BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008404
         (567 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUM4|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana
           GN=At3g27390 PE=1 SV=2
          Length = 588

 Score =  407 bits (1046), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/534 (40%), Positives = 315/534 (58%), Gaps = 19/534 (3%)

Query: 25  FLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLP 84
           FLG +KG+++CP+  L++ IGN  VI+ L P H+ WT Y++V   ++   LK+ +   LP
Sbjct: 26  FLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIVWTFYSIVSAKQVGPILKIFLCLCLP 85

Query: 85  ALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCT 144
           A   LW  + I GSVL G  YGFF+P  + F+A      Y+  FHC  DGTW T++ S T
Sbjct: 86  AAIILWPIVGILGSVLGGALYGFFSPIFATFDAVGEGKPYQ-FFHCFYDGTWSTMQRSFT 144

Query: 145 MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAV 204
           +VRDF D+C+HSY   + E+++S    +   +RL  +PG ++  +LG++VD P+ +++A+
Sbjct: 145 VVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILVDPPVISLVAI 204

Query: 205 IKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIG 264
            KSPYMLFKGW RL HDLI REGPFLET C+PIAGL ILLWP+ V G+++ ++ SSIF+G
Sbjct: 205 CKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLG 264

Query: 265 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 324
            Y  VV YQE SF  G+ Y++A V+ +DEY+ D L L EG+  P+P+YR+K    +   P
Sbjct: 265 AYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPT---P 321

Query: 325 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELL 384
             G     G   +AS+              SVR  + ++K + +   +   C   G  L 
Sbjct: 322 FSGPVPRLGSVKNASS----------MRGGSVRVPMIDIKPLDLLNELFVECRRYGEVLA 371

Query: 385 DADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSV-EITH 443
              +I   D+++   A+      ++  GLP Y  L  +L S+KA S GLLL D V EIT 
Sbjct: 372 TKGLINSKDIEE---ARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITT 428

Query: 444 LNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPE 503
           +NRP +   DWF NP ++LKEQ+    L+E E  YL ++VL     ER+++ +     P 
Sbjct: 429 MNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLKSSNAISASPP 488

Query: 504 DALRA-AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSD 556
              R  A++   +RRM GL ++VS++PT+RR F  +VK L    + +   S  D
Sbjct: 489 LTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNNSAKD 542


>sp|A1RZ10|COXX_THEPD Protoheme IX farnesyltransferase OS=Thermofilum pendens (strain Hrk
           5) GN=ctaB PE=3 SV=1
          Length = 282

 Score = 32.7 bits (73), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 182 PGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWF 216
           P   +AGLLG ++DI +YTV+   KSP+ +  G F
Sbjct: 107 PYVFVAGLLGFLIDIAVYTVLLKRKSPWSVVFGGF 141


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.142    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,854,311
Number of Sequences: 539616
Number of extensions: 8884234
Number of successful extensions: 25962
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 25952
Number of HSP's gapped (non-prelim): 7
length of query: 567
length of database: 191,569,459
effective HSP length: 123
effective length of query: 444
effective length of database: 125,196,691
effective search space: 55587330804
effective search space used: 55587330804
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)