Query 008401
Match_columns 567
No_of_seqs 267 out of 1158
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 01:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 9E-57 3.1E-61 471.7 9.9 264 3-271 23-328 (345)
2 3k7a_M Transcription initiatio 100.0 8.1E-55 2.8E-59 457.5 7.2 262 2-273 22-330 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 5.6E-40 1.9E-44 318.9 23.8 190 64-260 2-191 (200)
4 1c9b_A General transcription f 100.0 4.7E-37 1.6E-41 300.0 19.8 195 68-272 2-196 (207)
5 1zp2_A RNA polymerase II holoe 99.9 1E-22 3.5E-27 202.4 19.4 180 71-260 28-216 (235)
6 2i53_A Cyclin K; cell cycle, t 99.8 1.6E-19 5.6E-24 181.3 20.8 182 72-260 42-247 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.8 8.3E-19 2.8E-23 176.3 22.6 187 66-261 25-237 (257)
8 3rgf_B Cyclin-C; protein kinas 99.8 5.3E-18 1.8E-22 173.3 21.3 184 65-259 36-237 (285)
9 2b9r_A Human cyclin B1; cell c 99.8 3.4E-18 1.2E-22 173.3 18.9 178 73-259 40-220 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.8 2E-17 6.8E-22 166.7 19.9 180 73-260 41-224 (260)
11 2pk2_A Cyclin-T1, protein TAT; 99.8 4.2E-18 1.4E-22 179.4 14.0 187 67-262 33-245 (358)
12 2w96_A G1/S-specific cyclin-D1 99.7 7.1E-17 2.4E-21 163.6 19.0 179 73-260 59-253 (271)
13 1jkw_A Cyclin H; cell cycle, c 99.7 2.2E-16 7.5E-21 164.1 20.7 166 64-236 49-229 (323)
14 1ngm_B Transcription factor II 99.7 1.6E-18 5.6E-23 138.8 2.5 52 409-460 19-70 (72)
15 2f2c_A Cyclin homolog, V-cycli 99.7 3.4E-15 1.2E-19 149.9 22.4 180 73-259 54-243 (254)
16 1g3n_C V-cyclin; cyclin-depend 99.7 1.2E-15 4E-20 153.5 18.7 180 73-259 53-243 (257)
17 1w98_B Cyclin E, G1/S-specific 99.6 1E-14 3.5E-19 148.8 20.0 173 73-259 52-237 (283)
18 3g33_B CCND3 protein; Ser/Thr 99.6 9E-14 3.1E-18 143.4 21.4 181 72-259 72-262 (306)
19 1ais_B TFB TFIIB, protein (tra 99.3 3.3E-12 1.1E-16 123.3 11.6 92 74-167 108-199 (200)
20 1dl6_A Transcription factor II 99.2 1.2E-11 4.1E-16 96.3 4.0 45 2-46 12-56 (58)
21 1c9b_A General transcription f 99.1 2.5E-10 8.5E-15 110.7 11.5 91 74-166 102-192 (207)
22 1pft_A TFIIB, PFTFIIBN; N-term 99.0 3.4E-10 1.2E-14 85.4 4.4 44 2-45 6-49 (50)
23 1f5q_B Gamma herpesvirus cycli 99.0 2.9E-08 9.9E-13 99.5 19.1 178 73-259 51-237 (252)
24 3k1f_M Transcription initiatio 98.9 4E-10 1.4E-14 104.6 2.4 43 3-45 23-67 (197)
25 4bbr_M Transcription initiatio 98.8 7.2E-10 2.5E-14 116.0 0.0 89 73-163 234-322 (345)
26 3k7a_M Transcription initiatio 98.5 1.1E-08 3.9E-13 106.9 0.0 87 74-162 235-321 (345)
27 1zp2_A RNA polymerase II holoe 97.3 0.0011 3.9E-08 65.0 10.9 67 176-244 32-99 (235)
28 3h4c_A Transcription factor TF 97.3 0.0031 1.1E-07 60.1 13.0 88 74-164 15-105 (260)
29 2b9r_A Human cyclin B1; cell c 96.8 0.0021 7E-08 64.5 8.0 87 74-162 138-224 (269)
30 2cch_B Cyclin A2, cyclin-A; co 96.8 0.0034 1.2E-07 62.5 9.3 88 74-163 139-228 (260)
31 2ivx_A Cyclin-T2; transcriptio 96.6 0.0071 2.4E-07 59.9 9.6 69 176-246 35-103 (257)
32 3rgf_B Cyclin-C; protein kinas 96.5 0.0066 2.2E-07 61.4 9.2 86 74-163 157-242 (285)
33 2w96_A G1/S-specific cyclin-D1 96.4 0.0077 2.6E-07 60.3 8.9 91 74-166 157-260 (271)
34 1jkw_A Cyclin H; cell cycle, c 96.4 0.013 4.6E-07 60.2 10.9 71 177-247 62-132 (323)
35 2i53_A Cyclin K; cell cycle, t 96.3 0.013 4.5E-07 57.9 9.8 68 176-245 45-112 (258)
36 3m03_A ORC6, origin recognitio 96.3 0.027 9.3E-07 47.6 9.7 80 78-161 6-91 (95)
37 2pk2_A Cyclin-T1, protein TAT; 96.1 0.011 3.7E-07 61.9 7.9 68 176-245 42-109 (358)
38 2f2c_A Cyclin homolog, V-cycli 96.0 0.024 8.1E-07 56.1 9.7 86 75-162 153-247 (254)
39 1g3n_C V-cyclin; cyclin-depend 95.7 0.025 8.7E-07 56.0 8.4 87 74-162 151-247 (257)
40 1qxf_A GR2, 30S ribosomal prot 95.3 0.0064 2.2E-07 47.7 1.9 47 2-59 8-54 (66)
41 4ell_A Retinoblastoma-associat 95.2 0.051 1.7E-06 57.6 9.0 73 71-144 279-353 (411)
42 2r7g_A PP110, retinoblastoma-a 95.0 0.07 2.4E-06 55.4 9.1 74 70-144 214-289 (347)
43 3j20_W 30S ribosomal protein S 95.0 0.0088 3E-07 46.6 1.8 45 2-57 16-60 (63)
44 2xzm_6 RPS27E; ribosome, trans 94.8 0.01 3.5E-07 48.5 1.7 31 2-32 33-63 (81)
45 3u5c_b RP61, YS20, 40S ribosom 94.5 0.013 4.4E-07 47.9 1.7 31 2-32 35-65 (82)
46 4elj_A Retinoblastoma-associat 94.4 0.11 3.7E-06 58.1 9.4 74 70-144 523-598 (656)
47 3g33_B CCND3 protein; Ser/Thr 94.3 0.13 4.5E-06 52.3 9.2 89 75-163 172-267 (306)
48 2qdj_A Retinoblastoma-associat 94.2 0.13 4.6E-06 52.4 9.0 72 77-151 5-81 (304)
49 3iz6_X 40S ribosomal protein S 94.1 0.014 4.9E-07 48.0 1.2 31 2-32 37-67 (86)
50 1w98_B Cyclin E, G1/S-specific 93.9 0.17 5.9E-06 50.8 9.1 95 177-273 55-156 (283)
51 2js4_A UPF0434 protein BB2007; 93.7 0.035 1.2E-06 44.4 2.7 28 2-30 9-36 (70)
52 2pk7_A Uncharacterized protein 93.6 0.041 1.4E-06 43.9 2.9 28 2-30 9-36 (69)
53 2jr6_A UPF0434 protein NMA0874 93.4 0.041 1.4E-06 43.8 2.6 28 2-30 9-36 (68)
54 2jny_A Uncharacterized BCR; st 93.2 0.05 1.7E-06 43.1 2.9 28 2-30 11-38 (67)
55 1vq8_Z 50S ribosomal protein L 93.1 0.037 1.3E-06 45.7 2.1 32 3-35 29-60 (83)
56 2hf1_A Tetraacyldisaccharide-1 93.0 0.048 1.6E-06 43.3 2.6 28 2-30 9-36 (68)
57 3j20_Y 30S ribosomal protein S 92.5 0.072 2.5E-06 39.7 2.7 27 3-30 21-47 (50)
58 3m03_A ORC6, origin recognitio 90.6 1.2 3.9E-05 37.6 8.4 76 179-258 6-87 (95)
59 2k4x_A 30S ribosomal protein S 90.3 0.15 5.2E-06 38.7 2.6 28 1-29 18-45 (55)
60 3mn2_A Probable ARAC family tr 88.2 8.5 0.00029 31.9 12.5 100 118-274 4-105 (108)
61 2jt1_A PEFI protein; solution 87.7 0.34 1.2E-05 39.3 3.1 28 232-259 22-49 (77)
62 3oou_A LIN2118 protein; protei 87.7 11 0.00037 31.3 12.9 100 117-274 6-106 (108)
63 4elj_A Retinoblastoma-associat 87.7 2 6.7E-05 48.1 10.2 71 77-150 7-82 (656)
64 1tc3_C Protein (TC3 transposas 86.7 0.32 1.1E-05 34.1 2.2 28 233-260 20-47 (51)
65 3lsg_A Two-component response 86.5 11 0.00039 30.9 12.2 98 118-272 4-102 (103)
66 2pmi_B PHO85 cyclin PHO80, ami 85.1 10 0.00035 38.2 13.0 105 74-186 77-185 (293)
67 1qyp_A RNA polymerase II; tran 84.0 0.49 1.7E-05 35.9 2.1 31 2-32 16-55 (57)
68 2akl_A PHNA-like protein PA012 81.5 0.8 2.8E-05 40.6 2.8 27 3-31 29-55 (138)
69 3h0g_I DNA-directed RNA polyme 79.7 1.2 4.1E-05 38.6 3.3 31 1-31 4-37 (113)
70 2k5r_A Uncharacterized protein 79.4 0.83 2.9E-05 38.7 2.1 13 18-30 51-63 (97)
71 2kpi_A Uncharacterized protein 78.3 1.3 4.4E-05 33.7 2.7 25 3-30 12-38 (56)
72 3j21_i 50S ribosomal protein L 77.8 1.1 3.7E-05 36.8 2.3 32 3-35 37-68 (83)
73 2x48_A CAG38821; archeal virus 77.3 0.79 2.7E-05 33.6 1.2 24 233-256 30-53 (55)
74 2apo_B Ribosome biogenesis pro 77.0 0.68 2.3E-05 35.8 0.8 24 1-31 6-29 (60)
75 1k81_A EIF-2-beta, probable tr 77.0 0.94 3.2E-05 31.2 1.4 29 2-30 1-31 (36)
76 3iz5_m 60S ribosomal protein L 76.8 1.3 4.4E-05 37.1 2.5 31 3-34 38-68 (92)
77 3i4p_A Transcriptional regulat 76.4 2.7 9.4E-05 38.1 4.9 36 228-263 11-46 (162)
78 1nui_A DNA primase/helicase; z 76.3 1.2 4.1E-05 43.6 2.6 26 3-29 16-42 (255)
79 2lnb_A Z-DNA-binding protein 1 75.6 3.5 0.00012 33.4 4.6 45 122-166 23-67 (80)
80 3jyw_9 60S ribosomal protein L 74.7 1.5 5.2E-05 35.0 2.3 32 3-35 28-59 (72)
81 1t6s_A Conserved hypothetical 74.0 8.7 0.0003 35.4 7.6 107 117-258 10-129 (162)
82 3cc2_Z 50S ribosomal protein L 74.0 1.2 4.2E-05 38.7 1.7 32 3-35 62-93 (116)
83 1twf_I B12.6, DNA-directed RNA 73.8 1.3 4.4E-05 39.0 1.8 31 1-31 4-37 (122)
84 1twf_L ABC10-alpha, DNA-direct 73.3 1.2 4E-05 35.5 1.3 27 3-31 30-57 (70)
85 3izc_m 60S ribosomal protein R 73.2 1.7 5.7E-05 36.4 2.3 32 3-35 38-69 (92)
86 1ffk_W Ribosomal protein L37AE 72.9 1.5 5.1E-05 35.2 1.8 32 3-35 29-60 (73)
87 2qdj_A Retinoblastoma-associat 72.2 16 0.00054 37.0 9.7 93 180-281 7-103 (304)
88 4a17_Y RPL37A, 60S ribosomal p 71.5 1.6 5.5E-05 37.2 1.8 31 3-34 38-68 (103)
89 2e1c_A Putative HTH-type trans 71.0 3.8 0.00013 37.7 4.5 31 232-262 39-69 (171)
90 1qbj_A Protein (double-strande 70.4 3.7 0.00013 33.4 3.7 28 232-259 25-52 (81)
91 1qgp_A Protein (double strande 70.3 3.8 0.00013 32.8 3.8 27 233-259 30-56 (77)
92 3qt1_I DNA-directed RNA polyme 70.1 2.3 8E-05 38.0 2.7 30 1-30 24-56 (133)
93 2cyy_A Putative HTH-type trans 70.1 4.3 0.00015 36.1 4.5 31 232-262 19-49 (151)
94 3lsg_A Two-component response 70.0 13 0.00046 30.4 7.3 49 222-275 7-55 (103)
95 2cg4_A Regulatory protein ASNC 69.6 4.5 0.00015 36.0 4.6 30 231-260 19-48 (152)
96 1dxg_A Desulforedoxin; non-hem 69.2 1.9 6.5E-05 29.6 1.5 21 3-23 8-28 (36)
97 2pn6_A ST1022, 150AA long hypo 69.1 5.1 0.00017 35.5 4.8 32 231-262 14-45 (150)
98 2dbb_A Putative HTH-type trans 68.6 4.8 0.00016 35.7 4.5 30 231-260 20-49 (151)
99 1tfi_A Transcriptional elongat 68.6 2 6.7E-05 31.8 1.5 28 2-29 10-46 (50)
100 3h4c_A Transcription factor TF 68.5 13 0.00043 35.6 7.4 68 191-259 29-99 (260)
101 2cfx_A HTH-type transcriptiona 68.3 4.9 0.00017 35.5 4.5 30 232-261 17-46 (144)
102 2jpc_A SSRB; DNA binding prote 68.2 3.7 0.00013 30.4 3.1 27 233-259 12-38 (61)
103 2r7g_A PP110, retinoblastoma-a 68.1 46 0.0016 34.3 12.2 125 116-242 105-286 (347)
104 2p5v_A Transcriptional regulat 67.9 5 0.00017 36.2 4.5 30 232-261 22-51 (162)
105 3oou_A LIN2118 protein; protei 67.6 14 0.00048 30.6 7.0 51 219-275 7-57 (108)
106 1f5q_B Gamma herpesvirus cycli 67.6 30 0.001 33.8 10.4 84 74-162 149-241 (252)
107 3gbg_A TCP pilus virulence reg 67.3 44 0.0015 32.0 11.7 106 110-274 163-269 (276)
108 1i1g_A Transcriptional regulat 67.2 5.5 0.00019 34.7 4.5 31 231-261 15-45 (141)
109 2k9s_A Arabinose operon regula 67.2 14 0.00047 30.6 6.9 52 219-275 5-56 (107)
110 2p5k_A Arginine repressor; DNA 67.0 8.1 0.00028 28.7 4.9 28 232-259 17-49 (64)
111 3pvv_A Chromosomal replication 66.5 16 0.00054 30.9 7.0 52 110-163 27-80 (101)
112 2ia0_A Putative HTH-type trans 66.4 5.5 0.00019 36.6 4.5 31 231-261 28-58 (171)
113 1jko_C HIN recombinase, DNA-in 66.2 0.87 3E-05 32.3 -0.8 25 235-259 22-46 (52)
114 2htj_A P fimbrial regulatory p 65.9 6.9 0.00024 31.0 4.5 27 233-259 13-39 (81)
115 1gh9_A 8.3 kDa protein (gene M 65.3 2.1 7.3E-05 34.1 1.2 28 2-32 5-32 (71)
116 1uxc_A FRUR (1-57), fructose r 64.9 4.6 0.00016 31.3 3.1 22 235-256 1-22 (65)
117 1je8_A Nitrate/nitrite respons 64.8 6.5 0.00022 31.4 4.2 27 233-259 35-61 (82)
118 2aus_D NOP10, ribosome biogene 64.8 1.8 6.2E-05 33.3 0.7 24 1-31 5-28 (60)
119 1fse_A GERE; helix-turn-helix 64.6 6.9 0.00023 29.8 4.2 27 233-259 25-51 (74)
120 3lwf_A LIN1550 protein, putati 64.6 7.3 0.00025 35.6 4.9 47 114-160 25-71 (159)
121 2w25_A Probable transcriptiona 64.3 6.6 0.00022 34.8 4.5 30 232-261 19-48 (150)
122 2z99_A Putative uncharacterize 64.1 9 0.00031 37.0 5.6 43 116-162 17-59 (219)
123 1xn7_A Hypothetical protein YH 63.3 5.7 0.00019 32.0 3.5 28 232-259 14-41 (78)
124 6rxn_A Rubredoxin; electron tr 62.5 2.8 9.5E-05 30.5 1.3 23 3-28 6-38 (46)
125 3j21_g 50S ribosomal protein L 62.0 2.5 8.6E-05 31.5 1.0 22 3-29 16-37 (51)
126 3e6c_C CPRK, cyclic nucleotide 61.9 21 0.00072 33.7 8.0 30 233-262 176-205 (250)
127 1x3u_A Transcriptional regulat 61.9 8.1 0.00028 30.0 4.2 27 233-259 30-56 (79)
128 2w48_A Sorbitol operon regulat 61.7 7.3 0.00025 39.2 4.8 33 229-261 16-48 (315)
129 2heo_A Z-DNA binding protein 1 61.7 7.8 0.00027 29.9 3.9 30 231-260 22-51 (67)
130 3mn2_A Probable ARAC family tr 61.2 22 0.00077 29.2 7.1 51 219-275 4-54 (108)
131 2p7v_B Sigma-70, RNA polymeras 61.2 10 0.00036 28.8 4.6 27 233-259 24-50 (68)
132 1jhg_A Trp operon repressor; c 61.0 5.9 0.0002 33.7 3.3 27 233-259 57-83 (101)
133 1oyi_A Double-stranded RNA-bin 60.5 6.2 0.00021 32.2 3.2 25 235-259 31-55 (82)
134 2o8x_A Probable RNA polymerase 60.0 10 0.00034 28.5 4.3 27 233-259 30-56 (70)
135 3hug_A RNA polymerase sigma fa 58.7 10 0.00034 30.8 4.3 27 233-259 52-78 (92)
136 1wii_A Hypothetical UPF0222 pr 58.6 3.8 0.00013 33.8 1.6 30 3-32 25-59 (85)
137 1q1h_A TFE, transcription fact 58.1 10 0.00035 31.6 4.4 29 231-259 30-58 (110)
138 2k9s_A Arabinose operon regula 57.8 16 0.00055 30.2 5.6 99 118-273 5-104 (107)
139 1tty_A Sigma-A, RNA polymerase 57.2 8 0.00027 31.1 3.4 27 233-259 37-63 (87)
140 3t8r_A Staphylococcus aureus C 57.2 9.1 0.00031 34.1 4.1 45 116-160 11-55 (143)
141 1ku3_A Sigma factor SIGA; heli 57.1 10 0.00036 29.2 4.0 26 233-258 29-54 (73)
142 3c57_A Two component transcrip 56.8 8.1 0.00028 31.7 3.4 27 233-259 41-67 (95)
143 2d1h_A ST1889, 109AA long hypo 56.7 9.6 0.00033 30.9 3.9 28 232-259 34-61 (109)
144 1j5y_A Transcriptional regulat 56.4 12 0.0004 34.7 4.9 29 232-260 34-62 (187)
145 3b02_A Transcriptional regulat 56.2 18 0.00061 32.7 6.1 29 233-261 138-166 (195)
146 4rxn_A Rubredoxin; electron tr 56.2 5 0.00017 30.2 1.8 7 22-28 38-44 (54)
147 2ct7_A Ring finger protein 31; 55.7 5.8 0.0002 32.3 2.3 27 3-30 27-53 (86)
148 2y75_A HTH-type transcriptiona 55.5 14 0.00047 31.8 4.9 44 117-160 10-53 (129)
149 3cuo_A Uncharacterized HTH-typ 55.5 12 0.0004 30.1 4.2 30 231-260 35-64 (99)
150 2k02_A Ferrous iron transport 55.4 7.8 0.00027 32.0 3.0 28 232-259 14-41 (87)
151 1e8j_A Rubredoxin; iron-sulfur 55.4 4.6 0.00016 30.1 1.5 10 22-31 5-14 (52)
152 3u50_C Telomerase-associated p 55.4 6 0.00021 36.8 2.6 25 3-29 44-68 (172)
153 3la7_A Global nitrogen regulat 55.2 23 0.00078 33.4 6.9 30 232-261 191-220 (243)
154 3o9x_A Uncharacterized HTH-typ 55.1 5 0.00017 34.8 2.0 31 2-32 3-48 (133)
155 3ulq_B Transcriptional regulat 55.0 9.1 0.00031 31.3 3.4 27 233-259 43-69 (90)
156 3oio_A Transcriptional regulat 54.9 21 0.0007 29.8 5.8 51 219-275 9-59 (113)
157 3jth_A Transcription activator 54.6 12 0.0004 30.4 4.1 28 233-260 35-62 (98)
158 2rnj_A Response regulator prot 54.4 8.2 0.00028 31.2 3.1 27 233-259 43-69 (91)
159 3dv8_A Transcriptional regulat 54.3 20 0.00068 32.8 6.2 30 233-262 168-197 (220)
160 2l8n_A Transcriptional repress 53.6 8 0.00027 30.0 2.7 23 234-256 9-31 (67)
161 2qwt_A Transcriptional regulat 53.4 15 0.0005 33.2 5.0 37 219-256 18-54 (196)
162 3r0a_A Putative transcriptiona 53.3 14 0.00049 31.7 4.6 36 224-259 31-67 (123)
163 1zx4_A P1 PARB, plasmid partit 53.0 12 0.0004 35.5 4.3 27 232-258 22-48 (192)
164 2x4h_A Hypothetical protein SS 52.9 25 0.00084 30.2 6.2 31 231-261 28-58 (139)
165 1ylf_A RRF2 family protein; st 52.6 12 0.00041 33.4 4.1 46 114-160 12-57 (149)
166 3b73_A PHIH1 repressor-like pr 52.5 13 0.00043 32.0 4.0 28 234-261 27-56 (111)
167 3ga8_A HTH-type transcriptiona 52.4 5.6 0.00019 31.8 1.7 11 2-12 3-13 (78)
168 3k2z_A LEXA repressor; winged 52.3 14 0.00049 34.3 4.8 32 229-260 19-50 (196)
169 2fmy_A COOA, carbon monoxide o 52.3 23 0.00079 32.5 6.3 29 233-261 166-194 (220)
170 3mkl_A HTH-type transcriptiona 52.0 33 0.0011 28.8 6.8 85 78-187 26-113 (120)
171 2w7n_A TRFB transcriptional re 51.9 18 0.00062 30.6 4.8 34 226-259 26-59 (101)
172 2gau_A Transcriptional regulat 51.6 27 0.00093 32.3 6.7 29 233-261 179-207 (232)
173 1gnf_A Transcription factor GA 51.2 5.7 0.00019 28.9 1.4 27 3-29 6-34 (46)
174 2jt1_A PEFI protein; solution 51.1 21 0.00072 28.5 4.9 33 131-163 22-54 (77)
175 1vk6_A NADH pyrophosphatase; 1 51.0 7.9 0.00027 38.4 2.9 32 1-33 107-138 (269)
176 3pqk_A Biofilm growth-associat 51.0 13 0.00043 30.5 3.8 28 233-260 35-62 (102)
177 1twf_I B12.6, DNA-directed RNA 51.0 11 0.00039 32.8 3.6 33 2-34 73-114 (122)
178 3cng_A Nudix hydrolase; struct 50.7 8.5 0.00029 35.4 2.9 30 1-30 3-35 (189)
179 2nnn_A Probable transcriptiona 49.7 40 0.0014 28.3 7.0 26 234-259 52-77 (140)
180 2heo_A Z-DNA binding protein 1 49.6 25 0.00084 27.0 5.0 33 128-160 20-52 (67)
181 3mkl_A HTH-type transcriptiona 49.4 27 0.00091 29.5 5.7 52 217-275 7-58 (120)
182 1rp3_A RNA polymerase sigma fa 49.2 1.6E+02 0.0054 26.9 13.1 27 232-258 201-227 (239)
183 2g2k_A EIF-5, eukaryotic trans 49.2 7.2 0.00025 36.2 2.1 28 2-29 97-128 (170)
184 2b0l_A GTP-sensing transcripti 49.2 9 0.00031 32.2 2.5 29 232-260 40-69 (102)
185 3fx3_A Cyclic nucleotide-bindi 48.9 32 0.0011 31.8 6.8 31 232-262 176-206 (237)
186 1j1v_A Chromosomal replication 48.7 39 0.0013 27.9 6.4 52 110-163 23-77 (94)
187 1bl0_A Protein (multiple antib 48.5 33 0.0011 29.3 6.3 53 217-275 11-63 (129)
188 2pg4_A Uncharacterized protein 48.4 25 0.00085 28.3 5.2 31 230-260 26-57 (95)
189 3v2d_5 50S ribosomal protein L 48.3 4.8 0.00016 31.0 0.6 23 2-30 31-53 (60)
190 1sfx_A Conserved hypothetical 48.2 15 0.00051 29.7 3.7 27 233-259 33-59 (109)
191 2l0k_A Stage III sporulation p 48.1 9.4 0.00032 31.8 2.4 23 235-257 21-43 (93)
192 3oio_A Transcriptional regulat 47.7 37 0.0013 28.2 6.3 71 78-157 26-97 (113)
193 3ryp_A Catabolite gene activat 47.4 21 0.00071 32.4 5.0 29 233-261 166-194 (210)
194 2hr3_A Probable transcriptiona 47.3 63 0.0022 27.4 8.0 29 232-260 48-76 (147)
195 3lwf_A LIN1550 protein, putati 47.3 22 0.00074 32.4 5.0 39 222-260 32-70 (159)
196 4esj_A Type-2 restriction enzy 47.2 9.2 0.00031 37.3 2.5 29 2-30 35-66 (257)
197 2oz6_A Virulence factor regula 47.2 21 0.00072 32.3 5.0 29 233-261 163-191 (207)
198 4ham_A LMO2241 protein; struct 47.1 12 0.0004 32.8 3.1 29 231-259 34-63 (134)
199 1y0u_A Arsenical resistance op 47.0 19 0.00065 29.2 4.2 28 233-260 42-69 (96)
200 3la7_A Global nitrogen regulat 46.6 46 0.0016 31.2 7.5 30 132-161 192-221 (243)
201 3e6c_C CPRK, cyclic nucleotide 46.3 66 0.0023 30.1 8.6 49 113-161 147-205 (250)
202 1l9z_H Sigma factor SIGA; heli 46.1 2.9E+02 0.0099 29.1 19.1 25 233-257 394-418 (438)
203 2y75_A HTH-type transcriptiona 46.0 23 0.00079 30.3 4.8 36 225-260 17-52 (129)
204 3d0s_A Transcriptional regulat 45.9 32 0.0011 31.6 6.2 29 233-261 176-204 (227)
205 2vut_I AREA, nitrogen regulato 45.6 7.1 0.00024 27.9 1.1 27 3-29 3-31 (43)
206 3e97_A Transcriptional regulat 45.6 25 0.00086 32.5 5.4 29 233-261 174-202 (231)
207 2zcw_A TTHA1359, transcription 45.5 23 0.00079 32.1 5.0 30 233-262 145-174 (202)
208 1zyb_A Transcription regulator 45.2 27 0.00092 32.5 5.6 29 233-261 185-213 (232)
209 2hzt_A Putative HTH-type trans 45.0 26 0.00088 29.1 4.8 29 232-260 25-54 (107)
210 1uly_A Hypothetical protein PH 44.8 21 0.00071 33.4 4.6 29 233-261 32-60 (192)
211 4gat_A Nitrogen regulatory pro 44.5 6.9 0.00024 30.7 1.0 29 3-31 11-41 (66)
212 1ug2_A 2610100B20RIK gene prod 44.5 40 0.0014 28.0 5.6 41 122-162 43-85 (95)
213 3mzy_A RNA polymerase sigma-H 44.3 22 0.00075 30.8 4.5 27 233-259 123-149 (164)
214 2kn9_A Rubredoxin; metalloprot 44.0 7.9 0.00027 31.6 1.3 15 19-33 26-40 (81)
215 2kae_A GATA-type transcription 43.9 6.9 0.00024 31.1 0.9 9 21-29 31-39 (71)
216 1p4w_A RCSB; solution structur 43.7 17 0.00058 30.3 3.4 26 234-259 49-74 (99)
217 3kcc_A Catabolite gene activat 43.6 28 0.00097 33.2 5.5 29 233-261 216-244 (260)
218 3df8_A Possible HXLR family tr 43.4 26 0.0009 29.4 4.7 26 235-260 43-69 (111)
219 2zcm_A Biofilm operon icaabcd 43.4 29 0.001 30.7 5.3 43 213-256 6-49 (192)
220 3dkw_A DNR protein; CRP-FNR, H 43.4 24 0.00084 32.3 4.9 29 232-260 176-204 (227)
221 1v4r_A Transcriptional repress 43.3 6.9 0.00024 32.4 0.9 27 233-259 33-60 (102)
222 3tgn_A ADC operon repressor AD 43.2 29 0.00098 29.7 5.0 25 235-259 52-76 (146)
223 3t72_q RNA polymerase sigma fa 43.1 17 0.00059 30.4 3.4 25 233-257 38-62 (99)
224 3tqn_A Transcriptional regulat 42.7 15 0.00053 31.0 3.1 28 232-259 30-58 (113)
225 3frw_A Putative Trp repressor 42.6 22 0.00077 30.4 4.0 30 231-260 55-84 (107)
226 2pmi_B PHO85 cyclin PHO80, ami 42.6 1.6E+02 0.0054 29.5 10.8 99 173-273 75-179 (293)
227 3t8r_A Staphylococcus aureus C 42.6 19 0.00066 31.9 3.8 39 222-260 16-54 (143)
228 4e2x_A TCAB9; kijanose, tetron 42.4 8.3 0.00029 39.9 1.6 22 21-42 54-75 (416)
229 1ylf_A RRF2 family protein; st 42.3 20 0.0007 31.8 4.0 38 222-260 19-56 (149)
230 1u8b_A ADA polyprotein; protei 42.2 28 0.00097 29.9 4.8 39 232-275 91-129 (133)
231 2kko_A Possible transcriptiona 42.2 25 0.00085 29.3 4.3 28 233-260 37-64 (108)
232 4ich_A Transcriptional regulat 41.7 19 0.00066 35.4 4.1 37 219-256 125-162 (311)
233 1s7o_A Hypothetical UPF0122 pr 41.6 21 0.0007 30.5 3.7 27 233-259 37-63 (113)
234 3neu_A LIN1836 protein; struct 41.6 20 0.0007 30.9 3.7 28 232-259 34-62 (125)
235 2fiy_A Protein FDHE homolog; F 41.6 14 0.00049 37.5 3.1 10 21-30 254-263 (309)
236 3by6_A Predicted transcription 41.6 16 0.00055 31.7 3.1 28 232-259 32-60 (126)
237 1xsv_A Hypothetical UPF0122 pr 41.5 27 0.00093 29.6 4.5 27 233-259 40-66 (113)
238 3kkc_A TETR family transcripti 41.3 17 0.00058 31.7 3.3 37 219-256 17-54 (177)
239 1ub9_A Hypothetical protein PH 40.9 15 0.00052 29.4 2.6 28 233-260 29-56 (100)
240 1r1u_A CZRA, repressor protein 40.7 24 0.00082 29.2 3.9 27 233-259 38-64 (106)
241 2ek5_A Predicted transcription 40.6 23 0.00078 30.9 3.9 28 232-259 25-53 (129)
242 2q24_A Putative TETR family tr 40.5 24 0.00082 31.4 4.2 38 218-256 19-56 (194)
243 2lfw_A PHYR sigma-like domain; 40.4 16 0.00056 32.3 3.0 28 232-259 107-134 (157)
244 1u8b_A ADA polyprotein; protei 40.3 21 0.00072 30.8 3.6 38 131-181 91-128 (133)
245 3dfx_A Trans-acting T-cell-spe 40.2 7.4 0.00025 30.2 0.5 29 3-31 9-39 (63)
246 2zjr_Z 50S ribosomal protein L 40.1 9.9 0.00034 29.2 1.2 24 2-31 31-54 (60)
247 2fiy_A Protein FDHE homolog; F 39.8 12 0.00042 37.9 2.3 29 2-30 183-218 (309)
248 3h5t_A Transcriptional regulat 39.8 15 0.00051 36.9 3.0 26 232-257 7-32 (366)
249 3bro_A Transcriptional regulat 39.5 35 0.0012 28.8 4.9 28 233-260 49-76 (141)
250 2zkz_A Transcriptional repress 39.4 18 0.0006 29.7 2.8 28 233-260 40-67 (99)
251 2jsc_A Transcriptional regulat 39.3 28 0.00094 29.5 4.2 27 234-260 34-60 (118)
252 3p2a_A Thioredoxin 2, putative 39.3 9.3 0.00032 33.1 1.1 35 1-35 5-40 (148)
253 3k69_A Putative transcription 39.2 24 0.00082 32.1 4.0 44 116-160 12-55 (162)
254 3iwz_A CAP-like, catabolite ac 39.0 33 0.0011 31.5 5.0 29 233-261 186-214 (230)
255 1on2_A Transcriptional regulat 39.0 33 0.0011 29.5 4.7 27 233-259 21-47 (142)
256 4a0z_A Transcription factor FA 38.9 33 0.0011 32.1 4.9 31 232-262 24-54 (190)
257 2v3b_B Rubredoxin 2, rubredoxi 38.6 12 0.0004 28.2 1.4 12 21-32 4-15 (55)
258 1neq_A DNA-binding protein NER 38.5 26 0.00088 27.5 3.5 24 232-255 20-43 (74)
259 2jpc_A SSRB; DNA binding prote 38.5 32 0.0011 25.0 3.9 32 133-164 13-44 (61)
260 1ovx_A ATP-dependent CLP prote 38.4 12 0.00042 29.3 1.5 28 1-28 18-48 (67)
261 1yk4_A Rubredoxin, RD; electro 38.4 12 0.00042 27.7 1.5 12 21-32 3-14 (52)
262 3nrv_A Putative transcriptiona 38.4 67 0.0023 27.3 6.7 27 234-260 54-80 (148)
263 3dv8_A Transcriptional regulat 38.1 68 0.0023 29.0 7.0 47 114-160 147-196 (220)
264 1dx8_A Rubredoxin; electron tr 37.8 12 0.00041 29.6 1.4 7 22-28 42-48 (70)
265 2fmy_A COOA, carbon monoxide o 37.7 72 0.0025 29.0 7.2 29 132-160 166-194 (220)
266 3b02_A Transcriptional regulat 37.7 55 0.0019 29.3 6.3 32 132-163 138-169 (195)
267 2a6h_F RNA polymerase sigma fa 37.4 3.7E+02 0.013 27.9 15.0 25 233-257 379-403 (423)
268 1l1o_C Replication protein A 7 37.4 15 0.00053 34.0 2.4 27 3-31 45-73 (181)
269 2f2e_A PA1607; transcription f 37.3 35 0.0012 30.1 4.7 28 233-260 36-63 (146)
270 1bl0_A Protein (multiple antib 37.3 38 0.0013 28.9 4.8 101 116-274 11-112 (129)
271 1ft9_A Carbon monoxide oxidati 37.1 26 0.00089 32.3 4.0 30 233-262 162-191 (222)
272 1vzi_A Desulfoferrodoxin; ferr 37.0 12 0.00041 32.9 1.5 27 3-31 9-35 (126)
273 3jsj_A Putative TETR-family tr 36.8 30 0.001 30.5 4.2 38 218-256 13-50 (190)
274 3f6o_A Probable transcriptiona 36.6 25 0.00084 29.8 3.4 28 233-260 30-57 (118)
275 3kor_A Possible Trp repressor; 36.4 25 0.00085 30.7 3.3 28 233-260 74-101 (119)
276 1rzs_A Antirepressor, regulato 36.4 20 0.00069 26.8 2.5 21 235-255 11-31 (61)
277 2hku_A A putative transcriptio 36.4 42 0.0014 30.3 5.3 40 216-256 22-61 (215)
278 1j9i_A GPNU1 DBD;, terminase s 36.3 15 0.00053 28.0 1.8 22 235-256 3-24 (68)
279 2xi8_A Putative transcription 36.3 23 0.00078 25.8 2.8 39 233-276 13-51 (66)
280 3mky_B Protein SOPB; partition 36.1 35 0.0012 32.2 4.5 35 225-259 33-67 (189)
281 1xd7_A YWNA; structural genomi 36.0 32 0.0011 30.3 4.2 45 113-160 6-50 (145)
282 3bpv_A Transcriptional regulat 36.0 35 0.0012 28.7 4.4 28 232-259 41-68 (138)
283 2gau_A Transcriptional regulat 36.0 89 0.0031 28.6 7.6 29 132-160 179-207 (232)
284 2hsg_A Glucose-resistance amyl 35.9 18 0.0006 35.7 2.7 24 234-257 2-25 (332)
285 3bvo_A CO-chaperone protein HS 35.8 16 0.00055 34.8 2.2 28 3-32 12-39 (207)
286 2lkp_A Transcriptional regulat 35.7 37 0.0013 28.3 4.4 28 233-260 44-71 (119)
287 2bgc_A PRFA; bacterial infecti 35.5 50 0.0017 30.7 5.8 31 232-262 166-198 (238)
288 1u2w_A CADC repressor, cadmium 35.4 29 0.00099 29.6 3.7 29 232-260 54-82 (122)
289 1k78_A Paired box protein PAX5 35.4 1.1E+02 0.0037 26.4 7.7 27 134-160 49-75 (149)
290 1u78_A TC3 transposase, transp 35.4 46 0.0016 28.3 5.0 28 234-261 22-49 (141)
291 2a6c_A Helix-turn-helix motif; 34.9 69 0.0024 24.9 5.7 43 230-276 27-69 (83)
292 2fu4_A Ferric uptake regulatio 34.9 40 0.0014 26.3 4.2 28 233-260 32-64 (83)
293 2rek_A Putative TETR-family tr 34.8 25 0.00086 31.4 3.4 37 219-256 21-57 (199)
294 2elh_A CG11849-PA, LD40883P; s 34.7 24 0.00083 28.2 2.9 25 235-259 39-63 (87)
295 4a5n_A Uncharacterized HTH-typ 34.7 46 0.0016 29.2 4.9 29 232-260 37-66 (131)
296 2oqg_A Possible transcriptiona 34.7 28 0.00095 28.7 3.4 27 233-259 33-59 (114)
297 2p7v_B Sigma-70, RNA polymeras 34.4 41 0.0014 25.3 4.0 33 132-164 24-56 (68)
298 1bia_A BIRA bifunctional prote 34.1 35 0.0012 34.4 4.6 30 231-260 16-45 (321)
299 1z4h_A TORI, TOR inhibition pr 34.1 27 0.00092 26.6 2.9 23 235-257 11-33 (66)
300 1r1t_A Transcriptional repress 34.0 49 0.0017 28.3 4.9 28 233-260 58-85 (122)
301 3qkx_A Uncharacterized HTH-typ 34.0 39 0.0013 29.4 4.4 37 219-256 13-50 (188)
302 2jn6_A Protein CGL2762, transp 33.9 50 0.0017 26.6 4.8 28 234-261 23-50 (97)
303 3omt_A Uncharacterized protein 33.9 25 0.00085 26.6 2.7 39 233-276 20-58 (73)
304 3lfp_A CSP231I C protein; tran 33.8 73 0.0025 25.5 5.8 43 233-276 13-55 (98)
305 3bqz_B HTH-type transcriptiona 33.8 45 0.0015 29.2 4.9 37 219-256 7-44 (194)
306 3ulq_B Transcriptional regulat 33.7 44 0.0015 27.1 4.4 31 134-164 45-75 (90)
307 2kdx_A HYPA, hydrogenase/ureas 33.7 16 0.00055 31.5 1.7 8 22-29 92-99 (119)
308 3g3z_A NMB1585, transcriptiona 33.7 1.5E+02 0.0051 25.0 8.2 26 234-259 45-70 (145)
309 3kz3_A Repressor protein CI; f 33.7 25 0.00084 27.2 2.7 39 233-276 24-62 (80)
310 1l3l_A Transcriptional activat 33.6 33 0.0011 32.5 4.2 27 233-259 187-213 (234)
311 2ds5_A CLPX, ATP-dependent CLP 33.5 12 0.00041 27.8 0.7 27 1-27 11-40 (51)
312 1ntc_A Protein (nitrogen regul 33.5 33 0.0011 27.8 3.6 29 229-259 61-89 (91)
313 1r69_A Repressor protein CI; g 33.5 27 0.00092 25.7 2.8 24 233-256 13-36 (69)
314 1d0q_A DNA primase; zinc-bindi 33.5 18 0.00063 30.3 2.0 26 3-28 39-66 (103)
315 2r1j_L Repressor protein C2; p 33.3 26 0.0009 25.6 2.7 38 233-275 17-54 (68)
316 3knw_A Putative transcriptiona 33.2 41 0.0014 29.9 4.6 39 217-256 17-56 (212)
317 1ku9_A Hypothetical protein MJ 33.1 85 0.0029 26.4 6.5 28 232-259 39-66 (152)
318 3bro_A Transcriptional regulat 33.0 1.4E+02 0.0046 24.9 7.7 39 122-160 39-77 (141)
319 1pdn_C Protein (PRD paired); p 32.9 36 0.0012 28.2 3.8 28 234-261 33-60 (128)
320 1qpz_A PURA, protein (purine n 32.9 24 0.00082 34.9 3.1 22 235-256 1-22 (340)
321 1fse_A GERE; helix-turn-helix 32.7 69 0.0024 23.9 5.2 32 133-164 26-57 (74)
322 2nnn_A Probable transcriptiona 32.6 1.7E+02 0.0059 24.2 8.3 31 133-163 52-82 (140)
323 4ev0_A Transcription regulator 32.5 39 0.0013 30.6 4.3 30 233-262 162-191 (216)
324 1zug_A Phage 434 CRO protein; 32.3 29 0.00098 25.7 2.8 24 233-256 15-38 (71)
325 3q87_A Putative uncharacterize 32.1 10 0.00036 33.4 0.2 17 14-30 93-109 (125)
326 2kao_A Methionine-R-sulfoxide 31.9 31 0.0011 30.3 3.2 32 1-32 1-32 (124)
327 3e7l_A Transcriptional regulat 31.9 51 0.0017 24.7 4.2 24 236-259 34-57 (63)
328 3fm5_A Transcriptional regulat 31.8 1.1E+02 0.0038 26.0 7.1 30 231-260 51-80 (150)
329 3ppb_A Putative TETR family tr 31.8 45 0.0015 29.1 4.5 38 218-256 13-51 (195)
330 2b5a_A C.BCLI; helix-turn-heli 31.7 29 0.001 26.2 2.8 39 233-276 22-60 (77)
331 1or7_A Sigma-24, RNA polymeras 31.7 38 0.0013 30.4 4.0 27 233-259 155-181 (194)
332 3h0g_L DNA-directed RNA polyme 31.6 21 0.00071 27.7 1.8 24 3-28 23-46 (63)
333 3b7h_A Prophage LP1 protein 11 31.5 29 0.001 26.2 2.8 41 232-276 18-58 (78)
334 2kpj_A SOS-response transcript 31.4 42 0.0014 26.8 3.8 42 230-276 18-59 (94)
335 2qtq_A Transcriptional regulat 31.2 60 0.002 28.8 5.3 38 218-256 20-58 (213)
336 3f1b_A TETR-like transcription 31.2 48 0.0016 29.2 4.6 37 219-256 19-56 (203)
337 3lwj_A Putative TETR-family tr 31.1 48 0.0016 29.3 4.6 37 219-256 17-54 (202)
338 2fbh_A Transcriptional regulat 31.1 52 0.0018 27.8 4.7 29 231-259 49-77 (146)
339 2gxg_A 146AA long hypothetical 31.1 49 0.0017 28.0 4.5 29 232-260 48-76 (146)
340 2k9q_A Uncharacterized protein 31.0 29 0.001 26.5 2.7 38 233-275 14-51 (77)
341 3fmy_A HTH-type transcriptiona 31.0 21 0.00073 27.4 1.9 23 233-255 23-45 (73)
342 3kjx_A Transcriptional regulat 31.0 21 0.0007 35.5 2.3 24 234-257 10-33 (344)
343 2qvo_A Uncharacterized protein 30.8 51 0.0017 26.5 4.3 27 233-259 29-55 (95)
344 3deu_A Transcriptional regulat 30.7 1.1E+02 0.0039 26.9 7.1 30 231-260 65-94 (166)
345 1z7u_A Hypothetical protein EF 30.5 41 0.0014 28.1 3.8 27 233-259 34-61 (112)
346 4ffb_C Protein STU2; tubulin f 30.5 3.5E+02 0.012 25.6 11.7 139 64-206 65-211 (278)
347 2oz6_A Virulence factor regula 30.1 61 0.0021 29.1 5.2 29 132-160 163-191 (207)
348 1y7y_A C.AHDI; helix-turn-heli 29.9 33 0.0011 25.6 2.8 39 233-276 25-63 (74)
349 2rdp_A Putative transcriptiona 29.9 1.3E+02 0.0046 25.3 7.2 27 233-259 55-81 (150)
350 3vp5_A Transcriptional regulat 29.9 48 0.0016 29.5 4.4 38 218-256 16-54 (189)
351 3col_A Putative transcription 29.9 41 0.0014 29.4 3.9 39 217-256 13-52 (196)
352 1tbx_A ORF F-93, hypothetical 29.7 51 0.0017 26.4 4.1 29 232-260 20-52 (99)
353 1x3u_A Transcriptional regulat 29.7 78 0.0027 24.1 5.1 32 133-164 31-62 (79)
354 2q0o_A Probable transcriptiona 29.7 34 0.0012 32.5 3.5 27 233-259 189-215 (236)
355 3t76_A VANU, transcriptional r 29.7 31 0.0011 28.0 2.7 39 233-277 36-74 (88)
356 1adr_A P22 C2 repressor; trans 29.7 32 0.0011 25.8 2.7 38 233-275 17-54 (76)
357 3bdd_A Regulatory protein MARR 29.6 42 0.0014 28.3 3.8 28 233-260 44-71 (142)
358 2fa5_A Transcriptional regulat 29.5 55 0.0019 28.4 4.6 29 232-260 61-89 (162)
359 1ku3_A Sigma factor SIGA; heli 29.4 60 0.002 24.7 4.3 31 132-162 29-59 (73)
360 1pb6_A Hypothetical transcript 29.3 55 0.0019 29.1 4.7 38 218-256 22-60 (212)
361 3eco_A MEPR; mutlidrug efflux 29.2 50 0.0017 27.9 4.2 27 233-259 46-72 (139)
362 3qq6_A HTH-type transcriptiona 29.1 33 0.0011 26.6 2.7 40 233-276 22-61 (78)
363 2r0q_C Putative transposon TN5 29.1 1E+02 0.0036 28.5 6.8 30 229-258 170-199 (209)
364 3nxc_A HTH-type protein SLMA; 29.1 49 0.0017 29.4 4.3 41 216-256 26-67 (212)
365 2rae_A Transcriptional regulat 29.0 62 0.0021 28.7 5.0 39 217-256 20-59 (207)
366 2nyx_A Probable transcriptiona 29.0 68 0.0023 28.3 5.2 26 234-259 59-84 (168)
367 3fx3_A Cyclic nucleotide-bindi 29.0 73 0.0025 29.3 5.7 32 131-163 176-207 (237)
368 2zkr_2 60S ribosomal protein L 28.9 21 0.00072 29.9 1.5 22 3-28 18-39 (97)
369 1yyv_A Putative transcriptiona 28.8 45 0.0015 28.9 3.8 28 232-259 46-74 (131)
370 3rd3_A Probable transcriptiona 28.8 57 0.0019 28.5 4.7 39 217-256 13-52 (197)
371 3lhq_A Acrab operon repressor 28.8 54 0.0019 29.1 4.6 37 219-256 19-56 (220)
372 2v57_A TETR family transcripti 28.7 36 0.0012 29.9 3.3 36 219-256 19-54 (190)
373 1tty_A Sigma-A, RNA polymerase 28.6 59 0.002 25.8 4.3 32 132-163 37-68 (87)
374 4ell_A Retinoblastoma-associat 28.6 1.2E+02 0.0042 31.8 7.7 62 180-242 287-350 (411)
375 2g7s_A Transcriptional regulat 28.6 44 0.0015 29.1 3.8 37 219-256 13-50 (194)
376 1u78_A TC3 transposase, transp 28.5 77 0.0026 26.7 5.3 71 77-155 24-101 (141)
377 1qgp_A Protein (double strande 28.5 86 0.0029 24.6 5.1 31 131-161 29-59 (77)
378 2jrp_A Putative cytoplasmic pr 28.4 35 0.0012 27.7 2.7 26 3-31 4-29 (81)
379 3b81_A Transcriptional regulat 28.4 58 0.002 28.7 4.7 38 218-256 15-53 (203)
380 4fe7_A Xylose operon regulator 28.4 67 0.0023 32.8 5.7 87 78-186 324-411 (412)
381 3ryp_A Catabolite gene activat 28.3 68 0.0023 28.8 5.2 29 132-160 166-194 (210)
382 1je8_A Nitrate/nitrite respons 28.3 83 0.0028 24.7 5.1 32 133-164 36-67 (82)
383 2a61_A Transcriptional regulat 28.2 45 0.0015 28.3 3.7 28 233-260 46-73 (145)
384 2eth_A Transcriptional regulat 28.2 57 0.002 28.2 4.5 27 234-260 58-84 (154)
385 3ech_A MEXR, multidrug resista 28.2 89 0.0031 26.4 5.7 28 233-260 50-77 (142)
386 3bs3_A Putative DNA-binding pr 28.2 36 0.0012 25.5 2.8 39 233-276 22-60 (76)
387 3cjn_A Transcriptional regulat 28.1 45 0.0015 29.1 3.8 28 232-259 64-91 (162)
388 2zcw_A TTHA1359, transcription 28.1 69 0.0023 28.8 5.2 29 132-160 145-173 (202)
389 3kz9_A SMCR; transcriptional r 28.1 54 0.0019 28.8 4.4 37 219-256 22-59 (206)
390 3dcf_A Transcriptional regulat 28.0 56 0.0019 29.1 4.5 38 218-256 35-73 (218)
391 1jgs_A Multiple antibiotic res 27.9 1.5E+02 0.0052 24.6 7.1 27 233-259 47-73 (138)
392 3r0a_A Putative transcriptiona 27.9 71 0.0024 27.1 4.9 38 123-160 31-69 (123)
393 3dkw_A DNR protein; CRP-FNR, H 27.5 72 0.0025 29.0 5.3 33 131-163 176-208 (227)
394 2fsw_A PG_0823 protein; alpha- 27.5 57 0.002 26.9 4.1 29 232-260 36-65 (107)
395 2dk5_A DNA-directed RNA polyme 27.3 56 0.0019 26.8 3.9 28 232-259 34-61 (91)
396 3d0s_A Transcriptional regulat 27.2 1.3E+02 0.0045 27.3 7.1 29 132-160 176-204 (227)
397 2pij_A Prophage PFL 6 CRO; tra 27.1 74 0.0025 23.4 4.4 21 236-256 15-35 (67)
398 3s8q_A R-M controller protein; 27.0 37 0.0013 26.1 2.7 39 233-276 23-61 (82)
399 3cdh_A Transcriptional regulat 27.0 63 0.0021 27.8 4.5 29 232-260 55-83 (155)
400 1umq_A Photosynthetic apparatu 27.0 40 0.0014 27.2 2.9 23 236-258 56-78 (81)
401 2riq_A Poly [ADP-ribose] polym 27.0 28 0.00096 31.9 2.2 22 3-29 80-101 (160)
402 2pex_A Transcriptional regulat 26.9 1.5E+02 0.0051 25.2 7.0 29 232-260 59-87 (153)
403 3f6w_A XRE-family like protein 26.9 38 0.0013 26.1 2.7 39 233-276 26-64 (83)
404 1qbj_A Protein (double-strande 26.9 1E+02 0.0035 24.6 5.3 30 132-161 26-55 (81)
405 2fq4_A Transcriptional regulat 26.8 63 0.0021 28.6 4.6 37 219-256 17-54 (192)
406 3qbm_A TETR transcriptional re 26.8 65 0.0022 28.2 4.7 37 219-256 12-49 (199)
407 4fx0_A Probable transcriptiona 26.8 85 0.0029 27.3 5.4 27 233-259 51-77 (148)
408 3bj6_A Transcriptional regulat 26.7 1.2E+02 0.0042 25.6 6.4 27 233-259 53-79 (152)
409 2ef8_A C.ECOT38IS, putative tr 26.6 38 0.0013 26.0 2.7 24 233-256 22-45 (84)
410 3szt_A QCSR, quorum-sensing co 26.6 41 0.0014 32.0 3.5 27 233-259 189-215 (237)
411 4hc9_A Trans-acting T-cell-spe 26.5 19 0.00066 31.1 0.9 29 3-31 7-37 (115)
412 3gzi_A Transcriptional regulat 26.5 61 0.0021 29.0 4.5 37 219-256 22-59 (218)
413 3on4_A Transcriptional regulat 26.5 50 0.0017 28.7 3.8 38 218-256 14-52 (191)
414 2l1p_A DNA-binding protein SAT 26.5 37 0.0013 27.7 2.5 23 234-256 32-54 (83)
415 2yve_A Transcriptional regulat 26.5 59 0.002 28.7 4.4 38 218-256 8-46 (185)
416 2ras_A Transcriptional regulat 26.5 64 0.0022 28.8 4.6 36 219-255 16-52 (212)
417 3dpj_A Transcription regulator 26.5 65 0.0022 28.2 4.6 37 219-256 13-50 (194)
418 2h09_A Transcriptional regulat 26.5 53 0.0018 28.7 3.9 29 233-261 53-81 (155)
419 1t33_A Putative transcriptiona 26.4 68 0.0023 28.9 4.8 37 219-256 17-53 (224)
420 3dew_A Transcriptional regulat 26.3 51 0.0017 28.9 3.9 39 218-257 12-51 (206)
421 2wiu_B HTH-type transcriptiona 26.3 40 0.0014 26.2 2.8 40 232-276 23-62 (88)
422 2jne_A Hypothetical protein YF 26.3 28 0.00094 29.3 1.8 25 3-30 34-58 (101)
423 1o5l_A Transcriptional regulat 26.3 22 0.00076 32.7 1.4 31 232-262 162-192 (213)
424 3c2b_A Transcriptional regulat 26.2 63 0.0022 29.0 4.6 38 218-256 19-57 (221)
425 2o20_A Catabolite control prot 26.2 14 0.00048 36.5 0.0 26 233-258 4-29 (332)
426 3cwr_A Transcriptional regulat 26.1 51 0.0017 29.1 3.8 37 219-256 22-59 (208)
427 1zyb_A Transcription regulator 26.1 86 0.0029 28.9 5.6 29 132-160 185-213 (232)
428 2lr8_A CAsp8-associated protei 32.0 14 0.00049 29.1 0.0 41 122-162 24-65 (70)
429 2fbi_A Probable transcriptiona 26.0 42 0.0014 28.3 3.1 27 233-259 49-75 (142)
430 2d6y_A Putative TETR family re 26.0 85 0.0029 28.1 5.4 38 218-256 12-50 (202)
431 1x57_A Endothelial differentia 25.9 53 0.0018 25.9 3.5 41 231-276 23-63 (91)
432 2fnf_X Putative RAS effector N 25.9 40 0.0014 26.4 2.6 27 2-33 36-62 (72)
433 1lj9_A Transcriptional regulat 25.8 59 0.002 27.5 4.1 27 233-259 42-68 (144)
434 3s5r_A Transcriptional regulat 25.8 62 0.0021 28.8 4.4 39 217-256 13-52 (216)
435 1zk8_A Transcriptional regulat 25.7 54 0.0019 28.5 3.9 40 216-256 10-50 (183)
436 3vpr_A Transcriptional regulat 25.7 88 0.003 27.4 5.4 37 219-256 8-45 (190)
437 1s3j_A YUSO protein; structura 25.7 67 0.0023 27.5 4.4 28 233-260 50-77 (155)
438 3c57_A Two component transcrip 25.6 66 0.0023 26.0 4.1 31 134-164 43-73 (95)
439 3eus_A DNA-binding protein; st 25.6 41 0.0014 26.5 2.7 39 233-276 26-64 (86)
440 2bgc_A PRFA; bacterial infecti 25.5 1.4E+02 0.0047 27.6 6.9 28 133-160 169-197 (238)
441 2jmo_A Parkin; IBR, E3 ligase, 25.5 37 0.0013 27.1 2.4 29 1-30 25-60 (80)
442 2zb9_A Putative transcriptiona 25.5 52 0.0018 29.6 3.8 37 219-256 28-65 (214)
443 3he0_A Transcriptional regulat 25.4 87 0.003 27.3 5.3 41 215-256 12-53 (196)
444 3f0c_A TETR-molecule A, transc 25.3 68 0.0023 28.6 4.6 39 217-256 14-53 (216)
445 1k78_A Paired box protein PAX5 25.3 56 0.0019 28.3 3.9 27 234-260 48-74 (149)
446 3mvp_A TETR/ACRR transcription 25.3 53 0.0018 29.2 3.8 37 219-256 31-68 (217)
447 3bru_A Regulatory protein, TET 25.3 63 0.0022 29.0 4.4 39 217-256 33-72 (222)
448 1z6r_A MLC protein; transcript 25.3 67 0.0023 33.0 5.0 31 230-260 26-56 (406)
449 3anp_C Transcriptional repress 25.3 71 0.0024 28.4 4.7 36 219-255 14-50 (204)
450 3o60_A LIN0861 protein; PSI, M 25.2 49 0.0017 29.8 3.6 37 219-256 24-62 (185)
451 3kz3_A Repressor protein CI; f 25.2 1.1E+02 0.0037 23.4 5.2 43 132-188 24-66 (80)
452 3eco_A MEPR; mutlidrug efflux 25.2 1.9E+02 0.0065 24.0 7.3 39 122-160 36-74 (139)
453 3hsr_A HTH-type transcriptiona 25.1 1.2E+02 0.0042 25.5 6.0 28 232-259 48-75 (140)
454 2qww_A Transcriptional regulat 25.1 54 0.0019 28.2 3.7 28 233-260 54-81 (154)
455 3bni_A Putative TETR-family tr 25.1 68 0.0023 29.4 4.6 38 218-256 47-85 (229)
456 3c7j_A Transcriptional regulat 24.9 53 0.0018 31.4 3.9 28 232-259 47-74 (237)
457 3a43_A HYPD, hydrogenase nicke 24.9 18 0.00062 32.2 0.5 19 13-31 63-81 (139)
458 3vib_A MTRR; helix-turn-helix 24.8 73 0.0025 28.5 4.7 37 219-256 15-52 (210)
459 2iai_A Putative transcriptiona 24.8 71 0.0024 29.2 4.7 36 219-255 35-71 (230)
460 3hug_A RNA polymerase sigma fa 24.8 68 0.0023 25.6 4.0 29 134-162 54-82 (92)
461 3crj_A Transcription regulator 24.7 73 0.0025 28.5 4.7 36 219-255 19-55 (199)
462 2f07_A YVDT; helix-turn-helix, 24.7 74 0.0025 28.3 4.7 38 217-255 13-51 (197)
463 3nqo_A MARR-family transcripti 24.7 1.1E+02 0.0037 27.7 5.9 28 232-259 55-82 (189)
464 2ewt_A BLDD, putative DNA-bind 24.6 47 0.0016 24.5 2.8 39 233-276 20-60 (71)
465 2xzm_9 RPS31E; ribosome, trans 24.6 36 0.0012 32.0 2.5 27 3-30 115-141 (189)
466 2o8x_A Probable RNA polymerase 24.6 75 0.0026 23.4 4.0 31 133-163 31-61 (70)
467 3bd1_A CRO protein; transcript 24.5 41 0.0014 25.9 2.5 22 236-257 13-34 (79)
468 4gop_C Putative uncharacterize 24.4 37 0.0012 35.8 2.8 28 3-32 310-339 (444)
469 3e97_A Transcriptional regulat 24.4 1.2E+02 0.0041 27.6 6.2 45 116-160 150-202 (231)
470 1sgm_A Putative HTH-type trans 24.4 38 0.0013 29.5 2.6 39 218-257 10-49 (191)
471 1p4w_A RCSB; solution structur 24.3 72 0.0025 26.4 4.1 31 134-164 50-80 (99)
472 2guh_A Putative TETR-family tr 24.2 67 0.0023 29.4 4.4 38 218-256 43-81 (214)
473 1z91_A Organic hydroperoxide r 24.2 91 0.0031 26.4 5.0 26 234-259 54-79 (147)
474 3edp_A LIN2111 protein; APC883 24.2 51 0.0017 31.6 3.6 28 232-259 30-58 (236)
475 3clo_A Transcriptional regulat 24.1 49 0.0017 31.8 3.5 27 233-259 211-237 (258)
476 3bhq_A Transcriptional regulat 24.1 95 0.0033 27.8 5.4 37 219-256 17-54 (211)
477 2lk0_A RNA-binding protein 5; 24.1 30 0.001 22.9 1.3 12 18-29 3-14 (32)
478 1d5y_A ROB transcription facto 24.0 88 0.003 30.1 5.4 48 222-275 8-55 (292)
479 4ghj_A Probable transcriptiona 23.9 44 0.0015 27.8 2.7 37 233-276 48-84 (101)
480 1g2h_A Transcriptional regulat 23.9 45 0.0016 24.9 2.5 23 236-258 35-57 (61)
481 3nrg_A TETR family transcripti 23.9 37 0.0013 30.4 2.5 38 218-256 17-55 (217)
482 1lmb_3 Protein (lambda repress 23.9 46 0.0016 26.2 2.7 39 233-276 29-67 (92)
483 2ppx_A AGR_C_3184P, uncharacte 23.7 45 0.0015 27.0 2.7 23 233-255 42-64 (99)
484 4hbl_A Transcriptional regulat 23.6 60 0.0021 27.9 3.7 28 232-259 53-80 (149)
485 3kcc_A Catabolite gene activat 23.6 1.2E+02 0.0041 28.6 6.2 29 132-160 216-244 (260)
486 3uj3_X DNA-invertase; helix-tu 23.6 17 0.00058 33.6 0.0 51 209-260 134-184 (193)
487 2eh3_A Transcriptional regulat 23.4 83 0.0028 27.4 4.7 26 231-256 18-44 (179)
488 2rnj_A Response regulator prot 23.4 62 0.0021 25.8 3.5 32 133-164 44-75 (91)
489 3f6v_A Possible transcriptiona 23.3 55 0.0019 29.2 3.4 30 232-261 69-98 (151)
490 3qp6_A CVIR transcriptional re 23.3 51 0.0017 32.1 3.5 27 233-259 211-237 (265)
491 3bja_A Transcriptional regulat 23.3 1.1E+02 0.0037 25.5 5.2 29 232-260 45-73 (139)
492 3bwg_A Uncharacterized HTH-typ 23.3 56 0.0019 31.2 3.7 29 232-260 26-55 (239)
493 2dg7_A Putative transcriptiona 23.2 57 0.002 28.8 3.6 38 218-256 11-49 (195)
494 1b4a_A Arginine repressor; hel 23.1 50 0.0017 29.8 3.0 30 232-261 17-51 (149)
495 3u2r_A Regulatory protein MARR 23.1 1.4E+02 0.0047 26.1 6.1 66 193-260 23-88 (168)
496 3s2w_A Transcriptional regulat 23.1 63 0.0022 28.1 3.8 28 232-259 62-89 (159)
497 2ibd_A Possible transcriptiona 23.0 80 0.0027 28.1 4.6 37 219-256 19-56 (204)
498 1d5y_A ROB transcription facto 23.0 67 0.0023 30.9 4.3 99 118-274 5-104 (292)
499 2dg8_A Putative TETR-family tr 22.9 57 0.0019 28.9 3.5 40 216-256 11-51 (193)
500 3h5o_A Transcriptional regulat 22.9 18 0.00061 35.9 0.0 41 234-276 4-44 (339)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=9e-57 Score=471.71 Aligned_cols=264 Identities=16% Similarity=0.266 Sum_probs=139.4
Q ss_pred CCCCCCC--CCceeecCCCceecCcccceecccccccccccccccC----C--CccccCc------------cce-----
Q 008401 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA----G--QSQLSGN------------FVR----- 57 (567)
Q Consensus 3 ~Cp~Cgs--~~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s~----G--~s~v~G~------------~v~----- 57 (567)
.||+||+ +.+++|+.+|++||++||+||+|++||.++||+.+++ | ++++++. .++
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~~ 102 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETT 102 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSSC
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCCc
Confidence 7999997 5889999999999999999999999999999997642 2 3554321 111
Q ss_pred ---------eeccc-ccchHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHH
Q 008401 58 ---------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127 (567)
Q Consensus 58 ---------~~~~~-~~~srer~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiAC 127 (567)
.||.+ ..+++|++|.+|+..|.+||++|+|| ++|+++|..||++++++++++||+.+.++|||||+||
T Consensus 103 ~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiAC 180 (345)
T 4bbr_M 103 DMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180 (345)
T ss_dssp CHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 12222 24778999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhcccccc-------ccccCCchhhHHHHHhhhCCCCCHHHHHHHHH
Q 008401 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200 (567)
Q Consensus 128 R~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~-------~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~ 200 (567)
|++++|+||+||+++++|++++|+++|+.|.+.|++....+ ..+.++|++||+|||+.|++ +++|.+.|++
T Consensus 181 R~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l--~~~v~~~A~~ 258 (345)
T 4bbr_M 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL--PMQVTTSAEY 258 (345)
T ss_dssp HHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC----------------------------------------------
T ss_pred HhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 99999999999999999999999999999999999852110 02348999999999999986 7899999999
Q ss_pred HHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHH
Q 008401 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271 (567)
Q Consensus 201 iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef 271 (567)
|+++|.++||++||+|.|||||||||||+++|+++|+++|++++|||++|||+||+||.+.-. .|.+.+|
T Consensus 259 i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~-~l~~~~~ 328 (345)
T 4bbr_M 259 TAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD-KLVDPQL 328 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-hhcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999975544 5555555
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-55 Score=457.50 Aligned_cols=262 Identities=15% Similarity=0.260 Sum_probs=136.8
Q ss_pred CCCCCCCCC--CceeecCCCceecCcccceecccccccccccccccC------CCccccC------------ccce----
Q 008401 2 VWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA------GQSQLSG------------NFVR---- 57 (567)
Q Consensus 2 ~~Cp~Cgs~--~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s~------G~s~v~G------------~~v~---- 57 (567)
+.||+||+. .+++|+.+|++||++||+||+|++||.+++|+.+++ +++++++ +.++
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~~ 101 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTTS
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCCC
Confidence 479999997 689999999999999999999999999999876542 2334322 1111
Q ss_pred ----------eeccc-ccchHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHH
Q 008401 58 ----------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126 (567)
Q Consensus 58 ----------~~~~~-~~~srer~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiA 126 (567)
.||++ ..+++|++|.+|+..|+.+|.+|+|| +.++++|..||++++++++++||+...|+|||||+|
T Consensus 102 ~~~~~~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiA 179 (345)
T 3k7a_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCC--HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTT
T ss_pred CCchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 12221 24788999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhh------------ccccccccccCCchhhHHHHHhhhCCCCCHHH
Q 008401 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY------------IADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 194 (567)
Q Consensus 127 CR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~------------i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V 194 (567)
||++++|++|+||++++++++++|+++|+.|.+.|+ +..++ ++|+.||+|||+.|++ +++|
T Consensus 180 cR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~-----~~p~~~i~Rf~~~L~l--~~~v 252 (345)
T 3k7a_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSG-----AQNLTYIPRFCSHLGL--PMQV 252 (345)
T ss_dssp SBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------
T ss_pred HHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCC-----CCHHHHHHHHHHHcCC--CHHH
Confidence 999999999999999999999999999999999998 54443 8999999999999986 6889
Q ss_pred HHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHH
Q 008401 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273 (567)
Q Consensus 195 ~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~ 273 (567)
.+.|++|++.|.++|++.||+|.+|||||||||++++|+++|+++|+.++||+++||++||+||.+.. ..|+++||..
T Consensus 253 ~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~-~~l~~~~~~~ 330 (345)
T 3k7a_M 253 TTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHR-DKLVDPQLIA 330 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCCHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998766 6888888873
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=5.6e-40 Score=318.86 Aligned_cols=190 Identities=27% Similarity=0.474 Sum_probs=177.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhh
Q 008401 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143 (567)
Q Consensus 64 ~~srer~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~ 143 (567)
++++|++|.+|++.|.++|.+|+|| +.++++|..||++++++++++||++..++|||||+|||++++|++++||++++
T Consensus 2 ~~~~er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~ 79 (200)
T 1ais_B 2 SDAAERNLAFALSELDRITAQLKLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA 79 (200)
T ss_dssp ------CHHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4688999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHH
Q 008401 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223 (567)
Q Consensus 144 ~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAa 223 (567)
++++++|+++|+.|.+.|++..+++ .++|..||.||++.|++ +.++.+.|++|++.+.++|++.||+|.+|||||
T Consensus 80 ~v~~~~i~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~l--~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 80 RVDKKEIGRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELGL--SEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHTC--CHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 9999999999999999999876531 27999999999999986 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 224 lylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
||+||+++|.++|+++|+.++||++.||++||++|.+
T Consensus 155 ly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 155 LYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999963
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=4.7e-37 Score=299.97 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccCh
Q 008401 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 147 (567)
Q Consensus 68 er~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v 147 (567)
||++.+|++.|+++|.+|+|| +.++++|..||++++.+++++|+++..|+|||||+|||.+++|++++||+.+++++.
T Consensus 2 er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~ 79 (207)
T 1c9b_A 2 DRAMMNAFKEITTMADRINLP--RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISK 79 (207)
T ss_dssp GGGHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCH
T ss_pred chHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCH
Confidence 789999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 008401 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (567)
Q Consensus 148 ~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylA 227 (567)
++|+++|+.|++.|+++.++ .+|..||.||++.|++ +.++.+.|..|++.+.++|+..||+|.+|||||||+|
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~-----~~p~~~l~r~~~~l~l--~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDL-----ITTGDFMSRFCSNLCL--PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-----CCTHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCc-----CCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 99999999999999998765 8999999999999986 7889999999999999999999999999999999999
Q ss_pred HHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHH
Q 008401 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272 (567)
Q Consensus 228 a~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~ 272 (567)
++++|.++|+++|+.++||++.||+++|++|.+. .+.+.++||.
T Consensus 153 ~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~-l~~~~p~~~~ 196 (207)
T 1c9b_A 153 SQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPR-APDLFPTDFK 196 (207)
T ss_dssp HHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGG-HHHHSCSSCC
T ss_pred HHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH-HHHhChHHHc
Confidence 9999999999999999999999999999999753 2233455553
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1e-22 Score=202.42 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCC-CchhHHHHHHHHHHHHHhCCCccHHHHHhhh------
Q 008401 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG-RRTEQVQASCLYLACRQKSKPFLLIDFSNYL------ 143 (567)
Q Consensus 71 l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG-R~~~~vaAACLYiACR~e~~p~tL~Diad~~------ 143 (567)
...+.+.|.+++..|+|| +.++.+|..||++++..+.+++ ++...|++||||+|||.++.|+++.||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~--~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLR--QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 456889999999999999 9999999999999999998888 9999999999999999999999999999876
Q ss_pred --ccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHH
Q 008401 144 --NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCG 221 (567)
Q Consensus 144 --~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~Iaa 221 (567)
..+..+|.+.++.|++.|+++..+ .+|..||.||+..++. +.++.+.|..+++.+..+++..|++|++||+
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~~l~~~~~~~~~--~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLDAFLIV-----HHPYTSLEQAFHDGII--NQKQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCCCC-----CCTHHHHHHHHHTTSS--CHHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHCCCcEEe-----cChHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 578999999999999999998765 8999999999999875 7889999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 222 AalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
||||+|++++|...+ .+.....+|++.+|+.+++++.+
T Consensus 179 Aai~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~ 216 (235)
T 1zp2_A 179 AALLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIIS 216 (235)
T ss_dssp HHHHHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHH
Confidence 999999999987643 24444459999999999999964
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.83 E-value=1.6e-19 Score=181.31 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhcc------
Q 008401 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------ 145 (567)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v------ 145 (567)
..+.+.|.+++..|+|| ..++.+|..||++++..+.+++++...+++||||+|||.++.|+++.||..+.+.
T Consensus 42 ~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 42 REGARFIFDVGTRLGLH--YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhh
Confidence 35789999999999999 9999999999999999999999999999999999999999999999999976431
Q ss_pred -------ChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCC--HHHHHHHHHHHHHhhhccccCCCCh
Q 008401 146 -------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKP 216 (567)
Q Consensus 146 -------~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~--~~V~~~A~~iv~~~~~~~i~~GR~P 216 (567)
+..+|.+..+.|++.|+.+..+ .+|..||.+|+..|+++.. .++...|..+++.+..+++..+.+|
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~P 194 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQV-----EHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEP 194 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceec-----cChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccCh
Confidence 2568999999999999998775 8999999999999975211 2689999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHH-------HH--hccCHHHHHHHHHHHHc
Q 008401 217 SGLCGAALYVSALTHGLKFSKSDIV-------KI--VHICEATLMKRLIEFEN 260 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~~t~~eIa-------~v--v~Vse~TIrkR~kE~~~ 260 (567)
+.||+||||+|++++|.++++.+.. .. .+|++.+|+.++++|.+
T Consensus 195 s~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ 247 (258)
T 2i53_A 195 EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILD 247 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHH
Confidence 9999999999999999987654432 33 49999999999999964
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.82 E-value=8.3e-19 Score=176.28 Aligned_cols=187 Identities=14% Similarity=0.081 Sum_probs=161.9
Q ss_pred hHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhc
Q 008401 66 SRERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (567)
Q Consensus 66 srer~l-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~ 144 (567)
..|..+ ..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+++|+++.||..+..
T Consensus 25 ~~e~~~R~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 25 DKELSCRQQAANLIQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 344444 35789999999999999 999999999999999999999999999999999999999999999999987653
Q ss_pred c-----------C-------hHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 008401 145 I-----------N-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206 (567)
Q Consensus 145 v-----------~-------v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~ 206 (567)
. . ..+|.+..+.|++.|+++..+ .+|..|+.+|+..++. +.++...|..++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~~--~~~~~~~A~~~~~~sl 175 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI-----EHPHTDVVKCTQLVRA--SKDLAQTSYFMATNSL 175 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEe-----eCcHHHHHHHHHHhCC--CcHHHHHHHHHHHhhh
Confidence 1 1 678999999999999998776 8999999999999985 6889999999997765
Q ss_pred -hccccCCCChhHHHHHHHHHHHHhcCCCCCHh----hHHHHh--ccCHHHHHHHHHHHHcc
Q 008401 207 -RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIVKIV--HICEATLMKRLIEFENT 261 (567)
Q Consensus 207 -~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~----eIa~vv--~Vse~TIrkR~kE~~~t 261 (567)
...+..+..|+.||+||||+|++++|.++++. .+...+ +|++.+|+.++++|.+.
T Consensus 176 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 176 HLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp HHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred hcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45667899999999999999999999887653 355543 79999999999999643
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.79 E-value=5.3e-18 Score=173.29 Aligned_cols=184 Identities=10% Similarity=0.050 Sum_probs=163.9
Q ss_pred chHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCc-cHHHHHhh
Q 008401 65 ASRERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-LLIDFSNY 142 (567)
Q Consensus 65 ~srer~l-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~-tL~Diad~ 142 (567)
...++.+ ..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+++|+ ++.||..+
T Consensus 36 ~~~e~~~R~~~~~~I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~ 113 (285)
T 3rgf_B 36 EEEYWKLQIFFTNVIQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAA 113 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 3345555 35679999999999999 99999999999999999999999999999999999999999988 68888765
Q ss_pred hc----------------cChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 008401 143 LN----------------INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206 (567)
Q Consensus 143 ~~----------------v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~ 206 (567)
+. ....+|.+..+.|++.|+++..+ .+|..||.+|+..|+. +.++.+.|..+++.+.
T Consensus 114 ~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~fL~~~~~~l~~--~~~~~~~A~~~l~~sl 186 (285)
T 3rgf_B 114 ATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIV-----YHPYRPLLQYVQDMGQ--EDMLLPLAWRIVNDTY 186 (285)
T ss_dssp HHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHTC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEe-----CChHHHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 42 36689999999999999998765 8899999999999985 6789999999999998
Q ss_pred hccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 207 ~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+.+..+..|+.||+||||+|++++|.+. ...-..++|++..|...+++|.
T Consensus 187 ~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il 237 (285)
T 3rgf_B 187 RTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVIL 237 (285)
T ss_dssp TSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHH
T ss_pred ccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHH
Confidence 88888899999999999999999998765 5678889999999999999986
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.78 E-value=3.4e-18 Score=173.29 Aligned_cols=178 Identities=11% Similarity=0.093 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC-CccHHHHHhhhc--cChHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~Diad~~~--v~v~~ 149 (567)
...+.|.+++..++++ ..+.-.|..+|.++.....+++++...+++||||+|||.++. |.++.||..+++ .+..+
T Consensus 40 ~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~e 117 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHH
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHH
Confidence 3678899999999999 999999999999999988889999999999999999999887 899999999875 79999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHH
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~ 229 (567)
|.+..+.|++.|+.+..+ +.|..|+.||+..++. +.++...|..|++....+....|.+|+.||+||||+|++
T Consensus 118 I~~mE~~IL~~L~f~l~~-----~tp~~fl~~~~~~~~~--~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~ 190 (269)
T 2b9r_A 118 IRQMEMKILRALNFGLGR-----PLPLHFLRRASKIGEV--DVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALK 190 (269)
T ss_dssp HHHHHHHHHHHTTSCCCC-----CCHHHHHHHHHHSSCC--CHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHH
Confidence 999999999999998765 8899999999998875 678889999999998888888999999999999999999
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 230 THGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 230 ~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+.|.+....++...+|+++.+|+.+++++.
T Consensus 191 ~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~ 220 (269)
T 2b9r_A 191 ILDNGEWTPTLQHYLSYTEESLLPVMQHLA 220 (269)
T ss_dssp HHTCCCSCTTHHHHSCCCSSTTTTHHHHHH
T ss_pred HhCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 999988899999999999999999999985
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.76 E-value=2e-17 Score=166.73 Aligned_cols=180 Identities=15% Similarity=0.096 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC-CccHHHHHhhhc--cChHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~Diad~~~--v~v~~ 149 (567)
.+.+.|.+++..++++ ..+.-.|..++.+.....-+..++...+++||||+|||.+++ |.++.||..+.+ .+..+
T Consensus 41 ~lvdwl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 4678999999999999 999999999999999887777788899999999999999988 999999998874 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccc-cCCCChhHHHHHHHHHHH
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI-TTGRKPSGLCGAALYVSA 228 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i-~~GR~P~~IaaAalylAa 228 (567)
|.+..+.|++.|+.+..+ +.|..|+.+|+..++.+ .+++...|..+++....+.. ..|.+|+.||+||||+|+
T Consensus 119 i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~l~~~-~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~ 192 (260)
T 2cch_B 119 VLRMEHLVLKVLTFDLAA-----PTVNQFLTQYFLHQQPA-NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLAL 192 (260)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999998776 89999999999999852 35788899999988655554 789999999999999999
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 229 ~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
++.|.+....+++.++|+++.+|+.+++++..
T Consensus 193 ~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~ 224 (260)
T 2cch_B 193 YTVTGQSWPESLIRKTGYTLESLKPCLMDLHQ 224 (260)
T ss_dssp HHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHhCCCcchHHHHHHhCcCHHHHHHHHHHHHH
Confidence 99988888899999999999999999999863
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.75 E-value=4.2e-18 Score=179.40 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=160.6
Q ss_pred HHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhcc
Q 008401 67 RERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (567)
Q Consensus 67 rer~l-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v 145 (567)
.|..+ ..+.+.|.+++..|+|| ..++.+|..||++++..+.+++++...|++||||+||+.+.+|+++.||..++..
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 34444 34789999999999999 9999999999999999999999999999999999999999999999999876521
Q ss_pred ------------------ChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhh-
Q 008401 146 ------------------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK- 206 (567)
Q Consensus 146 ------------------~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~- 206 (567)
...+|.+..+.|++.|+++..+ .+|..||.+|+..|+. +.++...|..|++...
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v-----~~P~~fL~~~~~~l~~--~~~l~~~A~~ll~~sl~ 183 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTI-----DHPHTHVVKCTQLVRA--SKDLAQTSYFMATNSLH 183 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCC-----CCTTHHHHHHHHHTTC--CHHHHHHHHHHHHHHTT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeC-----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHh
Confidence 2567889999999999998776 8999999999999975 6889999999998765
Q ss_pred hccccCCCChhHHHHHHHHHHHHhcCCCCCHh----hHHHH--hccCHHHHHHHHHHHHccC
Q 008401 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIVKI--VHICEATLMKRLIEFENTD 262 (567)
Q Consensus 207 ~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~----eIa~v--v~Vse~TIrkR~kE~~~t~ 262 (567)
...+..+..|+.||+||||+|++++++++++. .+..+ ++|++.+|+.++++|.+.-
T Consensus 184 ~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 184 LTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp TSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHT
T ss_pred cCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999887653 35555 3789999999999997543
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.73 E-value=7.1e-17 Score=163.64 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC-CccHHHHHhhhc--cChHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~Diad~~~--v~v~~ 149 (567)
...+.|.+++..++++ ..+.-.|..++.+++...-+..++...+++||||+|||.+++ |.++.||+.+.+ .+..+
T Consensus 59 ~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 59 IVATWMLEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence 4568899999999999 899999999999999988888889999999999999999988 999999998864 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHH----HHHHHHHHHHhhhccccCCCChhHHHHHHHH
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV----CDTARDILASMKRDWITTGRKPSGLCGAALY 225 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V----~~~A~~iv~~~~~~~i~~GR~P~~IaaAaly 225 (567)
|.+..+.|++.|+.+..+ +.|..|+.+|+..|+. +.++ ...|..+++....+....|.+|+.||+||||
T Consensus 137 I~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~l~~--~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~ 209 (271)
T 2w96_A 137 LLQMELLLVNKLKWNLAA-----MTPHDFIEHFLSKMPE--AEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVV 209 (271)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 999999999999998776 8999999999999975 3333 3467777776666665679999999999999
Q ss_pred HHHHhcCC---------CCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 226 VSALTHGL---------KFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 226 lAa~~~g~---------~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+|+...+. ..+++.++.++||++.||+.+++++..
T Consensus 210 lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~ 253 (271)
T 2w96_A 210 AAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEA 253 (271)
T ss_dssp HHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99988764 124678999999999999999999963
No 13
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.72 E-value=2.2e-16 Score=164.10 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=146.1
Q ss_pred cchHHHHHH-HHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHH
Q 008401 64 GASRERLME-KAFDDMRQMKNALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140 (567)
Q Consensus 64 ~~srer~l~-~a~~~I~~ia~~L~--Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Dia 140 (567)
....|+.+. .+...|.++|..|+ || +.++.+|..||++++..+.+++.++..|++||||+||+.+++|+++.||+
T Consensus 49 t~eeE~~lr~~~~~~I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v 126 (323)
T 1jkw_A 49 EPHEEMTLCKYYEKRLLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFV 126 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHH
Confidence 344466664 45699999999999 99 99999999999999999999999999999999999999999999999999
Q ss_pred hhhccC-------hHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhh-----CCCCCHHHHHHHHHHHHHhhhc
Q 008401 141 NYLNIN-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----LPGGNKKVCDTARDILASMKRD 208 (567)
Q Consensus 141 d~~~v~-------v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L-----~~~~~~~V~~~A~~iv~~~~~~ 208 (567)
.++..+ ...|.+..+.|++.|+++..+ .+|..||.+|+..| ++..+..+...|..+++.+..+
T Consensus 127 ~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t 201 (323)
T 1jkw_A 127 GNLRESPLGQEKALEQILEYELLLIQQLNFHLIV-----HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALT 201 (323)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTS
T ss_pred HHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEc-----CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 877655 578999999999999998775 89999999999877 2333467889999999998887
Q ss_pred cccCCCChhHHHHHHHHHHHHhcCCCCC
Q 008401 209 WITTGRKPSGLCGAALYVSALTHGLKFS 236 (567)
Q Consensus 209 ~i~~GR~P~~IaaAalylAa~~~g~~~t 236 (567)
.+..+..|+.||+||||+|++++|.+++
T Consensus 202 ~~~l~~~Ps~IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 202 DAYLLYTPSQIALTAILSSASRAGITME 229 (323)
T ss_dssp THHHHSCHHHHHHHHHHHHHHHHSCCCT
T ss_pred cHHHcCCHHHHHHHHHHHHHHHcCCChH
Confidence 7778999999999999999999998765
No 14
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.71 E-value=1.6e-18 Score=138.79 Aligned_cols=52 Identities=38% Similarity=0.610 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCChHHHhhcCCCHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 008401 409 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 460 (567)
Q Consensus 409 ~~~~~~~~~lsdiDD~Eid~~il~eeE~~~K~~iW~~~N~dyl~eq~~K~~~ 460 (567)
++++++++++||+||+|||+|||||+|+++|++||+++|+|||++|++|+++
T Consensus 19 ~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k 70 (72)
T 1ngm_B 19 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLK 70 (72)
T ss_dssp TTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTT
T ss_pred HhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3456889999999999999999999999999999999999999999999864
No 15
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.68 E-value=3.4e-15 Score=149.86 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhC-CCccHHHHHhhhc--cChHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~-~p~tL~Diad~~~--v~v~~ 149 (567)
...+.|.+++..++++ ..+.-.|..|+.+++..+.+++++...+++|||||||+.+. .|.++.||+.+.+ .+..+
T Consensus 54 ~lvdwl~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 54 ILLTWMHLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 3568899999999999 99999999999999998888999999999999999999966 5999999988764 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCC--HHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~--~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylA 227 (567)
|.+..+.|++.|+.+..+ +.|..|+.+|+..++.+.. ..+...|..+++....+....+.+|+.||+||||+|
T Consensus 132 i~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la 206 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEA-----VLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTT 206 (254)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHH
Confidence 999999999999998776 8999999999999974221 123556888888776677778999999999999999
Q ss_pred HHhcC-CCCC----HhhHHHHhccCHHHHHHHHHHHH
Q 008401 228 ALTHG-LKFS----KSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 228 a~~~g-~~~t----~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+..+ .+.+ +..++.++|+++.+|+.+++.+.
T Consensus 207 ~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~ 243 (254)
T 2f2c_A 207 IETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVS 243 (254)
T ss_dssp HHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99873 3455 88999999999999999999986
No 16
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.67 E-value=1.2e-15 Score=153.49 Aligned_cols=180 Identities=13% Similarity=0.043 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC-CccHHHHHhhhc--cChHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~Diad~~~--v~v~~ 149 (567)
...+.|.+++..++++ ..+.-.|..|+.+++..+.+++++...+++|||||||+.+.. |.++.||+.+.+ .+..+
T Consensus 53 ~lvdwl~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 3578899999999999 999999999999999988888889999999999999998765 999999998865 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCC--HHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~--~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylA 227 (567)
|.+..+.|++.|+.+..+ +.|..|+.+|+..++.+.. ..+...|..+++....+....+.+|+.||+||||+|
T Consensus 131 i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA 205 (257)
T 1g3n_C 131 LIDQEKELLEKLAWRTEA-----VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALL 205 (257)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHH
Confidence 999999999999998766 8999999999999974221 234566888887776677778999999999999999
Q ss_pred HHhcCC------CCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 228 ALTHGL------KFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 228 a~~~g~------~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
....|. +.....++.++|+++.+|+.+++.+.
T Consensus 206 ~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~ 243 (257)
T 1g3n_C 206 VPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQIL 243 (257)
T ss_dssp CCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 998885 34578899999999999999999985
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.63 E-value=1e-14 Score=148.78 Aligned_cols=173 Identities=13% Similarity=0.070 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-cccCCCchhHHHHHHHHHHHHHhCC-CccHHHHHhhhc--cChH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR-NFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~-~~~rGR~~~~vaAACLYiACR~e~~-p~tL~Diad~~~--v~v~ 148 (567)
...+.|.+++..++++ ..+.-.|..++.++... +.+++++...+++||||+||+.++. |.++.||+.+++ .+..
T Consensus 52 ~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ 129 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHH
Confidence 3568899999999999 99999999999999987 5778899999999999999999876 899999998874 7899
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCC---------HHHHHHHHHHHHHhhhccccCCCChhHH
Q 008401 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN---------KKVCDTARDILASMKRDWITTGRKPSGL 219 (567)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~---------~~V~~~A~~iv~~~~~~~i~~GR~P~~I 219 (567)
+|.+..+.|++.|+.+..+ +.|..|+.+|+..+++... ......+..+++....+.-..+.+|+.|
T Consensus 130 ei~~mE~~IL~~L~~~l~~-----~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~i 204 (283)
T 1w98_B 130 EILTMELMIMKALKWRLSP-----LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGIL 204 (283)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHH
T ss_pred HHHHHHHHHHHHcCCcCCC-----CCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHH
Confidence 9999999999999998776 8999999999998863211 2233345566666555555689999999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 220 aaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|+||||+|+ .++.+..++|+++.+|+.+++++.
T Consensus 205 AaAai~la~-------~~~~l~~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 205 AASALYHFS-------SSELMQKVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHHHHHHTS-------CHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------ChHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999985 278899999999999999999984
No 18
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.58 E-value=9e-14 Score=143.38 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHh-CCCccHHHHHhhhc--cChH
Q 008401 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN--INVY 148 (567)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e-~~p~tL~Diad~~~--v~v~ 148 (567)
..+.+.|.+++..++|+ ..+.-.|..||.+++....++......++++||||||+.+ ..|.++.+|..+.+ .+..
T Consensus 72 ~~lvdwl~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 34678999999999999 9999999999999999888888899999999999999985 56889999998875 7889
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCC--HHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHH
Q 008401 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (567)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~--~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalyl 226 (567)
+|.+..+.|++.|+.+..+ +.|..||.+|+..++.... ..+...|..+++....+....+.+|+.||+||||+
T Consensus 150 ~i~~mE~~IL~~L~f~l~~-----~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~l 224 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAA-----VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGA 224 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 9999999999999998776 8899999999999964222 23556788888877777777899999999999999
Q ss_pred HHHhcCCCCCH-----hhHHHHhccCHHHHHHHHHHHH
Q 008401 227 SALTHGLKFSK-----SDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 227 Aa~~~g~~~t~-----~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.+.++..... ..+..++|+++.+|+.+++.+.
T Consensus 225 A~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~ 262 (306)
T 3g33_B 225 AVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIE 262 (306)
T ss_dssp HHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999865432 6778999999999999999996
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.35 E-value=3.3e-12 Score=123.29 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~ 153 (567)
...+|.++|+.|+++ +.+.+.|..+++.+.+.+++.||++..+||||||+|||..|.|+++.||+.+++|+..+|++.
T Consensus 108 p~~~i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~ 185 (200)
T 1ais_B 108 PTDYVNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp GGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHH
Confidence 457899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccc
Q 008401 154 YLQLCQVLYIADES 167 (567)
Q Consensus 154 ~~~L~~~L~i~~~~ 167 (567)
|+.|.+.|++..+|
T Consensus 186 ~~~l~~~l~~~~~~ 199 (200)
T 1ais_B 186 YKELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999987543
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.17 E-value=1.2e-11 Score=96.34 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=41.9
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecccccccccccccccC
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA 46 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s~ 46 (567)
+.||.||+..+++|+..|++||..||+|+++++||.+|+|+.++.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSN 56 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCcccccCC
Confidence 379999998899999999999999999999999999999998763
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.12 E-value=2.5e-10 Score=110.74 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~ 153 (567)
....|.++++.|+++ +.+...|..+++.+...++..||++..+||||||+|||..|.++++.+|+.+++|+..+|++.
T Consensus 102 p~~~l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~ 179 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQS 179 (207)
T ss_dssp THHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHH
Confidence 568899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc
Q 008401 154 YLQLCQVLYIADE 166 (567)
Q Consensus 154 ~~~L~~~L~i~~~ 166 (567)
|+.|.+.++...|
T Consensus 180 ~~~l~~~l~~~~p 192 (207)
T 1c9b_A 180 YRLIYPRAPDLFP 192 (207)
T ss_dssp HHHHGGGHHHHSC
T ss_pred HHHHHHHHHHhCh
Confidence 9999999987653
No 22
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=98.97 E-value=3.4e-10 Score=85.42 Aligned_cols=44 Identities=18% Similarity=0.436 Sum_probs=41.1
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceeccccccccccccccc
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s 45 (567)
..||.||+..+++|+..|++||..||+|++++.|+.+++|+.++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 37999999789999999999999999999999999999999875
No 23
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.96 E-value=2.9e-08 Score=99.47 Aligned_cols=178 Identities=9% Similarity=0.009 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhC-CCccHHHHHhhhc--cChHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~-~p~tL~Diad~~~--v~v~~ 149 (567)
...+.|-+++..++++ ..+.-.|..++.+.+...-++......++++|+|||++.+. .|..+.++....+ .+..+
T Consensus 51 ~lvdWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 3568899999999999 89999999999999987777767788899999999999765 4889999988764 68899
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCC--HHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~--~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylA 227 (567)
|.+.-+.|++.|+.+..+ +.|..|+.+|...++.... ..+...|..++.....+.-..+-+|+-||+||++++
T Consensus 129 i~~mE~~IL~~L~w~l~~-----pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~ 203 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADR-----CLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT 203 (252)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH
Confidence 999999999999998776 8899999999999874211 124456666666655555556899999999996544
Q ss_pred HHhcCCCCC----HhhHHHHhccCHHHHHHHHHHHH
Q 008401 228 ALTHGLKFS----KSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 228 a~~~g~~~t----~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
. .+...+ ...+...+|++...|+..++.+.
T Consensus 204 l--~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~ 237 (252)
T 1f5q_B 204 M--NQKYDYYENRIDGVCKSLYITKEELHQCCDLVD 237 (252)
T ss_dssp H--TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred h--ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3 222222 34567788999999998887774
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=98.89 E-value=4e-10 Score=104.62 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=40.1
Q ss_pred CCCCCCC--CCceeecCCCceecCcccceeccccccccccccccc
Q 008401 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (567)
Q Consensus 3 ~Cp~Cgs--~~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s 45 (567)
.||.||+ ..+++|+.+|++||++||+||++++||.+++|+.++
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFs 67 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHH
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcC
Confidence 6999998 479999999999999999999999999999999765
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.77 E-value=7.2e-10 Score=116.00 Aligned_cols=89 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHH
Q 008401 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152 (567)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr 152 (567)
....+|.++|+.|+|+ ..+...|.+|.+.+.+.+++.||++..+||||||+||+.+|.+++++||+++++|+..+|..
T Consensus 234 ~p~~~i~Rf~s~L~l~--~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ 311 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKS 311 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHH
Confidence 4557899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 008401 153 VYLQLCQVLYI 163 (567)
Q Consensus 153 ~~~~L~~~L~i 163 (567)
.|+.|...++.
T Consensus 312 rykel~~~~~~ 322 (345)
T 4bbr_M 312 GYKILYEHRDK 322 (345)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-08 Score=106.94 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~ 153 (567)
...+|.++|+.|+|+ ..+...|.+|.+.+...+++.||++..+||||||+||+..|.+++..+|+.+++|+..+|...
T Consensus 235 p~~~i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ 312 (345)
T 3k7a_M 235 NLTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 356778999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 008401 154 YLQLCQVLY 162 (567)
Q Consensus 154 ~~~L~~~L~ 162 (567)
|+.|...+.
T Consensus 313 ykel~~~~~ 321 (345)
T 3k7a_M 313 YKILYEHRD 321 (345)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998774
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.30 E-value=0.0011 Score=64.95 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=59.6
Q ss_pred hhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCC-CChhHHHHHHHHHHHHhcCCCCCHhhHHHHh
Q 008401 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG-RKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244 (567)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~G-R~P~~IaaAalylAa~~~g~~~t~~eIa~vv 244 (567)
..+|.+++..|++ ++.+..+|..++++.-......+ ++|..|++||||+||++.+..+++++|+.++
T Consensus 32 ~~~i~~v~~~l~L--~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~ 99 (235)
T 1zp2_A 32 WKVVQTFGDRLRL--RQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEA 99 (235)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 3578889999986 89999999999999876666677 9999999999999999999999999999876
No 28
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.29 E-value=0.0031 Score=60.05 Aligned_cols=88 Identities=15% Similarity=0.266 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCc---hhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR---TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~---~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~L 150 (567)
..+.|.++-.+-.+| +.|.+.|..+.+.++...--+|.+ ...|+|||+.||..+.+.|+++.|+--.-+ +..++
T Consensus 15 M~nclr~L~kKs~~~--eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~-sL~Dv 91 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLP--EPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDS-SLGDV 91 (260)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCT-TCCCH
T ss_pred HHHHHHHHHhhccCc--HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhh-hhhHH
Confidence 356788888999999 999999999999998876666654 567999999999999999999998865422 22233
Q ss_pred HHHHHHHHHHhhcc
Q 008401 151 GAVYLQLCQVLYIA 164 (567)
Q Consensus 151 gr~~~~L~~~L~i~ 164 (567)
--.-..+++.|++.
T Consensus 92 elrr~Eiv~~l~l~ 105 (260)
T 3h4c_A 92 ELRRADIVRELHLE 105 (260)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCC
Confidence 33344556666554
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.85 E-value=0.0021 Score=64.52 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~ 153 (567)
....|.+++..++++ ..+...|..+...+.....+-|.++..+||||||+|++..|.+....+++.++|++..+|..+
T Consensus 138 p~~fl~~~~~~~~~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~ 215 (269)
T 2b9r_A 138 PLHFLRRASKIGEVD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPV 215 (269)
T ss_dssp HHHHHHHHHHSSCCC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTH
T ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHH
Confidence 457888999999999 888899999999887666667899999999999999999988877888999999999999999
Q ss_pred HHHHHHHhh
Q 008401 154 YLQLCQVLY 162 (567)
Q Consensus 154 ~~~L~~~L~ 162 (567)
++.|.+.+.
T Consensus 216 ~~~l~~~~~ 224 (269)
T 2b9r_A 216 MQHLAKNVV 224 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.82 E-value=0.0034 Score=62.50 Aligned_cols=88 Identities=8% Similarity=-0.044 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHH-hccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHH
Q 008401 74 AFDDMRQMKNALNIGESD-EIVHVAKRFYGIAV-ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~-~i~e~A~~iyk~a~-~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lg 151 (567)
....|..++..++++ . .+...|..+...+. +...+-+.++..+||||||+|++..+.|....+++.++|++..+|.
T Consensus 139 p~~fl~~~~~~l~~~--~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~ 216 (260)
T 2cch_B 139 VNQFLTQYFLHQQPA--NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLK 216 (260)
T ss_dssp HHHHHHHHHTTCSSC--CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHH
Confidence 567889999999988 5 78888888888865 4443567899999999999999998878888899999999999999
Q ss_pred HHHHHHHHHhhc
Q 008401 152 AVYLQLCQVLYI 163 (567)
Q Consensus 152 r~~~~L~~~L~i 163 (567)
.+++.|.+.+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
No 31
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.59 E-value=0.0071 Score=59.93 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=61.5
Q ss_pred hhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc
Q 008401 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246 (567)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~V 246 (567)
.++|.+++..|++ ++.+..+|..++++.-......+++|..|++||||+||++.+..+++++|+.+++.
T Consensus 35 ~~~i~~v~~~l~l--~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 35 ANLIQEMGQRLNV--SQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHH
Confidence 3578889999986 89999999999999887777889999999999999999999999999999887643
No 32
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.54 E-value=0.0066 Score=61.39 Aligned_cols=86 Identities=12% Similarity=0.146 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~ 153 (567)
.+..|.+++..|+++ ..+...|..|...+......-+..+..+||||||+|++..+.+. ......++++..+|..+
T Consensus 157 P~~fL~~~~~~l~~~--~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~ 232 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQE--DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEI 232 (285)
T ss_dssp SHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHH
T ss_pred hHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHH
Confidence 356888999999998 89999999999998776667788999999999999999988754 45677789999999999
Q ss_pred HHHHHHHhhc
Q 008401 154 YLQLCQVLYI 163 (567)
Q Consensus 154 ~~~L~~~L~i 163 (567)
+..|.+....
T Consensus 233 ~~~il~ly~~ 242 (285)
T 3rgf_B 233 IRVILKLYEQ 242 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.44 E-value=0.0077 Score=60.27 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCCCCchHHH----HHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC---------CccHHHHH
Q 008401 74 AFDDMRQMKNALNIGESDEIV----HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK---------PFLLIDFS 140 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~----e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~---------p~tL~Dia 140 (567)
.+..|..++..++++ .... ..|..+...+.....+-+.++..+||||||+|++..+. +.+..+++
T Consensus 157 p~~fl~~~~~~l~~~--~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~ 234 (271)
T 2w96_A 157 PHDFIEHFLSKMPEA--EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLS 234 (271)
T ss_dssp HHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHH
Confidence 567888999999998 6543 45667766664333335788999999999999987543 23467899
Q ss_pred hhhccChHHHHHHHHHHHHHhhcccc
Q 008401 141 NYLNINVYELGAVYLQLCQVLYIADE 166 (567)
Q Consensus 141 d~~~v~v~~Lgr~~~~L~~~L~i~~~ 166 (567)
.++|++..+|...++.|.+.+.....
T Consensus 235 ~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 235 RVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.44 E-value=0.013 Score=60.23 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=61.1
Q ss_pred hhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC
Q 008401 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247 (567)
Q Consensus 177 ~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vs 247 (567)
.+|.+++..|+...++.+..+|..++++.-......++.|..|++|||||||.+.+..+++++|+.++...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 46778888887113899999999999999877788899999999999999999999999999998876544
No 35
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.33 E-value=0.013 Score=57.88 Aligned_cols=68 Identities=12% Similarity=-0.007 Sum_probs=60.6
Q ss_pred hhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhc
Q 008401 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (567)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~ 245 (567)
.++|.+++..|++ ++.+..+|..++++.-......++.+..|++||||+||++.+..+++++|+.+++
T Consensus 45 ~~~i~~v~~~l~l--~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 45 ARFIFDVGTRLGL--HYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 3578889999986 7999999999999987766778999999999999999999999999999998764
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.25 E-value=0.027 Score=47.63 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=62.5
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCC------CchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHH
Q 008401 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG------RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (567)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG------R~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lg 151 (567)
|+.||-+||++ .+++.|.+++.+... .+..+ -+....+||++|.+||..+..+.-.-+....+++...+.
T Consensus 6 v~dLcVqfgc~---e~~~~a~~lL~~Yk~-~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSCI---EAVNMASKILKSYES-SLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTCG---GGHHHHHHHHHHHHT-TSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHHHH-HhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 78899999999 588888888777542 22211 224679999999999999999999999999999998877
Q ss_pred HHHHHHHHHh
Q 008401 152 AVYLQLCQVL 161 (567)
Q Consensus 152 r~~~~L~~~L 161 (567)
+...++-+.+
T Consensus 82 ~l~~~~e~~~ 91 (95)
T 3m03_A 82 RLCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.06 E-value=0.011 Score=61.86 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=60.7
Q ss_pred hhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhc
Q 008401 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (567)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~ 245 (567)
.++|.+++..|.+ +..+..+|..|+++.-....+.++.|.-|++|||||||++....+++++|+.+++
T Consensus 42 v~wI~ev~~~l~L--~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 42 ANLLQDMGQRLNV--SQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHTTTTC--CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 4578889999986 8999999999999988777788999999999999999999999999999987664
No 38
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.00 E-value=0.024 Score=56.14 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCCCCchHH----HHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHh-CCCcc----HHHHHhhhcc
Q 008401 75 FDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL----LIDFSNYLNI 145 (567)
Q Consensus 75 ~~~I~~ia~~L~Lp~~~~i----~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e-~~p~t----L~Diad~~~v 145 (567)
+..|..++..++++ ... ...|..+...+.-...+-+.++..+||||||+|.+.. +.|.+ ..+++.++|+
T Consensus 153 ~~fl~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~ 230 (254)
T 2f2c_A 153 TDFLIPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230 (254)
T ss_dssp GGSHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc
Confidence 45778888999988 543 4456777666654444467889999999999999986 44565 7889999999
Q ss_pred ChHHHHHHHHHHHHHhh
Q 008401 146 NVYELGAVYLQLCQVLY 162 (567)
Q Consensus 146 ~v~~Lgr~~~~L~~~L~ 162 (567)
+..+|...++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988774
No 39
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.70 E-value=0.025 Score=56.02 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhCCCCchHH----HHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC------CccHHHHHhhh
Q 008401 74 AFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK------PFLLIDFSNYL 143 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i----~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~------p~tL~Diad~~ 143 (567)
.+..|..++..++++ ... ...|..+...+.-...+-+.++..+||||||+|++..+. +.....++.++
T Consensus 151 p~~fl~~~~~~~~~~--~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t 228 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGG--SQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL 228 (257)
T ss_dssp HHHHHHHHHHHHSCS--STTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH
Confidence 567888899999988 433 455777766665444445788999999999999998775 35678899999
Q ss_pred ccChHHHHHHHHHHHHHhh
Q 008401 144 NINVYELGAVYLQLCQVLY 162 (567)
Q Consensus 144 ~v~v~~Lgr~~~~L~~~L~ 162 (567)
|++..+|..+++.|.+.+.
T Consensus 229 ~~~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 229 GCDVSVLQAAVEQILTSVS 247 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
No 40
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=95.30 E-value=0.0064 Score=47.69 Aligned_cols=47 Identities=15% Similarity=0.449 Sum_probs=38.5
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecccccccccccccccCCCccccCccceee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s~G~s~v~G~~v~~~ 59 (567)
++||.|+...+++++++-.+.|..||+||-.. .+|.+++.|..+..+
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P-----------TGGKA~l~~~i~e~l 54 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP-----------TGGKGNIKAEIIEYV 54 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSEEEECC
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeec-----------CCcceeeehhHHhhh
Confidence 37999999999999999999999999999742 356777777766544
No 41
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=95.18 E-value=0.051 Score=57.56 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--cccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhc
Q 008401 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (567)
Q Consensus 71 l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~ 144 (567)
+.-|..+|+.+|.+|+++. ..+.+....+|...+.+ .++++|...+++-+|+|+.||..+..++++||-....
T Consensus 279 y~LAa~Rl~~LC~~L~~~~-~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 279 YRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 3457889999999999872 36777777888877654 6889999999999999999999999999999987654
No 42
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=94.98 E-value=0.07 Score=55.38 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh--ccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhc
Q 008401 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (567)
Q Consensus 70 ~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~--~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~ 144 (567)
.+.-|..+|+.+|..|+++. ..+.+....+|..+.. ..++++|...+++-+|+|+.||..+...++++|-....
T Consensus 214 vy~La~~Rl~~LC~~L~~~~-~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 214 VYRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34457788999999999872 3577888888888765 35789999999999999999999999999999987654
No 43
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.98 E-value=0.0088 Score=46.58 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=36.6
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecccccccccccccccCCCccccCccce
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~ef~e~s~G~s~v~G~~v~ 57 (567)
++||.|+...+++.+++-.+.|..||+||-.. .+|.+++.|..+.
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P-----------TGGKa~l~~~i~~ 60 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVEP-----------TGGKGIVKAKILE 60 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSSCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEecC-----------CCCcEEEEEEEEE
Confidence 37999999999999999999999999999742 3466666666554
No 44
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=94.76 E-value=0.01 Score=48.46 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=28.7
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecc
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
+.||.|+...+++++++-.+.|..||+||-.
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 3799999999999999999999999999974
No 45
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=94.50 E-value=0.013 Score=47.93 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=28.8
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecc
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
++||.|+...+++.+++-.+.|..||+||-+
T Consensus 35 VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 3799999999999999999999999999974
No 46
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.41 E-value=0.11 Score=58.14 Aligned_cols=74 Identities=12% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--cccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhc
Q 008401 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (567)
Q Consensus 70 ~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~ 144 (567)
.+.-|..+|+.+|..|+++. ..+.+....+|..++.. .++++|...+++-+|+|+.||..+..+++++|-....
T Consensus 523 vy~LAa~Rl~~LC~~L~~~~-~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 523 VYRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 34458899999999998772 46788888888887754 5789999999999999999999999999999987543
No 47
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.26 E-value=0.13 Score=52.33 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCC-Ccc----HHHHHhhhccCh
Q 008401 75 FDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFL----LIDFSNYLNINV 147 (567)
Q Consensus 75 ~~~I~~ia~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~t----L~Diad~~~v~v 147 (567)
+..|..+...++++.. ..+...|..|...+.-...+-+.++..+||||||+|++..+. |.. ...++.++|++.
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 4577888888888721 114456776776655444445688999999999999998764 222 367788999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 008401 148 YELGAVYLQLCQVLYI 163 (567)
Q Consensus 148 ~~Lgr~~~~L~~~L~i 163 (567)
..|...+..|.+.+.-
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 48
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=94.23 E-value=0.13 Score=52.38 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-c---ccCCCchhHHHHHHHHHHHHH-hCCCccHHHHHhhhccChHHHH
Q 008401 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVAR-N---FTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELG 151 (567)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~-~---~~rGR~~~~vaAACLYiACR~-e~~p~tL~Diad~~~v~v~~Lg 151 (567)
....+|..|+|+ +.+.+.|..+|+.+... + .+-|.. ...-.||||+||.. ++..++|-.|-..+++++.++-
T Consensus 5 rF~~lC~~Lnld--~~~~~~Aw~~~~~~~~~~~~~~~~~~~~-~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 5 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKK-KELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhccccccCCCccch-HHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 456789999999 99999999999998774 2 344443 44555569999975 6888999999999999987763
No 49
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.07 E-value=0.014 Score=48.04 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.8
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecc
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
++||.|+...+++.+++-.+.|..||+||-.
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 4799999999999999999999999999975
No 50
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.90 E-value=0.17 Score=50.80 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=68.1
Q ss_pred hhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhc-cccCCCChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhc--cCHHHHH
Q 008401 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRD-WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLM 252 (567)
Q Consensus 177 ~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~-~i~~GR~P~~IaaAalylAa~~~g~-~~t~~eIa~vv~--Vse~TIr 252 (567)
++|...+..+++ ..++.-.|..+++++... ....++.+..|++||+|+||++.+. ..+.++++.+++ .+...|.
T Consensus 55 ~wl~~v~~~~~l--~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYKL--HRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTTC--BHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhCC--CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 456677777775 799999999999998765 4567899999999999999999976 568899887663 4555555
Q ss_pred HHHHHHHccCC---CCCCHHHHHH
Q 008401 253 KRLIEFENTDS---GSLTIEDFMA 273 (567)
Q Consensus 253 kR~kE~~~t~s---~~Lt~~ef~~ 273 (567)
+-...+..+=. .--|+-.|..
T Consensus 133 ~mE~~IL~~L~~~l~~~tp~~fL~ 156 (283)
T 1w98_B 133 TMELMIMKALKWRLSPLTIVSWLN 156 (283)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHcCCcCCCCCHHHHHH
Confidence 55444433322 2234555544
No 51
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=93.66 E-value=0.035 Score=44.39 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=23.9
Q ss_pred CCCCCCCCCCceeecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGR-LEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCB-EEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CEEeCCCCEEEcCCCCcee
Confidence 479999985 6677778999999999975
No 52
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=93.57 E-value=0.041 Score=43.87 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.7
Q ss_pred CCCCCCCCCCceeecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGP-LKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCC-CEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 479999986 5677778999999999875
No 53
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=93.38 E-value=0.041 Score=43.76 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCCCCCCCCCceeecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGR-LEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCB-CEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 479999975 6677778999999999975
No 54
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=93.19 E-value=0.05 Score=43.11 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=24.0
Q ss_pred CCCCCCCCCCceeecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
..||.|++. +.++...|.++|..||.+.
T Consensus 11 L~CP~ck~~-L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGP-LRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEE
T ss_pred hCCCCCCCc-CeEeCCCCEEEcCCCCccc
Confidence 379999985 6778889999999999875
No 55
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=93.10 E-value=0.037 Score=45.70 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccceeccccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (567)
.||.||.. .+.++..|.+.|..||.+......
T Consensus 29 ~Cp~CG~~-~v~r~atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 29 ACPNCGED-RVDRQGTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp ECSSSCCE-EEEEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCc-ceeccCCCeEECCCCCCEecCCEe
Confidence 59999974 688999999999999998775543
No 56
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=93.04 E-value=0.048 Score=43.35 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCCCCCCCCceeecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGP-LVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 479999985 6677778999999999975
No 57
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.51 E-value=0.072 Score=39.72 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=21.9
Q ss_pred CCCCCCCCCceeecCCCceecCccccee
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
.||.||+..+..++ .+..+|..||.+.
T Consensus 21 ~CP~CG~~~fm~~~-~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMADH-GDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEEC-SSEEECSSSCCEE
T ss_pred cCCCCCCceEEecC-CCeEECCCCCCEE
Confidence 59999998665544 5889999999874
No 58
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=90.56 E-value=1.2 Score=37.65 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=53.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHhhhcc------ccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHH
Q 008401 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDW------ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252 (567)
Q Consensus 179 I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~~------i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIr 252 (567)
|..+|-.|+. .+++..|.+|++..+..- -..-.+|. .++||+|.||+.+..+++...+...+|++..-..
T Consensus 6 v~dLcVqfgc---~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSC---IEAVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTC---GGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 5567777773 457777888887765421 01235666 5668999999999999999999988888776555
Q ss_pred HHHHHH
Q 008401 253 KRLIEF 258 (567)
Q Consensus 253 kR~kE~ 258 (567)
+-...+
T Consensus 82 ~l~~~~ 87 (95)
T 3m03_A 82 RLCKQL 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 59
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=90.34 E-value=0.15 Score=38.72 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCceeecCCCceecCcccce
Q 008401 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKV 29 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (567)
|..||.||+..+.. ...+...|..||..
T Consensus 18 ~~fCPkCG~~~~ma-~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA-EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCE-ECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEe-ccCCEEECCCCCCE
Confidence 45799999975533 34579999999997
No 60
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=88.23 E-value=8.5 Score=31.94 Aligned_cols=100 Identities=10% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHH
Q 008401 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (567)
Q Consensus 118 vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~ 197 (567)
+..++-||.-.. ..++++.++|+.++++...|.+.|++. +| ..|..||.+. -...
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~~ 58 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS---RG----------YSPMAFAKRV-----------RLQH 58 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH---TS----------SCHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH---hC----------cCHHHHHHHH-----------HHHH
Confidence 444555665443 457999999999999999998887744 33 4466666543 0111
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHh
Q 008401 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (567)
Q Consensus 198 A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 274 (567)
|.+++ ..+. ..++.+||..+|.+ .....+.++.+. .+||.+|++.
T Consensus 59 A~~lL---------------------------~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~ 105 (108)
T 3mn2_A 59 AHNLL---------------------------SDGATPTTVTAAALSCGFSNLGHFARDYRDMF-----GEKPSETLQR 105 (108)
T ss_dssp HHHHH---------------------------HSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHH---------------------------HcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 22221 1122 26888899988875 557888887776 5788888765
No 61
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=87.72 E-value=0.34 Score=39.28 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=26.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|...|++|||+.+|||..||++-|+.|.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999885
No 62
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=87.72 E-value=11 Score=31.32 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHH
Q 008401 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196 (567)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~ 196 (567)
.+..++-||--.... ++++.++|+.++++...|.+.|++. +| ..|..||.+. -..
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~ 60 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE---MG----------EHFTDYLNRY-----------RVN 60 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HHH
Confidence 345556666655444 8999999999999999998887754 33 4455665432 011
Q ss_pred HHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHHccCCCCCCHHHHHHh
Q 008401 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 274 (567)
Q Consensus 197 ~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~V-se~TIrkR~kE~~~t~s~~Lt~~ef~~~ 274 (567)
. |.-+|. .-..++.+||..+|. +.....+.++... .+||.+|++.
T Consensus 61 ~------------------------A~~lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 106 (108)
T 3oou_A 61 Y------------------------AKEELL----QTKDNLTIIAGKSGYTDMAYFYRQFKKHT-----GETPNRYRKI 106 (108)
T ss_dssp H------------------------HHHHHH----HCCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred H------------------------HHHHHH----cCCCCHHHHHHHcCCCChHHHHHHHHHHh-----CcCHHHHHHH
Confidence 1 221221 134578888888887 5567777777765 5777777654
No 63
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=87.69 E-value=2 Score=48.08 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhcc----c-cCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHH
Q 008401 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARN----F-TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150 (567)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~----~-~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~L 150 (567)
....+|..|+|+ +.+.+.|.+.|+.....+ . +-| ...++.|+.+|.||+.+|..++|-.|-...++++.++
T Consensus 7 ~f~~lC~~Ln~d--~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F 82 (656)
T 4elj_A 7 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF 82 (656)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH
Confidence 457899999999 999999999999987422 1 233 4566777777888888999999999999999988766
No 64
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.66 E-value=0.32 Score=34.08 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=24.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
...|.++||+.+||+..||.+.++.+..
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 3469999999999999999999987754
No 65
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=86.54 E-value=11 Score=30.86 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHH
Q 008401 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (567)
Q Consensus 118 vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~ 197 (567)
+..+.-||--....-++++.++|+.++++...|.+.|++. +| ..|..||.+. -...
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~g----------~s~~~~~~~~-----------Rl~~ 59 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN---FG----------IPFQDYLLQK-----------RMEK 59 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HHHH
Confidence 3344556554444558999999999999999998877754 33 4456666532 0111
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHHccCCCCCCHHHHH
Q 008401 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFM 272 (567)
Q Consensus 198 A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~V-se~TIrkR~kE~~~t~s~~Lt~~ef~ 272 (567)
|.+ +|. .-..++.+||..+|. +.....+.++... .+||.+|+
T Consensus 60 A~~------------------------lL~----~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR 102 (103)
T 3lsg_A 60 AKL------------------------LLL----TTELKNYEIAEQVGFEDVNYFITKFKKYY-----QITPKQYR 102 (103)
T ss_dssp HHH------------------------HHH----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHT
T ss_pred HHH------------------------HHH----CCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHh
Confidence 211 111 124677888888887 5567877777765 45666664
No 66
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=85.08 E-value=10 Score=38.20 Aligned_cols=105 Identities=6% Similarity=-0.002 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--ccc-CCCchhHHHHHHHHHHHHH-hCCCccHHHHHhhhccChHH
Q 008401 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFT-KGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYE 149 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~-rGR~~~~vaAACLYiACR~-e~~p~tL~Diad~~~v~v~~ 149 (567)
..++|.+|...-+++ ..+.=.|..|+.++... ++. .......+..+||-+|.+- .....+-..+|.+.|+++.+
T Consensus 77 I~~Yl~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 346788888888999 88888888777776653 343 3456677888999999985 67788899999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHhhh
Q 008401 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186 (567)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L 186 (567)
|...-+.++..|+.++. ++++.|...+...+
T Consensus 155 LN~LE~eFL~lLdf~L~------V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 155 LNILENDFLKRVNYRII------PRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHTTTTCCS------CCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCcee------eCHHHHHHHHHHHh
Confidence 99999999999998764 66777776555444
No 67
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=83.97 E-value=0.49 Score=35.87 Aligned_cols=31 Identities=19% Similarity=0.540 Sum_probs=21.7
Q ss_pred CCCCCCCCCCceee---------cCCCceecCcccceecc
Q 008401 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKVLED 32 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D---------~~~G~~VC~~CG~Vlee 32 (567)
..||.||.....+. +.+-.++|.+||..-.+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 47999999865432 12336899999987544
No 68
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=81.45 E-value=0.8 Score=40.58 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccceec
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
.||.|++.-.-.| ...+||..||.--.
T Consensus 29 ~CP~C~seytYeD--g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYTYED--GALLVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCCEEC--SSSEEETTTTEEEC
T ss_pred CCCCCCCcceEec--CCeEECCccccccC
Confidence 6999999855443 56899999998763
No 69
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=79.69 E-value=1.2 Score=38.60 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCceeec---CCCceecCcccceec
Q 008401 1 MVWCSSCARHVTGHRP---YDSQLCCDRCGKVLE 31 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~---~~G~~VC~~CG~Vle 31 (567)
|..||.||+-...... ....++|..||.+..
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 5689999987443321 122699999999764
No 70
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=79.45 E-value=0.83 Score=38.67 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=11.5
Q ss_pred CCceecCccccee
Q 008401 18 DSQLCCDRCGKVL 30 (567)
Q Consensus 18 ~G~~VC~~CG~Vl 30 (567)
.|.+||..||...
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 6899999999974
No 71
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=78.33 E-value=1.3 Score=33.66 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=20.2
Q ss_pred CCCCCCCCCceeecCCCceecC--ccccee
Q 008401 3 WCSSCARHVTGHRPYDSQLCCD--RCGKVL 30 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~--~CG~Vl 30 (567)
.||.|++. +.++. |.++|. .||...
T Consensus 12 ~CP~c~~~-L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 12 ACPACHAP-LEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCSSSCSC-EEEET--TEEEECSSSCCCEE
T ss_pred eCCCCCCc-ceecC--CEEEcCCcCCCcEE
Confidence 79999986 44443 999999 999874
No 72
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.81 E-value=1.1 Score=36.81 Aligned_cols=32 Identities=22% Similarity=0.584 Sum_probs=26.1
Q ss_pred CCCCCCCCCceeecCCCceecCcccceeccccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (567)
.||.||+.. +.....|-..|..||.++.....
T Consensus 37 ~CpfCGk~~-vkR~a~GIW~C~kCg~~~AGGAy 68 (83)
T 3j21_i 37 TCPVCGRKA-VKRISTGIWQCQKCGATFAGGAY 68 (83)
T ss_dssp CCSSSCSSC-EEEEETTEEEETTTCCEEECCSS
T ss_pred CCCCCCCce-eEecCcCeEEcCCCCCEEeCCcc
Confidence 699999985 45567899999999999876554
No 73
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=77.27 E-value=0.79 Score=33.61 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
...|+++||..+|||..||++.++
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999999874
No 74
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=77.03 E-value=0.68 Score=35.76 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCceeecCCCceecCcccceec
Q 008401 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
|.+|+.||...+ ..+|..||....
T Consensus 6 mr~C~~CgvYTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 6 MKKCPKCGLYTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CEECTTTCCEES-------SSBCSSSCSBCB
T ss_pred ceeCCCCCCEec-------cccCcCCCCcCC
Confidence 457999987643 458999998754
No 75
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=76.98 E-value=0.94 Score=31.25 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=20.6
Q ss_pred CCCCCCCCCCcee--ecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGH--RPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~--D~~~G~~VC~~CG~Vl 30 (567)
+.||.|++.+..+ +...-.+.|..||..-
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 5799999985433 3333467799999863
No 76
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=76.81 E-value=1.3 Score=37.08 Aligned_cols=31 Identities=26% Similarity=0.595 Sum_probs=25.1
Q ss_pred CCCCCCCCCceeecCCCceecCcccceecccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHN 34 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~ 34 (567)
.||.||+..+ .....|-..|..||.++....
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 38 FCEFCGKFAV-KRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp CCTTTCSSCB-EEEETTEEECSSSCCEEECCS
T ss_pred cCcccCCCee-EecCcceEEcCCCCCEEeCCc
Confidence 6999999854 456789999999999876543
No 77
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=76.40 E-value=2.7 Score=38.11 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCC
Q 008401 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 263 (567)
Q Consensus 228 a~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s 263 (567)
....+.+.|..+||+.+|+|+.|+++|++.+.+..-
T Consensus 11 ~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 334467889999999999999999999999975543
No 78
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=76.26 E-value=1.2 Score=43.64 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.3
Q ss_pred CCCCCCCC-CceeecCCCceecCcccce
Q 008401 3 WCSSCARH-VTGHRPYDSQLCCDRCGKV 29 (567)
Q Consensus 3 ~Cp~Cgs~-~iv~D~~~G~~VC~~CG~V 29 (567)
.||.||++ .+-++ .+|...|.+||.-
T Consensus 16 ~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 69999995 44444 3688999999975
No 79
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=75.62 E-value=3.5 Score=33.36 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhcccc
Q 008401 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166 (567)
Q Consensus 122 CLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~ 166 (567)
-|+-+.+..|.|....||+..+|++.++|.++++.|.+.-.|..|
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 456678899999999999999999999999999999998876543
No 80
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=74.70 E-value=1.5 Score=35.01 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=25.7
Q ss_pred CCCCCCCCCceeecCCCceecCcccceeccccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (567)
.||.||... +.....|-..|..||.++.....
T Consensus 28 ~C~fCgk~~-vkR~a~GIW~C~~C~~~~AGGAy 59 (72)
T 3jyw_9 28 DCSFCGKKT-VKRGAAGIWTCSCCKKTVAGGAY 59 (72)
T ss_dssp CCSSCCSSC-BSBCSSSCBCCSSSCCCCCCSSS
T ss_pred cCCCCCCce-eEecCCCeEECCCCCCEEeCCcc
Confidence 699999885 45567899999999998876544
No 81
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=74.04 E-value=8.7 Score=35.37 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHhhhc--cChHHHHHHHHHHHHHhhcccccc--------ccccCCc--hhhHHHHHh
Q 008401 117 QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELGAVYLQLCQVLYIADESN--------VLKQVDP--SIFLHKFTD 184 (567)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~Diad~~~--v~v~~Lgr~~~~L~~~L~i~~~~~--------~~~~vdP--~~~I~Rf~~ 184 (567)
.++=|.||++ +-|+++.+++.+++ ++...+......|...+.-..... +.-...| ..||.+|..
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~ 85 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLA 85 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHS
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 4566788876 78999999999999 999999999988888774211110 1001111 122222211
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHH-HHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHH
Q 008401 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL-YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 185 ~L~~~~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAal-ylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
.+.|..+--|++ -+|...+..++|..+|+++.||+ +.+.++++
T Consensus 86 ----------------------------~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L 129 (162)
T 1t6s_A 86 ----------------------------PVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRL 129 (162)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHH
T ss_pred ----------------------------ccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHH
Confidence 112333444454 44444556899999999999998 33444444
No 82
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=73.97 E-value=1.2 Score=38.73 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=25.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccceeccccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (567)
.||.||... +.....|-..|..||.++.-...
T Consensus 62 tCPfCGk~~-vKR~avGIW~C~~Cgk~fAGGAy 93 (116)
T 3cc2_Z 62 ACPNCGEDR-VDRQGTGIWQCSYCDYKFTGGSY 93 (116)
T ss_dssp ECSSSCCEE-EEEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCce-eEecCceeEECCCCCCEEECCCc
Confidence 599999854 45556899999999999775543
No 83
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=73.76 E-value=1.3 Score=38.96 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCc-eee--cCCCceecCcccceec
Q 008401 1 MVWCSSCARHVT-GHR--PYDSQLCCDRCGKVLE 31 (567)
Q Consensus 1 M~~Cp~Cgs~~i-v~D--~~~G~~VC~~CG~Vle 31 (567)
|..||.||.-.. ..| ...+.++|..||....
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 457999997532 233 3356899999999765
No 84
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.34 E-value=1.2 Score=35.50 Aligned_cols=27 Identities=22% Similarity=0.685 Sum_probs=17.8
Q ss_pred CCCCCCCCCceeecCCCceecCcccc-eec
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGK-VLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~-Vle 31 (567)
.|+.||...-+. ....+.|..||. ||-
T Consensus 30 ~C~~CG~~~e~~--~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLS--RTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCC--TTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeC--CCCCccCCCCCceEeE
Confidence 599998862222 334567999998 664
No 85
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=73.23 E-value=1.7 Score=36.39 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCCCCCCceeecCCCceecCcccceeccccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (567)
.||.||...+ .....|-..|..||.++.....
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 69 (92)
T 3izc_m 38 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAY 69 (92)
T ss_dssp CCSSSCSSCC-EEEETTEEECTTTCCEEECCSS
T ss_pred cCCCCCCcee-eecccceEEcCCCCCEEeCCcc
Confidence 6999998854 4567899999999998765443
No 86
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=72.90 E-value=1.5 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCCCCCCceeecCCCceecCcccceeccccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (567)
.||.||...+ .....|-..|..||.++.-...
T Consensus 29 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 60 (73)
T 1ffk_W 29 KCPVCGFPKL-KRASTSIWVCGHCGYKIAGGAY 60 (73)
T ss_pred cCCCCCCcee-EEEEeEEEECCCCCcEEECCCc
Confidence 6999998743 4456899999999999876544
No 87
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=72.23 E-value=16 Score=37.03 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=61.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHhhh-cccc--CCCChhHHHHHHHHHHHHh-cCCCCCHhhHHHHhccCHHHHHHHH
Q 008401 180 HKFTDRLLPGGNKKVCDTARDILASMKR-DWIT--TGRKPSGLCGAALYVSALT-HGLKFSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 180 ~Rf~~~L~~~~~~~V~~~A~~iv~~~~~-~~i~--~GR~P~~IaaAalylAa~~-~g~~~t~~eIa~vv~Vse~TIrkR~ 255 (567)
..+|..|.+ +..+...|+++.+.+.. +.+. +--...-..+||||+|+.- .|..+|+.+|-+.++++-..-=+++
T Consensus 7 ~~lC~~Lnl--d~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k~ 84 (304)
T 2qdj_A 7 TALCQKLKI--PDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNLL 84 (304)
T ss_dssp HHHHHHTTC--CHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHHHH
Confidence 346778765 78899999999999876 2321 1123555667779999953 3556888888888888877666666
Q ss_pred HHHHccCCCCCCHHHHHHhHHhhhhc
Q 008401 256 IEFENTDSGSLTIEDFMARKKELHEG 281 (567)
Q Consensus 256 kE~~~t~s~~Lt~~ef~~~~~~le~e 281 (567)
+.. + ...+|.+..+.|+..
T Consensus 85 ~~~-----d--~~~~~~~~i~~Le~~ 103 (304)
T 2qdj_A 85 KEI-----D--TSTKVDNAMSRLLKK 103 (304)
T ss_dssp TTS-----C--CCHHHHHHHHHHHHH
T ss_pred HHc-----C--CCHHHHHHHHHHHHH
Confidence 652 1 556776665555544
No 88
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=71.47 E-value=1.6 Score=37.15 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=24.9
Q ss_pred CCCCCCCCCceeecCCCceecCcccceecccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHN 34 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~ 34 (567)
.||.||... +.....|-..|..||.++....
T Consensus 38 ~CpfCgk~~-vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 38 GCPFCGKVA-VKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp ECTTTCCEE-EEEEETTEEEETTTTEEEECCS
T ss_pred CCCCCCCce-eeecCcceEEcCCCCCEEeCCc
Confidence 599999875 4556789999999999987543
No 89
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=71.03 E-value=3.8 Score=37.67 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
+-+.|..+||+.+|+|+.|+++|++.|.+..
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4589999999999999999999999997554
No 90
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=70.35 E-value=3.7 Score=33.35 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.+.|..+||+.+||+..||++++..|.
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3579999999999999999999999885
No 91
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.32 E-value=3.8 Score=32.78 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=25.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-+.|..+||+.+||+..||++++..+.
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478999999999999999999999885
No 92
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=70.15 E-value=2.3 Score=37.97 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCcee-ecC--CCceecCccccee
Q 008401 1 MVWCSSCARHVTGH-RPY--DSQLCCDRCGKVL 30 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~-D~~--~G~~VC~~CG~Vl 30 (567)
|..||.||+-.+.. |.. ...++|..||.+.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 45799999864332 221 2369999999975
No 93
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=70.07 E-value=4.3 Score=36.13 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
+-+.|..+||+.+|+|..|+++|++.+.+..
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999996543
No 94
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=69.95 E-value=13 Score=30.40 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 222 AalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
+.-||-....+...++.+||..+|+|+.++++.+++.. .+|+.+|....
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----g~s~~~~~~~~ 55 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF-----GIPFQDYLLQK 55 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 34466666555589999999999999999999999885 57888987654
No 95
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.57 E-value=4.5 Score=35.99 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=26.7
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+-+.|..+||+.+|+|..|+++|++.+.+
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356799999999999999999999998853
No 96
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=69.17 E-value=1.9 Score=29.58 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=10.6
Q ss_pred CCCCCCCCCceeecCCCceec
Q 008401 3 WCSSCARHVTGHRPYDSQLCC 23 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC 23 (567)
.|+.||.-..++....|.++|
T Consensus 8 ~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 8 KCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp ECTTTCCEEEEEECCSSCEEE
T ss_pred EcCCCCcEEEEEeCCCcCEEe
Confidence 466665433333344556666
No 97
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=69.05 E-value=5.1 Score=35.46 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=27.9
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
.+-+.|..+||+.+|+|.+|+++|++.+.+..
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45579999999999999999999999996443
No 98
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.64 E-value=4.8 Score=35.71 Aligned_cols=30 Identities=7% Similarity=0.316 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+-+.|..+||+.+|+|..|+++|++.+.+
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356799999999999999999999999863
No 99
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=68.59 E-value=2 Score=31.84 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=19.5
Q ss_pred CCCCCCCCCCceee---------cCCCceecCcccce
Q 008401 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKV 29 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D---------~~~G~~VC~~CG~V 29 (567)
..||.||....++= +.+-.++|.+||..
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 47999999865331 22346899999963
No 100
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=68.50 E-value=13 Score=35.59 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHhhhccccCC---CChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 191 NKKVCDTARDILASMKRDWITTG---RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 191 ~~~V~~~A~~iv~~~~~~~i~~G---R~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+..|...|..|++.+.-..--.| -+|.-+||||+.+|+.-.+.+++..|+-- ..-+-..|.-|.-|+.
T Consensus 29 ~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~-lD~sL~Dvelrr~Eiv 99 (260)
T 3h4c_A 29 PEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC-LDSSLGDVELRRADIV 99 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH-HCTTCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH-HhhhhhHHHHHHHHHH
Confidence 78999999999987643222223 57999999999999999999999988643 2333335666666663
No 101
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=68.26 E-value=4.9 Score=35.47 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
+-+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999643
No 102
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=68.22 E-value=3.7 Score=30.39 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|+.||+.++..+.
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 356899999999999999999988764
No 103
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=68.09 E-value=46 Score=34.29 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHh----------CCCccHHHHHhhhccChHHHHHHHHHHHHHhhcccc-------------------
Q 008401 116 EQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE------------------- 166 (567)
Q Consensus 116 ~~vaAACLYiACR~e----------~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~------------------- 166 (567)
..+.|.|+=++...+ +..+++--|-++++++.+++.++.--+++.-. .++
T Consensus 105 ~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~-~LprelvkHL~~iEe~iLesla 183 (347)
T 2r7g_A 105 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG-NLTREMIKHLERCEHRIMESLA 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHH
Confidence 568888888776644 23677778899999999999988777666511 000
Q ss_pred -----ccc--cccCCc--------hhh-----------HHHHHhhhCCCCCHHHHHHHHHHHHHhh--hccccCCCChhH
Q 008401 167 -----SNV--LKQVDP--------SIF-----------LHKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSG 218 (567)
Q Consensus 167 -----~~~--~~~vdP--------~~~-----------I~Rf~~~L~~~~~~~V~~~A~~iv~~~~--~~~i~~GR~P~~ 218 (567)
|-+ .....+ ..| |..+|..|.+. .+++...++.+++.+. ...+..+|+---
T Consensus 184 W~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~-~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQ 262 (347)
T 2r7g_A 184 WLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSE-HPELEHIIWTLFQHTLQNEYELMRDRHLDQ 262 (347)
T ss_dssp GSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHCGGGGTTSCHHH
T ss_pred hccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHhChHhhcCCcHHH
Confidence 000 000001 111 34567777532 3345555666665543 467889999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVK 242 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~ 242 (567)
|.-.|||..|+.++..+|.++|..
T Consensus 263 iilCaiY~i~Kv~~~~~tF~~Ii~ 286 (347)
T 2r7g_A 263 IMMCSMYGICKVKNIDLKFKIIVT 286 (347)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999998888888876
No 104
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=67.94 E-value=5 Score=36.16 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=26.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
+-+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 557899999999999999999999999644
No 105
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=67.61 E-value=14 Score=30.61 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
|.-+.-||-..... ++++.+||..+|+|..++.+.+++.. .+|+.+|....
T Consensus 7 i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 57 (108)
T 3oou_A 7 IQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEM-----GEHFTDYLNRY 57 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 44455566666544 79999999999999999999999885 57888887653
No 106
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=67.59 E-value=30 Score=33.82 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCCCCchH----HHHHHHHHHHHHH-hccccCCCchhHHHHHHHHHHHHHhCCCcc----HHHHHhhhc
Q 008401 74 AFDDMRQMKNALNIGESDE----IVHVAKRFYGIAV-ARNFTKGRRTEQVQASCLYLACRQKSKPFL----LIDFSNYLN 144 (567)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~----i~e~A~~iyk~a~-~~~~~rGR~~~~vaAACLYiACR~e~~p~t----L~Diad~~~ 144 (567)
.+..|..+...++++ .. +...|..+...+. +..|+ .-++..+||||+..+ ..+.+.. ...++..++
T Consensus 149 p~~FL~~~l~~~~~~--~~~~~~~~~~a~~~l~~~l~d~~~l-~~~PS~iAaaa~~~~--l~~~~~~~~~~~~~L~~~t~ 223 (252)
T 1f5q_B 149 STDLICYILHIMHAP--REDYLNIYNLCRPKIFCALCDGRSA-MKRPVLITLACMHLT--MNQKYDYYENRIDGVCKSLY 223 (252)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHCHHHH-TSCHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHHHhchhhh-ccCHHHHHHHHHHHH--hccCCCchhhHHHHHHHHHC
Confidence 566788888888887 43 3445655555543 34454 456788888885444 3444433 345677899
Q ss_pred cChHHHHHHHHHHHHHhh
Q 008401 145 INVYELGAVYLQLCQVLY 162 (567)
Q Consensus 145 v~v~~Lgr~~~~L~~~L~ 162 (567)
++...|..++..|.+.|.
T Consensus 224 ~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 224 ITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 107
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=67.30 E-value=44 Score=32.04 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=0.0
Q ss_pred cCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCC
Q 008401 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189 (567)
Q Consensus 110 ~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~ 189 (567)
........+..+.-||.-.... ++++.++|+.+++++..|.+.|+. .. ..|..||.+.
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~-~~sl~~lA~~~~~S~~~l~r~fk~-~G-------------~t~~~~l~~~------- 220 (276)
T 3gbg_A 163 FITDDLDAMEKISCLVKSDITR-NWRWADICGELRTNRMILKKELES-RG-------------VKFRELINSI------- 220 (276)
T ss_dssp SSCCTTCHHHHHHHHHHHTTTS-CCCHHHHHHHHTCCHHHHHHHHHT-TT-------------CCHHHHHHHH-------
T ss_pred cccchHHHHHHHHHHHHHhhcC-CCCHHHHHHHHCcCHHHHHHHHHH-cC-------------CCHHHHHHHH-------
Q ss_pred CCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHHccCCCCCCH
Q 008401 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTI 268 (567)
Q Consensus 190 ~~~~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~V-se~TIrkR~kE~~~t~s~~Lt~ 268 (567)
-...|.+++..-. .|+.+||..+|- +.+...+.+|... -+||
T Consensus 221 ----Rl~~A~~lL~~~~----------------------------~si~eIA~~~Gf~~~s~F~r~Fkk~~-----G~tP 263 (276)
T 3gbg_A 221 ----RISYSISLMKTGE----------------------------FKIKQIAYQSGFASVSYFSTVFKSTM-----NVAP 263 (276)
T ss_dssp ----HHHHHHHHHHHTC----------------------------CCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCH
T ss_pred ----HHHHHHHHHhCCC----------------------------CCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCH
Q ss_pred HHHHHh
Q 008401 269 EDFMAR 274 (567)
Q Consensus 269 ~ef~~~ 274 (567)
.+|++.
T Consensus 264 ~~yR~~ 269 (276)
T 3gbg_A 264 SEYLFM 269 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 108
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=67.18 E-value=5.5 Score=34.71 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.0
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+-+.|..+||+.+|+|..|++++++.+.+.
T Consensus 15 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3557899999999999999999999998643
No 109
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=67.15 E-value=14 Score=30.58 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
|.-+.-||-....+.+.++.+||..+|+|..++.+.+++.. .+|+.+|....
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 56 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL-----GISVLSWREDQ 56 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 34445566665555789999999999999999999999865 57888887653
No 110
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.99 E-value=8.1 Score=28.73 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCCHhhHHHHh-----ccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIV-----HICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv-----~Vse~TIrkR~kE~~ 259 (567)
+-..|+.+|+..+ +||..||++-++++.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4579999999999 999999999999664
No 111
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=66.45 E-value=16 Score=30.89 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=40.4
Q ss_pred cCCCchhHHHH--HHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 110 TKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 110 ~rGR~~~~vaA--ACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
.++|....+.| .+.|++-.. +..+|.+|+..||-+..++..+++++.+.+.-
T Consensus 27 s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 27 GPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 35565555555 667775544 67889999999999999999999999998764
No 112
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.38 E-value=5.5 Score=36.56 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+-++|..+||+.+|+|..|+++|++.+.+.
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3557999999999999999999999998643
No 113
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.20 E-value=0.87 Score=32.25 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.|+.+||..+|||..||.+.++.+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 7999999999999999999877553
No 114
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.95 E-value=6.9 Score=30.98 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=25.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-..|..|||+.++|+..||++.++.|.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999999885
No 115
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=65.34 E-value=2.1 Score=34.09 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceecc
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
+.|| ||.-.+ .+...-..-|. ||.++.-
T Consensus 5 v~C~-C~~~~~-~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 5 FRCD-CGRALY-SREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEET-TSCCEE-EETTCSEEEET-TTEEEEC
T ss_pred EECC-CCCEEE-EcCCCcEEECC-CCCeeee
Confidence 4699 998754 44456678899 9999863
No 116
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=64.93 E-value=4.6 Score=31.26 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=20.3
Q ss_pred CCHhhHHHHhccCHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~k 256 (567)
+|++|||+.+|||..||.+-+.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4899999999999999999886
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=64.80 E-value=6.5 Score=31.39 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...|+|..||++++..+.
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 447999999999999999999998775
No 118
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=64.80 E-value=1.8 Score=33.34 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCceeecCCCceecCcccceec
Q 008401 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
|..|+.||...+ ..+|..||....
T Consensus 5 mr~C~~Cg~YTL-------k~~CP~CG~~t~ 28 (60)
T 2aus_D 5 IRKCPKCGRYTL-------KETCPVCGEKTK 28 (60)
T ss_dssp CEECTTTCCEES-------SSBCTTTCSBCE
T ss_pred ceECCCCCCEEc-------cccCcCCCCccC
Confidence 568999987533 348999998643
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=64.63 E-value=6.9 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|..||+++++.+.
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345999999999999999999998764
No 120
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=64.56 E-value=7.3 Score=35.59 Aligned_cols=47 Identities=19% Similarity=0.066 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 114 ~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+...-+-+.+|+|.+..+.|.+..+||+.++++...|.+.+.+|.+.
T Consensus 25 ~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 25 KGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44556668889998666679999999999999999999999988774
No 121
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=64.32 E-value=6.6 Score=34.79 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=26.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
+-+.|..+||+.+|+|..|++++++.+.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999643
No 122
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=64.15 E-value=9 Score=37.04 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhh
Q 008401 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (567)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~ 162 (567)
..++=|.||++ +-|+++.+++.+++++...+......|...+.
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~ 59 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADELT 59 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 35666888875 78999999999999999999999999988773
No 123
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=63.34 E-value=5.7 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=25.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.-.+++.|+|+.++||+.|||+=+.++.
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3578999999999999999999988774
No 124
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=62.55 E-value=2.8 Score=30.55 Aligned_cols=23 Identities=30% Similarity=0.876 Sum_probs=14.6
Q ss_pred CCCCCCCCCceeecCCCc----------eecCcccc
Q 008401 3 WCSSCARHVTGHRPYDSQ----------LCCDRCGK 28 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~----------~VC~~CG~ 28 (567)
.|+.||- ++|++.|+ .+|..||.
T Consensus 6 ~C~vCGy---vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 6 VCNVCGY---EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EETTTCC---EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCe---EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4777773 56655553 37777775
No 125
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.96 E-value=2.5 Score=31.50 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.7
Q ss_pred CCCCCCCCCceeecCCCceecCcccce
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (567)
.||.||+. ...|-..|..||.+
T Consensus 16 iCpkC~a~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGAT-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCE-----ECTTCSSCSSSSSC
T ss_pred cCCCCCCc-----CCCCceecCCCCCc
Confidence 69999986 34799999999987
No 126
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.95 E-value=21 Score=33.66 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
.+.|+.+||..+|+|..|+.+-+++|.+..
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g 205 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKREN 205 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999997543
No 127
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.91 E-value=8.1 Score=29.97 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=24.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|++..||+.++..+.
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 128
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=61.74 E-value=7.3 Score=39.23 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 229 ~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
..+.-.+|+.+||+.++||+.|||+=|+++.+.
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566999999999999999999999988653
No 129
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=61.72 E-value=7.8 Score=29.88 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
++-.+|..+||+.++|+..||.+.++.|.+
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999864
No 130
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=61.23 E-value=22 Score=29.24 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
|.-+.-||..... .+.|+.+||..+|+|..++.+.+++.. .+|+.+|....
T Consensus 4 i~~~~~~i~~~~~-~~~~~~~lA~~~~~s~~~l~r~fk~~~-----G~s~~~~~~~~ 54 (108)
T 3mn2_A 4 VRQVEEYIEANWM-RPITIEKLTALTGISSRGIFKAFQRSR-----GYSPMAFAKRV 54 (108)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHTCCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHccc-CCCCHHHHHHHHCCCHHHHHHHHHHHh-----CcCHHHHHHHH
Confidence 3344556666554 469999999999999999999999875 57888887654
No 131
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=61.22 E-value=10 Score=28.75 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=24.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...|+|..||++++....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999987664
No 132
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=60.99 E-value=5.9 Score=33.68 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-..||++||+.+|||.+||.+-=+.+.
T Consensus 57 ge~TQREIA~~lGiS~stISRi~r~L~ 83 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRGSNSLK 83 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHHHHHHH
Confidence 359999999999999999998866554
No 133
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=60.53 E-value=6.2 Score=32.25 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.|..+||+.+||+..||++++..|.
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8899999999999999999999884
No 134
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.04 E-value=10 Score=28.52 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|..||++++....
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999999988764
No 135
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.70 E-value=10 Score=30.75 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|..||++++....
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999987654
No 136
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=58.65 E-value=3.8 Score=33.80 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCCCCCCC-Cc--eeec--CCCceecCcccceecc
Q 008401 3 WCSSCARH-VT--GHRP--YDSQLCCDRCGKVLED 32 (567)
Q Consensus 3 ~Cp~Cgs~-~i--v~D~--~~G~~VC~~CG~Vlee 32 (567)
.||.|+.. .+ ..|. ..|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 59999998 33 4443 3689999999987654
No 137
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=58.05 E-value=10 Score=31.61 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=26.5
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.|...|..+||..+||+.+||++.++.+.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56679999999999999999999999885
No 138
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=57.83 E-value=16 Score=30.18 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHH
Q 008401 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (567)
Q Consensus 118 vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~ 197 (567)
+..++-||--...+.++++.++|+.++++...|.+.|++. +| ..|..||.+. -...
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~~ 60 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ---LG----------ISVLSWREDQ-----------RISQ 60 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HHHH
Confidence 4445556654444478999999999999999998877744 33 4456665533 0111
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHH
Q 008401 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMA 273 (567)
Q Consensus 198 A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~ 273 (567)
|.+ +|. .-..++.+||..+|-+ .....+.++... .+||.+|++
T Consensus 61 A~~------------------------lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~ 104 (107)
T 2k9s_A 61 AKL------------------------LLS----TTRMPIATVGRNVGFDDQLYFSRVFKKCT-----GASPSEFRA 104 (107)
T ss_dssp HHH------------------------HHH----HCCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHH
T ss_pred HHH------------------------HHH----cCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHHh
Confidence 222 211 1246777888888774 447777777665 567777764
No 139
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.24 E-value=8 Score=31.14 Aligned_cols=27 Identities=0% Similarity=-0.027 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|..||++++....
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 679999999999999999999886553
No 140
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=57.18 E-value=9.1 Score=34.08 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
..-+-+.+|+|-...+.|.+..+||+.++++...|.+.+.+|.+.
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444557788887655679999999999999999999999988774
No 141
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=57.13 E-value=10 Score=29.18 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=23.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
...|.+|||...|+|..||++++...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999987654
No 142
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=56.78 E-value=8.1 Score=31.74 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|..||++++..+.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346899999999999999999987664
No 143
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=56.69 E-value=9.6 Score=30.93 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=25.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-..|+.+|++.+||+.+||++.++.|.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5578999999999999999999999885
No 144
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=56.38 E-value=12 Score=34.73 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=25.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|..++|+.++||..||+++++.+.+
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44589999999999999999999998864
No 145
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=56.18 E-value=18 Score=32.75 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
++.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999643
No 146
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=56.17 E-value=5 Score=30.18 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=3.9
Q ss_pred ecCcccc
Q 008401 22 CCDRCGK 28 (567)
Q Consensus 22 VC~~CG~ 28 (567)
+|..||.
T Consensus 38 ~CP~Cg~ 44 (54)
T 4rxn_A 38 VCPLCGV 44 (54)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 5555554
No 147
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.69 E-value=5.8 Score=32.35 Aligned_cols=27 Identities=19% Similarity=0.616 Sum_probs=18.4
Q ss_pred CCCCCCCCCceeecCCCceecCccccee
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
+||.|+... +.+.....+.|..||...
T Consensus 27 wCP~C~~~~-~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSFGF-IYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCCCE-ECCCSCSCEECTTTCCEE
T ss_pred ECcCCCchh-eecCCCCceEeCCCCCcc
Confidence 699888753 334445567888888764
No 148
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=55.54 E-value=14 Score=31.80 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
....+.+|++-+..+.|.+..+||+.++++...+.+.+..|.+.
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34445556665445778999999999999999999988888773
No 149
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=55.48 E-value=12 Score=30.08 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=26.5
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+-..|+.+|++.++++.+||++.++.+.+
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345789999999999999999999998853
No 150
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=55.42 E-value=7.8 Score=31.98 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=25.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.-.+++.|+|+.++||+.|||+=+.++.
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3568999999999999999999998885
No 151
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=55.39 E-value=4.6 Score=30.12 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=4.5
Q ss_pred ecCcccceec
Q 008401 22 CCDRCGKVLE 31 (567)
Q Consensus 22 VC~~CG~Vle 31 (567)
+|+.||.|.+
T Consensus 5 ~C~~CGyvYd 14 (52)
T 1e8j_A 5 VCTVCGYEYD 14 (52)
T ss_dssp ECSSSCCCCC
T ss_pred EeCCCCeEEc
Confidence 4444444443
No 152
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=55.38 E-value=6 Score=36.83 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=21.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccce
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (567)
.||.|++.. .+..+|.+.|..||..
T Consensus 44 ACp~CnKKV--~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSV--LKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCE--EEETTTEEEETTTTEE
T ss_pred hchhhCCEe--eeCCCCeEECCCCCCC
Confidence 499999874 3557899999999998
No 153
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=55.16 E-value=23 Score=33.37 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
..+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 357899999999999999999999999744
No 154
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=55.09 E-value=5 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCCCCCCC--------------CceeecCC-CceecCcccceecc
Q 008401 2 VWCSSCARH--------------VTGHRPYD-SQLCCDRCGKVLED 32 (567)
Q Consensus 2 ~~Cp~Cgs~--------------~iv~D~~~-G~~VC~~CG~Vlee 32 (567)
|.||.||+. ...+-... -..+|..||-++-+
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
No 155
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.03 E-value=9.1 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...+||+.||+.++..+.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446899999999999999999998875
No 156
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=54.87 E-value=21 Score=29.81 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
|.-+.-||-... ...+++.+||..+|+|..++.+.+++.. .+|+.+|....
T Consensus 9 i~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 59 (113)
T 3oio_A 9 LTEAVSLMEANI-EEPLSTDDIAYYVGVSRRQLERLFKQYL-----GTVPSKYYLEL 59 (113)
T ss_dssp HHHHHHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred HHHHHHHHHhhh-cCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 344444554433 3459999999999999999999999885 57888887654
No 157
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=54.61 E-value=12 Score=30.44 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..|+.+|++.+|++.+||+++++.+.+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999864
No 158
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=54.36 E-value=8.2 Score=31.24 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|..||++++..+.
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999999987765
No 159
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=54.27 E-value=20 Score=32.77 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
++.|+.+||..+|+|..|+.+-+++|.+-.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 197 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEG 197 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999999997543
No 160
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=53.58 E-value=8 Score=30.05 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred CCCHhhHHHHhccCHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
..|++|||+.+|||..||.+-+.
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999998664
No 161
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=53.41 E-value=15 Score=33.17 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+-++ +|+..|+++||+.+|||..||-..+.
T Consensus 18 Il~aA~~lf~~-~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 18 VLEVAYDTFAA-EGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHHH-TCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 44455444443 57889999999999999999987764
No 162
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=53.29 E-value=14 Score=31.72 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 224 LYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 224 lylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
||.+-.-++-. .|+.+|++.++++.+||.++++.|.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~ 67 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH 67 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44433345555 8999999999999999999999885
No 163
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=53.03 E-value=12 Score=35.47 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
....||.+||...|||..||.+.++.-
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 355999999999999999999988764
No 164
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=52.87 E-value=25 Score=30.17 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+-..|+++||+.++|+.+||++.++.+.+.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999998643
No 165
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=52.63 E-value=12 Score=33.37 Aligned_cols=46 Identities=15% Similarity=-0.045 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 114 ~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+...-+-+.+|+|-+ .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556677788763 4568999999999999999999999998873
No 166
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=52.45 E-value=13 Score=32.01 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCCHhhHHHHh--ccCHHHHHHHHHHHHcc
Q 008401 234 KFSKSDIVKIV--HICEATLMKRLIEFENT 261 (567)
Q Consensus 234 ~~t~~eIa~vv--~Vse~TIrkR~kE~~~t 261 (567)
+.|..+||..+ ++|..+|++|++.+.+.
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 89999999999 99999999999998643
No 167
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=52.39 E-value=5.6 Score=31.79 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.1
Q ss_pred CCCCCCCCCCc
Q 008401 2 VWCSSCARHVT 12 (567)
Q Consensus 2 ~~Cp~Cgs~~i 12 (567)
|.||.||+..+
T Consensus 3 m~Cp~Cg~~~l 13 (78)
T 3ga8_A 3 MKCPVCHQGEM 13 (78)
T ss_dssp CBCTTTSSSBE
T ss_pred eECCCCCCCee
Confidence 57999987643
No 168
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=52.34 E-value=14 Score=34.30 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=28.5
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 229 ~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
..+|+..|++|||+.+|++..|++++++.+.+
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34688899999999999999999999998853
No 169
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=52.29 E-value=23 Score=32.53 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999643
No 170
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=52.04 E-value=33 Score=28.83 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhH-HHHHHHHHHHHHh-CCCccHHHHHhhhcc-ChHHHHHHH
Q 008401 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ-VQASCLYLACRQK-SKPFLLIDFSNYLNI-NVYELGAVY 154 (567)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~-vaAACLYiACR~e-~~p~tL~Diad~~~v-~v~~Lgr~~ 154 (567)
|..+|..+|++ .... .++|+. . |.++.. +.-.-+-.|++.- ....++.+||..+|. +...+.+.|
T Consensus 26 ~~~lA~~~~~S--~~~l---~r~fk~------~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~F 93 (120)
T 3mkl_A 26 LARIASELLMS--PSLL---KKKLRE------E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVF 93 (120)
T ss_dssp HHHHHHHTTCC--HHHH---HHHHHH------T-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHCcC--HHHH---HHHHHH------c-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHH
Confidence 67899999999 5432 233443 2 555433 3334445555543 467899999999996 677888887
Q ss_pred HHHHHHhhccccccccccCCchhhHHHHHhhhC
Q 008401 155 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187 (567)
Q Consensus 155 ~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~ 187 (567)
++. .| +.|..|-.++...+.
T Consensus 94 k~~---~G----------~tP~~yr~~~~~~~~ 113 (120)
T 3mkl_A 94 RNY---YG----------MTPTEYQERSAQRLS 113 (120)
T ss_dssp HHH---HS----------SCHHHHHHHC-----
T ss_pred HHH---HC----------cCHHHHHHHHHhccC
Confidence 755 32 568888887766664
No 171
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=51.94 E-value=18 Score=30.61 Aligned_cols=34 Identities=0% Similarity=-0.102 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 226 lAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+|..++-...||.+||...|||..||.+-++.-.
T Consensus 26 ~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar 59 (101)
T 2w7n_A 26 IARGVLVDGKPQATFATSLGLTRGAVSQAVHRVW 59 (101)
T ss_dssp HHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333456789999999999999999999988776
No 172
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=51.62 E-value=27 Score=32.25 Aligned_cols=29 Identities=10% Similarity=0.346 Sum_probs=26.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999643
No 173
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=51.15 E-value=5.7 Score=28.88 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=18.4
Q ss_pred CCCCCCCCCc-eee-cCCCceecCcccce
Q 008401 3 WCSSCARHVT-GHR-PYDSQLCCDRCGKV 29 (567)
Q Consensus 3 ~Cp~Cgs~~i-v~D-~~~G~~VC~~CG~V 29 (567)
.|.+|+.+.. .+. ..+|..+|..||+-
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 34 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLY 34 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHH
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHH
Confidence 5888888732 333 23677888888874
No 174
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=51.14 E-value=21 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=27.8
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 131 ~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
|.|.++.|||+.++++..++.+-...|.+.=-|
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 789999999999999999988877777765433
No 175
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=51.03 E-value=7.9 Score=38.38 Aligned_cols=32 Identities=13% Similarity=0.419 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCceeecCCCceecCcccceeccc
Q 008401 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~ 33 (567)
+..||.||+..... ...-..+|..||.+.-.+
T Consensus 107 ~~fC~~CG~~~~~~-~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS-KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TSBCTTTCCBEEEC-SSSSCEEESSSSCEECCC
T ss_pred CCccccCCCcCccC-CCceeeeCCCCCCEecCC
Confidence 35799999875433 334577999999987644
No 176
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=51.03 E-value=13 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-+.+..+|++.+|++.+||+++++.+.+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999853
No 177
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.02 E-value=11 Score=32.80 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceee---------cCCCceecCcccceecccc
Q 008401 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKVLEDHN 34 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D---------~~~G~~VC~~CG~Vlee~~ 34 (567)
..||.||....++= +.+-.++|.+||..-.++.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 36999999855432 2234689999998754443
No 178
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=50.74 E-value=8.5 Score=35.36 Aligned_cols=30 Identities=27% Similarity=0.652 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCceeecC--C-CceecCccccee
Q 008401 1 MVWCSSCARHVTGHRPY--D-SQLCCDRCGKVL 30 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~~--~-G~~VC~~CG~Vl 30 (567)
+..||.||....+..+. . -..+|..||.+.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 45799999986544321 2 256999999543
No 179
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=49.68 E-value=40 Score=28.35 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+|+.+|+..++++.+||.+.++.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999885
No 180
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=49.62 E-value=25 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 128 R~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+.++.|.++.|||..++++...+.+....|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346778999999999999999999888877664
No 181
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=49.40 E-value=27 Score=29.48 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
.-|.-+.-||-.... .++++.+||..+|+|+.++.+.+++. .+|+.+|....
T Consensus 7 ~~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~------G~s~~~~~~~~ 58 (120)
T 3mkl_A 7 NMRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLREE------ETSYSQLLTEC 58 (120)
T ss_dssp CHHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHHT------TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 334445555554443 47999999999999999999988752 47889987654
No 182
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=49.25 E-value=1.6e+02 Score=26.94 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.6
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
....|.+|||...|||..||++++...
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra 227 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKA 227 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 457899999999999999999988654
No 183
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=49.24 E-value=7.2 Score=36.23 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeec--CC--CceecCcccce
Q 008401 2 VWCSSCARHVTGHRP--YD--SQLCCDRCGKV 29 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~--~~--G~~VC~~CG~V 29 (567)
+.|+.|++.++.+-- .+ =.+.|..||..
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 479999998653332 33 37889999986
No 184
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=49.16 E-value=9 Score=32.20 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
|..+ |..++|+.++||..|||+.|+.|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999998853
No 185
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=48.94 E-value=32 Score=31.84 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=27.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
.++.|+.+||..+|+|..|+.+-+++|.+..
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 206 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAAG 206 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4678899999999999999999999997554
No 186
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=48.73 E-value=39 Score=27.91 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=39.4
Q ss_pred cCCCchhHHHH--HHHHHHHHHhCCCccHHHHHhhh-ccChHHHHHHHHHHHHHhhc
Q 008401 110 TKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 110 ~rGR~~~~vaA--ACLYiACR~e~~p~tL~Diad~~-~v~v~~Lgr~~~~L~~~L~i 163 (567)
.++|+...+.| .+.|++-.. +..+|.+|+..| |.+..++..+++++.+.+.-
T Consensus 23 s~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 23 SKRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 34555555555 566775443 568899999999 79999999999999987753
No 187
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=48.54 E-value=33 Score=29.29 Aligned_cols=53 Identities=4% Similarity=0.026 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
.-|.-+.-||-... ...+++.+||..+|+|..++.+.+++.. .+|+.+|....
T Consensus 11 ~~i~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~l~~~ 63 (129)
T 1bl0_A 11 ITIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKET-----GHSLGQYIRSR 63 (129)
T ss_dssp HHHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 33444444555443 3459999999999999999999999875 57888887654
No 188
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=48.44 E-value=25 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=26.9
Q ss_pred hcCCCCCHhhHHHHhccCHHH-HHHHHHHHHc
Q 008401 230 THGLKFSKSDIVKIVHICEAT-LMKRLIEFEN 260 (567)
Q Consensus 230 ~~g~~~t~~eIa~vv~Vse~T-IrkR~kE~~~ 260 (567)
.++...|+.+||+.++++.+| +.+.++.+.+
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 345579999999999999999 9999998853
No 189
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=48.29 E-value=4.8 Score=30.96 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=15.7
Q ss_pred CCCCCCCCCCceeecCCCceecCccccee
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
+.||.||... .--.||..||+-=
T Consensus 31 ~~c~~cGe~~------~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 31 VPCPECKAMK------PPHTVCPECGYYA 53 (60)
T ss_dssp EECTTTCCEE------CTTSCCTTTCEET
T ss_pred eECCCCCCee------cceEEcCCCCcCC
Confidence 4699998742 2334899999653
No 190
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=48.21 E-value=15 Score=29.66 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=25.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-..|+.+|++.++++.+||.+.++.|.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~ 59 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLL 59 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468999999999999999999999885
No 191
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=48.14 E-value=9.4 Score=31.80 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
+|++|||..+|||..||++-+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998764
No 192
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.72 E-value=37 Score=28.16 Aligned_cols=71 Identities=6% Similarity=0.033 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhcc-ChHHHHHHHHH
Q 008401 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (567)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v-~v~~Lgr~~~~ 156 (567)
|..+|..+|++ .. +-.++|+......+..-.....+..|+-++ .....++.|||..+|. +...+.+.|++
T Consensus 26 ~~~lA~~~~~S--~~---~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL----~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~ 96 (113)
T 3oio_A 26 TDDIAYYVGVS--RR---QLERLFKQYLGTVPSKYYLELRLNRARQLL----QQTSKSIVQIGLACGFSSGPHFSSTYRN 96 (113)
T ss_dssp HHHHHHHHTSC--HH---HHHHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--HH---HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 56788888888 43 334456665443332211112233333333 2346799999999996 67777777776
Q ss_pred H
Q 008401 157 L 157 (567)
Q Consensus 157 L 157 (567)
.
T Consensus 97 ~ 97 (113)
T 3oio_A 97 H 97 (113)
T ss_dssp H
T ss_pred H
Confidence 5
No 193
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=47.42 E-value=21 Score=32.37 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
++.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999754
No 194
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.35 E-value=63 Score=27.41 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|+.+|+..++++.+||.+.++.+..
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 45799999999999999999999998853
No 195
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=47.29 E-value=22 Score=32.35 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 222 AalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+.+|||..-.+-.+|.++||...+|+...+++-+..|..
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ 70 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRN 70 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445666643345689999999999999999999998863
No 196
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=47.24 E-value=9.2 Score=37.33 Aligned_cols=29 Identities=14% Similarity=0.587 Sum_probs=19.6
Q ss_pred CCCCCCCCCCce-e--ecCCCceecCccccee
Q 008401 2 VWCSSCARHVTG-H--RPYDSQLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~iv-~--D~~~G~~VC~~CG~Vl 30 (567)
++||+||+..+. + +.--.+..|.+|+--.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 479999997542 2 1224788999998643
No 197
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=47.17 E-value=21 Score=32.25 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999743
No 198
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=47.10 E-value=12 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.8
Q ss_pred cCCCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 231 HGLKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 231 ~g~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.|.++ |.+++|...|||..|||+.|+.|.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~ 63 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELE 63 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36677 799999999999999999999884
No 199
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=47.04 E-value=19 Score=29.17 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=25.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..+..+|++.++|+.+||++.++.|.+
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999999999864
No 200
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=46.56 E-value=46 Score=31.17 Aligned_cols=30 Identities=3% Similarity=-0.100 Sum_probs=27.1
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L 161 (567)
.|.+..+||+.+|++...|.|..++|.+.=
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 221 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKK 221 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998753
No 201
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=46.35 E-value=66 Score=30.09 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHHHHhC----------CCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008401 113 RRTEQVQASCLYLACRQKS----------KPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (567)
Q Consensus 113 R~~~~vaAACLYiACR~e~----------~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L 161 (567)
.+...-+|..|+.-++..+ .|.+..+||+.+|++..++.|..++|.+.=
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g 205 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKREN 205 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 3444444444444444433 588999999999999999999999998853
No 202
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=46.10 E-value=2.9e+02 Score=29.12 Aligned_cols=25 Identities=0% Similarity=-0.035 Sum_probs=22.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
...|+++||...|||..|||+++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~R 418 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6799999999999999999987643
No 203
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=46.02 E-value=23 Score=30.34 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=28.7
Q ss_pred HHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 225 ylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
||+..-.+...|.++||..++|+..|+++-+..+..
T Consensus 17 ~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 17 ELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 343332356789999999999999999999998863
No 204
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=45.88 E-value=32 Score=31.60 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999743
No 205
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=45.62 E-value=7.1 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=19.1
Q ss_pred CCCCCCCCC-ceee-cCCCceecCcccce
Q 008401 3 WCSSCARHV-TGHR-PYDSQLCCDRCGKV 29 (567)
Q Consensus 3 ~Cp~Cgs~~-iv~D-~~~G~~VC~~CG~V 29 (567)
.|.+|+.+. ..+. ..+|..+|..||.-
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 588998873 3443 23688899999974
No 206
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=45.56 E-value=25 Score=32.46 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56899999999999999999999999644
No 207
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=45.51 E-value=23 Score=32.10 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
++.|+.+||..+|+|..|+.+-+++|.+..
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 174 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREG 174 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 568999999999999999999999997443
No 208
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=45.15 E-value=27 Score=32.53 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
++.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 56899999999999999999999999744
No 209
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=45.00 E-value=26 Score=29.10 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.9
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv-~Vse~TIrkR~kE~~~ 260 (567)
.-+.++.+|++.+ +++.+||.++++.+.+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3568999999999 9999999999998853
No 210
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=44.81 E-value=21 Score=33.42 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
-++|+.+||+.+|+|.+||+++++.+.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998643
No 211
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=44.55 E-value=6.9 Score=30.66 Aligned_cols=29 Identities=31% Similarity=0.633 Sum_probs=18.1
Q ss_pred CCCCCCCCCc-eee-cCCCceecCcccceec
Q 008401 3 WCSSCARHVT-GHR-PYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~i-v~D-~~~G~~VC~~CG~Vle 31 (567)
.|.+||.+.. .+. ..+|..+|..||+..-
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 5788877632 222 2257788888887654
No 212
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.47 E-value=40 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.8
Q ss_pred HHHHHHHHhCC-CccHHHHHhhh-ccChHHHHHHHHHHHHHhh
Q 008401 122 CLYLACRQKSK-PFLLIDFSNYL-NINVYELGAVYLQLCQVLY 162 (567)
Q Consensus 122 CLYiACR~e~~-p~tL~Diad~~-~v~v~~Lgr~~~~L~~~L~ 162 (567)
-|..+|++.|. |.++.-||..| +-+...+...|.+|.+.+.
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 46678998876 89999999999 4899999999999999875
No 213
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.30 E-value=22 Score=30.77 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...|||..||++++....
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567999999999999999999987653
No 214
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=44.01 E-value=7.9 Score=31.57 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.0
Q ss_pred CceecCcccceeccc
Q 008401 19 SQLCCDRCGKVLEDH 33 (567)
Q Consensus 19 G~~VC~~CG~Vlee~ 33 (567)
..++|+.||.|.++.
T Consensus 26 ~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEA 40 (81)
T ss_dssp CEEEETTTCCEEETT
T ss_pred ceEEeCCCCEEEcCC
Confidence 468999999998763
No 215
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=43.91 E-value=6.9 Score=31.12 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.5
Q ss_pred eecCcccce
Q 008401 21 LCCDRCGKV 29 (567)
Q Consensus 21 ~VC~~CG~V 29 (567)
++|..||+-
T Consensus 31 ~LCNACGl~ 39 (71)
T 2kae_A 31 IQCNACFIY 39 (71)
T ss_dssp CCSSHHHHH
T ss_pred ccchHHHHH
Confidence 455555543
No 216
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.65 E-value=17 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=23.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
..|.+|||...+||+.||+.++..+.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46889999999999999999987764
No 217
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=43.62 E-value=28 Score=33.19 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
++.|+.+||..+|+|..||.+-+++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999754
No 218
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=43.42 E-value=26 Score=29.42 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCHhhHHHHh-ccCHHHHHHHHHHHHc
Q 008401 235 FSKSDIVKIV-HICEATLMKRLIEFEN 260 (567)
Q Consensus 235 ~t~~eIa~vv-~Vse~TIrkR~kE~~~ 260 (567)
.|+.||++.+ +|+..||.++++.+.+
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLID 69 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3499999999 9999999999999864
No 219
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=43.41 E-value=29 Score=30.70 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 213 GRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 213 GR~P~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
+..|.-|.-||+=+-++ +|+. .|+++||+.+|||..||-..+.
T Consensus 6 ~~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp --CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 44556677777766654 6774 8999999999999999987764
No 220
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=43.39 E-value=24 Score=32.33 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
..+.|+.+||..+|+|..|+.+-+++|.+
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999964
No 221
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=43.25 E-value=6.9 Score=32.40 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
..+ |..++|+.++||..||++.|+.|.
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445 899999999999999999999774
No 222
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=43.20 E-value=29 Score=29.66 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+|+.+||..++++.+||++.++.+.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999885
No 223
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=43.15 E-value=17 Score=30.39 Aligned_cols=25 Identities=4% Similarity=0.120 Sum_probs=22.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
...|.+|||...|||..||++++..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5689999999999999999988643
No 224
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.71 E-value=15 Score=31.03 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.9
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.++ |.+++|...|||..|||+.|+.|.
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556 899999999999999999999885
No 225
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=42.64 E-value=22 Score=30.40 Aligned_cols=30 Identities=17% Similarity=-0.017 Sum_probs=25.2
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.....|+++|++.+|+|..||.+--+.+..
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 334499999999999999999988887764
No 226
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=42.64 E-value=1.6e+02 Score=29.54 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=70.1
Q ss_pred CCchhhHHHHHhhhCCCCCHHHHHHHHHHHHHhhhc---cccCCCChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCH
Q 008401 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD---WITTGRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICE 248 (567)
Q Consensus 173 vdP~~~I~Rf~~~L~~~~~~~V~~~A~~iv~~~~~~---~i~~GR~P~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse 248 (567)
+.-..||.|+...-.. +..+.-.|+-.++++... ...+.....=+--+||.+|+..++.. .+-+..|++.||+.
T Consensus 75 ISI~~Yl~RI~k~t~l--s~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl 152 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSL--EHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRC 152 (293)
T ss_dssp SCHHHHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCH
T ss_pred CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCH
Confidence 3445677776665554 788888888888887652 33355677889999999999888554 68899999999998
Q ss_pred HHHHHHHHHHHccCCCCC--CHHHHHH
Q 008401 249 ATLMKRLIEFENTDSGSL--TIEDFMA 273 (567)
Q Consensus 249 ~TIrkR~kE~~~t~s~~L--t~~ef~~ 273 (567)
..|..==.+|..-=.=+| +.++|..
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~~ee~~~ 179 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPRDHNITL 179 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCceeeCHHHHHH
Confidence 888777677765544444 3445544
No 227
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.60 E-value=19 Score=31.87 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 222 AalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+.+|||..-.+..+|.++||...+|+..+|++-+..|..
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~ 54 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRN 54 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345566543334689999999999999999999998863
No 228
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=42.43 E-value=8.3 Score=39.92 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=14.6
Q ss_pred eecCcccceecccccccccccc
Q 008401 21 LCCDRCGKVLEDHNFSTEATFV 42 (567)
Q Consensus 21 ~VC~~CG~Vlee~~id~~~ef~ 42 (567)
..|.+||.|.-....+.+..|.
T Consensus 54 ~~C~~Cg~v~~~~~~~~~~~y~ 75 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVPRDLMFH 75 (416)
T ss_dssp EEETTTCCEEESSCCCHHHHSS
T ss_pred EECCCCCceeecCcCCHHHhcc
Confidence 4699999998765554443443
No 229
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=42.33 E-value=20 Score=31.79 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 222 AalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+.+|||.. .+-.+|.++||...+|+..+|++-+..+..
T Consensus 19 ~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 19 ILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455542 355689999999999999999999998863
No 230
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=42.21 E-value=28 Score=29.88 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=33.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
....|+.+||..+|+|..++.+.++... .+|+.+|....
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~-----G~tp~~y~~~~ 129 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT-----GMTPKAWQQAW 129 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 5678999999999999999999998775 57888887653
No 231
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=42.18 E-value=25 Score=29.32 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..++.+|++.++++.+||.+.++.+.+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999998853
No 232
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=41.67 E-value=19 Score=35.38 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..|++-+.+. .|+. .|+++||+.+||+..||-..+.
T Consensus 125 il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~ 162 (311)
T 4ich_A 125 ILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFP 162 (311)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 44455444443 4765 8999999999999999977664
No 233
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.62 E-value=21 Score=30.51 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|||..||++++....
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887664
No 234
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=41.61 E-value=20 Score=30.88 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.9
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.++ |.+++|...|||..|||+.|..|.
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566 599999999999999999999885
No 235
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.60 E-value=14 Score=37.46 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=4.9
Q ss_pred eecCccccee
Q 008401 21 LCCDRCGKVL 30 (567)
Q Consensus 21 ~VC~~CG~Vl 30 (567)
.+|..||.-+
T Consensus 254 e~C~~C~~Yl 263 (309)
T 2fiy_A 254 ETCPSCQGYL 263 (309)
T ss_dssp EEETTTTEEE
T ss_pred EEcccccchH
Confidence 4555555443
No 236
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=41.55 E-value=16 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=25.0
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.++ |.+++|...|||..|||+.|+.|.
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELE 60 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4456 899999999999999999999885
No 237
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.54 E-value=27 Score=29.64 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...|+|+.||++++....
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568999999999999999998887654
No 238
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=41.33 E-value=17 Score=31.68 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+ ..|+++||+.+||+.+||=..++
T Consensus 17 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 17 IYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 44555554443 577 58999999999999999865553
No 239
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=40.90 E-value=15 Score=29.40 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..|+.+|++.++++.+||.++++.+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999998853
No 240
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=40.68 E-value=24 Score=29.17 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-..++.+|+..+|++.+||.+.++.+.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~ 64 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLK 64 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999999886
No 241
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=40.56 E-value=23 Score=30.88 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.++ |.+++|...|||..|||+.|+.|.
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~ 53 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLV 53 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566 899999999999999999999885
No 242
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=40.55 E-value=24 Score=31.44 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|.-||+=+-++ +|+..|+++||+.+|||..||-..+.
T Consensus 19 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 19 KILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 455555544443 57779999999999999999987764
No 243
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=40.44 E-value=16 Score=32.35 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=24.3
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-...|.+|||...|+++.||++|+..-.
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3468999999999999999999997653
No 244
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=40.31 E-value=21 Score=30.75 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=30.4
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHH
Q 008401 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181 (567)
Q Consensus 131 ~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~R 181 (567)
..++++.+||..+|++...|.+.|++. +| ..|..|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~---~G----------~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT---TG----------MTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHH
Confidence 568999999999999999999988855 33 456777754
No 245
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=40.19 E-value=7.4 Score=30.20 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=17.8
Q ss_pred CCCCCCCCC-ceee-cCCCceecCcccceec
Q 008401 3 WCSSCARHV-TGHR-PYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~-iv~D-~~~G~~VC~~CG~Vle 31 (567)
.|-+||.+. ..+. ..+|..+|..||+-..
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 577777763 2333 2356777888877654
No 246
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=40.13 E-value=9.9 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceec
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
+.||.||... ---.||..||.-=+
T Consensus 31 ~~c~~cG~~~------~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHGKK------LSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCCEE------CTTBCCTTTCBSSS
T ss_pred eECCCCCCEe------CCceEcCCCCcCCC
Confidence 4689998752 23458999997543
No 247
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.85 E-value=12 Score=37.92 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=19.4
Q ss_pred CCCCCCCCCCc--eeec---CCC--ceecCccccee
Q 008401 2 VWCSSCARHVT--GHRP---YDS--QLCCDRCGKVL 30 (567)
Q Consensus 2 ~~Cp~Cgs~~i--v~D~---~~G--~~VC~~CG~Vl 30 (567)
..||.||+.-. ++.. .+| .++|.-||+-=
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 47999999832 2221 356 68999998854
No 248
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=39.83 E-value=15 Score=36.89 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=23.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
.-+.|++|||+.+|||.+|+++-|..
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 34679999999999999999999974
No 249
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.54 E-value=35 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
..+|+.+|++.++++.+||.+.++.+..
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 3799999999999999999999998853
No 250
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=39.35 E-value=18 Score=29.74 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..+..+|++.+|++.+|+.++++.+.+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999864
No 251
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=39.31 E-value=28 Score=29.52 Aligned_cols=27 Identities=4% Similarity=0.065 Sum_probs=24.7
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
..++.+|++.+|++.+||.++++.+.+
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999999999864
No 252
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=39.26 E-value=9.3 Score=33.11 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCceeec-CCCceecCcccceeccccc
Q 008401 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLEDHNF 35 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~-~~G~~VC~~CG~Vlee~~i 35 (567)
|..||+||..+-+... ......|..||.-+.+..+
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~v 40 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGEV 40 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTTCCCC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCccccCCc
Confidence 3579999998644433 3456789999997765443
No 253
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=39.23 E-value=24 Score=32.06 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
..-+-+.+|+|-. .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 12 ~yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3344567788764 3678999999999999999999999998875
No 254
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=39.00 E-value=33 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
++.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45899999999999999999999999743
No 255
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=38.96 E-value=33 Score=29.53 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-.+|+.+||..++|+.+||++.++.+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 468999999999999999999999885
No 256
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=38.90 E-value=33 Score=32.12 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=27.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
+-.+|..|+|..++||+.|||+=+.||..+.
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999997554
No 257
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=38.56 E-value=12 Score=28.18 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=6.2
Q ss_pred eecCcccceecc
Q 008401 21 LCCDRCGKVLED 32 (567)
Q Consensus 21 ~VC~~CG~Vlee 32 (567)
.+|+.||.|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 455555555543
No 258
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=38.52 E-value=26 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=20.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~ 255 (567)
....|+.++|+.+||+.+||.+-.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456899999999999999999653
No 259
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.48 E-value=32 Score=25.03 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
..+..|||..++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35779999999999999999999999988764
No 260
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=38.44 E-value=12 Score=29.35 Aligned_cols=28 Identities=29% Similarity=0.651 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCceee---cCCCceecCcccc
Q 008401 1 MVWCSSCARHVTGHR---PYDSQLCCDRCGK 28 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D---~~~G~~VC~~CG~ 28 (567)
|.+|.-||.+.-.+. ...|.++|.+|=.
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHH
Confidence 457999998732111 1246789999844
No 261
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=38.43 E-value=12 Score=27.74 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=7.4
Q ss_pred eecCcccceecc
Q 008401 21 LCCDRCGKVLED 32 (567)
Q Consensus 21 ~VC~~CG~Vlee 32 (567)
++|+.||.|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 466666666654
No 262
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=38.43 E-value=67 Score=27.34 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+|+.+|+..++++.+||.+.++.+..
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998864
No 263
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=38.10 E-value=68 Score=29.05 Aligned_cols=47 Identities=11% Similarity=-0.058 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHHHhC---CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 114 RTEQVQASCLYLACRQKS---KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 114 ~~~~vaAACLYiACR~e~---~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+...-+|..|..-+...+ .|.+..+||+.+|++..++.|..++|.+.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 333444444444444433 48899999999999999999999999875
No 264
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=37.81 E-value=12 Score=29.59 Aligned_cols=7 Identities=29% Similarity=0.947 Sum_probs=3.7
Q ss_pred ecCcccc
Q 008401 22 CCDRCGK 28 (567)
Q Consensus 22 VC~~CG~ 28 (567)
+|..||.
T Consensus 42 ~CP~Cga 48 (70)
T 1dx8_A 42 MCPACRS 48 (70)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 4555554
No 265
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=37.71 E-value=72 Score=29.02 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=26.8
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++..++.+..++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 58899999999999999999999999775
No 266
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=37.69 E-value=55 Score=29.32 Aligned_cols=32 Identities=9% Similarity=-0.083 Sum_probs=27.7
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
.|.+..+||+.+|++..++.++.++|.+.=-|
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I 169 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREGLI 169 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSE
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 47899999999999999999999999875333
No 267
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=37.43 E-value=3.7e+02 Score=27.91 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=18.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
...|..+||...|||..|||+++..
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~r 403 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENK 403 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6799999999999999999987643
No 268
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=37.42 E-value=15 Score=34.03 Aligned_cols=27 Identities=19% Similarity=0.621 Sum_probs=21.7
Q ss_pred CCCC--CCCCCceeecCCCceecCcccceec
Q 008401 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~--Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
.||. |++.. .+..+|.+.|..||...+
T Consensus 45 aC~~~~CnKKv--~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKKV--IDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCBC--EEETTTEEEETTTTEEES
T ss_pred CCCchhcCCcc--ccCCCCeEECCCCCCcCC
Confidence 5999 99874 355679999999998765
No 269
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=37.30 E-value=35 Score=30.13 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..++.+|++.++|+.+|+.++++.+.+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999853
No 270
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.30 E-value=38 Score=28.90 Aligned_cols=101 Identities=6% Similarity=0.024 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHH
Q 008401 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 195 (567)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~ 195 (567)
..+..++-||--. ...++++.++|+.++++...|.+.|++. +| ..|..||.++ -.
T Consensus 11 ~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~l~~~-----------Rl 65 (129)
T 1bl0_A 11 ITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE---TG----------HSLGQYIRSR-----------KM 65 (129)
T ss_dssp HHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HH
Confidence 3444555555433 2456999999999999999999887754 33 3455665533 01
Q ss_pred HHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHh
Q 008401 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (567)
Q Consensus 196 ~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 274 (567)
..|.+ +|. .-..++.+||..+|-+ .....+.++... .+||.+|++.
T Consensus 66 ~~A~~------------------------lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 112 (129)
T 1bl0_A 66 TEIAQ------------------------KLK----ESNEPILYLAERYGFESQQTLTRTFKNYF-----DVPPHKYRMT 112 (129)
T ss_dssp HHHHH------------------------HHH----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHTC
T ss_pred HHHHH------------------------HHH----cCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 11222 221 1246889999999975 558888888776 6789999876
No 271
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=37.06 E-value=26 Score=32.27 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
.+.|+.+||..+|+|..|+.+-+++|.+-.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g 191 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEG 191 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 468999999999999999999999996443
No 272
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=37.03 E-value=12 Score=32.90 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=18.5
Q ss_pred CCCCCCCCCceeecCCCceecCcccceec
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
+|+.||.-..+.....|.++| ||.-++
T Consensus 9 kC~~CGnivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 9 KCEVCGNIVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTEECE
T ss_pred EcCCCCeEEEEEcCCCcceec--CCcccc
Confidence 599998654444556677888 887554
No 273
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=36.83 E-value=30 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+-+. +|+..|+++||+.+|||..||-..+.
T Consensus 13 ~Il~aA~~lf~~-~G~~~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 13 RLLEAAAALTYR-DGVGIGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHH-HCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHHcC
Confidence 344455544443 47668999999999999999977764
No 274
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=36.60 E-value=25 Score=29.75 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-+.++.+|+..+|++.+||.+.++.+.+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999998853
No 275
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=36.42 E-value=25 Score=30.70 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=23.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
...|+++|++.+|+|..||.+--+.+..
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKRSLQW 101 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3499999999999999999987777753
No 276
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.40 E-value=20 Score=26.82 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.0
Q ss_pred CCHhhHHHHhccCHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~ 255 (567)
.||.++|+.+|||..||.+-.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999998864
No 277
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.40 E-value=42 Score=30.28 Aligned_cols=40 Identities=10% Similarity=-0.125 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 216 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 216 P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-.-|..||+=+.+.-- ...|+++||+.+||+..||-.++.
T Consensus 22 r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 22 RDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 3446666666666655 779999999999999999987774
No 278
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=36.32 E-value=15 Score=28.03 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=18.9
Q ss_pred CCHhhHHHHhccCHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.|.+|+|..+|||..||.+-.+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 5789999999999999976544
No 279
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=36.29 E-value=23 Score=25.76 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=28.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...|+.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 51 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN-----KYNPSLQLALKIAY 51 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT-----SCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999875442 23456777766653
No 280
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=36.07 E-value=35 Score=32.16 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 225 ylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|..+.-.|+.-+|+++|+.+|||+..|.+.++-..
T Consensus 33 y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~ 67 (189)
T 3mky_B 33 YASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp HHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhc
Confidence 66666778999999999999999999999998663
No 281
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=36.03 E-value=32 Score=30.33 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 113 R~~~~vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
++...-+-+.+|+|-+ .+ + +..+||+.++++...|.+.+.+|.+.
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445566678888854 34 5 99999999999999999999988774
No 282
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=36.02 E-value=35 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-.+|+.+|++.++++.+||.+.++.+.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999885
No 283
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=35.98 E-value=89 Score=28.58 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=26.7
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++...|.|..++|.+.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999775
No 284
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.94 E-value=18 Score=35.73 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.1
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
+.|++|||+.+|||.+|+++-|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 479999999999999999999984
No 285
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=35.77 E-value=16 Score=34.83 Aligned_cols=28 Identities=14% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccceecc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
.|++||..... ......+|..||.|...
T Consensus 12 ~Cw~C~~~~~~--~~~~~~fC~~c~~~q~~ 39 (207)
T 3bvo_A 12 RCWNCGGPWGP--GREDRFFCPQCRALQAP 39 (207)
T ss_dssp BCSSSCCBCCS--SCSCCCBCTTTCCBCCC
T ss_pred CCCCCCCCccc--ccccccccccccccCCC
Confidence 69999975211 13567899999998753
No 286
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=35.74 E-value=37 Score=28.35 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..++.+|++.++++.+||.+.++.+.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999853
No 287
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=35.45 E-value=50 Score=30.75 Aligned_cols=31 Identities=6% Similarity=0.171 Sum_probs=27.0
Q ss_pred CC-CCCHhhHHHHhccCH-HHHHHHHHHHHccC
Q 008401 232 GL-KFSKSDIVKIVHICE-ATLMKRLIEFENTD 262 (567)
Q Consensus 232 g~-~~t~~eIa~vv~Vse-~TIrkR~kE~~~t~ 262 (567)
.+ +.|+.+||..+|+|. .|+.+-+++|.+..
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~g 198 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQEK 198 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHCC
Confidence 35 789999999999999 79999999997443
No 288
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=35.38 E-value=29 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=25.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-..++.+|+..+|++.+||.+.++.+.+
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999999863
No 289
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=35.36 E-value=1.1e+02 Score=26.39 Aligned_cols=27 Identities=11% Similarity=0.045 Sum_probs=22.4
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 134 FLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 134 ~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.+..+||..++++..+|.+.+++....
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 578999999999999998887776553
No 290
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=35.36 E-value=46 Score=28.25 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=24.7
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
..|.++||..+||+..||++-++.+...
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~ 49 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSY 49 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHccccc
Confidence 4689999999999999999999887654
No 291
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.88 E-value=69 Score=24.88 Aligned_cols=43 Identities=2% Similarity=0.105 Sum_probs=30.8
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 230 ~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
+.....||.++|+.+||+..||.+-.+- .....+++.+..+.+
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~g----~~~~~~~~~l~~la~ 69 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMRG----KIDLFSLESLIDMIT 69 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHTT----CGGGCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 3445789999999999999999875542 111366777777654
No 292
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.88 E-value=40 Score=26.29 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCCCHhhHHHHh-----ccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIV-----HICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv-----~Vse~TIrkR~kE~~~ 260 (567)
...|+.||+..+ +|+.+||.+-++.|.+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 578999999999 9999999999998853
No 293
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=34.82 E-value=25 Score=31.35 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|.-||+=+-+. +|+..|+++||+.+|||..||-..+.
T Consensus 21 Il~aA~~lf~~-~G~~~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 21 IIEAAAAEVAR-HGADASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp HHHHHHHHHHH-HGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCchHHHHHHCC
Confidence 44444444333 46688999999999999999977663
No 294
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=34.73 E-value=24 Score=28.24 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.4
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.|+.+||..+||+..||.+-++.+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7899999999999999998887664
No 295
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=34.70 E-value=46 Score=29.17 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=25.9
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv-~Vse~TIrkR~kE~~~ 260 (567)
.-..++.|+++.+ +|+..|+.++|+++.+
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~ 66 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEA 66 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4478999999999 9999999999999853
No 296
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=34.67 E-value=28 Score=28.70 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=24.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-..++.+|++.++++.+||++.++.+.
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~ 59 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQ 59 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999999885
No 297
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.44 E-value=41 Score=25.26 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=28.9
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
...+..|||+.++++...+.....+..+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999998888888753
No 298
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=34.10 E-value=35 Score=34.42 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+-.+|..++|+.++||+.||++.++.+.+
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 355689999999999999999999999875
No 299
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=34.08 E-value=27 Score=26.55 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.0
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
++.+||+..+|||..||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68999999999999999988875
No 300
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=34.00 E-value=49 Score=28.26 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..++.+|++.+|++.+||.+.++.+.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999964
No 301
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=33.98 E-value=39 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+-+. +|+. .|+++||+.+|||..||=..+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 13 IFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFK 50 (188)
T ss_dssp HHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSS
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcC
Confidence 55555555554 6875 8999999999999999987764
No 302
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=33.94 E-value=50 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
..|+.+||...||+..||.+-++.+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~ 50 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSN 50 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 5799999999999999999999888653
No 303
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.85 E-value=25 Score=26.58 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=30.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...|+.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 58 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN-----DVQPSLETLFDIAE 58 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 3579999999999999999975542 23577888877764
No 304
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=33.83 E-value=73 Score=25.52 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=33.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..|+..++..+.+-. ...+++.+..+++
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g~-~~p~~~~l~~la~ 55 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKGK-HAPDFEMANRLAK 55 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHTS-SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCCC-CCCCHHHHHHHHH
Confidence 357999999999999999777777775433 4678888887764
No 305
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=33.77 E-value=45 Score=29.22 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|.-||+=+.+. +|+. .|+++||+.+|||..||-..++
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 44455544444 6765 8999999999999999988774
No 306
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.75 E-value=44 Score=27.10 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=27.9
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 134 ~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
.+..+||+.+++++.++......+.+.|++.
T Consensus 45 ~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 45 FTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999998864
No 307
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.71 E-value=16 Score=31.47 Aligned_cols=8 Identities=25% Similarity=1.057 Sum_probs=4.1
Q ss_pred ecCcccce
Q 008401 22 CCDRCGKV 29 (567)
Q Consensus 22 VC~~CG~V 29 (567)
.|..||.-
T Consensus 92 ~CP~Cgs~ 99 (119)
T 2kdx_A 92 VCEKCHSK 99 (119)
T ss_dssp CCSSSSSC
T ss_pred cCccccCC
Confidence 45555543
No 308
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=33.70 E-value=1.5e+02 Score=25.00 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=24.4
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+|+.+|+..++++.+|+.+.++.+.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 59999999999999999999999885
No 309
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.66 E-value=25 Score=27.24 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=28.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g-----~~~~~~~~~~~ia~ 62 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG-----INALNAYNAALLAK 62 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4679999999999999999875542 23456666666653
No 310
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=33.65 E-value=33 Score=32.47 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...++|+.||+.+++.+.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568999999999999999999998774
No 311
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=33.53 E-value=12 Score=27.76 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCceee---cCCCceecCccc
Q 008401 1 MVWCSSCARHVTGHR---PYDSQLCCDRCG 27 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D---~~~G~~VC~~CG 27 (567)
|.+|.-||+..-.+. ...|.++|.+|=
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi 40 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDECV 40 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHHH
Confidence 357999998632111 124678888883
No 312
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.50 E-value=33 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.7
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 229 ~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
..++.+ +.+.|+.+||+..||.++++.+.
T Consensus 61 ~~~~gn--~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 61 RHTQGH--KQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHTTTC--TTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhCCC--HHHHHHHHCcCHHHHHHHHHHhC
Confidence 344444 45789999999999999998863
No 313
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.49 E-value=27 Score=25.69 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=20.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
...|+.++|..+||+..||.+-.+
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467999999999999999987654
No 314
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=33.47 E-value=18 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCCCCCCC--CceeecCCCceecCcccc
Q 008401 3 WCSSCARH--VTGHRPYDSQLCCDRCGK 28 (567)
Q Consensus 3 ~Cp~Cgs~--~iv~D~~~G~~VC~~CG~ 28 (567)
.||.|+.. .+.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 69999865 466677788999999994
No 315
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=33.35 E-value=26 Score=25.60 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
...|+.++|..+||+..||.+-.+- ....+++.+..++
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~ 54 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999865432 2234666666554
No 316
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=33.22 E-value=41 Score=29.94 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+=+.+. +|+ ..|+++||+.+|||..||-..+.
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 3455566555554 576 58999999999999999987764
No 317
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=33.13 E-value=85 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-..|+.+|++.++++.+|+.+.++.+.
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4579999999999999999999999885
No 318
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=32.97 E-value=1.4e+02 Score=24.94 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 122 CLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+|++..+..+.|.+..+|++.++++...+.+...+|.+.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 444444444458999999999999999999999888775
No 319
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=32.94 E-value=36 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
..|+++||..++|+..||++-++.+..+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4689999999999999999888877543
No 320
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.87 E-value=24 Score=34.94 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCHhhHHHHhccCHHHHHHHHH
Q 008401 235 FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 235 ~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.|++|||+.+|||.+|+++-|.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4889999999999999999998
No 321
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=32.69 E-value=69 Score=23.90 Aligned_cols=32 Identities=13% Similarity=-0.060 Sum_probs=28.2
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
..+..+||..++++..++......+.+.|+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 34889999999999999999999999988763
No 322
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.65 E-value=1.7e+02 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=27.2
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
|.++.+||+.++++...+.+....|.+.=-+
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv 82 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLI 82 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 8999999999999999999999888875333
No 323
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=32.52 E-value=39 Score=30.64 Aligned_cols=30 Identities=7% Similarity=0.220 Sum_probs=26.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
.+.|+.+||..+|+|..|+.+-+++|.+-.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 191 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEG 191 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 467999999999999999999999996543
No 324
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=32.25 E-value=29 Score=25.68 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=20.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
...|+.++|..+||+..||.+-.+
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 467999999999999999987654
No 325
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=32.05 E-value=10 Score=33.39 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=13.8
Q ss_pred eecCCCceecCccccee
Q 008401 14 HRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 14 ~D~~~G~~VC~~CG~Vl 30 (567)
++-.+|.++|.+||.+.
T Consensus 93 ~~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 93 IDVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEEETTTCCEE
T ss_pred eEEEEEEEECCCCCCEe
Confidence 34457999999999985
No 326
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=31.93 E-value=31 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCceeecCCCceecCcccceecc
Q 008401 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 1 M~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
|+.|+-=+.....-....|.++|..||.-|=.
T Consensus 1 ~~~c~~~~ge~y~~~~~~GiY~C~~Cg~pLF~ 32 (124)
T 2kao_A 1 MSFCSFFGGEVFQNHFEPGVYVCAKCSYELFS 32 (124)
T ss_dssp CCCCCCCCSCTTTTCCCCCEEEESSSCCCCCC
T ss_pred CccccccccccccCCCCCEEEEeCCCCCcccc
Confidence 66666544442222236899999999998743
No 327
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.87 E-value=51 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.1
Q ss_pred CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 236 SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 236 t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
++...|+.+||+..|+.++++.+.
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhC
Confidence 466789999999999999999874
No 328
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=31.81 E-value=1.1e+02 Score=26.04 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=26.5
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
++-.+|+.+|+..++++.+|+.+.++.+..
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 455689999999999999999999998853
No 329
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=31.79 E-value=45 Score=29.08 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..|++=+.+. +|+ .+|+++||+.+|||..||-+.+.
T Consensus 13 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 13 AILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp HHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 455566655554 676 58999999999999999987764
No 330
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.67 E-value=29 Score=26.17 Aligned_cols=39 Identities=3% Similarity=0.047 Sum_probs=28.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...|+.++|..+||+..||.+-.+ .....+++.+..+++
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~la~ 60 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER-----GDRNISLINIHKICA 60 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 468999999999999999987543 223466777766653
No 331
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.67 E-value=38 Score=30.40 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...|+|+.||++++....
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 568999999999999999999887553
No 332
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.57 E-value=21 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=13.5
Q ss_pred CCCCCCCCCceeecCCCceecCcccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~ 28 (567)
.|..||...- .+ ....+-|..||.
T Consensus 23 ~C~~Cg~~~~-l~-~~~~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCADCGARNT-IQ-AKEVIRCRECGH 46 (63)
T ss_dssp BCSSSCCBCC-CC-SSSCCCCSSSCC
T ss_pred ECCCCCCeee-cC-CCCceECCCCCc
Confidence 4777766532 22 234567777775
No 333
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.46 E-value=29 Score=26.22 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=30.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
....|+.++|..+||+..||.+-.+ -.....+++.+..+++
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~----g~~~~~~~~~l~~ia~ 58 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE----GRSKRPTITTIRKVCG 58 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC----TTCCCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc----CCCCCCCHHHHHHHHH
Confidence 3568999999999999999987543 1222567777777754
No 334
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.37 E-value=42 Score=26.81 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=29.8
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 230 ~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
.....+|+.++|+.+||+..||.+-.+ .....+++.+..+++
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~-----G~~~p~~~~l~~ia~ 59 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCK-----GIAIPRMGKVQALAD 59 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHT-----TSCCCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHh-----CCCCCCHHHHHHHHH
Confidence 344568999999999999999987443 223446666666643
No 335
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.22 E-value=60 Score=28.78 Aligned_cols=38 Identities=13% Similarity=-0.058 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+.
T Consensus 20 ~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 20 LLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcC
Confidence 355555555554 577 58999999999999999988875
No 336
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=31.15 E-value=48 Score=29.18 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..|++=+.++ .|+ ..|+++||+.+||+..||-..+.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (203)
T 3f1b_A 19 MLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhC
Confidence 55555554443 576 68999999999999999987764
No 337
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=31.14 E-value=48 Score=29.29 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+ ..|+++||+.+|||..||-..+.
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 44555554443 587 58999999999999999987764
No 338
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.11 E-value=52 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=26.3
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+-..|+.+|++.++++.+||.+.++.+.
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 45679999999999999999999999885
No 339
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=31.06 E-value=49 Score=28.04 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|+.+|+..++++.+||.+.++.+..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 55789999999999999999999998853
No 340
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=31.04 E-value=29 Score=26.52 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
...|+.++|+.+||+..||.+-.+ .....+++.+..++
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~-----g~~~p~~~~l~~ia 51 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQ-----SETAPVVVKYIAFL 51 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT-----CCSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc-----CCCCCCHHHHHHHH
Confidence 468999999999999999986432 12234555555554
No 341
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=31.03 E-value=21 Score=27.38 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=20.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~ 255 (567)
...||.++|..+||+..||++--
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 56899999999999999998743
No 342
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.97 E-value=21 Score=35.49 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
+.|++|||+.+|||.+|+++-|..
T Consensus 10 ~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 10 PLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 479999999999999999998864
No 343
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=30.76 E-value=51 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=24.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
..+|+.+|+..++++.+|+.+-++.+.
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le 55 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFE 55 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 448999999999999999999999885
No 344
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=30.71 E-value=1.1e+02 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.5
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
++-.+|+.+||..++++.+||.+.++.+..
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 356799999999999999999999998853
No 345
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=30.54 E-value=41 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHh-ccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIV-HICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv-~Vse~TIrkR~kE~~ 259 (567)
-..++.+|++.+ +++.+|+.++++.+.
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le 61 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREME 61 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 368999999999 999999999999885
No 346
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=30.52 E-value=3.5e+02 Score=25.57 Aligned_cols=139 Identities=12% Similarity=0.164 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHhccccCCCchh-HHHHHHHHHHHHHhC-CCccHHHH
Q 008401 64 GASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE-QVQASCLYLACRQKS-KPFLLIDF 139 (567)
Q Consensus 64 ~~srer~l~~a~~~I~~ia~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~-~vaAACLYiACR~e~-~p~tL~Di 139 (567)
.++.-.....++..|..++..++.... ......+..++-..+++.+..+|... .-+..|+...+.... ....+.+|
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l 144 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELV 144 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 455555667888899998888765411 23344555666666776665555332 222233333333332 23445555
Q ss_pred Hhhhc-cChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhh---CCCCCHHHHHHHHHHHHHhh
Q 008401 140 SNYLN-INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL---LPGGNKKVCDTARDILASMK 206 (567)
Q Consensus 140 ad~~~-v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L---~~~~~~~V~~~A~~iv~~~~ 206 (567)
...++ -+.+....+...|.+.|.--... .++|..++..++..| ..+.+..|...|..++-.+-
T Consensus 145 ~~~l~~Knpkv~~~~l~~l~~~l~~fg~~----~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 145 IPFFEKKLPKLIAAAANCVYELMAAFGLT----NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp GGGGGCSCHHHHHHHHHHHHHHHHHHTTT----TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHhCCC----cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 55553 35666666666666555421111 245555555544433 23567889999988887764
No 347
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=30.09 E-value=61 Score=29.05 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++...|.|..++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998874
No 348
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.90 E-value=33 Score=25.57 Aligned_cols=39 Identities=3% Similarity=-0.003 Sum_probs=29.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...|+.++|+.+||+..||.+-.+ .....+++.+..+++
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~l~~ 63 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVER-----GQRNVSLVNILKLAT 63 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 468999999999999999987433 224567777776653
No 349
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.90 E-value=1.3e+02 Score=25.34 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=25.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-.+|+.+|++.++++.+||.+.++.+.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 379999999999999999999999885
No 350
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=29.88 E-value=48 Score=29.54 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+-+.+. .|+ .+|+++||+.+||+..||=..++
T Consensus 16 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 54 (189)
T 3vp5_A 16 RVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFE 54 (189)
T ss_dssp HHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCC
Confidence 455566665554 677 68999999999999999987664
No 351
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=29.87 E-value=41 Score=29.37 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+-+.+. +|+ ..|+++||+.+|||..||-..+.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (196)
T 3col_A 13 VKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFK 52 (196)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhC
Confidence 3456666665554 577 58999999999999999977664
No 352
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=29.72 E-value=51 Score=26.45 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.3
Q ss_pred CCCCCHhhH----HHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDI----VKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eI----a~vv~Vse~TIrkR~kE~~~ 260 (567)
+-..++.+| +...+++.+||.+.++.+.+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456899999 88899999999999998853
No 353
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.72 E-value=78 Score=24.05 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=28.0
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
..+..+||+.++++..++......+.+.|+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999888753
No 354
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=29.71 E-value=34 Score=32.46 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=24.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...+||+.||+.+++.+.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567999999999999999999998774
No 355
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.69 E-value=31 Score=27.99 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHHh
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 277 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~ 277 (567)
...||.++|+.+||+..||.+-.+- . .++++.+.++++-
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G----~--~~s~~~l~kIa~~ 74 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN----E--NVSLTVLLAICEY 74 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----C--CCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----C--CcCHHHHHHHHHH
Confidence 4689999999999999999876553 1 2577777777643
No 356
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.67 E-value=32 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
...|+.++|+.+||+..||.+-.+- ....+++.+..++
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia 54 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999875432 2235666666654
No 357
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=29.64 E-value=42 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-..|+.+|++.++++.+||.+.++.+..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999998863
No 358
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=29.45 E-value=55 Score=28.39 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|+.+|+..++++.+||.+.++.+..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998864
No 359
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.42 E-value=60 Score=24.68 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=26.8
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhh
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~ 162 (567)
.+.+..|||+.++++...+.....+..+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5689999999999999999888777777776
No 360
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=29.26 E-value=55 Score=29.10 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.+. .|+ ..|+++||+.+|||..||-+.+.
T Consensus 22 ~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 60 (212)
T 1pb6_A 22 AILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSS
T ss_pred HHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCC
Confidence 355555555443 576 58999999999999999988774
No 361
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=29.16 E-value=50 Score=27.86 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
..+|+.+|+..++++.+|+.+.++.+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le 72 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLE 72 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 579999999999999999999999885
No 362
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.14 E-value=33 Score=26.61 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=29.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
..+||.++|..+||+..||.+-.+- .....+++.+..+++
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G----~~~~p~~~~l~~ia~ 61 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN----LQTNPSIQFLEKVSA 61 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----SCCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 4589999999999999999875432 134567777777654
No 363
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=29.07 E-value=1e+02 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.021 Sum_probs=23.8
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHH
Q 008401 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 229 ~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
.+.....|..+||+.+||+.+|+.+.++..
T Consensus 170 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 170 EMLEEGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 333345799999999999999999877654
No 364
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=29.06 E-value=49 Score=29.44 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 216 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 216 P~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-.-|..||+=+-..-+|+ ..|+++||+.+|||..||-..+.
T Consensus 26 r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 26 REEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCC
Confidence 344555555533334576 58999999999999999976653
No 365
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=29.02 E-value=62 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 20 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (207)
T 2rae_A 20 DRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFP 59 (207)
T ss_dssp HHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCC
Confidence 4456666655554 5774 8999999999999999976664
No 366
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=28.99 E-value=68 Score=28.32 Aligned_cols=26 Identities=0% Similarity=0.042 Sum_probs=24.7
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+|+.+|+..++++.+||.+.++.+.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 79999999999999999999999885
No 367
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=28.97 E-value=73 Score=29.32 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 131 ~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
..|.|..+||+.+|++...|.|..++|.+. |+
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~-gi 207 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA-GV 207 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG-TE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC-Ce
Confidence 468889999999999999999999988764 35
No 368
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=28.90 E-value=21 Score=29.94 Aligned_cols=22 Identities=23% Similarity=0.714 Sum_probs=17.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccc
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~ 28 (567)
.|+.||...+-. --.+|..||.
T Consensus 18 lCrRCG~~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGSKAYHL----QKSTCGKCGY 39 (97)
T ss_dssp CCTTTCSSCEET----TSCCBTTTCT
T ss_pred cCCCCCCccCcC----ccccCcccCC
Confidence 599999986533 2459999998
No 369
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=28.84 E-value=45 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIV-HICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv-~Vse~TIrkR~kE~~ 259 (567)
.-..++.+|++.+ +|+..||.++++.+.
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le 74 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALE 74 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3468999999999 799999999999885
No 370
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=28.81 E-value=57 Score=28.50 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+=+.+. +|+ ..|+++||+.+|||..||-+.+.
T Consensus 13 ~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 13 QHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred HHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 3455555555554 577 58999999999999999976653
No 371
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=28.78 E-value=54 Score=29.09 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (220)
T 3lhq_A 19 ILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFK 56 (220)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcC
Confidence 45555554443 5875 8999999999999999987764
No 372
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=28.68 E-value=36 Score=29.87 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+.- ...|+++||+.+||+..||-..+.
T Consensus 19 Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 19 ILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp HHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 445555444443 779999999999999999987764
No 373
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.64 E-value=59 Score=25.78 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
.+.++.+||..+++++..+.....+..+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999988888888864
No 374
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=28.62 E-value=1.2e+02 Score=31.82 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHhh--hccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHH
Q 008401 180 HKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242 (567)
Q Consensus 180 ~Rf~~~L~~~~~~~V~~~A~~iv~~~~--~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~ 242 (567)
..+|.+|.+. ..++....+.+++... ...+..+|+---|.-.|||..|++.+..+|.++|..
T Consensus 287 ~~LC~~L~~~-~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~ 350 (411)
T 4ell_A 287 NTLCERLLSE-HPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 350 (411)
T ss_dssp HHHHHHHCTT-STTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 3568888631 2345555555555433 457888999999999999999999998888877766
No 375
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=28.58 E-value=44 Score=29.14 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (194)
T 2g7s_A 13 ILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFP 50 (194)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcC
Confidence 45555555444 5774 8999999999999999987764
No 376
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.54 E-value=77 Score=26.73 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhccc--cCCCchh---HHHHHHHHHHHHHhCCCccHHHHHhhhc--cChHH
Q 008401 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNF--TKGRRTE---QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYE 149 (567)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~--~rGR~~~---~vaAACLYiACR~e~~p~tL~Diad~~~--v~v~~ 149 (567)
-+..+|..||++ ...+.. +++.....+. ..||... ......+-+ ..+-..+..+|+..++ ++..+
T Consensus 24 s~~~ia~~lgis--~~Tv~r---~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~---~~~~~~s~~~i~~~lg~~~s~~t 95 (141)
T 1u78_A 24 SLHEMSRKISRS--RHCIRV---YLKDPVSYGTSKRAPRRKALSVRDERNVIRA---ASNSCKTARDIRNELQLSASKRT 95 (141)
T ss_dssp CHHHHHHHHTCC--HHHHHH---HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH---HHHCCCCHHHHHHHTTCCSCHHH
T ss_pred CHHHHHHHHCcC--HHHHHH---HHHcccccCCcCCCCCCCcCCHHHHHHHHHH---HhCCCCCHHHHHHHHCCCccHHH
Confidence 367899999999 666554 3333322222 2354332 111222211 2223478899999888 67777
Q ss_pred HHHHHH
Q 008401 150 LGAVYL 155 (567)
Q Consensus 150 Lgr~~~ 155 (567)
|.+.++
T Consensus 96 V~r~l~ 101 (141)
T 1u78_A 96 ILNVIK 101 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 377
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=28.51 E-value=86 Score=24.64 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008401 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (567)
Q Consensus 131 ~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L 161 (567)
+-+.+..+||..++++..+|.+...+|.+.=
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3578999999999999999999888887643
No 378
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.41 E-value=35 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=16.0
Q ss_pred CCCCCCCCCceeecCCCceecCcccceec
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (567)
.||.|+.. +.. ..+...|..||.-+.
T Consensus 4 ~CP~C~~~-l~~--~~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 4 TCPVCHHA-LER--NGDTAHCETCAKDFS 29 (81)
T ss_dssp CCSSSCSC-CEE--CSSEEECTTTCCEEE
T ss_pred CCCCCCCc-ccc--CCCceECccccccCC
Confidence 68888876 333 245555777776544
No 379
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=28.37 E-value=58 Score=28.68 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.++ +|+. .|+++||+.+|||..||-..+.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 15 ELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 355555555554 6774 8999999999999999976553
No 380
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=28.36 E-value=67 Score=32.80 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhCCCccHHHHHhhhcc-ChHHHHHHHHH
Q 008401 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (567)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~Diad~~~v-~v~~Lgr~~~~ 156 (567)
|..+|..++++ . .+-.++|+......+..-.....+..|+-++ .....++.+||..+|. +...+.+.|++
T Consensus 324 ~~~~a~~~~~s--~---~~l~r~f~~~~g~s~~~~~~~~r~~~a~~~L----~~~~~~i~~ia~~~Gf~~~~~f~~~Fk~ 394 (412)
T 4fe7_A 324 VDQVLDAVGIS--R---SNLEKRFKEEVGETIHAMIHAEKLEKARSLL----ISTTLSINEISQMCGYPSLQYFYSVFKK 394 (412)
T ss_dssp HHHHHHHTTCC--H---HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--H---HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHcCCCCHHHHHHHHHH
Q ss_pred HHHHhhccccccccccCCchhhHHHHHhhh
Q 008401 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRL 186 (567)
Q Consensus 157 L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L 186 (567)
..- ..|..|-.++...+
T Consensus 395 ~~g-------------~tP~~~r~~~~~~~ 411 (412)
T 4fe7_A 395 AYD-------------TTPKEYRDVNSEVM 411 (412)
T ss_dssp HSS-------------SCHHHHHHHHCC--
T ss_pred HHC-------------cCHHHHHHhchhcc
No 381
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=28.30 E-value=68 Score=28.78 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 37899999999999999999999999875
No 382
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.27 E-value=83 Score=24.66 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=28.0
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
..+..|||+.++++..++......+.+.|+..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 36889999999999999999888888888753
No 383
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.23 E-value=45 Score=28.26 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-.+|+.+|+..++++.+||.+.++.+..
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 4689999999999999999999998853
No 384
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.21 E-value=57 Score=28.19 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=25.1
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+|+.+|++.++++.+||.+.++.+..
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 799999999999999999999998853
No 385
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.21 E-value=89 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-.+|+.+|+..++++.+|+.+.++.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999998853
No 386
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=28.18 E-value=36 Score=25.52 Aligned_cols=39 Identities=5% Similarity=0.046 Sum_probs=29.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...|+.++|+.+||+..||.+-.+ .....+++.+..+++
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~ia~ 60 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS-----NKSQPSLDMLVKVAE 60 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TSSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc-----CCCCCCHHHHHHHHH
Confidence 468999999999999999987543 223457777777654
No 387
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.15 E-value=45 Score=29.08 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-.+|+.+|++.++++.+||.+.++.+.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 3478999999999999999999999885
No 388
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.12 E-value=69 Score=28.80 Aligned_cols=29 Identities=7% Similarity=-0.122 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++...+.+..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999775
No 389
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=28.08 E-value=54 Score=28.81 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+-+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 22 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp HHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred HHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcC
Confidence 55566555543 6876 8999999999999999987764
No 390
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=27.96 E-value=56 Score=29.12 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..|++=+.+. .|+. +|+++||+.+||+..||-.++.
T Consensus 35 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 35 QIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp HHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 355555555443 6875 8999999999999999987764
No 391
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.94 E-value=1.5e+02 Score=24.56 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-..|+.+|+..++++.+|+.+.++.+.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 468999999999999999999999885
No 392
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.91 E-value=71 Score=27.14 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHHHhCCC-ccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 123 LYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 123 LYiACR~e~~p-~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+|.+....+-| .+..+||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444456667 899999999999999999888888764
No 393
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=27.50 E-value=72 Score=29.02 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=28.5
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 131 ~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
..|.+..+||+.+|++..++.|..++|.+.=-|
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 208 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGII 208 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcE
Confidence 457899999999999999999999999886333
No 394
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=27.48 E-value=57 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv-~Vse~TIrkR~kE~~~ 260 (567)
.-..++.+|++.+ |++..||.++++.+.+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3468999999999 5999999999998853
No 395
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.34 E-value=56 Score=26.76 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+..+++++|+..++++..||.+.++-|.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4579999999999999999999999884
No 396
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.24 E-value=1.3e+02 Score=27.31 Aligned_cols=29 Identities=0% Similarity=0.032 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++..++.|..++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999875
No 397
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.06 E-value=74 Score=23.36 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=19.8
Q ss_pred CHhhHHHHhccCHHHHHHHHH
Q 008401 236 SKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 236 t~~eIa~vv~Vse~TIrkR~k 256 (567)
|+.++|+.+||+.+||.+.++
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 999999999999999999884
No 398
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.02 E-value=37 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=29.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..||.+-.+ .....+++.+..+++
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~ia~ 61 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIER-----NSRNLTIKSLELIMK 61 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TCCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 468999999999999999986533 223567777776653
No 399
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=27.01 E-value=63 Score=27.85 Aligned_cols=29 Identities=3% Similarity=0.113 Sum_probs=25.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|+.+|+..++++.+||.+.++.+..
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999998853
No 400
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=26.98 E-value=40 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.1
Q ss_pred CHhhHHHHhccCHHHHHHHHHHH
Q 008401 236 SKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 236 t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
.+.+.|+.+||+..||.++++.+
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 46678999999999999999865
No 401
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=26.96 E-value=28 Score=31.92 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=17.2
Q ss_pred CCCCCCCCCceeecCCCceecCcccce
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (567)
.||.|+ ..+.++. |.++|+ |.+
T Consensus 80 ~CP~C~-G~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 80 PCEECS-GQLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCTTTC-CCEEEET--TEEEEC--CEE
T ss_pred CCCCCC-CEEEEeC--CeEEEC--CCC
Confidence 699999 5677764 899998 555
No 402
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.88 E-value=1.5e+02 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=25.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|+.+|+..++++.+||.+.++.+..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34789999999999999999999998853
No 403
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=26.87 E-value=38 Score=26.11 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g-----~~~~~~~~l~~l~~ 64 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA-----ERRLDVIEFMDFCR 64 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999875442 23567777776653
No 404
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=26.86 E-value=1e+02 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L 161 (567)
.+.+..+||..++++...|.+...+|.+.=
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 578999999999999999999888887743
No 405
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=26.85 E-value=63 Score=28.61 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+-+. .|+ ..|+.+||+.+|||..||=.++.
T Consensus 17 Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 17 ILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 55555544443 577 48999999999999999977664
No 406
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=26.81 E-value=65 Score=28.18 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+. .|+++||+.+|||..||-..++
T Consensus 12 Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 12 VVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 44555555444 5775 8999999999999999977664
No 407
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=26.79 E-value=85 Score=27.32 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
..+|+.+||..++++.+||.+-++.+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 458999999999999999999999885
No 408
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=26.67 E-value=1.2e+02 Score=25.64 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=25.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-.+|+.+|++.++++.+|+.+.++.+.
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 379999999999999999999999885
No 409
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.59 E-value=38 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
...|+.++|..+||+..||.+-.+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 468999999999999999986443
No 410
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=26.56 E-value=41 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=24.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.++||...+||+.||+.+++.+.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458999999999999999999998875
No 411
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.55 E-value=19 Score=31.13 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=21.0
Q ss_pred CCCCCCCCCc-eee-cCCCceecCcccceec
Q 008401 3 WCSSCARHVT-GHR-PYDSQLCCDRCGKVLE 31 (567)
Q Consensus 3 ~Cp~Cgs~~i-v~D-~~~G~~VC~~CG~Vle 31 (567)
.|.+||.... .+. ..+|.++|..||++.-
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 6999998743 232 3468899999998653
No 412
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=26.54 E-value=61 Score=28.98 Aligned_cols=37 Identities=14% Similarity=-0.048 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 22 Il~aA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 22 LILAARNLFI-ERPYAQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp HHHHHHHHHH-TSCCSCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred HHHHHHHHHH-HCCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 5555555544 36885 8999999999999999988774
No 413
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=26.54 E-value=50 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|.-||+=+-+. +|+. .|+++||+.+|||..||-..+.
T Consensus 14 ~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 14 RILAVAEALIQK-DGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 344455544443 5875 8999999999999999987764
No 414
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=26.53 E-value=37 Score=27.67 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.8
Q ss_pred CCCHhhHHHHhccCHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.++|.++|+.+||++.||..-.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 78999999999999999997654
No 415
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=26.50 E-value=59 Score=28.70 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.++ .|+ ..|+++||+.+||+..||-.++.
T Consensus 8 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 8 MILRTAIDYIGE-YSLETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cChhhccHHHHHHHhCCChHHHHHhCc
Confidence 355555555443 677 48999999999999999988774
No 416
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=26.50 E-value=64 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~ 255 (567)
|..||+=+-+. +|+ ..|+++||+.+|||..||-..+
T Consensus 16 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F 52 (212)
T 2ras_A 16 LVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYF 52 (212)
T ss_dssp HHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTC
T ss_pred HHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 55555555444 576 5899999999999999997665
No 417
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=26.49 E-value=65 Score=28.24 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. .|+ ..|+++||+.+||+..||-.++.
T Consensus 13 Il~aA~~l~~~-~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 13 IVAAADELFYR-QGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 44455554443 577 58999999999999999977663
No 418
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=26.49 E-value=53 Score=28.67 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
-..++.+|+..++|+.+||++.++.+...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999999988643
No 419
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=26.44 E-value=68 Score=28.88 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. .|+..|+++||+.+||+..||-.++.
T Consensus 17 Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 17 LIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcC
Confidence 45555554443 46669999999999999999988874
No 420
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=26.35 E-value=51 Score=28.92 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
-|..||+=+.+. +|+ ..|+++||+.+|||..||-..+..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (206)
T 3dew_A 12 RLMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFGG 51 (206)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSCH
T ss_pred HHHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 355555555544 587 689999999999999999877753
No 421
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.34 E-value=40 Score=26.17 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
....|+.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 62 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN-----PDNTTLTTFFKILQ 62 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC-----GGGCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 35689999999999999999876653 12356777776654
No 422
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.31 E-value=28 Score=29.33 Aligned_cols=25 Identities=20% Similarity=0.694 Sum_probs=17.5
Q ss_pred CCCCCCCCCceeecCCCceecCccccee
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
.||.|+.. +.+ ..|...|..|+.-+
T Consensus 34 ~CP~Cq~e-L~~--~g~~~hC~~C~~~f 58 (101)
T 2jne_A 34 HCPQCQHV-LDQ--DNGHARCRSCGEFI 58 (101)
T ss_dssp BCSSSCSB-EEE--ETTEEEETTTCCEE
T ss_pred cCccCCCc-cee--cCCEEECccccchh
Confidence 79999876 334 35666688888743
No 423
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=26.28 E-value=22 Score=32.66 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHccC
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~ 262 (567)
..++|+.+||..+|+|..|+.+-+++|.+..
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G 192 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELEREG 192 (213)
T ss_dssp -------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4678999999999999999999999986443
No 424
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=26.22 E-value=63 Score=29.01 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+-+.+. +|+. .|+++||+.+||+..||-..+.
T Consensus 19 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~ 57 (221)
T 3c2b_A 19 AVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFG 57 (221)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCC
Confidence 355555555544 5775 8999999999999999988775
No 425
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=26.15 E-value=14 Score=36.52 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
-+.|++|||+.+|||.+|+++-|..-
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp --------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 35799999999999999999999854
No 426
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=26.08 E-value=51 Score=29.08 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 22 Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (208)
T 3cwr_A 22 IVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFAS 59 (208)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcC
Confidence 55555555554 5775 8999999999999999977664
No 427
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=26.05 E-value=86 Score=28.94 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|.+..+||+.+|++...+.|..++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 47899999999999999999999999774
No 428
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.96 E-value=14 Score=29.06 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHhCC-CccHHHHHhhhccChHHHHHHHHHHHHHhh
Q 008401 122 CLYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (567)
Q Consensus 122 CLYiACR~e~~-p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~ 162 (567)
.|..+|++.|. |-++.-||..++-++..|...|.+|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46778998876 889999999999999999999999987653
No 429
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=25.99 E-value=42 Score=28.28 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-.+|+.+|+..++++.+||.+.++.+.
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 368999999999999999999999885
No 430
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.96 E-value=85 Score=28.09 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+-++ .|+ ..|+++||+.+|||..||=..+.
T Consensus 12 ~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 12 RIFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 344555544443 577 58999999999999999987764
No 431
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.93 E-value=53 Score=25.88 Aligned_cols=41 Identities=2% Similarity=-0.039 Sum_probs=30.7
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 231 ~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
.....||.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e~g-----~~~p~~~~l~~la~ 63 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYESG-----RAIPNNQVLGKIER 63 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 346789999999999999999875542 23467777777754
No 432
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=25.88 E-value=40 Score=26.43 Aligned_cols=27 Identities=30% Similarity=0.733 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeecCCCceecCcccceeccc
Q 008401 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (567)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~ 33 (567)
.+|-+||+-. ...| +.|.+||.+.-..
T Consensus 36 t~C~~C~~~l----~~qG-~kC~~C~~~cHkk 62 (72)
T 2fnf_X 36 GWCDLCGREV----LRQA-LRCANCKFTCHSE 62 (72)
T ss_dssp CBCTTTSSBC----SSCC-EECTTSSCEECTG
T ss_pred cchhhhhHHH----HhCc-CccCCCCCeechh
Confidence 4799998753 3456 6799999987543
No 433
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=25.84 E-value=59 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
-.+|+.+|+..++++.+||.+.++.+.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 478999999999999999999999885
No 434
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=25.75 E-value=62 Score=28.81 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (216)
T 3s5r_A 13 ELLLDAATTLFAE-QGIAATTMAEIAASVGVNPAMIHYYFK 52 (216)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHTTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHHCCCHHHHHHHcC
Confidence 3455555555443 5875 8999999999999999987764
No 435
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=25.70 E-value=54 Score=28.53 Aligned_cols=40 Identities=8% Similarity=0.208 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 216 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 216 P~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-.-|..||+=+.+. .|+. .|+++||+.+|||..||-..++
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (183)
T 1zk8_A 10 LQKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHVK 50 (183)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHcC
Confidence 34455566555554 5775 8999999999999999976653
No 436
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=25.68 E-value=88 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+-+. .|+. .|+.+||+.+|||..||=..++
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 8 ILEEAAKLFTE-KGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 44444444333 5775 7999999999999999977764
No 437
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.66 E-value=67 Score=27.54 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-.+|+.+|+..++++.+||.+.++.+..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999998853
No 438
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.64 E-value=66 Score=26.05 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=27.9
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 134 ~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
.+..+||..++++..++.....++.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4779999999999999999999999999864
No 439
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=25.57 E-value=41 Score=26.54 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..||.+--+ .....+++.+..+.+
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~-----G~~~p~~~~l~~ia~ 64 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET-----RERRLDVIEFAKWMA 64 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT-----TSSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 568999999999999999986432 223567777777653
No 440
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=25.51 E-value=1.4e+02 Score=27.63 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=25.7
Q ss_pred CccHHHHHhhhccCh-HHHHHHHHHHHHH
Q 008401 133 PFLLIDFSNYLNINV-YELGAVYLQLCQV 160 (567)
Q Consensus 133 p~tL~Diad~~~v~v-~~Lgr~~~~L~~~ 160 (567)
|.+..+||+.+|++. ..|.|..++|.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 789999999999999 7999999999774
No 441
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.49 E-value=37 Score=27.13 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=19.6
Q ss_pred CCCCCC--CCCCCceeecCCCceecC-----ccccee
Q 008401 1 MVWCSS--CARHVTGHRPYDSQLCCD-----RCGKVL 30 (567)
Q Consensus 1 M~~Cp~--Cgs~~iv~D~~~G~~VC~-----~CG~Vl 30 (567)
+++||. |+...+ .++....+.|. .||.+.
T Consensus 25 ~~~CP~p~C~~~v~-~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGAGLL-PEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCCCCC-CCSCTTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCcccE-ECCCCCcCCCCCCCCCCCCCee
Confidence 468998 887643 33455668887 888753
No 442
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=25.47 E-value=52 Score=29.57 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+-+.+. +|+ ..|+++||+.+|||..||-..+.
T Consensus 28 Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 28 VLHAVGELLLT-EGTAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 44455444443 577 58999999999999999977764
No 443
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.42 E-value=87 Score=27.30 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 215 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 215 ~P~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
+-.-|.-||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 12 ~r~~il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 53 (196)
T 3he0_A 12 KRDQILAAAEQLIAE-SGFQGLSMQKLANEAGVAAGTIYRYFS 53 (196)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 334466566655554 4775 8999999999999999976653
No 444
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.32 E-value=68 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.080 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+-+-+. +|+. .|+++||+.+|||..||-..+.
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 14 ELIINAAQKRFAH-YGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp HHHHHHHHHHHHH-HCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 3455555554443 6874 8999999999999999987764
No 445
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.31 E-value=56 Score=28.35 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
..|+.+||..+||+..||++-++.+..
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999988887754
No 446
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=25.30 E-value=53 Score=29.24 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+.+. +|+ ..|+++||+.+||+..||-.++.
T Consensus 31 Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 68 (217)
T 3mvp_A 31 ILQVAKDLFSD-KTYFNVTTNEIAKKADVSVGTLYAYFA 68 (217)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCccccCHHHHHHHhCCChhHHHHHcC
Confidence 55566555544 587 58999999999999999987774
No 447
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=25.30 E-value=63 Score=28.96 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
.-|..||+=+.+. +|+ ..|+++||+.+||+..||-..+.
T Consensus 33 ~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~ 72 (222)
T 3bru_A 33 QSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFR 72 (222)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCC
Confidence 3456666655554 687 58999999999999999987764
No 448
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=25.27 E-value=67 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=27.8
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 230 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 230 ~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
..+-++|..||++.+++|.+||.+++++|.+
T Consensus 26 ~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 26 DQLGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999999975
No 449
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=25.26 E-value=71 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~ 255 (567)
|.-||+=+-+. +|+. .|+.+||+.+|||..||=..+
T Consensus 14 Il~aA~~lf~~-~G~~~~t~~~Ia~~Agvs~gt~Y~yF 50 (204)
T 3anp_C 14 IFRAAMELFRN-RGFQETTATEIAKAAHVSRGTFFNYY 50 (204)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHcCCchHHHHHHc
Confidence 34444443333 5875 899999999999999997665
No 450
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=25.22 E-value=49 Score=29.77 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.3
Q ss_pred HHHHHHHH-HHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYV-SALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalyl-Aa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..|++-+ .+ -.|+ .+|+++||+.+||+.+|+=..++
T Consensus 24 I~~Aa~~lF~~-~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~ 62 (185)
T 3o60_A 24 LYTVLERFYVE-DRTFESISIKDLCEQARVSRATFYRHHK 62 (185)
T ss_dssp HHHHHHHHHHT-TCCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 44455544 23 3576 48999999999999999977664
No 451
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.21 E-value=1.1e+02 Score=23.38 Aligned_cols=43 Identities=5% Similarity=-0.006 Sum_probs=27.1
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCC
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~ 188 (567)
...|..+||..+||+...|.+... + ... + +...+.++|..|+.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~------g-~~~------~-~~~~~~~ia~~l~v 66 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN------G-INA------L-NAYNAALLAKILKV 66 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT------T-SSC------C-CHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc------C-CCC------C-CHHHHHHHHHHhCC
Confidence 346889999999999877764321 1 111 1 23567777777763
No 452
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=25.16 E-value=1.9e+02 Score=24.01 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 122 CLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
+|++..+..+-|.++.+||+.++++...+.+....|.+.
T Consensus 36 vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 36 TLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 333333333368999999999999999999999888775
No 453
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.12 E-value=1.2e+02 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-.+|+.+|++.++++.+|+.+.++.+.
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 4578999999999999999999999885
No 454
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.10 E-value=54 Score=28.16 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
-.+|+.+|++.++++.+||.+.++.+..
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999998853
No 455
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=25.07 E-value=68 Score=29.43 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.+. .|+. .|+++||+.+||+..||-..|.
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~ 85 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFG 85 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcC
Confidence 355566555554 5775 8999999999999999987764
No 456
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=24.95 E-value=53 Score=31.36 Aligned_cols=28 Identities=11% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.+++..++|..+|||..|||.-|+.|.
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~ 74 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLE 74 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999885
No 457
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.88 E-value=18 Score=32.23 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=9.9
Q ss_pred eeecCCCceecCcccceec
Q 008401 13 GHRPYDSQLCCDRCGKVLE 31 (567)
Q Consensus 13 v~D~~~G~~VC~~CG~Vle 31 (567)
.+....+...|.+||.+.+
T Consensus 63 ~i~~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 63 EFVEEEAVFKCRNCNYEWK 81 (139)
T ss_dssp EEEEECCEEEETTTCCEEE
T ss_pred EEEecCCcEECCCCCCEEe
Confidence 3333445556666666543
No 458
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=24.82 E-value=73 Score=28.50 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|.-||+=+-++ +|+. .|+.+||+.+|||..||=..++
T Consensus 15 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 15 LMLAALETFYR-KGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 44444444333 5875 8999999999999999976653
No 459
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=24.76 E-value=71 Score=29.24 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~ 255 (567)
|..||+=+.+. .|+. +|+++||+.+||+..||=..+
T Consensus 35 Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F 71 (230)
T 2iai_A 35 LLSVAVQVFIE-RGYDGTSMEHLSKAAGISKSSIYHHV 71 (230)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHTTTC
T ss_pred HHHHHHHHHHH-cCccccCHHHHHHHHCCChhHHHHhC
Confidence 55555555554 5775 899999999999999997655
No 460
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.75 E-value=68 Score=25.58 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=22.9
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhh
Q 008401 134 FLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (567)
Q Consensus 134 ~tL~Diad~~~v~v~~Lgr~~~~L~~~L~ 162 (567)
.+..+||..++++..++.....+..+.|.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36789999999999888777666666654
No 461
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=24.74 E-value=73 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~ 255 (567)
|.-||+-+-++ +|+. .|+++||+.+|||..||=..+
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 19 IMQATYRALRE-HGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCChhHHhhhc
Confidence 45555554443 5764 899999999999999997655
No 462
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=24.73 E-value=74 Score=28.31 Aligned_cols=38 Identities=32% Similarity=0.285 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 008401 217 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 217 ~~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~ 255 (567)
.-|.-||+=+-++ +|+. .|+.+||+.+|||..||=..+
T Consensus 13 ~~Il~aA~~lf~~-~G~~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 13 EKILQAAIEVISE-KGLDKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCchHHHHhC
Confidence 3455555554443 6875 899999999999999996554
No 463
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=24.68 E-value=1.1e+02 Score=27.68 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=25.6
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-.+|+.+||..++++.+||.+.++.+.
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le 82 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLE 82 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4579999999999999999999999885
No 464
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=24.64 E-value=47 Score=24.55 Aligned_cols=39 Identities=5% Similarity=-0.044 Sum_probs=29.6
Q ss_pred CCCCHhhHHHHhc--cCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVH--ICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~--Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...|+.++|..+| |+..||.+-.+- ....+++.+..+++
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g-----~~~~~~~~l~~la~ 60 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG-----DRAVTVQRLAELAD 60 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4689999999999 999999875442 23467777777754
No 465
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.62 E-value=36 Score=32.04 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=18.3
Q ss_pred CCCCCCCCCceeecCCCceecCccccee
Q 008401 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (567)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (567)
.||.||...+--.+.+ -..|..||...
T Consensus 115 ~Cp~Cg~g~fma~h~d-R~~CGkC~~t~ 141 (189)
T 2xzm_9 115 GCPKCGPGIFMAKHYD-RHYCGKCHLTL 141 (189)
T ss_dssp ECSTTCSSCEEEECSS-CEEETTTCCCB
T ss_pred cCCccCCCccccCccC-CCccCCceeEE
Confidence 4888887655444443 45888888864
No 466
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=24.56 E-value=75 Score=23.40 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=26.1
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i 163 (567)
..+..+||..++++...+.+...+..+.|.-
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998888888777753
No 467
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=24.54 E-value=41 Score=25.89 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=19.9
Q ss_pred CHhhHHHHhccCHHHHHHHHHH
Q 008401 236 SKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 236 t~~eIa~vv~Vse~TIrkR~kE 257 (567)
|+.++|+.+||+..||.+-.+-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 9999999999999999987664
No 468
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.44 E-value=37 Score=35.84 Aligned_cols=28 Identities=18% Similarity=0.597 Sum_probs=21.7
Q ss_pred CCCC--CCCCCceeecCCCceecCcccceecc
Q 008401 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLED 32 (567)
Q Consensus 3 ~Cp~--Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (567)
.||. |++. +.+..+|.+.|..||.+.++
T Consensus 310 aC~~~~C~kk--v~~~~~g~~~C~~C~~~~~~ 339 (444)
T 4gop_C 310 ACASEGCNKK--VNLDHENNWRCEKCDRSYAT 339 (444)
T ss_dssp ECCSTTCCCB--EEECTTSCEEETTTTEEESS
T ss_pred cCCcccCCCc--cccCCCccEECCCCCCcCcc
Confidence 5999 9986 33445789999999988653
No 469
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.41 E-value=1.2e+02 Score=27.65 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHh--------CCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 116 EQVQASCLYLACRQK--------SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 116 ~~vaAACLYiACR~e--------~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
..++...+.++-+.. ..|.+..+||+.+|++..+|.|..++|.+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 345555555554422 347899999999999999999999999875
No 470
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.39 E-value=38 Score=29.51 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (567)
Q Consensus 218 ~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~kE 257 (567)
-|.-||+-+.+. .|+ ..|+++||+.+|||..||-..+..
T Consensus 10 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 10 KILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccc
Confidence 455566555554 577 589999999999999999877763
No 471
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.32 E-value=72 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.5
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 134 ~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
.+..|||+.+++++.++......+.+.|++.
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4779999999999999999999999988864
No 472
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=24.24 E-value=67 Score=29.37 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.+. .|+. .|+++||+.+||+..||-..+.
T Consensus 43 ~Il~AA~~lf~e-~G~~~~tv~~IA~~AGvs~~tlY~~F~ 81 (214)
T 2guh_A 43 LIVDAAGRAFAT-RPYREITLKDIAEDAGVSAPLIIKYFG 81 (214)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cChhhcCHHHHHHHhCCCHHHHHHHcC
Confidence 355555555443 6876 8999999999999999988774
No 473
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=24.18 E-value=91 Score=26.36 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=24.6
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
.+|+.+|+..++++.+||.+.++.+.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 78999999999999999999999885
No 474
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=24.17 E-value=51 Score=31.55 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
|.++ |.+++|+..|||..|||+.|..|.
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~ 58 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLV 58 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5667 899999999999999999999885
No 475
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.13 E-value=49 Score=31.83 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=24.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...|+|+.||+.++.-..
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567999999999999999999997664
No 476
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=24.09 E-value=95 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|.-||+=+-++ +|+. .|+.+||+.+|||..||=..+.
T Consensus 17 Il~aA~~lf~~-~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 17 IIQAATAAFIS-KGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 44444443332 5876 8999999999999999987763
No 477
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=24.09 E-value=30 Score=22.88 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.1
Q ss_pred CCceecCcccce
Q 008401 18 DSQLCCDRCGKV 29 (567)
Q Consensus 18 ~G~~VC~~CG~V 29 (567)
.|+.+|..||.+
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 477888888776
No 478
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=23.99 E-value=88 Score=30.07 Aligned_cols=48 Identities=6% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhH
Q 008401 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (567)
Q Consensus 222 AalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 275 (567)
+.-||-..+ ....|+.+||+.+|+|..++++.++... .+|+.+|....
T Consensus 8 ~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~~-----g~s~~~~~~~~ 55 (292)
T 1d5y_A 8 LLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVT-----GHAIGAYIRAR 55 (292)
T ss_dssp HHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 444555544 5679999999999999999999999875 47888887654
No 479
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=23.93 E-value=44 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=28.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..||.+- ++++.+++-+..+..
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~-------E~G~~~~~~l~~i~~ 84 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNA-------EKGKVQLDIMIAILM 84 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH-------HTTCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHH-------HCCCCCHHHHHHHHH
Confidence 5689999999999999999853 134567776666643
No 480
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=23.92 E-value=45 Score=24.91 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=20.4
Q ss_pred CHhhHHHHhccCHHHHHHHHHHH
Q 008401 236 SKSDIVKIVHICEATLMKRLIEF 258 (567)
Q Consensus 236 t~~eIa~vv~Vse~TIrkR~kE~ 258 (567)
++.+.|+..||+..|+.++++.+
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 56788999999999999999875
No 481
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=23.88 E-value=37 Score=30.38 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 17 ~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 55 (217)
T 3nrg_A 17 RLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFA 55 (217)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCTTGGGGTCS
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHcC
Confidence 355555555554 6886 8999999999999999976653
No 482
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.86 E-value=46 Score=26.19 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
...||.++|..+||+..||.+-.+- ....+++.+..+++
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 67 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG-----INALNAYNAALLAK 67 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4679999999999999999875542 23467777766653
No 483
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=23.66 E-value=45 Score=26.97 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRL 255 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~ 255 (567)
...||.++|..+||+..||.+--
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 56899999999999999997753
No 484
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=23.63 E-value=60 Score=27.91 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-.+|+.+|+..++++.+||.+.++.+.
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999885
No 485
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=23.62 E-value=1.2e+02 Score=28.61 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008401 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (567)
Q Consensus 132 ~p~tL~Diad~~~v~v~~Lgr~~~~L~~~ 160 (567)
.|++..+||+.+|++...|.|..++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999999875
No 486
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=23.57 E-value=17 Score=33.61 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred cccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 209 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 209 ~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+...||.|.-. ...+-.+-.++....|..+||+.+||+.+|+.+.+++-..
T Consensus 134 G~~~Gr~~~~~-~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 134 GRIGGRPPKLT-KAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------------------------------
T ss_pred cccCCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhh
Confidence 44568776422 1222222233334579999999999999999998887653
No 487
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=23.36 E-value=83 Score=27.35 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.3
Q ss_pred cCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 231 HGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 231 ~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
+|+. .|+.+||+.+|||..||=..++
T Consensus 18 ~Gy~~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 18 KGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cCCccCCHHHHHHHhCCCcHHHHHHcC
Confidence 5875 8999999999999999976653
No 488
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.35 E-value=62 Score=25.82 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=27.9
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008401 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (567)
Q Consensus 133 p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~ 164 (567)
..+..+||..++++..++.....++.+.|+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999998888763
No 489
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=23.28 E-value=55 Score=29.18 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHcc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~t 261 (567)
.-..++.+|+..++++.+||.+.++.|.+.
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345899999999999999999999988643
No 490
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=23.27 E-value=51 Score=32.10 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=24.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 233 ~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
...|.+|||...+||+.||+.+++.+.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999998885
No 491
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=23.26 E-value=1.1e+02 Score=25.45 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
+-.+|+.+|++.++++.+|+.+.++.+..
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34789999999999999999999998853
No 492
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.26 E-value=56 Score=31.21 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 232 g~~~-t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
|.++ |.+++|+..|||..|||+.|..|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5667 8999999999999999999998853
No 493
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=23.19 E-value=57 Score=28.78 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 218 ~IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-|..||+=+.+. .|+. .|+++||+.+|||..||-..+.
T Consensus 11 ~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 11 RLKRAALELYSE-HGYDNVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHh-cCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 345555554443 6775 8999999999999999977664
No 494
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=23.13 E-value=50 Score=29.77 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.0
Q ss_pred CCCCCHhhHHHHh-----ccCHHHHHHHHHHHHcc
Q 008401 232 GLKFSKSDIVKIV-----HICEATLMKRLIEFENT 261 (567)
Q Consensus 232 g~~~t~~eIa~vv-----~Vse~TIrkR~kE~~~t 261 (567)
.--.||.|++..+ +||++||++=++|+..+
T Consensus 17 ~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~v 51 (149)
T 1b4a_A 17 NDIETQDELVDRLREAGFNVTQATVSRDIKEMQLV 51 (149)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCE
T ss_pred CCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCe
Confidence 4557999999999 99999999999999533
No 495
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.08 E-value=1.4e+02 Score=26.14 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHHc
Q 008401 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (567)
Q Consensus 193 ~V~~~A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vse~TIrkR~kE~~~ 260 (567)
.+......+-..+....-..|=.|.-+. +|++.....+-.+|+.+|+..++++.+||.+.++.+..
T Consensus 23 ~l~~~~~~~~~~~~~~~~~~glt~~q~~--vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 23 QLWRTYDRMKAIEEEIFSQFELSAQQYN--TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHH--HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCHHHHH--HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
No 496
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=23.07 E-value=63 Score=28.06 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHH
Q 008401 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (567)
Q Consensus 232 g~~~t~~eIa~vv~Vse~TIrkR~kE~~ 259 (567)
+-.+|+.+||..++++.+|+.+.++.+.
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999885
No 497
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.04 E-value=80 Score=28.13 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 008401 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 219 IaaAalylAa~~~g~~-~t~~eIa~vv~Vse~TIrkR~k 256 (567)
|..||+=+-+. .|+. .|+++||+.+|||..||=..+.
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 19 LLDIAATLFAE-RGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 44455444443 5875 8999999999999999977663
No 498
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=22.96 E-value=67 Score=30.93 Aligned_cols=99 Identities=9% Similarity=0.057 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHhhhCCCCCHHHHHH
Q 008401 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (567)
Q Consensus 118 vaAACLYiACR~e~~p~tL~Diad~~~v~v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~~~~~V~~~ 197 (567)
+..++-||--.. ..++++.++|..++++...|.+.|++. +| ..|..||.+. . ...
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~---~g----------~s~~~~~~~~----R-------l~~ 59 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDV---TG----------HAIGAYIRAR----R-------LSK 59 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHH---HS----------SCHHHHHHHH----H-------HHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH----H-------HHH
Confidence 344555554333 568999999999999999999887754 33 3455665533 0 011
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHh
Q 008401 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (567)
Q Consensus 198 A~~iv~~~~~~~i~~GR~P~~IaaAalylAa~~~g~~~t~~eIa~vv~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 274 (567)
|+-+|. .-..++.+||..+|-+ .....+.++... .+|+.+|++.
T Consensus 60 ------------------------a~~~L~----~~~~~i~~ia~~~Gf~~~~~f~r~fk~~~-----g~~P~~~r~~ 104 (292)
T 1d5y_A 60 ------------------------SAVALR----LTARPILDIALQYRFDSQQTFTRAFKKQF-----AQTPALYRRS 104 (292)
T ss_dssp ------------------------HHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHC
T ss_pred ------------------------HHHHHh----cCCCCHHHHHHHcCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 221221 1246788888888854 557788887775 5788888876
No 499
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.92 E-value=57 Score=28.88 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 008401 216 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (567)
Q Consensus 216 P~~IaaAalylAa~~~g~-~~t~~eIa~vv~Vse~TIrkR~k 256 (567)
-.-|..||+=+.++ .|+ ..|+++||+.+||+..||-..+.
T Consensus 11 r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~ 51 (193)
T 2dg8_A 11 RERILAATLDLIAE-EGIARVSHRRIAQRAGVPLGSMTYHFT 51 (193)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTHHHHHHCS
T ss_pred HHHHHHHHHHHHHH-hChhhccHHHHHHHhCCCchhhheeCC
Confidence 34566666665554 577 58999999999999999987764
No 500
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.90 E-value=18 Score=35.90 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHhHH
Q 008401 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (567)
Q Consensus 234 ~~t~~eIa~vv~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 276 (567)
+.|++|||+.+|||.+|+++-|..-. .-+.-|.+-.+...+
T Consensus 4 ~~ti~diA~~agVS~~TVSr~Ln~~~--~vs~~tr~rV~~~~~ 44 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQ--QVSEQLREKVMQAVD 44 (339)
T ss_dssp -------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC--CCCHHHHHHHHHHHH
Confidence 57999999999999999999997532 223344444444443
Done!