BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008401
(567 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1
PE=1 SV=1
Length = 676
Score = 222 bits (566), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 172/563 (30%), Positives = 264/563 (46%), Gaps = 85/563 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCE 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNN 289
+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 258 STLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEV 317
Query: 290 GPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA 349
++S + + + +P A G + ++ G + + P + E E + A
Sbjct: 318 EGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDATSSPRCEEDTEDEELEAA 373
Query: 350 SAEENSSFERE---SDSPFMSRVDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTK-- 401
++ N F RE D + D P ES+ P TA++ G D +
Sbjct: 374 ASHMNKDFYRELLGDDDGSEAAGDPDGGSRPLALESLLGP----LPTAASLGISDSIREC 429
Query: 402 --TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 459
+P D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 430 ISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEA 489
Query: 460 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 519
A K EL KE + K++ + + A TA E
Sbjct: 490 RIAKEK------------------ELGIY---------KEHKPKKSCKRREPILASTAGE 522
Query: 520 ATRRMLTKKRLSSKINYDVLEKL 542
A +ML +K++SSKINY VL L
Sbjct: 523 AIEKMLEQKKISSKINYSVLRDL 545
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1
PE=1 SV=1
Length = 677
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 171/565 (30%), Positives = 262/565 (46%), Gaps = 88/565 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANL 286
+CE+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKL 314
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 346
++S + + + +P A G S ++ T E A + +
Sbjct: 315 EEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEE 369
Query: 347 VKASAEE-NSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK 401
++A+A N RE + SPE P ++G + TA++ G D +
Sbjct: 370 LEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIR 428
Query: 402 ----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 457
+ D + DG + S IDD E+D Y+ NE E K +W N EYL EQ K
Sbjct: 429 ECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREK 488
Query: 458 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 517
EA A K EL KE + K++ + + A TA
Sbjct: 489 EARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTA 521
Query: 518 LEATRRMLTKKRLSSKINYDVLEKL 542
EA +ML +K++SSKINY VL L
Sbjct: 522 REAIEKMLEQKKISSKINYSVLRGL 546
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1
SV=1
Length = 596
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 409 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 464
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 465 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 519
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 520 ATRRMLTKKRLSSKINYDVLEKLF 543
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>sp|P46070|TF3B_KLULA Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
Length = 556
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 160/274 (58%), Gaps = 17/274 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------TIQSEYG----ASRE 68
++L C CG V E+++ +E TF + + G + + G FV T S G SRE
Sbjct: 29 NELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQAHPTFMSHSGQNALMSRE 88
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ A ++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR
Sbjct: 89 TTLNNARRKLKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACR 146
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L
Sbjct: 147 KERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLEL 202
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G K KV A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+
Sbjct: 203 GDKKIKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVA 262
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEG 281
E TL +RL EF+NT S L++++F + E++EG
Sbjct: 263 EETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 409 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 468
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 469 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 528
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 529 RLSSKINYDVLEKLF 543
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2
Length = 492
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/550 (26%), Positives = 253/550 (46%), Gaps = 109/550 (19%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY---GASRERLME 72
C +CG V+E +E TF + + G + + G+ V RT Y G+ R +
Sbjct: 22 CTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHARTFGGPYRNQGSVESRELT 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A R A+ + ++ + A R++ +A+ NF KGRR++ V ASCLY+ CR
Sbjct: 82 IANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKT 141
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
+LIDFS+ L INV++LG+ +L+LC+VL L +DPS+++ +F L G
Sbjct: 142 SHMLIDFSDILQINVFKLGSTFLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPET 196
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+V + A ++A M RDW+ GR+P+G+CGA L ++A + + S ++V +V + + T+
Sbjct: 197 HRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITI 256
Query: 252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
KRL EF+ T+SG L+I DF
Sbjct: 257 QKRLDEFKLTESGDLSIADF---------------------------------------- 276
Query: 312 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF------ 365
R+ + E G +DPP+F ++ + A N +E SP
Sbjct: 277 ----RNIWLE---------GQSDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDF 323
Query: 366 ---------MSRVDKVQSPE-PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS 415
+S+ KV+S E P + + + + +GD + + + S+
Sbjct: 324 DGNEVKSEELSQTVKVESQETPVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEE 383
Query: 416 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 475
D+DD E++ L +++E K +W E+N++YL E+ AK
Sbjct: 384 VTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAK------------------ 425
Query: 476 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 535
L+ ++L + + +++++ R ++ + G A TA E+ + M+ ++ S KIN
Sbjct: 426 --NLKLQEDL----KKGIVRQPRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKIN 479
Query: 536 YDVLEKLFDD 545
Y+ L+ LFD+
Sbjct: 480 YEALDMLFDE 489
>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=TDS4 PE=3 SV=1
Length = 553
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/598 (25%), Positives = 262/598 (43%), Gaps = 118/598 (19%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CKTC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + ++++ AL I D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTLSNGKRKIKRIAAALKI--PDYIAEAAGEWFRLALTL 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 286
+A + + S ++IV + H+ E TL +RL EF+ T +G+L+++ F +E+ E + ++
Sbjct: 239 AARMNNFRRSHAEIVAVSHVGEETLQRRLNEFKKTKAGTLSVKSF----REV-ENLESSN 293
Query: 287 PNNGPKVSGMN---------------EVLCKHKDTGKPFACG-----------LCRSCYE 320
P + K M E L K + K G L +
Sbjct: 294 PPSFEKNRAMELKISKKLQQQQTDNFEDLSKMTEEEKQSVFGKLSKEEAQKQLLMNTILS 353
Query: 321 EFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPE-- 378
+ +E L D R +K S+ ENS ++ +P+ + +P
Sbjct: 354 DITITTENLNDQMD--------RILKMKKSSLENSLYK----TPYELALANGSEQDPSKI 401
Query: 379 -SIGVPKNCTTQTASNEGEGDHTKTPGVDATTE--ASDGSDNFSDIDDFEVDGYLHNEEE 435
+I PKN P D + +S+ N D D+ ++ L EEE
Sbjct: 402 WNINKPKNLVAN------------LPKTDDILQNVSSEVELNSDDDDEIVLESKL-TEEE 448
Query: 436 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 495
K+ IW +N +YL EQ K Q A EL + + +
Sbjct: 449 VAIKERIWTGLNHDYLVEQEKKRLK-------------------QEADELTGNTSKSSSG 489
Query: 496 SRKEKQQKR-AAEAKN---------SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 543
+R+++ + AE + G ++A ++ + ++K +S KINYD L+ L
Sbjct: 490 NRRKRNKSSLPAELRKELGDIDLDEDGTPRSAADSAKMYISKTSVSKKINYDSLKGLL 547
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILD 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 235 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILD 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 235 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 48/293 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
R +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 237 YRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 48/293 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L+
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLS 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 235 EAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G E+ A Y A++ + GR E V + LY
Sbjct: 134 SKERNLKQALGEIERMASAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ S P + + +N I+ E Y + + L + + DP+ ++ +F
Sbjct: 192 SARQLSTPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASD 246
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LP +V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ ++
Sbjct: 247 LDLP---DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVT 303
Query: 245 HICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 304 DVSEVTIRNRYQEL 317
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 135 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAAC 192
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P L + + Y ++ E+G Y + + L + L P+ ++ +F L
Sbjct: 193 RQAGVPRTLDEIATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL- 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G + +V A +I+ + +T+GR P+G+ AALYV+++ G + ++ ++ ++ +
Sbjct: 247 -GLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVT 305
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 306 EVTIRNRYKEL 316
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 101/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + +V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 279 EIAQVAGVTEVTVRNRYKEL 298
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 279 EIAQVAGVTEVTVRNRYKEL 298
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 17/205 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I D++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERMASNLSI--PDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+L + + + A +IL S + +T+G+ P+G+ AA+Y+++L G + ++ + ++
Sbjct: 231 KLKLSMDTR--NKALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVA 288
Query: 245 HICEATLMKRLIEFENTDSGSLTIE 269
+ E T+ R E T+ L +E
Sbjct: 289 GVTEVTIRNRYKEL--TEKLQLNVE 311
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + I+ E+G Y + Q L + ++ DP +L +F L
Sbjct: 186 RQEGIPRTLEEVTEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V AR+I+ + + +G+ PSG AA+Y ++L K ++ ++ + ++
Sbjct: 240 -ELSEEVIAKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 12/220 (5%)
Query: 42 VKNAAGQSQLSGNFVRTIQS--EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
++++ G+ +RT + + SRER +AF ++ + + L + ES + +A
Sbjct: 87 LRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPES--VRELAAS 144
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQLC 158
Y A +GR E V + ++ AC++ P + + L + + E+ Y L
Sbjct: 145 IYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRAYRVLQ 204
Query: 159 QVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+ L + K +PS L +F +L G ++ V A++I+ K IT G+ P+G
Sbjct: 205 RRLNLKQ-----KPTEPSDHLPRFASKL--GVSENVQAKAQEIIEKAKEKGITVGKGPAG 257
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AALY++++ G + ++ +I ++ + E T+ R E
Sbjct: 258 VAAAALYIASILEGERRTQKEIAEVARVTEVTIRNRYKEI 297
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE 116
+Q+ Y ER + +A ++ ++ + L + +S DE + V Y + KGR E
Sbjct: 139 VQTSY----ERNLVQATHELNRIAHQLGVPKSCMDEALAV----YKQVLKSGLVKGRSVE 190
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
+ A+CL++ACR + P L + S Y E+ + + + L I L DP
Sbjct: 191 AIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIR-----LPLSDPR 245
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
++ K ++L LPG + A +L K +T G+ P+GL AA+Y+++L G
Sbjct: 246 QYVPKIVEQLKLPGD---IAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVR 302
Query: 236 SKSDIVKIVHICEATLMKRLIEF 258
++ +I + + E T+ R E
Sbjct: 303 TQKEIAQAAQVTEVTVRNRYKEL 325
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 17/205 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M A N+ +++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERM--AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+L + + + A +IL + +T+G+ P+G+ AA+Y+++L G + ++ + ++
Sbjct: 231 KLKLSMDTR--NKALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVA 288
Query: 245 HICEATLMKRLIEFENTDSGSLTIE 269
+ E T+ R E T+ L +E
Sbjct: 289 GVTEVTIRNRYKEL--TEKLKLNVE 311
>sp|Q9Y942|TF2B_AERPE Transcription initiation factor IIB OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=tfb PE=3 SV=2
Length = 322
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++ +T G+ P GL GAA+Y++AL HG++ ++ +I +V + E T+ R E
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTIRNRYKEI 303
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 25/241 (10%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
L DH ST A +LS + +Q + +R + A +++ +M
Sbjct: 70 LHDHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRM 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
N LN+ +I A Y AV + +GR E V A+ +Y ACR +P L + +
Sbjct: 130 ANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAK 187
Query: 142 YLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
L +N E+ Y + + L IAD + + ++ ++ L G+ + +
Sbjct: 188 KLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR---------GD--IIEY 236
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I + + E T+ R E
Sbjct: 237 AMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRYKE 296
Query: 258 F 258
Sbjct: 297 I 297
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 261 TDSG 264
D G
Sbjct: 304 LDLG 307
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ + +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 304
Query: 261 TDSG 264
D G
Sbjct: 305 LDMG 308
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 192 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
++V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 247 L--TEEVQSKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 304
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 305 EVTIRNRYQE 314
>sp|B1YCX0|TF2B_PYRNV Transcription initiation factor IIB OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1
Length = 333
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP++
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPTL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>sp|Q8ZWS3|TF2B_PYRAE Transcription initiation factor IIB OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=tfb PE=3 SV=1
Length = 333
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++A+ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPIL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 7/177 (3%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G + + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEAQSRAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKEL 300
>sp|A1RV37|TF2B_PYRIL Transcription initiation factor IIB OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1
Length = 333
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA +IL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIEILQKAKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEFENT 261
D + E T+ R E T
Sbjct: 302 KDFAVAAGVTEVTVRNRYKELAKT 325
>sp|A4WMA6|TF2B_PYRAR Transcription initiation factor IIB OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1
Length = 333
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>sp|Q58192|TF2B_METJA Transcription initiation factor IIB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=tfb PE=3 SV=1
Length = 673
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 567
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 568 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 663
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL G D + A Y A+ + GR E V SC+Y
Sbjct: 127 AKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYA 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + + DP ++ +F
Sbjct: 185 AARQAGVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASD 239
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR++L + K + +G+ P GL AA+Y +AL K +++ + ++
Sbjct: 240 L--GLSDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVAD 297
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E+T
Sbjct: 298 ISEVTIRNRYHELLEAEDT 316
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 256 LKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 313
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 314 EVTIRNRYKEL 324
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 256 LKG--EVQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 313
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 314 EVTIRNRYKEL 324
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R P L + ++ EL Y + + L + +K DP ++ +F
Sbjct: 197 SARMAGTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L K I +G+ P GL AA+Y +AL K ++S++ +
Sbjct: 252 L--GLSDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVAD 309
Query: 246 ICEATLMKRLIEFENTDSGSL 266
I E T+ R E G+L
Sbjct: 310 ISEVTIRNRYKELLEVQDGTL 330
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 258 NLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGV 315
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 316 TEVTIRNRYKEL 327
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG---NFVRTIQSEYGASR-----ERLMEKAFDDMRQ 80
++ D ST+ + +Q++G N +R ++ R ER + A ++ +
Sbjct: 68 MIHDKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDR 127
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M L + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 128 MAAQLRL--PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 185
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ ++ E+G Y + + L + L+ P ++ +F D L G + + A++
Sbjct: 186 SVSKVSKKEIGRSYRFMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKE 238
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
IL + IT+G+ P+GL AALY++AL G K ++ ++ ++ H+ E T+ R E
Sbjct: 239 ILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKEL 324
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 246 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 297
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + I+ + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITNMSDRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E+NV + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G K+V A I + GR P + AA+Y+++ K ++ +I I
Sbjct: 221 NL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 278
Query: 245 HICEATLMK--RLI 256
+ + T+ + RLI
Sbjct: 279 GVADVTIRQSYRLI 292
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS--------EYGASRERLMEKAFDDMRQ 80
++ D ST + A + LSG R +Q S+ER +++A ++ +
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +A G D + A Y A+ + GR E V S LY A RQ + P L + +
Sbjct: 149 MASAF--GLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEVA 206
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ ++ E+ Y Y+A E ++ + DP+ ++ +F L G+ V AR
Sbjct: 207 SVSRVDRGEIARTYR------YVARELSLEVAPTDPASYVPRFCSDLELSGD--VERRAR 258
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
D+LA+ IT+G+ P GL A++Y +AL + +++++ + ++ E T+ R E
Sbjct: 259 DLLAAAADAGITSGKSPVGLAAASVYAAALLTNERVTQNEVSTVANVSEVTIRNRYHEI 317
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I + Y AV +N +GR E + + +Y ACR+ + P L + + +N
Sbjct: 139 LGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAKASEVN 198
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + L+ P ++ +F ++L +K+ + DI+
Sbjct: 199 KKKIGKAYRHLAKELDLN-----LRPTTPFSYIAQFCNKL--DLDKQAIVISEDIVRQAM 251
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 252 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 303
>sp|Q9HHH8|TF2B5_HALSA Transcription initiation factor IIB 5 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbE PE=3
SV=1
Length = 307
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ + +++ER + ++R++ +AL G +D + A + + A KGR E +
Sbjct: 113 RGRWRSTKERNLGHGLTEIRRIASAL--GLADSVRDQACQLFRTAQNERLLKGRSIEAMA 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ ++ ACR + +L+ D + + + Y L + L + P + L
Sbjct: 171 AASVFGACRCNGESWLIDDVAPMAQVGQNRVENAYTVLNEELGLPT---------PPVSL 221
Query: 180 HKFTDRLLP--GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+F RL G V A +++ ITTG PSG A LY++A H ++
Sbjct: 222 DQFVPRLASDLGCTDVVRRRAEELVVQAVDAGITTGVHPSGFAAACLYMAACVHDAPLTQ 281
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L LP K+V A I + GR P + AA+Y+++ K ++ +I I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277
Query: 244 VHICEATLMK--RLI 256
+ + T+ + RLI
Sbjct: 278 AGVADVTIRQSYRLI 292
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L LP K+V A I + GR P + AA+Y+++ K ++ +I I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI 277
Query: 244 VHICEATLMK--RLI 256
+ + T+ + RLI
Sbjct: 278 AGVADVTIRQSYRLI 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,438,333
Number of Sequences: 539616
Number of extensions: 8549533
Number of successful extensions: 36732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 34945
Number of HSP's gapped (non-prelim): 1387
length of query: 567
length of database: 191,569,459
effective HSP length: 123
effective length of query: 444
effective length of database: 125,196,691
effective search space: 55587330804
effective search space used: 55587330804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)