTQIMVENLFYNMIA 65 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~------l~I~Tk~~~~~~g~~~~~--~----~G~~~~~~~~~a---~~~GTtV~V~dLFyN~Pv 65 (567)
.|++|.+|+++..+++ ++|.|+..+...++++.+ . +|... ...+++ ...||+|+|.
T Consensus 105 ~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-------- 175 (530)
T 2zbk_B 105 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-------- 175 (530)
T ss_dssp SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEE-EEEEEECCSSCCEEEEEEE--------
T ss_pred CCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccc-cccccCCCCCCCCcEEEEE--------
Confidence 3899999999999987 999999877655666554 2 45444 344443 6789999999
Q ss_pred HHHhhcCchHHH-HHHHHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCC-----HHHHHHHHhChhhhhccccccccc
Q 008397 66 RRKTLQNSSDDY-TKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSS-----RLDSIRTVYGVSVASNLVQLEASE 139 (567)
Q Consensus 66 Rrk~lks~~~e~-~~I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s-----~~~~i~~i~G~~~~~~l~~v~~~~ 139 (567)
|++...+. .+|.+++++||+.||+++|++..++ ...+.+.+..+ ..+.+...+|..+...+..++.+.
T Consensus 176 ----l~~~~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~--~~~~~~~~~~~~lp~~~~~~~~~~~Gi~~~~~l~~~~~~~ 249 (530)
T 2zbk_B 176 ----IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPE--GNVTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLK 249 (530)
T ss_dssp ----EECCHHHHHHHHHHHHHHHHHHCTTCCEEEECTT--SCEEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHHTTCS
T ss_pred ----eccchhhHHHHHHHHHHHHHHHCCCcEEEEEECC--CeEEEecCccccccCCcceeccCCCChhHHHHHHHHhccC
Confidence 22333445 7999999999999999999999877 34455554332 233455567777766666565554
Q ss_pred cCCCCCcceEEEEEEeCCC
Q 008397 140 YNDSSSFVFKMDGYVSNSN 158 (567)
Q Consensus 140 ~~~~~~~~~~v~G~is~~~ 158 (567)
..+++.||+++..
T Consensus 250 ------~~~~l~~fl~~~f 262 (530)
T 2zbk_B 250 ------RDYTIKEFLVNEF 262 (530)
T ss_dssp ------SCCBHHHHHHTTS
T ss_pred ------CCceeHhhhcCcc
Confidence 4457888888763
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.11 E-value=6.4e-07 Score=97.11 Aligned_cols=136 Identities=11% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCCcchhHHHHhhhcc------eEEEeecCCCCCeEEEEEe------CCeeccccccc---cCCCCcEEEEcccccccHH
Q 008397 1 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSYR------DGVMESEPKAC---AAVKGTQIMVENLFYNMIA 65 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~------l~I~Tk~~~~~~g~~~~~~------~G~~~~~~~~~---a~~~GTtV~V~dLFyN~Pv 65 (567)
.|++|..|+++..+++ ++|.|+..+...++++.+. +|... +..++ +...||+|+|. |
T Consensus 106 ~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l------ 177 (471)
T 1mu5_A 106 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-I------ 177 (471)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEE-EEEEEECCTTCCEEEEEEE-E------
T ss_pred CCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccc-ccccccCCCCCCCEEEEEE-E------
Confidence 3789999999999987 9999998776556666542 45554 33444 56799999998 2
Q ss_pred HHHhhcCchHHH-HHHHHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCC-----HHHHHHHHhChhhhhccccccccc
Q 008397 66 RRKTLQNSSDDY-TKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSS-----RLDSIRTVYGVSVASNLVQLEASE 139 (567)
Q Consensus 66 Rrk~lks~~~e~-~~I~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s-----~~~~i~~i~G~~~~~~l~~v~~~~ 139 (567)
++...+. .+|.+.++++|+.+|+++|++..+++ ..+.+.+..+ ........+|.+....+..+..+.
T Consensus 178 -----~~~~~e~~~~I~~~l~~~al~~p~v~i~l~~~~~--~~~~~~r~~~~lp~~~~~~~p~~~G~~l~~~~~~~~~~~ 250 (471)
T 1mu5_A 178 -----PGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEG--NVTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLK 250 (471)
T ss_dssp -----ECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTC--CEEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHSTTCS
T ss_pred -----cCCcchHHHHHHHHHHHHHhHCCCeEEEEEECCc--eEEEecccccccCCccceeecCCCchhHHHHHHHHHhcC
Confidence 2222333 78999999999999999999998773 3455444321 122344557766666665565554
Q ss_pred cCCCCCcceEEEEEEeCC
Q 008397 140 YNDSSSFVFKMDGYVSNS 157 (567)
Q Consensus 140 ~~~~~~~~~~v~G~is~~ 157 (567)
..+++.||++..
T Consensus 251 ------~~~~~~~fl~~~ 262 (471)
T 1mu5_A 251 ------RDYTIKEFLVNE 262 (471)
T ss_dssp ------SCCBHHHHHTTS
T ss_pred ------CCcchHHhhhcc
Confidence 456888988875
No 27
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.03 E-value=3.6e-06 Score=83.08 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=60.9
Q ss_pred CCCcchhHHHHhhh-cceEEEeecCCC--CCeEEEEEeCCeecccccc-ccCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYV-GHVTVTTITKGH--LHGYRVSYRDGVMESEPKA-CAAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~V-S~l~I~Tk~~~~--~~g~~~~~~~G~~~~~~~~-~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
+|++|+++.|.-.+ ++|+|+||+.++ ..||++.+.++... ...+ .+.+.||+|+|. | + +.|++++ |
T Consensus 140 iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~~~~~~~GT~V~v~-L--k-~~~~~~~-----e 209 (235)
T 2ior_A 140 IGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADITKEDRGTEITLH-L--R-EGEDEFL-----D 209 (235)
T ss_dssp HTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEEECCCSCEEEEEEE-E--C-TTCGGGG-----C
T ss_pred CCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEeeCCCCCCCEEEEEE-E--c-CchhhhC-----C
Confidence 48999999776444 579999999987 78999988765432 1222 366899999996 2 2 3344443 5
Q ss_pred HHHHHHHHHhhh--hccC
Q 008397 77 YTKIVDLLSRMA--IHHT 92 (567)
Q Consensus 77 ~~~I~~~v~~yA--l~~p 92 (567)
..+|.++|++|| |.+|
T Consensus 210 ~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 210 DWRVRSIISKYSDHIALP 227 (235)
T ss_dssp HHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 789999999999 8887
No 28
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=97.52 E-value=9.7e-05 Score=72.84 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=59.3
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccc--cccCCCCcEEEEcccccccHHHHHhhcCchH---
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSD--- 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~--- 75 (567)
|||+++|++++| .+|+|+||+.++ .||.....+|.....+. ....+.||+|+|. |+....
T Consensus 131 fGiG~~S~f~va--~~v~V~Sr~~~~-~~~~w~~~gg~~~i~~~~~~~~~~~GT~I~l~------------Lk~~~~~~l 195 (236)
T 2gqp_A 131 FGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFSVIADPRGNTLGRGTTITLV------------LKEEASDYL 195 (236)
T ss_dssp TTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCEEEEECTTCSCSSSEEEEEEE------------ECGGGGGGG
T ss_pred CCcchhhHhhcC--CEEEEEEeCCCC-ceEEEEEeCCEEEEEeccCCCCCCCCeEEEEE------------ECCcchhhC
Confidence 699999999888 799999999986 58888777765532211 1246799999997 222222
Q ss_pred HHHHHHHHHHhhhhccC-ceEEEEE
Q 008397 76 DYTKIVDLLSRMAIHHT-NVSFSCR 99 (567)
Q Consensus 76 e~~~I~~~v~~yAl~~p-~V~F~l~ 99 (567)
|..+|.++|.+||-+-+ -|.+...
T Consensus 196 e~~~i~~lv~~~s~~i~~pI~~~~~ 220 (236)
T 2gqp_A 196 ELDTIKNLVKKYSQFINFPIYVWSS 220 (236)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred hHHHHHHHHHHHhhhCCCceEEeee
Confidence 56899999999994432 2454433
No 29
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.29 E-value=0.00025 Score=71.02 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeecccccc---ccCCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---CAAVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~---~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
|..|..+.|...++ +|+|+||+.++ .||.+...+|... ...+ .+.+.||+|+|. |. +.++++ .|.
T Consensus 160 G~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~-~i~~~~~~~~~~GT~I~l~-Lk---~~~~e~-----~e~ 228 (264)
T 1yc1_A 160 GQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSF-TVRTDTGEPMGRGTKVILH-LK---EDQTEY-----LEE 228 (264)
T ss_dssp GGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEE-EEEECCSSCCSSEEEEEEE-EC---GGGGGG-----GSH
T ss_pred CCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceE-EEeecCCCCCCCCeEEEEE-EC---Cchhhh-----hhH
Confidence 66777777766666 79999999875 5888888765432 2223 246899999998 21 112333 367
Q ss_pred HHHHHHHHhhhhcc
Q 008397 78 TKIVDLLSRMAIHH 91 (567)
Q Consensus 78 ~~I~~~v~~yAl~~ 91 (567)
.+|.++|.+||-+-
T Consensus 229 ~~i~~lv~k~s~fi 242 (264)
T 1yc1_A 229 RRIKEIVKKHSQFI 242 (264)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhC
Confidence 89999999999554
No 30
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.26 E-value=0.00026 Score=68.87 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCeec-cccc--cccCCCCcEEEEcccccccHHHHHhhcCchHHH
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVME-SEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDY 77 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~~~-~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~ 77 (567)
|..|..+.|...++ +|+|+||+.++ .||.+...+|... ..+. +.+.+.||+|+|. |. +.+++++ |.
T Consensus 118 G~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~-Lk---~~~~~~~-----e~ 187 (220)
T 2wer_A 118 GQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF-LK---DDQLEYL-----EE 187 (220)
T ss_dssp GGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEECSSSCCCSSEEEEEEE-EC---TTCGGGG-----CH
T ss_pred CccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecccCCCCCCCCeEEEEE-EC---cchHHhC-----CH
Confidence 55666666655554 79999999874 5888888765432 1111 2356899999998 32 1233333 66
Q ss_pred HHHHHHHHhhhhccC-ceEE
Q 008397 78 TKIVDLLSRMAIHHT-NVSF 96 (567)
Q Consensus 78 ~~I~~~v~~yAl~~p-~V~F 96 (567)
.+|.++|.+||.+-+ -|.+
T Consensus 188 ~~i~~~v~~~a~~l~~PI~~ 207 (220)
T 2wer_A 188 KRIKEVIKRHSEFVAYPIQL 207 (220)
T ss_dssp HHHHHHHHHHCTTCCSCEEE
T ss_pred HHHHHHHHHHHhcCCCceEE
Confidence 899999999996543 4444
No 31
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.85 E-value=0.001 Score=66.69 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccc--cccCCCCcEEEEcccccccHHHHHhhcCchHHHH
Q 008397 1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYT 78 (567)
Q Consensus 1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~--~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~ 78 (567)
||+++.|++++| .+|+|+||+.++ .||.....+|.....+. ......||+|++. | . ..+..++ +..
T Consensus 127 fGvGfySaf~va--~~v~V~Sk~~~~-~~~~w~s~gg~~~i~~~~~~~~~~~GT~I~L~-L--k-~d~~e~l-----e~~ 194 (269)
T 1qy5_A 127 FGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFSVIADPRGNTLGRGTTITLV-L--K-EEASDYL-----ELD 194 (269)
T ss_dssp TTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEECSSCEEEEECTTCSCSSSEEEEEEE-E--C-GGGGGGG-----SHH
T ss_pred ccccHHHHhhcc--ceEEEEEEecCC-cEEEEEEeCCEEEEEeccCCCcCCCCeEEEEE-E--c-ccchhhh-----hHH
Confidence 567776666655 589999999975 68887776665532221 1245799999996 1 0 0011122 456
Q ss_pred HHHHHHHhhhhccC-ceEEEEE
Q 008397 79 KIVDLLSRMAIHHT-NVSFSCR 99 (567)
Q Consensus 79 ~I~~~v~~yAl~~p-~V~F~l~ 99 (567)
+|.++|.+|+-+-+ -|.+...
T Consensus 195 ~i~~lvkkys~fi~~PI~l~~~ 216 (269)
T 1qy5_A 195 TIKNLVKKYSQFINFPIYVWSS 216 (269)
T ss_dssp HHHHHHHTTCTTCSSCEEEEEE
T ss_pred HHHHHHHhhhcccceeeEEeee
Confidence 89999999995443 4555443
No 32
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.011 Score=66.14 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCcchh-HHHHhhhcceEEEeecCCCCCeEEEEEeCCeecccccc----ccCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 2 GFRGEA-LASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKA----CAAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 2 GFRGEA-LaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~----~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
|..|-. ++|++.+++|+|+||+.++ .||.....+|... ...+ ...+.||+|++. |+....|
T Consensus 118 GqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~-ti~~~~~~~~~~~GT~I~L~------------Lk~d~~e 183 (677)
T 2cg9_A 118 GQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSF-TVTLDEVNERIGRGTILRLF------------LKDDQLE 183 (677)
T ss_dssp CCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEE-EEEECCSSCCCSSEEEEEEE------------ECTTGGG
T ss_pred CCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceE-EEeecCCCCCCCCCeEEEEE------------Ecchhhc
Confidence 444444 4556666789999999985 5888888766432 1222 356899999997 5544444
Q ss_pred ---HHHHHHHHHhhhhccC-ceEE
Q 008397 77 ---YTKIVDLLSRMAIHHT-NVSF 96 (567)
Q Consensus 77 ---~~~I~~~v~~yAl~~p-~V~F 96 (567)
..+|.++|.+||-+-+ -|.+
T Consensus 184 ~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 184 YLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp GGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred cccHHHHHHHHHHHHhhCCCCeEE
Confidence 7899999999996654 4544
No 33
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.43 E-value=0.034 Score=55.79 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=60.5
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCCe-ecccccc--ccCCCCcEEEEcccccccHHHHHhhcCchHH
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPKA--CAAVKGTQIMVENLFYNMIARRKTLQNSSDD 76 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G~-~~~~~~~--~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e 76 (567)
.|..|-.+.|.-.|| +|+|+||+.++ .||.....+|. ....+.+ .....||+|++. |+....|
T Consensus 138 IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~------------Lked~~e 204 (281)
T 3peh_A 138 IGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPRGATLKRGTRISLH------------LKEDATN 204 (281)
T ss_dssp TTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTTCSTTSSEEEEEEE------------ECGGGGG
T ss_pred ccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCCCCCCCCCeEEEEE------------ECCchhh
Confidence 488899999988887 59999999875 68888776654 2111211 245799999997 4433333
Q ss_pred ---HHHHHHHHHhhhhccC-ceEEEEEE
Q 008397 77 ---YTKIVDLLSRMAIHHT-NVSFSCRK 100 (567)
Q Consensus 77 ---~~~I~~~v~~yAl~~p-~V~F~l~~ 100 (567)
-.+|.++|.+|+-.-| -|.+...+
T Consensus 205 ~le~~~ik~ivkkys~fi~~pI~l~~~k 232 (281)
T 3peh_A 205 LLNDKKLMDLISKYSQFIQFPIYLLHEN 232 (281)
T ss_dssp GGSHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred hcCHHHHHHHHHHhhccCCcceEEeeee
Confidence 4799999999996543 45555443
No 34
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.96 E-value=0.026 Score=55.43 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCC-eeccccc-cccCCCCcEEEEcccccccHHHHHhhcCchH--
Q 008397 1 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK-ACAAVKGTQIMVENLFYNMIARRKTLQNSSD-- 75 (567)
Q Consensus 1 ~GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G-~~~~~~~-~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~-- 75 (567)
.|..|..+.|.-.|| +|+|+||+.++ .+|...-.+| ...-++. ......||+|++. ||....
T Consensus 130 IGqFGvGfySaf~vadkv~V~Sk~~~~-~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~------------lk~d~~e~ 196 (239)
T 3nmq_A 130 IGQFGVGFYSAYLVAEKVVVITKHNDD-EQYAWESSAGGSFTVRADHGEPIGRGTKVILH------------LKEDQTEY 196 (239)
T ss_dssp GGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSCCSSEEEEEEE------------ECGGGGGG
T ss_pred ccccCcccccccccCCEEEEEEeeCCC-ceeEEEECCCCcEEEEecCCCcCCCCCEEEEE------------ECCChHHh
Confidence 378899999999998 69999999754 5787766544 3221111 1234789999998 443222
Q ss_pred -HHHHHHHHHHhhhhccC-ceEE
Q 008397 76 -DYTKIVDLLSRMAIHHT-NVSF 96 (567)
Q Consensus 76 -e~~~I~~~v~~yAl~~p-~V~F 96 (567)
+-.+|.++|.+|+-+-| -|.+
T Consensus 197 l~~~~i~~lv~kys~fi~~pI~~ 219 (239)
T 3nmq_A 197 LEERRVKEVVKKHSQFIGYPITL 219 (239)
T ss_dssp GSHHHHHHHHHHHCTTCSSCEEE
T ss_pred cCHHHHHHHHHHHHhccCCceEE
Confidence 34689999999996543 3443
No 35
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=92.19 E-value=0.2 Score=53.15 Aligned_cols=91 Identities=8% Similarity=0.035 Sum_probs=64.2
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeCC--eecccc--cccc-CCCCcEEEEcccccccHHHHHhhcCc--
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG--VMESEP--KACA-AVKGTQIMVENLFYNMIARRKTLQNS-- 73 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~G--~~~~~~--~~~a-~~~GTtV~V~dLFyN~PvRrk~lks~-- 73 (567)
|..|..++..-++| +++|+++...+..-|+..|.+| +.. .+ .++. ...||+|+.. |-...| .+.
T Consensus 145 GLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~-~p~i~~~~~~~tGT~V~F~------PD~~iF-~~~~f 216 (418)
T 1pvg_A 145 GRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICH-PPKITSYKKGPSYTKVTFK------PDLTRF-GMKEL 216 (418)
T ss_dssp CCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEEC-CCEEEECCSSCCEEEEEEE------ECGGGG-TCSSC
T ss_pred CccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccC-CCeecccCCCCCceEEEEE------EChHHc-CCccc
Confidence 78899999999999 6999999754556799999887 443 22 2232 4689999964 332222 211
Q ss_pred h-HHHHHHHHHHHhhhhccCceEEEEEE
Q 008397 74 S-DDYTKIVDLLSRMAIHHTNVSFSCRK 100 (567)
Q Consensus 74 ~-~e~~~I~~~v~~yAl~~p~V~F~l~~ 100 (567)
. +.++.+...+..+|..+|+|++.|..
T Consensus 217 ~~d~l~~l~~RlrelA~Ln~Gl~I~l~d 244 (418)
T 1pvg_A 217 DNDILGVMRRRVYDINGSVRDINVYLNG 244 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCEEEETT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1 22233788999999999999999863
No 36
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=87.28 E-value=0.64 Score=45.98 Aligned_cols=75 Identities=24% Similarity=0.213 Sum_probs=50.1
Q ss_pred CCcchhHHHHhhhc-ceEEEeecCCCCCeEEEEEeC-Ceecccccc-------ccCCCCcEEEEcccccccHHHHHhhcC
Q 008397 2 GFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKA-------CAAVKGTQIMVENLFYNMIARRKTLQN 72 (567)
Q Consensus 2 GFRGEALaSIs~VS-~l~I~Tk~~~~~~g~~~~~~~-G~~~~~~~~-------~a~~~GTtV~V~dLFyN~PvRrk~lks 72 (567)
|.-|-.+.|.-.|| +|+|+|| . +..+|+..-.+ |....+..+ .....||.|++. ||.
T Consensus 176 GqFGVGFySaFmVAdkV~V~Sk-~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~------------Lke 241 (272)
T 3ied_A 176 GQFGVGFYSSFLVSNRVEVYTK-K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKE 241 (272)
T ss_dssp GGSCCGGGGGGGTEEEEEEEEE-S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECG
T ss_pred CcccceeheeeccCCEEEEEEc-C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE------------ECC
Confidence 56677788888887 6999999 4 55788877654 333211111 135789999986 443
Q ss_pred ch---HHHHHHHHHHHhhhhc
Q 008397 73 SS---DDYTKIVDLLSRMAIH 90 (567)
Q Consensus 73 ~~---~e~~~I~~~v~~yAl~ 90 (567)
.. .+-.+|.++|.+|+-.
T Consensus 242 d~~e~le~~~ik~likkys~f 262 (272)
T 3ied_A 242 ECDEYLEDYKLKELIKKYSEF 262 (272)
T ss_dssp GGGGGGSHHHHHHHHHHHCTT
T ss_pred ChHHhcCHHHHHHHHHHHHhC
Confidence 22 2346899999999843
No 37
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.84 E-value=15 Score=30.84 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhcc
Q 008397 489 PEFVLCLGNDVDWEDEKCCFQAIAAALGNFY 519 (567)
Q Consensus 489 p~fl~~L~~~v~w~~E~~cf~~i~r~lA~fy 519 (567)
|+++.||..+---..|+.||..|+.++|.+=
T Consensus 30 pEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~ 60 (100)
T 2e5n_A 30 PELLARLQKDGVNQKDKNSLGAILQQVANLN 60 (100)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhcC
Confidence 9999999987656789999999999999996
No 38
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=27.61 E-value=22 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhcc
Q 008397 489 PEFVLCLGNDVDWEDEKCCFQAIAAALGNFY 519 (567)
Q Consensus 489 p~fl~~L~~~v~w~~E~~cf~~i~r~lA~fy 519 (567)
|+++.||..+---..|+.||..|+.++|.+=
T Consensus 29 ~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~ 59 (104)
T 2doa_A 29 AELLLRLQKDGLTQADKDALDGLLQQVANMS 59 (104)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHSSEEC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 8999999977655679999999999999986
Done!