BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>008401
MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ
SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA
SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH
KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI
VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVL
CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE
SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSD
IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ
AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE
KLFDDSVCLYSISICLYDLDFSCFTPS

High Scoring Gene Products

Symbol, full name Information P value
AT2G45100 protein from Arabidopsis thaliana 5.1e-116
AT3G09360 protein from Arabidopsis thaliana 2.1e-107
Brf1
BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) 		protein from Mus musculus 1.0e-56
BRF1
Uncharacterized protein 		protein from Gallus gallus 4.4e-56
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 1.6e-55
BRF1
TFIIIB B-related factor 		gene from Saccharomyces cerevisiae 1.4e-53
brf1b
BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIBb 		gene_product from Danio rerio 1.4e-52
brf1a
BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIBa 		gene_product from Danio rerio 1.4e-52
BRF1
Uncharacterized protein 		protein from Canis lupus familiaris 1.3e-50
brf1
transcription factor IIIB subunit 		gene from Dictyostelium discoideum 4.4e-46
Brf protein from Drosophila melanogaster 3.9e-45
BRF1
Uncharacterized protein 		protein from Canis lupus familiaris 8.6e-45
brf-1 gene from Caenorhabditis elegans 1.8e-41
G3X7R9
Uncharacterized protein 		protein from Bos taurus 5.8e-41
BRF1 gene_product from Candida albicans 5.8e-40
TDS4
Transcription factor IIIB 70 kDa subunit 		protein from Candida albicans SC5314 5.8e-40
Brf1
BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) 		gene from Rattus norvegicus 1.3e-39
AT1G30455 protein from Arabidopsis thaliana 8.5e-29
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 2.7e-23
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 5.7e-21
BRF1
BRF1 protein 		protein from Homo sapiens 9.3e-21
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 9.3e-21
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 9.3e-21
BRF1
Uncharacterized protein 		protein from Sus scrofa 3.9e-17
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 2.4e-09
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 2.3e-07
GTF2B
Uncharacterized protein 		protein from Gallus gallus 9.4e-07
GTF2B
Uncharacterized protein 		protein from Sus scrofa 1.0e-06
BRF1
Transcription factor IIIB 90 kDa subunit 		protein from Homo sapiens 1.2e-06
LOC786656
Uncharacterized protein 		protein from Bos taurus 1.3e-06
GTF2B
Uncharacterized protein 		protein from Canis lupus familiaris 1.3e-06
GTF2B
Transcription initiation factor IIB 		protein from Homo sapiens 1.3e-06
Gtf2b
general transcription factor IIB 		protein from Mus musculus 1.3e-06
Gtf2b
general transcription factor IIB 		gene from Rattus norvegicus 1.3e-06
GTF2B
Transcription initiation factor IIB 		protein from Bos taurus 2.2e-06
gtf2b
general transcription factor IIB 		gene_product from Danio rerio 3.7e-06
ttb-1 gene from Caenorhabditis elegans 9.8e-06
AT3G10330 protein from Arabidopsis thaliana 2.8e-05
TfIIB
Transcription factor IIB 		protein from Drosophila melanogaster 6.3e-05
TFIIB
transcription factor IIB 		protein from Arabidopsis thaliana 0.00038
brf2
BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like 		gene_product from Danio rerio 0.00068

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  008401
        (567 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2055600 - symbol:AT2G45100 species:3702 "Arabi...  1033  5.1e-116  3
TAIR|locus:2083579 - symbol:AT3G09360 species:3702 "Arabi...  1062  2.1e-107  1
MGI|MGI:1919558 - symbol:Brf1 "BRF1 homolog, subunit of R...   422  1.0e-56   3
UNIPROTKB|F1NQ85 - symbol:BRF1 "Uncharacterized protein" ...   430  4.4e-56   3
UNIPROTKB|Q92994 - symbol:BRF1 "Transcription factor IIIB...   426  1.6e-55   3
SGD|S000003478 - symbol:BRF1 "TFIIIB B-related factor" sp...   428  1.4e-53   3
POMBASE|SPBC13E7.10c - symbol:brf1 "transcription factor ...   402  1.8e-53   3
ZFIN|ZDB-GENE-030131-6248 - symbol:brf1b "BRF1 homolog, s...   431  1.4e-52   3
ZFIN|ZDB-GENE-030131-6334 - symbol:brf1a "BRF1 homolog, s...   477  1.4e-52   2
UNIPROTKB|F1PRK4 - symbol:BRF1 "Uncharacterized protein" ...   386  1.3e-50   3
DICTYBASE|DDB_G0281215 - symbol:brf1 "transcription facto...   440  4.4e-46   2
FB|FBgn0038499 - symbol:Brf "Brf" species:7227 "Drosophil...   407  3.9e-45   2
UNIPROTKB|J9PB52 - symbol:BRF1 "Uncharacterized protein" ...   365  8.6e-45   3
WB|WBGene00000271 - symbol:brf-1 species:6239 "Caenorhabd...   413  1.8e-41   2
UNIPROTKB|G3X7R9 - symbol:G3X7R9 "Uncharacterized protein...   354  5.8e-41   3
CGD|CAL0004048 - symbol:BRF1 species:5476 "Candida albica...   386  5.8e-40   2
UNIPROTKB|P43072 - symbol:TDS4 "Transcription factor IIIB...   386  5.8e-40   2
RGD|1311158 - symbol:Brf1 "BRF1 homolog, subunit of RNA p...   288  1.3e-39   4
ASPGD|ASPL0000037776 - symbol:AN3116 species:162425 "Emer...   358  2.0e-35   2
TAIR|locus:4515102612 - symbol:AT1G30455 species:3702 "Ar...   208  8.5e-29   3
UNIPROTKB|H0YIV6 - symbol:BRF1 "Transcription factor IIIB...   244  2.7e-23   2
UNIPROTKB|F8VS45 - symbol:BRF1 "Transcription factor IIIB...   221  5.7e-21   2
UNIPROTKB|A3KN61 - symbol:BRF1 "Transcription factor IIIB...   221  9.3e-21   2
UNIPROTKB|F8VWT8 - symbol:BRF1 "Transcription factor IIIB...   221  9.3e-21   2
UNIPROTKB|Q3SYD7 - symbol:BRF1 "Transcription factor IIIB...   221  9.3e-21   2
UNIPROTKB|I3LCQ3 - symbol:BRF1 "Uncharacterized protein" ...   218  3.9e-17   1
UNIPROTKB|F8VXJ4 - symbol:BRF1 "Transcription factor IIIB...   146  2.4e-09   1
UNIPROTKB|F8VQ19 - symbol:BRF1 "Transcription factor IIIB...   110  2.3e-07   2
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"...   141  9.4e-07   1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"...   141  1.0e-06   1
UNIPROTKB|F8VWY1 - symbol:BRF1 "Transcription factor IIIB...   121  1.2e-06   1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot...   140  1.3e-06   1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"...   140  1.3e-06   1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation...   140  1.3e-06   1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac...   140  1.3e-06   1
RGD|619735 - symbol:Gtf2b "general transcription factor I...   140  1.3e-06   1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation...   138  2.2e-06   1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr...   136  3.7e-06   1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd...   132  9.8e-06   1
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi...   105  2.8e-05   2
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ...   125  6.3e-05   1
TAIR|locus:2062703 - symbol:TFIIB "transcription factor I...   104  0.00038   2
ZFIN|ZDB-GENE-040801-43 - symbol:brf2 "BRF2, subunit of R...   112  0.00068   2


>TAIR|locus:2055600 [details] [associations]
            symbol:AT2G45100 species:3702 "Arabidopsis thaliana"
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
            "translational initiation" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0010440 "stomatal
            lineage progression" evidence=RCA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
            GO:GO:0005634 GO:GO:0045893 EMBL:CP002685 GO:GO:0008270
            GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K15196 IPI:IPI00532450
            RefSeq:NP_182035.2 UniGene:At.50139 ProteinModelPortal:F4IW19
            SMR:F4IW19 PRIDE:F4IW19 EnsemblPlants:AT2G45100.1 GeneID:819117
            KEGG:ath:AT2G45100 OMA:LYITENH Uniprot:F4IW19
        Length = 557

 Score = 1033 (368.7 bits), Expect = 5.1e-116, Sum P(3) = 5.1e-116
 Identities = 209/377 (55%), Positives = 269/377 (71%)

Query:     1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
             MVWC  C ++V G RPYD+ L CD CG++LE+ NFSTE TFVKNAAGQSQ SGN ++++Q
Sbjct:     1 MVWCKHCGKNVPGIRPYDAALSCDLCGRILENFNFSTEVTFVKNAAGQSQASGNILKSVQ 60

Query:    61 SEYGASRERLMEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
             S   +SRER++ KA D++  +++AL IG+  D+++ +A  F+ IA+  NFTKGR  E V 
Sbjct:    61 SGMSSSRERIIRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVF 120

Query:   120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
             +SCLYL CRQ     LLIDFS+YL ++VY+LG+VYLQLC +LYI +  N  K VDPSIF+
Sbjct:   121 SSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFI 180

Query:   180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
              +F++ LL G  N K+  TA  I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct:   181 PRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKT 240

Query:   239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
             DIV IVHICEATL KRLIEF +T++ SLT ++    K E  +  AA      P       
Sbjct:   241 DIVNIVHICEATLTKRLIEFGDTEAASLTADELS--KTEREKETAALRSKRKPNFYKEGV 298

Query:   299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENS-- 355
             VLC H+D  KP   GLC SCY+EFMT+S GLEGG+DPPAFQ AE+ERM  KAS+EEN   
Sbjct:   299 VLCMHQDC-KPVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEENDKQ 357

Query:   356 -SFERESD-SPFMSRVD 370
              + +  SD S  +S VD
Sbjct:   358 VNLDGHSDESSTLSDVD 374

 Score = 73 (30.8 bits), Expect = 5.1e-116, Sum P(3) = 5.1e-116
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query:   412 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             SD S   SD+DD E+D Y    EE    KI ++  N  Y
Sbjct:   364 SDESSTLSDVDDRELDCYFRTPEEVRLVKIFFDHENPGY 402

 Score = 72 (30.4 bits), Expect = 5.1e-116, Sum P(3) = 5.1e-116
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query:   510 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 547
             N+ P  T +EA   M+ +K+    IN D LE+LFD SV
Sbjct:   448 NAPPPATGIEAVDSMVKRKKFRD-INCDYLEELFDASV 484


>TAIR|locus:2083579 [details] [associations]
            symbol:AT3G09360 species:3702 "Arabidopsis thaliana"
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
            "translational initiation" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007062 "sister
            chromatid cohesion" evidence=RCA] [GO:0010440 "stomatal lineage
            progression" evidence=RCA] [GO:0031048 "chromatin silencing by
            small RNA" evidence=RCA] [GO:0045132 "meiotic chromosome
            segregation" evidence=RCA] InterPro:IPR000812 InterPro:IPR011665
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
            KO:K15196 OMA:YGCDGDE EMBL:AK226688 IPI:IPI00523177
            RefSeq:NP_187547.2 UniGene:At.53231 ProteinModelPortal:Q0WVQ3
            STRING:Q0WVQ3 EnsemblPlants:AT3G09360.1 GeneID:820092
            KEGG:ath:AT3G09360 TAIR:At3g09360 HOGENOM:HOG000265442
            InParanoid:Q0WVQ3 PhylomeDB:Q0WVQ3 ProtClustDB:CLSN2681133
            Genevestigator:Q0WVQ3 Uniprot:Q0WVQ3
        Length = 604

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 218/420 (51%), Positives = 290/420 (69%)

Query:     1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
             MVWC+ C ++V G RPYD  L C+ CG++LE+ +FSTE TFVKNAAGQSQ SGN VR++Q
Sbjct:     1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60

Query:    61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
             S   +SRER    A D++  +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQ
Sbjct:    61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120

Query:   120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
             ASCLYL CR+ +   LLIDFS+YL ++VYELG+VYLQLC++LY+ +  N  K VDPSIF+
Sbjct:   121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180

Query:   180 HKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
              +F++ LL G  NK V  TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct:   181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240

Query:   239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
             DIV IVHICEATL KRLIEF +TDSG+L + +   R++E H+      P      S    
Sbjct:   241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNEL--RERESHKRSFTMKPT-----SNKEA 293

Query:   299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFE 358
             VLC H+D+ KPF  GLC  CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN    
Sbjct:   294 VLCMHQDS-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN---- 348

Query:   359 RESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASN-EGEGDHTKTPGVDATTEASDGSDN 417
              E     ++  +++ S         K C+ +   + +G  +H  T   D +   SD SD+
Sbjct:   349 -EGGISSLNHDEQLYSDYCSMSKRGKQCSEKGEKDKDGAEEHADTS--DESDNFSDISDD 405

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 104/253 (41%), Positives = 129/253 (50%)

Query:   294 SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE 353
             S    VLC H+D+ KPF  GLC  CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EE
Sbjct:   289 SNKEAVLCMHQDS-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREE 347

Query:   354 NSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 413
             N     E     ++  +++ S         K C     S +GE D     G +   + SD
Sbjct:   348 N-----EGGISSLNHDEQLYSDYCSMSKRGKQC-----SEKGEKDKD---GAEEHADTSD 394

Query:   414 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYXXXXXXXXXXXXXXXXXXXXSYK 473
              SDNFSDI D EV+GY++NEEE HYK I W EMN++Y                    S  
Sbjct:   395 ESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNS 454

Query:   474 NCPEGXXXXXXXXXXXXXXXXKSXXXXXXXXXXXXXNSGPAQTALEATRRMLTKKRLSSK 533
             NCPE                 KS             N+ P  TA+EA RR L KKRLSS 
Sbjct:   455 NCPEDARKAFEAAKADAA---KSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSV 511

Query:   534 INYDVLEKLFDDS 546
             INYDVLE LFD S
Sbjct:   512 INYDVLESLFDTS 524


>MGI|MGI:1919558 [details] [associations]
            symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
            transcription initiation factor IIIB (S. cerevisiae)" species:10090
            "Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006413 "translational initiation"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=IMP] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 MGI:MGI:1919558 GO:GO:0005634 GO:GO:0045893
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 HOVERGEN:HBG023540
            OrthoDB:EOG4NGGMJ EMBL:BC037224 IPI:IPI00319141 UniGene:Mm.196721
            ProteinModelPortal:Q8CFK2 SMR:Q8CFK2 STRING:Q8CFK2
            PhosphoSite:Q8CFK2 PRIDE:Q8CFK2 UCSC:uc007pfn.1
            HOGENOM:HOG000198688 InParanoid:Q8CFK2 Genevestigator:Q8CFK2
            GermOnline:ENSMUSG00000011158 Uniprot:Q8CFK2
        Length = 676

 Score = 422 (153.6 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
 Identities = 101/273 (36%), Positives = 154/273 (56%)

Query:    23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
             C  CG VLED+   +E  FV+N+ G S   G FV         T+   +       SR +
Sbjct:    25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84

Query:    70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
              ++     +  + + L + +    +  A  F+ +AV+++ T+GR+   V A+CLYL CR 
Sbjct:    85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142

Query:   130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
             +  P +L+D S+ L +NVY LG  +L L + L I    N    +DP +++ +F   LL  
Sbjct:   143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEF 196

Query:   190 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
             G K  +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +C
Sbjct:   197 GEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVC 256

Query:   248 EATLMKRLIEFENTDSGSLTIEDFMARKKELHE 280
             E+TL KRL EFE+T +  LTI++FM  K +L E
Sbjct:   257 ESTLRKRLTEFEDTPTSQLTIDEFM--KIDLEE 287

 Score = 127 (49.8 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
 Identities = 49/205 (23%), Positives = 80/205 (39%)

Query:   252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
             MK  +E E  D  S T      R K+L + ++  L     ++S   + +    +  +P A
Sbjct:   281 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKA 339

Query:   312 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSR 368
              G   +  ++      G +  + P   +  E E +  A++  N  F RE    D    + 
Sbjct:   340 KGALANLSKD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAA 395

Query:   369 VDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 425
              D      P   ES+  P         ++   +   +P  D    + DG  + S IDD E
Sbjct:   396 GDPDGGSRPLALESLLGPLPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLE 455

Query:   426 VDGYLHNEEEKHYKKIIWEEMNREY 450
             +D Y+ NE E   K  +W   N EY
Sbjct:   456 IDRYILNESEARVKAELWMRENAEY 480

 Score = 78 (32.5 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   517 ASTAGEAIEKMLEQKKISSKINYSVLRDL 545


>UNIPROTKB|F1NQ85 [details] [associations]
            symbol:BRF1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class protein
            binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
            GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
            GeneTree:ENSGT00390000010349 EMBL:AADN02003843 EMBL:AADN02003838
            EMBL:AADN02003839 EMBL:AADN02003840 EMBL:AADN02003841
            EMBL:AADN02003842 IPI:IPI00588765 Ensembl:ENSGALT00000019132
            Uniprot:F1NQ85
        Length = 593

 Score = 430 (156.4 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
 Identities = 99/264 (37%), Positives = 150/264 (56%)

Query:    23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
             C  CG VLED+   +E  FV+N+ G S   G FV         T+   + A     SR +
Sbjct:    23 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHANLGKESRAQ 82

Query:    70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
              ++     +  + N L + +    +  A  F+ +AV+++ T+GR+   V A+CLYL CR 
Sbjct:    83 TLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRT 140

Query:   130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
             +  P +L+D S+ L +NVY LG  +L L + L I    N    +DP +++ +F   L  G
Sbjct:   141 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFAHMLEFG 195

Query:   190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
               N +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++++V +CE
Sbjct:   196 DKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCE 255

Query:   249 ATLMKRLIEFENTDSGSLTIEDFM 272
             +TL KRL EFE T +  LTI++FM
Sbjct:   256 STLRKRLTEFEYTPTSQLTIDEFM 279

 Score = 98 (39.6 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
 Identities = 47/193 (24%), Positives = 82/193 (42%)

Query:   265 SLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT 324
             S  +EDF        + +   L N+ PK  G+   L K  D+ +        S + E   
Sbjct:   309 SKKLEDFEGEISSYQDEIEIELENSRPKAKGVFANLSK-SDSIEDNTL----SIFGEEEA 363

Query:   325 ISEGLEGGADP--PAF--QVAERERMVKASAEENSSFERESDSPFMS-RVDKVQSPEPE- 378
               E LE  A+     F  ++ E++R+      E+   +  +++P     ++ +  P P  
Sbjct:   364 EDEELEAAANHLNKDFCNELLEKDRLKPG---EDGDCKNGNEAPVRPPALESLLGPLPTA 420

Query:   379 -SIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKH 437
              S+G+ ++     +S + E      PG +      DG  + S IDD E+D Y+ NE E  
Sbjct:   421 ASLGITESIKECISSKDRE------PGENT----GDGELDLSGIDDSEIDRYILNETEAQ 470

Query:   438 YKKIIWEEMNREY 450
              K  +W + N +Y
Sbjct:   471 IKAELWMKENADY 483

 Score = 79 (32.9 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY+VL  L
Sbjct:   520 ASTAGEAIEKMLEQKKISSKINYNVLRDL 548

 Score = 67 (28.6 bits), Expect = 7.6e-53, Sum P(3) = 7.6e-53
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query:   320 EEFMTISEGLEGGADPPAFQVAER----ERMVKASAEENSSFERESDSPFMSRVD-KVQS 374
             +EFM I   LE   DPP+F   ++    +++ KA +++   FE E  S +   ++ ++++
Sbjct:   276 DEFMRID--LEEECDPPSFTAGQKKLKIQQLEKALSKKLEDFEGEISS-YQDEIEIELEN 332

Query:   375 PEPESIGVPKN 385
               P++ GV  N
Sbjct:   333 SRPKAKGVFAN 343


>UNIPROTKB|Q92994 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0000126 "transcription factor TFIIIB complex"
            evidence=NAS] [GO:0006384 "transcription initiation from RNA
            polymerase III promoter" evidence=TAS] [GO:0009303 "rRNA
            transcription" evidence=TAS] [GO:0009304 "tRNA transcription"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893
            EMBL:CH471061 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
            GO:GO:0009303 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 Reactome:REACT_1788 eggNOG:COG1405
            PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL512355 GO:GO:0006384
            GO:GO:0000126 KO:K15196 EMBL:U28838 EMBL:U75276 EMBL:AJ297406
            EMBL:AJ297407 EMBL:AJ297408 EMBL:AK096471 EMBL:AK294899
            EMBL:AK295579 EMBL:BC016743 EMBL:BC071637 EMBL:BC086856
            EMBL:BC103859 IPI:IPI00016859 IPI:IPI00157643 IPI:IPI00216075
            IPI:IPI00334140 IPI:IPI00607889 IPI:IPI01011010 IPI:IPI01012378
            PIR:I39065 RefSeq:NP_001229715.1 RefSeq:NP_001229716.1
            RefSeq:NP_001229717.1 RefSeq:NP_001229718.1 RefSeq:NP_001229719.1
            RefSeq:NP_001510.2 RefSeq:NP_663718.1 UniGene:Hs.424484
            ProteinModelPortal:Q92994 SMR:Q92994 IntAct:Q92994
            MINT:MINT-2859415 STRING:Q92994 PhosphoSite:Q92994 DMDM:20455319
            PaxDb:Q92994 PRIDE:Q92994 Ensembl:ENST00000327359
            Ensembl:ENST00000379937 Ensembl:ENST00000392557
            Ensembl:ENST00000440513 Ensembl:ENST00000446501
            Ensembl:ENST00000546474 Ensembl:ENST00000548421 GeneID:2972
            KEGG:hsa:2972 UCSC:uc001yql.2 UCSC:uc010axg.1 CTD:2972
            GeneCards:GC14M105675 HGNC:HGNC:11551 MIM:604902 neXtProt:NX_Q92994
            PharmGKB:PA164741296 HOVERGEN:HBG023540 InParanoid:Q92994
            OMA:YGCDGDE OrthoDB:EOG4NGGMJ PhylomeDB:Q92994 ChiTaRS:BRF1
            GenomeRNAi:2972 NextBio:11787 ArrayExpress:Q92994 Bgee:Q92994
            CleanEx:HS_BRF1 Genevestigator:Q92994 GermOnline:ENSG00000185024
            GO:GO:0009304 Uniprot:Q92994
        Length = 677

 Score = 426 (155.0 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
 Identities = 102/273 (37%), Positives = 154/273 (56%)

Query:    23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
             C  CG VLED+   +E  FV+++ G S   G FV         T+   +       SR +
Sbjct:    25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84

Query:    70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
              ++     +  + N L + +    +  A  F+ +AV+R+ T+GR+   V A+CLYL CR 
Sbjct:    85 TLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRT 142

Query:   130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
             +  P +L+D S+ L +NVY LG  +L L + L I    N    +DP +++ +F   LL  
Sbjct:   143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEF 196

Query:   190 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
             G K  +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +C
Sbjct:   197 GEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVC 256

Query:   248 EATLMKRLIEFENTDSGSLTIEDFMARKKELHE 280
             E+TL KRL EFE+T +  LTI++FM  K +L E
Sbjct:   257 ESTLRKRLTEFEDTPTSQLTIDEFM--KIDLEE 287

 Score = 110 (43.8 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
 Identities = 53/209 (25%), Positives = 83/209 (39%)

Query:   252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
             MK  +E E  D  S T      R K+L + ++  L     ++S   + +    +  +P A
Sbjct:   281 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKA 339

Query:   312 CGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 369
              G   S  ++  T   +  L G  D       E E +  A++  N    RE         
Sbjct:   340 KGGLASLAKDGSTEDTASSLCGEED------TEDEELEAAASHLNKDLYRELLGGAPGSS 393

Query:   370 DKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDI 421
             +   SPE    P ++G   +    TA++ G  D  +    +   D    + DG  + S I
Sbjct:   394 EAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGI 452

Query:   422 DDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             DD E+D Y+ NE E   K  +W   N EY
Sbjct:   453 DDLEIDRYILNESEARVKAELWMRENAEY 481

 Score = 79 (32.9 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   518 ASTAREAIEKMLEQKKISSKINYSVLRGL 546


>SGD|S000003478 [details] [associations]
            symbol:BRF1 "TFIIIB B-related factor" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0070893
            "transposon integration" evidence=IDA] [GO:0090074 "negative
            regulation of protein homodimerization activity" evidence=IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0001026 "TFIIIB-type transcription factor
            activity" evidence=IC] [GO:0000994 "RNA polymerase III core
            binding" evidence=IDA;IPI] [GO:0001156 "TFIIIC-class transcription
            factor binding" evidence=IDA;IPI] [GO:0001112 "DNA-dependent
            transcriptional open complex formation" evidence=IMP] [GO:0070898
            "RNA polymerase III transcriptional preinitiation complex assembly"
            evidence=IMP;IDA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0000126 "transcription factor TFIIIB complex" evidence=IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 SGD:S000003478 GO:GO:0045893 EMBL:BK006941
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
            PANTHER:PTHR11618 PROSITE:PS00782 EMBL:Y07703 Reactome:REACT_83470
            GO:GO:0090074 GO:GO:0000994 GO:GO:0001156 GO:GO:0070898
            Reactome:REACT_87991 GO:GO:0000126 PDB:1NGM PDBsum:1NGM
            GO:GO:0001026 GO:GO:0070893 InterPro:IPR023486 KO:K15196
            HOGENOM:HOG000198688 OrthoDB:EOG40P7GP EMBL:M91073 EMBL:L00630
            EMBL:Z73031 PIR:A44072 RefSeq:NP_011762.1 ProteinModelPortal:P29056
            SMR:P29056 DIP:DIP-191N IntAct:P29056 MINT:MINT-2783113
            STRING:P29056 PaxDb:P29056 PeptideAtlas:P29056 EnsemblFungi:YGR246C
            GeneID:853161 KEGG:sce:YGR246C CYGD:YGR246c
            GeneTree:ENSGT00390000010349 OMA:CRKERTH EvolutionaryTrace:P29056
            NextBio:973264 Genevestigator:P29056 GermOnline:YGR246C
            GO:GO:0001112 Uniprot:P29056
        Length = 596

 Score = 428 (155.7 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
 Identities = 96/274 (35%), Positives = 162/274 (59%)

Query:    18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
             ++ L C  CG V ED+   +E TF + +AG + + G+F+   QS   +G S     RE  
Sbjct:    20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79

Query:    71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
             +  A   +R +  AL+I E   I   A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct:    80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137

Query:   131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
                 +LIDFS+ L ++VY +GA +L++ + L+I +    L   DPS+F+  F ++L    
Sbjct:   138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193

Query:   191 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
              K KV   A  +   M +DW+  GR+P+G+ GA + ++   + L+ + ++IV + H+ E 
Sbjct:   194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253

Query:   250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
             TL +RL EF+NT +  L+++ F  R+ ++ +G A
Sbjct:   254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285

 Score = 89 (36.4 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query:   403 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             P  D   ++ SD  DN  D+DD E++ +L NEE    K+ IW  +N ++
Sbjct:   446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADF 494

 Score = 66 (28.3 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query:   511 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 543
             SG   TA ++ + ML K   S KINYD ++ LF
Sbjct:   564 SGDFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595


>POMBASE|SPBC13E7.10c [details] [associations]
            symbol:brf1 "transcription factor TFIIIB complex
            subunit Brf1" species:4896 "Schizosaccharomyces pombe" [GO:0000126
            "transcription factor TFIIIB complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006384 "transcription initiation from
            RNA polymerase III promoter" evidence=TAS] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 PomBase:SPBC13E7.10c GO:GO:0045893 GO:GO:0046872
            EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 GO:GO:0006384
            GO:GO:0000126 HOGENOM:HOG000198688 PIR:T40176 RefSeq:NP_596265.2
            STRING:Q9P6R0 EnsemblFungi:SPBC13E7.10c.1 GeneID:2540071
            OrthoDB:EOG40P7GP NextBio:20801208 Uniprot:Q9P6R0
        Length = 492

 Score = 402 (146.6 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
 Identities = 94/279 (33%), Positives = 151/279 (54%)

Query:     4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
             C +C               C +CG V+E     +E TF + + G + + G+ V       
Sbjct:     3 CPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHA 62

Query:    57 RTIQSEY---GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
             RT    Y   G+   R +  A    R    A+ +  ++  +  A R++ +A+  NF KGR
Sbjct:    63 RTFGGPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGR 122

Query:   114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
             R++ V ASCLY+ CR      +LIDFS+ L INV++LG+ +L+LC+VL      N L  +
Sbjct:   123 RSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVL----RPN-LPLL 177

Query:   174 DPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
             DPS+++ +F   L  G    +V + A  ++A M RDW+  GR+P+G+CGA L ++A  + 
Sbjct:   178 DPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNN 237

Query:   233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
              + S  ++V +V + + T+ KRL EF+ T+SG L+I DF
Sbjct:   238 FRRSVREVVHVVKVADITIQKRLDEFKLTESGDLSIADF 276

 Score = 97 (39.2 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
 Identities = 32/138 (23%), Positives = 60/138 (43%)

Query:   329 LEGGADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQ 373
             LEG +DPP+F   ++ +   A    N    +E  SP                +S+  KV+
Sbjct:   281 LEGQSDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVE 340

Query:   374 SPE-PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 432
             S E P  +   +    +  +   +GD  +   +    + S+      D+DD E++  L +
Sbjct:   341 SQETPVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLD 400

Query:   433 EEEKHYKKIIWEEMNREY 450
             ++E   K  +W E+N++Y
Sbjct:   401 KDEILTKTQVWMELNKDY 418

 Score = 83 (34.3 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query:   510 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 545
             + G A TA E+ + M+ ++  S KINY+ L+ LFD+
Sbjct:   454 SDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489


>ZFIN|ZDB-GENE-030131-6248 [details] [associations]
            symbol:brf1b "BRF1 homolog, subunit of RNA
            polymerase III transcription initiation factor IIIBb" species:7955
            "Danio rerio" [GO:0017025 "TBP-class protein binding" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6248
            GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            PANTHER:PTHR11618 KO:K15196 HOVERGEN:HBG023540 HSSP:P61999
            EMBL:BC060523 IPI:IPI00500469 RefSeq:NP_956183.1 UniGene:Dr.7329
            ProteinModelPortal:Q6P9Z3 STRING:Q6P9Z3 GeneID:334316
            KEGG:dre:334316 CTD:334316 InParanoid:Q6P9Z3 NextBio:20810348
            Uniprot:Q6P9Z3
        Length = 693

 Score = 431 (156.8 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
 Identities = 103/282 (36%), Positives = 152/282 (53%)

Query:     4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
             C +C        P      C  CG VLED+   +E  FV+N+ G S   G FV       
Sbjct:     5 CKNCGGSDIDTDPARGSAVCTACGSVLEDNIIVSEVQFVENSGGVSSAVGQFVSADGTSK 64

Query:    59 ---IQSEYGAS--RERLMEKAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKG 112
                + S +  S  +E   +   +  RQ+ N    +  +   +  A  F+ + V+++ T+G
Sbjct:    65 APVLGSGFHTSLGKESRAQTLQNGKRQIHNLGSQLQLNQHCLDTAFNFFKMVVSKHLTRG 124

Query:   113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
             R+   V A+CLYL CR +  P +L+D S+ L +NVY LG  +L L + L I    N    
Sbjct:   125 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCI----NA-PA 179

Query:   173 VDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
             VDP +++ +F   +L  G K  +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  
Sbjct:   180 VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARM 238

Query:   231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
             H  + +  +++ +V +CE TL KRL EFE T + SLTI++FM
Sbjct:   239 HEFRRTVKEVISVVKVCETTLRKRLTEFEETPTSSLTIDEFM 280

 Score = 84 (34.6 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINYDVL  L
Sbjct:   524 ASTAGEAIEKMLEQKKISSKINYDVLRDL 552

 Score = 73 (30.8 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query:   400 TKTPGVDATTEASDGSD-NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             T+T  V+   E SD  + +   ID+ E++ Y+ NE E   K  +W + N EY
Sbjct:   440 TETTNVE---EKSDSGELDLDGIDEEEIEKYILNEIEVEAKTELWMKQNEEY 488

 Score = 50 (22.7 bits), Expect = 3.5e-50, Sum P(3) = 3.5e-50
 Identities = 19/94 (20%), Positives = 38/94 (40%)

Query:   320 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 379
             +EFM +   LE   DPP+F   +++  ++   +E      E      S  D++++    S
Sbjct:   277 DEFMRVD--LEKECDPPSFVAGQKKVKMQQLEQELVKKLEEYQGEIDSYRDEIETQLAGS 334

Query:   380 IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 413
                       + + E +   + T G+    +A D
Sbjct:   335 SRTKMKGIYASYAREDDDSLSVTSGLTGDEDAED 368


>ZFIN|ZDB-GENE-030131-6334 [details] [associations]
            symbol:brf1a "BRF1 homolog, subunit of RNA
            polymerase III transcription initiation factor IIIBa" species:7955
            "Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
            protein binding" evidence=IEA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0006413 "translational initiation" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6334
            GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
            GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 KO:K15196
            HOVERGEN:HBG023540 OrthoDB:EOG4NGGMJ HOGENOM:HOG000198688
            HSSP:P61999 EMBL:BC046877 IPI:IPI00488634 RefSeq:NP_956192.1
            UniGene:Dr.20342 ProteinModelPortal:Q802Z8 GeneID:334402
            KEGG:dre:334402 CTD:334402 InParanoid:Q802Z8 NextBio:20810386
            Uniprot:Q802Z8
        Length = 661

 Score = 477 (173.0 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 146/463 (31%), Positives = 227/463 (49%)

Query:    23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------------TIQSEYGA-SRER 69
             C  CG VLED+   +E TFV++  G S   G FV               Q+  G  SR  
Sbjct:    23 CMGCGSVLEDNIIVSEVTFVESGGGGSSAVGQFVAGDASGNVPSLGGNFQTSVGRESRAA 82

Query:    70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
              ++ A   +  + + L + +    +  A  FY +A++++ TKGR++  V A+CLYL CR 
Sbjct:    83 TLQNAKRQINHLGHQLQMNQ--HCLDTAFNFYKMALSKHLTKGRKSTHVIAACLYLVCRT 140

Query:   130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
             +  P +L+D S+ L +NVY LG  +L L + L I    N    +DP +++ +F  +LL  
Sbjct:   141 EGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCI----NA-PAIDPCLYIPRFA-QLLEF 194

Query:   190 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
             G K  +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +C
Sbjct:   195 GEKSHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTIKEVISVVKVC 254

Query:   248 EATLMKRLIEFENTDSGSLTIEDFMARKKELH---EGVAANLPNNGPKVSGMNEVLCKHK 304
             EATL KRL EFE+T +  LTIE+FM    E        AA L     K+  + + L K  
Sbjct:   255 EATLRKRLYEFEDTPTSELTIEEFMKTDLEQECDPPSFAAGLRKQ--KLKQIEQELAKKV 312

Query:   305 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPA---FQVAERERMVKASAEENSSFERES 361
             D  +   CG     Y++ + +   LE    P A   +    RE  V  S   +S  + E 
Sbjct:   313 DDIEGEICG-----YQDEIEVE--LES-CRPKARGIYASCSREDDV-VSLASSSHLDGED 363

Query:   362 D-----SPFMSRVDKVQSPEPESIGVPKNCTTQ-------TASNEGEGDHTKTPGVDATT 409
             D     +  +   ++ Q  + E + + K  +         T+++ G  +     G +   
Sbjct:   364 DELRAAASHLYGENEEQEQDGERVSLTKRPSLSLLLGALPTSASLGLSESITKMGEEKEN 423

Query:   410 --EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
               EA  G  + S ID+ E+D Y+ N++E   K  +W   N +Y
Sbjct:   424 DVEAEGGELDLSGIDEDEIDRYILNDKEVKVKTELWMIQNADY 466

 Score = 85 (35.0 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +KR+S+KINYDVL+ L
Sbjct:   503 ANTADEAIEKMLEQKRISTKINYDVLKDL 531


>UNIPROTKB|F1PRK4 [details] [associations]
            symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
            PRINTS:PR00685 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
            GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
            GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
            Ensembl:ENSCAFT00000029237 Uniprot:F1PRK4
        Length = 616

 Score = 386 (140.9 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
 Identities = 87/230 (37%), Positives = 136/230 (59%)

Query:    46 AGQSQ-LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
             AG++  L G F   +  E   SR + ++     +  + N L + +    +  A  F+ +A
Sbjct:     2 AGKTPTLGGGFHVNLGKE---SRAQTLQNGRRQIHHLGNQLQLNQ--HCLDTAFNFFKMA 56

Query:   105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
             V+++ T+GR+   V A+CLYL CR +  P +L+D S+ L +NVY LG  +L L + L I 
Sbjct:    57 VSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI- 115

Query:   165 DESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGA 222
                N    +DP +++ +F   LL  G K  +V  TA  +L  MKRDW+ TGR+PSGLCGA
Sbjct:   116 ---NA-PAIDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGA 170

Query:   223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
             AL V+A  H  + +  +++ +V +CE+TL KRL EFE+T +  LT+++FM
Sbjct:   171 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 220

 Score = 103 (41.3 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
 Identities = 52/208 (25%), Positives = 79/208 (37%)

Query:   256 IEFENT-DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG- 313
             I+ E   D  S T      R K+L + ++  L     ++S   + +    +  +P A G 
Sbjct:   222 IDLEGECDPPSYTAGQRKLRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGA 281

Query:   314 ---LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD 370
                L R    E  T S  L G  DP      E E +   ++  N  F +E     +S   
Sbjct:   282 LATLTRDGSVEDTTSS--LFGEEDP------EDEELEAVASHLNKDFYQELLGDSISSSS 333

Query:   371 KV--------QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 422
             +V        + P  ES+  P         ++   +   +   D T    DG  + S ID
Sbjct:   334 EVAGGAEGGSRPPALESLLGPLPTAASLGISDSIRECISSQSQDPTDPCGDGELDLSGID 393

Query:   423 DFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             D E+D Y+ NE E   K  +W   N EY
Sbjct:   394 DLEIDRYILNEAEARVKAELWMRENAEY 421

 Score = 78 (32.5 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   458 ASTAGEAIEKMLEQKKISSKINYSVLRDL 486


>DICTYBASE|DDB_G0281215 [details] [associations]
            symbol:brf1 "transcription factor IIIB subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006383 "transcription
            from RNA polymerase III promoter" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA;IC] [GO:0000126 "transcription factor TFIIIB
            complex" evidence=IDA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
            protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006384 "transcription
            initiation from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 dictyBase:DDB_G0281215
            GO:GO:0045893 GenomeReviews:CM000152_GR EMBL:AAFI02000040
            GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 InterPro:IPR021752
            Pfam:PF11781 GO:GO:0006384 GO:GO:0000126 KO:K15196
            RefSeq:XP_640891.1 ProteinModelPortal:Q54U85 STRING:Q54U85
            EnsemblProtists:DDB0231089 GeneID:8622948 KEGG:ddi:DDB_G0281215
            InParanoid:Q54U85 OMA:CASENSQ Uniprot:Q54U85
        Length = 706

 Score = 440 (159.9 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
 Identities = 105/276 (38%), Positives = 151/276 (54%)

Query:     4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--S 61
             C +C          +  + C  CG V E  N  +E  F     G S + G FV   +  S
Sbjct:     5 CGNCGNDSFASSN-EGSVVCTACGTVKESANIVSEVQF----GGDSSIVGTFVSATRKPS 59

Query:    62 EYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
              Y +     SR   +E A   + Q+ N+L I     ++  A+R + +A+  NFTKGR+T 
Sbjct:    60 SYRSLGGRDSRAMSVENARKKLDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTR 117

Query:   117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
              V A+CLY+ CR++  P LLIDFS  L +NV+ +   +LQL ++L I      L  VDPS
Sbjct:   118 LVAAACLYIVCRRERTPHLLIDFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPS 172

Query:   177 IFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
              F+ +F   L  G   K V  TA  ++A MKRDW++ GRKPSG+CGA+LY+++  HG K 
Sbjct:   173 FFIQRFASALEFGDQTKDVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKR 232

Query:   236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
             S  +IV +V I E TL+ RL EF  T + +L  ++F
Sbjct:   233 SMKEIVHVVKIGEQTLINRLDEFRKTPTATLRFDEF 268

 Score = 70 (29.7 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query:   403 PGVDATTEAS--DGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREY 450
             P + +T + S    +D   ++ D E+D YL H+++    K+ IW E+N+E+
Sbjct:   520 PTITSTIDQSVFAPNDELENLSDEELDFYLEHDKDTVKKKEEIWVELNKEW 570

 Score = 45 (20.9 bits), Expect = 1.9e-43, Sum P(2) = 1.9e-43
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query:   368 RVDKVQSPEPESIGVPKNCTTQ---TASNEGEGDHTKTPGVDATTEASDGSDN 417
             ++ + QS EP++   P + TT    T +   + + +  P +D  T  +   D+
Sbjct:   464 KIKESQSQEPDTTPPPSSTTTTQTTTTTTTSQNNESSAP-IDLPTPINKTMDS 515


>FB|FBgn0038499 [details] [associations]
            symbol:Brf "Brf" species:7227 "Drosophila melanogaster"
            [GO:0006359 "regulation of transcription from RNA polymerase III
            promoter" evidence=ISS;IDA;IPI] [GO:0000126 "transcription factor
            TFIIIB complex" evidence=ISS] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0006383 "transcription from RNA polymerase III
            promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=IPI] [GO:0048812
            "neuron projection morphogenesis" evidence=IMP] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
            GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 GO:GO:0006383 GO:GO:0006359 eggNOG:COG1405
            PANTHER:PTHR11618 EMBL:AF262374 HSSP:P61999
            ProteinModelPortal:Q9NB72 SMR:Q9NB72 STRING:Q9NB72 PaxDb:Q9NB72
            PRIDE:Q9NB72 FlyBase:FBgn0038499 InParanoid:Q9NB72
            OrthoDB:EOG4SJ3VV ArrayExpress:Q9NB72 Bgee:Q9NB72 Uniprot:Q9NB72
        Length = 662

 Score = 407 (148.3 bits), Expect = 3.9e-45, Sum P(2) = 3.9e-45
 Identities = 134/474 (28%), Positives = 214/474 (45%)

Query:     4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
             C +C  +            C  CG VLED    +E  F +   G + + G FV    S  
Sbjct:     7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGG 65

Query:    62 --EYG----------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
                YG           SRE  ++KA  D+  +   L +  S      A  F+ +A+ R+ 
Sbjct:    66 ATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQL--SQHYADTALNFFKMALGRHL 123

Query:   110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
             T+GR++  + A+C+Y+ CR +    LLID S+   I  YELG  YL+L   L I    N+
Sbjct:   124 TRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCI----NI 179

Query:   170 LKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
                +DP +++ +F +RL  G    +V  TA  I+  MK+D + +GR+P+GLCGAAL ++A
Sbjct:   180 -PSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAA 238

Query:   229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE---GVAAN 285
               H    +  D++ +V I E+TL KRL EF  T SG LT+E+FM    E  +      A 
Sbjct:   239 RMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAA 298

Query:   286 LPNNGPKVSGMNE----VLCKHKDTGKPFACG-LCRSCYEEFMTISEGLEGGADPPAFQV 340
                +  ++  M E     L K  D       G    S Y + +T  +GL      P+   
Sbjct:   299 RKKDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQ-LTKGKGLSP-LSSPSTPN 356

Query:   341 AERERMVKASAEENSSFERESDSPFMSRV----DKVQSPEPESIGVPKNCTTQTASNEGE 396
             +  E+ ++   EE+  F  +S++  +  +    + V+  EP  +                
Sbjct:   357 SSSEKDIEL--EESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVAGIEGLRPDIEAICR 414

Query:   397 GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
                +    V+   +  +      D++D E+D Y+  EEE   K  +W+ +N EY
Sbjct:   415 VTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLTEEESVAKLEMWKNLNAEY 468

 Score = 94 (38.1 bits), Expect = 3.9e-45, Sum P(2) = 3.9e-45
 Identities = 18/33 (54%), Positives = 26/33 (78%)

Query:   512 GPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 544
             GP+ TA EA  +ML +K++SSKINY++L+ L D
Sbjct:   501 GPSSTAGEAIEKMLQEKKISSKINYEILKTLTD 533


>UNIPROTKB|J9PB52 [details] [associations]
            symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
            protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 GO:GO:0005634
            GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
            GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
            Ensembl:ENSCAFT00000046229 Uniprot:J9PB52
        Length = 562

 Score = 365 (133.5 bits), Expect = 8.6e-45, Sum P(3) = 8.6e-45
 Identities = 75/172 (43%), Positives = 112/172 (65%)

Query:   103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
             +AV+++ T+GR+   V A+CLYL CR +  P +L+D S+ L +NVY LG  +L L + L 
Sbjct:     1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60

Query:   163 IADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLC 220
             I    N    +DP +++ +F   LL  G K  +V  TA  +L  MKRDW+ TGR+PSGLC
Sbjct:    61 I----NA-PAIDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLC 114

Query:   221 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
             GAAL V+A  H  + +  +++ +V +CE+TL KRL EFE+T +  LT+++FM
Sbjct:   115 GAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166

 Score = 103 (41.3 bits), Expect = 8.6e-45, Sum P(3) = 8.6e-45
 Identities = 52/208 (25%), Positives = 79/208 (37%)

Query:   256 IEFENT-DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG- 313
             I+ E   D  S T      R K+L + ++  L     ++S   + +    +  +P A G 
Sbjct:   168 IDLEGECDPPSYTAGQRKLRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGA 227

Query:   314 ---LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD 370
                L R    E  T S  L G  DP      E E +   ++  N  F +E     +S   
Sbjct:   228 LATLTRDGSVEDTTSS--LFGEEDP------EDEELEAVASHLNKDFYQELLGDSISSSS 279

Query:   371 KV--------QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 422
             +V        + P  ES+  P         ++   +   +   D T    DG  + S ID
Sbjct:   280 EVAGGAEGGSRPPALESLLGPLPTAASLGISDSIRECISSQSQDPTDPCGDGELDLSGID 339

Query:   423 DFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             D E+D Y+ NE E   K  +W   N EY
Sbjct:   340 DLEIDRYILNEAEARVKAELWMRENAEY 367

 Score = 78 (32.5 bits), Expect = 8.6e-45, Sum P(3) = 8.6e-45
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   404 ASTAGEAIEKMLEQKKISSKINYSVLRDL 432


>WB|WBGene00000271 [details] [associations]
            symbol:brf-1 species:6239 "Caenorhabditis elegans"
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0005634 GO:GO:0006898 GO:GO:0040007
            GO:GO:0045893 GO:GO:0002119 GO:GO:0008270 GO:GO:0000003
            GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 EMBL:FO080734
            KO:K15196 GeneTree:ENSGT00390000010349 PIR:T16368
            RefSeq:NP_495526.1 ProteinModelPortal:Q20429 SMR:Q20429
            STRING:Q20429 PaxDb:Q20429 EnsemblMetazoa:F45E12.2.1
            EnsemblMetazoa:F45E12.2.2 GeneID:174199 KEGG:cel:CELE_F45E12.2
            UCSC:F45E12.2 CTD:174199 WormBase:F45E12.2 InParanoid:Q20429
            OMA:CRLENTA NextBio:882969 Uniprot:Q20429
        Length = 759

 Score = 413 (150.4 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
 Identities = 142/473 (30%), Positives = 208/473 (43%)

Query:     4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFV---RTI 59
             CS+C               C  CG VLE+    TE  F + A G    L G FV   R  
Sbjct:     5 CSNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFVSSERAA 64

Query:    60 QSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
              + +       SRE    K    + ++ + L I  +   ++ A  FY + V+RN T+GR 
Sbjct:    65 ANNFNGMGSQESREMTYAKGRKVIDELGSQLRI--NSHCMNTAFNFYKMCVSRNLTRGRN 122

Query:   115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
                V A C+Y+ CR ++   LL+DFS+   INV++LG     L + L I    N L   D
Sbjct:   123 RSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRI----N-LPSTD 177

Query:   175 PSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
             P +++ +F   L  G  +K V + A  ++  MKRDW++TGR+P+G+CGAAL ++A +   
Sbjct:   178 PCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLIAARSLNF 237

Query:   234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAA--------- 284
               S +DIV++VHI E  + KRL EF  T SGSLTI++F     E  E   A         
Sbjct:   238 NRSINDIVRVVHISEGVIRKRLDEFSQTPSGSLTIDEFSTVDLEHSEDPPAYRESRRKAR 297

Query:   285 --NLPNNGPKVSGMNEVLCK---HKDTG--KPFACGLCRSCYEEFMTISEGLEGGADPPA 337
                L     +   M E L +   H +    K       +S Y     ISE L  G +   
Sbjct:   298 EDQLRKEAEQAESMKEQLGEMEAHVEAALDKKRKEKFSKSPYARM--ISENL--GKENDK 353

Query:   338 FQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEG 397
              Q    E +V++S  E  + E   +   ++ V      +P +    +       S E  G
Sbjct:   354 MQTLT-ETVVESSGLEKGADEMVRNE-IINTVFNAAEEDPCTSNSLEKYDKYRPSLESLG 411

Query:   398 -DHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 449
                T  P  +        +D   DI D E+D Y+  E E   K   W + N E
Sbjct:   412 IKRTSEPEPEPVPHPIVNADLEEDISDSEIDSYILTESEVAIKTDYWMKANGE 464

 Score = 58 (25.5 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
 Identities = 9/23 (39%), Positives = 19/23 (82%)

Query:   520 ATRRMLTKKRLSSKINYDVLEKL 542
             A  +++ +K+LS+K+NY++L+ L
Sbjct:   503 AVEKVIAEKKLSNKVNYEMLKDL 525


>UNIPROTKB|G3X7R9 [details] [associations]
            symbol:G3X7R9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000812 InterPro:IPR011665
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
            GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
            GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
            GeneTree:ENSGT00390000010349 EMBL:DAAA02053372 EMBL:DAAA02053373
            EMBL:DAAA02053374 EMBL:DAAA02053375 EMBL:DAAA02053376
            Ensembl:ENSBTAT00000044278 Uniprot:G3X7R9
        Length = 639

 Score = 354 (129.7 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
 Identities = 84/240 (35%), Positives = 141/240 (58%)

Query:    46 AGQSQ-LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
             AG++  L G F  ++  E   SR + ++     +  + N L + +    +  A  F+ +A
Sbjct:     2 AGKAPTLGGGFHVSLGKE---SRAQTLQNGRRQIHHLGNQLQLNQ--HCLDTAFNFFKMA 56

Query:   105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY--LNINVYELGAVYLQLCQVLY 162
             V+++ T+GRRT  V A+CLYL CR +  P +L   + +   +++V+E    +L + +  Y
Sbjct:    57 VSKHLTRGRRTAHVVAACLYLVCRTEGTPRILRHLAVHGGFSVHVFESNRTFLVISR--Y 114

Query:   163 IADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLC 220
             +  E+  L+  +P +++ +F   LL  G K  +V  TA  +L  MKRDW+ TGR+PSGLC
Sbjct:   115 LCVEAEALR--NPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLC 171

Query:   221 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 280
             GAAL V+A  H  + +  +++ +V +CE+TL KRL EFE+T +  LT+++FM  K +L E
Sbjct:   172 GAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM--KIDLEE 229

 Score = 95 (38.5 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
 Identities = 49/209 (23%), Positives = 79/209 (37%)

Query:   252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
             MK  +E E  D  S T      R K+L + ++  L     +++   + +    +  +P A
Sbjct:   223 MKIDLE-EECDPPSYTAGQRKLRLKQLEQVLSKQLEAVEGEITTYQDAIEIELENSRPKA 281

Query:   312 CGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFM 366
              G   S  ++      +  L G  D       E E +  A++  N  F +E      P  
Sbjct:   282 KGALASLTKDGSVEDSTSSLCGEED------TEDEELEAAASHLNKDFYQELLGGSVPGS 335

Query:   367 SRVDKV-----QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 421
             S    V     + P  ES+  P         ++   +   +P  +      DG  + S I
Sbjct:   336 SEAAGVPEEGRRPPALESLLGPLPTAASLGISDSIRECISSPSHEPKDACGDGELDLSGI 395

Query:   422 DDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             DD E+D Y+ NE E   K  +W   N EY
Sbjct:   396 DDLEIDRYILNEAEARVKAELWMRENAEY 424

 Score = 77 (32.2 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   461 ASTAGEAIEKMLEQKKISSKINYSVLRGL 489


>CGD|CAL0004048 [details] [associations]
            symbol:BRF1 species:5476 "Candida albicans" [GO:0000126
            "transcription factor TFIIIB complex" evidence=ISS] [GO:0006384
            "transcription initiation from RNA polymerase III promoter"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000994
            "RNA polymerase III core binding" evidence=IEA] [GO:0001156
            "TFIIIC-class transcription factor binding" evidence=IEA]
            [GO:0001112 "DNA-dependent transcriptional open complex formation"
            evidence=IEA] [GO:0090074 "negative regulation of protein
            homodimerization activity" evidence=IEA] [GO:0070898 "RNA
            polymerase III transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0070893 "transposon integration" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
            GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
            GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
            RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
            SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
            KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
        Length = 553

 Score = 386 (140.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 90/278 (32%), Positives = 151/278 (54%)

Query:     4 CSSCARHVTGHRPYDS--QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
             C +C         Y +   + C RCG VLE++   +E  F ++++G + + G  V   Q+
Sbjct:    10 CKTCGHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMVGADQA 69

Query:    62 E--YGASRERLMEKAFDDM----RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
                +   R+  ME     +    R++K  A  +   D I   A  ++ +A+  NF +GRR
Sbjct:    70 RATFAGGRQNAMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWFRLALTLNFVQGRR 129

Query:   115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
             +  V A+CLY+ACR++    +LIDFS+ L I+VY LGA +L++ + L+I      L   D
Sbjct:   130 SNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLAD 185

Query:   175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
             PS+F+  F ++L       KV   A  +   M  DWI  GR+P+G+ GA + ++A  +  
Sbjct:   186 PSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNF 245

Query:   234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
             + S ++IV + H+ E TL +RL EF+ T +G+L+++ F
Sbjct:   246 RRSHAEIVAVSHVGEETLQRRLNEFKKTKAGTLSVKSF 283

 Score = 56 (24.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query:   512 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 542
             G  ++A ++ +  ++K  +S KINYD L+ L
Sbjct:   516 GTPRSAADSAKMYISKTSVSKKINYDSLKGL 546


>UNIPROTKB|P43072 [details] [associations]
            symbol:TDS4 "Transcription factor IIIB 70 kDa subunit"
            species:237561 "Candida albicans SC5314" [GO:0000126 "transcription
            factor TFIIIB complex" evidence=ISS] [GO:0006384 "transcription
            initiation from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
            GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
            GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
            RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
            SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
            KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
        Length = 553

 Score = 386 (140.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 90/278 (32%), Positives = 151/278 (54%)

Query:     4 CSSCARHVTGHRPYDS--QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
             C +C         Y +   + C RCG VLE++   +E  F ++++G + + G  V   Q+
Sbjct:    10 CKTCGHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMVGADQA 69

Query:    62 E--YGASRERLMEKAFDDM----RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
                +   R+  ME     +    R++K  A  +   D I   A  ++ +A+  NF +GRR
Sbjct:    70 RATFAGGRQNAMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWFRLALTLNFVQGRR 129

Query:   115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
             +  V A+CLY+ACR++    +LIDFS+ L I+VY LGA +L++ + L+I      L   D
Sbjct:   130 SNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLAD 185

Query:   175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
             PS+F+  F ++L       KV   A  +   M  DWI  GR+P+G+ GA + ++A  +  
Sbjct:   186 PSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNF 245

Query:   234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
             + S ++IV + H+ E TL +RL EF+ T +G+L+++ F
Sbjct:   246 RRSHAEIVAVSHVGEETLQRRLNEFKKTKAGTLSVKSF 283

 Score = 56 (24.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query:   512 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 542
             G  ++A ++ +  ++K  +S KINYD L+ L
Sbjct:   516 GTPRSAADSAKMYISKTSVSKKINYDSLKGL 546


>RGD|1311158 [details] [associations]
            symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
            transcription initiation factor IIIB (S. cerevisiae)" species:10116
            "Rattus norvegicus" [GO:0003743 "translation initiation factor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
            protein binding" evidence=IEA] [GO:0043488 "regulation of mRNA
            stability" evidence=IEA;ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 RGD:1311158 GO:GO:0005634 GO:GO:0045893
            GO:GO:0008270 GO:GO:0006352 GO:GO:0003743 GO:GO:0043488
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            PANTHER:PTHR11618 KO:K15196 CTD:2972 OrthoDB:EOG4NGGMJ
            GeneTree:ENSGT00390000010349 EMBL:CH474034 IPI:IPI00366169
            RefSeq:NP_001100231.1 UniGene:Rn.205393 Ensembl:ENSRNOT00000019689
            GeneID:299347 KEGG:rno:299347 UCSC:RGD:1311158 NextBio:645266
            Uniprot:D4A8W8
        Length = 686

 Score = 288 (106.4 bits), Expect = 1.3e-39, Sum P(4) = 1.3e-39
 Identities = 65/148 (43%), Positives = 94/148 (63%)

Query:   135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-- 192
             +L+D S+ L +NVY LG  +L L + L I    N    +DP +++ +F   LL  G K  
Sbjct:   158 MLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEFGEKNH 211

Query:   193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
             +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +CE+TL 
Sbjct:   212 EVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLR 271

Query:   253 KRLIEFENTDSGSLTIEDFMARKKELHE 280
             KRL EFE+T +  LTI++FM  K +L E
Sbjct:   272 KRLTEFEDTPTSQLTIDEFM--KIDLEE 297

 Score = 125 (49.1 bits), Expect = 1.3e-39, Sum P(4) = 1.3e-39
 Identities = 49/205 (23%), Positives = 81/205 (39%)

Query:   252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
             MK  +E E  D  S T      R K+L + ++  L     ++S   + +    +  +P A
Sbjct:   291 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIELENSRPKA 349

Query:   312 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSR 368
              G   +  ++      G +  + P   +  E E +  A++  N  F RE   +D    + 
Sbjct:   350 KGALANLSKD----GSGEDATSSPFCEEDTEDEELEAAASHMNKDFYRELLGADGGSEAA 405

Query:   369 VDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 425
              D      P   ES+  P         ++   +   +P  D    + DG  + S IDD E
Sbjct:   406 EDADGGSRPLALESLLGPLPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLE 465

Query:   426 VDGYLHNEEEKHYKKIIWEEMNREY 450
             +D Y+ NE E   K  +W   N EY
Sbjct:   466 IDRYILNESEARVKAELWMRENAEY 490

 Score = 80 (33.2 bits), Expect = 1.3e-39, Sum P(4) = 1.3e-39
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query:    23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
             C  CG VLED+   +E  FV+N+ G S   G FV
Sbjct:    25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFV 58

 Score = 78 (32.5 bits), Expect = 1.3e-39, Sum P(4) = 1.3e-39
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   527 ASTAGEAIEKMLEQKKISSKINYSVLRDL 555


>ASPGD|ASPL0000037776 [details] [associations]
            symbol:AN3116 species:162425 "Emericella nidulans"
            [GO:0000126 "transcription factor TFIIIB complex" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0006413 "translational
            initiation" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
            initiation" evidence=IEA] [GO:0003743 "translation initiation
            factor activity" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
            GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 EMBL:BN001306
            GO:GO:0006352 EMBL:AACD01000051 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
            PANTHER:PTHR11618 KO:K15196 HOGENOM:HOG000198688 OMA:CRKERTH
            RefSeq:XP_660720.1 ProteinModelPortal:Q5B8L4 STRING:Q5B8L4
            EnsemblFungi:CADANIAT00009960 GeneID:2873798 KEGG:ani:AN3116.2
            OrthoDB:EOG4SJ8P6 Uniprot:Q5B8L4
        Length = 713

 Score = 358 (131.1 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
 Identities = 124/438 (28%), Positives = 204/438 (46%)

Query:    34 NFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEI 93
             N S  A  +    GQ   SG    T+ SE     E    ++      ++ +  +GE D+ 
Sbjct:    59 NPSCPAPHIIEDDGQKVCSG--CGTVVSEANIVSEVTFGESASGAAIVQGSF-VGE-DQ- 113

Query:    94 VHVAKRFYG----IAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVY 148
              H A +  G    +AV  NF +GRRT+ V A CLY+ACR Q     +LIDF++ L INV+
Sbjct:   114 THSASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVF 173

Query:   149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKR 207
             +LG  Y  L   L +     ++  +DP   +++F  +L  G    +V   A  I+  M R
Sbjct:   174 KLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVASEAVRIVQRMNR 233

Query:   208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 267
             DW+TTGR+P+G+CGAAL ++A  +  + +  ++V +V + E T+ +RL EF +T+SG LT
Sbjct:   234 DWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNEFSSTESGELT 293

Query:   268 IEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF---ACGLCRSCYEEFM 323
             ++ F + + E  H+  +      G K +    +     +T       A GL  S      
Sbjct:   294 VDQFRSVQLENTHDPPSFTRARQGRKPA--RSIKRNAAETAAEIEEDAEGLEESEVPPRR 351

Query:   324 TISEGLEGGADP--PAFQVAERERMVKASA--EENSSFERESDSPFMSRVDKVQSPEPES 379
               ++G      P  PA   A+++    A+    E+S+          +   K+ SP PE 
Sbjct:   352 VDADGFTIPNLPIDPALIQADKDSQSSAAVGGPEDSTAPLAKGRTKGNGRPKLPSPSPEQ 411

Query:   380 IGVPKNCTTQTASNEGEGDHT-KTPGVDATTEASDGSDNFSDIDD--FEVDGYLHN---- 432
             +   +    + +    +G +  ++    AT      SDN  +ID+  F+ D  + N    
Sbjct:   412 VASEEALENEMSEYLAKGSNMIESIECGATRPKKVVSDN-PEIDEAEFDSDPEVSNCLLA 470

Query:   433 EEEKHYKKIIWEEMNREY 450
               E   K+ IW   N++Y
Sbjct:   471 PHEVEIKERIWVHENKDY 488

 Score = 85 (35.0 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 545
             A T  EATRRML ++  S KINY +LE LF +
Sbjct:   541 ASTPAEATRRMLERRGFSKKINYRLLETLFGE 572

 Score = 83 (34.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query:    18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR 67
             D Q  C  CG V+ + N  +E TF ++A+G + + G+FV   Q+ + AS+
Sbjct:    71 DGQKVCSGCGTVVSEANIVSEVTFGESASGAAIVQGSFVGEDQT-HSASK 119


>TAIR|locus:4515102612 [details] [associations]
            symbol:AT1G30455 species:3702 "Arabidopsis thaliana"
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006413
            "translational initiation" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
            InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
            EMBL:CP002684 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
            GO:GO:0006352 GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 UniGene:At.69479
            IPI:IPI00542754 RefSeq:NP_001117389.1 ProteinModelPortal:F4I4V4
            SMR:F4I4V4 EnsemblPlants:AT1G30455.1 GeneID:6240845
            KEGG:ath:AT1G30455 Uniprot:F4I4V4
        Length = 254

 Score = 208 (78.3 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
 Identities = 39/74 (52%), Positives = 55/74 (74%)

Query:   160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
             +LY+ +       VDPS F+ +F+++LL G  NK+V +TA  I+ASMK +W+ TGRKPSG
Sbjct:     1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60

Query:   219 LCGAALYVSALTHG 232
             +CGAALY +AL+HG
Sbjct:    61 ICGAALYTAALSHG 74

 Score = 99 (39.9 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query:   331 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVD 370
             GG+DPP+FQ AE+ERM  KAS EEN   +   +S  +S +D
Sbjct:    74 GGSDPPSFQRAEKERMEEKASTEENDKQQNSDESSTLSDLD 114

 Score = 84 (34.6 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query:   389 QTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNR 448
             Q A  E   +   T   D   + SD S   SD+DD E+D Y  N +E H  +II++  N 
Sbjct:    82 QRAEKERMEEKASTEENDKQ-QNSDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENP 140

Query:   449 EY 450
              Y
Sbjct:   141 GY 142

 Score = 62 (26.9 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query:   510 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 546
             N+ P  TA+EA   M+ +K+     N D LE+L D S
Sbjct:   184 NAPPPATAMEAVDSMVKRKKFPDT-NCDYLEELLDTS 219


>UNIPROTKB|H0YIV6 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
            EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1 Ensembl:ENST00000546417
            Uniprot:H0YIV6
        Length = 185

 Score = 244 (91.0 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
 Identities = 52/111 (46%), Positives = 74/111 (66%)

Query:   172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
             Q DP +++ +F   LL  G K  +V  TA  +L  MKRDW+ TGR+PSGLCGAAL V+A 
Sbjct:    34 QNDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 92

Query:   230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 280
              H  + +  +++ +V +CE+TL KRL EFE+T +  LTI++FM  K +L E
Sbjct:    93 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM--KIDLEE 141

 Score = 53 (23.7 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query:   320 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 373
             +EFM I   LE   DPP++   +R+  +K   +  S    E +    S  D ++
Sbjct:   132 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 183


>UNIPROTKB|F8VS45 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
            EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1 IPI:IPI01021031
            ProteinModelPortal:F8VS45 SMR:F8VS45 Ensembl:ENST00000549655
            ArrayExpress:F8VS45 Bgee:F8VS45 Uniprot:F8VS45
        Length = 237

 Score = 221 (82.9 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query:   197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
             TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +CE+TL KRL 
Sbjct:     2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61

Query:   257 EFENTDSGSLTIEDFMARKKELHE 280
             EFE+T +  LTI++FM  K +L E
Sbjct:    62 EFEDTPTSQLTIDEFM--KIDLEE 83

 Score = 55 (24.4 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query:   320 EEFMTISEGLEGGADPPAFQVAERE-RMVKASAEENSSFER-ESD-SPFMSRVD-KVQSP 375
             +EFM I   LE   DPP++   +R+ RM +     +   E  E + S +   ++ ++++ 
Sbjct:    74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 131

Query:   376 EPESIG----VPKNCTTQ-TASNE-GEGD 398
              P++ G    + K+ +T+ TAS+  GE D
Sbjct:   132 RPKAKGGLASLAKDGSTEDTASSLCGEED 160


>UNIPROTKB|A3KN61 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
            EMBL:AL512355 UniGene:Hs.424484 HGNC:HGNC:11551 ChiTaRS:BRF1
            EMBL:BC133655 IPI:IPI00844553 SMR:A3KN61 STRING:A3KN61
            Ensembl:ENST00000379932 Uniprot:A3KN61
        Length = 184

 Score = 221 (82.9 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query:   197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
             TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +CE+TL KRL 
Sbjct:     2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61

Query:   257 EFENTDSGSLTIEDFMARKKELHE 280
             EFE+T +  LTI++FM  K +L E
Sbjct:    62 EFEDTPTSQLTIDEFM--KIDLEE 83

 Score = 53 (23.7 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query:   320 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 373
             +EFM I   LE   DPP++   +R+  +K   +  S    E +    S  D ++
Sbjct:    74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125


>UNIPROTKB|F8VWT8 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
            IPI:IPI01020829 ProteinModelPortal:F8VWT8 SMR:F8VWT8
            Ensembl:ENST00000552127 ArrayExpress:F8VWT8 Bgee:F8VWT8
            Uniprot:F8VWT8
        Length = 155

 Score = 221 (82.9 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query:   197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
             TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +CE+TL KRL 
Sbjct:     2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61

Query:   257 EFENTDSGSLTIEDFMARKKELHE 280
             EFE+T +  LTI++FM  K +L E
Sbjct:    62 EFEDTPTSQLTIDEFM--KIDLEE 83

 Score = 53 (23.7 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query:   320 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 373
             +EFM I   LE   DPP++   +R+  +K   +  S    E +    S  D ++
Sbjct:    74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125


>UNIPROTKB|Q3SYD7 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
            EMBL:AL512355 UniGene:Hs.424484 HGNC:HGNC:11551 ChiTaRS:BRF1
            EMBL:BC103861 IPI:IPI00651667 SMR:Q3SYD7 STRING:Q3SYD7
            Ensembl:ENST00000551787 Uniprot:Q3SYD7
        Length = 161

 Score = 221 (82.9 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query:   197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
             TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +CE+TL KRL 
Sbjct:     2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61

Query:   257 EFENTDSGSLTIEDFMARKKELHE 280
             EFE+T +  LTI++FM  K +L E
Sbjct:    62 EFEDTPTSQLTIDEFM--KIDLEE 83

 Score = 53 (23.7 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query:   320 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 373
             +EFM I   LE   DPP++   +R+  +K   +  S    E +    S  D ++
Sbjct:    74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125


>UNIPROTKB|I3LCQ3 [details] [associations]
            symbol:BRF1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382 GO:GO:0006355
            GO:GO:0008270 GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10
            InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
            GeneTree:ENSGT00390000010349 Ensembl:ENSSSCT00000031183 OMA:DEICSYQ
            Uniprot:I3LCQ3
        Length = 99

 Score = 218 (81.8 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 42/84 (50%), Positives = 60/84 (71%)

Query:   197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
             TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  +++ +V +CE+TL KRL 
Sbjct:     2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIGVVKVCESTLRKRLT 61

Query:   257 EFENTDSGSLTIEDFMARKKELHE 280
             EFE+T +  LT+++FM  K +L E
Sbjct:    62 EFEDTPTSQLTVDEFM--KIDLEE 83


>UNIPROTKB|F8VXJ4 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
            Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
            PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
            IPI:IPI01021144 ProteinModelPortal:F8VXJ4 SMR:F8VXJ4
            Ensembl:ENST00000550692 ArrayExpress:F8VXJ4 Bgee:F8VXJ4
            Uniprot:F8VXJ4
        Length = 64

 Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query:   103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
             +AV+R+ T+GR+   V A+CLYL CR +  P +L+D S+ L +NVY LG  +L L + L 
Sbjct:     1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60

Query:   163 I 163
             I
Sbjct:    61 I 61


>UNIPROTKB|F8VQ19 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR011665 Pfam:PF07741 GO:GO:0005634
            GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
            PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
            IPI:IPI01021565 Ensembl:ENST00000547562 ArrayExpress:F8VQ19
            Bgee:F8VQ19 Uniprot:F8VQ19
        Length = 281

 Score = 110 (43.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 53/209 (25%), Positives = 83/209 (39%)

Query:   252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
             MK  +E E  D  S T      R K+L + ++  L     ++S   + +    +  +P A
Sbjct:     1 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKA 59

Query:   312 CGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 369
              G   S  ++  T   +  L G  D       E E +  A++  N    RE         
Sbjct:    60 KGGLASLAKDGSTEDTASSLCGEED------TEDEELEAAASHLNKDLYRELLGGAPGSS 113

Query:   370 DKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDI 421
             +   SPE    P ++G   +    TA++ G  D  +    +   D    + DG  + S I
Sbjct:   114 EAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGI 172

Query:   422 DDFEVDGYLHNEEEKHYKKIIWEEMNREY 450
             DD E+D Y+ NE E   K  +W   N EY
Sbjct:   173 DDLEIDRYILNESEARVKAELWMRENAEY 201

 Score = 79 (32.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query:   514 AQTALEATRRMLTKKRLSSKINYDVLEKL 542
             A TA EA  +ML +K++SSKINY VL  L
Sbjct:   238 ASTAREAIEKMLEQKKISSKINYSVLRGL 266


>UNIPROTKB|F1NXP2 [details] [associations]
            symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
            InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
            EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
            Uniprot:F1NXP2
        Length = 306

 Score = 141 (54.7 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 47/194 (24%), Positives = 88/194 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:    98 SSSDRAMMNAFKEITNMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLY 155

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   156 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 210

Query:   185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
              L  G  K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I 
Sbjct:   211 NL--GLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 268

Query:   245 HICEATLMK--RLI 256
              + + T+ +  RLI
Sbjct:   269 GVADVTIRQSYRLI 282


>UNIPROTKB|F2Z5J6 [details] [associations]
            symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0046966 "thyroid hormone receptor binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
            InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
            EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
            Uniprot:F2Z5J6
        Length = 316

 Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 47/195 (24%), Positives = 90/195 (46%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I+ +
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEILSL 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 QGVADVTIRQSYRLI 292


>UNIPROTKB|F8VWY1 [details] [associations]
            symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
            species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
            GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
            Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
            PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
            IPI:IPI01025938 ProteinModelPortal:F8VWY1 SMR:F8VWY1
            Ensembl:ENST00000550208 ArrayExpress:F8VWY1 Bgee:F8VWY1
            Uniprot:F8VWY1
        Length = 45

 Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
             TA  +L  MKRDW+ TGR+PSGLCGAAL V+A  H  + +  ++
Sbjct:     2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEV 45


>UNIPROTKB|F2Z4J6 [details] [associations]
            symbol:LOC786656 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
            OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
            GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
            ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
            Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
        Length = 316

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 AGVADVTIRQSYRLI 292


>UNIPROTKB|E2RPG1 [details] [associations]
            symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
            KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
            GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
            ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
            Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
            NextBio:20855065 Uniprot:E2RPG1
        Length = 316

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 AGVADVTIRQSYRLI 292


>UNIPROTKB|Q00403 [details] [associations]
            symbol:GTF2B "Transcription initiation factor IIB"
            species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
            binding" evidence=IPI] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=TAS] [GO:0006368 "transcription elongation from
            RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
            InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
            GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
            PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
            InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
            EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
            EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
            UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
            PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
            ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
            MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
            PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
            Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
            GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
            PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
            EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
            PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
            Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
        Length = 316

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 AGVADVTIRQSYRLI 292


>MGI|MGI:2385191 [details] [associations]
            symbol:Gtf2b "general transcription factor IIB"
            species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
            receptor binding" evidence=ISO] InterPro:IPR000812
            InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
            GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
            GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
            HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
            CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
            IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
            ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
            PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
            Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
            InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
            Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
        Length = 316

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 AGVADVTIRQSYRLI 292


>RGD|619735 [details] [associations]
            symbol:Gtf2b "general transcription factor IIB" species:10116
            "Rattus norvegicus" [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
            evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
            Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
            eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
            HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
            CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
            GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
            IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
            ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
            PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
            InParanoid:P62916 NextBio:615268 Genevestigator:P62916
            Uniprot:P62916
        Length = 316

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 AGVADVTIRQSYRLI 292


>UNIPROTKB|Q2KIN8 [details] [associations]
            symbol:GTF2B "Transcription initiation factor IIB"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
            GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
            HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
            IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
            ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
            GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
            InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
        Length = 316

 Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  IV      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
              L LP   K+V   A  I        +  GR P  +  AA+Y+++     K ++ +I  I
Sbjct:   221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEIGDI 277

Query:   244 VHICEATLMK--RLI 256
               + + T+ +  RLI
Sbjct:   278 AGVADVTIRQSYRLI 292


>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
            symbol:gtf2b "general transcription factor IIB"
            species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
            binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
            InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
            PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
            KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
            HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
            UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
            GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
            Uniprot:Q7SX98
        Length = 316

 Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 46/196 (23%), Positives = 91/196 (46%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
             +S +R M  AF ++  M + +N+  +  I+      +     +   KGR  + + ++CLY
Sbjct:   108 SSSDRAMLNAFKEITTMADRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165

Query:   125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
             +ACRQ+  P    +      I+  E+G  +  + + L    E++V   +    F+ +F  
Sbjct:   166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220

Query:   185 RLLPGGNKKVCDTARDILA--SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
              L   G  K    A   +A  +++ D +  GR P  +  AA+Y+++     K ++ +I  
Sbjct:   221 NL---GLPKQVQMAATYIARKAVELD-LVPGRSPISVAAAAIYMASQASAEKKTQKEIGD 276

Query:   243 IVHICEATLMK--RLI 256
             I  + + T+ +  RLI
Sbjct:   277 IAGVADVTIRQSYRLI 292


>WB|WBGene00006648 [details] [associations]
            symbol:ttb-1 species:6239 "Caenorhabditis elegans"
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
            GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
            InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
            ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
            EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
            EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
            UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
            GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
            Uniprot:O16991
        Length = 306

 Score = 132 (51.5 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 47/201 (23%), Positives = 88/201 (43%)

Query:    52 SGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
             S N +   Q +   + +R M  A   +R+M   +++  +  I   A R +   +     +
Sbjct:    85 SDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRN--IQDSASRIFKDVLESKALR 142

Query:   112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
             G+  E   A+CLY+ACR+   P    +      ++  E+G  +  + + L    E+N L+
Sbjct:   143 GKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIVRSL----ETN-LE 197

Query:   172 QVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
             Q+  + F+ +F   L LP  N       R    ++  D +  GR P  +  AA+Y+++  
Sbjct:   198 QITSADFMSRFCGNLSLP--NSIQAAATRIAKCAVDMD-LVAGRTPISIAAAAIYMASQA 254

Query:   231 HGLKFSKSDIVKIVHICEATL 251
                K S  +I  +    E T+
Sbjct:   255 SAEKRSAKEIGDVAGAAEITV 275


>TAIR|locus:2076259 [details] [associations]
            symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
            "translational initiation" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=RCA] InterPro:IPR000812
            InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
            ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
            EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
            RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
            SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
            EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
            TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
            Genevestigator:Q9SS44 Uniprot:Q9SS44
        Length = 312

 Score = 105 (42.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 44/205 (21%), Positives = 85/205 (41%)

Query:    52 SGNFVRTIQSEY---GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
             SG+F+ +    +   G++ +R +  AF  +  M + L +  +  I   A   Y     + 
Sbjct:    83 SGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVAT--IKDRANEIYKRVEDQK 140

Query:   109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN-INVYELGAVYLQLCQVLYIADES 167
              ++GR  + + A+CLY+ACRQ+ KP  + +  +  N     E+G     + + L +    
Sbjct:   141 SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ 200

Query:   168 NV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
              V +  +    F+ +F   L  G   +    A++ +   K +     R P  +  A +Y+
Sbjct:   201 LVEMGTIHAGDFMRRFCSNL--GMTNQTVKAAQESV--QKSEEFDIRRSPISIAAAVIYI 256

Query:   227 SALTHGLKFSKSDIVKIVHICEATL 251
                    K    DI     + E T+
Sbjct:   257 ITQLSDEKKPLRDISVATGVAEGTI 281

 Score = 66 (28.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query:     3 WCSSCARH---VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQS 49
             +CS C RH   V  H   D+   C  CG VLE H+   E +  +  A +S
Sbjct:     5 FCSDCKRHTEVVFDHSAGDT--VCSECGLVLESHSID-ETSEWRTFANES 51


>FB|FBgn0004915 [details] [associations]
            symbol:TfIIB "Transcription factor IIB" species:7227
            "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
            [GO:0001174 "transcriptional start site selection at RNA polymerase
            II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0051101
            "regulation of DNA binding" evidence=IDA] [GO:0005667
            "transcription factor complex" evidence=ISS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA]
            InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
            Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
            EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
            GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
            SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
            GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
            EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
            RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
            SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
            STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
            EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
            CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
            OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
            Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
        Length = 315

 Score = 125 (49.1 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 52/209 (24%), Positives = 94/209 (44%)

Query:    65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR-FYGIAVARNFTKGRRTEQVQASCL 123
             +S +R +  AF ++  M + +N+ ++  IV  A   F  +   +N  KGR  +   ++CL
Sbjct:   107 SSSDRSLISAFKEISSMADRINLPKT--IVDRANNLFKQVHDGKNL-KGRSNDAKASACL 163

Query:   124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
             Y+ACRQ+  P    +      I+  E+G  +    + L    E++V   +  + F+ +F 
Sbjct:   164 YIACRQEGVPRTFKEICAVSKISKKEIGRCFKLTLKAL----ETSV-DLITTADFMCRFC 218

Query:   184 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
               L LP     V   A  I        I  GR P  +  AA+Y+++     K S+ +I  
Sbjct:   219 ANLDLPN---MVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGD 275

Query:   243 IVHICEATLMKRLIEFENTDSGSLTIEDF 271
             I  + + T+ ++  +     +  L  EDF
Sbjct:   276 IAGVADVTI-RQSYKLMYPHAAKLFPEDF 303


>TAIR|locus:2062703 [details] [associations]
            symbol:TFIIB "transcription factor IIB" species:3702
            "Arabidopsis thaliana" [GO:0003743 "translation initiation factor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA;ISS] [GO:0006413 "translational initiation"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=RCA] InterPro:IPR000812
            InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
            PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006352 EMBL:AC002510 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
            PROSITE:PS00782 EMBL:U31096 EMBL:AY093060 EMBL:AY128769
            EMBL:AY086647 IPI:IPI00524047 PIR:T00819 RefSeq:NP_181694.1
            UniGene:At.10174 ProteinModelPortal:P48512 SMR:P48512 IntAct:P48512
            STRING:P48512 PaxDb:P48512 PRIDE:P48512 EnsemblPlants:AT2G41630.1
            GeneID:818761 KEGG:ath:AT2G41630 TAIR:At2g41630
            HOGENOM:HOG000108634 InParanoid:P48512 KO:K03124 OMA:WRAFDPD
            PhylomeDB:P48512 ProtClustDB:CLSN2683788 Genevestigator:P48512
            InterPro:IPR023486 Uniprot:P48512
        Length = 312

 Score = 104 (41.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 45/205 (21%), Positives = 84/205 (40%)

Query:    52 SGNFVRTIQSEY---GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
             SG+F+ +    +    ++ +R + +AF  +  M   L +  +  I   A   Y     + 
Sbjct:    83 SGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLGLVAT--IKDRANELYKRLEDQK 140

Query:   109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN-INVYELGAVYLQLCQVLYIADES 167
              ++GR  + + A+CLY+ACRQ+ KP  + +     N     E+G     + + L +    
Sbjct:   141 SSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQ 200

Query:   168 NV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
             +V L  +    F+ +F   L    N  V   A++  A  K +     R P  +    +Y+
Sbjct:   201 SVDLGTIHAGDFMRRFCSNLAMS-NHAV-KAAQE--AVQKSEEFDIRRSPISIAAVVIYI 256

Query:   227 SALTHGLKFSKSDIVKIVHICEATL 251
                    K +  DI     + E T+
Sbjct:   257 ITQLSDDKKTLKDISHATGVAEGTI 281

 Score = 56 (24.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query:     3 WCSSCARH---VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLS 52
             +C+ C +    V  H   D+   C  CG VLE H+   E +  +  A +S  S
Sbjct:     5 YCTDCKKETELVVDHSAGDT--LCSECGLVLESHSID-ETSEWRTFANESSNS 54


>ZFIN|ZDB-GENE-040801-43 [details] [associations]
            symbol:brf2 "BRF2, subunit of RNA polymerase III
            transcription initiation factor, BRF1-like" species:7955 "Danio
            rerio" [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
            Pfam:PF08271 PROSITE:PS51134 ZFIN:ZDB-GENE-040801-43 GO:GO:0006355
            GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
            SMART:SM00385 SUPFAM:SSF47954 GeneTree:ENSGT00390000002288
            OMA:CMLKPPK PANTHER:PTHR11618 EMBL:BX005297 EMBL:CU694484
            EMBL:CU929124 IPI:IPI00630870 Ensembl:ENSDART00000020297
            Bgee:F1QIW1 Uniprot:F1QIW1
        Length = 423

 Score = 112 (44.5 bits), Expect = 0.00068, Sum P(2) = 0.00068
 Identities = 56/258 (21%), Positives = 106/258 (41%)

Query:     4 CSSC--ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
             C  C  +R V        Q  C+ CG V+ +   +T  T  + +   S+    F  T   
Sbjct:     5 CPECGSSRVVEDDLYSQKQWVCEDCGSVVSEGLLTT--TLSEES--HSRAVPFFTSTAAF 60

Query:    62 EYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
             +      R +   F  +R +     +  S  D   ++ +R Y      + +  ++  Q+ 
Sbjct:    61 KKPC---RNLVSGFSRLRALCRIFRLSSSMEDASANLFERAYNHPNFLHISLSKK--QIL 115

Query:   120 ASC-LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
             A C ++  CRQ S P  +      L+ + Y++G +Y +L + L +      + ++  S F
Sbjct:   116 AGCCMFHICRQNSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES-F 174

Query:   179 LHKF------TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT-H 231
              + F       + +     +++ D    +L      WI TGR+P  L  AA+YV+  + +
Sbjct:   175 CYDFKLAPDEVEEVFSVAQQRLVDQTSALLELAADTWILTGRRPFPLFLAAVYVAWQSLN 234

Query:   232 GLKFSKSDIVKIVHICEA 249
              L   K  ++K   I +A
Sbjct:   235 PLARMKYSLMKFCKIAKA 252

 Score = 49 (22.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query:   420 DIDDFEVDGYLHNEEE 435
             DI D E++ Y+ +EEE
Sbjct:   394 DISDSEIESYIRSEEE 409


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      567       518   0.00089  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  43
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  311 KB (2159 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  48.97u 0.18s 49.15t   Elapsed:  00:00:03
  Total cpu time:  48.98u 0.18s 49.16t   Elapsed:  00:00:03
  Start:  Tue May 21 04:43:14 2013   End:  Tue May 21 04:43:17 2013

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