Query 008399
Match_columns 567
No_of_seqs 261 out of 618
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 5E-159 1E-163 1327.9 44.2 496 54-566 82-587 (918)
2 PLN02264 lipoxygenase 100.0 3E-158 7E-163 1321.2 42.8 496 54-566 85-589 (919)
3 PLN02337 lipoxygenase 100.0 1E-156 2E-161 1312.6 43.4 499 54-566 19-533 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 3E-110 6E-115 933.0 13.4 350 208-566 1-353 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 8.2E-39 1.8E-43 295.6 14.1 130 55-199 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.2 3.5E-11 7.6E-16 105.4 9.9 82 97-186 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.9 9.1E-09 2E-13 90.3 8.3 64 134-197 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.6 1.9E-07 4.2E-12 83.1 8.2 63 134-196 49-115 (116)
9 cd02899 PLAT_SR Scavenger rece 98.4 1.5E-06 3.3E-11 78.3 8.3 77 97-186 20-98 (109)
10 cd01753 PLAT_LOX PLAT domain o 98.1 2.7E-05 5.9E-10 70.3 10.1 83 97-187 20-105 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.9 9.1E-05 2E-09 67.2 10.9 85 96-188 19-108 (120)
12 cd01752 PLAT_polycystin PLAT/L 97.7 0.00026 5.7E-09 64.2 9.9 85 97-188 20-108 (120)
13 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.7 0.00011 2.4E-09 66.9 7.2 47 142-188 49-99 (114)
14 cd01754 PLAT_plant_stress PLAT 97.7 0.00035 7.6E-09 64.9 10.4 55 133-189 58-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 51.7 72 0.0016 29.0 7.7 51 132-182 45-105 (120)
16 KOG2080 Uncharacterized conser 46.6 14 0.00031 44.0 2.7 50 137-187 1015-1068(1295)
17 TIGR03124 ctirate_citX holo-AC 44.6 10 0.00022 36.9 1.0 50 205-271 85-134 (165)
18 COG3101 Uncharacterized protei 31.5 22 0.00049 34.2 1.0 36 519-558 29-64 (180)
19 PF11248 DUF3046: Protein of u 21.9 36 0.00079 28.3 0.5 23 437-460 21-43 (63)
20 PF04315 DUF462: Protein of un 20.2 46 0.001 32.6 0.8 36 518-557 18-53 (164)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=4.7e-159 Score=1327.93 Aligned_cols=496 Identities=46% Similarity=0.844 Sum_probs=465.6
Q ss_pred cceeeEEEEeecc-eeeeeeEeeecccCCcccccchhhhhhcCCcEEEEEEeeeeCCCCCCcc---ceeccccccCCCCC
Q 008399 54 VNIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK---PTIKGFAHRAGEDK 129 (567)
Q Consensus 54 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~k---~~l~~w~~~~~~~~ 129 (567)
.++||+|++|+|+ +|++++.+ +++|+++|++|++|+|||||++++++||+|| ++|++|+++ ....
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~----------~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~ 150 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFE----------DQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSND 150 (918)
T ss_pred CeEEEEEEEEeecccchhhccc----------chhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCC
Confidence 5799999999998 89998777 8999999999999999999999999999665 899999987 3322
Q ss_pred CCcEEEEEEEecCCCCCceEEEEEEecCCCceeeeeEEEccCCCCcEEEEeccceecCCCCccceEEeeccccccCCCCH
Q 008399 130 DGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPN 209 (567)
Q Consensus 130 ~~~~~y~~~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~rifF~nk~yLP~~tp~ 209 (567)
+++++|+++|+|+++||+||||+|+|.|++||||++|+|+++|+|+|||+||||||+.++|+.+||||+||+|||++||+
T Consensus 151 ~~~~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~ 230 (918)
T PLN02305 151 PHIVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPP 230 (918)
T ss_pred CCceEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCCCCCCCccccCC-
Q 008399 210 GLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL- 288 (567)
Q Consensus 210 ~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~~~l~RpvlGG~~~PYPRR~RTGR~~~~~dp~sesr~~- 288 (567)
+|++|||+||++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+|+++||.+|||..
T Consensus 231 ~l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~ 310 (918)
T PLN02305 231 GIKDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEK 310 (918)
T ss_pred HHHHHHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999669999999999999999999999954
Q ss_pred --CCccCCCCCcChhhhcccccchhHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhccCCCCCCCchhhHHHHHhhh-h
Q 008399 289 --INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-L 365 (567)
Q Consensus 289 --~~yvPrDE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~~-~ 365 (567)
.+||||||+|+++|+++|+++++|+++|+++|+|+++++.+..+|++|+||++||++|++||. .....++.+ +
T Consensus 311 ~~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~----~~~~~~~~~p~ 386 (918)
T PLN02305 311 PHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKT----EEPKDIGLNPF 386 (918)
T ss_pred CCCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCc----hhhhhhhcCCc
Confidence 479999999999999999999999999999999999998889999999999999999999995 211222223 3
Q ss_pred --hhhhhcccccccccccccCccccccccccccccHHHHHhhhhCCCcccccccccCCCCCCCCCCccCCCCCcccHHHH
Q 008399 366 --PRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 443 (567)
Q Consensus 366 --~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yG~~~s~it~e~i 443 (567)
++++++ .++++.+||||+|+||++|+++|++|+|||||+|||+||++|++|++||++|+|||++||+|+|+||+|||
T Consensus 387 ~~~~~~~i-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~v 465 (918)
T PLN02305 387 LGNFMKQV-LSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELI 465 (918)
T ss_pred hHHHHHHh-hhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHH
Confidence 345555 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeeEeecCCCceeeEEEEecCCCCCCCCCCCeEE
Q 008399 444 EKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVF 523 (567)
Q Consensus 444 e~~l~g~~tl~eal~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~p~~~~~~~~~~Vf 523 (567)
+..|+| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||
T Consensus 466 e~~L~G-~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~Vf 544 (918)
T PLN02305 466 ERELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVY 544 (918)
T ss_pred HhhcCC-CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceee
Confidence 999998 9999999999999999999999999999999999999999999999999999999999999877666778999
Q ss_pred eCCCCCCCChHHHHHHHHHHhccchhHHHHHHHhhcccccccC
Q 008399 524 TPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWYTYSFYSSIT 566 (567)
Q Consensus 524 tP~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~lrTHLv~e~~ 566 (567)
||.+++++.|.|+||||||++||++|||+|+|||+||+++|+.
T Consensus 545 tP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~Epf 587 (918)
T PLN02305 545 THGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPY 587 (918)
T ss_pred CCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHH
Confidence 9987778899999999999999999999999999999999973
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=3.4e-158 Score=1321.18 Aligned_cols=496 Identities=45% Similarity=0.835 Sum_probs=462.9
Q ss_pred cceeeEEEEeecc-eeeeeeEeeecccCCcccccchhhhhhcCCcEEEEEEeeeeCCCCCCcc----ceeccccccCCCC
Q 008399 54 VNIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGED 128 (567)
Q Consensus 54 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~k----~~l~~w~~~~~~~ 128 (567)
-++||+|++|+++ +|++++.+ +++|+++|++|++|+|||||+++||+||+|+ ++|++|+++ ...
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~----------~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~ 153 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLV----------KHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNI 153 (919)
T ss_pred EEEEEEEEEEeccccchhhccc----------chhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCC
Confidence 4699999999998 88888776 8999999999999999999999999998443 999999987 454
Q ss_pred CCCcEEEEEEEecCCCCCceEEEEEEecCCCceeeeeEEEccCCCCcEEEEeccceecCCCCccceEEeeccccccCCCC
Q 008399 129 KDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTP 208 (567)
Q Consensus 129 ~~~~~~y~~~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~rifF~nk~yLP~~tp 208 (567)
.+++++|+++|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+||||||++++++.+||||+||+|||++||
T Consensus 154 ~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP 233 (919)
T PLN02264 154 KAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETP 233 (919)
T ss_pred CCCceEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCC
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCCCCCCCccccCC
Q 008399 209 NGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL 288 (567)
Q Consensus 209 ~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~~~l~RpvlGG~~~PYPRR~RTGR~~~~~dp~sesr~~ 288 (567)
++|++|||+||++|||||+||||+||||||||+|||||+||++++++||||||++|||||||||||+|+++||.+|||..
T Consensus 234 ~~l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~ 313 (919)
T PLN02264 234 AGLRALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVE 313 (919)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999779999999999999999999999954
Q ss_pred ---CCccCCCCCcChhhhcccccchhHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhccCCCCCCCchhhHHHHHhhh-
Q 008399 289 ---INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI- 364 (567)
Q Consensus 289 ---~~yvPrDE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~~- 364 (567)
.+||||||+|+++|+++|+++++||++|+++|+|+++++.+ +|+||+||++||++|+++|.. ..++.++.+
T Consensus 314 ~~~~iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~---~~~~~~~~~p 388 (919)
T PLN02264 314 KPLPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLG---FQDDIFKKFP 388 (919)
T ss_pred CCCceeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcc---hhhhHhhcCC
Confidence 47999999999999999999999999999999999988654 999999999999999999951 112233344
Q ss_pred hhhhhhcccccccccccccCccccccccccccccHHHHHhhhhCCCcccccccccCCCCCCCCCCccCCCCCcccHHHHH
Q 008399 365 LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIE 444 (567)
Q Consensus 365 ~~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yG~~~s~it~e~ie 444 (567)
+|.+.+.++++++.+||||+|+||++|+++|++|+|||||+|||+||++|++|++||++|+|||+.||+|+|+||++||+
T Consensus 389 ~~~~~~~~~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~ 468 (919)
T PLN02264 389 LPKVVTTLQESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHII 468 (919)
T ss_pred hHHHHHHhhhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHh
Confidence 43433444778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeeEeecCCCceeeEEEEecCCCCCCCCCCCeEEe
Q 008399 445 KEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFT 524 (567)
Q Consensus 445 ~~l~g~~tl~eal~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~p~~~~~~~~~~Vft 524 (567)
+.|+| +||+|||++|||||+||||++|||++++|.++++++|||+||||++++|+|+||||||+++++.+++++++|||
T Consensus 469 ~~L~G-~Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~Vft 547 (919)
T PLN02264 469 GHLDG-LSVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVT 547 (919)
T ss_pred hccCC-CcHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeEC
Confidence 99998 99999999999999999999999999999999999999999999999999999999999998766566789999
Q ss_pred CCCCCCCChHHHHHHHHHHhccchhHHHHHHHhhcccccccC
Q 008399 525 PSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWYTYSFYSSIT 566 (567)
Q Consensus 525 P~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~lrTHLv~e~~ 566 (567)
|+++++++|.|+||||||++||++|||+|+||++||+++|+.
T Consensus 548 P~~d~~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~Epf 589 (919)
T PLN02264 548 PPVDATSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPF 589 (919)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 977777899999999999999999999999999999999974
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1e-156 Score=1312.56 Aligned_cols=499 Identities=41% Similarity=0.701 Sum_probs=465.1
Q ss_pred cceeeEEEEeecc-eeeeeeEeeecccCCcccccchhhhhhcCCcEEEEEEeeeeCC-CCC-Ccc----ceeccccccCC
Q 008399 54 VNIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDP-KTG-AEK----PTIKGFAHRAG 126 (567)
Q Consensus 54 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~-~~g-~~k----~~l~~w~~~~~ 126 (567)
.+|||+|++|+|+ +|++++.+ +++|+++|++||+|+|||||+++++ +|| +|| ++|++|+++..
T Consensus 19 ~~~~~~v~l~~k~~ld~~~~~~----------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~ 88 (866)
T PLN02337 19 EKIKGTVVLMKKNVLDFNDFNA----------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTIT 88 (866)
T ss_pred ceEEEEEEEEEecccchhhccc----------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCC
Confidence 4799999999998 89999887 8999999999999999999999998 687 443 89999998765
Q ss_pred CCCCCcEEEEEEEecCCCCCceEEEEEEecCCCceeeeeEEEccCC-CCcEEEEeccceecCCCCccceEEeeccccccC
Q 008399 127 EDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPR-NGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPS 205 (567)
Q Consensus 127 ~~~~~~~~y~~~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p-~~~i~FpCnsWV~~~~~~~~~rifF~nk~yLP~ 205 (567)
...+++++|+|+|+||++||+||||+|+|+|++||||++|+|+++| +|+|||+||||||+.++++.+||||+||+|||+
T Consensus 89 ~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~ 168 (866)
T PLN02337 89 SLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPS 168 (866)
T ss_pred CCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcc
Confidence 6567788999999999999999999999999999999999999999 489999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCC-CCCCCCcccCCCCCCCCCCCCcc
Q 008399 206 QTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASE 284 (567)
Q Consensus 206 ~tp~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~~~l~RpvlGG-~~~PYPRR~RTGR~~~~~dp~se 284 (567)
+||++|++|||+||++|||||+||||+||||||||+|||||+||++++++|||||| ++|||||||||||+||++||.+|
T Consensus 169 ~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~e 248 (866)
T PLN02337 169 QTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSE 248 (866)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999 67999999999999999999999
Q ss_pred ccCC----CCccCCCCCcChhhhcccccchhHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhccCCCCCCCchhhHHHH
Q 008399 285 SRTL----INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKAL 360 (567)
Q Consensus 285 sr~~----~~yvPrDE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~ 360 (567)
||.. .+||||||+|+++|+++|+++++||++|+++|+|+++++.+..+|++|+||++||++|+++|.. +..+.+
T Consensus 249 sr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~--~~~~~~ 326 (866)
T PLN02337 249 SRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNG--PLLEEL 326 (866)
T ss_pred cccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCc--hHHHHh
Confidence 9943 5799999999999999999999999999999999999988899999999999999999999852 011223
Q ss_pred Hhhh-hhhhhhcccccccccccccCccccccccccccccHHHHHhhhhCCCcccccccccCCCCCCCCCCccCCCCCccc
Q 008399 361 WRTI-LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAIT 439 (567)
Q Consensus 361 ~~~~-~~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yG~~~s~it 439 (567)
.+.+ +++++++++++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+|+|+||
T Consensus 327 ~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT 406 (866)
T PLN02337 327 RKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSIT 406 (866)
T ss_pred hhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccC
Confidence 3333 467888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeeEeecCCCceeeEEEEecCCCCCCC--C
Q 008399 440 KELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGK--P 517 (567)
Q Consensus 440 ~e~ie~~l~g~~tl~eal~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~p~~~~~--~ 517 (567)
++||++.|+| +||+|||++|||||+||||++|||+.++|...+ +.|||+||||++++|+|+||||||++|+..++ +
T Consensus 407 ~e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~-k~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g 484 (866)
T PLN02337 407 EEHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTST-KTYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFG 484 (866)
T ss_pred HHHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCC-ccccceeEEEECCCCCEeEEEEEeccCCCCcccCC
Confidence 9999999998 999999999999999999999999999998654 49999999999999999999999999876543 4
Q ss_pred CCCeEEeCCCCCCCChHHHHHHHHHHhccchhHHHHHHHhhcccccccC
Q 008399 518 QWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWYTYSFYSSIT 566 (567)
Q Consensus 518 ~~~~VftP~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~lrTHLv~e~~ 566 (567)
+.++||||+++++++|.|+||||||++||++|||+|+||++||+++|+.
T Consensus 485 ~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~Epf 533 (866)
T PLN02337 485 AVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPF 533 (866)
T ss_pred CCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHH
Confidence 6799999998777899999999999999999999999999999999973
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=2.9e-110 Score=932.97 Aligned_cols=350 Identities=56% Similarity=0.943 Sum_probs=291.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCC-CCCCCCcccCCCCCCCCCCCCcccc
Q 008399 208 PNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASESR 286 (567)
Q Consensus 208 p~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~~~l~RpvlGG-~~~PYPRR~RTGR~~~~~dp~sesr 286 (567)
|++|+++|++||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCccCCCCCcChhhhcccccchhHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhccCCCCCCCchhhHHHHHhhh--
Q 008399 287 TLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-- 364 (567)
Q Consensus 287 ~~~~yvPrDE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~~-- 364 (567)
..++||||||+|+++|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|+++|. +..+..
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~-------~~~~~~~~ 153 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT-------DLLKKLIP 153 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H-------HHHCCHTT
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh-------hHhhhcCc
Confidence 88999999999999999999999999999999999999887889999999999999999999883 233333
Q ss_pred hhhhhhcccccccccccccCccccccccccccccHHHHHhhhhCCCcccccccccCCCCCCCCCCccCCCCCcccHHHHH
Q 008399 365 LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIE 444 (567)
Q Consensus 365 ~~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yG~~~s~it~e~ie 444 (567)
++.+++++..+++.++|||+|+|+++++++|++|+|||||+|||+||++|++|+++|++|+|||++||+++|+||++||+
T Consensus 154 ~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~ 233 (667)
T PF00305_consen 154 LELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIE 233 (667)
T ss_dssp STTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHH
T ss_pred HHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhh
Confidence 55788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeeEeecCCCceeeEEEEecCCCCCCCCCCCeEEe
Q 008399 445 KEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFT 524 (567)
Q Consensus 445 ~~l~g~~tl~eal~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~p~~~~~~~~~~Vft 524 (567)
..|+| +||++||++|||||+|||++++|++++||. .+++.|||+||||++++|+|+||||||++|++.+.++.++|||
T Consensus 234 ~~l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~t 311 (667)
T PF00305_consen 234 PQLEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFT 311 (667)
T ss_dssp HHCHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-
T ss_pred hccCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeee
Confidence 99999 999999999999999999999999999998 7889999999999999999999999999887655456789999
Q ss_pred CCCCCCCChHHHHHHHHHHhccchhHHHHHHHhhcccccccC
Q 008399 525 PSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWYTYSFYSSIT 566 (567)
Q Consensus 525 P~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~lrTHLv~e~~ 566 (567)
|+++++.+|.|+||||||++||++|||+|+||++||+++|+.
T Consensus 312 P~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~ 353 (667)
T PF00305_consen 312 PSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPF 353 (667)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_pred cCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHH
Confidence 996655678999999999999999999999999999999963
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=8.2e-39 Score=295.58 Aligned_cols=130 Identities=46% Similarity=0.784 Sum_probs=119.8
Q ss_pred ceeeEEEEeecc-eeeeeeEeeecccCCcccccchhhhhhcCCcEEEEEEeeeeCCCCCCcc----ceeccccccCCCCC
Q 008399 55 NIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDK 129 (567)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~k----~~l~~w~~~~~~~~ 129 (567)
++||+|++|+++ ++++++. +.+|++.|++|++|+|||||+++||+||+|| ++|++|.++.
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-----------~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~---- 66 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-----------SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL---- 66 (137)
T ss_pred EEEEEEEEEEeecccccccc-----------chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC----
Confidence 689999999998 7777644 5789999999999999999999999999665 8999998653
Q ss_pred CCcEEEEEEEecCCCCCceEEEEEEecCCCceeeeeEEEccCCC-CcEEEEeccceecCCCCccceEEeec
Q 008399 130 DGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTN 199 (567)
Q Consensus 130 ~~~~~y~~~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~rifF~n 199 (567)
+++++|+++|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||.++|+.+||||+|
T Consensus 67 ~~e~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 67 AGESAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred CcceEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 55779999999999999999999999999999999999999994 89999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.25 E-value=3.5e-11 Score=105.39 Aligned_cols=82 Identities=35% Similarity=0.528 Sum_probs=63.1
Q ss_pred cEEEEEEeeeeCCCCCCcc-ceeccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEecC-CCceeeeeEEEccCCC-
Q 008399 97 SLLLELVSAELDPKTGAEK-PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH-HKEMYLNDIVLDGPRN- 173 (567)
Q Consensus 97 ~v~lqLvS~~~~~~~g~~k-~~l~~w~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~~-~~e~fl~~i~l~~~p~- 173 (567)
+|.|+|++++.+ +|... ..+++|. ... ...|+..|.++.++|++++|.|++++ +.+|||++|+|.+.+.
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f~~-g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~ 91 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----FAR-GSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTG 91 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----ccC-CceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCC
Confidence 699999988765 33211 3344442 112 33677788999999999999999999 8999999999987664
Q ss_pred CcEEEEeccceec
Q 008399 174 GPVNITCGSWVQS 186 (567)
Q Consensus 174 ~~i~FpCnsWV~~ 186 (567)
..++|+||+||++
T Consensus 92 ~~~~F~c~~Wl~~ 104 (105)
T smart00308 92 GKYHFPCNSWVYP 104 (105)
T ss_pred CEEEEEcCceeCC
Confidence 4799999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.85 E-value=9.1e-09 Score=90.29 Aligned_cols=64 Identities=23% Similarity=0.538 Sum_probs=55.7
Q ss_pred EEEEEEecCCCCCceEEEEEEec---CCCceeeeeEEEccCCCC-cEEEEeccceecCCCCccceEEe
Q 008399 134 IYESKFEVPPSFGEVGAILVENE---HHKEMYLNDIVLDGPRNG-PVNITCGSWVQSKHVNKQKRIFF 197 (567)
Q Consensus 134 ~y~~~f~~~~~fG~pgai~v~n~---~~~e~fl~~i~l~~~p~~-~i~FpCnsWV~~~~~~~~~rifF 197 (567)
..+..|..+.++|++.+|.|.++ +...|||++|+|...+.+ .+.|+||+||....+++..|+||
T Consensus 46 ~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 44455577889999999999998 688999999999876654 79999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.58 E-value=1.9e-07 Score=83.06 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=53.0
Q ss_pred EEEEEEecCCCCCceEEEEEEecCCC---ceeeeeEEEccCCC-CcEEEEeccceecCCCCccceEE
Q 008399 134 IYESKFEVPPSFGEVGAILVENEHHK---EMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIF 196 (567)
Q Consensus 134 ~y~~~f~~~~~fG~pgai~v~n~~~~---e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~rif 196 (567)
.++..|..+.++|++.+|.|++++.. +|||++|+|..... ..++|+||+||.....++..|+|
T Consensus 49 ~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 49 TDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred ceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeec
Confidence 44445577889999999999998854 99999999987664 47999999999998888888876
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.36 E-value=1.5e-06 Score=78.28 Aligned_cols=77 Identities=12% Similarity=0.256 Sum_probs=55.0
Q ss_pred cEEEEEEeeeeCCCCCCccceeccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEecC-CCceeeeeEEEccCCCC-
Q 008399 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH-HKEMYLNDIVLDGPRNG- 174 (567)
Q Consensus 97 ~v~lqLvS~~~~~~~g~~k~~l~~w~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~~-~~e~fl~~i~l~~~p~~- 174 (567)
+|.|+||-++- .++. ..|.+ ....++ ..+|.+ . +.++|++-.|.|.|.. .+.|||+.|+|.+ |.|
T Consensus 20 ~V~i~L~G~~g--~S~~--~~L~~----~F~~G~-~d~F~v--~-~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~ 86 (109)
T cd02899 20 TIEITLLGSSG--RSNP--KTLSQ----GFYPGS-LKRIRF--R-AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGK 86 (109)
T ss_pred eEEEEEEECCC--CcCC--EEccC----ccCCCc-eEEEEE--C-ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCC
Confidence 48899996542 2222 22332 122222 446766 5 8999999999998877 6789999999987 755
Q ss_pred cEEEEeccceec
Q 008399 175 PVNITCGSWVQS 186 (567)
Q Consensus 175 ~i~FpCnsWV~~ 186 (567)
.++||||+|+..
T Consensus 87 ~~~Fpc~rWla~ 98 (109)
T cd02899 87 VFAFNVKRWIGY 98 (109)
T ss_pred EEEEEcceeeCC
Confidence 688999999974
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=98.07 E-value=2.7e-05 Score=70.27 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=55.8
Q ss_pred cEEEEEEeeeeCCCCCCccceeccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEecC---CCceeeeeEEEccCCC
Q 008399 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRN 173 (567)
Q Consensus 97 ~v~lqLvS~~~~~~~g~~k~~l~~w~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~ 173 (567)
+|.|+|+-+.-+ ++ ...|...... ...++ ..+|.+ ..+.++|++-.|.|..+. ...|||+.|+|++..+
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~~-FerG~-~d~F~v--~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~~ 91 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGYD-FERGA-VDEYKV--KVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPGG 91 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCCc-cCCCC-eeEEEE--ecccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCCC
Confidence 488888855432 22 2223322111 22222 235655 678899999999999876 6799999999986443
Q ss_pred CcEEEEeccceecC
Q 008399 174 GPVNITCGSWVQSK 187 (567)
Q Consensus 174 ~~i~FpCnsWV~~~ 187 (567)
..++||||+|+...
T Consensus 92 ~~~~F~c~rWl~~~ 105 (113)
T cd01753 92 DEYHFPCYRWIEGY 105 (113)
T ss_pred CEEEEEhHHeECCC
Confidence 46899999999875
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.94 E-value=9.1e-05 Score=67.16 Aligned_cols=85 Identities=14% Similarity=0.329 Sum_probs=56.4
Q ss_pred CcEEEEEEeeeeCCCCCCccceeccc-cccCCCCCCCcEEEEEEEecCCCCCceEEEEEEecC---CCceeeeeEEEccC
Q 008399 96 KSLLLELVSAELDPKTGAEKPTIKGF-AHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGP 171 (567)
Q Consensus 96 ~~v~lqLvS~~~~~~~g~~k~~l~~w-~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~ 171 (567)
-+|.++|+-+.- . .+.-.|.++ .......++ ..+|.+ .. .++|++..|.|..+. ...|||+.|+|...
T Consensus 19 a~V~i~L~G~~g--~--s~~~~L~~~~~~~~FerGs-~d~F~i--~~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~ 90 (120)
T cd01756 19 ANVFITLYGENG--D--TGKRKLKKSNNKNKFERGQ-TDKFTV--EA-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREP 90 (120)
T ss_pred cEEEEEEEeCCC--c--cccEEccCCCcCCcccCCC-eEEEEE--Ee-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEEC
Confidence 347888874321 1 223445554 112222222 346766 44 799999999999876 46899999999765
Q ss_pred CCC-cEEEEeccceecCC
Q 008399 172 RNG-PVNITCGSWVQSKH 188 (567)
Q Consensus 172 p~~-~i~FpCnsWV~~~~ 188 (567)
..+ .++||||+|+...+
T Consensus 91 ~~~~~~~F~~~~Wl~~~~ 108 (120)
T cd01756 91 GTGDEYTFPCNRWLDKDE 108 (120)
T ss_pred CCceEEEEEeCCccCCCC
Confidence 544 68999999998764
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.70 E-value=0.00026 Score=64.23 Aligned_cols=85 Identities=15% Similarity=0.305 Sum_probs=55.0
Q ss_pred cEEEEEEeeeeCCCCCCccceeccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEecC---CCceeeeeEEEccCCC
Q 008399 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRN 173 (567)
Q Consensus 97 ~v~lqLvS~~~~~~~g~~k~~l~~w~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~ 173 (567)
+|.|+|+.+.-+ ++ +..|.+.... ....+ ..++..+..+.++|++-.|.|..+. ...|||++|+|.+...
T Consensus 20 ~V~i~L~G~~g~--s~--~~~L~~~~~~--~F~rG-~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t 92 (120)
T cd01752 20 KVTITLYGAEGE--SE--PHHLRDPEKP--IFERG-SVDSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQT 92 (120)
T ss_pred EEEEEEEeCCCC--cc--cEEcCCCCcc--ceeCC-CeeEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCC
Confidence 588888854432 11 2233322111 12222 1333334667899999999998665 6799999999976543
Q ss_pred C-cEEEEeccceecCC
Q 008399 174 G-PVNITCGSWVQSKH 188 (567)
Q Consensus 174 ~-~i~FpCnsWV~~~~ 188 (567)
+ .+.||||+|+...+
T Consensus 93 ~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 93 GKKWFFLCNDWLSVEE 108 (120)
T ss_pred CcEEEEEeCcEECCcC
Confidence 4 68999999998754
No 13
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.69 E-value=0.00011 Score=66.86 Aligned_cols=47 Identities=11% Similarity=0.406 Sum_probs=40.6
Q ss_pred CCCCCceEEEEEEecC---CCceeeeeEEEccCCCC-cEEEEeccceecCC
Q 008399 142 PPSFGEVGAILVENEH---HKEMYLNDIVLDGPRNG-PVNITCGSWVQSKH 188 (567)
Q Consensus 142 ~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~~-~i~FpCnsWV~~~~ 188 (567)
+.++|+.-.|.|..+. ...|||+.|+|++.+.+ .++||||+|+...+
T Consensus 49 ~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~ 99 (114)
T cd01757 49 CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGV 99 (114)
T ss_pred cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCC
Confidence 3999999999999766 67999999999887755 69999999998654
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.68 E-value=0.00035 Score=64.85 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=44.4
Q ss_pred EEEEEEEecCCCCCceEEEEEEecC---CCceeeeeEEEccCCCC----cEEEEeccceecCCC
Q 008399 133 IIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRNG----PVNITCGSWVQSKHV 189 (567)
Q Consensus 133 ~~y~~~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~~----~i~FpCnsWV~~~~~ 189 (567)
.+|.+ ..+.++|++-.|.|.... ...|||+.|+|.+...+ .++||||+|+...++
T Consensus 58 d~F~v--~~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 58 DRFSG--RGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred cEEEE--EeccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 46776 667889999999999765 67999999999865422 699999999976543
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=51.73 E-value=72 Score=29.05 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=39.9
Q ss_pred cEEEEEEEecCCCCCceEEEEEEecC----------CCceeeeeEEEccCCCCcEEEEecc
Q 008399 132 HIIYESKFEVPPSFGEVGAILVENEH----------HKEMYLNDIVLDGPRNGPVNITCGS 182 (567)
Q Consensus 132 ~~~y~~~f~~~~~fG~pgai~v~n~~----------~~e~fl~~i~l~~~p~~~i~FpCns 182 (567)
...|+.-+..+.++|..-.|.++=+. ...||++.|+|+....+.-...|.+
T Consensus 45 g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 45 NKTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CCEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 34677777889999999999997432 3489999999987676766677877
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=46.65 E-value=14 Score=44.01 Aligned_cols=50 Identities=14% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEecCCCCCceEEEEEEecC---CCceeeeeEEEcc-CCCCcEEEEeccceecC
Q 008399 137 SKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDG-PRNGPVNITCGSWVQSK 187 (567)
Q Consensus 137 ~~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~-~p~~~i~FpCnsWV~~~ 187 (567)
.+|+. .++|..--+.|-... ...||++.|.|.. +-+.++.|||++|.-+.
T Consensus 1015 f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1015 FKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred eEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCc
Confidence 34443 789999888885433 5689999998743 22348999999999764
No 17
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=44.60 E-value=10 Score=36.86 Aligned_cols=50 Identities=30% Similarity=0.447 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCCcccC
Q 008399 205 SQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCR 271 (567)
Q Consensus 205 ~~tp~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~~~l~RpvlGG~~~PYPRR~R 271 (567)
-+.++.-.+..-=+|++-.- -=|++|.|||+.-|. .+.|--|| +| ||||=
T Consensus 85 v~~~a~~vK~~~i~iEe~hp--------lGRL~DlDV~~~~g~-----~iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 85 VDAPALELKRLMIKLEESHP--------LGRLWDIDVLDADGK-----SLSRTDLG---LP-PRKCL 134 (165)
T ss_pred eCCCHHHHHHHHHHHHhCCc--------hhhheeheeecCCCC-----CcCHHHcC---CC-CCeee
Confidence 44454445555556665542 128999999964342 36788787 56 88885
No 18
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.53 E-value=22 Score=34.19 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCeEEeCCCCCCCChHHHHHHHHHHhccchhHHHHHHHhh
Q 008399 519 WKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWYT 558 (567)
Q Consensus 519 ~~~VftP~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~lr 558 (567)
+.|||+|+|+..+...=-.|.-+.. ++.|| |+||+-
T Consensus 29 DEPiYlPAde~vpyhri~FA~GfYa---SalHE-IaHWcv 64 (180)
T COG3101 29 DEPIYLPADEEVPYHRIVFAHGFYA---SALHE-ISHWCI 64 (180)
T ss_pred CcceeccCccCCCceeEEEechhHH---HHHHH-HHHHHH
Confidence 4689999997655444444554444 46899 899973
No 19
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.87 E-value=36 Score=28.29 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.1
Q ss_pred cccHHHHHHhhCCcccHHHHHhcC
Q 008399 437 AITKELIEKEIGGIMTVEEAIKQK 460 (567)
Q Consensus 437 ~it~e~ie~~l~g~~tl~eal~~g 460 (567)
.|-.+|+-..|+| .|.+|||++|
T Consensus 21 ~la~dhvL~~LGg-rT~~eAL~~G 43 (63)
T PF11248_consen 21 SLARDHVLSELGG-RTAAEALEAG 43 (63)
T ss_pred HHHHhcchhhcCC-cCHHHHHHcC
Confidence 6777888888988 9999999987
No 20
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=20.19 E-value=46 Score=32.55 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCCeEEeCCCCCCCChHHHHHHHHHHhccchhHHHHHHHh
Q 008399 518 QWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWY 557 (567)
Q Consensus 518 ~~~~VftP~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~l 557 (567)
..-|+|.|+++......=..|-=++. |..|| |+||.
T Consensus 18 ~dEP~YlPa~~~~~~~rI~Fahgf~a---SALHE-IaHWc 53 (164)
T PF04315_consen 18 DDEPIYLPADDECPYHRIIFAHGFFA---SALHE-IAHWC 53 (164)
T ss_pred CCCccccCCCCCCCceeEEeecchHH---HHHHH-HHHHH
Confidence 45789999986422222222333333 56999 99996
Done!