Query 008400
Match_columns 567
No_of_seqs 542 out of 4315
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 23:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 5E-65 1.1E-69 496.3 40.0 357 162-555 2-364 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 1.2E-36 2.6E-41 297.5 20.5 351 45-513 1-357 (397)
3 KOG0545 Aryl-hydrocarbon recep 100.0 4.4E-35 9.6E-40 265.2 17.6 276 268-545 8-328 (329)
4 KOG0549 FKBP-type peptidyl-pro 100.0 3.2E-28 7E-33 211.5 15.1 169 85-262 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 100.0 2.1E-27 4.5E-32 206.5 16.2 176 197-386 1-180 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 1.3E-26 2.8E-31 176.6 11.4 106 38-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.9E-26 4.2E-31 205.5 12.5 108 33-143 97-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 1.3E-24 2.9E-29 165.7 11.0 106 271-381 2-107 (108)
9 PRK11570 peptidyl-prolyl cis-t 99.9 2.8E-22 6E-27 186.4 14.5 108 33-143 98-205 (206)
10 KOG0552 FKBP-type peptidyl-pro 99.9 8.3E-22 1.8E-26 180.9 12.2 108 33-143 116-225 (226)
11 TIGR03516 ppisom_GldI peptidyl 99.9 2.1E-21 4.5E-26 176.1 14.6 110 33-144 65-176 (177)
12 COG0545 FkpA FKBP-type peptidy 99.8 1.2E-20 2.7E-25 168.5 11.6 103 150-260 98-204 (205)
13 KOG0553 TPR repeat-containing 99.8 3.1E-20 6.7E-25 175.5 12.1 125 394-533 76-200 (304)
14 PRK10902 FKBP-type peptidyl-pr 99.8 7.8E-20 1.7E-24 176.2 14.8 110 33-146 142-251 (269)
15 KOG4234 TPR repeat-containing 99.8 4.8E-19 1.1E-23 156.7 16.1 134 395-538 91-224 (271)
16 PF00254 FKBP_C: FKBP-type pep 99.8 8.9E-19 1.9E-23 143.9 12.1 93 49-141 1-94 (94)
17 PRK15095 FKBP-type peptidyl-pr 99.7 5.4E-18 1.2E-22 150.9 10.0 133 52-193 4-139 (156)
18 KOG0552 FKBP-type peptidyl-pro 99.7 1.1E-17 2.3E-22 153.9 11.8 105 149-260 116-225 (226)
19 COG1047 SlpA FKBP-type peptidy 99.7 1.2E-17 2.6E-22 147.0 9.0 131 52-198 2-141 (174)
20 TIGR03516 ppisom_GldI peptidyl 99.7 7.8E-17 1.7E-21 146.3 12.0 104 152-261 68-176 (177)
21 PRK10737 FKBP-type peptidyl-pr 99.7 1.8E-16 3.9E-21 144.5 11.0 125 52-193 2-135 (196)
22 PRK11570 peptidyl-prolyl cis-t 99.7 5.7E-16 1.2E-20 144.2 13.6 105 269-381 101-205 (206)
23 KOG0548 Molecular co-chaperone 99.7 5.3E-16 1.1E-20 156.7 11.8 117 398-529 357-473 (539)
24 PF00254 FKBP_C: FKBP-type pep 99.7 1.3E-15 2.9E-20 125.0 12.0 94 282-379 1-94 (94)
25 KOG4648 Uncharacterized conser 99.6 1E-15 2.2E-20 146.0 10.1 122 392-528 90-211 (536)
26 KOG0547 Translocase of outer m 99.6 7.3E-15 1.6E-19 146.3 14.0 127 388-529 104-231 (606)
27 PRK10902 FKBP-type peptidyl-pr 99.6 1.2E-14 2.5E-19 140.4 12.4 104 150-262 143-250 (269)
28 KOG0551 Hsp90 co-chaperone CNS 99.6 2.6E-14 5.7E-19 136.3 12.5 113 398-521 80-192 (390)
29 KOG0550 Molecular chaperone (D 99.5 3.5E-14 7.5E-19 139.1 11.2 128 394-533 244-371 (486)
30 PLN03088 SGT1, suppressor of 99.5 9.7E-14 2.1E-18 142.2 13.9 119 399-532 2-120 (356)
31 KOG0548 Molecular co-chaperone 99.5 2E-13 4.3E-18 138.3 11.8 113 399-526 2-114 (539)
32 PRK15359 type III secretion sy 99.5 7.4E-13 1.6E-17 117.7 13.2 114 402-530 27-140 (144)
33 TIGR00990 3a0801s09 mitochondr 99.4 1.5E-12 3.2E-17 144.2 17.1 134 366-516 95-228 (615)
34 PRK15363 pathogenicity island 99.4 7.7E-12 1.7E-16 109.5 13.5 103 398-515 34-136 (157)
35 KOG4642 Chaperone-dependent E3 99.4 3.3E-12 7.2E-17 116.8 10.0 117 397-528 8-129 (284)
36 PRK15095 FKBP-type peptidyl-pr 99.3 2.8E-12 6.1E-17 114.3 8.5 81 168-261 4-88 (156)
37 COG1047 SlpA FKBP-type peptidy 99.3 5.8E-12 1.3E-16 111.2 9.1 122 169-307 3-133 (174)
38 KOG0376 Serine-threonine phosp 99.3 2.4E-12 5.3E-17 129.5 7.4 121 398-533 3-123 (476)
39 TIGR02552 LcrH_SycD type III s 99.3 2.4E-11 5.2E-16 106.8 13.0 116 399-529 17-132 (135)
40 KOG0546 HSP90 co-chaperone CPR 99.3 5.6E-12 1.2E-16 122.0 7.1 155 391-545 214-372 (372)
41 KOG4626 O-linked N-acetylgluco 99.2 3E-11 6.5E-16 123.8 10.1 138 397-550 250-387 (966)
42 PRK10737 FKBP-type peptidyl-pr 99.2 3.2E-11 6.9E-16 110.3 8.8 80 169-261 3-85 (196)
43 PRK11189 lipoprotein NlpI; Pro 99.2 3.9E-10 8.4E-15 113.0 14.3 105 397-516 62-166 (296)
44 PF13414 TPR_11: TPR repeat; P 99.2 7.8E-11 1.7E-15 90.5 7.2 65 449-513 4-69 (69)
45 KOG4626 O-linked N-acetylgluco 99.1 1.5E-10 3.2E-15 118.8 10.1 112 399-525 354-465 (966)
46 PRK10370 formate-dependent nit 99.1 5.9E-10 1.3E-14 104.5 13.1 111 398-523 72-185 (198)
47 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.1E-09 4.5E-14 91.9 13.0 111 400-522 3-116 (119)
48 TIGR00990 3a0801s09 mitochondr 99.1 1.4E-09 3E-14 120.6 14.2 147 398-545 330-495 (615)
49 KOG0624 dsRNA-activated protei 99.0 1.3E-09 2.8E-14 104.9 10.2 128 394-532 264-391 (504)
50 KOG0624 dsRNA-activated protei 99.0 1.8E-09 3.8E-14 103.9 10.2 110 398-522 37-146 (504)
51 KOG1308 Hsp70-interacting prot 99.0 4E-10 8.7E-15 108.7 5.5 122 390-527 105-226 (377)
52 PRK02603 photosystem I assembl 99.0 8.6E-09 1.9E-13 94.7 14.1 110 394-515 30-153 (172)
53 KOG1155 Anaphase-promoting com 99.0 1.1E-08 2.5E-13 102.2 14.8 136 399-550 364-499 (559)
54 KOG4555 TPR repeat-containing 99.0 2.7E-08 5.9E-13 82.8 14.6 117 392-525 36-156 (175)
55 PF13432 TPR_16: Tetratricopep 99.0 2.3E-09 5E-14 81.2 7.7 65 452-516 1-65 (65)
56 PRK15331 chaperone protein Sic 99.0 5.9E-09 1.3E-13 91.8 11.1 104 399-518 37-140 (165)
57 PRK09782 bacteriophage N4 rece 99.0 8.3E-09 1.8E-13 117.8 15.0 118 401-533 611-728 (987)
58 KOG1126 DNA-binding cell divis 98.9 2.4E-09 5.2E-14 111.6 8.8 136 399-534 421-575 (638)
59 KOG0547 Translocase of outer m 98.9 1.2E-08 2.6E-13 102.6 12.8 139 396-551 323-462 (606)
60 PRK10370 formate-dependent nit 98.9 1.4E-08 3.1E-13 95.1 12.7 124 412-551 52-178 (198)
61 COG3063 PilF Tfp pilus assembl 98.9 2.2E-08 4.8E-13 92.0 13.0 132 394-525 30-182 (250)
62 cd00189 TPR Tetratricopeptide 98.9 6.9E-09 1.5E-13 83.5 8.9 98 402-514 3-100 (100)
63 COG0544 Tig FKBP-type peptidyl 98.9 1.3E-09 2.9E-14 113.0 5.7 141 9-159 113-256 (441)
64 PF12895 Apc3: Anaphase-promot 98.9 2.1E-09 4.6E-14 86.0 5.5 83 412-508 2-84 (84)
65 KOG1173 Anaphase-promoting com 98.9 1.1E-08 2.3E-13 104.8 11.6 120 401-528 416-535 (611)
66 KOG0553 TPR repeat-containing 98.9 7.5E-09 1.6E-13 98.8 9.7 92 453-545 86-177 (304)
67 TIGR03302 OM_YfiO outer membra 98.9 4.2E-08 9E-13 95.0 15.4 114 398-523 32-156 (235)
68 PRK15179 Vi polysaccharide bio 98.9 2E-08 4.4E-13 110.5 13.8 134 398-547 85-218 (694)
69 CHL00033 ycf3 photosystem I as 98.9 6.6E-08 1.4E-12 88.4 14.7 111 394-516 30-154 (168)
70 TIGR00115 tig trigger factor. 98.8 9.1E-09 2E-13 108.0 9.8 101 51-159 145-245 (408)
71 PRK12370 invasion protein regu 98.8 3E-08 6.6E-13 108.3 13.5 107 404-525 343-450 (553)
72 PRK15359 type III secretion sy 98.8 4.3E-08 9.3E-13 87.0 11.7 107 420-545 14-120 (144)
73 COG5010 TadD Flp pilus assembl 98.8 4.4E-08 9.6E-13 91.9 12.1 121 401-536 102-222 (257)
74 PF13414 TPR_11: TPR repeat; P 98.8 4.7E-09 1E-13 80.5 4.5 66 399-479 3-69 (69)
75 TIGR02521 type_IV_pilW type IV 98.8 1.3E-07 2.8E-12 90.3 15.6 118 402-532 102-219 (234)
76 PRK12370 invasion protein regu 98.8 4.2E-08 9.2E-13 107.1 13.5 93 412-519 317-409 (553)
77 PRK09782 bacteriophage N4 rece 98.8 5.4E-08 1.2E-12 111.3 14.3 99 449-548 610-708 (987)
78 PRK10803 tol-pal system protei 98.8 1.2E-07 2.7E-12 92.3 14.9 113 401-525 144-260 (263)
79 PF13371 TPR_9: Tetratricopept 98.8 3E-08 6.4E-13 76.9 8.4 70 455-524 2-71 (73)
80 TIGR02521 type_IV_pilW type IV 98.8 1.4E-07 3E-12 90.0 14.5 84 450-533 101-186 (234)
81 PRK01490 tig trigger factor; P 98.8 2.3E-08 5E-13 105.8 9.8 99 52-158 157-255 (435)
82 KOG1155 Anaphase-promoting com 98.8 4.6E-08 1E-12 97.9 10.9 118 404-536 335-452 (559)
83 PRK11189 lipoprotein NlpI; Pro 98.8 1.1E-07 2.3E-12 95.5 13.9 109 413-532 40-148 (296)
84 KOG1126 DNA-binding cell divis 98.7 6.2E-08 1.3E-12 101.2 11.5 123 397-534 487-609 (638)
85 KOG0550 Molecular chaperone (D 98.7 8.5E-08 1.8E-12 94.8 11.3 143 398-546 202-350 (486)
86 TIGR02552 LcrH_SycD type III s 98.7 6.4E-08 1.4E-12 84.9 9.6 97 450-547 19-115 (135)
87 PRK10866 outer membrane biogen 98.7 6.5E-07 1.4E-11 86.7 17.2 131 399-541 32-186 (243)
88 COG3063 PilF Tfp pilus assembl 98.7 2.8E-07 6E-12 84.9 13.5 137 398-549 102-238 (250)
89 PF14559 TPR_19: Tetratricopep 98.7 3.5E-08 7.5E-13 75.3 6.5 67 459-525 2-68 (68)
90 PRK15174 Vi polysaccharide exp 98.7 1E-07 2.3E-12 105.9 12.9 113 405-532 218-334 (656)
91 PF13512 TPR_18: Tetratricopep 98.7 2.9E-07 6.3E-12 79.4 12.6 110 399-520 10-137 (142)
92 KOG1125 TPR repeat-containing 98.7 1.9E-08 4.1E-13 103.4 5.9 97 403-514 434-530 (579)
93 PF13525 YfiO: Outer membrane 98.7 5.8E-07 1.3E-11 84.8 14.8 130 399-540 5-151 (203)
94 PRK15174 Vi polysaccharide exp 98.7 2.2E-07 4.7E-12 103.4 13.3 111 400-525 247-361 (656)
95 PRK11447 cellulose synthase su 98.6 6.1E-07 1.3E-11 106.5 17.3 127 399-526 303-429 (1157)
96 KOG2076 RNA polymerase III tra 98.6 8E-07 1.7E-11 95.9 16.0 134 399-548 139-272 (895)
97 PLN02789 farnesyltranstransfer 98.6 8.1E-07 1.8E-11 89.3 14.9 115 399-528 71-188 (320)
98 TIGR03302 OM_YfiO outer membra 98.6 8.1E-07 1.7E-11 86.0 14.2 125 400-536 71-223 (235)
99 PRK15363 pathogenicity island 98.6 6.2E-07 1.3E-11 78.8 11.6 96 450-546 37-132 (157)
100 PF13429 TPR_15: Tetratricopep 98.6 1.1E-07 2.3E-12 94.8 7.8 132 399-546 146-277 (280)
101 COG1729 Uncharacterized protei 98.6 1E-06 2.2E-11 84.0 13.6 114 400-525 142-258 (262)
102 PRK15179 Vi polysaccharide bio 98.6 6.7E-07 1.4E-11 98.6 13.5 106 395-515 116-221 (694)
103 PRK10049 pgaA outer membrane p 98.5 6.8E-07 1.5E-11 101.5 13.6 113 399-527 49-161 (765)
104 PRK11788 tetratricopeptide rep 98.5 1.8E-06 3.9E-11 90.2 15.5 66 450-515 182-247 (389)
105 PRK11447 cellulose synthase su 98.5 7.4E-07 1.6E-11 105.8 14.0 113 403-530 355-509 (1157)
106 cd00189 TPR Tetratricopeptide 98.5 1.4E-06 3.1E-11 69.6 11.6 84 450-533 2-85 (100)
107 TIGR02917 PEP_TPR_lipo putativ 98.5 1.2E-06 2.5E-11 101.2 15.2 118 397-529 123-240 (899)
108 PLN02789 farnesyltranstransfer 98.5 1.5E-06 3.2E-11 87.4 13.5 121 409-545 47-170 (320)
109 PRK11788 tetratricopeptide rep 98.5 1.8E-06 3.9E-11 90.2 14.7 101 401-516 182-283 (389)
110 PLN03088 SGT1, suppressor of 98.5 1.2E-06 2.6E-11 90.0 12.4 85 451-535 5-89 (356)
111 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.8E-07 1E-11 92.2 9.0 65 448-512 75-142 (453)
112 PF13424 TPR_12: Tetratricopep 98.5 2.9E-07 6.4E-12 72.3 6.0 67 445-511 2-75 (78)
113 KOG1310 WD40 repeat protein [G 98.5 3.1E-07 6.7E-12 93.2 7.2 114 393-521 368-484 (758)
114 KOG1840 Kinesin light chain [C 98.5 3.4E-06 7.3E-11 89.0 15.2 149 396-552 238-402 (508)
115 TIGR02917 PEP_TPR_lipo putativ 98.5 2.1E-06 4.6E-11 99.0 15.2 114 401-530 705-818 (899)
116 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.4E-06 5.2E-11 72.7 11.4 99 450-549 4-108 (119)
117 CHL00033 ycf3 photosystem I as 98.4 2.3E-06 4.9E-11 78.2 11.9 110 405-527 5-117 (168)
118 KOG2003 TPR repeat-containing 98.4 4.6E-07 9.9E-12 90.3 7.3 120 399-533 490-609 (840)
119 PF13432 TPR_16: Tetratricopep 98.4 2.5E-07 5.4E-12 69.9 4.3 64 404-482 2-65 (65)
120 COG4785 NlpI Lipoprotein NlpI, 98.4 1.1E-06 2.3E-11 80.0 8.9 110 389-516 58-167 (297)
121 KOG4162 Predicted calmodulin-b 98.4 1.1E-06 2.3E-11 93.4 10.0 103 399-516 684-788 (799)
122 PRK10049 pgaA outer membrane p 98.4 3E-06 6.6E-11 96.2 13.6 106 401-521 361-466 (765)
123 KOG2002 TPR-containing nuclear 98.4 5.1E-06 1.1E-10 90.5 14.1 118 400-529 271-389 (1018)
124 COG4783 Putative Zn-dependent 98.4 5.4E-06 1.2E-10 84.3 13.5 131 399-544 306-436 (484)
125 PRK02603 photosystem I assembl 98.4 2.2E-06 4.7E-11 78.7 9.7 84 446-529 33-119 (172)
126 PF14559 TPR_19: Tetratricopep 98.3 6.4E-07 1.4E-11 68.2 4.9 67 409-490 1-67 (68)
127 PF13424 TPR_12: Tetratricopep 98.3 2.2E-06 4.8E-11 67.3 8.0 73 397-477 3-75 (78)
128 COG4235 Cytochrome c biogenesi 98.3 6.1E-06 1.3E-10 79.7 11.7 115 398-527 155-272 (287)
129 PF09976 TPR_21: Tetratricopep 98.3 6.8E-06 1.5E-10 73.1 11.4 93 403-508 52-144 (145)
130 PF06552 TOM20_plant: Plant sp 98.3 4.5E-06 9.7E-11 74.4 9.8 99 415-528 7-126 (186)
131 PRK14574 hmsH outer membrane p 98.3 8.8E-06 1.9E-10 91.6 14.0 151 399-551 34-203 (822)
132 KOG1129 TPR repeat-containing 98.3 2.5E-06 5.5E-11 82.1 8.2 105 448-553 358-465 (478)
133 PF13371 TPR_9: Tetratricopept 98.3 4.4E-06 9.5E-11 64.5 8.0 70 406-490 2-71 (73)
134 KOG1128 Uncharacterized conser 98.2 3.1E-06 6.8E-11 89.5 8.8 131 399-545 485-615 (777)
135 COG5010 TadD Flp pilus assembl 98.2 8.3E-06 1.8E-10 76.8 10.8 86 452-537 104-189 (257)
136 KOG1125 TPR repeat-containing 98.2 1.2E-05 2.5E-10 83.3 12.6 88 448-535 430-517 (579)
137 KOG2002 TPR-containing nuclear 98.2 1.2E-05 2.6E-10 87.7 12.3 141 400-546 453-593 (1018)
138 TIGR00115 tig trigger factor. 98.2 4.7E-06 1E-10 87.5 9.0 84 168-262 146-231 (408)
139 PF14938 SNAP: Soluble NSF att 98.2 1.5E-05 3.1E-10 79.4 11.5 141 397-547 112-260 (282)
140 KOG3060 Uncharacterized conser 98.1 8.5E-05 1.8E-09 69.6 14.7 122 404-525 91-234 (289)
141 PF12688 TPR_5: Tetratrico pep 98.1 4.5E-05 9.7E-10 64.8 11.9 98 401-510 3-103 (120)
142 COG4783 Putative Zn-dependent 98.1 6.5E-05 1.4E-09 76.6 14.9 110 404-528 345-454 (484)
143 PRK14720 transcript cleavage f 98.1 4.2E-05 9.2E-10 85.5 14.8 128 400-546 32-178 (906)
144 PF12895 Apc3: Anaphase-promot 98.1 4.8E-06 1E-10 66.4 5.5 76 461-537 2-79 (84)
145 KOG1840 Kinesin light chain [C 98.1 4.6E-05 9.9E-10 80.5 14.0 142 399-548 199-356 (508)
146 PRK14574 hmsH outer membrane p 98.1 4.5E-05 9.6E-10 86.0 13.8 111 406-532 109-219 (822)
147 PF00515 TPR_1: Tetratricopept 98.1 6.6E-06 1.4E-10 53.1 4.3 34 482-515 1-34 (34)
148 cd05804 StaR_like StaR_like; a 98.0 7.3E-05 1.6E-09 77.0 14.3 116 401-516 45-182 (355)
149 PRK01490 tig trigger factor; P 98.0 1.4E-05 3E-10 84.7 9.0 84 168-262 157-242 (435)
150 PF03704 BTAD: Bacterial trans 98.0 0.00016 3.6E-09 64.2 14.5 110 401-510 8-124 (146)
151 PRK10803 tol-pal system protei 98.0 4.2E-05 9.2E-10 74.7 11.3 103 449-552 143-252 (263)
152 TIGR00540 hemY_coli hemY prote 98.0 0.00012 2.6E-09 77.0 15.6 124 395-533 80-204 (409)
153 PF13429 TPR_15: Tetratricopep 98.0 1.2E-05 2.6E-10 80.1 7.3 132 400-545 111-242 (280)
154 PRK10153 DNA-binding transcrip 98.0 7E-05 1.5E-09 80.4 13.4 118 399-517 339-488 (517)
155 PRK10747 putative protoheme IX 98.0 0.00014 2.9E-09 76.3 15.2 125 394-533 79-204 (398)
156 COG2956 Predicted N-acetylgluc 98.0 0.00013 2.8E-09 70.7 13.3 143 388-533 99-266 (389)
157 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 8.3E-05 1.8E-09 76.2 12.6 72 394-477 70-141 (453)
158 TIGR00540 hemY_coli hemY prote 98.0 8.8E-05 1.9E-09 78.0 13.5 137 398-549 262-402 (409)
159 PF09976 TPR_21: Tetratricopep 98.0 0.00038 8.1E-09 61.8 15.2 133 395-541 7-142 (145)
160 PF13431 TPR_17: Tetratricopep 97.9 7.2E-06 1.6E-10 52.8 2.8 34 470-503 1-34 (34)
161 KOG4151 Myosin assembly protei 97.9 2.7E-05 5.9E-10 83.6 8.8 126 391-527 45-172 (748)
162 KOG2076 RNA polymerase III tra 97.9 0.00024 5.3E-09 77.2 15.6 100 399-513 173-272 (895)
163 KOG1156 N-terminal acetyltrans 97.9 7.1E-05 1.5E-09 78.5 11.2 117 401-532 9-125 (700)
164 KOG1173 Anaphase-promoting com 97.9 5.7E-05 1.2E-09 78.1 10.4 135 399-533 346-506 (611)
165 KOG4648 Uncharacterized conser 97.9 2.2E-05 4.7E-10 76.2 6.9 63 453-515 102-164 (536)
166 COG4105 ComL DNA uptake lipopr 97.9 0.00062 1.3E-08 64.6 16.5 128 399-538 34-175 (254)
167 PF07719 TPR_2: Tetratricopept 97.9 2.4E-05 5.3E-10 50.3 5.0 34 482-515 1-34 (34)
168 cd05804 StaR_like StaR_like; a 97.9 6.2E-05 1.4E-09 77.5 10.8 98 401-513 116-217 (355)
169 COG0544 Tig FKBP-type peptidyl 97.9 2.2E-05 4.8E-10 81.8 7.0 81 169-262 158-242 (441)
170 KOG4234 TPR repeat-containing 97.9 0.0002 4.3E-09 64.7 11.7 98 453-551 100-202 (271)
171 PF13428 TPR_14: Tetratricopep 97.9 3.2E-05 7E-10 53.2 5.4 42 483-524 2-43 (44)
172 PF15015 NYD-SP12_N: Spermatog 97.9 0.00011 2.4E-09 73.3 10.9 113 398-510 175-290 (569)
173 PF12688 TPR_5: Tetratrico pep 97.8 0.00035 7.7E-09 59.4 12.2 85 450-534 3-93 (120)
174 KOG1174 Anaphase-promoting com 97.8 0.00023 5E-09 70.9 11.9 132 400-531 233-383 (564)
175 KOG1130 Predicted G-alpha GTPa 97.8 5.9E-05 1.3E-09 75.0 7.7 113 393-514 189-307 (639)
176 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 0.00014 2.9E-09 51.8 7.5 48 483-530 2-49 (53)
177 PF12569 NARP1: NMDA receptor- 97.8 0.00017 3.8E-09 77.0 11.9 103 444-548 190-292 (517)
178 KOG1129 TPR repeat-containing 97.8 0.00012 2.6E-09 70.9 9.1 98 404-517 228-325 (478)
179 COG4235 Cytochrome c biogenesi 97.8 0.00059 1.3E-08 66.1 13.9 123 414-552 137-262 (287)
180 COG2956 Predicted N-acetylgluc 97.8 0.00079 1.7E-08 65.4 14.5 114 395-523 176-290 (389)
181 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00012 2.5E-09 75.4 9.3 61 451-511 237-297 (395)
182 PF00515 TPR_1: Tetratricopept 97.7 3.5E-05 7.5E-10 49.6 3.5 33 449-481 2-34 (34)
183 KOG4162 Predicted calmodulin-b 97.7 0.00018 3.9E-09 77.0 10.5 113 406-533 657-771 (799)
184 PRK10747 putative protoheme IX 97.7 0.00045 9.8E-09 72.4 13.0 127 399-545 263-389 (398)
185 PRK11906 transcriptional regul 97.7 0.00034 7.3E-09 71.9 11.4 100 414-528 273-384 (458)
186 COG1729 Uncharacterized protei 97.7 0.00034 7.3E-09 67.0 10.7 104 451-555 144-253 (262)
187 KOG2003 TPR repeat-containing 97.7 0.00029 6.3E-09 70.8 10.5 154 396-552 555-727 (840)
188 PF14938 SNAP: Soluble NSF att 97.7 0.00028 6E-09 70.3 10.4 105 398-512 74-185 (282)
189 KOG0545 Aryl-hydrocarbon recep 97.6 2.2E-05 4.9E-10 72.8 1.9 80 35-115 8-91 (329)
190 PF13525 YfiO: Outer membrane 97.6 0.0019 4E-08 60.9 15.1 114 400-525 43-184 (203)
191 PF12968 DUF3856: Domain of Un 97.6 0.0016 3.4E-08 53.8 12.1 106 403-511 13-129 (144)
192 PF13428 TPR_14: Tetratricopep 97.6 0.00013 2.7E-09 50.2 4.9 42 450-491 3-44 (44)
193 COG4700 Uncharacterized protei 97.6 0.0019 4.1E-08 57.9 12.8 138 399-552 89-228 (251)
194 KOG1128 Uncharacterized conser 97.5 0.00058 1.3E-08 72.8 11.1 83 452-534 489-571 (777)
195 PF13512 TPR_18: Tetratricopep 97.5 0.0013 2.8E-08 57.1 11.3 67 451-517 13-82 (142)
196 KOG4642 Chaperone-dependent E3 97.5 0.00016 3.5E-09 67.1 6.0 76 453-528 15-90 (284)
197 KOG1127 TPR repeat-containing 97.5 0.00076 1.6E-08 74.1 11.1 133 402-534 495-648 (1238)
198 PF13181 TPR_8: Tetratricopept 97.5 0.0002 4.4E-09 45.9 4.2 33 483-515 2-34 (34)
199 KOG1586 Protein required for f 97.5 0.004 8.7E-08 57.9 13.9 135 402-546 116-258 (288)
200 PRK15331 chaperone protein Sic 97.4 0.0013 2.7E-08 58.4 10.1 84 451-534 40-123 (165)
201 PF04733 Coatomer_E: Coatomer 97.4 0.00066 1.4E-08 67.5 9.5 108 408-532 140-251 (290)
202 KOG4555 TPR repeat-containing 97.4 0.0012 2.7E-08 55.5 9.4 63 453-515 48-110 (175)
203 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0024 5.1E-08 65.9 13.7 107 412-536 182-288 (395)
204 PF07719 TPR_2: Tetratricopept 97.4 0.00024 5.2E-09 45.5 4.2 33 449-481 2-34 (34)
205 PRK10941 hypothetical protein; 97.4 0.0016 3.6E-08 63.5 11.8 81 445-525 178-258 (269)
206 PRK14720 transcript cleavage f 97.4 0.00082 1.8E-08 75.4 10.8 110 400-512 66-179 (906)
207 KOG2796 Uncharacterized conser 97.4 0.0027 5.9E-08 59.9 12.4 70 447-516 251-320 (366)
208 KOG1127 TPR repeat-containing 97.4 0.0013 2.8E-08 72.4 11.8 74 455-528 9-83 (1238)
209 PRK10866 outer membrane biogen 97.4 0.0021 4.5E-08 62.3 12.3 69 451-519 35-106 (243)
210 KOG4507 Uncharacterized conser 97.3 0.00063 1.4E-08 70.6 8.2 106 408-527 616-721 (886)
211 KOG1156 N-terminal acetyltrans 97.3 0.0017 3.7E-08 68.5 11.1 117 398-529 40-156 (700)
212 KOG3060 Uncharacterized conser 97.3 0.0057 1.2E-07 57.6 13.3 86 460-545 132-219 (289)
213 KOG0551 Hsp90 co-chaperone CNS 97.3 0.004 8.7E-08 60.8 12.1 76 451-528 84-163 (390)
214 KOG4814 Uncharacterized conser 97.3 0.0022 4.7E-08 67.4 11.0 105 398-511 353-457 (872)
215 PRK11906 transcriptional regul 97.3 0.0011 2.4E-08 68.2 8.8 87 415-516 320-406 (458)
216 KOG1130 Predicted G-alpha GTPa 97.2 0.002 4.3E-08 64.4 9.5 103 400-511 236-344 (639)
217 KOG0495 HAT repeat protein [RN 97.2 0.0035 7.5E-08 66.2 11.5 86 448-533 685-770 (913)
218 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0012 2.5E-08 47.1 5.7 41 450-490 3-43 (53)
219 PF04733 Coatomer_E: Coatomer 97.1 0.0013 2.8E-08 65.5 7.6 91 413-518 181-272 (290)
220 KOG1174 Anaphase-promoting com 97.1 0.0025 5.3E-08 63.9 9.2 116 399-529 334-451 (564)
221 KOG1941 Acetylcholine receptor 97.1 0.0054 1.2E-07 60.5 10.9 136 398-533 5-179 (518)
222 KOG3785 Uncharacterized conser 97.0 0.0046 1E-07 60.8 10.0 103 408-528 31-133 (557)
223 KOG4340 Uncharacterized conser 97.0 0.0016 3.4E-08 62.5 6.7 94 398-506 143-265 (459)
224 COG4785 NlpI Lipoprotein NlpI, 97.0 0.0019 4.1E-08 59.3 6.9 72 445-516 62-133 (297)
225 COG3071 HemY Uncharacterized e 97.0 0.019 4.1E-07 57.6 14.1 127 393-534 78-205 (400)
226 KOG0495 HAT repeat protein [RN 97.0 0.0059 1.3E-07 64.6 10.9 127 404-530 589-733 (913)
227 KOG3785 Uncharacterized conser 97.0 0.024 5.2E-07 55.9 14.2 73 451-523 154-226 (557)
228 KOG3364 Membrane protein invol 96.9 0.0073 1.6E-07 51.3 9.2 84 447-530 31-119 (149)
229 KOG3824 Huntingtin interacting 96.9 0.0049 1.1E-07 59.4 8.7 74 451-524 119-192 (472)
230 KOG1308 Hsp70-interacting prot 96.9 0.00057 1.2E-08 66.9 2.4 104 456-559 122-240 (377)
231 PF06552 TOM20_plant: Plant sp 96.8 0.011 2.3E-07 53.2 10.1 68 463-530 6-83 (186)
232 KOG0376 Serine-threonine phosp 96.8 0.0014 3E-08 67.2 5.0 71 452-524 8-78 (476)
233 PF13174 TPR_6: Tetratricopept 96.8 0.0023 5E-08 40.4 4.1 32 484-515 2-33 (33)
234 PF13181 TPR_8: Tetratricopept 96.8 0.0017 3.7E-08 41.5 3.4 33 449-481 2-34 (34)
235 PF12569 NARP1: NMDA receptor- 96.7 0.013 2.7E-07 62.9 11.7 100 450-549 6-109 (517)
236 COG2976 Uncharacterized protei 96.7 0.033 7.1E-07 50.7 12.0 102 401-515 91-192 (207)
237 PF13176 TPR_7: Tetratricopept 96.7 0.0014 3.1E-08 42.7 2.5 28 484-511 1-28 (36)
238 KOG2376 Signal recognition par 96.6 0.018 3.8E-07 60.5 11.2 115 400-517 13-145 (652)
239 smart00028 TPR Tetratricopepti 96.5 0.0038 8.2E-08 38.4 3.8 32 483-514 2-33 (34)
240 COG4105 ComL DNA uptake lipopr 96.5 0.015 3.3E-07 55.3 9.3 69 450-518 36-107 (254)
241 KOG1941 Acetylcholine receptor 96.5 0.021 4.6E-07 56.5 10.3 101 403-512 126-236 (518)
242 PF10300 DUF3808: Protein of u 96.5 0.021 4.5E-07 61.0 11.1 103 399-513 267-378 (468)
243 KOG3081 Vesicle coat complex C 96.3 0.053 1.1E-06 51.7 11.4 130 403-532 112-257 (299)
244 KOG1585 Protein required for f 96.3 0.04 8.6E-07 51.8 10.3 131 404-545 115-251 (308)
245 KOG2396 HAT (Half-A-TPR) repea 96.2 0.058 1.3E-06 55.7 11.9 100 418-532 90-190 (568)
246 PF09986 DUF2225: Uncharacteri 96.2 0.14 3E-06 48.5 13.7 100 408-515 86-198 (214)
247 KOG1586 Protein required for f 96.2 0.053 1.2E-06 50.6 10.3 109 398-516 73-188 (288)
248 PF13176 TPR_7: Tetratricopept 96.1 0.0074 1.6E-07 39.2 3.3 28 450-477 1-28 (36)
249 KOG4507 Uncharacterized conser 96.1 0.021 4.6E-07 59.7 8.1 149 401-563 214-366 (886)
250 PF13174 TPR_6: Tetratricopept 96.1 0.0073 1.6E-07 38.0 3.2 32 450-481 2-33 (33)
251 COG3118 Thioredoxin domain-con 96.0 0.22 4.7E-06 48.5 14.3 114 401-529 136-285 (304)
252 PRK10153 DNA-binding transcrip 96.0 0.072 1.6E-06 57.5 12.5 128 416-545 337-481 (517)
253 KOG2471 TPR repeat-containing 96.0 0.02 4.3E-07 58.8 7.2 120 400-525 241-378 (696)
254 PF13431 TPR_17: Tetratricopep 96.0 0.0039 8.4E-08 40.0 1.5 34 421-469 1-34 (34)
255 PF14561 TPR_20: Tetratricopep 95.9 0.067 1.4E-06 43.0 8.9 67 467-533 7-75 (90)
256 PF06957 COPI_C: Coatomer (COP 95.9 0.055 1.2E-06 55.9 10.5 123 395-517 200-335 (422)
257 COG0457 NrfG FOG: TPR repeat [ 95.9 0.22 4.8E-06 45.9 14.2 58 457-514 139-199 (291)
258 KOG2053 Mitochondrial inherita 95.8 0.11 2.3E-06 57.4 12.5 111 408-534 18-128 (932)
259 smart00028 TPR Tetratricopepti 95.8 0.015 3.3E-07 35.5 3.9 32 450-481 3-34 (34)
260 COG0457 NrfG FOG: TPR repeat [ 95.8 0.088 1.9E-06 48.7 10.8 96 408-515 139-235 (291)
261 PF08631 SPO22: Meiosis protei 95.8 0.39 8.4E-06 47.6 15.7 123 389-513 25-152 (278)
262 PF05843 Suf: Suppressor of fo 95.7 0.099 2.1E-06 51.9 11.0 127 407-549 9-139 (280)
263 COG4976 Predicted methyltransf 95.6 0.018 3.8E-07 53.6 4.9 61 457-517 4-64 (287)
264 PRK04841 transcriptional regul 95.6 0.23 4.9E-06 58.1 15.2 101 404-513 496-604 (903)
265 COG2912 Uncharacterized conser 95.5 0.11 2.4E-06 50.1 10.0 76 445-520 178-253 (269)
266 COG2976 Uncharacterized protei 95.5 0.34 7.4E-06 44.2 12.5 148 413-564 48-205 (207)
267 KOG3824 Huntingtin interacting 95.5 0.026 5.5E-07 54.7 5.6 84 394-492 111-194 (472)
268 PF04781 DUF627: Protein of un 95.4 0.15 3.2E-06 42.1 9.1 103 405-512 2-108 (111)
269 PF10602 RPN7: 26S proteasome 95.4 0.23 5E-06 45.5 11.5 105 396-512 33-143 (177)
270 KOG1915 Cell cycle control pro 95.3 0.28 6.1E-06 50.5 12.3 135 411-546 378-536 (677)
271 KOG2376 Signal recognition par 95.3 0.55 1.2E-05 49.8 14.7 83 399-481 175-257 (652)
272 PF04184 ST7: ST7 protein; In 95.2 0.2 4.4E-06 52.0 11.5 128 389-516 181-330 (539)
273 KOG4340 Uncharacterized conser 95.0 0.18 3.9E-06 48.8 9.7 86 409-509 20-105 (459)
274 KOG1585 Protein required for f 95.0 0.69 1.5E-05 43.8 13.2 104 402-514 34-142 (308)
275 PLN03081 pentatricopeptide (PP 95.0 0.13 2.7E-06 58.3 10.3 62 450-511 496-557 (697)
276 KOG2610 Uncharacterized conser 94.9 0.42 9E-06 47.2 11.9 108 400-507 104-234 (491)
277 PF10952 DUF2753: Protein of u 94.9 0.2 4.3E-06 41.9 8.2 81 401-481 3-87 (140)
278 PF03704 BTAD: Bacterial trans 94.9 0.54 1.2E-05 41.3 12.1 95 453-548 11-127 (146)
279 COG3947 Response regulator con 94.8 0.3 6.6E-06 47.2 10.6 75 435-509 266-340 (361)
280 PRK04841 transcriptional regul 94.8 0.2 4.2E-06 58.6 11.5 99 403-511 456-560 (903)
281 COG4700 Uncharacterized protei 94.8 0.44 9.6E-06 43.2 10.8 100 451-550 92-209 (251)
282 PLN03081 pentatricopeptide (PP 94.7 0.36 7.7E-06 54.7 13.1 143 400-545 392-556 (697)
283 KOG3081 Vesicle coat complex C 94.7 0.62 1.3E-05 44.7 12.3 92 412-518 186-278 (299)
284 KOG1915 Cell cycle control pro 94.7 0.42 9E-06 49.3 11.6 97 405-516 79-175 (677)
285 COG3629 DnrI DNA-binding trans 94.2 0.37 8.1E-06 47.1 10.0 74 438-511 143-216 (280)
286 PLN03218 maturation of RBCL 1; 94.1 1.1 2.4E-05 52.7 15.5 115 400-514 508-648 (1060)
287 PF13374 TPR_10: Tetratricopep 94.0 0.082 1.8E-06 35.1 3.8 29 449-477 3-31 (42)
288 KOG4814 Uncharacterized conser 94.0 0.45 9.7E-06 50.8 10.6 77 446-522 352-434 (872)
289 PF02259 FAT: FAT domain; Int 93.9 0.94 2E-05 46.2 13.1 113 402-514 187-341 (352)
290 COG3071 HemY Uncharacterized e 93.9 0.82 1.8E-05 46.2 11.7 111 404-533 268-378 (400)
291 PF10300 DUF3808: Protein of u 93.7 0.59 1.3E-05 50.0 11.4 74 451-524 270-347 (468)
292 PLN03218 maturation of RBCL 1; 93.6 1.2 2.5E-05 52.5 14.4 113 399-512 472-609 (1060)
293 PLN03077 Protein ECB2; Provisi 93.6 0.84 1.8E-05 53.1 13.4 131 401-533 556-708 (857)
294 KOG1070 rRNA processing protei 93.6 1.1 2.4E-05 52.1 13.4 66 449-514 1531-1596(1710)
295 PF10579 Rapsyn_N: Rapsyn N-te 93.4 0.49 1.1E-05 36.4 7.3 68 397-476 4-71 (80)
296 PF13374 TPR_10: Tetratricopep 93.4 0.18 3.9E-06 33.4 4.6 30 482-511 2-31 (42)
297 KOG2471 TPR repeat-containing 93.4 0.088 1.9E-06 54.2 4.2 100 396-495 280-382 (696)
298 PF12862 Apc5: Anaphase-promot 93.2 0.51 1.1E-05 38.2 7.7 64 408-477 7-70 (94)
299 KOG3364 Membrane protein invol 93.1 0.77 1.7E-05 39.3 8.7 43 448-490 71-113 (149)
300 KOG2796 Uncharacterized conser 92.9 1.9 4.1E-05 41.4 11.8 115 403-531 181-301 (366)
301 PF12862 Apc5: Anaphase-promot 92.7 0.45 9.9E-06 38.5 6.8 58 457-514 7-73 (94)
302 PLN03077 Protein ECB2; Provisi 92.7 0.94 2E-05 52.6 12.0 61 450-510 659-719 (857)
303 PF09613 HrpB1_HrpK: Bacterial 92.5 1.8 3.9E-05 38.5 10.7 84 449-532 11-94 (160)
304 KOG0292 Vesicle coat complex C 92.2 2.1 4.6E-05 47.5 12.6 125 395-519 987-1121(1202)
305 KOG1070 rRNA processing protei 92.0 1.7 3.8E-05 50.6 12.2 82 447-528 1563-1646(1710)
306 PRK10941 hypothetical protein; 91.8 0.73 1.6E-05 45.2 8.2 76 402-492 184-259 (269)
307 KOG2300 Uncharacterized conser 91.7 4.2 9.1E-05 42.4 13.5 101 397-512 365-475 (629)
308 COG5191 Uncharacterized conser 91.7 0.91 2E-05 44.4 8.4 76 450-525 109-185 (435)
309 PRK13184 pknD serine/threonine 91.6 2.3 4.9E-05 49.0 12.9 116 404-532 480-602 (932)
310 PF10602 RPN7: 26S proteasome 91.4 5.1 0.00011 36.6 12.8 77 447-523 35-116 (177)
311 PF10516 SHNi-TPR: SHNi-TPR; 91.1 0.39 8.3E-06 31.5 3.7 29 483-511 2-30 (38)
312 PF04184 ST7: ST7 protein; In 91.1 2.2 4.8E-05 44.7 11.0 44 482-525 259-304 (539)
313 PF08631 SPO22: Meiosis protei 90.9 10 0.00023 37.4 15.6 104 409-519 3-124 (278)
314 PF07720 TPR_3: Tetratricopept 90.9 0.79 1.7E-05 29.7 5.0 33 483-515 2-36 (36)
315 PF05843 Suf: Suppressor of fo 90.6 1.7 3.8E-05 43.0 9.7 98 451-549 4-102 (280)
316 KOG0686 COP9 signalosome, subu 90.3 1.2 2.5E-05 45.3 7.9 98 400-509 151-256 (466)
317 TIGR03504 FimV_Cterm FimV C-te 90.0 1.1 2.3E-05 30.5 5.2 25 486-510 3-27 (44)
318 PF07079 DUF1347: Protein of u 89.8 11 0.00025 39.1 14.5 76 451-530 465-544 (549)
319 PF02259 FAT: FAT domain; Int 89.5 6.3 0.00014 40.1 13.2 122 397-529 144-305 (352)
320 COG4976 Predicted methyltransf 89.5 0.51 1.1E-05 44.2 4.4 60 407-481 3-62 (287)
321 PF11817 Foie-gras_1: Foie gra 89.4 1.6 3.5E-05 42.3 8.3 66 402-476 181-246 (247)
322 PF09986 DUF2225: Uncharacteri 89.0 1.9 4.2E-05 40.7 8.2 86 397-491 123-209 (214)
323 KOG2422 Uncharacterized conser 88.4 14 0.00031 39.5 14.4 118 326-482 256-377 (665)
324 KOG2300 Uncharacterized conser 88.3 4.2 9E-05 42.4 10.3 102 397-506 44-151 (629)
325 KOG2610 Uncharacterized conser 88.3 2.7 5.9E-05 41.7 8.6 66 451-516 212-283 (491)
326 PF04910 Tcf25: Transcriptiona 87.9 4.9 0.00011 41.3 10.9 108 399-507 40-164 (360)
327 KOG1550 Extracellular protein 87.8 8.1 0.00018 42.4 13.2 92 402-512 291-394 (552)
328 PF07721 TPR_4: Tetratricopept 87.8 0.74 1.6E-05 27.2 2.9 24 483-506 2-25 (26)
329 cd02681 MIT_calpain7_1 MIT: do 87.4 3.1 6.7E-05 32.1 6.8 35 397-431 4-38 (76)
330 PF10345 Cohesin_load: Cohesin 86.4 18 0.00039 40.3 15.1 117 399-515 301-445 (608)
331 cd02683 MIT_1 MIT: domain cont 86.4 3.2 6.9E-05 32.2 6.5 35 397-431 4-38 (77)
332 KOG2053 Mitochondrial inherita 86.4 4 8.8E-05 45.6 9.5 88 460-548 21-108 (932)
333 PF08424 NRDE-2: NRDE-2, neces 86.3 16 0.00036 36.9 13.6 91 464-554 47-139 (321)
334 PF10255 Paf67: RNA polymerase 86.0 2.5 5.3E-05 43.8 7.4 103 445-547 161-267 (404)
335 PF12968 DUF3856: Domain of Un 85.5 6.3 0.00014 33.1 8.0 75 399-477 55-129 (144)
336 cd02682 MIT_AAA_Arch MIT: doma 85.5 5.9 0.00013 30.4 7.4 35 397-431 4-38 (75)
337 PF04910 Tcf25: Transcriptiona 85.2 4.6 0.0001 41.6 9.0 102 412-516 7-138 (360)
338 PF14863 Alkyl_sulf_dimr: Alky 85.0 4.9 0.00011 35.2 7.8 52 481-532 69-120 (141)
339 PF09613 HrpB1_HrpK: Bacterial 85.0 28 0.00061 31.1 13.8 112 399-527 10-121 (160)
340 COG3898 Uncharacterized membra 85.0 8.7 0.00019 39.1 10.3 103 405-528 269-374 (531)
341 cd02677 MIT_SNX15 MIT: domain 84.8 5.2 0.00011 30.8 7.0 36 396-431 3-38 (75)
342 TIGR02561 HrpB1_HrpK type III 84.6 12 0.00025 33.0 9.7 82 451-532 13-94 (153)
343 COG3118 Thioredoxin domain-con 84.5 9.1 0.0002 37.6 10.0 54 454-507 140-193 (304)
344 PF10516 SHNi-TPR: SHNi-TPR; 84.5 1.5 3.3E-05 28.7 3.3 29 450-478 3-31 (38)
345 KOG3617 WD40 and TPR repeat-co 84.2 11 0.00024 42.0 11.4 63 449-511 913-996 (1416)
346 PF13281 DUF4071: Domain of un 84.1 14 0.00029 38.0 11.6 98 448-545 141-254 (374)
347 cd02684 MIT_2 MIT: domain cont 83.6 4.9 0.00011 30.9 6.4 36 396-431 3-38 (75)
348 COG3898 Uncharacterized membra 83.6 21 0.00045 36.5 12.2 108 409-525 198-305 (531)
349 PF04212 MIT: MIT (microtubule 82.9 4.9 0.00011 30.2 6.2 35 397-431 3-37 (69)
350 KOG1310 WD40 repeat protein [G 82.9 3.9 8.4E-05 43.1 7.1 74 461-534 387-463 (758)
351 PF10345 Cohesin_load: Cohesin 82.9 27 0.00058 38.9 14.5 116 398-523 58-182 (608)
352 cd02678 MIT_VPS4 MIT: domain c 82.6 6.1 0.00013 30.3 6.7 36 396-431 3-38 (75)
353 COG0790 FOG: TPR repeat, SEL1 82.0 28 0.00061 34.4 13.2 105 401-523 111-230 (292)
354 COG4455 ImpE Protein of avirul 82.0 10 0.00022 35.5 8.8 69 457-525 10-78 (273)
355 cd02679 MIT_spastin MIT: domai 81.4 11 0.00024 29.2 7.6 66 396-461 5-76 (79)
356 PF15015 NYD-SP12_N: Spermatog 81.4 12 0.00026 38.5 9.7 53 487-539 233-285 (569)
357 COG2909 MalT ATP-dependent tra 81.2 71 0.0015 36.3 16.4 109 397-511 413-526 (894)
358 PHA02537 M terminase endonucle 81.2 20 0.00043 34.2 10.8 119 409-531 93-226 (230)
359 cd02656 MIT MIT: domain contai 80.7 9.8 0.00021 29.1 7.2 36 396-431 3-38 (75)
360 PF10373 EST1_DNA_bind: Est1 D 80.4 5.4 0.00012 39.1 7.3 62 467-528 1-62 (278)
361 KOG1839 Uncharacterized protei 80.2 14 0.00031 43.3 11.1 108 398-512 972-1087(1236)
362 KOG0530 Protein farnesyltransf 80.0 44 0.00096 32.4 12.4 120 409-544 53-174 (318)
363 KOG1550 Extracellular protein 79.8 23 0.00049 38.9 12.4 113 399-525 244-369 (552)
364 PF10373 EST1_DNA_bind: Est1 D 79.8 4.8 0.0001 39.5 6.7 62 418-494 1-62 (278)
365 COG3914 Spy Predicted O-linked 79.5 19 0.00042 38.6 11.0 67 454-520 73-140 (620)
366 PF14561 TPR_20: Tetratricopep 79.3 9.3 0.0002 30.6 6.9 32 450-481 24-55 (90)
367 COG2912 Uncharacterized conser 78.7 7.1 0.00015 37.9 7.0 72 405-491 187-258 (269)
368 PF07721 TPR_4: Tetratricopept 78.4 3 6.5E-05 24.6 2.9 23 450-472 3-25 (26)
369 PRK15180 Vi polysaccharide bio 78.3 15 0.00032 38.4 9.4 100 404-518 294-393 (831)
370 PF11817 Foie-gras_1: Foie gra 77.9 22 0.00047 34.5 10.4 83 417-508 156-244 (247)
371 KOG1497 COP9 signalosome, subu 77.7 73 0.0016 31.8 13.4 88 445-533 100-197 (399)
372 smart00745 MIT Microtubule Int 77.0 20 0.00044 27.4 8.1 36 396-431 5-40 (77)
373 cd02682 MIT_AAA_Arch MIT: doma 76.9 12 0.00025 28.8 6.4 18 500-517 31-48 (75)
374 PF04781 DUF627: Protein of un 76.9 39 0.00085 28.1 9.9 62 454-515 2-77 (111)
375 KOG0530 Protein farnesyltransf 76.9 15 0.00032 35.5 8.3 86 460-545 55-141 (318)
376 PF10579 Rapsyn_N: Rapsyn N-te 76.5 23 0.00051 27.4 7.8 58 453-510 11-71 (80)
377 KOG2047 mRNA splicing factor [ 76.5 36 0.00077 37.2 11.9 33 396-428 422-454 (835)
378 KOG3617 WD40 and TPR repeat-co 75.9 14 0.00031 41.2 8.9 103 408-510 809-940 (1416)
379 PF14863 Alkyl_sulf_dimr: Alky 75.8 6.6 0.00014 34.4 5.5 49 450-498 72-120 (141)
380 KOG0739 AAA+-type ATPase [Post 75.6 13 0.00027 36.7 7.7 37 394-430 5-41 (439)
381 cd02680 MIT_calpain7_2 MIT: do 75.5 4.6 0.0001 31.0 3.9 35 397-431 4-38 (75)
382 COG0790 FOG: TPR repeat, SEL1 75.4 30 0.00064 34.2 11.0 80 416-515 172-270 (292)
383 KOG2581 26S proteasome regulat 74.4 20 0.00044 36.7 9.0 67 450-516 211-281 (493)
384 PF07720 TPR_3: Tetratricopept 74.2 7.9 0.00017 25.0 4.1 31 451-481 4-36 (36)
385 PF10255 Paf67: RNA polymerase 73.3 6 0.00013 41.1 5.3 59 451-510 125-192 (404)
386 PF09670 Cas_Cas02710: CRISPR- 73.1 43 0.00093 34.8 11.6 102 397-511 129-270 (379)
387 PF13281 DUF4071: Domain of un 72.6 31 0.00067 35.5 10.1 66 451-516 182-260 (374)
388 PF09205 DUF1955: Domain of un 72.1 39 0.00085 29.2 8.8 61 451-511 88-149 (161)
389 COG5091 SGT1 Suppressor of G2 71.5 13 0.00029 35.7 6.6 124 407-536 3-132 (368)
390 PF08424 NRDE-2: NRDE-2, neces 71.1 29 0.00062 35.1 9.7 78 469-547 6-95 (321)
391 TIGR03504 FimV_Cterm FimV C-te 70.8 6.4 0.00014 26.8 3.3 26 451-476 2-27 (44)
392 KOG1463 26S proteasome regulat 70.7 56 0.0012 32.9 10.9 118 400-527 210-329 (411)
393 TIGR02561 HrpB1_HrpK type III 70.5 62 0.0013 28.6 10.0 49 451-499 47-95 (153)
394 KOG1839 Uncharacterized protei 70.5 22 0.00047 41.9 9.3 107 397-511 930-1044(1236)
395 KOG3783 Uncharacterized conser 70.5 35 0.00076 36.4 10.1 65 451-515 452-524 (546)
396 KOG2047 mRNA splicing factor [ 70.4 1.2E+02 0.0026 33.3 14.0 112 402-525 390-520 (835)
397 COG3914 Spy Predicted O-linked 69.7 52 0.0011 35.5 11.2 75 448-522 101-182 (620)
398 KOG1464 COP9 signalosome, subu 69.6 61 0.0013 31.5 10.6 51 460-510 39-93 (440)
399 KOG0529 Protein geranylgeranyl 68.3 78 0.0017 32.7 11.7 73 460-532 87-161 (421)
400 KOG2422 Uncharacterized conser 67.4 20 0.00044 38.4 7.6 116 403-521 239-382 (665)
401 COG4941 Predicted RNA polymera 66.0 63 0.0014 32.5 10.2 74 451-524 332-407 (415)
402 TIGR02710 CRISPR-associated pr 65.4 74 0.0016 32.8 11.1 63 400-472 131-195 (380)
403 smart00386 HAT HAT (Half-A-TPR 65.3 16 0.00034 22.0 4.2 29 496-524 1-29 (33)
404 PF11207 DUF2989: Protein of u 64.7 24 0.00052 32.8 6.8 47 481-528 140-190 (203)
405 KOG3540 Beta amyloid precursor 63.6 62 0.0013 33.8 9.9 106 402-516 270-382 (615)
406 PF07079 DUF1347: Protein of u 62.3 59 0.0013 34.0 9.6 99 402-510 9-107 (549)
407 COG3947 Response regulator con 61.8 34 0.00074 33.6 7.4 50 482-531 279-328 (361)
408 PF11846 DUF3366: Domain of un 61.5 38 0.00081 31.3 7.8 52 463-515 126-177 (193)
409 smart00745 MIT Microtubule Int 60.8 31 0.00068 26.4 6.0 15 501-515 34-48 (77)
410 cd02683 MIT_1 MIT: domain cont 59.7 37 0.0008 26.2 6.1 16 501-516 32-47 (77)
411 PF00244 14-3-3: 14-3-3 protei 59.2 30 0.00064 33.3 6.8 55 415-476 142-197 (236)
412 PF08626 TRAPPC9-Trs120: Trans 58.4 1.7E+02 0.0036 35.6 14.2 119 395-514 238-437 (1185)
413 PF04053 Coatomer_WDAD: Coatom 56.3 36 0.00079 36.1 7.4 24 451-474 350-373 (443)
414 KOG2114 Vacuolar assembly/sort 55.9 46 0.00099 37.4 8.0 34 398-431 367-400 (933)
415 PRK13184 pknD serine/threonine 55.8 59 0.0013 37.9 9.4 68 451-520 555-629 (932)
416 KOG2041 WD40 repeat protein [G 55.6 38 0.00081 37.3 7.2 19 92-110 164-182 (1189)
417 PF04212 MIT: MIT (microtubule 55.5 39 0.00085 25.2 5.6 20 490-509 13-32 (69)
418 KOG0985 Vesicle coat protein c 55.4 2E+02 0.0044 33.5 12.8 104 404-512 1053-1163(1666)
419 PF12652 CotJB: CotJB protein; 55.2 48 0.001 25.7 5.9 56 491-550 4-59 (78)
420 COG4649 Uncharacterized protei 55.1 1E+02 0.0023 28.0 8.7 59 448-506 94-156 (221)
421 KOG2041 WD40 repeat protein [G 54.8 1.3E+02 0.0029 33.3 10.9 62 446-507 794-877 (1189)
422 KOG3783 Uncharacterized conser 54.5 90 0.0019 33.4 9.6 93 403-509 271-373 (546)
423 COG1747 Uncharacterized N-term 54.3 1.1E+02 0.0025 32.5 10.2 95 450-548 68-162 (711)
424 PF08238 Sel1: Sel1 repeat; I 54.2 28 0.00061 22.1 4.1 30 482-511 1-37 (39)
425 KOG4459 Membrane-associated pr 54.1 73 0.0016 33.3 8.7 141 402-546 34-201 (471)
426 PF15469 Sec5: Exocyst complex 53.9 56 0.0012 29.8 7.5 25 408-432 95-119 (182)
427 PF10952 DUF2753: Protein of u 53.2 45 0.00098 28.3 5.8 82 451-532 4-109 (140)
428 COG5159 RPN6 26S proteasome re 53.0 1.8E+02 0.0038 28.8 10.5 64 403-473 7-70 (421)
429 KOG0546 HSP90 co-chaperone CPR 52.3 11 0.00024 37.9 2.5 79 405-498 281-359 (372)
430 KOG0276 Vesicle coat complex C 52.2 57 0.0012 35.4 7.8 51 456-511 645-695 (794)
431 KOG0889 Histone acetyltransfer 52.1 1.8E+02 0.0038 38.6 12.9 99 445-546 2809-2915(3550)
432 smart00671 SEL1 Sel1-like repe 51.9 34 0.00073 21.2 4.1 29 483-511 2-34 (36)
433 COG2909 MalT ATP-dependent tra 50.9 1.2E+02 0.0026 34.5 10.4 89 399-497 458-552 (894)
434 COG4455 ImpE Protein of avirul 49.7 1.8E+02 0.0039 27.6 9.7 63 405-482 7-69 (273)
435 KOG0985 Vesicle coat protein c 49.6 1.2E+02 0.0025 35.4 9.9 105 401-528 1196-1325(1666)
436 PRK15180 Vi polysaccharide bio 49.2 35 0.00077 35.8 5.6 61 456-516 365-425 (831)
437 PF12739 TRAPPC-Trs85: ER-Golg 49.1 1.5E+02 0.0032 31.2 10.6 102 401-511 210-329 (414)
438 PF12854 PPR_1: PPR repeat 48.5 46 0.001 20.9 4.2 27 481-507 6-32 (34)
439 KOG3807 Predicted membrane pro 46.8 2.5E+02 0.0055 28.3 10.7 61 450-510 277-339 (556)
440 PF07163 Pex26: Pex26 protein; 45.6 2.5E+02 0.0055 27.6 10.4 112 404-517 40-152 (309)
441 cd02656 MIT MIT: domain contai 45.3 60 0.0013 24.7 5.3 14 496-509 20-33 (75)
442 PF12925 APP_E2: E2 domain of 44.9 2.6E+02 0.0056 25.9 10.9 82 446-530 96-179 (193)
443 KOG0529 Protein geranylgeranyl 44.7 1.3E+02 0.0027 31.3 8.7 100 413-527 89-194 (421)
444 PF11207 DUF2989: Protein of u 44.7 46 0.001 30.9 5.2 50 408-468 149-198 (203)
445 PF02064 MAS20: MAS20 protein 44.1 46 0.001 28.2 4.7 40 392-431 56-95 (121)
446 KOG3616 Selective LIM binding 43.3 84 0.0018 34.9 7.5 48 456-505 799-847 (1636)
447 COG3014 Uncharacterized protei 42.9 2E+02 0.0043 29.1 9.4 131 402-533 61-244 (449)
448 COG4649 Uncharacterized protei 42.3 2.7E+02 0.0059 25.4 12.6 99 401-510 96-195 (221)
449 cd02678 MIT_VPS4 MIT: domain c 42.3 1.5E+02 0.0033 22.5 7.6 19 491-509 15-33 (75)
450 COG3629 DnrI DNA-binding trans 42.1 91 0.002 30.7 7.1 64 481-545 152-215 (280)
451 PF04053 Coatomer_WDAD: Coatom 42.0 2.3E+02 0.0049 30.2 10.6 48 458-510 328-375 (443)
452 KOG0890 Protein kinase of the 42.0 6.5E+02 0.014 32.5 15.2 67 444-512 1666-1732(2382)
453 KOG0276 Vesicle coat complex C 41.8 2.6E+02 0.0055 30.7 10.6 18 491-508 730-747 (794)
454 KOG3807 Predicted membrane pro 41.7 3.9E+02 0.0084 27.0 12.9 35 480-514 271-307 (556)
455 COG1747 Uncharacterized N-term 41.7 4E+02 0.0086 28.7 11.7 57 460-516 217-293 (711)
456 PF07219 HemY_N: HemY protein 41.5 2E+02 0.0043 23.7 8.8 47 451-497 62-108 (108)
457 PF01535 PPR: PPR repeat; Int 40.3 40 0.00087 19.8 3.0 26 451-476 3-28 (31)
458 KOG1914 mRNA cleavage and poly 40.2 1.9E+02 0.0041 31.2 9.2 83 439-523 11-93 (656)
459 PF01239 PPTA: Protein prenylt 38.8 76 0.0016 19.3 4.0 25 468-492 3-27 (31)
460 KOG1920 IkappaB kinase complex 38.5 2.7E+02 0.006 33.0 10.9 25 404-428 957-981 (1265)
461 KOG1463 26S proteasome regulat 37.7 4.3E+02 0.0093 26.9 10.8 68 444-511 124-197 (411)
462 KOG1920 IkappaB kinase complex 37.4 4.3E+02 0.0094 31.5 12.2 42 391-433 866-907 (1265)
463 smart00101 14_3_3 14-3-3 homol 37.3 1.2E+02 0.0026 29.3 7.0 54 415-476 144-199 (244)
464 COG3014 Uncharacterized protei 36.7 2.1E+02 0.0045 29.0 8.4 125 396-523 122-254 (449)
465 KOG2561 Adaptor protein NUB1, 36.4 5.4E+02 0.012 27.1 14.6 112 395-510 159-295 (568)
466 KOG3616 Selective LIM binding 35.9 2.3E+02 0.0049 31.8 9.3 47 461-508 745-791 (1636)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 35.4 2E+02 0.0044 24.5 7.5 85 413-509 40-126 (126)
468 PF09797 NatB_MDM20: N-acetylt 35.3 1.6E+02 0.0034 30.3 8.2 47 461-507 196-242 (365)
469 cd02681 MIT_calpain7_1 MIT: do 34.4 2.2E+02 0.0047 22.0 7.4 18 492-509 16-33 (76)
470 PF13812 PPR_3: Pentatricopept 33.9 78 0.0017 19.0 3.7 26 451-476 4-29 (34)
471 KOG2581 26S proteasome regulat 33.6 4.1E+02 0.009 27.7 10.2 110 397-518 245-356 (493)
472 KOG4563 Cell cycle-regulated h 33.2 1.2E+02 0.0027 30.8 6.4 38 394-431 36-73 (400)
473 cd02684 MIT_2 MIT: domain cont 33.1 1.9E+02 0.0042 22.1 6.3 19 492-510 16-34 (75)
474 KOG1811 Predicted Zn2+-binding 33.0 1.1E+02 0.0024 33.1 6.4 53 460-515 568-620 (1141)
475 PLN00122 serine/threonine prot 33.0 3.3E+02 0.0071 24.7 8.6 70 479-548 94-164 (170)
476 TIGR00985 3a0801s04tom mitocho 32.6 1.1E+02 0.0024 27.0 5.4 41 391-431 82-123 (148)
477 PRK15490 Vi polysaccharide bio 32.3 3.4E+02 0.0073 29.9 10.1 61 455-515 15-75 (578)
478 COG5159 RPN6 26S proteasome re 32.2 4.1E+02 0.0089 26.3 9.5 71 441-511 118-194 (421)
479 TIGR00756 PPR pentatricopeptid 32.1 81 0.0018 18.8 3.5 26 451-476 3-28 (35)
480 PF02064 MAS20: MAS20 protein 31.9 1.1E+02 0.0024 25.9 5.2 36 487-522 68-103 (121)
481 COG2015 Alkyl sulfatase and re 31.8 1.3E+02 0.0028 31.9 6.4 60 484-545 454-513 (655)
482 cd00280 TRFH Telomeric Repeat 31.6 2.6E+02 0.0056 25.8 7.6 29 455-484 118-146 (200)
483 PF07219 HemY_N: HemY protein 31.2 84 0.0018 25.9 4.4 36 393-428 53-88 (108)
484 cd02677 MIT_SNX15 MIT: domain 30.8 1.9E+02 0.0041 22.2 5.8 16 495-510 19-34 (75)
485 KOG1258 mRNA processing protei 29.9 7.7E+02 0.017 27.0 14.2 42 461-502 379-420 (577)
486 PF13041 PPR_2: PPR repeat fam 29.4 1.8E+02 0.004 19.6 5.8 27 451-477 6-32 (50)
487 PF10938 YfdX: YfdX protein; 29.4 4.1E+02 0.0088 23.6 9.0 110 401-510 4-145 (155)
488 cd02679 MIT_spastin MIT: domai 29.2 1E+02 0.0022 24.0 4.1 33 463-510 4-36 (79)
489 KOG1258 mRNA processing protei 28.4 5.9E+02 0.013 27.9 10.8 63 450-512 299-361 (577)
490 KOG4056 Translocase of outer m 28.2 1.3E+02 0.0028 26.1 4.8 42 390-431 72-113 (143)
491 PF08969 USP8_dimer: USP8 dime 28.2 1.7E+02 0.0036 24.4 5.7 44 387-430 26-69 (115)
492 PF02184 HAT: HAT (Half-A-TPR) 27.8 1.1E+02 0.0023 19.3 3.2 18 497-514 2-19 (32)
493 COG2178 Predicted RNA-binding 27.7 5E+02 0.011 24.1 9.5 101 400-509 30-148 (204)
494 KOG4014 Uncharacterized conser 27.7 3.7E+02 0.0081 24.8 7.9 21 491-511 177-197 (248)
495 PF10938 YfdX: YfdX protein; 27.7 2.7E+02 0.0058 24.8 7.2 72 398-476 74-145 (155)
496 PF03745 DUF309: Domain of unk 26.9 1.5E+02 0.0033 21.7 4.5 60 403-471 3-62 (62)
497 PHA02122 hypothetical protein 26.4 1E+02 0.0022 21.9 3.2 21 54-75 39-59 (65)
498 COG5191 Uncharacterized conser 25.4 1.4E+02 0.0031 29.8 5.2 62 410-486 118-180 (435)
499 KOG2180 Late Golgi protein sor 25.3 9.9E+02 0.021 26.9 11.9 68 490-558 140-207 (793)
500 KOG4014 Uncharacterized conser 25.0 5.5E+02 0.012 23.7 9.9 30 464-495 128-157 (248)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-65 Score=496.32 Aligned_cols=357 Identities=50% Similarity=0.808 Sum_probs=334.7
Q ss_pred ccccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCC
Q 008400 162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238 (567)
Q Consensus 162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~ 238 (567)
+|+|+++|..|+.|.+||++.+.||+.|+++ +|+.|.+|.|.++.||..++.+|+. |+.+.|
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p- 66 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP- 66 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC-
Confidence 6889999999999999999999999999988 5899999999999999999999998 455543
Q ss_pred CCCCCCCCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCCC-CCCCCCCCEEEEEEEEEecCCcEEEeccCCCCccc
Q 008400 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL 317 (567)
Q Consensus 239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g-~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~ 317 (567)
+.||++++|.|+|+|. |++|+|+|+++|.| ..+|..|..|+|||.|.+.|+ +|+++.. .
T Consensus 67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-----~ 126 (397)
T KOG0543|consen 67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-----R 126 (397)
T ss_pred ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----c
Confidence 6799999999999998 89999999999999 689999999999999999988 7776543 3
Q ss_pred EEEEcCc-cchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee-ecccccCCChHHH
Q 008400 318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK 395 (567)
Q Consensus 318 ~~~~lg~-~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~-~~~~~~~~~~~e~ 395 (567)
|.|.+|+ ..+|.||++||++|++||++.|+|+|+|+||+.+.. ++.|||++++.|+|+|++|. +....|.+..+++
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~ 204 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER 204 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence 8888898 589999999999999999999999999999954433 47899999999999999999 8899999999999
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
+..|...+++||.+|+.|+|..|+..|.+|+.++.+.....+++......++..||+|+|+||+|+++|..|+..|+++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008400 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGR 555 (567)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~ 555 (567)
+++|+|+|||||+|+||+.+++|+.|+.+|++|++++|+|++++.+|..|+++.++++++++++|++||+++....+...
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~ 364 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTK 364 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987765543
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=297.49 Aligned_cols=351 Identities=36% Similarity=0.542 Sum_probs=270.3
Q ss_pred EcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCC
Q 008400 45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS 124 (567)
Q Consensus 45 ~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~ 124 (567)
++|+|+..|..||.|.+||++++.||+.||+|.+ +.|+.|.+|.+.+|.||..++..|+. |+.+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999998 79999999999999999999999998 78888
Q ss_pred CCCCCCCCcEEEEEEEEEEeeccccccccceeeeeeecccc-ccCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEecC-
Q 008400 125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD- 201 (567)
Q Consensus 125 ~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~- 201 (567)
|+.+|++.++.|+|+|+ |+.++++|+.+|.| ...|..+..|.+||.+.+.++ +|+++ ..+.|..|.
T Consensus 66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence 99999999999999997 89999999999998 999999999999999999888 66666 556788888
Q ss_pred CCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCC
Q 008400 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281 (567)
Q Consensus 202 ~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~ 281 (567)
..++.||+.+|..|++||++.|+|+|+++||+.+.. .+.|||+++|.|+|+|++|....+.+
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s-------------- 196 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES-------------- 196 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence 479999999999999999999999999999955443 57899999999999999997422211
Q ss_pred CCCCCCCCCEEEEEEEEE-ecCCcEEEeccCCCCcccEEEEcCccc-hhhHHHHHHhccCCCcEEEEEEcCCCccCCccc
Q 008400 282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (567)
Q Consensus 282 g~~~p~~~~~v~v~y~~~-l~~g~~~~~~~~~~~~~~~~~~lg~~~-vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~ 359 (567)
-..++..++....+ .+.|+.+ |.-|+.. -+.-.++|+. .+..+..+...
T Consensus 197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~----------~l~~~~~~~~e-- 247 (397)
T KOG0543|consen 197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVS----------FLEYRRSFDEE-- 247 (397)
T ss_pred ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHH----------HhhccccCCHH--
Confidence 01111111111100 1123222 2222211 1112333332 22211111000
Q ss_pred cccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHH
Q 008400 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE 439 (567)
Q Consensus 360 ~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~ 439 (567)
-.....-.....+.+.+.++.+.++|..|+...+++|.+.+.+..
T Consensus 248 ------------------------------e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----- 292 (397)
T KOG0543|consen 248 ------------------------------EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----- 292 (397)
T ss_pred ------------------------------HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-----
Confidence 000111223456778899999999999999999999998876553
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 008400 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDP 513 (567)
Q Consensus 440 ~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~P 513 (567)
+++.+|.|++.+++|+.|+.++++|++++|.|-.+...+..+.....++.+. .+.|.+.+..-+
T Consensus 293 ----------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ----------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred ----------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4899999999999999999999999999999988888888888777776655 677777776544
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=265.18 Aligned_cols=276 Identities=26% Similarity=0.364 Sum_probs=238.4
Q ss_pred cCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecC--CcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEE
Q 008400 268 DDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (567)
Q Consensus 268 ~d~~v~k~il~~G~g~-~~p~~~~~v~v~y~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~ 344 (567)
.-.++.|+||..|.|. ..-..|++|++||.+...+ ++++|+++. .++|+++++|...-.+.||.+|.+|+++|++
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 3457899999999984 3355699999999997764 578998885 7999999999999999999999999999999
Q ss_pred EEEEcCC----CccCCcccc-------cc-----------------------ccCCCCCccEEEEEEEEEeee----ccc
Q 008400 345 LLTIAPE----YAFGSAESQ-------QE-----------------------LAVVPPNSTVHYEVELVSFEK----EKE 386 (567)
Q Consensus 345 ~v~i~~~----~~yg~~~~~-------~~-----------------------~~~ip~~~~l~f~ieL~~~~~----~~~ 386 (567)
.|+|+.. |.|-+...+ +. .......++|.|.++|+.+.. ..+
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e 165 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE 165 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence 9988743 333322110 00 000123468999999998864 467
Q ss_pred ccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC---CCChHHHHHHHHHHHHHHhhHHHHHHhccC
Q 008400 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (567)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~e~~~~~~~~~~~~~~nla~~~~k~~~ 463 (567)
.|.|+.++|++....++++||.+|+.|+|.+|...|..|+-.+.+.. ...+.++.++......+++|+++|+++.++
T Consensus 166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 89999999999999999999999999999999999999998877643 234578889999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGN 542 (567)
Q Consensus 464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~-~~~~~l~~~~~~~~~~~~~e~~~~~~ 542 (567)
|.++++.|+.+|..+|.|+||||+||+|+....+..+|.++|.++|+++|.-. .+..+++.+..++.+.++.++..|++
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k 325 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK 325 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999964 68889999999999999999999999
Q ss_pred hhH
Q 008400 543 MFA 545 (567)
Q Consensus 543 ~f~ 545 (567)
||+
T Consensus 326 mfs 328 (329)
T KOG0545|consen 326 MFS 328 (329)
T ss_pred hcC
Confidence 996
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-28 Score=211.52 Aligned_cols=169 Identities=32% Similarity=0.474 Sum_probs=138.5
Q ss_pred EEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeec---cccccccceeeeeee
Q 008400 85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV---KDICKDGGIIKKILK 161 (567)
Q Consensus 85 ~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~---~~~~~d~~~~~~i~~ 161 (567)
|.+|.+.+|+|.+.++.||+.|+++++++||+++||..+.. .-..+++.+.++..... ........+...+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 35788899999999999999999999999999999965542 12345666666554332 222233444444443
Q ss_pred c-cccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008400 162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236 (567)
Q Consensus 162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~ 236 (567)
. .....+.+.||.|.+||++.+.||++||+| +|+.|++|.+++++||+++|.+|++||++++.|||++|||++|.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 3 336678889999999999999999999998 79999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCeEEEEEEeecccc
Q 008400 237 SASGNEGAVPPNATLQIALELVSWKT 262 (567)
Q Consensus 237 ~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (567)
+ +.||++++|+|+|+|+....
T Consensus 157 ~-----~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 157 P-----PKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred C-----CCCCCCeeEEEEEEEEEeec
Confidence 5 56999999999999998754
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-27 Score=206.52 Aligned_cols=176 Identities=28% Similarity=0.468 Sum_probs=143.7
Q ss_pred EEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc---ceeeeecCccee
Q 008400 197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK---TVSEITDDKKVI 273 (567)
Q Consensus 197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~---~~~d~~~d~~v~ 273 (567)
+++|.+.++++.++++.+|+.|+++++++||+++||..+. .....+++.+.++.+. ..+....+..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---------GDLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---------ccccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 3578889999999999999999999999999999995544 2334466666655432 223333344444
Q ss_pred EEEEeCC-CCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcCCC
Q 008400 274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352 (567)
Q Consensus 274 k~il~~G-~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~ 352 (567)
-.++..= .+..+...||.+.+||++.++||++||+++. +++|++|.||.++||+|||++|..|++||+..++|||++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L 149 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL 149 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence 4444332 2557788999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCccEEEEEEEEEeeeccc
Q 008400 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386 (567)
Q Consensus 353 ~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~ 386 (567)
+||+.|..+ .||++++|+|+|||..+.+...
T Consensus 150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 999999764 5999999999999999886543
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=176.64 Aligned_cols=106 Identities=58% Similarity=1.029 Sum_probs=103.3
Q ss_pred CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCc
Q 008400 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (567)
Q Consensus 38 g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ 117 (567)
|+.+.++..|+|...|+.||.|++||++.+.||+.|||+.+++.|+.|.+|.|.+|.||++++..|.+||+++++|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (567)
Q Consensus 118 ayg~~~~~~~ip~~~~l~~~vel~~~ 143 (567)
|||..+.+..||||++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999986
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=205.55 Aligned_cols=108 Identities=57% Similarity=0.977 Sum_probs=104.5
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (567)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ 112 (567)
.++++|+.|++++.|+| ..|..+|.|.+||++++.||++|||++++++|+.|.|| ++|+||.+||.+|++|++++|+
T Consensus 97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 45899999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (567)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~ 143 (567)
|||++|||..+.+..||||++|+|+|+|+++
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999987779999999999999986
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=165.72 Aligned_cols=106 Identities=38% Similarity=0.639 Sum_probs=99.3
Q ss_pred ceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcC
Q 008400 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP 350 (567)
Q Consensus 271 ~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~ 350 (567)
++-+.+|.+|+|...|..|++|++||++.|.||+.||+++ +++.||+|.+|.++||.||+.++..|.+||++.++|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence 3678899999999999999999999999999999999886 58999999999999999999999999999999999999
Q ss_pred CCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400 351 EYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (567)
Q Consensus 351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~ 381 (567)
+|+||..+. +..||||++|.|+|||+.+
T Consensus 80 d~aYG~~G~---p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGH---PGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCC---CCccCCCcEEEEEEEEEec
Confidence 999999884 3589999999999999875
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=2.8e-22 Score=186.41 Aligned_cols=108 Identities=46% Similarity=0.776 Sum_probs=103.6
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (567)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ 112 (567)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+| ++||||+++|.+|++|++++|+
T Consensus 98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 45899999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (567)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~ 143 (567)
|||++|||..+.++.|||+++|+|+|+|++|
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999988899999999999999987
No 10
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.3e-22 Score=180.86 Aligned_cols=108 Identities=49% Similarity=0.872 Sum_probs=103.0
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEE-EEccCCcchHHHHHHhcccccccEEE
Q 008400 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV 110 (567)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~-~g~~~~~t~~~~~p~~-~~lG~~~~i~gl~~~l~~m~~Ge~~~ 110 (567)
.+.++||.|..++.|+| +.+..|+.|.+||.+++. +|.+|++++.. .|+. |.+|.+.+|+||+.+|.||++|++|+
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 35899999999999999 999999999999999998 99999999874 8999 99999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (567)
Q Consensus 111 i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~ 143 (567)
|+|||++|||..+.+ .||||++|+|+|||+.+
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 999999999999986 89999999999999876
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.87 E-value=2.1e-21 Score=176.08 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=102.8
Q ss_pred eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400 33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (567)
Q Consensus 33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~ 110 (567)
..+++|++|.++.+ |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 45889999999976 666 78899999999999999999999999874 699999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (567)
Q Consensus 111 i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~ 144 (567)
|.|||++|||..+.+..||+|++|+|+|+|++|.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999985
No 12
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-20 Score=168.51 Aligned_cols=103 Identities=34% Similarity=0.585 Sum_probs=95.3
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008400 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (567)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~i 225 (567)
+..+++..+++..|+| ..|..++.|+|||++++.+|++||++ +|+.|.+| ++++||.++|.+|++|++++++|
T Consensus 98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I 174 (205)
T COG0545 98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI 174 (205)
T ss_pred ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence 3567899999999988 89999999999999999999999997 78888888 99999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008400 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (567)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (567)
||++|||+.|.+ +.||||++|+|+|+|+++
T Consensus 175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence 999999999864 459999999999999875
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=3.1e-20 Score=175.48 Aligned_cols=125 Identities=33% Similarity=0.441 Sum_probs=119.6
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
+-...|+.+|.+||.+++.++|++|+..|.+||.+.|.++.+ |+|+|++|.++|+|+.|+++|+.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence 678889999999999999999999999999999999998877 99999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
||.+||++.|+|.|+|.||+.+|+|.+|+..|++||+++|+|...+..|+.+++++++..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999998888776554
No 14
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=7.8e-20 Score=176.18 Aligned_cols=110 Identities=49% Similarity=0.876 Sum_probs=103.1
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (567)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ 112 (567)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ ++||||+++|.+|++|+++.|+
T Consensus 142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 35899999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeec
Q 008400 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (567)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~ 146 (567)
||++++||..+.+ .||++++++|+|+|+++.+.
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence 9999999999865 79999999999999999753
No 15
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=4.8e-19 Score=156.68 Aligned_cols=134 Identities=34% Similarity=0.489 Sum_probs=123.0
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
.+..+..++..||.+|+.|+|.+|...|..||.+++.... ..+..||.|+|+|.+|++.|+.||..|.+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3678999999999999999999999999999999886552 567888999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (567)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~ 538 (567)
|+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+..++..+.++...+...+++.+.
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877777655443
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=8.9e-19 Score=143.95 Aligned_cols=93 Identities=56% Similarity=0.979 Sum_probs=87.0
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCC-CCC
Q 008400 49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127 (567)
Q Consensus 49 G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~-~~~ 127 (567)
|.++|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||+++||..+. +..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 4457999999999999999999999999877799999999999999999999999999999999999999999987 457
Q ss_pred CCCCCcEEEEEEEE
Q 008400 128 IPPNATLQFDVELL 141 (567)
Q Consensus 128 ip~~~~l~~~vel~ 141 (567)
||++++++|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999985
No 17
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.75 E-value=5.4e-18 Score=150.90 Aligned_cols=133 Identities=23% Similarity=0.350 Sum_probs=97.3
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (567)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (567)
.++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.+|++|+++.|.|||++|||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d-------- 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS-------- 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 578899999999999999999999987679999999999999999999999999999999999999999877
Q ss_pred CcEEEEEEEEEEeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008400 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (567)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (567)
..++..+....+...... ..+..+......|. +...-..++.|+++|||++++.++.++-+
T Consensus 76 ~~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~ 139 (156)
T PRK15095 76 PDLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIE 139 (156)
T ss_pred hHHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEE
Confidence 344444444443211000 01111100001111 11222345799999999999998877653
No 18
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=153.91 Aligned_cols=105 Identities=30% Similarity=0.473 Sum_probs=97.6
Q ss_pred cccccceeeeeeeccccccCCCCCCeEEEEEEEEeC-CCeEeeec---cceE-EEecCCCCcchHHHHHhhccCCcEEEE
Q 008400 149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL 223 (567)
Q Consensus 149 ~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~i 223 (567)
.+..+++...-+..|.| ..+..|+.|.++|.+++. .|++|+++ .|.. |.+|.+++|+||+.++.+|++|.+++|
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 45678888999999998 999999999999999999 89999987 7888 999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008400 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (567)
Q Consensus 224 ~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (567)
+|||++|||.+|.+ .||||++|+|+|+|+..
T Consensus 195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence 99999999998874 79999999999999864
No 19
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=147.04 Aligned_cols=131 Identities=28% Similarity=0.414 Sum_probs=100.1
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (567)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (567)
+++.||.|+++|++++.||++||+|.....|+.|.+|.|++++||++||.||.+|++.+|.|||+.|||+++.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~------- 74 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP------- 74 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh-------
Confidence 4678999999999999999999999875689999999999999999999999999999999999999999873
Q ss_pred CcEEEEEEEEEEeeccccc---------cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEE
Q 008400 132 ATLQFDVELLSWTSVKDIC---------KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT 198 (567)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~---------~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~ 198 (567)
.++-.+..-.|....+.. .++....+| +.-.++.|+++|||++++.++.++-+-..+.
T Consensus 75 -~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V--------~~V~~~~V~VDfNHpLAGktL~feveVv~v~ 141 (174)
T COG1047 75 -DLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVV--------TEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR 141 (174)
T ss_pred -HHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEE--------EEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence 344334333333221110 111122233 3334579999999999999998876555443
No 20
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.71 E-value=7.8e-17 Score=146.26 Aligned_cols=104 Identities=23% Similarity=0.341 Sum_probs=91.9
Q ss_pred ccceeeeeeec--cccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008400 152 DGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (567)
Q Consensus 152 d~~~~~~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip 226 (567)
..++...++.. |+| ..|..||.|++||.+++++|++|+++ .|..|.+|.+++++||+++|.+|++||++++.||
T Consensus 68 ~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP 146 (177)
T TIGR03516 68 QNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFP 146 (177)
T ss_pred CCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEEC
Confidence 44555555554 555 68999999999999999999999987 5889999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008400 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (567)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (567)
|++|||..|.+ ..||||++|+|+|+|+++.
T Consensus 147 ~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 147 SHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred HHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence 99999998763 5799999999999999874
No 21
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.68 E-value=1.8e-16 Score=144.53 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=95.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (567)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (567)
+++++++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+|+++|.+|++|++++|.|||+.|||+++
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d-------- 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-------- 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 467899999999999999999999986 48999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEEEEEeecccc---------ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008400 132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (567)
Q Consensus 132 ~~l~~~vel~~~~~~~~~---------~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (567)
..++..|....|...... ..++.+..+|.+ ..++.|+|+|||+|++.++.++-+
T Consensus 73 ~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~e--------v~~d~V~vD~NHPLAG~~L~F~ve 135 (196)
T PRK10737 73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFNVE 135 (196)
T ss_pred hHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEE--------EcCCEEEEECCCcCCCCEEEEEEE
Confidence 344444444333211111 111222222322 345899999999999998877653
No 22
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.67 E-value=5.7e-16 Score=144.18 Aligned_cols=105 Identities=34% Similarity=0.481 Sum_probs=95.7
Q ss_pred CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEE
Q 008400 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI 348 (567)
Q Consensus 269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i 348 (567)
+.++..+|+++|.| ..|..++.|.|||.+++.||++|+++. .++.|+.|.+| .+|+||+.+|..|++|+++.|.|
T Consensus 101 ~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~--~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSV--ARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred CCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEecc--CCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 56789999999999 579999999999999999999999875 36789999996 58999999999999999999999
Q ss_pred cCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400 349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (567)
Q Consensus 349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~ 381 (567)
|++++||+.+.. ..|||+++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAG---ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence 999999998764 469999999999999876
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.3e-16 Score=156.69 Aligned_cols=117 Identities=36% Similarity=0.499 Sum_probs=111.2
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+...++.||.+|+.|+|..|+++|.+||...|.+... |+|+|+||++++++..|+.+|+.++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l---------------YsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL---------------YSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 37888999999999999999999999999998877655 999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
+|++.++|+|.|.|+..+.+|++|++.|.+++++||++.++...+++|...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999997754
No 24
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.65 E-value=1.3e-15 Score=125.01 Aligned_cols=94 Identities=39% Similarity=0.668 Sum_probs=85.3
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccc
Q 008400 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ 361 (567)
Q Consensus 282 g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~ 361 (567)
|..+|..|+.|++||.+++.+|++|+++.. ...|++|.+|.+.+++||+.+|..|+.||++.|.+++.++||+.+...
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 445799999999999999999999998753 688999999999999999999999999999999999999999987643
Q ss_pred cccCCCCCccEEEEEEEE
Q 008400 362 ELAVVPPNSTVHYEVELV 379 (567)
Q Consensus 362 ~~~~ip~~~~l~f~ieL~ 379 (567)
..||++++|.|+|+|+
T Consensus 79 --~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 --PKIPPNSTLVFEIELL 94 (94)
T ss_dssp --TTBTTTSEEEEEEEEE
T ss_pred --CCcCCCCeEEEEEEEC
Confidence 3599999999999985
No 25
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.63 E-value=1e-15 Score=145.98 Aligned_cols=122 Identities=31% Similarity=0.442 Sum_probs=114.7
Q ss_pred hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHH
Q 008400 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (567)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~ 471 (567)
.++.+..+..++++||.||++|.|++|+.+|.+++...+.+... |.|+|.+|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence 45678888899999999999999999999999999999988876 899999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
+.|+.+|....|||.||+.|...+|...+|.++++.+|+|+|++.+.+..+..+...
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL 211 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999999888888887653
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=7.3e-15 Score=146.34 Aligned_cols=127 Identities=32% Similarity=0.437 Sum_probs=107.7
Q ss_pred cCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (567)
Q Consensus 388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (567)
-.++.+++.+.|..+|.+||.+|++|+|++||++|+.||.+.+..+.+ |.|+|+||..+|+|++.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence 346788999999999999999999999999999999999999987766 99999999999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 008400 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 468 i~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~ 529 (567)
+++|.++|+++|+.+|||+|||.||..+|++++|+.+..-.--++ =+|..+...+.+..+++
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987443332 12333334444443333
No 27
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.58 E-value=1.2e-14 Score=140.40 Aligned_cols=104 Identities=34% Similarity=0.602 Sum_probs=92.4
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008400 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (567)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~i 225 (567)
..+.++.++++..|+| ..|..+|.|.|+|.+.+.||++|+++ .|..|.+ +.++|||+++|.+|++|+++.|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence 3567889999999999 68999999999999999999999986 4556655 579999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008400 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262 (567)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (567)
||+++||..|. +.|||+++|+|+|+|+++..
T Consensus 220 P~~laYG~~g~------~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 220 PPELAYGKAGV------PGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CchhhCCCCCC------CCCCCCCcEEEEEEEEEecc
Confidence 99999999875 35999999999999998753
No 28
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.6e-14 Score=136.28 Aligned_cols=113 Identities=27% Similarity=0.370 Sum_probs=101.2
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.|+.+++.||.+|+.++|..|...|+++|.....+. .+...+|+|+|+|++.+|+|..|+.+|.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998765555 357788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~ 521 (567)
+|++.||++|-|+|++.+..+.+|..+++..+.++-+++.+..+
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l 192 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL 192 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999998888776555444333
No 29
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.5e-14 Score=139.05 Aligned_cols=128 Identities=25% Similarity=0.365 Sum_probs=115.7
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
-..+.....+++||.+|++|+|..|-+.|..||.+.|.+. .....||.|+|.+..++|+..+|+.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-----------~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-----------KTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-----------chhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 3456788899999999999999999999999999988754 33677899999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
|+.+|+...|||.++|+||+.+++|++|.++|++|++++.+ .+++..++++...+++.+
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK 371 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999877 778888888877776554
No 30
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=9.7e-14 Score=142.21 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=110.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..++.+|+.+|..|+|.+|+..|.+|+++.+.+.. +|+++|.||+++|+|++|+.++++++.++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------------LYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345788999999999999999999999998776443 48999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|..++...
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998887543
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2e-13 Score=138.27 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=106.3
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+++.||..|..|+|+.|+.+|..||.+.|.+... |.|+++||.++++|.+|+++..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl---------------ySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL---------------YSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccch---------------hcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999998876544 9999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 526 (567)
|.++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+....-+....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999998888877766
No 32
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=7.4e-13 Score=117.68 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=103.7
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+...|..++..|+|.+|+..|.+++...|.+... ++++|.++.++|++++|+..|++++.++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA---------------HIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4567999999999999999999999987765543 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
+.+++++|.++..+|++++|+..|++|++++|++......++.+...+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877776655543
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=1.5e-12 Score=144.24 Aligned_cols=134 Identities=31% Similarity=0.384 Sum_probs=116.1
Q ss_pred CCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 008400 366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445 (567)
Q Consensus 366 ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~ 445 (567)
+|++..+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|.+|+..|++|+.+.+. .
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------ 160 (615)
T TIGR00990 95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------ 160 (615)
T ss_pred CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence 44555555555554433 455789999999999999999999999999999999999999988763 1
Q ss_pred HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 24899999999999999999999999999999999999999999999999999999999988877654
No 34
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=7.7e-12 Score=109.46 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=95.5
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.-+.+...|..++..|+|++|.+.|+-.+.+.+.+... ++|+|.|+..+|+|.+|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34567889999999999999999999999998877665 999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
+|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999987444
No 35
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.3e-12 Score=116.81 Aligned_cols=117 Identities=32% Similarity=0.413 Sum_probs=104.8
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+.++++.||.+|...+|..|+.+|.+||.+.|....+ |.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 358899999999999999999999999999999887766 89999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C--CCHHHHHHHHHHHHH
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID---P--DNRDVKLEYKTLKEK 528 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---P--~n~~~~~~l~~~~~~ 528 (567)
++|+.+|++|-+|.+++....|++|+..+.+|+.+. | --.++..+|..++.+
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 999999999999999999999999999999997763 1 123677777776554
No 36
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.34 E-value=2.8e-12 Score=114.27 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008400 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243 (567)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~ 243 (567)
.++.++.|++||++++.+|++|+++ +|+.|++|.+++++||+++|.+|++|+++.+.|||+.|||+.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~--------- 74 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP--------- 74 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence 3567899999999999999999986 689999999999999999999999999999999999999964
Q ss_pred CCCCCCeEEEEEEeeccc
Q 008400 244 AVPPNATLQIALELVSWK 261 (567)
Q Consensus 244 ~ip~~~~l~~~v~l~~~~ 261 (567)
+..++..+.+..|.
T Consensus 75 ----d~~~v~~vp~~~f~ 88 (156)
T PRK15095 75 ----SPDLIQYFSRRDFM 88 (156)
T ss_pred ----ChHHEEEecHHHCC
Confidence 33466666666653
No 37
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.8e-12 Score=111.24 Aligned_cols=122 Identities=25% Similarity=0.366 Sum_probs=90.2
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008400 169 PKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244 (567)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ 244 (567)
...++.|+++|+.++.||++++++ .|+.|++|.+++++||+++|.+|.+|++.++.|||+.|||..
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~---------- 72 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY---------- 72 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC----------
Confidence 457899999999999999999987 599999999999999999999999999999999999999964
Q ss_pred CCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCC-----CCCCCCCCCEEEEEEEEEecCCcEEE
Q 008400 245 VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD-----GFERPNEGAVVKVKLIGKLQDGTVFV 307 (567)
Q Consensus 245 ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~-----g~~~p~~~~~v~v~y~~~l~~g~~~~ 307 (567)
+..|+-.+.+..|.... +..+=..+..++. |...-..+..|+|.|+..|++.++.+
T Consensus 73 ---~~~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~f 133 (174)
T COG1047 73 ---DPDLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHF 133 (174)
T ss_pred ---ChHHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEE
Confidence 34456666666654311 1112222222221 22233446778888888887666554
No 38
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.32 E-value=2.4e-12 Score=129.52 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=114.9
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.|..++++++.+|+.+.|+.|+..|.+||++.+++..+ +.|+|++++|.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence 47788999999999999999999999999999988877 889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
+|...|+|+|+|.++++++++.+|..+|++...+.|+++.+++.+..|.....++.
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988776654
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=2.4e-11 Score=106.82 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=103.7
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+......|..+++.|++++|++.|++++...+.+. .++.++|.|+++++++.+|+..+++++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45578899999999999999999999998766543 348899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
|.++..++++|.+|..+|++++|+..|+++++++|++........++...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987776666665543
No 40
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.6e-12 Score=121.99 Aligned_cols=155 Identities=31% Similarity=0.451 Sum_probs=137.5
Q ss_pred ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh-HH---HHHHHHHHHHHHhhHHHHHHhccCHHH
Q 008400 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EE---KKQAKALKVACNLNNAACKLKLKDYKQ 466 (567)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-e~---~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (567)
+....+..++..++.|+..|++++|..|...|.++++++........ +. ......++..++.|++.|-++.+.+..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 34456777888999999999999999999999999999874211111 11 344667788899999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
|+..|..+++.++...+|+||++.+++.+.++++|+++++.|....|++..+...+...+++..+++.++++.+.+||+
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.24 E-value=3e-11 Score=123.77 Aligned_cols=138 Identities=16% Similarity=0.098 Sum_probs=115.5
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+..+.+.||.+-..+.|++|+.+|.+|+.+-+..... |.|+|.+|+.+|..+.||..|+++|+
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHHh
Confidence 346778899999999999999999999999887765544 88999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~ 550 (567)
++|+.+.||.++|.|+...|+..+|..+|++||.+.|...++...|+.++.....-..+ -.+|++.|.-....
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A-~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA-TRLYLKALEVFPEF 387 (966)
T ss_pred cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH-HHHHHHHHhhChhh
Confidence 99999999999999999999999999999999999999988888888887666555433 34777776644433
No 42
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.23 E-value=3.2e-11 Score=110.29 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=70.5
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (567)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i 245 (567)
...++.|+++|+.++.+|++++++ +|+.|++|.++++|+|+++|.+|++|++.+|.|||+.|||..
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~----------- 71 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY----------- 71 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----------
Confidence 356789999999999999999987 899999999999999999999999999999999999999964
Q ss_pred CCCCeEEEEEEeeccc
Q 008400 246 PPNATLQIALELVSWK 261 (567)
Q Consensus 246 p~~~~l~~~v~l~~~~ 261 (567)
+..++..|....|.
T Consensus 72 --d~~lV~~vpr~~F~ 85 (196)
T PRK10737 72 --DENLVQRVPKDVFM 85 (196)
T ss_pred --ChHHEEEecHHHCC
Confidence 34566666666663
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=3.9e-10 Score=113.03 Aligned_cols=105 Identities=20% Similarity=0.142 Sum_probs=98.0
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+..+.++|..+...|++.+|+..|++|+...|.+.. +|+++|.++..+|++++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------------AYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34667889999999999999999999999998876543 489999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
++|++..+++++|.++...|++++|+.+|+++++++|++.
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999996
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.17 E-value=7.8e-11 Score=90.48 Aligned_cols=65 Identities=31% Similarity=0.474 Sum_probs=62.9
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP 513 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P 513 (567)
..+.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|++++++|++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 458899999999999999999999999999999999999999999999 79999999999999998
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-10 Score=118.79 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=62.2
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
|..+.+.||.+...|.++.|.+.|.+|++..+.. ..+++|+|.+|..+|++++|+.+|++||+++
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 4445555555555555555555555555554432 2335566666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
|+...||.++|..|..+|+.+.|+.+|.+|+.++|...++...|..+
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 65555555555555555555555555555555555555555444444
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.14 E-value=5.9e-10 Score=104.48 Aligned_cols=111 Identities=18% Similarity=0.137 Sum_probs=97.2
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHH-HhccC--HHHHHHHHHHH
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV 474 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~-~k~~~--~~~Ai~~~~~a 474 (567)
.+..+...|..+...|+|+.|+..|.+|+++.+.+... ++++|.++ ...|+ +.+|+..++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~---------------~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL---------------YAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 35678889999999999999999999999998876544 88999984 67777 59999999999
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
++.+|+++.+++++|.++..+|+|++|+..++++++++|.+..-...++
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999999999999999999999999999999998765444443
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=2.1e-09 Score=91.85 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=96.4
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
..+...|..+++.|+|++|+..|.+++...+.... ...+++++|.++.+.++++.|+..+++++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999987664321 133478899999999999999999999999988
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (567)
Q Consensus 480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l 522 (567)
++ ..+++.+|.++..++++++|+..++++++..|++..+....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 86 67899999999999999999999999999999997655443
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.06 E-value=1.4e-09 Score=120.59 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=97.9
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHH------HHHHHHHHHHhhHHHHH
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKK------QAKALKVACNLNNAACK 458 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~------~~~~~~~~~~~nla~~~ 458 (567)
.+..+...|..++..|++++|+..|++++...|..... .++-.. ........+++++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556777888888888888888888888876543211 000000 01111244677777777
Q ss_pred HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (567)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~ 538 (567)
+.+|++++|+.+|++++.++|++..+++++|.++..+|++++|+..|++++++.|++..+...+..+....++..++ .+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-~~ 488 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-IE 488 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-HH
Confidence 77777777777777777777777777777777777777777787777777777777777777777766655544432 33
Q ss_pred HHHHhhH
Q 008400 539 FYGNMFA 545 (567)
Q Consensus 539 ~~~~~f~ 545 (567)
.|.+.+.
T Consensus 489 ~~~~Al~ 495 (615)
T TIGR00990 489 KFDTAIE 495 (615)
T ss_pred HHHHHHh
Confidence 4554443
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=1.3e-09 Score=104.85 Aligned_cols=128 Identities=23% Similarity=0.287 Sum_probs=109.6
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
.+++......+.+......++|.+++..+++.++..|..... +...+--++.||.+-+++-+||+.|++
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHHH
Confidence 345666777788888899999999999999999877653322 222345678999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
+|.++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.++++..++.
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988887665443
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=1.8e-09 Score=103.94 Aligned_cols=110 Identities=24% Similarity=0.271 Sum_probs=99.3
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.++.+.+.|+.++.+|+|..|+.+|..|++..|.+.. +++.+|..|+.+|+-..|+.++.++|++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---------------aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---------------AIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---------------HHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 4678889999999999999999999999998776443 3889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l 522 (567)
.|+..-|-..||.+++++|+++.|..+|+++|+.+|++-......
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq 146 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ 146 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 999999999999999999999999999999999999765433333
No 51
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.00 E-value=4e-10 Score=108.73 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=108.0
Q ss_pred CChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH
Q 008400 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (567)
Q Consensus 390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~ 469 (567)
-..++.++.|...+-.+...+..|+++.|+..|.+|+.+.+..... |.+++.++++++++..|++
T Consensus 105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l---------------~~kr~sv~lkl~kp~~air 169 (377)
T KOG1308|consen 105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAIL---------------YAKRASVFLKLKKPNAAIR 169 (377)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhh---------------cccccceeeeccCCchhhh
Confidence 3567889999999999999999999999999999999998876654 8999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
+|+.|++++|+..+.|-.+++++..+|++.+|..+|..|++++-+. ++...+.....
T Consensus 170 D~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE-~~~a~lKeV~p 226 (377)
T KOG1308|consen 170 DCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE-ANSATLKEVFP 226 (377)
T ss_pred hhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH-HHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999997443 33444444433
No 52
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.99 E-value=8.6e-09 Score=94.67 Aligned_cols=110 Identities=24% Similarity=0.248 Sum_probs=95.8
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
.+...+..+...|..++..|+|++|+..|++++...+.... ...++.++|.++.++|+|++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35567788899999999999999999999999987543211 234689999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 008400 474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~--------------~~~A~~~~~~al~l~P~n 515 (567)
++..+|.+..+++.+|.+|..+++ +++|++.+++++.++|+|
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999988 678888888888888887
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-08 Score=102.16 Aligned_cols=136 Identities=16% Similarity=0.136 Sum_probs=117.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+.-.|.++...++-..|+..|++|++++|.+... ++-+|++|--++.+--|+-++++|+.+.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 4455667788888888888888888888888766544 8999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~ 550 (567)
|+++..|.-+|.||.++++.++|+++|++|+.....+..+...|+++.+.+++.+++ ++.|.+........
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA-a~~yek~v~~~~~e 499 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA-AQYYEKYVEVSELE 499 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988888999999999988877754 46777777755333
No 54
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.97 E-value=2.7e-08 Score=82.81 Aligned_cols=117 Identities=20% Similarity=0.172 Sum_probs=101.2
Q ss_pred hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHH
Q 008400 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (567)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~ 471 (567)
....++....+--+|..+-..|+.+.|++.|.+||.+.|...+. |+|+|.++.-+++.++|+.++
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdDL 100 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDDL 100 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHHH
Confidence 34567778888889999999999999999999999999876655 999999999999999999999
Q ss_pred HHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 472 TKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 472 ~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
++|+++.-.. ..++..+|..|..+|+.+.|+.+|+.|.++-... ++..|-.+
T Consensus 101 n~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~l 156 (175)
T KOG4555|consen 101 NKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVEL 156 (175)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhc
Confidence 9999986433 5789999999999999999999999999997554 55555443
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.3e-09 Score=81.17 Aligned_cols=65 Identities=29% Similarity=0.309 Sum_probs=60.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
+.+|..+++.|+|++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36889999999999999999999999999999999999999999999999999999999999984
No 56
>PRK15331 chaperone protein SicA; Provisional
Probab=98.96 E-value=5.9e-09 Score=91.82 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=92.4
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
-+.....|..+|.+|+|++|...|+-...+.+.+..+ ++.+|.|+..+++|++|+..|..+..++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556788899999999999999999888776665544 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~ 518 (567)
++++...|..|.||+.+|+.+.|+.+|..|+. .|.+..+
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 99999999999999999999999999999998 4565433
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.95 E-value=8.3e-09 Score=117.83 Aligned_cols=118 Identities=5% Similarity=-0.021 Sum_probs=85.3
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+...|..+.+.|++++|+..|.+++...|.+. .+++|+|.++..+|++++|+..++++++++|+
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 344555566666666666666666666555433 34778888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
++.+++++|.++..+|++++|+..|++|++++|++..+...+..+..+....+
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 88888888888888888888888888888888888777776666655544443
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=2.4e-09 Score=111.60 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=97.9
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---------ChHHHH-HHHHH---------HHHHHhhHHHHHH
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKK-QAKAL---------KVACNLNNAACKL 459 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~-~~~~~---------~~~~~~nla~~~~ 459 (567)
-+.+...||.+--+++++.|+++|++|+.+.+..... ..++.+ ..... ...+|+-+|.+|+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 3678899999999999999999999999998854322 111211 11111 2345677788888
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 534 (567)
|+++++.|.-++++|++++|.|.-.+.-.|..+.++|+.++|+..|++|+.+||.|...+-....+...+.++.+
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 888888888888888888888877777888888888888888888888888888886665555555554544443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.2e-08 Score=102.57 Aligned_cols=139 Identities=20% Similarity=0.184 Sum_probs=113.3
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
...|..+.-+|..+|-.|++..|...|..+|.+.+..... |..+|..|+.+++-.+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence 4568889999999999999999999999999987765533 8899999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhhhcc
Q 008400 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-KKEAKFYGNMFAKMKSRA 551 (567)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~-~~e~~~~~~~f~~~~~~~ 551 (567)
.+||.|+..||.||+.++-+++|++|+++|++|+.|+|+| +...+..|-..-++.+ ..-.+.|...-.++....
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999 5555555433333222 223345555555554443
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=1.4e-08 Score=95.11 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=105.4
Q ss_pred cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
.++.++++..|.++++..|.+.. .|.++|.+|..+++++.|+..|+++++++|+++.+++.+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~---------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE---------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56678888888888887776554 389999999999999999999999999999999999999998
Q ss_pred H-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhcc
Q 008400 492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRA 551 (567)
Q Consensus 492 ~-~~l~~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~ 551 (567)
+ ...|+ +++|+..++++++++|++..+...+..+...+++..++. +.|+++.+......
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~ 178 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRV 178 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCc
Confidence 5 67787 599999999999999999999999998887777666543 57778777665544
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=2.2e-08 Score=91.98 Aligned_cols=132 Identities=23% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC----------------ChHHH---HHHHHHHHHHHhhH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------------GDEEK---KQAKALKVACNLNN 454 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------------~~e~~---~~~~~~~~~~~~nl 454 (567)
..-..+....+.|..++.+|++..|...+++||+..|+.... ..+.- ..++.-...+++|.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 344567778889999999999999999999999988764422 00000 01111223456666
Q ss_pred HHHHHhccCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
|.-.+.+|+|++|...+++|+.. -+..+..|-|+|.|.++.|+++.|.+.|+++|+++|++......+.+.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 66666666666666666666652 123356777888888888888888888888888888886655555444
No 62
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.90 E-value=6.9e-09 Score=83.45 Aligned_cols=98 Identities=35% Similarity=0.451 Sum_probs=86.2
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+...|..++..|++.+|+..|.++++..+... .++.++|.|+...+++++|+..+++++...|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 56788889999999999999999988755322 347889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
..+++.+|.++...+++++|...+.++++++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999988874
No 63
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-09 Score=112.98 Aligned_cols=141 Identities=22% Similarity=0.368 Sum_probs=113.1
Q ss_pred CCCCCCcCCCCCCCCcCccCCceee---ecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEE
Q 008400 9 AANEMDADMDLPDDAPMMKVGEEKE---IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85 (567)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~ 85 (567)
+...+|++..++..-|...+.++.. +..-.-....+..-++ . ++.||.|+|+|.++. ||..|+.... ..+.|
T Consensus 113 Pev~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l 187 (441)
T COG0544 113 PEVELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSL 187 (441)
T ss_pred eceecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEE
Confidence 3467788888888888888885441 2222333444444444 3 889999999999975 9999988855 56999
Q ss_pred EccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeeccccccccceeeee
Q 008400 86 TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI 159 (567)
Q Consensus 86 ~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i 159 (567)
.||+|++||||+.+|+||++|+.+.|.|..+..|....+ +|.+..|.|+|..+.......-+..+.+.+
T Consensus 188 ~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~ 256 (441)
T COG0544 188 ELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKL 256 (441)
T ss_pred EEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence 999999999999999999999999999999999988775 779999999999999877777677766655
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.90 E-value=2.1e-09 Score=86.00 Aligned_cols=83 Identities=29% Similarity=0.380 Sum_probs=71.8
Q ss_pred cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
+|+|+.|+..|++++...+.+. ....++++|.||+++|+|++|+..+++ +..++.+...++.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999877421 123477899999999999999999999 88899999999999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 008400 492 YIQMADLDLAEFDIKKA 508 (567)
Q Consensus 492 ~~~l~~~~~A~~~~~~a 508 (567)
++.+|+|++|++.|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999876
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-08 Score=104.80 Aligned_cols=120 Identities=23% Similarity=0.199 Sum_probs=101.0
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+++.|...|+.+.|.+|+..|+.++...+...... ..-...++|+|.+|.|++.|.+||.+++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 456788888888888888888888885544322110 022345889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
++.++--.|.+|..+|+++.|+..|.+||-++|+|..+...|+.+-..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888888876544
No 66
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=7.5e-09 Score=98.79 Aligned_cols=92 Identities=25% Similarity=0.318 Sum_probs=82.9
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
+-|.-.++.++|.+|+..|.+||+++|+|+-.|.+||.||.+||+|+.|++++++|+.+||....++.-|..+.-.+.+.
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 67888889999999999999999999999999999999999999999999999999999999988888888888877777
Q ss_pred HHHHHHHHHHhhH
Q 008400 533 NKKEAKFYGNMFA 545 (567)
Q Consensus 533 ~~~e~~~~~~~f~ 545 (567)
.++..+ |++.+.
T Consensus 166 ~~A~~a-ykKaLe 177 (304)
T KOG0553|consen 166 EEAIEA-YKKALE 177 (304)
T ss_pred HHHHHH-HHhhhc
Confidence 766655 666664
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=4.2e-08 Score=95.00 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=98.8
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+..+...|..++..|+|++|+..|++++...+.+.. ...+++++|.++.+++++++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999988775431 2334789999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 478 ~p~~~k---a~~~~a~a~~~l--------~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
.|+++. +++.+|.++..+ +++++|+..|+++++.+|++..+...+.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 998876 799999999987 8899999999999999999976554443
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.87 E-value=2e-08 Score=110.46 Aligned_cols=134 Identities=4% Similarity=-0.024 Sum_probs=116.9
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+..++..|......|.|++|.+.+..++.+.|... .+..++|.+..+++++++|+..|+++|..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------------~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------------EAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 367788899999999999999999999999988654 34889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~ 547 (567)
+|++..+++.+|.++.++|+|++|+..|++++..+|++..++..+..+.+.+.+..++. ..|++.++..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~ 218 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAI 218 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhh
Confidence 99999999999999999999999999999999999999888888888877766665443 4666665544
No 69
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=6.6e-08 Score=88.43 Aligned_cols=111 Identities=18% Similarity=0.084 Sum_probs=92.3
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
.....+..+...|..++..|+|++|+..|.+|+.+.+... ....+++|+|.++.++|++++|+..|.+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445788889999999999999999999999998754211 1234689999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCCH
Q 008400 474 VLDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR 516 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~-------~l~~~~-------~A~~~~~~al~l~P~n~ 516 (567)
++.++|.+..++.++|.++. .+|+++ +|+..+++++..+|.+.
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999888 777876 55666667778888774
No 70
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.85 E-value=9.1e-09 Score=107.95 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=86.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (567)
Q Consensus 51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~ 130 (567)
..++.||.|.++|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+. +
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 35788999999999986 8999988743 78999999999999999999999999999999999999987765 6
Q ss_pred CCcEEEEEEEEEEeeccccccccceeeee
Q 008400 131 NATLQFDVELLSWTSVKDICKDGGIIKKI 159 (567)
Q Consensus 131 ~~~l~~~vel~~~~~~~~~~~d~~~~~~i 159 (567)
|.++.|.|+|.++.......-+..+++.+
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 79999999999998765555555555543
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=98.83 E-value=3e-08 Score=108.25 Aligned_cols=107 Identities=12% Similarity=-0.054 Sum_probs=50.7
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (567)
..|..+...|++++|+..|++|+++.|.+.. +++++|.++..+|++++|+..++++++++|.++.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISAD---------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 3444444445555555555555544443221 1444555555555555555555555555555544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTL 525 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 525 (567)
+++.++.+++.+|++++|+..++++++.. |++..+...+..+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 44444444444555555555555554442 3444433444433
No 72
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=4.3e-08 Score=87.05 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=90.6
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 008400 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (567)
Q Consensus 420 ~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~ 499 (567)
..|++|++..|. .+.++|.++..+|++++|+.+|.+++.++|.+..+++++|.++..+|+++
T Consensus 14 ~~~~~al~~~p~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 14 DILKQLLSVDPE------------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHcCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 457777776553 15578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 500 ~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
+|+.+|+++++++|++..+...++.+...+++..++. ..|.+...
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~ 120 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 9999999999999999999999998877776665533 34444443
No 73
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=4.4e-08 Score=91.87 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=109.1
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+...|..++..|+|.+|+..+.+|....+.+... |+-+|.||.++|+++.|...|.+++++.|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 34459999999999999999999999999888766 889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 536 (567)
++.++.|+|..|+-.|+++.|...+..+...-+.+..+...+..+........+.+
T Consensus 167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999999999999999999998889888888888766655554433
No 74
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.81 E-value=4.7e-09 Score=80.47 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.5
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhcc
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL 477 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~ 477 (567)
|..+...|..++..|+|++|+..|++|+++.+.+. .+++|+|.||.+++ ++.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---------------EAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67789999999999999999999999999977543 35999999999999 799999999999999
Q ss_pred CC
Q 008400 478 DS 479 (567)
Q Consensus 478 ~p 479 (567)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 88
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.81 E-value=1.3e-07 Score=90.26 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=86.9
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+...|..++..|+|++|+..|.+++..... ......+.++|.|+...|++++|+..+.+++..+|.+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 344555666666666666666666643111 0112347788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
..+++.+|.++..+|++++|+..+++++++.|.+......+..+....+..
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV 219 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999888766665555555444333
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=98.81 E-value=4.2e-08 Score=107.10 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=85.2
Q ss_pred cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
.+++.+|+..+++|+.+.|.+... +..+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQA---------------LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456899999999999998765533 78899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400 492 YIQMADLDLAEFDIKKALEIDPDNRDVK 519 (567)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~ 519 (567)
|..+|++++|+..|+++++++|.+....
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999999999986543
No 77
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=5.4e-08 Score=111.26 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=87.7
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
.++.|+|.++.++|++++|+..+.+++.++|+++.+++++|.++..+|++++|+..|++|++++|++..+...+..+...
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHhhHhhh
Q 008400 529 MKEYNKKEAKFYGNMFAKMK 548 (567)
Q Consensus 529 ~~~~~~~e~~~~~~~f~~~~ 548 (567)
+++..+.. ..|++.+....
T Consensus 690 lGd~~eA~-~~l~~Al~l~P 708 (987)
T PRK09782 690 LDDMAATQ-HYARLVIDDID 708 (987)
T ss_pred CCCHHHHH-HHHHHHHhcCC
Confidence 77766544 36666665443
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.2e-07 Score=92.34 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=95.5
Q ss_pred hhhhhhhHH-HhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 401 KKKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 401 ~~~~~G~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
...+.+..+ ++.|+|++|+..|+..+...|.... ...+++.+|.+|+..|+|++|+..|.+++...|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 345555665 5679999999999999999887542 234578999999999999999999999999888
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
++ +.+++++|.++..+|++++|+..|+++++..|++..+.....++
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 75 78999999999999999999999999999999997665554444
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=3e-08 Score=76.91 Aligned_cols=70 Identities=26% Similarity=0.418 Sum_probs=64.9
Q ss_pred HHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
...|++.++|+.|+..+++++.++|+++.+++.+|.++..+|++.+|+.+|+++++++|++..+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999877665543
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.77 E-value=1.4e-07 Score=90.04 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=62.0
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
++.+++.++..+|++++|+..+.+++... +.....++++|.++...|++++|...|.++++.+|++..+...+..+..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 46777888888888888888888887643 3456777888888888888888888888888888887666666666655
Q ss_pred HHHHHH
Q 008400 528 KMKEYN 533 (567)
Q Consensus 528 ~~~~~~ 533 (567)
..++..
T Consensus 181 ~~~~~~ 186 (234)
T TIGR02521 181 LRGQYK 186 (234)
T ss_pred HcCCHH
Confidence 544443
No 81
>PRK01490 tig trigger factor; Provisional
Probab=98.77 E-value=2.3e-08 Score=105.77 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (567)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (567)
.++.||.|.++|+++. +|..|+++.. .++.|.+|.+.+++||+++|.||++|+++.|.++++..|+.... +|
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 4789999999999997 8988887743 68999999999999999999999999999999999999987665 67
Q ss_pred CcEEEEEEEEEEeeccccccccceeee
Q 008400 132 ATLQFDVELLSWTSVKDICKDGGIIKK 158 (567)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~~~ 158 (567)
.++.|.|+|.++.......-+..+++.
T Consensus 229 k~~~f~v~v~~V~~~~~pel~Defak~ 255 (435)
T PRK01490 229 KEATFKVTVKEVKEKELPELDDEFAKK 255 (435)
T ss_pred CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 999999999999875555444555543
No 82
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.6e-08 Score=97.92 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=107.7
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (567)
-.||-+--+++.+.|+..|++|+++++.... ++.-+|.=|..+++-..|+..|++|++++|.+-+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 4577777889999999999999999886443 4889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 536 (567)
|||-+|++|.-++-..-|+-+|++|+++-|++..++..|+.|..++.+-.++.
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999998887666544
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.77 E-value=1.1e-07 Score=95.46 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 008400 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (567)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~ 492 (567)
+..+.++..+.++|...+.+. ......|+++|.+|..+|++.+|+.+++++++++|+++.+|+++|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 466788888888886543222 223456999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 493 ~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999988777766655444333
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=6.2e-08 Score=101.22 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=110.4
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
+.-.++.-.|..|.++++|+.|.-+|++|+.+.|.+... .+-++..+.++|+.++|+..+++|+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 445677788888899999999999999999888876543 66789999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 534 (567)
+||.|+-.-|.+|.++..+++|++|+..|+..-++.|++..+..+++++.++++....
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 9999999999999999999999999999999999999999999999999888876654
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.5e-08 Score=94.84 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=110.6
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+.+++-+|..++-..+.+.|+.+|+++|++.|..... ...-...-....+-+.|.-.++.|+|..|.+.|..+|.+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 46778889999999999999999999999987754321 112222334445678899999999999999999999999
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHh
Q 008400 478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT--LKEKMKEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 478 ~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~--~~~~~~~~~~~e~~~~~~~f~~ 546 (567)
||+| ++.|++||.+...+|+.++|+.+++.|++|||.- ++.++.+ |...+.++.. ....|.+....
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra~c~l~le~~e~-AV~d~~~a~q~ 350 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRANCHLALEKWEE-AVEDYEKAMQL 350 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 9976 6889999999999999999999999999999988 5555555 4444444432 23345555444
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=6.4e-08 Score=84.89 Aligned_cols=97 Identities=15% Similarity=0.021 Sum_probs=84.8
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
+..++|.++++.+++.+|+..+++++..+|.++.+++++|.++..++++++|+..|+++++++|.+......++.+....
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 37799999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred HHHHHHHHHHHHHhhHhh
Q 008400 530 KEYNKKEAKFYGNMFAKM 547 (567)
Q Consensus 530 ~~~~~~e~~~~~~~f~~~ 547 (567)
++..+.. +.|+..+..-
T Consensus 99 g~~~~A~-~~~~~al~~~ 115 (135)
T TIGR02552 99 GEPESAL-KALDLAIEIC 115 (135)
T ss_pred CCHHHHH-HHHHHHHHhc
Confidence 6554433 4556555543
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.72 E-value=6.5e-07 Score=86.67 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=103.4
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+...|..+++.|+|++|++.|++++...|... ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34467788999999999999999999998877543 233447899999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHH
Q 008400 479 SRN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 479 p~~---~ka~~~~a~a~~~l~~------------------~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~ 534 (567)
|++ +.|+|.+|.++..++. ..+|+..|+..++..|++. +++..+..|+.++.+.+-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 987 5789999999866641 2578899999999999986 555666666666665554
Q ss_pred HHHHHHH
Q 008400 535 KEAKFYG 541 (567)
Q Consensus 535 ~e~~~~~ 541 (567)
.-.+.|-
T Consensus 180 ~ia~~Y~ 186 (243)
T PRK10866 180 SVAEYYT 186 (243)
T ss_pred HHHHHHH
Confidence 4444443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=2.8e-07 Score=84.86 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=108.9
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+.-+.+-|..++.+|+|++|...|++|+..-..-. ....+.|++.|.++.|+++.|..+++++|++
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-------------PSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 355677888888888888888888888886422111 1223889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS 549 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~ 549 (567)
+|+++-+...+++.++..|+|-.|...+++...--+-+.+...+.-++.+++.+.. ....|...+.++-.
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~--~a~~Y~~qL~r~fP 238 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA--AAQRYQAQLQRLFP 238 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999888877666555566666665544 45577776665433
No 89
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.71 E-value=3.5e-08 Score=75.34 Aligned_cols=67 Identities=31% Similarity=0.388 Sum_probs=61.5
Q ss_pred HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
++.|+|++|+..+++++..+|++..+++.+|.||+..|++++|...+++++..+|++..+...+.++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999988777776543
No 90
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.71 E-value=1e-07 Score=105.94 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=70.5
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHH----HHHHHHHHhccCCC
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR 480 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~----Ai~~~~~al~~~p~ 480 (567)
.|..++..|++++|+..|.+++...+.+. .+++++|.++..+|++++ |+..|+++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 45677778888888888888887655422 235556666666666653 56666666666666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
+..++..+|.++..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 6666666666666666666666666666666666655555555554444333
No 91
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.70 E-value=2.9e-07 Score=79.44 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=94.7
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+...|...++.|+|.+|++.|+......|...-. ..+.+.++.+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999988877765432 3457789999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008400 479 SRNV---KALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDVKL 520 (567)
Q Consensus 479 p~~~---ka~~~~a~a~~~l~~---------------~~~A~~~~~~al~l~P~n~~~~~ 520 (567)
|+++ -|+|.+|.+++.+.. ..+|..+|++.++.-|++.-+..
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9985 689999999999987 88999999999999999864433
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.9e-08 Score=103.43 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=91.1
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (567)
-..|..++-.|+|++|+.+|+.||...|.+... |+.+|+....-.+..+||..|++||++.|..+
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 357888889999999999999999998877654 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
.+.||+|.+++.+|-|++|.+.|-.||.+.+.
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999877
No 93
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.67 E-value=5.8e-07 Score=84.82 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=100.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+...|..++..|+|.+|+..|++.+...|.... ...+.+.+|.++++.++|..|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999998876553 23457899999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 479 SRN---VKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFY 540 (567)
Q Consensus 479 p~~---~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~~e~~~~ 540 (567)
|++ ..|+|.+|.+++.+. ...+|+..|+..++..|++. ++...+..|..++.+.+-.-.++|
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 469999999987764 24589999999999999986 555666666666655554333333
No 94
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.65 E-value=2.2e-07 Score=103.40 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=89.8
Q ss_pred hhhhhhhhHHHhcCcHHH----HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 400 GKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
..+...|..++..|++.+ |+..|++++...|.+. .++.++|.++.++|++++|+..+++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445667888899999985 7899999998877543 337788999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
.++|+++.+++.+|.+|..+|++++|+..|++++..+|++......+..+
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999988899999999999999999999999998888875444333333
No 95
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.64 E-value=6.1e-07 Score=106.52 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=102.7
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+...|..+++.|++++|+..|+++++..+...... .....+......+..++|.++++.+++++|+..|+++++++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45567888999999999999999999998876543211 11111222233445677999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 526 (567)
|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987766666553
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.63 E-value=8e-07 Score=95.88 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=88.5
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+..+||.+|.+|++++|.+.+..+|+..+..... |..+|.||-.+|+.++|+...-.|--++
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~a---------------y~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIA---------------YYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhh---------------HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6788899999999999999999999999998876544 6666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK 548 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~ 548 (567)
|++..-|.++|.....+|+++.|+-+|.+|++.+|.|....-....+.++.++.. .....|.++|...+
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK-RAMETFLQLLQLDP 272 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH-HHHHHHHHHHhhCC
Confidence 6666666666666666666666666666666666666544444444444443332 23345555555443
No 97
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=8.1e-07 Score=89.33 Aligned_cols=115 Identities=13% Similarity=-0.032 Sum_probs=94.5
Q ss_pred HhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH--HHHHHHHHHHh
Q 008400 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL 475 (567)
Q Consensus 399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~--~~Ai~~~~~al 475 (567)
...+..+|..+.+.+ ++++|+..+.+++...+.+.. ++++++.+..++++. .+++..++++|
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---------------aW~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---------------IWHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---------------HhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 445566677777666 578888888888877665443 388888888888874 78899999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
+.+|.|..||..|+.++..+++|++|++++.++++++|.|..++.....+...
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888877766443
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=8.1e-07 Score=85.97 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=100.3
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--------cCHHHHHHHH
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC 471 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--------~~~~~Ai~~~ 471 (567)
..+...|..+++.|+|++|+..|+++++..|.+... ..+++++|.|+.++ +++..|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 346778999999999999999999999988865532 12367888888876 8999999999
Q ss_pred HHHhccCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Q 008400 472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKE 531 (567)
Q Consensus 472 ~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~ 531 (567)
++++..+|++..++ +.+|.+|+..|++++|+..|+++++..|+++ .++..+..+...+++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999986432 4678899999999999999999999988753 566666666666665
Q ss_pred HHHHH
Q 008400 532 YNKKE 536 (567)
Q Consensus 532 ~~~~e 536 (567)
..+..
T Consensus 219 ~~~A~ 223 (235)
T TIGR03302 219 KDLAQ 223 (235)
T ss_pred HHHHH
Confidence 54433
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=6.2e-07 Score=78.84 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=84.3
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
..+.+|.-++..|++++|.+.++.+..+||.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++.....++.|.-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHhhHh
Q 008400 530 KEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 530 ~~~~~~e~~~~~~~f~~ 546 (567)
++..... +.|+...+.
T Consensus 117 G~~~~A~-~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAI-KALKAVVRI 132 (157)
T ss_pred CCHHHHH-HHHHHHHHH
Confidence 7666443 445544444
No 100
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=1.1e-07 Score=94.82 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=96.4
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+...|..+.+.|++++|++.|++|++..|.+.. +..+++.++...|+++++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------------ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 455678889999999999999999999999886443 26678888889999999888888888887
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~ 546 (567)
|.++..+..+|.+|..+|++++|+.+|+++++.+|+|..+...+..+....+..+++. ..+++.+..
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~ 277 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL 277 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 8888899999999999999999999999999999999999999888877766665433 344444443
No 101
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=1e-06 Score=84.00 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=99.9
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
..+.+.+..+++.|+|..|...|...++..|..... ..+++-||.|++.+|+|+.|...|..+.+-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 338889999999999999999999999998876532 34589999999999999999999999999888
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
.+ +.++|.+|.+...+++-++|...|+++++-.|+...+......+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 76 56799999999999999999999999999999997665544443
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=6.7e-07 Score=98.64 Aligned_cols=106 Identities=10% Similarity=-0.090 Sum_probs=97.2
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
..+.+......+..+++.+++++|+..+++++...|++... ++++|.|..++|+|++|+..|+++
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHH
Confidence 34456778899999999999999999999999998876654 889999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
+.-+|++++++..+|.++..+|+.++|...|++|++....-
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999986554
No 103
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.54 E-value=6.8e-07 Score=101.47 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=100.9
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+...|..+...|++.+|+..|++++...|.+... +.+++.++...+++.+|+..+++++..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY---------------QRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3447788899999999999999999999987755432 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
|++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999888777666543
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.53 E-value=1.8e-06 Score=90.21 Aligned_cols=66 Identities=23% Similarity=0.173 Sum_probs=45.5
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
.+.++|.++++++++++|+..++++++.+|++..+++.+|.+|...|++++|++.|+++++.+|.+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 355666666677777777777777777667666677777777777777777777777777666655
No 105
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.53 E-value=7.4e-07 Score=105.81 Aligned_cols=113 Identities=22% Similarity=0.248 Sum_probs=67.5
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (567)
...|..+++.|++++|+..|++++...+.+.. +++++|.++..+|++++|+..|+++++++|.+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~---------------a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSY---------------AVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 35577777777777777777777777554321 255666666666666666666666666666665
Q ss_pred HHHHHHH------------------------------------------HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400 483 KALYRRA------------------------------------------QAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (567)
Q Consensus 483 ka~~~~a------------------------------------------~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 520 (567)
.++..++ .++...|++++|+..|+++++++|++..+..
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5443332 2233456666666666666666666655555
Q ss_pred HHHHHHHHHH
Q 008400 521 EYKTLKEKMK 530 (567)
Q Consensus 521 ~l~~~~~~~~ 530 (567)
.+..+....+
T Consensus 500 ~LA~~~~~~G 509 (1157)
T PRK11447 500 RLAQDLRQAG 509 (1157)
T ss_pred HHHHHHHHcC
Confidence 5554444333
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.4e-06 Score=69.62 Aligned_cols=84 Identities=35% Similarity=0.442 Sum_probs=75.1
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
+++++|.++...+++++|+..+.++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..+...+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999987776676666555
Q ss_pred HHHH
Q 008400 530 KEYN 533 (567)
Q Consensus 530 ~~~~ 533 (567)
++..
T Consensus 82 ~~~~ 85 (100)
T cd00189 82 GKYE 85 (100)
T ss_pred HhHH
Confidence 5443
No 107
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.52 E-value=1.2e-06 Score=101.24 Aligned_cols=118 Identities=25% Similarity=0.310 Sum_probs=91.7
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+..+...|..++..|+|++|+..|.+++...+.... ++..+|.+++..+++++|+..+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999999999987765432 266778888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
.+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...+..+....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 240 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEA 240 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888766655555544333
No 108
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=1.5e-06 Score=87.45 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=102.9
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhccCCCCHHHHHH
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR 487 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (567)
+...+.+++|+..+.++|.+.|.+. +++++++.|..+++ ++++++..++++++.+|++..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 5567889999999999999887654 34889999999998 6899999999999999999999999
Q ss_pred HHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 488 ~a~a~~~l~~~--~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
|+.++..+++. ++++.+++++++++|+|..++...+.+...++..+ .+-+.+.++.+
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~-eeL~~~~~~I~ 170 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE-DELEYCHQLLE 170 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence 99999999874 78899999999999999999998888877776654 34455555544
No 109
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.50 E-value=1.8e-06 Score=90.15 Aligned_cols=101 Identities=18% Similarity=0.110 Sum_probs=62.8
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+...|..+++.|++++|+..|.++++..+... .+++.+|.+|.++|++++|+..+++++..+|.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCV---------------RASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 345667777778888888888888877654322 12455666666666666666666666665555
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 481 N-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 481 ~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
+ ..++..++.+|..+|++++|+..++++++.+|++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 4 34455556666666666666666666666666553
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.48 E-value=1.2e-06 Score=90.04 Aligned_cols=85 Identities=31% Similarity=0.356 Sum_probs=76.4
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
+...|..++..++|..|+..|+++|+++|++..+|+++|.+|+.+|++++|+.++++|++++|++..+...++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999888888877766665
Q ss_pred HHHHH
Q 008400 531 EYNKK 535 (567)
Q Consensus 531 ~~~~~ 535 (567)
+..++
T Consensus 85 ~~~eA 89 (356)
T PLN03088 85 EYQTA 89 (356)
T ss_pred CHHHH
Confidence 55543
No 111
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.48 E-value=4.8e-07 Score=92.21 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=61.1
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka---~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
...++|+|.+|+++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+.+|++|+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4458999999999999999999999999999999865 9999999999999999999999999983
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.47 E-value=2.9e-07 Score=72.30 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=58.0
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD----SR---NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~----p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+....+++|+|.+|..+|+|++|+.++++++.+. +. ...+++++|.+|..+|++++|++.+++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456789999999999999999999999999752 12 2678999999999999999999999999986
No 113
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=3.1e-07 Score=93.24 Aligned_cols=114 Identities=23% Similarity=0.112 Sum_probs=100.8
Q ss_pred HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---cCHHHHHH
Q 008400 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEK 469 (567)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~ 469 (567)
.+....++..+.+||..|..+....|+..|.+++...+. .+.+|.|+|.+++|. ++.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHHH
Confidence 566788999999999999999999999999999987654 345599999999996 48889999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (567)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~ 521 (567)
+|..||+++|...||+|+++.|+..++.+.+|+.+...+....|.+.+....
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 9999999999999999999999999999999999999888888877544433
No 114
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.46 E-value=3.4e-06 Score=88.97 Aligned_cols=149 Identities=22% Similarity=0.221 Sum_probs=117.9
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
+..+..++..|..|...++|.+|+..|++|+.+........ +......+.|||..|.+.|+|.+|..+|++|+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 34455666899999999999999999999999877544322 24566779999999999999999999999998
Q ss_pred ccCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 476 DLDS--------RNVKALYRRAQAYIQMADLDLAEFDIKKALEID-----PDN---RDVKLEYKTLKEKMKEYNKKEAKF 539 (567)
Q Consensus 476 ~~~p--------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~n---~~~~~~l~~~~~~~~~~~~~e~~~ 539 (567)
++-. .-...+.+.+.++..++++++|...|.+++++- ++| ..++..|+.+....+++++++ .+
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~ 389 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL 389 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 7632 225678899999999999999999999999873 334 346677777888888777655 58
Q ss_pred HHHhhHhhhhccc
Q 008400 540 YGNMFAKMKSRAQ 552 (567)
Q Consensus 540 ~~~~f~~~~~~~~ 552 (567)
|++...++.....
T Consensus 390 ~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 390 YKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHhccc
Confidence 8888877654444
No 115
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.46 E-value=2.1e-06 Score=99.05 Aligned_cols=114 Identities=19% Similarity=0.164 Sum_probs=78.5
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+...|..++..|+|++|+..|.+++...+... .+.+++.++.++|++++|+..+++++..+|+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ----------------NAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345678888899999999999999988755431 2455666677777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
+..+++.+|.+|..+|++++|+..|+++++.+|++..+...+..+....+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777766655555555444433
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.44 E-value=2.4e-06 Score=72.69 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=79.3
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK 523 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n---~~~~~~l~ 523 (567)
.++++|..+.+.+++++|+..|.+++..+|++ ..+++.+|.++...++++.|+..|++++..+|++ ..+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 47899999999999999999999999999876 6899999999999999999999999999999986 34555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400 524 TLKEKMKEYNKKEAKFYGNMFAKMKS 549 (567)
Q Consensus 524 ~~~~~~~~~~~~e~~~~~~~f~~~~~ 549 (567)
.+....++..+ ..+.|..+......
T Consensus 84 ~~~~~~~~~~~-A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEK-AKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHH-HHHHHHHHHHHCcC
Confidence 66554444333 33566666665443
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.44 E-value=2.3e-06 Score=78.23 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=87.8
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN--- 481 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~--- 481 (567)
+.+.+|-.+.|..+...+...++... ......+++++|.++..+++|++|+..+.+++.+.|++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 34566666777777777754443211 12356678999999999999999999999999887663
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
+.+++++|.+|..+|++++|+..|++|++++|.+......+..+..
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999877766666655
No 118
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=4.6e-07 Score=90.33 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=102.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+.++||..|..|+|+.|.+.|+.||.-... ...+++|++..+-++|+.++|+.++-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---------------c~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDAS---------------CTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchH---------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999965332 34458899999999999999999998876666
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
-+|+..++.+|.+|..+.+...|+++|-++-.+-|+++.+...|..+..+.....
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 6889999999999999999999999999999999999999888888766544433
No 119
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.43 E-value=2.5e-07 Score=69.88 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=56.1
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (567)
..|..+++.|+|++|+..|+++++..|.+. .+++.+|.|+..+|++++|+..++++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999998876533 4589999999999999999999999999999875
No 120
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=80.02 Aligned_cols=110 Identities=20% Similarity=0.120 Sum_probs=98.8
Q ss_pred CCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHH
Q 008400 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (567)
Q Consensus 389 ~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai 468 (567)
.++.++ +|.-+.++|+.+=.-|-+.-|...|.+++.+.|..+. +++.+|.-+...++|+.|.
T Consensus 58 ~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------------vfNyLG~Yl~~a~~fdaa~ 119 (297)
T COG4785 58 ALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------------VFNYLGIYLTQAGNFDAAY 119 (297)
T ss_pred cCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------------HHHHHHHHHHhcccchHHH
Confidence 445544 4777889998888889999999999999998876554 3888999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
+.++.++++||.+.-|..|||.+++.-|+|.-|..++.+-.+-||+++
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999999999999999999986
No 121
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.41 E-value=1.1e-06 Score=93.42 Aligned_cols=103 Identities=23% Similarity=0.195 Sum_probs=81.3
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH--HHHHHhc
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD 476 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~--~~~~al~ 476 (567)
+..+..+|..+..+|++.+|...|..|+.+.|.+... ...+|.|+++.|+..-|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 4556777777788888888888888888887766543 5678888888887777777 7888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
+||.|++|||.+|.++..+|+.+.|.++|..|+++++.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8888888888888888888888888888888888887764
No 122
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.38 E-value=3e-06 Score=96.21 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=96.1
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.....|..+...|++++|+..|++++...|.+. .+++++|.++..+|++++|+..+++++.++|+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 345678888899999999999999999877654 24889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~ 521 (567)
+..+++.+|.+++.++++++|+..++++++..|+|..+...
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999999999765443
No 123
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.37 E-value=5.1e-06 Score=90.46 Aligned_cols=118 Identities=24% Similarity=0.248 Sum_probs=102.7
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
..+.-.++-+|-.|+|..+...+..|+.... ........++++|.||..+|+|++|..+|.+++..++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 3445567778888999999988888886532 2234555689999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 480 RN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 480 ~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
++ .-+++.+|+.|+..|+++.|+.+|+++++..|+|.+....|+.+....
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 98 899999999999999999999999999999999999999999887766
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=5.4e-06 Score=84.30 Aligned_cols=131 Identities=15% Similarity=0.030 Sum_probs=109.2
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
......++...|..|+++.|...+...+...|.+..+ ..-++.++++.++..+|++.+++++.++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3445667778888899999998888877776655533 5567889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f 544 (567)
|+..-..+++|.+|++.|++.+|+..++..+.-+|+|...+..|.+....+++..+.....-..+|
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887766655544444443
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.36 E-value=2.2e-06 Score=78.68 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=73.2
Q ss_pred HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (567)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l 522 (567)
....+++++|.++...|++++|+.+|++++...|+. ..+++++|.+|..+|++++|+..|+++++++|++......+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345568999999999999999999999999887653 57999999999999999999999999999999998777766
Q ss_pred HHHHHHH
Q 008400 523 KTLKEKM 529 (567)
Q Consensus 523 ~~~~~~~ 529 (567)
..+...+
T Consensus 113 g~~~~~~ 119 (172)
T PRK02603 113 AVIYHKR 119 (172)
T ss_pred HHHHHHc
Confidence 6665444
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.35 E-value=6.4e-07 Score=68.22 Aligned_cols=67 Identities=33% Similarity=0.383 Sum_probs=58.3
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (567)
+++.|+|++|++.|++++...|.+.. +++++|.||+++|++++|...+++++..+|+++.++.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999886543 378999999999999999999999999999988877766
Q ss_pred HH
Q 008400 489 AQ 490 (567)
Q Consensus 489 a~ 490 (567)
|+
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 127
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=2.2e-06 Score=67.25 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=61.3
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+..+.+.|..++..|+|++|+..|++|+.+...... .......++.|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778899999999999999999999999998443322 1234577899999999999999999999999987
Q ss_pred c
Q 008400 477 L 477 (567)
Q Consensus 477 ~ 477 (567)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 5
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.1e-06 Score=79.66 Aligned_cols=115 Identities=19% Similarity=0.144 Sum_probs=96.7
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---cCHHHHHHHHHHH
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKV 474 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~~~~~a 474 (567)
.++.+.-.|..++..|++..|...|.+|+++.+.+... +.-+|.+++.. ..-.++...++++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 35677889999999999999999999999998876643 44555554443 3577899999999
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
|.+||+|+.+++.+|..++..|+|.+|...++..+++.|.+..-+..+.+...
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766666655433
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=6.8e-06 Score=73.06 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=43.4
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (567)
...|..++..|+|++|+..|+.++...+. ..+...+.+++|.+++.+++|++|+..++.+ .-.+-.+
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~ 118 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKA 118 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHH
Confidence 34445555555555555555555543210 0122333445555555555555555555332 1122233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKA 508 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (567)
.++..+|.+|...|++++|+..|++|
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44445555555555555555555544
No 130
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.30 E-value=4.5e-06 Score=74.43 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc----------cCHHHHHHHHHHHhccCCCCHHH
Q 008400 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA 484 (567)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~----------~~~~~Ai~~~~~al~~~p~~~ka 484 (567)
|+.|.+.|+.+....|.+... ++|-|.+++.+ ..+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 567777777777766654321 44444444443 45788999999999999999999
Q ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 485 ~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
++.+|.||..++. |++|..+|++|..++|+|...+..|....+.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 9999999998865 7899999999999999999888888776543
No 131
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.28 E-value=8.8e-06 Score=91.57 Aligned_cols=151 Identities=13% Similarity=0.024 Sum_probs=108.6
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-----------C--hHHHHHHHHH------HHHHHhhHHHHHH
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----------G--DEEKKQAKAL------KVACNLNNAACKL 459 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~--~e~~~~~~~~------~~~~~~nla~~~~ 459 (567)
+.....++...+++|+|..|+..|.++++..|..... . ++-....+.. ....+..+|.+|.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4567888899999999999999999999988875311 0 0111111111 1223344477888
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~ 539 (567)
.+|+|++|+..|+++++.+|+++.+++-++.+|...+++++|+..++++...+|.+... ..+..+.....+.. +....
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHH
Confidence 99999999999999999999999999988999999999999999999999999997654 33344433322222 36678
Q ss_pred HHHhhHhhhhcc
Q 008400 540 YGNMFAKMKSRA 551 (567)
Q Consensus 540 ~~~~f~~~~~~~ 551 (567)
|++++...+...
T Consensus 192 ~ekll~~~P~n~ 203 (822)
T PRK14574 192 SSEAVRLAPTSE 203 (822)
T ss_pred HHHHHHhCCCCH
Confidence 888887754433
No 132
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=2.5e-06 Score=82.08 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=84.6
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
..+++|+|.|++-.++++-++..+.+|+..-. .-...|||+|.+....|++.-|..+|+-||..||++.++...|..
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 34699999999999999999999999988643 236889999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008400 525 LKEKMKEYNKKEAKFYGNMFAKMKSRAQG 553 (567)
Q Consensus 525 ~~~~~~~~~~~e~~~~~~~f~~~~~~~~~ 553 (567)
++.+...... .+..+...-+.+..+.+.
T Consensus 438 L~~r~G~i~~-Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 438 LAARSGDILG-ARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHhhcCchHH-HHHHHHHhhhhCcccccc
Confidence 8776655543 334555444444444443
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.26 E-value=4.4e-06 Score=64.55 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=62.7
Q ss_pred hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (567)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (567)
.+.++.+++|+.|++.+++++.+.|.+... +.++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 357889999999999999999998876655 88999999999999999999999999999998887
Q ss_pred HHHHH
Q 008400 486 YRRAQ 490 (567)
Q Consensus 486 ~~~a~ 490 (567)
..++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 66554
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=3.1e-06 Score=89.53 Aligned_cols=131 Identities=17% Similarity=0.257 Sum_probs=107.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+.+.+..|+-.+.+++|.+|.+++++++++.+-. ...|++++.|++++++++.|.++|.+++.++
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 3344555666677799999999999999886643 3449999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
|+|..+|.|++.+|+.+++-.+|...++.|++.+-+|..++..+-.+........+ ..+.|.++..
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed-a~~A~~rll~ 615 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED-AIKAYHRLLD 615 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999998887777777666665555543 2345555554
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.25 E-value=8.3e-06 Score=76.79 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=77.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (567)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 531 (567)
.-++..++..|+|..|+..+.++..++|+++++|.-+|.+|.++|++++|...|.+|+++.|+++.+...+....-...+
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 34888899999999999999999999999999999999999999999999999999999999999998888877666655
Q ss_pred HHHHHH
Q 008400 532 YNKKEA 537 (567)
Q Consensus 532 ~~~~e~ 537 (567)
.+..++
T Consensus 184 ~~~A~~ 189 (257)
T COG5010 184 LEDAET 189 (257)
T ss_pred HHHHHH
Confidence 554443
No 136
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.2e-05 Score=83.29 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=77.8
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
..++.-||..|...++|++|+++++.||..+|++...|.|+|..+..-.+..+|+..|++||+|.|..-.++..++..--
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 34677889999999999999999999999999999999999999999999999999999999999999777777776666
Q ss_pred HHHHHHHH
Q 008400 528 KMKEYNKK 535 (567)
Q Consensus 528 ~~~~~~~~ 535 (567)
.++.++++
T Consensus 510 NlG~ykEA 517 (579)
T KOG1125|consen 510 NLGAYKEA 517 (579)
T ss_pred hhhhHHHH
Confidence 66666543
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.2e-05 Score=87.71 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=113.4
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
+-+.+.|..+|..|++..|..+|.+|+..+...... ++. +...++.-+|+|.|.-.++++..|...|..++...|
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 457788999999999999999999999874321111 111 234466789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~ 546 (567)
....+|.|+|......++..+|..+++.++.++..|++++.+++.+.....+.... ++.|..++++
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a-~k~f~~i~~~ 593 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA-KKKFETILKK 593 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc-ccHHHHHHhh
Confidence 99999999997777889999999999999999999999999999886665544432 2334444443
No 138
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.19 E-value=4.7e-06 Score=87.52 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (567)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i 245 (567)
.+..||.|+++|.+.. +|+.++++ .+..|.+|.+.+++||+++|.||+.|+++++.+|....|+..+
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~---------- 214 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE---------- 214 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----------
Confidence 4678999999999977 88888865 7889999999999999999999999999999998555676443
Q ss_pred CCCCeEEEEEEeecccc
Q 008400 246 PPNATLQIALELVSWKT 262 (567)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (567)
.++.++.|.|++.++..
T Consensus 215 ~~gk~~~f~v~i~~I~~ 231 (408)
T TIGR00115 215 LAGKEATFKVTVKEVKE 231 (408)
T ss_pred CCCCeEEEEEEEEEecc
Confidence 36889999999998754
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.17 E-value=1.5e-05 Score=79.44 Aligned_cols=141 Identities=22% Similarity=0.294 Sum_probs=101.4
Q ss_pred HHHhhhhhhhhHHHhc-CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
..|..+.+.|..+... +++++|+..|++|+.+...... ......++.++|.++.++++|++|+..|+++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3467778888888888 8999999999999999775442 24456778899999999999999999999997
Q ss_pred ccCCC------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400 476 DLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (567)
Q Consensus 476 ~~~p~------~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~ 547 (567)
...-+ +++ .+++.+.|++..|++..|...|++....+|.-.. ..+...+...+...+..+...|.......
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 64321 233 4678889999999999999999999999996532 23333445555556555555555544433
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=8.5e-05 Score=69.61 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=92.8
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHHH------HHHHHhhHHHHHHhccCH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKAL------KVACNLNNAACKLKLKDY 464 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~~------~~~~~~nla~~~~k~~~~ 464 (567)
-.|..+-..|+|++|++.|.+.+.-.|.+... +-+-...+..+ -..++..+|..|+.+++|
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 34555666889999999999988776654422 11222222222 244788999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 465 ~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
.+|.-++++++-+.|.|+-.+.|+|..++.+| ++.-|++.|.+|++++|.|..+...+-.|
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 99999999999999999999999999998887 57789999999999999775444433333
No 141
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.13 E-value=4.5e-05 Score=64.84 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=83.4
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+.+.|..+-..|+.++|+..|++|+...... ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45678888889999999999999999752211 234456889999999999999999999999998787
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 481 ---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+......++.++..+|++++|+.++-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988875
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=6.5e-05 Score=76.64 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=94.5
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (567)
..+..+++.++..+|++.+++++...|.... +..|+|.++++.|++.+|+..+++.+.-+|+++.
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPL---------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 4677889999999999999999999887543 3789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
.|..+|++|..+|+-.+|...+-..+.+.-+-..+...+.+++++
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999998888888888888876665555555555444
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=4.2e-05 Score=85.46 Aligned_cols=128 Identities=15% Similarity=0.103 Sum_probs=79.8
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc--
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-- 477 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-- 477 (567)
..+......+...+++++|++....++...|....+ |+.+|..+++.+++..|... .++..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 344455566778899999999999998887765544 44444444444443333332 22222
Q ss_pred -----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 478 -----------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540 (567)
Q Consensus 478 -----------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~ 540 (567)
.+.+-.|++.+|.||-.+|++++|.+.|+++|+++|+|..+...++...... ..++...++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~ 172 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYL 172 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 2334467777777777777777777777777777777777776666654444 333444455
Q ss_pred HHhhHh
Q 008400 541 GNMFAK 546 (567)
Q Consensus 541 ~~~f~~ 546 (567)
++.+..
T Consensus 173 ~KAV~~ 178 (906)
T PRK14720 173 KKAIYR 178 (906)
T ss_pred HHHHHH
Confidence 555544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=4.8e-06 Score=66.39 Aligned_cols=76 Identities=30% Similarity=0.410 Sum_probs=65.4
Q ss_pred ccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~ 537 (567)
+++|+.|+..++++++.+|. +...++++|.||+.+|+|++|+..+++ ++.+|.+..+.-.+++|.-.+++.+++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 467888999999999999999999999 89999998888888888888877776543
No 145
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.10 E-value=4.6e-05 Score=80.52 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=102.6
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL- 477 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~- 477 (567)
.......|..++.+|+|+.|+..|++|++.+...... ..........++|..|..+++|.+|+..|++||.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444558999999999999999999999986543321 12233444557999999999999999999999875
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 008400 478 -------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-----PDNRDVKLEYKTLKEK---MKEYNKKEAKFYGN 542 (567)
Q Consensus 478 -------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~n~~~~~~l~~~~~~---~~~~~~~e~~~~~~ 542 (567)
+|.-..++.++|.+|...|+|++|..++++|+++- ....++...+..+... ..+.++ ....|++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee-a~~l~q~ 350 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE-AKKLLQK 350 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH-HHHHHHH
Confidence 34446789999999999999999999999999874 3344555555544332 233322 2345555
Q ss_pred hhHhhh
Q 008400 543 MFAKMK 548 (567)
Q Consensus 543 ~f~~~~ 548 (567)
.++...
T Consensus 351 al~i~~ 356 (508)
T KOG1840|consen 351 ALKIYL 356 (508)
T ss_pred HHHHHH
Confidence 555444
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.06 E-value=4.5e-05 Score=85.99 Aligned_cols=111 Identities=8% Similarity=-0.021 Sum_probs=89.8
Q ss_pred hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (567)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (567)
|..+...|+|++|+..|+++++..|.+... +.-++..|...+++++|+..+++++..+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 445556799999999999999998876432 5577899999999999999999999999986554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 486 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
..++.++..++++.+|+..|+++++++|+|.++...+-.+....+..
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 44566666678887799999999999999988877777665555443
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.06 E-value=6.6e-06 Score=53.07 Aligned_cols=34 Identities=41% Similarity=0.614 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
+++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3677888888888888888888888888888764
No 148
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.05 E-value=7.3e-05 Score=76.99 Aligned_cols=116 Identities=11% Similarity=-0.010 Sum_probs=91.9
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------Ch--HH-HHHH------HHHHHHHHhhHHHHH
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EE-KKQA------KALKVACNLNNAACK 458 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--e~-~~~~------~~~~~~~~~nla~~~ 458 (567)
...-+|..++..|++.+|+..+.+++...|.+... .. .. .... ......++.++|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 34467888999999999999999999887654310 00 00 0000 011233556889999
Q ss_pred HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
..+|++++|+..++++++++|+++.++..+|.+|+..|++++|+..+++++...|.+.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 9999999999999999999999999999999999999999999999999999987543
No 149
>PRK01490 tig trigger factor; Provisional
Probab=98.05 E-value=1.4e-05 Score=84.71 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (567)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i 245 (567)
.+..||.|+++|.+.. +|+.++.. .+..|.+|.+.+++||+++|.||+.|+++.|.++....|+...
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~---------- 225 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED---------- 225 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----------
Confidence 4689999999999998 78888765 7889999999999999999999999999999986444665432
Q ss_pred CCCCeEEEEEEeecccc
Q 008400 246 PPNATLQIALELVSWKT 262 (567)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (567)
-++.++.|.|.+.++..
T Consensus 226 lagk~~~f~v~v~~V~~ 242 (435)
T PRK01490 226 LAGKEATFKVTVKEVKE 242 (435)
T ss_pred CCCCeEEEEEEEEEecc
Confidence 26788999999998754
No 150
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.04 E-value=0.00016 Score=64.17 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=88.5
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-------CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
.+...|......++...++..+.+++.+..... .+........+.....+...++.++...|+++.|+..|.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344556677778899999999999999865432 2223456677788888999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
++..+|.+..++..+-.+|..+|+..+|+..|+++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=4.2e-05 Score=74.67 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred HHHhhHHHHH-HhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008400 449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE 521 (567)
Q Consensus 449 ~~~~nla~~~-~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~ 521 (567)
...++.|.++ ++.++|++|+..|+..+...|++ +.++|++|.+|+..|+|++|+..|+++++..|++. ++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3467788876 66899999999999999999988 58999999999999999999999999999999864 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008400 522 YKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ 552 (567)
Q Consensus 522 l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~ 552 (567)
+..+...+++ ..+..+.|+++.........
T Consensus 223 lg~~~~~~g~-~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGD-TAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHCcCCHH
Confidence 4555544433 33455677777776665544
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.02 E-value=0.00012 Score=76.99 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=81.8
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
+.+.+.....+|-..+..|+|..|.+...++.+..+... ..+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~---------------~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV---------------LNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556788888999999999999999999999887654321 11344556666666666666666666
Q ss_pred hccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 475 l~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
.+..|++. .+...++..++..|+++.|+..+++.++..|+|..+...+..+....++..
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 66666553 333445666666666666666666666666666666555555554444443
No 153
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.01 E-value=1.2e-05 Score=80.08 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=95.4
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
..+......++..+++.++...+.++....... ....++..+|.++.+.|++++|+..++++|+++|
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P 177 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAP-------------DSARFWLALAEIYEQLGDPDKALRDYRKALELDP 177 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 334445566778899999999998877432211 1234578899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
++..++..++.++...|++++|...++...+..|.|......+..+...+++.++ ....|.+...
T Consensus 178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~-Al~~~~~~~~ 242 (280)
T PF13429_consen 178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE-ALEYLEKALK 242 (280)
T ss_dssp T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc-cccccccccc
Confidence 9999999999999999999999999999998888888788888888777766553 3345555544
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=7e-05 Score=80.38 Aligned_cols=118 Identities=17% Similarity=0.051 Sum_probs=88.3
Q ss_pred HhhhhhhhhHHHhcC---cHHHHHHHHHHHHHhhhccCCC--------------C---hHHHHHHHHH------------
Q 008400 399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------ 446 (567)
Q Consensus 399 a~~~~~~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~--------------~---~e~~~~~~~~------------ 446 (567)
|-.+.-+|..++.++ .+..|+.+|++|++..|..... . +.........
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 334455555555543 4889999999999987764211 1 1111111111
Q ss_pred HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
...+|.-+|..+...|++++|...+++|+.++| +..+|..+|+++...|++++|++.|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 114566788888899999999999999999999 5789999999999999999999999999999999763
No 155
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.00 E-value=0.00014 Score=76.31 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=91.4
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
-+.+.+.....+|-..+..|+|+.|.+...++-+..+. . ...+...|....++|+++.|..++.+
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p--------------~l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P--------------VVNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h--------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35567888889999999999999999777665543211 0 11133445555888888888888888
Q ss_pred HhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 474 al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
+.+.+|++. -.....+..++..|++++|+..++++++.+|+|..+...+..+....++..
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 888888874 344455888888888888888888888888888887777777766555444
No 156
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.00013 Score=70.68 Aligned_cols=143 Identities=19% Similarity=0.146 Sum_probs=106.2
Q ss_pred cCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc----------cCCCChHHHHH--------------H
Q 008400 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY----------DTSFGDEEKKQ--------------A 443 (567)
Q Consensus 388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~----------~~~~~~e~~~~--------------~ 443 (567)
.+++.+++ ...+.+.|..|+..|-|+.|...|....+.-.. ....+.+..+. .
T Consensus 99 pdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 99 PDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred CCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 34555554 455678889999999999999888765542111 00011111111 1
Q ss_pred HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 008400 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEY 522 (567)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~-~~~~~l 522 (567)
.-.....|+.+|..+....+.+.|+....+|++.||+++.|-..+|.+++..|+|..|++.++.+++.||+.. ++...|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1234567888999998999999999999999999999999999999999999999999999999999999863 566666
Q ss_pred HHHHHHHHHHH
Q 008400 523 KTLKEKMKEYN 533 (567)
Q Consensus 523 ~~~~~~~~~~~ 533 (567)
..|...+.+-.
T Consensus 256 ~~~Y~~lg~~~ 266 (389)
T COG2956 256 YECYAQLGKPA 266 (389)
T ss_pred HHHHHHhCCHH
Confidence 66666665444
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.98 E-value=8.3e-05 Score=76.16 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
...+.+..+.+.|..|++.|+|++|+..|++||.+.|++... ..+|+|+|.||.++|++++|+.++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345568889999999999999999999999999998865421 13489999999999999999999999
Q ss_pred Hhcc
Q 008400 474 VLDL 477 (567)
Q Consensus 474 al~~ 477 (567)
|+++
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 9997
No 158
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.98 E-value=8.8e-05 Score=78.05 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=106.2
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
........|..+...|++++|.+..+++++..+++.... . ..-+....+..++...+++.++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----------~--~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----------L--PLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----------h--HHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 345566778889999999999999999999877654220 0 112333445568889999999999999
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400 478 DSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS 549 (567)
Q Consensus 478 ~p~~~--ka~~~~a~a~~~l~~~~~A~~~~~--~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~ 549 (567)
+|+++ ..+..+|..++.+|+|++|.+.|+ ++++.+|++.... .+..+...+++.++ .++.|++.+..+..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSLGLMLA 402 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHHHHHhc
Confidence 99999 888899999999999999999999 6888999886644 77877777766544 46677776665443
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00038 Score=61.82 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=96.5
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
+...+..........+..+++..+...+...+...+... ....+.+.+|.+++..|++++|+..++.+
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445566677777777788899888888888777655432 33455788999999999999999999999
Q ss_pred hccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 475 LDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (567)
Q Consensus 475 l~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~ 541 (567)
+...|+. ..+.+++|.+++.+|+|++|+..++.. .-.+-...+...++.+....++..+. ++.|+
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A-~~~y~ 142 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEA-RAAYQ 142 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHH-HHHHH
Confidence 9987654 568999999999999999999999763 22222334555566665555544432 33444
No 160
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.95 E-value=7.2e-06 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008400 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503 (567)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~ 503 (567)
.|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 161
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.94 E-value=2.7e-05 Score=83.64 Aligned_cols=126 Identities=32% Similarity=0.467 Sum_probs=108.7
Q ss_pred ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--cCHHHHH
Q 008400 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAE 468 (567)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--~~~~~Ai 468 (567)
+.+.-+.++..++++||.+|..++|..|.-.|..++.+++.+.. ....+..|++.||+.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhhc
Confidence 55677889999999999999999999999999999999885442 2455688999988875 5999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
..|.-|+...|...+++++++.+|..++.++-|.+++.-....+|++.++...+.+++.
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999655554444433
No 162
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.93 E-value=0.00024 Score=77.25 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=93.2
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
...+...|..+-++|+..+|+..+..|..+.+.+... |..+|....+++++.+|+-+|.+||.++
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~---------------W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL---------------WKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH---------------HHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 4667888999999999999999999999998877644 7778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 513 (567)
|.+.+.+++++..|.++|++..|...|.+.+.++|
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999
No 163
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.93 E-value=7.1e-05 Score=78.50 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=84.1
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.++.+.-.+|..++|...++..+..|...+..... +.-.|.....+|+-++|..++..+++.|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 45667777888888888888888888755544322 334455666677777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
+.-+|.-+|..+..-.+|++|++||+.||+++|+|..+..-+..++..+++.
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 7777777777777777777777777777777777777776666665555444
No 164
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.7e-05 Score=78.06 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=93.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC------------ChHHHHH-------HHHHHHHHHhhHHHHHH
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEEKKQ-------AKALKVACNLNNAACKL 459 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~e~~~~-------~~~~~~~~~~nla~~~~ 459 (567)
+..+..-|..+-..++.++|+.+|..|-++.+..... +.+-.++ +.+.-.-++..+|.+.+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 4455566666666666666666666666655432211 0000000 00001123678899999
Q ss_pred hccCHHHHHHHHHHHhccCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDS-------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p-------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
+.+.|.+|+.++..+|..-+ .+.-.+.++|.++.+++.|++|+..|++||.+.|.+.....-++.+...++..
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 99999999999999984221 23345889999999999999999999999999999999888888877766554
Q ss_pred H
Q 008400 533 N 533 (567)
Q Consensus 533 ~ 533 (567)
.
T Consensus 506 d 506 (611)
T KOG1173|consen 506 D 506 (611)
T ss_pred H
Confidence 4
No 165
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.93 E-value=2.2e-05 Score=76.24 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=59.9
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
..|.-|+|+|.|++||.+|.+++.++|.|+-.+.+||.||+++..|..|..+|+.|+.|+-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 578899999999999999999999999999999999999999999999999999999997555
No 166
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.92 E-value=0.00062 Score=64.58 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=101.1
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+..+.+.|...++.|+|.+|++.|+......|..... -.+.+.++.+++|.++|+.|+.+.++=+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999988776654422 2346788999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHH
Q 008400 479 SRNV---KALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAK 538 (567)
Q Consensus 479 p~~~---ka~~~~a~a~~~l~~--------~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~~e~~ 538 (567)
|+++ -++|.+|.++...=+ -.+|...|+..+.--|++. ++...+..++.++...+-.=.+
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9874 578889998776532 3588899999999999985 6666666666666555543333
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=2.4e-05 Score=50.28 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
+++++.+|.+|..+|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888875
No 168
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.91 E-value=6.2e-05 Score=77.52 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=85.0
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
.+...|..+...|++.+|+..|++++...+.+.. ++.++|.+++..|++++|+..+++++...|.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 3446777889999999999999999998876543 3789999999999999999999999998874
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400 481 NV----KALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (567)
Q Consensus 481 ~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 513 (567)
++ ..++.+|.++..+|++++|+..|++++...|
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 32 4567899999999999999999999987777
No 169
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.2e-05 Score=81.81 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=67.0
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEe--cCCCccCCCCCCCCCCCCC
Q 008400 169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV--KPQYGFGEKGKSASGNEGA 244 (567)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~i--p~~~~~g~~~~~~~~~~~~ 244 (567)
...||.|+|+|.+.. ||..|... +.+.+++|+|+++|||+.+|+||+.|+.+.|.+ |.+| ....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy--~a~~--------- 225 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDY--HAEE--------- 225 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEccccc--chhH---------
Confidence 788999999999966 78777765 889999999999999999999999999999766 5554 3322
Q ss_pred CCCCCeEEEEEEeecccc
Q 008400 245 VPPNATLQIALELVSWKT 262 (567)
Q Consensus 245 ip~~~~l~~~v~l~~~~~ 262 (567)
-.+.+..|.|.+..+..
T Consensus 226 -LaGK~a~F~V~vkeVk~ 242 (441)
T COG0544 226 -LAGKEATFKVKVKEVKK 242 (441)
T ss_pred -hCCCceEEEEEEEEEee
Confidence 35677889999987654
No 170
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0002 Score=64.70 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=73.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNV-----KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~-----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
.-|.-+++.|+|.+|...|..||.+.|..+ -.|.++|.|+++++.++.|+.++.+|++|.|.+-.+......+..
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 346677899999999999999999999763 467799999999999999999999999999998433333333444
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhcc
Q 008400 528 KMKEYNKKEAKFYGNMFAKMKSRA 551 (567)
Q Consensus 528 ~~~~~~~~e~~~~~~~f~~~~~~~ 551 (567)
++.... ..-.-|+++.....+.+
T Consensus 180 k~ek~e-ealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYE-EALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHH-HHHHHHHHHHHhCcchH
Confidence 443222 23446777776655554
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=3.2e-05 Score=53.17 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 466777777777777777777777777777777776665543
No 172
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.87 E-value=0.00011 Score=73.27 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=92.5
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---ChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
........|..+|++++|..|+-.|..||+++...... .......+-.+...+...+..||+++++.+.|+...-+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 34445677889999999999999999999998764321 112334455556666789999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+.++|.+..-++|.|.|+..+.+|.+|...+-.|.-
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877665543
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.00035 Score=59.38 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK 523 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~---n~~~~~~l~ 523 (567)
+++++|.++-.+|+.++|+..|.+++...... ..++..+|.+|..+|++++|+..+++++.-.|+ +..++..+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 47899999999999999999999999975443 679999999999999999999999999999888 666666655
Q ss_pred HHHHHHHHHHH
Q 008400 524 TLKEKMKEYNK 534 (567)
Q Consensus 524 ~~~~~~~~~~~ 534 (567)
.+....++.++
T Consensus 83 l~L~~~gr~~e 93 (120)
T PF12688_consen 83 LALYNLGRPKE 93 (120)
T ss_pred HHHHHCCCHHH
Confidence 55444444443
No 174
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00023 Score=70.95 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=98.8
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChH------------H-HHHHHHHHHHH------HhhHHHHHHh
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE------------E-KKQAKALKVAC------NLNNAACKLK 460 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e------------~-~~~~~~~~~~~------~~nla~~~~k 460 (567)
.-+.+.|..+|..|++.+|+-.|+++..+.++.....++ . ......+.... ++=-+...+.
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 445678899999999999999999999887765432111 1 11111111111 1222334456
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 531 (567)
.++|..|+.+..++++.+|++..+|..+|.++..+++.++|+-.|+.|..+.|...++..-|-.+.-..+.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 78999999999999999999999999999999999999999999999999999997777766655444433
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.80 E-value=5.9e-05 Score=74.97 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=88.7
Q ss_pred HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (567)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~ 472 (567)
..+......+-+.||.||-.|+|++|+..-+.-|++-..... +.....++.|+|.||.-+++|+.|+++|+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 455666778889999999999999999988877766432211 11223458999999999999999999999
Q ss_pred HHhccC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 473 KVLDLD----SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 473 ~al~~~----p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
+++.+. .. .+...|.+|.+|.-+.+|++|+.++.+-|.+.-+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 976542 22 2567899999999999999999999998876533
No 176
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.80 E-value=0.00014 Score=51.82 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
..+|.+|.+++++|+|++|+..++.+|+++|+|..+..+...+..++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999888887777766554
No 177
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.00017 Score=76.97 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=81.8
Q ss_pred HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
......+++.+|++|..+|++++|+.++++||+..|+.+..|+.+|++|-+.|++.+|..+++.|.++|+.+.-+.....
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 34466778999999999999999999999999999999999999999999999999999999999999999865444433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400 524 TLKEKMKEYNKKEAKFYGNMFAKMK 548 (567)
Q Consensus 524 ~~~~~~~~~~~~e~~~~~~~f~~~~ 548 (567)
+.. ++..+-.++..--.+|.+..
T Consensus 270 Ky~--LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 270 KYL--LRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHH--HHCCCHHHHHHHHHhhcCCC
Confidence 332 33333334444555565533
No 178
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00012 Score=70.87 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=71.9
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (567)
+.|.+|++.|-+.+|.+.++.+|...+.- ..++.++.+|.+..+...|+..+.+.|..-|.++.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 67889999999999999999999765421 12556677777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
.+.-.|++|..++++++|.+.|+.+++++|.|-+
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 7777777777777777777777777777766643
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00059 Score=66.13 Aligned_cols=123 Identities=16% Similarity=0.066 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 008400 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493 (567)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~ 493 (567)
+.+..+...+.-|...|.+... +.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455556666667777766654 7889999999999999999999999999999999999999988
Q ss_pred hcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008400 494 QMAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ 552 (567)
Q Consensus 494 ~l~~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~ 552 (567)
...+ -.+|...|++|+++||.|..+..+|.......+++.+ ....|..|++.+.....
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADDP 262 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCCc
Confidence 8754 5689999999999999998888888776555555543 34577777776655444
No 180
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00079 Score=65.36 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=96.5
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
+...|.-+-+.+..+....+++.|.....+|+...+.+... -.-+|.+++..|+|..|++.+..+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence 45567778888888888899999999999999887776544 456899999999999999999999
Q ss_pred hccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 475 LDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 475 l~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
++-||.. +..+-.+..||..+|+.++.+.++.++.+..++.........
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~ 290 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLAD 290 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHH
Confidence 9999987 678889999999999999999999999999887654433333
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.75 E-value=0.00012 Score=75.39 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=39.3
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+...|..+++.++++.|+..++++..+.|.+.++|+.+|.+|..+|+|++|+..++.+--+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 4455666666666666666666666666666666666666666666666666666554433
No 182
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.74 E-value=3.5e-05 Score=49.64 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.9
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
.+|+++|.||..+++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999974
No 183
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.73 E-value=0.00018 Score=76.99 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=97.1
Q ss_pred hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (567)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (567)
+..+.+.++-++|..+..+|-.+.+ +....|+-+|.++...|++.+|...|..|+.+||+++.+.
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~---------------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDP---------------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcch---------------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 3344455666777777777766554 3455688999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 486 YRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 486 ~~~a~a~~~l~~~~~A~~--~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
.-+|.+|+..|+-.-|.+ .+..|+++||.|.+++..++.+.+.+++..
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 999999999999988888 999999999999999999999988887665
No 184
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.69 E-value=0.00045 Score=72.38 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=97.5
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
.......+..+...|+.++|.+...++++.-+ +. ..-+...++..++++++++.+++.++.+
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~-----------------~l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DE-----------------RLVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CH-----------------HHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 34455668888999999999999999987321 11 0011223335599999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
|+++..++.+|++++..++|++|++.|+++++++|++.. ...+..+.....+.++. ...|++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHHh
Confidence 999999999999999999999999999999999999855 34677777766655543 456665443
No 185
>PRK11906 transcriptional regulator; Provisional
Probab=97.69 E-value=0.00034 Score=71.88 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHH---HhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---------cCHHHHHHHHHHHhccCCCC
Q 008400 414 KYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 414 ~~~~A~~~y~~al---~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---------~~~~~Ai~~~~~al~~~p~~ 481 (567)
....|+..|.+|+ .+.|.. ..+|.-+|.||... ..-.+|.+...+|+++||.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~---------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK---------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc---------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3577888899998 444332 33466666666654 24567888888888899999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
+.|++.+|.++...++++.|...|++|+.++|+...+....+.+...
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999888777776664333
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00034 Score=66.97 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=85.7
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT 524 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~ 524 (567)
.+|.|.-+++.|+|..|...+..-+..-|++ +.|+|++|.+++.+|+|+.|...|..+.+-.|+++ +..-.+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6789999999999999999999999998986 68999999999999999999999999999988875 55666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008400 525 LKEKMKEYNKKEAKFYGNMFAKMKSRAQGGR 555 (567)
Q Consensus 525 ~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~ 555 (567)
+..++++.. ..+++|...-++....+....
T Consensus 224 ~~~~l~~~d-~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTD-EACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHH-HHHHHHHHHHHHCCCCHHHHH
Confidence 666555444 455688888877776665443
No 187
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00029 Score=70.80 Aligned_cols=154 Identities=16% Similarity=0.048 Sum_probs=113.8
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------ChHHHHHHHHH------------HHHHHhhHHH
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------GDEEKKQAKAL------------KVACNLNNAA 456 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~e~~~~~~~~------------~~~~~~nla~ 456 (567)
+..++.+.+.++.|--..+-.+|++.|.++..++|.++.. .+.+.++.+.+ .+...--+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 4457888899999998999999999999999888765422 11111111111 0112235788
Q ss_pred HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 536 (567)
.|+...-|++||.++++|--+.|+.+|-.+..|.|+.+.|+|..|...|+...+.-|.|.++.+.|-++.--+.-. +
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~---d 711 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK---D 711 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch---h
Confidence 8888999999999999999999999999999999999999999999999999999999998888777764444332 3
Q ss_pred HHHHHHhhHhhhhccc
Q 008400 537 AKFYGNMFAKMKSRAQ 552 (567)
Q Consensus 537 ~~~~~~~f~~~~~~~~ 552 (567)
.+.|..-+.++.+..+
T Consensus 712 ~key~~klek~eki~e 727 (840)
T KOG2003|consen 712 AKEYADKLEKAEKIKE 727 (840)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.00028 Score=70.25 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=73.7
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-cCHHHHHHHHHHHhc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLD 476 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~ 476 (567)
.+..+.+.+ ..++..++.+|+..|++|+.+....... .....++.++|.+|... ++++.|+.+|.+|+.
T Consensus 74 Aa~~~~~Aa-~~~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 74 AAKAYEEAA-NCYKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333433333 3344457777777777777765543322 33466788999999998 999999999999988
Q ss_pred cCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 477 LDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 477 ~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
+-. +. ...+.+.|.++..+++|++|+..|+++....
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 622 12 4677899999999999999999999998864
No 189
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.2e-05 Score=72.82 Aligned_cols=80 Identities=30% Similarity=0.524 Sum_probs=70.3
Q ss_pred cCCCeEEEEEEcccCCCCCC--CCCEEEEEEEEEEcC--CCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400 35 GNQGLKKKLVKEGEGWDTPE--NGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (567)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~--~gd~V~v~Y~~~~~~--g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~ 110 (567)
...||.++|+..|.| +-|. .|..|.+||.....+ ++++|+|..-|+|+.+++|.---++-||..|..|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 457899999999999 6554 799999999987653 57999999989999999998888999999999999999998
Q ss_pred EEecC
Q 008400 111 FTIPP 115 (567)
Q Consensus 111 i~ip~ 115 (567)
|.+.-
T Consensus 87 F~~d~ 91 (329)
T KOG0545|consen 87 FWCDT 91 (329)
T ss_pred hhhhh
Confidence 87654
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.64 E-value=0.0019 Score=60.94 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=85.6
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-----------cCHHHHH
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE 468 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~Ai 468 (567)
......|..+|+.|+|..|+..|++.++..|.+... ..+++.+|.|++++ +...+|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 456788999999999999999999999998876532 23456666666554 3456899
Q ss_pred HHHHHHhccCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 469 KLCTKVLDLDSRNVK-----------------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 469 ~~~~~al~~~p~~~k-----------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
..++..+..-|++.. --+..|+-|+..|.|..|+.-++.+++--|+.......+..+
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 999999999998731 233578889999999999999999999999997655554444
No 191
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.62 E-value=0.0016 Score=53.85 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=80.3
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-----
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL----- 477 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~----- 477 (567)
...|...+..|-|.+|...|.+|.+.-...+. ++.=.-...-.-||.-|+.++..+|+|++++....++|.+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 45667778899999999999999987554332 2222233455677889999999999999999999999864
Q ss_pred --CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 478 --DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 478 --~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+.+ +..+-|++|.++..+|+.++|+..|+++-+.
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 3678899999999999999999999998754
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.61 E-value=0.00013 Score=50.18 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
+++.+|.+|..+|++++|++.++++++.+|+|+.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 478899999999999999999999999999999999998863
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.0019 Score=57.92 Aligned_cols=138 Identities=15% Similarity=0.210 Sum_probs=104.5
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
.......|+.+...|+|.+|..+|.+++.=+-... ..+++-+|.+++..+++..|...++.+.+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 34456778999999999999999999985321111 2347789999999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008400 479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ 552 (567)
Q Consensus 479 p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~ 552 (567)
|. .+...+..|++|..+|.+.+|...|+.++...|+- .++-.+.....++.... ..+..|..+++.+.....
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~-ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLR-EANAQYVAVVDTAKRSRP 228 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHhcch
Confidence 85 47788899999999999999999999999999886 34555555444433222 334566667766554443
No 194
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.00058 Score=72.85 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=72.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (567)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 531 (567)
..+|.-.+..++|.+|.++++..++++|-....||++|.|.++++++..|.++|..+..++|+|.++++.+..+..++++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence 33444455679999999999999999999999999999999999999999999999999999999999998887666655
Q ss_pred HHH
Q 008400 532 YNK 534 (567)
Q Consensus 532 ~~~ 534 (567)
..+
T Consensus 569 k~r 571 (777)
T KOG1128|consen 569 KKR 571 (777)
T ss_pred hHH
Confidence 543
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.54 E-value=0.0013 Score=57.09 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=62.3
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
+++.|...++.|+|.+|++.++.+....|.. ..|.+.++.+|+..++|++|+..+++.++++|.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 6788999999999999999999999987754 789999999999999999999999999999999874
No 196
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00016 Score=67.09 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=66.0
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
.-+.+++.-+.|..|+..|.+||.++|+.+..|-++|.||+++.+++.+..++++|++++|+......-++.+...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3466777889999999999999999999999999999999999999999999999999999986555555554333
No 197
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.48 E-value=0.00076 Score=74.14 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=98.1
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---------ChHHHHH------------HHHHHHHHHhhHHHHHHh
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQ------------AKALKVACNLNNAACKLK 460 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~~------------~~~~~~~~~~nla~~~~k 460 (567)
+--.|..|..--+..+|.++|.+|.++...+... ..+.++. ....+...+..+|..|++
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 3344544444445667777788777776554321 1111111 122334455668999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 534 (567)
.+++..|+..++.||+.+|++..+|.-+|.+|...|.|..|++.|.+|..++|.+.-.+-...-+.+...++++
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999997666665656666655554
No 198
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.0002 Score=45.95 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578888888888888888888888888888854
No 199
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.004 Score=57.88 Aligned_cols=135 Identities=20% Similarity=0.264 Sum_probs=94.6
Q ss_pred hhhhhhHHHhc-CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 402 KKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 402 ~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
+.+.|..+-.. .++++|+.+|+.|-++.... +......+|++..|.....+++|.+|+..|+++.+..-+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444333 67889999999998876543 233556677888888888899999999999998775444
Q ss_pred C------HHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400 481 N------VKAL-YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 481 ~------~ka~-~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~ 546 (567)
| +|-| +.-|.||+...+.-.|...+++..+++|...+ .++...++..+...++.....|-.....
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d-sREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD-SRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 4 4544 46688999999999999999999999999654 2334444444555555555555544433
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0013 Score=58.45 Aligned_cols=84 Identities=12% Similarity=-0.098 Sum_probs=73.1
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
.+..|.-++..|++++|...+.-...+||.|++.++-+|.|+..+++|++|+..|-.|..++++|+...-..+.|.-.++
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 55778888999999999999999999999999999999999999999999999999999999998766666666655555
Q ss_pred HHHH
Q 008400 531 EYNK 534 (567)
Q Consensus 531 ~~~~ 534 (567)
+...
T Consensus 120 ~~~~ 123 (165)
T PRK15331 120 KAAK 123 (165)
T ss_pred CHHH
Confidence 4443
No 201
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.43 E-value=0.00066 Score=67.49 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=70.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--cc--CHHHHHHHHHHHhccCCCCHH
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LK--DYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~--~~~~Ai~~~~~al~~~p~~~k 483 (567)
.+++.++++.|.+.++++-+..++ .+..++|.++.. .| ++.+|...|++.....+.+++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~ 202 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK 202 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence 445556666666666554433211 124455554444 33 688888888888777778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
.+..+|.|++.+|+|++|...++.|+..+|++.+....+.-+...+++.
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 8888899999999999999999999988888877766666665555444
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.43 E-value=0.0012 Score=55.49 Aligned_cols=63 Identities=30% Similarity=0.227 Sum_probs=57.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
.-|.+....++.+.|++.+.++|.+.|.++.+|.|+|+++.-.|+.++|+.++++|+++.-..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 346667788999999999999999999999999999999999999999999999999996443
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.43 E-value=0.0024 Score=65.87 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=93.5
Q ss_pred cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
.++|+.|+..|++.....+. +..-+|.+++..++..+|++..+++|...|.+...+...|..
T Consensus 182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 57788899888886654331 144588899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (567)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 536 (567)
++..++|+.|+...++|.++.|++...+..|..+...+++.+.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999988888776543
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.43 E-value=0.00024 Score=45.50 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
.+++++|.+++++|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 358899999999999999999999999999986
No 205
>PRK10941 hypothetical protein; Provisional
Probab=97.42 E-value=0.0016 Score=63.52 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=71.3
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
.+....+.|+-.+|.+.++|+.|+.++++++.++|+++.-+--||.+|.+++.+..|..+|+..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34555678999999999999999999999999999999988889999999999999999999999999999765444333
Q ss_pred H
Q 008400 525 L 525 (567)
Q Consensus 525 ~ 525 (567)
+
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 3
No 206
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.41 E-value=0.00082 Score=75.44 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=79.4
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh-HHHH-HH--HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKK-QA--KALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-e~~~-~~--~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
..+.-.|-.++..+++.+|... .++...+......- +... .+ ......+++.+|.||-++|++++|...++++|
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3445556666667777666666 55555443331100 0000 00 00111368899999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
+++|+|+.++.++|..|... ++++|+..+.+|+...
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999998763
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0027 Score=59.95 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=66.1
Q ss_pred HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
...++.|.+.+|+-.++|..|...+.+++..||.++.|-.++|.|++.+|+..+|++.++.++...|...
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4557889999999999999999999999999999999999999999999999999999999999999964
No 208
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.41 E-value=0.0013 Score=72.39 Aligned_cols=74 Identities=28% Similarity=0.241 Sum_probs=68.2
Q ss_pred HHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
|.-.+..++|++|++.|+++|+.||+|..|++-+|.++..+++ .++|.+.|..|.+++|+|.-+++.|..+.++
T Consensus 9 Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 9 AKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 3444567999999999999999999999999999999999999 9999999999999999999999988888776
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.41 E-value=0.0021 Score=62.28 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=62.7
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~ 519 (567)
++..|.-+++.|+|++|+..+++++...|... .+.+++|.+|+.+++|++|+..+++.+++.|+++.+-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 66788889999999999999999999999885 5569999999999999999999999999999987443
No 210
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.35 E-value=0.00063 Score=70.64 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=91.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (567)
-+...|+-..|+.+..+|+...|..... -..|+|...++-+....|-..+.++|.++...+-.+|-
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v--------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDV--------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcc--------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 3334688899999999999776543322 16799999999999999999999999999888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
+|++|+.+.+.+.|++.|+.|++++|++..+..-|..+..
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999999999998888877655
No 211
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.32 E-value=0.0017 Score=68.45 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=83.1
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
+.+.+--.|-.+...|+-++|...-..+++...... .||.-+|..+..-++|++||++|..||.+
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---------------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---------------VCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccc---------------hhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 344555667777777777888777777776443322 34777788888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
+|+|...|.-++....++++|+.....-.+.+++.|.+.+-+-.+....-.+
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 8888888888888888888888888777778888887765555444443333
No 212
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0057 Score=57.64 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=63.4
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK--EYNKKEA 537 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~--~~~~~e~ 537 (567)
.+|+--+||+..+.-|+.=+++..||..++..|..+++|++|.-||+..+-+.|-|......+..+.=-+. +..+-.+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35555666666666666666777899999999999999999999999999999999888888877643333 3333445
Q ss_pred HHHHHhhH
Q 008400 538 KFYGNMFA 545 (567)
Q Consensus 538 ~~~~~~f~ 545 (567)
+.|.+.++
T Consensus 212 kyy~~alk 219 (289)
T KOG3060|consen 212 KYYERALK 219 (289)
T ss_pred HHHHHHHH
Confidence 56655554
No 213
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.004 Score=60.79 Aligned_cols=76 Identities=24% Similarity=0.187 Sum_probs=62.8
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 526 (567)
|-.-|.-|+|.++|..|+..|.+.|...-. |.-.|.|||.|.+.+|+|..|+.++.+|++++|.+ ++..++-++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhhhH
Confidence 445688899999999999999999986433 35678899999999999999999999999999999 444444443
Q ss_pred HH
Q 008400 527 EK 528 (567)
Q Consensus 527 ~~ 528 (567)
..
T Consensus 162 c~ 163 (390)
T KOG0551|consen 162 CL 163 (390)
T ss_pred HH
Confidence 33
No 214
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0022 Score=67.40 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=91.0
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.-.-+++.+..+|+..+|..|++.|...++.++.+... ....++..|++.||+++.+.+.|.+++.+|-+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999998765422 223667889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+|.++-..+..-++....+.-++|+.++.+....
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999988888999999999999999888776654
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=97.26 E-value=0.0011 Score=68.21 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 008400 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (567)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~ 494 (567)
-.+|++.-.+|+++.+.++ .++..+|.+....++++.|+..+++|+.++|+.+.++|..|..+..
T Consensus 320 ~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 320 AQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 4455566666666655544 3477888888889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 008400 495 MADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 495 l~~~~~A~~~~~~al~l~P~n~ 516 (567)
.|+.++|+..+++|++++|.-.
T Consensus 385 ~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 385 NEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cCCHHHHHHHHHHHhccCchhh
Confidence 9999999999999999999863
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.002 Score=64.41 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=83.8
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
..+-+.||.+.-.|+|..|+++|++++.+...... +..-...++.+|..|.-++++++||.+.++-|.+..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999877543221 122334467899999999999999999999776532
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 480 ------RNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 480 ------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
....|++.+|.+|..+|+.++|+.+.++.+++
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34789999999999999999999999888876
No 217
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.18 E-value=0.0035 Score=66.24 Aligned_cols=86 Identities=12% Similarity=-0.022 Sum_probs=57.8
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
.++|+-+|+++-.+++.+.|...|..-++..|+.+-.|..+++.-...|+.-.|+..|+++..-+|+|...+.+.-++..
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777555544444444
Q ss_pred HHHHHH
Q 008400 528 KMKEYN 533 (567)
Q Consensus 528 ~~~~~~ 533 (567)
+....+
T Consensus 765 R~gn~~ 770 (913)
T KOG0495|consen 765 RAGNKE 770 (913)
T ss_pred HcCCHH
Confidence 443333
No 218
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.18 E-value=0.0012 Score=47.07 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=34.2
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~ 490 (567)
+++.+|..++++|+|..|..+|+.+|+++|+|..|.-.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 57789999999999999999999999999999887654443
No 219
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.13 E-value=0.0013 Score=65.47 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=73.8
Q ss_pred CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 008400 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (567)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~ 492 (567)
..|++|...|++.....+. ...+++.+|.|++.+|+|++|...+.+++..+|+++.++.|++.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~---------------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGS---------------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp TCCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3699999999986543321 1244778999999999999999999999999999999999999999
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCHHH
Q 008400 493 IQMADL-DLAEFDIKKALEIDPDNRDV 518 (567)
Q Consensus 493 ~~l~~~-~~A~~~~~~al~l~P~n~~~ 518 (567)
..+|+. +.+.+.+.+....+|+++-+
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 999998 67778888888899998644
No 220
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0025 Score=63.88 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=84.7
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
...+.-.|+.+...++.++|+-.|+.|..+-|. +..+|--+-.||+..+.+.+|.-..+.+++.-
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchh---------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777766443 34557778889999999999999999999888
Q ss_pred CCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 479 SRNVKALYRRA-QAYI-QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 479 p~~~ka~~~~a-~a~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
|++.+++-..| .+++ .-.--++|.+.++++|+++|....+-..+..+....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE 451 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh
Confidence 88888888876 3333 334457899999999999999865555555554433
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.06 E-value=0.0054 Score=60.49 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=100.0
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC----------CCChH-----H-------------HHHHHHHHHH
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SFGDE-----E-------------KKQAKALKVA 449 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~~~~e-----~-------------~~~~~~~~~~ 449 (567)
.+.+..+.|..+|...++.+|+..+.+.|..+.+.. ....+ + .-+.-..+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999988765321 00000 0 0011224566
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL---- 520 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~---- 520 (567)
+|.|++..+-++.+|.+++.+|...+.+--.. ..++..+|.||+.++.|++|++.|++|+++.-++.+...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 89999999999999999999999999874332 368888999999999999999999999999766654333
Q ss_pred --HHHHHHHHHHHHH
Q 008400 521 --EYKTLKEKMKEYN 533 (567)
Q Consensus 521 --~l~~~~~~~~~~~ 533 (567)
.|..+..++++..
T Consensus 165 cv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYE 179 (518)
T ss_pred hhhHHHHHHHHHhhh
Confidence 3444455555444
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0046 Score=60.75 Aligned_cols=103 Identities=20% Similarity=0.143 Sum_probs=77.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (567)
.+..+.+|..|+...+-.+... +|++ ..+-.-+|.|++++|+|++|+..|..+.+.+..+.+...+
T Consensus 31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 4666788999888877666321 1222 1223458999999999999999999999988888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
+|.|+..+|.|.+|...-.+| |+++....++-.+..+
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHH
Confidence 999999999999998776554 6666555555444333
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0016 Score=62.54 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=77.0
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.|....+.|..+|+.|+|+.|++.|+.|++.-...... -+|+|.|+++.++|..|+++..+.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll---------------AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL---------------AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh---------------HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 35667889999999999999999999999875544332 679999999999999999999998764
Q ss_pred ----CCC----------------C---------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008400 478 ----DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK 506 (567)
Q Consensus 478 ----~p~----------------~---------~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (567)
.|. | ..|+..++.++++.++++.|.+.+.
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 221 1 2577788999999999999987763
No 224
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.02 E-value=0.0019 Score=59.34 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=67.4
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
+.+..+++.+|..|-.+|-+.-|.-++.++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..+++||.+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 346667889999999999999999999999999999999999999999999999999999999999999984
No 225
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.99 E-value=0.019 Score=57.58 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=101.6
Q ss_pred HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (567)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~ 472 (567)
--|...|......|-..+-.|+|.+|.+...++-+.-+ ....+|.--|.+...+|+++.|=.+..
T Consensus 78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e---------------~p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE---------------QPVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc---------------chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35677888888889888889999999999888665422 123346666778888999999999999
Q ss_pred HHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400 473 KVLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 473 ~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 534 (567)
++-+..+ .+.-.+..+++.++..++|..|...+.++++..|.++.+.....++..+++.+++
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 9988733 4567788899999999999999999999999999999888888777777665553
No 226
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.98 E-value=0.0059 Score=64.59 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=101.3
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---------ChHHHHHHHHHHHH---------HHhhHHHHHHhccCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLKDYK 465 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~~~~~~~~~---------~~~nla~~~~k~~~~~ 465 (567)
.-+..++..|+...|......|.+..+.+... ...+.+..+.+... +|+.-+....-+++.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 44567778899999999999999887764211 11222333333322 4555666666789999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 466 ~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
+|++.|+++|+.-|...|.|+.+|+++..+++.+.|++.|...++..|...-.+-.|.++..+..
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988988888877664
No 227
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.024 Score=55.87 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=64.0
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
.+.+|.+++..-.|++||+.|.++|.-+|+....-..+|.||+++.-|+-+.+.+.-.|+.-|++.-+..+..
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3567778888889999999999999999988877889999999999999999999999999999976665544
No 228
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.94 E-value=0.0073 Score=51.28 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=67.8
Q ss_pred HHHHHhhHHHHHHhcc---CHHHHHHHHHHHhc-cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400 447 KVACNLNNAACKLKLK---DYKQAEKLCTKVLD-LDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (567)
Q Consensus 447 ~~~~~~nla~~~~k~~---~~~~Ai~~~~~al~-~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~ 521 (567)
...+.+|+|-|..+.. +..+-+..+...++ -.|. .-..+|.+|..|+++++|+.|+.+++..|+.+|+|..+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3445778888888765 56678888888886 4443 36789999999999999999999999999999999988877
Q ss_pred HHHHHHHHH
Q 008400 522 YKTLKEKMK 530 (567)
Q Consensus 522 l~~~~~~~~ 530 (567)
-+.++.++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 776665554
No 229
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.88 E-value=0.0049 Score=59.44 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=66.5
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
-++.|.-..+.|+.++|...+..||.++|.++.++.+.|.....-++.-+|-.+|-+||.++|.|.++.....+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44677777789999999999999999999999999999999999999999999999999999999876655544
No 230
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.00057 Score=66.88 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=75.0
Q ss_pred HHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---
Q 008400 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY--- 532 (567)
Q Consensus 456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~--- 532 (567)
.-.+..|.++.|+++|..++.++|.+.-.|-.||.+++.++....|+.+|..|++++|+...-.......+..+..+
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 34456788999999999999999999999999999999999999999999999999999764333333333333222
Q ss_pred ------------HHHHHHHHHHhhHhhhhccccccchhh
Q 008400 533 ------------NKKEAKFYGNMFAKMKSRAQGGRAHER 559 (567)
Q Consensus 533 ------------~~~e~~~~~~~f~~~~~~~~~~~~~~~ 559 (567)
.+.-..+.+..|-+..+...+.+..++
T Consensus 202 a~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHH
Confidence 223344555666555555554443333
No 231
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.85 E-value=0.011 Score=53.18 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 463 ~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
-|+.|.+.++.....+|.++.+|+|.|-+++.+.++ ++|+.-|+.||.++|+..++.-.++.+...+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999998654 67889999999999999888777777655443
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.83 E-value=0.0014 Score=67.18 Aligned_cols=71 Identities=30% Similarity=0.320 Sum_probs=63.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
-+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.+++..++|..|+.++.+|++++|.. ++..+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rr 78 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRR 78 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeec
Confidence 3667778899999999999999999999999999999999999999999999999999999997 4444443
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.79 E-value=0.0023 Score=40.43 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
|+|++|.++..+|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67777777777777777777777777777764
No 234
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.77 E-value=0.0017 Score=41.52 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
.+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 358899999999999999999999999999854
No 235
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.75 E-value=0.013 Score=62.95 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=79.0
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
+++..+.++...|++++|+.++......-.+....+-.+|.+|+.+|++++|...|+..++.+|+|......|..+....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 45567788899999999999999988877888899999999999999999999999999999999988888777775222
Q ss_pred H----HHHHHHHHHHHHhhHhhhh
Q 008400 530 K----EYNKKEAKFYGNMFAKMKS 549 (567)
Q Consensus 530 ~----~~~~~e~~~~~~~f~~~~~ 549 (567)
. ...+.-..+|..+-.+.+.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~ 109 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPR 109 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCcc
Confidence 2 2234445566655444433
No 236
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.033 Score=50.72 Aligned_cols=102 Identities=20% Similarity=0.158 Sum_probs=79.0
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
...+.+..++..+++++|+...+.++..-. -..+...+-.++|.+++.++.+++|+..++..-.-. -
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w 157 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTK------------DENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W 157 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccch------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H
Confidence 445777888999999999999998885421 123455557789999999999999999886653311 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
.+...-.+|.+++..|+-++|+..|++|++.++++
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 12335678999999999999999999999998655
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.68 E-value=0.0014 Score=42.67 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+|.++|.+|..+|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666664433
No 238
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.018 Score=60.50 Aligned_cols=115 Identities=23% Similarity=0.202 Sum_probs=82.3
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHH----HH-HHHHhhHHHHHHhc
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA----LK-VACNLNNAACKLKL 461 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~----~~-~~~~~nla~~~~k~ 461 (567)
..+...-|.+-+.++|++|++.-.+.+...+++... .++....++. .. ....+..|.|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 345555667777888888888888888776544321 1111111111 01 11125789999999
Q ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
++.++|+.+++ -+++...+.+..+|+.++++++|++|.+.|+..++-+.++.+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 99999999998 556777899999999999999999999999999887766543
No 239
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.54 E-value=0.0038 Score=38.43 Aligned_cols=32 Identities=44% Similarity=0.657 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
.+++++|.++..++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45666677777777777777777777666664
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.015 Score=55.30 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=63.5
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~ 518 (567)
-+++-|...++.|+|.+|+..++.+....|.+ .++++.++.++++.++|++|+..+++.+++.|.++++
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 37789999999999999999999999988765 6999999999999999999999999999999998753
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.51 E-value=0.021 Score=56.47 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=83.0
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC--
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-- 480 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-- 480 (567)
...|+++...+.|++|++.|+.|+++.....+. .+-..++..++..|..++++++|+-+..+|+++-.+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 347888888999999999999999987654433 233455889999999999999999999999876322
Q ss_pred ----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 481 ----N----VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 481 ----~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
+ .-++|+++.++..+|+.-.|.++++.|.++.
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 3578999999999999999999999998874
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.47 E-value=0.021 Score=60.98 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=83.3
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+--+..+|..+..+|+.++|++.|++|+.. ..+.+++...++..+|-|+.-+.+|++|..++.+.++.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~- 334 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE- 334 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-
Confidence 344567888888999999999999998842 12355677788999999999999999999999999885
Q ss_pred CCCHHHHH--HHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 008400 479 SRNVKALY--RRAQAYIQMADL-------DLAEFDIKKALEIDP 513 (567)
Q Consensus 479 p~~~ka~~--~~a~a~~~l~~~-------~~A~~~~~~al~l~P 513 (567)
.++.+++| -.|.|+..+++. ++|...|.++-.+-.
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 44566655 568899999999 888888888876643
No 243
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.053 Score=51.69 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=89.8
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhc---------c--CCCChHHHHHHHHHH-HHHHhhHHHHHHhc----cCHHH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEY---------D--TSFGDEEKKQAKALK-VACNLNNAACKLKL----KDYKQ 466 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~---------~--~~~~~e~~~~~~~~~-~~~~~nla~~~~k~----~~~~~ 466 (567)
...|..+.+.++|++|++.-.....+--. . ......+.+.+++.- -..+..+|.+|.++ .+++.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 34566788899999999887652221000 0 000111112222221 22344577777775 46899
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
|.-.|+..-+..|.++..+.-.|.|++.+++|++|...++.||.-++++++....+--+...++.-
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 999999988877888999999999999999999999999999999999988777776665555433
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.04 Score=51.81 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=87.0
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH----hccC-
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD- 478 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a----l~~~- 478 (567)
+++....+..+.+.|++.|++++.+....... .....++...+..+.+++.|.+|-..+.+- +..+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 44445555667788888888888776644322 233445677788888999999887777663 2333
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 479 -SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 479 -p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
+...|++.-.-.+|+...+|..|.++++...++.--+ -...-+.+.+.+..+++.+-..++++.+
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 3445777777778888889999999999988775333 2233344555666666666555555543
No 245
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.21 E-value=0.058 Score=55.74 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 008400 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (567)
Q Consensus 418 A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~ 497 (567)
-...|++|+...+.+. .++++...-..|.+.+.+.-..|.++|.++|+++..|.--|.-.+..+.
T Consensus 90 Iv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ 154 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL 154 (568)
T ss_pred HHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc
Confidence 3466777776655433 3366666555666779999999999999999999999999998888776
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 498 -LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 498 -~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
.+.|++.|.++|+.+|+++.++.++-++.-.....
T Consensus 155 ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~K 190 (568)
T KOG2396|consen 155 NIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEK 190 (568)
T ss_pred chHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877664443333
No 246
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.18 E-value=0.14 Score=48.47 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=74.0
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccC-------HHHHHHHHHHHhccCCC
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~-------~~~Ai~~~~~al~~~p~ 480 (567)
.+-....+++|++.|.-|+......... ......+++.+|=+|..+++ +..|+..|.+|++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4555678999999999999764422211 12456667788888888887 45566666666665432
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 481 ------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 481 ------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
....+|.+|..+..+|++++|+.+|.+++..--.+
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 26899999999999999999999999999865444
No 247
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.053 Score=50.63 Aligned_cols=109 Identities=19% Similarity=0.112 Sum_probs=77.9
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-cCHHHHHHHHHHHhc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLD 476 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~ 476 (567)
.+..+.+.+| .|++.+..+|+++..+|+++......+ .....-+..+|..|-.. .++++||.+|+++-+
T Consensus 73 aat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 73 AATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444 455668888888888888887655443 12223355667776654 899999999999966
Q ss_pred cCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 477 LDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 477 ~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
.-. ..-|+++..|.--..+++|.+|++.|+++....-+|.
T Consensus 143 ~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 143 YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 432 2257888888888899999999999999998877765
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.09 E-value=0.0074 Score=39.25 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
+|.++|.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999996654
No 249
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.07 E-value=0.021 Score=59.71 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=107.0
Q ss_pred hhhhhhhHHHh-cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 401 KKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 401 ~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
.+...+..|++ +|+..+|+.+|..|+.+.+.... ..+++.+|.+..+.|.-.+|--.+..|+.-.|
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 34455555554 89999999999999988765432 23477899999999998888888888887767
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccccccc
Q 008400 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK---LEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRA 556 (567)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~---~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~~ 556 (567)
.-..-+|-++.++..+++|.....+|..|++.+|...... +..-.|..++.+..+++.+..+.|...+.. -++.+.
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~nE~ke-Fqk~~~ 359 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTLNELKE-FQKQHD 359 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6666699999999999999999999999999999864322 223346666666666666666666554332 233444
Q ss_pred hhhcccC
Q 008400 557 HERRQQG 563 (567)
Q Consensus 557 ~~~~~~~ 563 (567)
|.+|+++
T Consensus 360 h~~~~~e 366 (886)
T KOG4507|consen 360 HYLRQQE 366 (886)
T ss_pred HHHHHHH
Confidence 5555443
No 250
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.06 E-value=0.0073 Score=38.05 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+++++|.||.++|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 47899999999999999999999999998874
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.22 Score=48.48 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=79.7
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH-------
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK------- 473 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~------- 473 (567)
.....+..+...+++.+|...|..++...+.+... ..-+|.||+..|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 35677888999999999999999999988765432 55677777777777555444332
Q ss_pred ---------------------------HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 008400 474 ---------------------------VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKT 524 (567)
Q Consensus 474 ---------------------------al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--n~~~~~~l~~ 524 (567)
.+..||++..+-+.+|..|...|++++|.+.|-..++.+-. +..+++.+-.
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle 280 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE 280 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 22346778888888888888888888888877777766533 2344544444
Q ss_pred HHHHH
Q 008400 525 LKEKM 529 (567)
Q Consensus 525 ~~~~~ 529 (567)
+....
T Consensus 281 ~f~~~ 285 (304)
T COG3118 281 LFEAF 285 (304)
T ss_pred HHHhc
Confidence 44443
No 252
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.04 E-value=0.072 Score=57.45 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCh-------HHHHHHHHHHHHHHhhHHHHHHhcc--------CHHHHHHHHHHHhcc--C
Q 008400 416 ARASKRYEKAVKYIEYDTSFGD-------EEKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLDL--D 478 (567)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~-------e~~~~~~~~~~~~~~nla~~~~k~~--------~~~~Ai~~~~~al~~--~ 478 (567)
-.|..+|-++..++........ ++..+.......+|.-+|.||.... +...+.....+++.+ +
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 3677778777776543221100 1111122223445556666665542 345566666666553 7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
|..+.+|.-+|..+...|++++|...|++|+.++| +..+...++++....++.+++. ..|.+.|.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~ 481 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA-DAYSTAFN 481 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 88889999999999999999999999999999999 5678888888877777666543 35555554
No 253
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.02 Score=58.77 Aligned_cols=120 Identities=17% Similarity=0.097 Sum_probs=84.3
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc-c-
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-L- 477 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~-~- 477 (567)
..+.-..+..|..|+|..|.+.....--........ .-+-.....++|+|.+++.++.|..++.++.+||+ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~------T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTI------TPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccc------cchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 334445556666677666665543321111100000 11122344568999999999999999999999996 1
Q ss_pred -------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 478 -------DS---------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 478 -------~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
.| .....+||.|..|+..|+.-.|-++|.+|...--.|+.++..+.+|
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 11 2357899999999999999999999999999999998888888776
No 254
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.96 E-value=0.0039 Score=40.00 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=29.4
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH
Q 008400 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (567)
Q Consensus 421 ~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~ 469 (567)
.|++||++.|.+... |+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhcC
Confidence 388999998877654 9999999999999999863
No 255
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.95 E-value=0.067 Score=42.96 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH
Q 008400 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~~~~~~~~ 533 (567)
.+..+.+.+..+|++..+.|.+|.+++..|++++|++.|-.+++.+++. ..+++.+-.+...+....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4566788899999999999999999999999999999999999998876 466666666666665543
No 256
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=95.95 E-value=0.055 Score=55.88 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--ccC-----HHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKD-----YKQA 467 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~~-----~~~A 467 (567)
.+.......+.|..+|..|+|.+|+..|+..|..++-....+.++..+++++...|.-.+-.+-+. .+. .+..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 344445566789999999999999999999999988877777788888888877766554433333 222 2233
Q ss_pred HHHHHHHh-----ccCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 468 EKLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 468 i~~~~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
.+.++.+. .+.|.|.---+|.|. ..++.++|.-|....++.|++.|....
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 34444432 234444333334444 566789999999999999999998753
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.94 E-value=0.22 Score=45.94 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=28.4
Q ss_pred HHHhccCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
++...+++..|+..+.+++..+| .....++.++..+...++++.|+..+.+++...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 44555555555555555544443 23344444444444555555555555555555544
No 258
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.84 E-value=0.11 Score=57.41 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=83.8
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (567)
.....++|.+|+....+.++..|+.... ..--|....++|++++|....+..-..-+++...+--
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a---------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYA---------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHH---------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 3456788999999999988877653322 3345778889999999995555544455667778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 534 (567)
+-.||..++++++|..+|+++...+|+ .+....+-.+..+.+.+.+
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999 5555555555555555543
No 259
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.81 E-value=0.015 Score=35.51 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=29.3
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
++.++|.|+..+++++.|+..+.++++++|.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 47899999999999999999999999988863
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.80 E-value=0.088 Score=48.70 Aligned_cols=96 Identities=30% Similarity=0.393 Sum_probs=68.0
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC-CHHHHH
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-NVKALY 486 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-~~ka~~ 486 (567)
.++..+++..|+..|.+++...+..... ...+.+++..+...+++..|+..+.+++...+. ...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNEL------------AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccch------------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 7888899999999999887743310110 111334444466777888888888888887777 577788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 487 RRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
.++.++...++++.|+..+..++...|..
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 88888888888888888888888877763
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.80 E-value=0.39 Score=47.62 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=91.4
Q ss_pred CCChHHHHHHHhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400 389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (567)
Q Consensus 389 ~~~~~e~~~~a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (567)
.+++......+..+.+-|..+++++ +|..|+.-.++|.++++.... .........+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4566777889999999999999999 999999999999999754210 11122345678888999999999999887654
Q ss_pred HHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400 468 EKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (567)
Q Consensus 468 i~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 513 (567)
.+ |.++++ -.|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44 444433 3466677776666666668888888888888887543
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.70 E-value=0.099 Score=51.88 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=88.1
Q ss_pred hHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh-ccCHHHHHHHHHHHhccCCCCHHHH
Q 008400 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKAL 485 (567)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (567)
+..-+.+..+.|...|.+|++..... ..+|...|...++ .++.+.|...++++++.-|.+...|
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~ 73 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 34444555889999999998432211 1347777888666 5777779999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS 549 (567)
Q Consensus 486 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~ 549 (567)
.....-+..+++.+.|+..|++++..-|... .++..+-..+...+... .-.+.++++...+..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999999999877765 35555555555444332 333455555554433
No 263
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.64 E-value=0.018 Score=53.56 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=56.9
Q ss_pred HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
...+.++.+.|.+.|+++|++-|.+...|||+|.-..+.|+++.|.+.|++.|+++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456789999999999999999999999999999999999999999999999999999853
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.56 E-value=0.23 Score=58.12 Aligned_cols=101 Identities=21% Similarity=0.126 Sum_probs=68.1
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC---
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--- 480 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--- 480 (567)
..|..++..|++.+|...|.+++......... .....++.++|.+++.+|++..|...+.+++.+-..
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34445555566666666666655543321111 122345678899999999999999999998875211
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400 481 -----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (567)
Q Consensus 481 -----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 513 (567)
..-.+..+|.++...|++++|...+.+++.+..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 123456778899999999999999999988643
No 265
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.11 Score=50.09 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=67.9
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 520 (567)
........|+=..+...++|+.|..+.++.+.++|.++..+--+|.+|.+++-+.-|+.++...++..|+...+..
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3444556788889999999999999999999999999999999999999999999999999999999999875433
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=0.34 Score=44.24 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHH------HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC-CCHH--
Q 008400 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-RNVK-- 483 (567)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~------~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p-~~~k-- 483 (567)
.....|-..|.+++..............++... .-....+.+|..+...++++.|+..++.++..-. .+.+
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 445688888999988775433321222222111 1222345677788889999999999999996532 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhccc
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHERRQQ 562 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l-~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~~~~~~~~ 562 (567)
+-+|+|++++.++.+|+|++.+...-. ++-......+ +.+....+ ..+..++.|.+....+ ..+..+++.+-++|
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg-~k~~Ar~ay~kAl~~~-~s~~~~~~lqmKLn 203 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKG-DKQEARAAYEKALESD-ASPAAREILQMKLN 203 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcC-chHHHHHHHHHHHHcc-CChHHHHHHHhHHH
Confidence 456899999999999999998875432 2222222332 33333333 2334566788877776 45555556665655
Q ss_pred Cc
Q 008400 563 GM 564 (567)
Q Consensus 563 ~~ 564 (567)
+|
T Consensus 204 ~L 205 (207)
T COG2976 204 NL 205 (207)
T ss_pred hc
Confidence 54
No 267
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.48 E-value=0.026 Score=54.66 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=69.7
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
.+.+.|......+....+.|+.++|.+.|..|+.+.|..... +..+|...-..++.-+|-.+|-+
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhe
Confidence 345556666667777888999999999999999998876643 66777777777888999999999
Q ss_pred HhccCCCCHHHHHHHHHHH
Q 008400 474 VLDLDSRNVKALYRRAQAY 492 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~ 492 (567)
||.++|.|.+|+.++++..
T Consensus 176 ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 176 ALTISPGNSEALVNRARTT 194 (472)
T ss_pred eeeeCCCchHHHhhhhccc
Confidence 9999999999999998754
No 268
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.41 E-value=0.15 Score=42.14 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=73.4
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHH----HHhccCHHHHHHHHHHHhccCCC
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC----KLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~----~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
++..+|.+|++-+|++..+..+.....+... -....+.-.++..+|.. ..|..-.-.|++.+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~-----~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS-----WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch-----HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 5678999999999999999998765543321 02223333333333322 11222355688999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
.+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999998888888999999988888763
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.40 E-value=0.23 Score=45.49 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=79.0
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (567)
...-..+.+.|+-+++.|+++.|++.|.++..+.... ...+.+++++-.+.+..++|..+..+..++-
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3345677899999999999999999999988764321 3456678888889999999999999999986
Q ss_pred ccCCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 476 DLDSR--NV----KALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 476 ~~~p~--~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
.+-.. +. +.-.-.|.+++..++|..|...|-.+..-.
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 54322 21 233345777888899999998887765433
No 270
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.27 E-value=0.28 Score=50.51 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=73.8
Q ss_pred hcCcHHHHHHHHHHHHHhhhccCCCChHHH----------HHHHHHH------------HHHHhhHHHHHHhccCHHHHH
Q 008400 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEK----------KQAKALK------------VACNLNNAACKLKLKDYKQAE 468 (567)
Q Consensus 411 ~~g~~~~A~~~y~~al~~~~~~~~~~~e~~----------~~~~~~~------------~~~~~nla~~~~k~~~~~~Ai 468 (567)
...+...+.+.|+.+|+++|...-....-+ ..+...+ .+++-..-..-+++++++.|.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 467888999999999998875321100000 0000001 111111122345567777777
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR--DVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~--~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~ 546 (567)
..|.+-|+..|.|..+|...|..-..||+.+.|...|+-|+....-+. .+++.+-....... .-++.++.|.+++.+
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~-E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG-EFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777775432221 12222222222222 223556677776653
No 271
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.55 Score=49.77 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=66.1
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
-+.+.+.+..+...|+|.+|++...+|++++.......+...+..+.....+...+|.++..+|+-.+|...|...+..+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 45678899999999999999999999988765543333333455556666677889999999999999999999999887
Q ss_pred CCC
Q 008400 479 SRN 481 (567)
Q Consensus 479 p~~ 481 (567)
|.+
T Consensus 255 ~~D 257 (652)
T KOG2376|consen 255 PAD 257 (652)
T ss_pred CCC
Confidence 654
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.25 E-value=0.2 Score=52.05 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=85.0
Q ss_pred CCChHHHHHHHhhhhhhh----hHH--Hh---cCcHHHHHHHHHHHHHhhhccCCCCh-------H-HH--HHHHHHHHH
Q 008400 389 DMNTEEKIEAAGKKKEQG----NTL--FK---AGKYARASKRYEKAVKYIEYDTSFGD-------E-EK--KQAKALKVA 449 (567)
Q Consensus 389 ~~~~~e~~~~a~~~~~~G----~~~--~~---~g~~~~A~~~y~~al~~~~~~~~~~~-------e-~~--~~~~~~~~~ 449 (567)
+.+...+++.|.+-.+.- ..| .. .....+|.+.|++|++.-+....... . +. ........-
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 345666666654433222 222 21 23368888899998887554322110 0 00 001112334
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNR 516 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~P~n~ 516 (567)
+...+|.|..++|+.++|++.+...++..|. +....+++..|++.++.|.++...+.+.-++ -|++.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 4567999999999999999999999988775 5779999999999999999999999987544 24543
No 273
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.18 Score=48.84 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=68.3
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (567)
+.+..+|..|++....-.+..+.+. ..+.-+|.||+...+|..|..+|++.-.+.|...+.-+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r---------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR---------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4566777777777665555444322 2367899999999999999999999999999998888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008400 489 AQAYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 489 a~a~~~l~~~~~A~~~~~~al 509 (567)
|+.+++.+.+.+|+.......
T Consensus 85 AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhc
Confidence 999999999999987665443
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.69 Score=43.77 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=72.4
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC---
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--- 478 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~--- 478 (567)
+...++.+-..++|++|.....+|.+..+++... ....+.|-..+....++..|.++..++++|..+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3333444445788999999999999877766543 2234446666777777889999999999987653
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 479 --p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
|+....-+-+|--.+..-+.++|+..|++++.+--.
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 343444444555566677889999999999887443
No 275
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.98 E-value=0.13 Score=58.33 Aligned_cols=62 Identities=6% Similarity=-0.079 Sum_probs=54.2
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
.|..+..++.+.|+++.|...++++++++|.+...|..++.+|...|++++|.+.++...+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 46777777888999999999999999999998889999999999999999999999877654
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.42 Score=47.18 Aligned_cols=108 Identities=16% Similarity=0.064 Sum_probs=67.1
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC------------ChH-HHHHHHH----------HHHHHHhhHHH
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDE-EKKQAKA----------LKVACNLNNAA 456 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~e-~~~~~~~----------~~~~~~~nla~ 456 (567)
+.....+..++.+|++.+|...+.+.|+-.|.+--. +.+ ....+.. ...-++--+|-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 455667778899999999999999999877654211 000 0000111 11112233456
Q ss_pred HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (567)
|....|-|.+|.+..++++++++.+.-|...++.++...+++.++.+...+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666667777777777777777777766766777777777777777666554
No 277
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.86 E-value=0.2 Score=41.86 Aligned_cols=81 Identities=19% Similarity=0.077 Sum_probs=65.4
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH----hc
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD 476 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a----l~ 476 (567)
++...|+..++.+++-.|+-+|+.|+..........+.+.++.-...+....|+|.-+..+|+-+-.++|++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999987776544455556666677778889999999999999999998765 55
Q ss_pred cCCCC
Q 008400 477 LDSRN 481 (567)
Q Consensus 477 ~~p~~ 481 (567)
+-|..
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 65653
No 278
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.86 E-value=0.54 Score=41.34 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=66.4
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
..|......++...++..+.+++.+.... ..++.+++.++...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 33445556678888999999988764211 25667888899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400 511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK 548 (567)
Q Consensus 511 l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~ 548 (567)
++|-|..+...+-++....++.... .+.|.++-+.+.
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A-~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEA-LRVYERYRRRLR 127 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHH-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHH-HHHHHHHHHHHH
Confidence 9999998888888877776665433 345555544443
No 279
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.85 E-value=0.3 Score=47.24 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008400 435 FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 435 ~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (567)
+.+.+.+-...+...++...|..|++.|.+.+|+++|++++.+||-+...+.-+-+.|..+|+--.|++.|++.-
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344566777788888888889999999999999999999999999999999999999999999888888777654
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.77 E-value=0.2 Score=58.63 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=78.8
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC--
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-- 480 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-- 480 (567)
...|..++..|++.+|...+.+++...+... ......++.++|.++...|++++|...+.+++.....
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g 525 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD 525 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 3467788889999999999999997543211 1123345678999999999999999999999875332
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 481 ----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 481 ----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
...++.++|.+++..|++++|...+++++.+
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1357788999999999999999999999986
No 281
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.75 E-value=0.44 Score=43.16 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=75.4
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKE 527 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~~ 527 (567)
.+.+|.....+|++.+|...|.+++. +--.++..++-+|++...++++-.|...+++..+.+|.- ++-..++.+...
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 66889999999999999999999987 344678899999999999999999999999999998874 344445555444
Q ss_pred HHHHHHH---------------HHHHHHHHhhHhhhhc
Q 008400 528 KMKEYNK---------------KEAKFYGNMFAKMKSR 550 (567)
Q Consensus 528 ~~~~~~~---------------~e~~~~~~~f~~~~~~ 550 (567)
...+..+ ..+..|..|+.+....
T Consensus 172 a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcch
Confidence 4433332 2244666777665433
No 282
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.74 E-value=0.36 Score=54.70 Aligned_cols=143 Identities=9% Similarity=0.012 Sum_probs=93.6
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhh--hcc----------C--CCChHHHHHHHHHH--------HHHHhhHHHH
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYD----------T--SFGDEEKKQAKALK--------VACNLNNAAC 457 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~--~~~----------~--~~~~e~~~~~~~~~--------~~~~~nla~~ 457 (567)
..+......|.+.|++++|++.|++.++.- |+. . ...++-..-.+... ...|..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 345566667777888888888887765431 110 0 00111111111111 1247778889
Q ss_pred HHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008400 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (567)
Q Consensus 458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~ 537 (567)
+.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...+++.++++|++......+..+..+.++.+++ .
T Consensus 472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A-~ 548 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA-A 548 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH-H
Confidence 999999999999887652 333 4567888889999999999999999999999999866666666666655554433 3
Q ss_pred HHHHHhhH
Q 008400 538 KFYGNMFA 545 (567)
Q Consensus 538 ~~~~~~f~ 545 (567)
+.++.|-.
T Consensus 549 ~v~~~m~~ 556 (697)
T PLN03081 549 KVVETLKR 556 (697)
T ss_pred HHHHHHHH
Confidence 34555544
No 283
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.62 Score=44.66 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
..+++.|.-.|+..-+..+... .+.+-+|.|++.+++|++|......+|..+++.+..+-|+-.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~---------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTP---------------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred chhhhhHHHHHHHHhcccCCCh---------------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4557888888877665333222 2367789999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHH-HHHHHHhCCCCHHH
Q 008400 492 YIQMADLDLAEFD-IKKALEIDPDNRDV 518 (567)
Q Consensus 492 ~~~l~~~~~A~~~-~~~al~l~P~n~~~ 518 (567)
-..+|.-.++... +.+....+|+++-+
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999988777654 45555667777543
No 284
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.42 Score=49.32 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=82.9
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka 484 (567)
-|.---.+++++.|...|.+||.....+ +.+++..|.|-+|.++.+.|....++|+.+-|.--+.
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql 143 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL 143 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH
Confidence 3333445678889999999999775443 3458899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 485 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
||..-..--.+|+...|...|++=++..|+..
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 99988888899999999999999999999864
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.21 E-value=0.37 Score=47.11 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 438 e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
++....++....++..++..+...++++.++...++.+..+|.+.++|.++-.+|+..|+...|+..|++.-++
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 44556678889999999999999999999999999999999999999999999999999999999999988874
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.12 E-value=1.1 Score=52.66 Aligned_cols=115 Identities=11% Similarity=-0.016 Sum_probs=69.7
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhh--hccC------------CCChHHHHHHHHH---------HHHHHhhHHH
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYDT------------SFGDEEKKQAKAL---------KVACNLNNAA 456 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~--~~~~------------~~~~e~~~~~~~~---------~~~~~~nla~ 456 (567)
..+...-..+.+.|++++|++.|.+..... ++.. ...++-......+ ....|+.+-.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 345556667777888888888877665421 1000 0000111111111 1234666677
Q ss_pred HHHhccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPD 514 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~P~ 514 (567)
+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|++++|+..|+...+. .|+
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 7788888888888888877765 345667777777777888888888877777664 454
No 287
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.04 E-value=0.082 Score=35.09 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+++|+|.+|..+|+|++|+.++.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34667777777777777777777777654
No 288
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.45 Score=50.76 Aligned_cols=77 Identities=18% Similarity=0.105 Sum_probs=65.3
Q ss_pred HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (567)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~ 519 (567)
-...++-|-|.-+++.++|..+++.|...+..-|.+ .|..-+++.||+.+.+.|.|.+.+..|-+.+|.+.-.+
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 344556688999999999999999999999876543 68888999999999999999999999999999996544
Q ss_pred HHH
Q 008400 520 LEY 522 (567)
Q Consensus 520 ~~l 522 (567)
.+.
T Consensus 432 ~~~ 434 (872)
T KOG4814|consen 432 LLM 434 (872)
T ss_pred HHH
Confidence 433
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.86 E-value=0.94 Score=46.24 Aligned_cols=113 Identities=19% Similarity=0.106 Sum_probs=71.0
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHH-hhhccCCCC------------------hHHHHHHHHHHHHHHhhHHHHHHhc-
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL- 461 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~e~~~~~~~~~~~~~~nla~~~~k~- 461 (567)
..+.+..++..|+-.+|+...+..+. .+....... .............+++-+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 34455566666777777777776666 222211000 0012233445566677777766666
Q ss_pred -----cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCC
Q 008400 462 -----KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPD 514 (567)
Q Consensus 462 -----~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~-----------------~~A~~~~~~al~l~P~ 514 (567)
+.++.++..|.+++.++|++.++|+..|..+..+=+. ..|+..|-+|+.+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7888888888888888888888888888876665222 2366777777777666
No 290
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.85 E-value=0.82 Score=46.20 Aligned_cols=111 Identities=16% Similarity=0.077 Sum_probs=77.6
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (567)
..+..+...|++++|.+.-..+++..-+.. + ..=.-.++.+++..=++..++.+...|+++.
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------------L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------------L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChh-----------------H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 344566678899999998888886532100 0 1111234667888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
.++.+|+.+++.+.|.+|...|+.|++..|+.. ....+......+.+-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~ 378 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence 888888888888888888888888888887753 3445555544444333
No 291
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.71 E-value=0.59 Score=49.98 Aligned_cols=74 Identities=8% Similarity=-0.049 Sum_probs=60.7
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
++..|..+...|+.++|+..+++++...... .-++|.+|-+|+.+.+|++|..++.+..+.+.-++.....+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 6788999999999999999999998643322 3478899999999999999999999999977666655555443
No 292
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.63 E-value=1.2 Score=52.53 Aligned_cols=113 Identities=10% Similarity=-0.082 Sum_probs=71.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh--ccCC------------CChHHHHHHHHH-------HHHHHhhHHHH
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIE--YDTS------------FGDEEKKQAKAL-------KVACNLNNAAC 457 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~--~~~~------------~~~e~~~~~~~~-------~~~~~~nla~~ 457 (567)
...+...-..+.+.|+++.|.+.|.+..+.-. +... ..++........ ....|+.+-.+
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455666778899999999999998875321 1000 000111111111 12456677777
Q ss_pred HHhccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 458 KLKLKDYKQAEKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 458 ~~k~~~~~~Ai~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
|.+.|++++|.+.+.+... +.|+ ...|..+-.+|.+.|++++|.+.|+...+.+
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 7777888888887777754 2333 4566667777888888888888888777765
No 293
>PLN03077 Protein ECB2; Provisional
Probab=93.60 E-value=0.84 Score=53.06 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=87.0
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHh--hhccCCC------------ChHHHHHHHHH--------HHHHHhhHHHHH
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF------------GDEEKKQAKAL--------KVACNLNNAACK 458 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~--~~~~~~~------------~~e~~~~~~~~--------~~~~~~nla~~~ 458 (567)
.+......+.+.|+.++|++.|++..+. .|+...+ .++-..-.+.. ....|..+..++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556677888899999999999987653 1221111 01111111111 223577788888
Q ss_pred HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
.+.|++++|.+.+++. .+.|+ +..|-.+-.++..-++.+.|....+++++++|++......+..+....++.+
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence 8888888888888775 34443 5556666667777888888888888889999998877777777666555544
No 294
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.57 E-value=1.1 Score=52.13 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=52.6
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
++|..|+-+|.+-+.+++|.+.+++.++.--+..+.|...|..++...+-++|...+++||+.-|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 346667778888888888888888887766667788888888888888888888888888888887
No 295
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.45 E-value=0.49 Score=36.42 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=53.2
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+....++|..+|.+.+.++|+..++++++...... .+-.++-.++.+|...|+|.+++++..+=+.
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999998765422 2344466778888889999998887765443
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.39 E-value=0.18 Score=33.37 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
..++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999976
No 297
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.39 E-value=0.088 Score=54.18 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=74.7
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHH-hhhccCC-CCh-HHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTS-FGD-EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~-~~~-e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~ 472 (567)
+.......+.|..+|+-+.|..++..|.+||+ .+..... ... ..-.....-...+.+|.|..|+..|++..|.+++.
T Consensus 280 ~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 280 LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 44566678899999999999999999999996 3322110 000 00001112233457899999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHhc
Q 008400 473 KVLDLDSRNVKALYRRAQAYIQM 495 (567)
Q Consensus 473 ~al~~~p~~~ka~~~~a~a~~~l 495 (567)
++...-..|+..|+|+|.|++..
T Consensus 360 ~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Confidence 99998888999999999998764
No 298
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.16 E-value=0.51 Score=38.20 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
...+.++|..|++...+..++......... ......+.+|+|.++...|++++|+..+++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356789999999999998877544332210 1122334566777777777777777777777665
No 299
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.12 E-value=0.77 Score=39.33 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~ 490 (567)
..+.+.+|..++++++|+.|+.+++..|+.+|+|..|.-.+-.
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4457789999999999999999999999999999887654433
No 300
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=1.9 Score=41.36 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=84.6
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc----cC
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD 478 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~ 478 (567)
....+.+...|+|.-.+..|.+.++..+. ....+...++.+.++.|+.+.|..+++++-+ ++
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e--------------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPE--------------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCc--------------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 34556677778888888888888875432 2234567889999999999999999996543 22
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400 479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (567)
Q Consensus 479 --p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 531 (567)
..+.-.+.+.+.+|...++|-+|-..|.+.+..||.+..+...-+.|.--+++
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 23455677788888888999999999999999999987655555555444443
No 301
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.69 E-value=0.45 Score=38.48 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=47.5
Q ss_pred HHHhccCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~---------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
-.++.++|..|++.+.+.+..... ..-+++++|..+...|++++|+..++.|+++.-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345789999998888888765321 1468899999999999999999999999998544
No 302
>PLN03077 Protein ECB2; Provisional
Probab=92.66 E-value=0.94 Score=52.64 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=52.6
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+|..+-.++...++.+.|....+++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3444544556788999999999999999999999999999999999999999999877764
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.54 E-value=1.8 Score=38.53 Aligned_cols=84 Identities=17% Similarity=-0.017 Sum_probs=68.9
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
..+..+..+-++.++...+...+..+--+.|+++..-.--|..|...|+|.+|+..|+.+..-.|....++.++..|...
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34556667777888888888888888888899988888889999999999999999999888888888888888888666
Q ss_pred HHHH
Q 008400 529 MKEY 532 (567)
Q Consensus 529 ~~~~ 532 (567)
+++-
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 5433
No 304
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=2.1 Score=47.54 Aligned_cols=125 Identities=19% Similarity=0.240 Sum_probs=86.8
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-------cCHHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-------KDYKQA 467 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-------~~~~~A 467 (567)
++.......+.|..+...|+|.+|+++|..+|-.++-....+.++..+++++...+...+......+ .+.+.+
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 3566777889999999999999999999999988876665566777777777766644443332222 223333
Q ss_pred --HHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400 468 --EKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (567)
Q Consensus 468 --i~~~~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~ 519 (567)
+..|=.-..+.|-+. -|+..--.++.++++|..|.....+.|++.|....+.
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 222222245556553 3444444689999999999999999999999875443
No 305
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.00 E-value=1.7 Score=50.64 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=71.6
Q ss_pred HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
...+|...|...+++++-++|...+.+||..-|. +.+..-.-|+.-++.|+-+.++..|+-.+.-+|.-.++|..|..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 3556888899999999999999999999999897 78888888999999999999999999999999998888877765
Q ss_pred HHHH
Q 008400 525 LKEK 528 (567)
Q Consensus 525 ~~~~ 528 (567)
...+
T Consensus 1643 ~eik 1646 (1710)
T KOG1070|consen 1643 MEIK 1646 (1710)
T ss_pred HHHc
Confidence 5443
No 306
>PRK10941 hypothetical protein; Provisional
Probab=91.83 E-value=0.73 Score=45.15 Aligned_cols=76 Identities=12% Similarity=-0.040 Sum_probs=64.2
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+.+.=..+.+.++|..|+++-++.+.+.|.+... +.-+|.+|.+++.+..|+.+++.-++..|+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 4455567889999999999999999999877643 5579999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008400 482 VKALYRRAQAY 492 (567)
Q Consensus 482 ~ka~~~~a~a~ 492 (567)
+.+-.-+.+..
T Consensus 249 p~a~~ik~ql~ 259 (269)
T PRK10941 249 PISEMIRAQIH 259 (269)
T ss_pred hhHHHHHHHHH
Confidence 88766655543
No 307
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=4.2 Score=42.39 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=74.5
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+.-+.-.|-...--+.|+.|..+|..|.+... ...+..-+..|+|..|+..++-+.- ++-.-.
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~------------~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~ 429 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE------------SIDLQAFCNLNLAISYLRIGDAEDL---YKALDL 429 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh------------HHHHHHHHHHhHHHHHHHhccHHHH---HHHHHh
Confidence 3455566677777777889999999999987643 2345667788999999997764432 222223
Q ss_pred cCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 477 LDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 477 ~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
+.|.| ..++|-.|.-.+..+++.+|...+.+.|+..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 34443 3578888999999999999999999999986
No 308
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.69 E-value=0.91 Score=44.41 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=65.0
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
++...+.-..+.+.|...-..|.++|..+|.|+..|.- .+.-+...++++.|++.|.++|+++|+++.++.++-++
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 35556666677889999999999999999999988876 45567888999999999999999999999988887665
No 309
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.61 E-value=2.3 Score=49.01 Aligned_cols=116 Identities=11% Similarity=0.077 Sum_probs=83.1
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh-------ccCHHHHHHHHHHHhc
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQAEKLCTKVLD 476 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-------~~~~~~Ai~~~~~al~ 476 (567)
.-.+++...+.|++|+..|++.....|......+ +.+..|...+. ...+.+|+.-+++.-.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYE------------AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG 547 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchH------------HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC
Confidence 3445777889999999999998877765443211 12223333222 1357788887776543
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
.|.-+--|+-+|.+|..+++|++-+++|..|++-.|+.+.+..+...+--++.+.
T Consensus 548 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 548 -GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred -CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999999998777776654444433
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.37 E-value=5.1 Score=36.63 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=61.8
Q ss_pred HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 008400 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLE 521 (567)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~ 521 (567)
...++..+|.-|++.|+++.|++.|.++....... ...+++.-++.+..+++..+...+.+|-.+- +.+++.+..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 44568899999999999999999999998875433 5678899999999999999999999998774 334444444
Q ss_pred HH
Q 008400 522 YK 523 (567)
Q Consensus 522 l~ 523 (567)
+.
T Consensus 115 lk 116 (177)
T PF10602_consen 115 LK 116 (177)
T ss_pred HH
Confidence 43
No 311
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.13 E-value=0.39 Score=31.54 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
.+|.++|.+-+..++|++|+.+|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888888888888888888888875
No 312
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.10 E-value=2.2 Score=44.68 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTL 525 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~ 525 (567)
.-+-.|+|.|.-++|+.++|++.++..++..|.. ..++..|-.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 3455688999999999999999999999988863 3455544443
No 313
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.95 E-value=10 Score=37.40 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhcc----CC---C
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R 480 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~----~p---~ 480 (567)
..++|+++.|...|.++-........ .........++|.|...++.+ +++.|+...++|+++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 45789999999999999887741111 112345566889999999999 999999999999877 22 1
Q ss_pred C-------HHHHHHHHHHHHhcCCHHHH---HHHHHHHHHhCCCCHHHH
Q 008400 481 N-------VKALYRRAQAYIQMADLDLA---EFDIKKALEIDPDNRDVK 519 (567)
Q Consensus 481 ~-------~ka~~~~a~a~~~l~~~~~A---~~~~~~al~l~P~n~~~~ 519 (567)
. .+.+..++.+|+..+.++.. ...++.+-.-.|+.....
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 1 36777889999999887644 444444544456655444
No 314
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.88 E-value=0.79 Score=29.68 Aligned_cols=33 Identities=24% Similarity=0.128 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 008400 483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN 515 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~--~~~al~l~P~n 515 (567)
+.++-+|..+...|+|++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567778888888888888888 44777777664
No 315
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.59 E-value=1.7 Score=43.01 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=70.2
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
|..+.....+.+..+.|...+.+|++..+.+...|...|..-+. .++.+.|.+.|+.+++..|.+.+++..+-.....+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 44555566666779999999999997777788899999998666 56666699999999999999988877776655555
Q ss_pred HHHHHHHHHHHHHhhHhhhh
Q 008400 530 KEYNKKEAKFYGNMFAKMKS 549 (567)
Q Consensus 530 ~~~~~~e~~~~~~~f~~~~~ 549 (567)
.+. ..-+..|.+....+..
T Consensus 84 ~d~-~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 84 NDI-NNARALFERAISSLPK 102 (280)
T ss_dssp T-H-HHHHHHHHHHCCTSSC
T ss_pred CcH-HHHHHHHHHHHHhcCc
Confidence 433 3445566666655433
No 316
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.30 E-value=1.2 Score=45.32 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=75.8
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC-
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD- 478 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~- 478 (567)
..+.+.|.-|...|+++.|++.|.++-.++.+. ...+..+.|+-.+-+-+++|.....+.++|...-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 345677888888999999999999987776532 2234457777777788999999999999987751
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008400 479 -------SRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 479 -------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (567)
.-.++...-.|.+++.++.|..|.+.|-.+.
T Consensus 219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1135677778899999999999999887664
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.00 E-value=1.1 Score=30.52 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 486 YRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 486 ~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+.+|++|..+|+++.|+..++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788888888888888888888884
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.82 E-value=11 Score=39.07 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=59.1
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLK 526 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~----~~~~~l~~~~ 526 (567)
++.=|.-.+..|+|.+|.-++.=+.+.+| ++.+|-.+|.|++...+|++|..++.. +-|++. .+.+.+..|.
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHH
Confidence 34446667789999999999999999999 899999999999999999999998864 445432 3444555555
Q ss_pred HHHH
Q 008400 527 EKMK 530 (567)
Q Consensus 527 ~~~~ 530 (567)
+.+.
T Consensus 541 Kh~~ 544 (549)
T PF07079_consen 541 KHLP 544 (549)
T ss_pred Hhhh
Confidence 5443
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.49 E-value=6.3 Score=40.11 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+..+...+..+.+.|+|+.|.....++.......... ...+.+..|......|+..+|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667788888999999999999999988765322211 112244556666667777777777766665
Q ss_pred c--C--------------------------------CCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCH
Q 008400 477 L--D--------------------------------SRNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 477 ~--~--------------------------------p~~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~l~P~n~ 516 (567)
. . ....++++.+|.....+ +..+++...|+.|.+++|++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 0 01147888888888888 889999999999999999987
Q ss_pred HHHHHHHHHHHHH
Q 008400 517 DVKLEYKTLKEKM 529 (567)
Q Consensus 517 ~~~~~l~~~~~~~ 529 (567)
.+...++.....+
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 7666666554443
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.48 E-value=0.51 Score=44.18 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=52.1
Q ss_pred hHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
..+++.++...|.+.|.+|+.+.+..... ++.++....|.|+++.|.+.|.++|++||.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34677899999999999999987754433 7889999999999999999999999999875
No 321
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.42 E-value=1.6 Score=42.32 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=51.1
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+.|.++|+.|+|+.|++.|+.+........- ..+...++..+..|+.++++.+..+..|-+.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 347888999999999999999999766554332 245666677888999999999998888876653
No 322
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.05 E-value=1.9 Score=40.74 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=54.9
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
+.|=-++..++......-+..|+..|.+|+......... .....+.+-+|..+.++|++++|++.+.+++.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 334444555555555555677777777777654331111 11223567899999999999999999999998
Q ss_pred cCCCCH-HHHHHHHHH
Q 008400 477 LDSRNV-KALYRRAQA 491 (567)
Q Consensus 477 ~~p~~~-ka~~~~a~a 491 (567)
....+. ..+.++|+-
T Consensus 194 ~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 194 SKKASKEPKLKDMARD 209 (214)
T ss_pred CCCCCCcHHHHHHHHH
Confidence 633322 366666653
No 323
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.44 E-value=14 Score=39.48 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=67.5
Q ss_pred chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhh
Q 008400 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405 (567)
Q Consensus 326 ~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~ 405 (567)
+.-..+..++..|.++....+.++.-|+. ...+..|...+.+
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPYHv--------------------------------------dsLLqva~~~r~q 297 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPYHV--------------------------------------DSLLQVADIFRFQ 297 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCcch--------------------------------------hHHHHHHHHHHHh
Confidence 45566888899999999888877654432 1234445555555
Q ss_pred hhHHHhcCcHHHHHHHHHHHHHhhh--ccCCCChHHH-HHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC-C
Q 008400 406 GNTLFKAGKYARASKRYEKAVKYIE--YDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-N 481 (567)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~--~~~~~~~e~~-~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-~ 481 (567)
|..-..++-.++|+-.|.+|+.-.- ......-+-. -+-+.+...+| ..-....+.|.|..|.++|+..|.++|. +
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp~eD 376 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDPSED 376 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCCcCC
Confidence 5555555555566666666654211 1000000000 11122333323 2333445789999999999999999997 5
Q ss_pred H
Q 008400 482 V 482 (567)
Q Consensus 482 ~ 482 (567)
+
T Consensus 377 P 377 (665)
T KOG2422|consen 377 P 377 (665)
T ss_pred c
Confidence 4
No 324
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=4.2 Score=42.42 Aligned_cols=102 Identities=23% Similarity=0.151 Sum_probs=82.0
Q ss_pred HHHhhhhhhhhHHHh-cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHH
Q 008400 397 EAAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKV 474 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~a 474 (567)
-.|....+.|..+|. ..+++.|..+.++|..+....+.+. ..+-.++.-+|.||.... .+..|.....++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 346667777877775 8999999999999998877666552 234455778899999887 899999999999
Q ss_pred hccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008400 475 LDLDSRN----VKALYRRAQAYIQMADLDLAEFDIK 506 (567)
Q Consensus 475 l~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (567)
+++..++ .|.++.+|+.+.-..+|.-|.+.+.
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 9987665 5888999999999999998887753
No 325
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=2.7 Score=41.70 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=46.5
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCCH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKAL--EIDPDNR 516 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al--~l~P~n~ 516 (567)
....|.++...++++++.+...+.-..-... ..-|.-.|.+|+.-++|+.|+..|.+-+ +++.++.
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 5567777777899999999887654332211 2334557889999999999999997655 4555554
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.91 E-value=4.9 Score=41.34 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=64.7
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-----------CC---ChH-HHHHHHHHHHHHHhhHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SF---GDE-EKKQAKALKVACNLNNAACKLKLKD 463 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-----------~~---~~e-~~~~~~~~~~~~~~nla~~~~k~~~ 463 (567)
+..+.+.+..+..+|++..|....++||-.++... .. .-+ ...+-+.+. .+.+.......+.|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff-lal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF-LALFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH-HHHHHHHHHHHhcCc
Confidence 45566777777888888888888888776544210 00 000 111222333 334456667778999
Q ss_pred HHHHHHHHHHHhccCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400 464 YKQAEKLCTKVLDLDSR-NV-KALYRRAQAYIQMADLDLAEFDIKK 507 (567)
Q Consensus 464 ~~~Ai~~~~~al~~~p~-~~-ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (567)
|..|++.|+-.+.+||. ++ -+++.+=...++.++|+--+..++.
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 99999999999999998 43 2333333334444555444444443
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.83 E-value=8.1 Score=42.36 Aligned_cols=92 Identities=25% Similarity=0.212 Sum_probs=73.2
Q ss_pred hhhhhhHHHhcC-----cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc---CHHHHHHHHHH
Q 008400 402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK 473 (567)
Q Consensus 402 ~~~~G~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~---~~~~Ai~~~~~ 473 (567)
....|..+++.. ++..|+..|.+|.+.-..+ +.+++|.||..-. ++..|..+|..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------------a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------------AQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 446777777642 7888999999998764332 2668888888765 67899999999
Q ss_pred HhccCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 008400 474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID 512 (567)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l----~~~~~A~~~~~~al~l~ 512 (567)
|... .+..|++++|.||..- .+...|..++++|-+..
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8764 6889999999998764 57899999999999987
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.80 E-value=0.74 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIK 506 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~ 506 (567)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356667777777777777766654
No 329
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.38 E-value=3.1 Score=32.12 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
..|..+-.++..+=+.|+|.+|+.+|..|++++..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999998754
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.44 E-value=18 Score=40.27 Aligned_cols=117 Identities=20% Similarity=0.086 Sum_probs=87.7
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-------CCC----hHHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (567)
+..+.-.|-.....+..++|.+.+.++++...... ..+ .+.......++..++..++.|.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 44455557777778888899999999998876533 111 1233445667788888999999999999999
Q ss_pred HHHHHHHhccC---C------CCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCC
Q 008400 468 EKLCTKVLDLD---S------RNVKALYRRAQAYIQMADLDLAEFDIK--------KALEIDPDN 515 (567)
Q Consensus 468 i~~~~~al~~~---p------~~~ka~~~~a~a~~~l~~~~~A~~~~~--------~al~l~P~n 515 (567)
......+.... | ..+..+|-.|..+...|+.+.|...|. .+....+.+
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 99988876542 2 247889999999999999999999998 555555554
No 331
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.43 E-value=3.2 Score=32.16 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
..|..+..+|..+=+.|+|.+|+.+|..||+.+..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34677778889999999999999999999998654
No 332
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=86.38 E-value=4 Score=45.58 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=70.3
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~ 539 (567)
..++|.+|+..|.++++..|+...|....|..+.++|.+++|..+++..-.+-+++......+..|.+.+++..+. -..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~-~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA-VHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH-HHH
Confidence 3578999999999999999999999999999999999999999888877777777777777777787777665542 235
Q ss_pred HHHhhHhhh
Q 008400 540 YGNMFAKMK 548 (567)
Q Consensus 540 ~~~~f~~~~ 548 (567)
|.+...+..
T Consensus 100 Ye~~~~~~P 108 (932)
T KOG2053|consen 100 YERANQKYP 108 (932)
T ss_pred HHHHHhhCC
Confidence 555544433
No 333
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.31 E-value=16 Score=36.89 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HH-HHHHHHHHHH
Q 008400 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM-KE-YNKKEAKFYG 541 (567)
Q Consensus 464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~-~~-~~~~e~~~~~ 541 (567)
.+..+..+++||+.+|++.+.+..+-.+.....+-++..+-+++++..+|++..++..+-...+.. .. .-..-+..|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 466778889999999999999999989999999999999999999999999987777665543331 11 1234567888
Q ss_pred HhhHhhhhccccc
Q 008400 542 NMFAKMKSRAQGG 554 (567)
Q Consensus 542 ~~f~~~~~~~~~~ 554 (567)
+.++.+.......
T Consensus 127 ~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 127 KCLRALSRRRSGR 139 (321)
T ss_pred HHHHHHHHhhccc
Confidence 8888887666543
No 334
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.97 E-value=2.5 Score=43.81 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=63.3
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLE 521 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~--n~~~~~~ 521 (567)
.-.+.+++..|-||+.+++|.+|++.+..+|..-...-..++.+..-+-. .+..|+....+--++.+.|. +..+...
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~ 240 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ 240 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34566789999999999999999999999876421111122222222222 34456666777777788886 4444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhHhh
Q 008400 522 YKT-LKEKMKEYNKKEAKFYGNMFAKM 547 (567)
Q Consensus 522 l~~-~~~~~~~~~~~e~~~~~~~f~~~ 547 (567)
++. ...+..+-+..+-..|..+|..-
T Consensus 241 lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 241 LKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 432 23333333334566888888754
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=85.50 E-value=6.3 Score=33.11 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=55.0
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
|-.+--....+...|+|++++..-.+||.+........+++. .+-+.+-+++|.+.-.+|+.++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344555667788899999999999999999877654433322 234556789999999999999999999988553
No 336
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.48 E-value=5.9 Score=30.42 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=30.6
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
..|..+-.++..+=+.|+|.+|+.+|+.|++.+..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999999999999998754
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.21 E-value=4.6 Score=41.55 Aligned_cols=102 Identities=22% Similarity=0.162 Sum_probs=74.6
Q ss_pred cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc--------------
Q 008400 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-------------- 477 (567)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-------------- 477 (567)
...|+++.+.|..++.....+.- -..-......+..++.++.++..+|++..|-+.+++||-.
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l---~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNAL---INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHH---HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45677788888877764311000 0011222345667889999999999999999999998631
Q ss_pred CCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Q 008400 478 DSR------------N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR 516 (567)
Q Consensus 478 ~p~------------~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-n~ 516 (567)
++. | -.|+++....+...|-+..|.++++-.+.+||. |+
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 111 1 368999999999999999999999999999999 55
No 338
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.04 E-value=4.9 Score=35.17 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
.....+.+|+.++..|+|.-|...++.++..+|+|.+++.+...+...+...
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3456666777777777777777777777777777777777666665555433
No 339
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.99 E-value=28 Score=31.10 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=74.6
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
...+.+......+.++..++...+...--+-|..... -.--|..++..++|.+|+..++.+.+-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4455666666777778877766665433333333322 4456888999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
|..+-+--.+|.|+..+++.+= ..+-..+++..+ +.....+.+.+..
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred CCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 9888777778899999988641 112234455443 5556666555533
No 340
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.95 E-value=8.7 Score=39.09 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=76.0
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH---hccCCCC
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV---LDLDSRN 481 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a---l~~~p~~ 481 (567)
.+..+|+.|+..++-...+.+-+..| |-.++..|...+--+.++.-++++ -.+.|+|
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~eP--------------------HP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEP--------------------HPDIALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCC--------------------ChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 34556666666666666665554433 456777777777767777766665 4567999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
....+.++.+-+.-|+|..|...-+.+...+|... +..++..+...
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeA 374 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEA 374 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhh
Confidence 99999999999999999999999999999999873 45555555443
No 341
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=84.81 E-value=5.2 Score=30.80 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
+..|..+..+|...=+.|+|.+|+..|..+++++..
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345677788888888899999999999999998754
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.58 E-value=12 Score=33.01 Aligned_cols=82 Identities=11% Similarity=-0.068 Sum_probs=59.3
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 530 (567)
+.....+.+...+..++.......--+.|+++..-.--|..|...|+|++|+..|+...+-.+...-.+.++..|...++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444455557777777777777767778888887888888888888888888888877777666777777777766554
Q ss_pred HH
Q 008400 531 EY 532 (567)
Q Consensus 531 ~~ 532 (567)
+-
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 43
No 343
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.54 E-value=9.1 Score=37.57 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (567)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (567)
.+.-.+..+++..|...+..++..+|.+..+..-++.||...|+.+.|...|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344555789999999999999999999999999999999999999877666543
No 344
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.50 E-value=1.5 Score=28.74 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
+|..+|.+-+..++|.+|+.++.++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999863
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.20 E-value=11 Score=41.96 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=48.9
Q ss_pred HHHhhHHHHHHhccCHHHHHHHHHHHhcc---------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL---------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (567)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~---------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (567)
.+|.-.|+..-..|+.+.|+.+|..|-.. ...+-.|.|.+|+-|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45666677777788888888888877432 244567899999999999999999999987
Q ss_pred HHHh
Q 008400 508 ALEI 511 (567)
Q Consensus 508 al~l 511 (567)
|..+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 7543
No 346
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.14 E-value=14 Score=38.05 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=73.5
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHhCCCCHHHH
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQ---MADLDLAEFDIKKA-LEIDPDNRDVK 519 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~----~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~a-l~l~P~n~~~~ 519 (567)
..+..|+=.+|...++|+.-++..+..-.+ -++.....+..|.|+-+ .|+.++|+..+..+ ....+.+.+..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344668888999999999999988887665 34567778888999999 99999999999994 45566677888
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHhhH
Q 008400 520 LEYKTLKEKMKE--------YNKKEAKFYGNMFA 545 (567)
Q Consensus 520 ~~l~~~~~~~~~--------~~~~e~~~~~~~f~ 545 (567)
-.++++.+.+-. ...+.-.+|++-|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 888887665422 22334457777775
No 347
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=83.60 E-value=4.9 Score=30.94 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
+..|..+..+|...=..|+|++|+..|..||+++-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999999998654
No 348
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.58 E-value=21 Score=36.48 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=74.2
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (567)
....|+|+.|++..........- +....+..+..++...|... -.-+...|..+..+++++.|+.+-+-.--
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 34456677766666554432111 11122333344343333333 33468999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 489 a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
+++|+..|+..++-..++.+-+.+|-- ++...+..+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP-~ia~lY~~a 305 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHP-DIALLYVRA 305 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCCh-HHHHHHHHh
Confidence 999999999999999999999998864 455555443
No 349
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.93 E-value=4.9 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.1
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
+.|..+..+|..+=+.|+|++|+..|.+|+..+..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45777788888888999999999999999998653
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=82.92 E-value=3.9 Score=43.05 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=62.3
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l---~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 534 (567)
...+..|+.+|.+++..-|.....|.++|.++++. ++--.|+.++..|++++|....++-.|.++...+....+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 35678899999999999999999999999999986 466789999999999999998777777777666665554
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.92 E-value=27 Score=38.87 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHhhhhhhhhHHH-hcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 398 AAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 398 ~a~~~~~~G~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
.|......|..++ ...+++.|..+.++++.+... ... ..++..+.+-++.++.+.+... |+..|+++++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 4666778888888 589999999999999988765 222 2445555666688888887776 9999999988
Q ss_pred cCCC----CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 008400 477 LDSR----NVKALYRRAQAYIQ--MADLDLAEFDIKKALEID--PDNRDVKLEYK 523 (567)
Q Consensus 477 ~~p~----~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~--P~n~~~~~~l~ 523 (567)
.-.+ ...-.|++-++.+. .+++..|+..++....+. ..++.+.....
T Consensus 128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 6554 45556666544333 369999999999998876 45655444433
No 352
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.62 E-value=6.1 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
+..|..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999998653
No 353
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.04 E-value=28 Score=34.37 Aligned_cols=105 Identities=24% Similarity=0.085 Sum_probs=73.5
Q ss_pred hhhhhhhHHHh----cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-----c--CHHHHHH
Q 008400 401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK 469 (567)
Q Consensus 401 ~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~Ai~ 469 (567)
.....|..++. ..++.+|...|.+|.+.-.... ..+.++++.+|..- - +...|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 44556666665 4489999999999987633211 22355666666653 1 3347899
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
.+.++-... ++.+.+++|.+|.. ..++.+|..+|.+|.+... ......+.
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 998887764 88999999988865 4589999999999999875 33444444
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.00 E-value=10 Score=35.52 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=58.8
Q ss_pred HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
-.++.+...+||.....-++.+|.+.-.-..+-+.|.-.|+|++|...++-+-+++|+...-...++.+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 456778899999999999999999988777788889999999999999999999999987555555443
No 355
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.40 E-value=11 Score=29.24 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC------CCChHHHHHHHHHHHHHHhhHHHHHHhc
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL 461 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~e~~~~~~~~~~~~~~nla~~~~k~ 461 (567)
.+.|-...++|..+=..|+.++|+.+|+++++.+.... ....++++....+..+.-.|+..+-.++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888888999999999999999876432 2234667777777777777766665443
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.35 E-value=12 Score=38.52 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (567)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~ 539 (567)
.+..||+.+++.+.|+....+.+.++|.+..-+...+.|.+.+..+.++.+..
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999554445556777788887766543
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.25 E-value=71 Score=36.29 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=78.9
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
....-..-.+=.+.-..+|.+|-....++...++....... ..+.....--.|.+.+..++++.|++.++.++.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ------GDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33334444555666678899998888888877665321111 112222233456777788999999999999999
Q ss_pred cCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 477 LDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 477 ~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
.-|.+ .-++...|.++.-.|++++|......+.++
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 87765 467888999999999999999999998887
No 358
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=81.22 E-value=20 Score=34.20 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH-HHH-HHHHHHHhc-cC-CCCHHH
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY-KQA-EKLCTKVLD-LD-SRNVKA 484 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~-~~A-i~~~~~al~-~~-p~~~ka 484 (567)
+|..|+|+.|++...-||+..-..+... ......+...-.++-|....+.|+. +-. ...+..+.. .+ |+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 4557999999999999998754333210 0011122233344555556666641 111 111222211 11 344444
Q ss_pred HH--HHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400 485 LY--RRAQAYI---------QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (567)
Q Consensus 485 ~~--~~a~a~~---------~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 531 (567)
-+ -.|.+++ ..++...|+..|++|+.++|+- -++..+.++.++++.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence 44 4455553 3467889999999999999775 477777777777653
No 359
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.67 E-value=9.8 Score=29.11 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=29.8
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
+..|..+...|...=+.|+|++|+.+|..|++.+..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345666777888888899999999999999998654
No 360
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.45 E-value=5.4 Score=39.14 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=50.0
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
|+.+|.+|+.+.|.+-..|..+|..+...++.-.|+-+|-+++-..--.+.++..|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997654456666666665444
No 361
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.23 E-value=14 Score=43.31 Aligned_cols=108 Identities=17% Similarity=0.075 Sum_probs=80.4
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
.+.+++..+..+.+.+++++|+..-.+|.-+.+....... .-....|.|++...+..++...|+..+.+++.+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds-------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS-------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC-------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 4566777888888889999998888887766554332211 112334888999888999999999999998764
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 478 --------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 478 --------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
.|.-.-..-+++..+..+++++.|+.+++.|+++.
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 24334455688888899999999999999999863
No 362
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=44 Score=32.38 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=88.4
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-cCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLDLDSRNVKALYR 487 (567)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (567)
+++...-.+|++.-..+|++.+.+... +..+-.|...+ .+..+-+.+..++++-+|.|-..|.-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTV---------------W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH 117 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTV---------------WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH 117 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH
Confidence 344455678889999999887765543 44444454444 36778888999999999999999999
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400 488 RAQAYIQMADLD-LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (567)
Q Consensus 488 ~a~a~~~l~~~~-~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f 544 (567)
|-.+...+|+.. .-+...+.++..|.+|-.+++...-+-+..+..+ .|-+....++
T Consensus 118 Rr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~-~EL~y~~~Ll 174 (318)
T KOG0530|consen 118 RRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE-DELAYADELL 174 (318)
T ss_pred HHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHH
Confidence 999999999888 8889999999999999888887777655555532 3434433333
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.80 E-value=23 Score=38.91 Aligned_cols=113 Identities=18% Similarity=0.040 Sum_probs=77.6
Q ss_pred HhhhhhhhhHHHh-----cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-----CHHHHH
Q 008400 399 AGKKKEQGNTLFK-----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----DYKQAE 468 (567)
Q Consensus 399 a~~~~~~G~~~~~-----~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-----~~~~Ai 468 (567)
+......|..++. .++.+.|+..|+.|...... ........+.+.+|.||.+.. ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 3444555555553 36789999999998873100 000001223678999999853 788999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 469 KLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
.++.++-.+ .++.+.|++|.+|..-. ++..|.++|..|.+.- +..+.-.+..|
T Consensus 314 ~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~ 369 (552)
T KOG1550|consen 314 KLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALC 369 (552)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHH
Confidence 999998775 57899999999999876 6789999999998653 33344444444
No 364
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=79.79 E-value=4.8 Score=39.52 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 008400 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (567)
Q Consensus 418 A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~ 494 (567)
|.+.|.+|+.+.|..... |+.+|..+...++.-.|+-+|-+++......+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999999987755 99999999999999999999999998776678888888888877
No 365
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=19 Score=38.64 Aligned_cols=67 Identities=22% Similarity=0.001 Sum_probs=28.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHH
Q 008400 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD-IKKALEIDPDNRDVKL 520 (567)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~-~~~al~l~P~n~~~~~ 520 (567)
++..+..++....+.-....++..+|+++.++.++|.+....+....|... ...|....|+|..+..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 333344444444444444444444444444444444444444333332222 2224444444443333
No 366
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.32 E-value=9.3 Score=30.57 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.7
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+.+.+|.+++..|+++.|++.+-.+++.++++
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 47789999999999999999999999998876
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=78.75 E-value=7.1 Score=37.91 Aligned_cols=72 Identities=15% Similarity=0.017 Sum_probs=60.7
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka 484 (567)
.=+.+...+++..|.+.-.+.+.+.|.+... ..-+|.+|.+++.+.-|+.++...++..|+.+.+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3345677899999999999999998877644 5679999999999999999999999999999887
Q ss_pred HHHHHHH
Q 008400 485 LYRRAQA 491 (567)
Q Consensus 485 ~~~~a~a 491 (567)
-.-+++.
T Consensus 252 ~~ir~~l 258 (269)
T COG2912 252 EMIRAQL 258 (269)
T ss_pred HHHHHHH
Confidence 6665553
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.43 E-value=3 Score=24.56 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHhhHHHHHHhccCHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCT 472 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~ 472 (567)
+++++|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 47799999999999999998875
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.25 E-value=15 Score=38.41 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=75.1
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (567)
..-...+..|+...|-+....+|+..+.++.. ..-++.++-.+|.|+.|..+..-+-..--...+
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~ 358 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS 358 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch
Confidence 33345667889999998888898887776654 445788888999999998888777655555667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~ 518 (567)
++--+-+.+..++++++|...-...|.-+-++.++
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence 77777778888999999988877777655555543
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.91 E-value=22 Score=34.49 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC--CC----HHHHHHHHH
Q 008400 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--RN----VKALYRRAQ 490 (567)
Q Consensus 417 ~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p--~~----~ka~~~~a~ 490 (567)
..+..+++|+..+..... ......+...+|.-|++.|+|++|++.++.+...-. .. ...+.++..
T Consensus 156 ~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE 226 (247)
T ss_pred HHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 445556666655443222 234455577899999999999999999999965422 11 466778889
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 008400 491 AYIQMADLDLAEFDIKKA 508 (567)
Q Consensus 491 a~~~l~~~~~A~~~~~~a 508 (567)
|+..+|+.+..+...-+.
T Consensus 227 Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999988887665443
No 371
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.66 E-value=73 Score=31.79 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=65.8
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------N--VKALYRRAQAYIQMADLDLAEFDIKKALEI--DPD 514 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~------~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~P~ 514 (567)
+....+..-+|..|-+.++|..|.+.+.- +.++.. + ..-+.++|++|+..++-.+|..+.+++--+ +..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 44566788899999999999999876643 333321 1 234568899999999999999999887543 557
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 008400 515 NRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 515 n~~~~~~l~~~~~~~~~~~ 533 (567)
|....-+++.|..+.-+.+
T Consensus 179 Ne~Lqie~kvc~ARvlD~k 197 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYK 197 (399)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8888888888877765444
No 372
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.05 E-value=20 Score=27.42 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
...|..+..+|..+=..|+|++|+.+|..|++.+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456677788888888899999999999999998754
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=76.92 E-value=12 Score=28.82 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 008400 500 LAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 500 ~A~~~~~~al~l~P~n~~ 517 (567)
+|++.|.++++..|++..
T Consensus 31 ~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhCCChHH
Confidence 344445666667777754
No 374
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.91 E-value=39 Score=28.11 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=49.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCC
Q 008400 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~k---a~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~n 515 (567)
+|.-++..|++-+|++..+..+...+++.. .+...|..+..+.. .-.|+++|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 567788999999999999999998877654 34455777766542 357899999999999988
No 375
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.88 E-value=15 Score=35.54 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=69.5
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~ 538 (567)
+...-..|++....+|.++|.|-..|.-|-.++..++ +..+-+.++...++-+|+|-.++...+.+.+.++...-+|-.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 4445577888899999999999888877777777664 678888999999999999999999988888887755546666
Q ss_pred HHHHhhH
Q 008400 539 FYGNMFA 545 (567)
Q Consensus 539 ~~~~~f~ 545 (567)
+-++|+.
T Consensus 135 f~~~~l~ 141 (318)
T KOG0530|consen 135 FTKLMLD 141 (318)
T ss_pred HHHHHHh
Confidence 7777776
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.52 E-value=23 Score=27.42 Aligned_cols=58 Identities=16% Similarity=-0.010 Sum_probs=43.1
Q ss_pred hHHHHHHhccCHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k---a~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
..+.-.+..++..+|+....++|+..++... ++=.+..||...|+|.+++++-.+=+.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455778899999999999998877654 444567788999999988877655443
No 377
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=76.50 E-value=36 Score=37.15 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=26.9
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHh
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~ 428 (567)
-+.|.-+-+.|..-++..+++.|++...+|...
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 345777788888888889999999999988865
No 378
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.89 E-value=14 Score=41.16 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=64.5
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhcc------CCCChH-HHH--HHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH----
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYD------TSFGDE-EKK--QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV---- 474 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~------~~~~~e-~~~--~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a---- 474 (567)
.....|-.++|...|.+.-++.--+ ....+. +.. +-+-.+...|+|.|.-.-..++.+.|+++|+++
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 3445677788888887766543211 001000 000 011112344788888888889999999999885
Q ss_pred ------hccCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 475 ------LDLDSR----------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 475 ------l~~~p~----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
|.-+|. +.+.|-+.|+-+...|+.+.|+..|..|-.
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 223343 234556678888889999999999988764
No 379
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.80 E-value=6.6 Score=34.35 Aligned_cols=49 Identities=27% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL 498 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~ 498 (567)
....+|...+..|+|.-|++.++.++..+|+|..|...++.+|.+++.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3567888889999999999999999999999999999999999888754
No 380
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=13 Score=36.70 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=30.9
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~ 430 (567)
.-+..|..+...+...=+.++|.+|++.|..|++++-
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 3566777788888888889999999999999998754
No 381
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.48 E-value=4.6 Score=31.01 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
..|..+..+|...=..|+|++|++.|..|++++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45677778888888899999999999999998765
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.37 E-value=30 Score=34.20 Aligned_cols=80 Identities=24% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (567)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a 491 (567)
..|+..|.+|.... ...+..+++.||.+ ..++.+|...|.++-+... ..++++++ +
T Consensus 172 ~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 35666666666543 23457789988877 4589999999999998766 89999999 6
Q ss_pred HHhcC---------------CHHHHHHHHHHHHHhCCCC
Q 008400 492 YIQMA---------------DLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 492 ~~~l~---------------~~~~A~~~~~~al~l~P~n 515 (567)
+...| +...|..++.++....+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 7788888888888776655
No 383
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=20 Score=36.71 Aligned_cols=67 Identities=24% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhcc--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL--DSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~--~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
+.+.+-.||+..+.|+.|-....++--- +.+ .+..+|.+|++..-..+|..|.++|-.|+...|.+.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3445567899999999999888877532 222 367788999999999999999999999999999864
No 384
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.16 E-value=7.9 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred HhhHHHHHHhccCHHHHHHH--HHHHhccCCCC
Q 008400 451 NLNNAACKLKLKDYKQAEKL--CTKVLDLDSRN 481 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~--~~~al~~~p~~ 481 (567)
+..+|.++...|+|++|+.. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 45679999999999999999 44777777754
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.35 E-value=6 Score=41.05 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=47.9
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD---------SRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~---------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
..-+...+.-+|+|..|++..+.+ .++ +.++..+|..|-||+.+++|.+|+..|...|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788899999999987654 222 34578899999999999999999999998874
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.05 E-value=43 Score=34.76 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=65.2
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--ccCHHHHHHHHHHH
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTKV 474 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~~~~~Ai~~~~~a 474 (567)
..+.....++..+|++++|..|.+.|...+..++.... ...+.+++.+|.. .-+|.+|.+.++..
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34567788889999999999999999998865332110 2234455555544 45677777776655
Q ss_pred hccCC------------------------------CC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 475 LDLDS------------------------------RN--------VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 475 l~~~p------------------------------~~--------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+...- .. ..-++.-|.--...|+|+.|..-+-+++++
T Consensus 196 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 196 LKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43210 00 112334444445678999999999888876
No 387
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=72.61 E-value=31 Score=35.51 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=51.8
Q ss_pred HhhHHHHHHh---ccCHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCH
Q 008400 451 NLNNAACKLK---LKDYKQAEKLCTKVL-DLDSRNVKALYRRAQAYIQM---------ADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 451 ~~nla~~~~k---~~~~~~Ai~~~~~al-~~~p~~~ka~~~~a~a~~~l---------~~~~~A~~~~~~al~l~P~n~ 516 (567)
....|.+..+ .|+.++|+..+..++ ..++.++..|...|++|-.+ ...++|+.+|.++.+++|+..
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 3445666666 899999999999954 45567788899889887654 347899999999999997643
No 388
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.05 E-value=39 Score=29.20 Aligned_cols=61 Identities=21% Similarity=0.156 Sum_probs=39.5
Q ss_pred HhhHHHHHHhcc-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 451 NLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 451 ~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
|.++|.-++-.. +-++--+.++....-+..++..++.+|.||.++|+..+|.+.+++|-+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 666776555444 3333334444444455677999999999999999999999999998764
No 389
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=71.52 E-value=13 Score=35.69 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=72.4
Q ss_pred hHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC-----
Q 008400 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----- 481 (567)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----- 481 (567)
..++..++--.|+..|...+.--+.+-..--.... -...+|.-...|+ .--....|.+.++.||-.....
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~----~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~ 77 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAA----CLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSK 77 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhh----hHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcce
Confidence 34555566666777777666544433221000000 0112233334443 2335677888888887654321
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400 482 -VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (567)
Q Consensus 482 -~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 536 (567)
.-+.++++.+|+.+.+|+-|..+|.+|+++--++ ..-..-.++..++....+++
T Consensus 78 IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d-~L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 78 IGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD-TLPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred eeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHhHhhHhh
Confidence 2467899999999999999999999999985444 23334445555555444433
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.09 E-value=29 Score=35.11 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=53.5
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400 469 KLCTKVLDLDSRNVKALYRRAQAYIQMAD------------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (567)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~------------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 536 (567)
..+++.++-+|.++.+|..+....-.+-. .+..+..|++||+.+|++..+...+-++..++-. ..+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~-~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD-SEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHH
Confidence 45788889999999999998876655543 4677889999999999996665555444333321 2233
Q ss_pred HHHHHHhhHhh
Q 008400 537 AKFYGNMFAKM 547 (567)
Q Consensus 537 ~~~~~~~f~~~ 547 (567)
.+.++++....
T Consensus 85 ~~~we~~l~~~ 95 (321)
T PF08424_consen 85 AKKWEELLFKN 95 (321)
T ss_pred HHHHHHHHHHC
Confidence 44566665543
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.80 E-value=6.4 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=24.1
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
.+++|.+|+.+|+++.|....++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36899999999999999999999995
No 392
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=56 Score=32.86 Aligned_cols=118 Identities=22% Similarity=0.200 Sum_probs=79.5
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
.--...|-.+....+|.-|..+|-+|.+-+..... .......++ |.-++-+.+.+-+--.++-..+.+++++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~----~v~A~~sLK---YMlLcKIMln~~ddv~~lls~K~~l~y~g 282 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----DVKALTSLK---YMLLCKIMLNLPDDVAALLSAKLALKYAG 282 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCC----cHHHHHHHH---HHHHHHHHhcCHHHHHHHHhhHHHHhccC
Confidence 33345666666678899999998888865443222 123333333 54555555555555567777788899888
Q ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 480 RNVKALYRRAQAYIQ--MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 480 ~~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
....|+-..|.++.+ +.+|+.|+..|+.=|.-|| -++..+..+..
T Consensus 283 ~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 283 RDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYD 329 (411)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence 889999999999876 5689999999998887554 35555554433
No 393
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.54 E-value=62 Score=28.57 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=41.2
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~ 499 (567)
-.--+..+...|+|.+|+..++.+.+-.+..+-+--.++.|+..+++.+
T Consensus 47 d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 47 DMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred chhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3456778899999999999999999887777777777889999999864
No 394
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=70.54 E-value=22 Score=41.90 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=84.9
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..+....+.|......+.|.+|.+ ..+++.++.+-. ...+.....+|..+|..+.+++++++|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 456777888888888889998888 777776654321 223455667889999999999999999999988854
Q ss_pred c-------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 477 L-------D-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 477 ~-------~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+ + |+...+|-+++.......+...|...+.+++.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 4 2 345788999999999999999999999999876
No 395
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.47 E-value=35 Score=36.39 Aligned_cols=65 Identities=25% Similarity=0.149 Sum_probs=55.1
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhcc---CCC----CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCC
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDL---DSR----NVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~---~p~----~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~P~n 515 (567)
++-+|.|...+|+...|..+++.+++. ..+ -|-|+|-+|..|..++. ..+|.+++.+|.....++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 567899999999999999999988732 111 27899999999999999 999999999999877554
No 396
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=70.39 E-value=1.2e+02 Score=33.31 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=67.4
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+..-|..|-..|+.+.|...|++|++..-.. -+.+..+|++-|..-++..+++.|++...+|... |.+
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~-----------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKT-----------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN 457 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence 3455666667888888888888888652110 1224456777777777777788887777777654 322
Q ss_pred -------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400 482 -------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (567)
Q Consensus 482 -------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 525 (567)
.+.|...+.....+|-++...+.|++.+.|.-..+.+.-.++..
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf 520 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF 520 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23344444444555666666666666666655554444444433
No 397
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.65 E-value=52 Score=35.52 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=57.4
Q ss_pred HHHHhhHHHHHHhccC-HHHHHHHHHHHhccCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400 448 VACNLNNAACKLKLKD-YKQAEKLCTKVLDLDSRNVKALYRR------AQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~-~~~Ai~~~~~al~~~p~~~ka~~~~------a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 520 (567)
..++.|++.+....+. +..+...+..+....|.|...+.-+ ++.+..+++..+|...+.++..+.|.+..+..
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 3457888877766665 4455555666899999987766655 88888999999999999999999999965544
Q ss_pred HH
Q 008400 521 EY 522 (567)
Q Consensus 521 ~l 522 (567)
.+
T Consensus 181 ~~ 182 (620)
T COG3914 181 AL 182 (620)
T ss_pred HH
Confidence 44
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.58 E-value=61 Score=31.51 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=44.9
Q ss_pred hccCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+..+.++|+..+.++|++.+.. .||+-.+-++++.+++|++-...|++.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5568999999999999998764 68999999999999999999888887764
No 399
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.28 E-value=78 Score=32.71 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=58.4
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 532 (567)
++.-++.-+.+...+|+.+|+.--+|+-|.-++.+... +..-+..++++|++||.|-.++...+-+.......
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 34467777888888999999999999999999887654 67888999999999999987777777665555444
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=20 Score=38.36 Aligned_cols=116 Identities=22% Similarity=0.153 Sum_probs=79.7
Q ss_pred hhhhhHHHh---cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc--
Q 008400 403 KEQGNTLFK---AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-- 477 (567)
Q Consensus 403 ~~~G~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-- 477 (567)
.+.|..+|+ ...|++|.+.|.-|....+.+.... .-.-....+..++.+|.+...+|+.+.|.....++|-.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~---lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLI---LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceee---eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 455666664 5668899999998887654322100 00001334555778999999999988887777776531
Q ss_pred ---C----------------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q 008400 478 ---D----------------SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NRDVKLE 521 (567)
Q Consensus 478 ---~----------------p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~ 521 (567)
. |.| -.++|+.-+.+...|=+.-|.++++..++++|. |+-+...
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~ 382 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILY 382 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHH
Confidence 1 222 357778888888899999999999999999999 7644333
No 401
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=65.95 E-value=63 Score=32.46 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=55.6
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
-+|+|.+..+..-...++...+..+.- -...--.+--+|-.+.++|+.++|...|++|+.+.++..+......+
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 479999888888888888877666553 12233455578899999999999999999999999887654444433
No 402
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=65.45 E-value=74 Score=32.84 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=41.7
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--ccCHHHHHHHHH
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCT 472 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~~~~~Ai~~~~ 472 (567)
.....++..+|++++|..|.+.|..++....... . .-...++.+++.||.. .=+|++|.+.++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~-----~-----~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAV-----N-----HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChh-----h-----hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4455677789999999999999999987633211 1 1223345556666554 456777777776
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.30 E-value=16 Score=21.97 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (567)
Q Consensus 496 ~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 524 (567)
++++.|...|+++++..|.+..++..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35667777777777777776666555544
No 404
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.66 E-value=24 Score=32.77 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN----RDVKLEYKTLKEK 528 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n----~~~~~~l~~~~~~ 528 (567)
.+..++.+|.-|. ..+-++|+..|.++|++.+.+ +++..-|..+...
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3555555554333 555666666666666664333 3444444444333
No 405
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=63.61 E-value=62 Score=33.84 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=63.3
Q ss_pred hhhhhhHHHhcCcHHHH-----HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 402 KKEQGNTLFKAGKYARA-----SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A-----~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
.++.+..-.+.++. +| +++|++-+..++ ++....++-....+..+-.+.+.- +-..|+..|..||+
T Consensus 270 mkEW~~ae~qaKnP-KAekqalnqhFQ~~v~sLE-------ee~a~erqqlvetH~~RV~AmlNd-rrR~Ale~ylaALq 340 (615)
T KOG3540|consen 270 MKEWEEAETQAKNP-KAEKQALNQHFQKTVSSLE-------EEAARERQQLVETHEARVEAMLND-RRRDALENYLAALQ 340 (615)
T ss_pred HHHHHHHHhcccCc-hhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 34444444455552 23 355666665543 222223333344454444444333 34679999999999
Q ss_pred cCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCH
Q 008400 477 LDSRNVKALYRRAQAYIQM--ADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l--~~~~~A~~~~~~al~l~P~n~ 516 (567)
.+|..+.--++.-+.|.+. ++-.--+..|+.++..||.-.
T Consensus 341 a~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 341 ADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 9999886655554555443 444567888999999999863
No 406
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=62.30 E-value=59 Score=34.05 Aligned_cols=99 Identities=16% Similarity=0.004 Sum_probs=70.7
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (567)
+-.+|-.+-+++++++|-..|.+..+....... .++..++.++-...+-+++.+.-.......-+..|+.
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f----------~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s 78 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPF----------LLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS 78 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchH----------HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc
Confidence 346788899999999999999998876544332 2233445555555555666666555555556667777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+...+-.|...++.++|++|+..+..-..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888889999999999999988765443
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.75 E-value=34 Score=33.62 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (567)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 531 (567)
.+.+...+.+|+..|.+.+|+...++++.++|-+......+-.+...+++
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 35667789999999999999999999999999998888877776666654
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.55 E-value=38 Score=31.27 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 463 ~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
.....++...+.+...| ++..+.+++.++..+|+.++|.....++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34555666677777767 58899999999999999999999999999999944
No 409
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.78 E-value=31 Score=26.36 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhCCCC
Q 008400 501 AEFDIKKALEIDPDN 515 (567)
Q Consensus 501 A~~~~~~al~l~P~n 515 (567)
|++.|.++++.+|+.
T Consensus 34 a~e~l~~~~~~~~~~ 48 (77)
T smart00745 34 AIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHhccCCCH
Confidence 334444555556543
No 410
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.73 E-value=37 Score=26.23 Aligned_cols=16 Identities=13% Similarity=-0.052 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhCCCCH
Q 008400 501 AEFDIKKALEIDPDNR 516 (567)
Q Consensus 501 A~~~~~~al~l~P~n~ 516 (567)
|+..|..+++..|+..
T Consensus 32 aie~l~~~lk~e~d~~ 47 (77)
T cd02683 32 GIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHhhCCCHH
Confidence 3344555556676553
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.23 E-value=30 Score=33.29 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh-ccCHHHHHHHHHHHhc
Q 008400 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (567)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~ 476 (567)
-+.|.+.|++|+.+....... .++++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~-------~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPP-------THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-------TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCC-------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 377899999999987663222 136788889999987765 8999999999988854
No 412
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=58.44 E-value=1.7e+02 Score=35.61 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=76.1
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHH----HHhh-----------------
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA----CNLN----------------- 453 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~----~~~n----------------- 453 (567)
+....+..|-.|+.++..|+|.+|++.|..|+..+....++ -+....++.+.+. .|..
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~-lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDY-LWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcH-hhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 44567888999999999999999999999999886543322 0111111111000 0000
Q ss_pred ----------------------------------HHHHHHhccCHHHHHHHHHHHhcc----CCC--CHHHHHHHHHHHH
Q 008400 454 ----------------------------------NAACKLKLKDYKQAEKLCTKVLDL----DSR--NVKALYRRAQAYI 493 (567)
Q Consensus 454 ----------------------------------la~~~~k~~~~~~Ai~~~~~al~~----~p~--~~ka~~~~a~a~~ 493 (567)
...-..-...+++|+.+|+++... .|. ...+..|.++.+.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 000111112478899999998632 222 2578888888888
Q ss_pred hcC--------------------CHHHHHHHHHHHHHhCCC
Q 008400 494 QMA--------------------DLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 494 ~l~--------------------~~~~A~~~~~~al~l~P~ 514 (567)
... .-.++..++.+|+.+...
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence 888 778888888888876654
No 413
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.34 E-value=36 Score=36.08 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=15.9
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKV 474 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~a 474 (567)
|-.+|...+++|+++-|..++.++
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Confidence 556666666667777666666665
No 414
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.88 E-value=46 Score=37.43 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.8
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
.++.++..|+.+|++|+|++|...|-+++..++.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 4567789999999999999999999999987653
No 415
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.84 E-value=59 Score=37.86 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=51.7
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA-------LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka-------~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 520 (567)
|+--|.+|..+++|++-++++..|++..|+++.. -||+=.+.... -..|....--++.+.|.+...+.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchH
Confidence 7788999999999999999999999999998643 34444443332 24677788888899998754433
No 416
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=55.65 E-value=38 Score=37.28 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=13.3
Q ss_pred chHHHHHHhcccccccEEE
Q 008400 92 VIKGWDIGIKTMKKGENAV 110 (567)
Q Consensus 92 ~i~gl~~~l~~m~~Ge~~~ 110 (567)
.-+.++.+|-+|.-|+...
T Consensus 164 ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHL 182 (1189)
T ss_pred ecccHHHHHhhhcCCcEEE
Confidence 3456778888888777654
No 417
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=55.48 E-value=39 Score=25.20 Aligned_cols=20 Identities=15% Similarity=-0.052 Sum_probs=9.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008400 490 QAYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 490 ~a~~~l~~~~~A~~~~~~al 509 (567)
.-+-..|+|++|+..|..|+
T Consensus 13 v~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 13 VEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33334445555554444444
No 418
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.36 E-value=2e+02 Score=33.52 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=69.8
Q ss_pred hhhhHHHhcCcHHHHHHHHHH------HHHhhhccCCCChHHHH-HHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 404 EQGNTLFKAGKYARASKRYEK------AVKYIEYDTSFGDEEKK-QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~------al~~~~~~~~~~~e~~~-~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
+.|+.....+-|++|...|++ |+..+-.+...-+-..+ ..+--...+|..+|.+++..+...+|++.|-+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 345666667777888777754 44433222111000000 011113456889999999999999999999665
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
+++..|...-.+....|.|++-+.++..|.+..
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 456788888888999999999999998887653
No 419
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=55.19 E-value=48 Score=25.70 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400 491 AYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550 (567)
Q Consensus 491 a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~ 550 (567)
.+..+..++-|+.++.-.|.-.|.|..+...++...+++++. ++.|.+.|.-|...
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l----~~~Ye~~yGPLt~~ 59 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQL----KKEYEKRYGPLTNF 59 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH----HHHHHHHhCCCcCC
Confidence 455666778899999999999999999999888876665544 45777777765443
No 420
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.10 E-value=1e+02 Score=28.03 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008400 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIK 506 (567)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (567)
+.+.+..|.+....|+-..|+.+++.+-.-.|. .--|-+|-|.++...|-|+.-..-.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srve 156 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE 156 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhh
Confidence 445677888899999999999999998664332 12455677778888888887665444
No 421
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.78 E-value=1.3e+02 Score=33.34 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=42.2
Q ss_pred HHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc----------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008400 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDL----------------------DSRNVKALYRRAQAYIQMADLDLAEF 503 (567)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~----------------------~p~~~ka~~~~a~a~~~l~~~~~A~~ 503 (567)
.+..++.|+|..+..+..|++|.++|.+.-.. -|.+.+.+=.+|..+...|--++|..
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 44556778888888888888888888764221 25555566667777777777777776
Q ss_pred HHHH
Q 008400 504 DIKK 507 (567)
Q Consensus 504 ~~~~ 507 (567)
+|-+
T Consensus 874 a~Lr 877 (1189)
T KOG2041|consen 874 AYLR 877 (1189)
T ss_pred HHHh
Confidence 6654
No 422
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.46 E-value=90 Score=33.44 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=64.4
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (567)
...+..+...|+.+.|+..++.++. ...+++...+++.+|.|+.-+.+|..|-.++...... .++.
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de-sdWS 336 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE-SDWS 336 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-hhhh
Confidence 4455566666777777777776664 3456778888999999999999999999999888775 4566
Q ss_pred HHHHHH--HHHHH--------hcCCHHHHHHHHHHHH
Q 008400 483 KALYRR--AQAYI--------QMADLDLAEFDIKKAL 509 (567)
Q Consensus 483 ka~~~~--a~a~~--------~l~~~~~A~~~~~~al 509 (567)
+|+|.. |.||+ ..++-+.|...++.+.
T Consensus 337 ~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 337 HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 777654 34442 2345555555555443
No 423
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.27 E-value=1.1e+02 Score=32.54 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=65.8
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 529 (567)
|+..+-..+-....+.-....|+++|.+. .+--||+.+++||... .-++--...++..+.+=++...-.+|.......
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 34444455556677888899999999984 4568999999999998 556666677777777777776666666665554
Q ss_pred HHHHHHHHHHHHHhhHhhh
Q 008400 530 KEYNKKEAKFYGNMFAKMK 548 (567)
Q Consensus 530 ~~~~~~e~~~~~~~f~~~~ 548 (567)
+... ....|+++..++-
T Consensus 146 k~sk--~a~~f~Ka~yrfI 162 (711)
T COG1747 146 KKSK--AAEFFGKALYRFI 162 (711)
T ss_pred chhh--HHHHHHHHHHHhc
Confidence 4333 3446666665543
No 424
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=54.22 E-value=28 Score=22.10 Aligned_cols=30 Identities=27% Similarity=0.134 Sum_probs=19.4
Q ss_pred HHHHHHHH--HHHHhcC-----CHHHHHHHHHHHHHh
Q 008400 482 VKALYRRA--QAYIQMA-----DLDLAEFDIKKALEI 511 (567)
Q Consensus 482 ~ka~~~~a--~a~~~l~-----~~~~A~~~~~~al~l 511 (567)
+.|.+++| .+|..-. ++++|..+|++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35677777 4444432 467888888887654
No 425
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=54.13 E-value=73 Score=33.32 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=82.1
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC----------C---CChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHH
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------S---FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~---~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai 468 (567)
....|...+..++|..|+..+.+||+...... . ...++ .+.......++..+ +-..=+...++
T Consensus 34 ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~-~~~~~s~~~~~~a~---fg~~le~a~Cl 109 (471)
T KOG4459|consen 34 AYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEP-EAGSASFGGLYLAI---FGHLLERAACL 109 (471)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCc-hhcccccchhHHHH---HHHHHHHHHHH
Confidence 45677888889999999999999998632111 0 00000 00000000000000 00011223344
Q ss_pred HHHHHHhccCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH----HH
Q 008400 469 KLCTKVLDLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY----NK 534 (567)
Q Consensus 469 ~~~~~al~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~----~~ 534 (567)
.-|...+.-.+.. -..|..+=.||.+.|++.+|++.-...+--+|++.+++..+..-+.++... ..
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~D 189 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELTD 189 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCcccccc
Confidence 5555555444433 256777888999999999999999999999999999988887766444222 12
Q ss_pred HHHHHHHHhhHh
Q 008400 535 KEAKFYGNMFAK 546 (567)
Q Consensus 535 ~e~~~~~~~f~~ 546 (567)
-|++.+..+|-+
T Consensus 190 lE~~~~~~~Fir 201 (471)
T KOG4459|consen 190 LERREHEQWFIR 201 (471)
T ss_pred cccchHHHHHHH
Confidence 334455555544
No 426
>PF15469 Sec5: Exocyst complex component Sec5
Probab=53.94 E-value=56 Score=29.82 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhcc
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYD 432 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~ 432 (567)
.+.++|+|+.|+..|.+|..++...
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999887643
No 427
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=53.22 E-value=45 Score=28.28 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=58.6
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHh
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR---------------NVKALYRRAQAYIQMADLDLAEFDIKKA----LEI 511 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~---------------~~ka~~~~a~a~~~l~~~~~A~~~~~~a----l~l 511 (567)
+.++|...++.+++-.|+-.|++|+.+-.+ .+-...|+|.-+...|+-+-.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999865211 1345679999999999999999999655 445
Q ss_pred CCC--CH---HHHHHHHHHHHHHHHH
Q 008400 512 DPD--NR---DVKLEYKTLKEKMKEY 532 (567)
Q Consensus 512 ~P~--n~---~~~~~l~~~~~~~~~~ 532 (567)
-|. +. .....++-|+..+-+.
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F 109 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDF 109 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHH
Confidence 554 22 2344455555555443
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=1.8e+02 Score=28.75 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=42.7
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (567)
.+.+|.+.+.+++.+|+..|.+.+..- .+. + +..........++++..|...|+|..--+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg---~s~--d--ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKG---VSK--D--EKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCC---CCh--h--hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 467888999999999999999988541 111 1 111122333467899999999988765444433
No 429
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=11 Score=37.87 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=55.1
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka 484 (567)
.+...++.+.+..|+..-..+++..+ -...+|+.++..|+.+.++++|++++..+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~---------------s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDER---------------SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccccCh---------------hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 44556666777777666555555222 233458899999999999999999999999999998665
Q ss_pred HHHHHHHHHhcCCH
Q 008400 485 LYRRAQAYIQMADL 498 (567)
Q Consensus 485 ~~~~a~a~~~l~~~ 498 (567)
.-.+..+-....++
T Consensus 346 ~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 346 EEELENVRQKKKQY 359 (372)
T ss_pred HHHHHHhhhHHHHH
Confidence 55554444444333
No 430
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.19 E-value=57 Score=35.35 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
.+.+++++++.|.+...+ .++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 645 elal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 345677888887765433 355677888899999999999999999888765
No 431
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.07 E-value=1.8e+02 Score=38.65 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=71.6
Q ss_pred HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHHhCCCCH
Q 008400 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----AD----LDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l----~~----~~~A~~~~~~al~l~P~n~ 516 (567)
......+.-.|....+++++++|-..|..|++++..-.|+|+..|.-+..+ .+ -..|+.+|-+|....-+.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s- 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSS- 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccch-
Confidence 445566777899999999999999999999999999999999999865543 22 357888888888876333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400 517 DVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (567)
Q Consensus 517 ~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~ 546 (567)
.++..+.++...+.-.+... ...++|++
T Consensus 2888 kaRk~iakvLwLls~dda~~--~l~~~~~k 2915 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLSFDDSLG--TLGDVFDK 2915 (3550)
T ss_pred hhHHHHHHHHHHHHhccccc--hHHHHHHH
Confidence 46777777766654443322 44445544
No 432
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=51.91 E-value=34 Score=21.19 Aligned_cols=29 Identities=38% Similarity=0.293 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 008400 483 KALYRRAQAYIQM----ADLDLAEFDIKKALEI 511 (567)
Q Consensus 483 ka~~~~a~a~~~l----~~~~~A~~~~~~al~l 511 (567)
.+++++|..|..- .+..+|..+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4566666666542 3667777777766543
No 433
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.86 E-value=1.2e+02 Score=34.52 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=69.9
Q ss_pred HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (567)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (567)
|+..--+|.....+++++.|++.-+.++..++.+... .++.++++.|.++.-.|++.+|+.+...+.++.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3333445667778899999999999999998876644 367789999999999999999999999998763
Q ss_pred C----CC--HHHHHHHHHHHHhcCC
Q 008400 479 S----RN--VKALYRRAQAYIQMAD 497 (567)
Q Consensus 479 p----~~--~ka~~~~a~a~~~l~~ 497 (567)
. .. .-+.+..+.++...|+
T Consensus 528 ~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 528 RQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhhH
Confidence 2 22 3456677888889993
No 434
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.74 E-value=1.8e+02 Score=27.61 Aligned_cols=63 Identities=13% Similarity=-0.035 Sum_probs=49.3
Q ss_pred hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (567)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (567)
....+.+.+..++|+..-..-++..|.+... ...+=..+.-.|+|++|...|+-+-++.|+..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3457888999999999999888887776644 22333445568999999999999999999874
No 435
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.61 E-value=1.2e+02 Score=35.36 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=70.6
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (567)
....-|+.+|..+.|+.|.-.|...-. +..+|.....+|+|+.|....++|-....-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 345678889999999888887775432 667888888999999999988887332100
Q ss_pred -------CHHHHHHHH------------------HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400 481 -------NVKALYRRA------------------QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (567)
Q Consensus 481 -------~~ka~~~~a------------------~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 528 (567)
-.+--||+| .-|...|-|++-+..++.+|-++-.+-....+|+.+..+
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 001123333 336667888888888888888776665555555555443
No 436
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.16 E-value=35 Score=35.77 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred HHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~ 516 (567)
..+.++++|..|.....-.|.-+-..+..+---|-...+++-+++|....++.+.++|...
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 4566889999999998888876666666665566667778889999999999999887643
No 437
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=49.10 E-value=1.5e+02 Score=31.22 Aligned_cols=102 Identities=13% Similarity=0.011 Sum_probs=65.9
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccC--------------HHH
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------YKQ 466 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~--------------~~~ 466 (567)
..+..|..+|--++|+.|...|.-+.+-...+... .....++--.|.|.+..+. ++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 45678899999999999999999888755433211 2223334444555555442 344
Q ss_pred HHHHHHHH----hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 467 AEKLCTKV----LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 467 Ai~~~~~a----l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
|...|.++ .........+.+..+.++..++.|.+|...+-++...
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 55555552 1122234577788888888999998888877777665
No 438
>PF12854 PPR_1: PPR repeat
Probab=48.50 E-value=46 Score=20.87 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKK 507 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (567)
|.-.|-.+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666777777777777777654
No 439
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.83 E-value=2.5e+02 Score=28.26 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
+-..+|.|..|+|+..+|++.+....+--|-. ...+-|+-.+++.+.-|.+....+-+.-.
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567999999999999999988776655521 23344555566666555554444444333
No 440
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.59 E-value=2.5e+02 Score=27.63 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=71.4
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC-H
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-V 482 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-~ 482 (567)
+.+..++-..+|..|+...+++++.+..+....+ ......+++..++.---++...+++|.+++...-+-.+.-.+- +
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee-~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEE-PAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 3345566789999999999999998855432211 1112233444433333457778999999998887766642222 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (567)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~ 517 (567)
|.+-.--..|.+.++.....+.-..=| .+|+|..
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~ 152 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWL-QDPSNQS 152 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCC
Confidence 666666667888888876665544333 3777763
No 441
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=45.33 E-value=60 Score=24.67 Aligned_cols=14 Identities=29% Similarity=0.107 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHH
Q 008400 496 ADLDLAEFDIKKAL 509 (567)
Q Consensus 496 ~~~~~A~~~~~~al 509 (567)
|+|++|+.+|..|+
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 45554444444444
No 442
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=44.89 E-value=2.6e+02 Score=25.89 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM--ADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l--~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
-+...+.-+-.+.+.. +-..|+..|..+|..+|.|+.-.++.-+.|..- .+---.+..|+.++..+|.. +.....
T Consensus 96 qL~~~H~qRV~a~Lne-rkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~--A~~~k~ 172 (193)
T PF12925_consen 96 QLVETHQQRVQAMLNE-RKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEE--AAQIKP 172 (193)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHH--HHHhHH
Confidence 3444455555554443 447788999999999988877666555555443 34446778888888888865 333333
Q ss_pred HHHHHHH
Q 008400 524 TLKEKMK 530 (567)
Q Consensus 524 ~~~~~~~ 530 (567)
.+..++.
T Consensus 173 ~vl~hL~ 179 (193)
T PF12925_consen 173 QVLTHLR 179 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3434443
No 443
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=1.3e+02 Score=31.25 Aligned_cols=100 Identities=18% Similarity=0.016 Sum_probs=69.9
Q ss_pred CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc--CHHHHHHHHHHHhccCCCCHHHHHHHH-
Q 008400 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYRRA- 489 (567)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~~~~Ai~~~~~al~~~p~~~ka~~~~a- 489 (567)
.-++.-+..-..+++..+.... +++-+.-+..+.. +|..=++.|+++|+.||.|-.+|..|-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~---------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf 153 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYG---------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF 153 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHH---------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH
Confidence 3455556666666666654332 3667777777665 589999999999999999988765443
Q ss_pred HHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400 490 QAYIQMAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (567)
Q Consensus 490 ~a~~~l~~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 527 (567)
.+=..... ..+-+++..+++.-++.|-.++.....+..
T Consensus 154 V~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 154 VVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 33333333 567788889999989999877777665544
No 444
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.68 E-value=46 Score=30.94 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHH
Q 008400 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (567)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai 468 (567)
.+|-+.+-.+|+..|.+++.+...+..+. ..++..+|..|+++++++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhh
Confidence 45557899999999999999987664432 345778999999999998874
No 445
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=44.12 E-value=46 Score=28.23 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.5
Q ss_pred hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
.+++...-......|..+..+|++.+|+.+|-+|+..++.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4566666778889999999999999999999999998764
No 446
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=43.27 E-value=84 Score=34.91 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHHHhccCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008400 456 ACKLKLKDYKQAEKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDI 505 (567)
Q Consensus 456 ~~~~k~~~~~~Ai~~~~~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~ 505 (567)
..|-+.|+|..|.+...+.-. |.. ...|...|.-+-..|+|.+|...|
T Consensus 799 ~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 456677777777776665543 322 334445555555666665554433
No 447
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.93 E-value=2e+02 Score=29.11 Aligned_cols=131 Identities=15% Similarity=0.042 Sum_probs=81.6
Q ss_pred hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC---CC-------------ChH--HHHHHHHHHHHHHhhHHHHHHhccC
Q 008400 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SF-------------GDE--EKKQAKALKVACNLNNAACKLKLKD 463 (567)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~-------------~~e--~~~~~~~~~~~~~~nla~~~~k~~~ 463 (567)
-.+.|..++..++|.+....+..|-....... .. ++. +-.-..-.+..+++.+|.-|..+++
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD 140 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLND 140 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcc
Confidence 34678888888998887777665544322110 00 000 0000111234456678999999999
Q ss_pred HHHHHHHHHHHhcc------------------------CCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008400 464 YKQAEKLCTKVLDL------------------------DSRNV-----------KALYRRAQAYIQMADLDLAEFDIKKA 508 (567)
Q Consensus 464 ~~~Ai~~~~~al~~------------------------~p~~~-----------ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (567)
++.|+--+++|+.. +|+-. ..|.+.+.-|-.-.++-.+-.+|.++
T Consensus 141 ~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~ 220 (449)
T COG3014 141 SAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSG 220 (449)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 98888888777653 12211 23445666677777777888889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400 509 LEIDPDNRDVKLEYKTLKEKMKEYN 533 (567)
Q Consensus 509 l~l~P~n~~~~~~l~~~~~~~~~~~ 533 (567)
|-..|++ ++......+.....-+.
T Consensus 221 lf~a~n~-dv~kg~~~~~e~~gi~q 244 (449)
T COG3014 221 LFYALNG-DVNKGLGYLNEAYGISQ 244 (449)
T ss_pred HhcccCc-cHhHHHHHHHHHhccCc
Confidence 9998888 66666666666655443
No 448
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.29 E-value=2.7e+02 Score=25.45 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=65.1
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH-hccCC
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV-LDLDS 479 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a-l~~~p 479 (567)
.....|..+..+|+-..|+..|..+-.-.+... ..+-.+.+.-|....-.+.|+....-.+.. -.-+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~-----------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ-----------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc-----------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence 345567778888999999999998765432211 112223444455566678888766654432 12233
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
-...|---+|.+-++-|+|.+|.++|.....
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3345555678888999999999999998876
No 449
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=42.27 E-value=1.5e+02 Score=22.51 Aligned_cols=19 Identities=16% Similarity=-0.062 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008400 491 AYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 491 a~~~l~~~~~A~~~~~~al 509 (567)
-.-..|+|++|+..|..|+
T Consensus 15 ~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 15 EEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3334445444444444443
No 450
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=42.10 E-value=91 Score=30.75 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
..+++..++.++...++++.++..+++.+.++|-+..++..+-........+. .....|+++-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~-~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS-AAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch-HHHHHHHHHHH
Confidence 46899999999999999999999999999999999877766655544333222 22334444444
No 451
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.00 E-value=2.3e+02 Score=30.18 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
.+++|+.+.|.+.++ .-++...|-++|.+.+..|+++-|..+|.++-.
T Consensus 328 Al~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 328 ALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 356788888877543 234678999999999999999999999998753
No 452
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.00 E-value=6.5e+02 Score=32.52 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=60.2
Q ss_pred HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
+.....+|++.|....+.|+++.|-.+.-.|.+.. -++++..+|+.+-..|+-..|+..++..++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34567789999999999999999999999998876 57899999999999999999999999999664
No 453
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.81 E-value=2.6e+02 Score=30.69 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 008400 491 AYIQMADLDLAEFDIKKA 508 (567)
Q Consensus 491 a~~~l~~~~~A~~~~~~a 508 (567)
||..+|+++++.+.+..-
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 455556666665555443
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.72 E-value=3.9e+02 Score=27.02 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=27.8
Q ss_pred CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400 480 RNVKAL--YRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 480 ~~~ka~--~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 514 (567)
.|+..| -|+|.|..++|+..+|++.++...+--|-
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 344444 37799999999999999999988876664
No 455
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.72 E-value=4e+02 Score=28.72 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=44.4
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhCCCCH
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--------------------MADLDLAEFDIKKALEIDPDNR 516 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~--------------------l~~~~~A~~~~~~al~l~P~n~ 516 (567)
...+|++|++.....|+.|..+.+|--++-.-+.. -.++.+|+.+|++.+..+..|-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 35689999999999999999988876655554444 4567888889998888876663
No 456
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.54 E-value=2e+02 Score=23.66 Aligned_cols=47 Identities=26% Similarity=0.259 Sum_probs=28.9
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~ 497 (567)
.+..|...+-.|+|..|.+...++-+..+...-.|+--|++-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 45566666677777777777777766544444555555555555543
No 457
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=40.30 E-value=40 Score=19.84 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=15.8
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666665543
No 458
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=40.18 E-value=1.9e+02 Score=31.24 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400 439 EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (567)
Q Consensus 439 ~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~ 518 (567)
+..+.+..-+..|+.+-.-+. .+-++++...|++....-|..+.+|-......++..+|+.-.+.|.++|.--- |-+.
T Consensus 11 ~rie~nP~di~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhH
Confidence 334444445555655544433 33888888888888888888888888888888888888888888888876432 2445
Q ss_pred HHHHH
Q 008400 519 KLEYK 523 (567)
Q Consensus 519 ~~~l~ 523 (567)
+..+-
T Consensus 89 W~lYl 93 (656)
T KOG1914|consen 89 WKLYL 93 (656)
T ss_pred HHHHH
Confidence 55543
No 459
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=38.81 E-value=76 Score=19.27 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHH
Q 008400 468 EKLCTKVLDLDSRNVKALYRRAQAY 492 (567)
Q Consensus 468 i~~~~~al~~~p~~~ka~~~~a~a~ 492 (567)
+..+..+|..+|.|-.++.-|--++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 4455556666666665555444433
No 460
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=38.48 E-value=2.7e+02 Score=32.97 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=15.0
Q ss_pred hhhhHHHhcCcHHHHHHHHHHHHHh
Q 008400 404 EQGNTLFKAGKYARASKRYEKAVKY 428 (567)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~ 428 (567)
+.|..|-..|+.++|+..|..+...
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDW 981 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccH
Confidence 3344444567777777777665543
No 461
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=37.66 E-value=4.3e+02 Score=26.88 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=54.1
Q ss_pred HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc----cCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
.-++..+-..+...|+..++|.+|+...+..++ +|. .-+..+..-.++|..+.+..+|...+..|-..
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 345666777889999999999999999888764 332 23567778889999999999999998887754
No 462
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.38 E-value=4.3e+02 Score=31.45 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC
Q 008400 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433 (567)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~ 433 (567)
++.|=+...+.++. =-.++++-+.+.=++.|.+||..+....
T Consensus 866 DPkEyLP~L~el~~-m~~~~rkF~ID~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 866 DPKEYLPFLNELKK-METLLRKFKIDDYLKRYEDALSHLSECG 907 (1265)
T ss_pred ChHHHHHHHHHHhh-chhhhhheeHHHHHHHHHHHHHHHHHcC
Confidence 34444444444442 2233444555666777777777765544
No 463
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=37.28 E-value=1.2e+02 Score=29.25 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHHHHHhhHHHHHHh-ccCHHHHHHHHHHHhc
Q 008400 415 YARASKRYEKAVKYIEY-DTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (567)
Q Consensus 415 ~~~A~~~y~~al~~~~~-~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~ 476 (567)
-+.|...|+.|+.+... .... ++++..+.+|.+..|+. +++.++|+...++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt--------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT--------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45889999999987543 2222 36777788899988777 4888888887777754
No 464
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.65 E-value=2.1e+02 Score=29.03 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=68.1
Q ss_pred HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHH-HHHHH-HHHHhhHHHHHHhccCHHHHHH--HH
Q 008400 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQ-AKALK-VACNLNNAACKLKLKDYKQAEK--LC 471 (567)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~-~~~~~-~~~~~nla~~~~k~~~~~~Ai~--~~ 471 (567)
.+...-..-.|-.|+...+++.|.--|++|.+.-........++..+ .+++. ...--|+...... -.++++ +.
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae---~s~~i~n~Y~ 198 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAE---VSEILNNTYS 198 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHH
Confidence 33444555667778888888888888888776543222111111111 11111 0011111111111 111110 00
Q ss_pred HHHhcc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400 472 TKVLDL----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (567)
Q Consensus 472 ~~al~~----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 523 (567)
+-++.. +-.|+-+-|++|.++.-.+++.++...+..++-+.|+...+.+++.
T Consensus 199 ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 199 NYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
Confidence 111222 2346888899999999999999999999999999998655554443
No 465
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.38 E-value=5.4e+02 Score=27.13 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=67.7
Q ss_pred HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH------HHHH
Q 008400 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY------KQAE 468 (567)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~------~~Ai 468 (567)
.+-.+.-+.+.|..++++..|.+|+-..-.|-+++..+.+. -.+.... ...+.+.+--||+.+++. +.-+
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k---lLe~VDN-yallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK---LLELVDN-YALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH---HHHhhcc-hhhhhcchhheehhhcccccCChHHHHH
Confidence 35667888999999999999999999988887776543321 0111111 111223334577776542 2222
Q ss_pred HHHHHHhccC-------------CCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 469 KLCTKVLDLD-------------SRN-VKALY-----RRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 469 ~~~~~al~~~-------------p~~-~ka~~-----~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
..|.+.+... +.. .+|++ ..|...++.|+-++|.++|+.|..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2333332211 122 24444 458888999999999999988864
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.91 E-value=2.3e+02 Score=31.78 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=29.4
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (567)
.++|.+|+...+..-.. ....+.|=..|.-|..+|+|+-|.+.|.++
T Consensus 745 akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 46677777666544221 122344445678888888888888777554
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.39 E-value=2e+02 Score=24.46 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc--CCCCHHHHHHHHH
Q 008400 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQ 490 (567)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~--~p~~~ka~~~~a~ 490 (567)
+.-..-...++++++....+.....+. -|+.+-.-|...-+ .+...+..+... --..+.-|-..|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~----------RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDE----------RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-H----------HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCH----------HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 344444566777777665543221110 14444445555444 677777766553 3456777778899
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008400 491 AYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 491 a~~~l~~~~~A~~~~~~al 509 (567)
.+...|++.+|.+.|++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 468
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=35.30 E-value=1.6e+02 Score=30.32 Aligned_cols=47 Identities=17% Similarity=0.033 Sum_probs=41.8
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (567)
....-+|+..++.++..+|.|....+.+.+.|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34567888889999999999999999999999999999999888853
No 469
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.43 E-value=2.2e+02 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.051 Sum_probs=8.0
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 008400 492 YIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 492 ~~~l~~~~~A~~~~~~al 509 (567)
+-..|+|++|+.+|..|+
T Consensus 16 ~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333444444444444444
No 470
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.95 E-value=78 Score=19.05 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=18.3
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
|..+-.++.+.|+++.|...++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666677777888887777766544
No 471
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.61 E-value=4.1e+02 Score=27.67 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=65.1
Q ss_pred HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
..|.-+.-.|....-+.+|..|.++|..|++.-|..... ..+..+.--+..+.+-+|++.+-.-.|+..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al---------Gf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL---------GFRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh---------hHHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 567777888888888889999999999999887753322 12222222333444556666554444433222
Q ss_pred cCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400 477 LDSRNVKALYRRAQA--YIQMADLDLAEFDIKKALEIDPDNRDV 518 (567)
Q Consensus 477 ~~p~~~ka~~~~a~a--~~~l~~~~~A~~~~~~al~l~P~n~~~ 518 (567)
.....||.+.+| ...+..|..-++.|..-+..+-...-+
T Consensus 316 ---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~Li 356 (493)
T KOG2581|consen 316 ---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLI 356 (493)
T ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHH
Confidence 134556666554 444556666777776666665554333
No 472
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.15 E-value=1.2e+02 Score=30.76 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
++-+.+..+...|+.++..++|..|...|..|..+...
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999988654
No 473
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.10 E-value=1.9e+02 Score=22.09 Aligned_cols=19 Identities=26% Similarity=-0.083 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008400 492 YIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~ 510 (567)
.-..|+|++|..+|..+++
T Consensus 16 ~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 16 KDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3344455555555444443
No 474
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=32.99 E-value=1.1e+02 Score=33.11 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=41.7
Q ss_pred hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
...+|..|+..|.+. .+ +..-+|...|.++++.++|..|+.-|++|+++-.++
T Consensus 568 e~ErYqlaV~mckKc-~i--D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 568 EAERYQLAVEMCKKC-GI--DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred HHHHHHHHHHHHhhc-CC--CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 345677777777765 12 235688899999999999999999999999986554
No 475
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=32.95 E-value=3.3e+02 Score=24.67 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK 548 (567)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~ 548 (567)
|--..+|++.++-|-..-=-..+...++...++||.- .++...+..-+.+.++..++.+..|++++....
T Consensus 94 PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~~A~ 164 (170)
T PLN00122 94 PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEEAAA 164 (170)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666655544433444555556666777653 234444444444444445555667777766543
No 476
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.60 E-value=1.1e+02 Score=26.99 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.4
Q ss_pred ChHHHHHHHhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhc
Q 008400 391 NTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEY 431 (567)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~ 431 (567)
+.+++...-......|..+...| ++.+|+.+|-+||..++.
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 45667777788889999999999 999999999999998764
No 477
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.29 E-value=3.4e+02 Score=29.86 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (567)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n 515 (567)
+...-+.+..+.+....+.-+.-......+++.+|+.+-..++.+.|-++|++.+..+|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 15 CLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 3334445555556555555555555556677777777777777777777777777777775
No 478
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=4.1e+02 Score=26.32 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc----cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 441 ~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (567)
+...-++..+-+.+...+++.+.|.+|+...+-++. +| ++-...+..-.++|....+..++...+..|..+
T Consensus 118 Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 118 EKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 334456777778899999999999999999888764 22 445678888899999999999999988887765
No 479
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.06 E-value=81 Score=18.84 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=16.0
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
|+.+=.+|.+.+++++|.+.+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566667777777776666543
No 480
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.93 E-value=1.1e+02 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (567)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l 522 (567)
.+|..++..|++++|...|-+|+.+.|+-.+....+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 578888888999999999999999988865443333
No 481
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.83 E-value=1.3e+02 Score=31.92 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (567)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 545 (567)
....+|+.-...|+|.=|.+.++++.--+|+|+.++.++..+...+.-+ .|.+.|+++|=
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYq--aE~A~wRn~yL 513 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQ--AESATWRNFYL 513 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhh--hccchhhhhHH
Confidence 3456788888899999999999999999999999999998887776543 46677887773
No 482
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.63 E-value=2.6e+02 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=18.6
Q ss_pred HHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (567)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka 484 (567)
..++.+.|.|++|.+.+++... +|++.+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 4455667777777777777666 6665554
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.20 E-value=84 Score=25.93 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHh
Q 008400 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (567)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~ 428 (567)
.-+.+.+.....+|-..+-.|+|..|.+...++.+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 446678888899999999999999999999999765
No 484
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.75 E-value=1.9e+02 Score=22.20 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 008400 495 MADLDLAEFDIKKALE 510 (567)
Q Consensus 495 l~~~~~A~~~~~~al~ 510 (567)
.++|++|..+|..+++
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3666666666665554
No 485
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=29.90 E-value=7.7e+02 Score=27.00 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=23.4
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008400 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502 (567)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~ 502 (567)
.|++..|...++++.+--|+...+-++.+.....+|+.+.|.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 445555555555555544555555555555555555555555
No 486
>PF13041 PPR_2: PPR repeat family
Probab=29.40 E-value=1.8e+02 Score=19.62 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=17.2
Q ss_pred HhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400 451 NLNNAACKLKLKDYKQAEKLCTKVLDL 477 (567)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (567)
|+-+=.+|.+.|++++|.+.+++..+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 445555666677777777777666553
No 487
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.39 E-value=4.1e+02 Score=23.61 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=68.9
Q ss_pred hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhcc----CCCC------------------h--HHHHHHHHHHHHHHhhHHH
Q 008400 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----TSFG------------------D--EEKKQAKALKVACNLNNAA 456 (567)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~----~~~~------------------~--e~~~~~~~~~~~~~~nla~ 456 (567)
.....+......|+.++|+....+|...+... ..+. + .................+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 34455666677899999999998888775421 0000 0 0000111223334567888
Q ss_pred HHHhccCHHHHHHHHHHHh-ccC------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 457 CKLKLKDYKQAEKLCTKVL-DLD------S-RNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al-~~~------p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
-+++.|+...|.+.++.+- +++ | ........+|..++..|+|++|...+..|+.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8999999999999887762 111 1 1235566889999999999999999999874
No 488
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.18 E-value=1e+02 Score=23.99 Aligned_cols=33 Identities=33% Similarity=0.304 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (567)
Q Consensus 463 ~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (567)
-|+.|..+.+++|..|. .|+.++|+.+|+++++
T Consensus 4 ~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 35666666666666654 3455555555555554
No 489
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.41 E-value=5.9e+02 Score=27.88 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=48.0
Q ss_pred HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (567)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (567)
.|.+...-..+.|+++.+.-.+++++.-.....+.|++.++.....|+.+-|...+.++.++.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 355566667788888888888888887777777888888887777777777777777777664
No 490
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.25 E-value=1.3e+02 Score=26.07 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred CChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (567)
Q Consensus 390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (567)
.+.+++...-....+.|..|+.+|+++++..++..||..++.
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 456677777888899999999999999999999999988654
No 491
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=28.24 E-value=1.7e+02 Score=24.44 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=36.7
Q ss_pred ccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh
Q 008400 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (567)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~ 430 (567)
.+..+...-+..|..+..+|..++..|+.+.|--.|-+.+.+..
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34556777789999999999999999999999999999988763
No 492
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.82 E-value=1.1e+02 Score=19.30 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 008400 497 DLDLAEFDIKKALEIDPD 514 (567)
Q Consensus 497 ~~~~A~~~~~~al~l~P~ 514 (567)
+++.|...|++.+...|+
T Consensus 2 E~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE 19 (32)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 344555555555555444
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.74 E-value=5e+02 Score=24.12 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=63.6
Q ss_pred hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (567)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (567)
.++-..+..+..+|++++|...+++|.+....... .... ..-.++-+.|...+..|-+|...+.-.-.-.-
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~-------~l~~--~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ 100 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR-------LLAG--FPELYFAGFVTTALQEYVEATLLYSILKDGRL 100 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-------HHhh--hHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC
Confidence 34445666777899999999999999876542110 0000 11244567787888899999888876654332
Q ss_pred CC------HHHHH------------HHHHHHHhcCCHHHHHHHHHHHH
Q 008400 480 RN------VKALY------------RRAQAYIQMADLDLAEFDIKKAL 509 (567)
Q Consensus 480 ~~------~ka~~------------~~a~a~~~l~~~~~A~~~~~~al 509 (567)
.. +.+.| |...-.+..++++.|...++-.-
T Consensus 101 ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 101 PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred CCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22 12223 34445777899999988775443
No 494
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=27.74 E-value=3.7e+02 Score=24.79 Aligned_cols=21 Identities=29% Similarity=-0.001 Sum_probs=10.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 008400 491 AYIQMADLDLAEFDIKKALEI 511 (567)
Q Consensus 491 a~~~l~~~~~A~~~~~~al~l 511 (567)
.+.-+.+.+.|.++--+|-++
T Consensus 177 ~~~~~kDMdka~qfa~kACel 197 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACEL 197 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhc
Confidence 344445555555555555554
No 495
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=27.68 E-value=2.7e+02 Score=24.78 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (567)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (567)
........+|.+++.|+.+.|.+..+-+-.-+......-. --......+.|..++..|+|.+|...+..++.
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP-------L~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP-------LAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE-------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC-------HHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3556678899999999999998887765432211100000 01122256899999999999999999988864
No 496
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.88 E-value=1.5e+02 Score=21.73 Aligned_cols=60 Identities=25% Similarity=0.246 Sum_probs=36.7
Q ss_pred hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHH
Q 008400 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (567)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~ 471 (567)
...|..+|..|+|-+|-+..+..=...+. . ...-++..+...-|..+++.|+...|...+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~------~---~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPG------P---ERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-C------C---HHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCc------c---hHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35678899999999998888765432111 1 122233333445566667788888887653
No 497
>PHA02122 hypothetical protein
Probab=26.44 E-value=1e+02 Score=21.89 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.8
Q ss_pred CCCCEEEEEEEEEEcCCCEEee
Q 008400 54 ENGDEVEVHYTGTLLDGTQFDS 75 (567)
Q Consensus 54 ~~gd~V~v~Y~~~~~~g~~~~~ 75 (567)
..||.|.++|.+.. +|+.|-.
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEEe
Confidence 46999999999886 7877643
No 498
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.39 E-value=1.4e+02 Score=29.77 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=44.8
Q ss_pred HhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhh-HHHHHHhccCHHHHHHHHHHHhccCCCCHHHHH
Q 008400 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN-NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486 (567)
Q Consensus 410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~n-la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~ 486 (567)
.+.+-|.+--..|..++...|.+... |.- -+.-+.-.++++.|...+.++|+++|.+++.|+
T Consensus 118 ~k~k~y~~~~nI~~~~l~khP~nvdl---------------WI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 118 IKKKMYGEMKNIFAECLTKHPLNVDL---------------WIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcee---------------eeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34556777778899999888776543 222 222344568999999999999999999986543
No 499
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.26 E-value=9.9e+02 Score=26.92 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchh
Q 008400 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHE 558 (567)
Q Consensus 490 ~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~~~~ 558 (567)
.++...++|.+|..-++..+++.- .-.....+.++....+.-.+-.+..+.++|+.++.....+..|+
T Consensus 140 ~~l~~kr~y~e~a~~lqai~~ll~-~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~ 207 (793)
T KOG2180|consen 140 NALLSKRSYGEAASPLQAILQLLN-HFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHE 207 (793)
T ss_pred HHHHhhccHHHHHhHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 456777899999999998888763 43455556666666666677777788888888877777776643
No 500
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=25.02 E-value=5.5e+02 Score=23.72 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 008400 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495 (567)
Q Consensus 464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l 495 (567)
..+|++++.++-.++ +..|.|++.-.|+.-
T Consensus 128 ~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE--DGEACFLLSTMYMGG 157 (248)
T ss_pred cHHHHHHHHHhccCC--CchHHHHHHHHHhcc
Confidence 567788887776653 456666666655544
Done!