Query 008404
Match_columns 567
No_of_seqs 48 out of 50
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 01:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pzl_A Hepatocyte nuclear fact 94.7 0.26 9.1E-06 45.2 11.1 116 414-542 84-200 (237)
2 2p1t_A Retinoic acid receptor 94.0 0.16 5.3E-06 47.2 8.1 114 418-543 88-201 (240)
3 2nxx_A Ultraspiracle (USP, NR2 93.9 0.32 1.1E-05 45.2 10.1 114 417-542 83-196 (235)
4 2iz2_A FTZ-F1 alpha, nuclear h 93.7 0.56 1.9E-05 44.2 11.5 114 417-542 92-206 (243)
5 3k6p_A Steroid hormone recepto 92.7 0.29 1E-05 46.2 7.9 114 415-541 92-209 (248)
6 3ltx_A Estrogen receptor; cons 92.1 0.45 1.5E-05 44.8 8.3 114 416-541 81-194 (243)
7 3oll_A Estrogen receptor beta; 92.1 0.83 2.8E-05 42.6 10.0 119 417-541 79-201 (240)
8 1lbd_A RXR_LBD, retinoid X rec 90.8 0.47 1.6E-05 45.4 7.1 114 417-542 129-242 (282)
9 1ymt_A Steroidogenic factor 1; 90.7 0.86 3E-05 42.7 8.7 116 416-542 90-208 (246)
10 1g2n_A Ultraspiracle protein; 90.1 0.72 2.5E-05 43.8 7.6 116 416-542 87-219 (264)
11 1fcy_A RAR-gamma-1, retinoic a 90.1 0.75 2.6E-05 42.8 7.6 107 423-542 96-202 (236)
12 2e2r_A Estrogen-related recept 90.0 0.71 2.4E-05 43.4 7.5 111 417-540 94-204 (244)
13 3kmr_A Retinoic acid receptor 90.0 0.91 3.1E-05 43.6 8.3 102 429-542 125-226 (266)
14 3tx7_B Nuclear receptor subfam 89.7 0.86 2.9E-05 46.2 8.2 114 418-542 198-314 (352)
15 3plz_A FTZ-F1 related protein; 89.6 1.3 4.6E-05 42.2 9.1 116 416-542 101-219 (257)
16 3dzy_A Retinoic acid receptor 89.2 0.83 2.8E-05 47.8 7.9 103 428-542 324-427 (467)
17 1l2j_A Estrogen receptor beta; 89.1 0.82 2.8E-05 43.9 7.2 120 416-542 104-228 (271)
18 3mnp_A Glucocorticoid receptor 89.1 1.8 6.1E-05 41.4 9.6 114 417-542 88-206 (261)
19 3ipq_A Oxysterols receptor LXR 88.5 1.2 4E-05 43.1 7.9 105 427-542 143-247 (283)
20 1yye_A ER-beta, estrogen recep 87.4 3.9 0.00013 39.2 10.7 122 417-542 77-200 (268)
21 3v3e_B Nuclear receptor subfam 87.3 1.5 5.1E-05 42.1 7.8 103 428-542 108-210 (257)
22 3ilz_A Thyroid hormone recepto 87.1 1.8 6.2E-05 41.4 8.2 102 429-542 127-228 (267)
23 3cqv_A Nuclear receptor subfam 87.0 1.5 5E-05 39.9 7.1 105 427-543 75-179 (199)
24 1ovl_A Orphan nuclear receptor 86.1 4.3 0.00015 38.5 10.2 113 417-542 120-232 (271)
25 1xdk_B RAR-beta, retinoic acid 85.8 1.3 4.3E-05 43.3 6.5 71 418-490 118-188 (303)
26 2ocf_A Estrogen receptor; estr 85.2 2.9 9.9E-05 41.1 8.7 72 416-489 89-161 (298)
27 3n00_A REV-ERBA-alpha; reverba 84.4 4.2 0.00014 38.6 9.2 103 428-542 121-223 (245)
28 1sqn_A PR, progesterone recept 83.5 6.6 0.00023 37.4 10.2 116 417-542 87-205 (261)
29 3cjw_A COUP transcription fact 82.7 5.5 0.00019 37.1 9.1 111 417-541 83-196 (244)
30 1xvp_B Orphan nuclear receptor 82.1 4.2 0.00014 38.0 8.0 79 455-542 136-214 (246)
31 2r40_D Ecdysone receptor, 20-h 81.0 5.4 0.00018 38.1 8.5 102 428-542 124-228 (266)
32 1t7r_A Androgen receptor; nucl 80.9 4.8 0.00016 38.5 8.1 116 418-542 96-213 (269)
33 1nq7_A Nuclear receptor ROR-be 80.2 8.7 0.0003 36.0 9.6 101 428-542 106-206 (244)
34 3f5c_B Nuclear receptor subfam 78.6 5.6 0.00019 38.4 7.9 78 455-543 155-232 (268)
35 1xpc_A Estrogen receptor; nucl 77.5 8 0.00027 36.2 8.4 72 416-489 80-152 (248)
36 2nxx_E Ecdysone receptor (ECR, 77.4 8.8 0.0003 36.1 8.7 103 428-543 108-211 (248)
37 3u9q_A Peroxisome proliferator 76.4 10 0.00034 36.6 9.0 104 428-543 127-233 (269)
38 3vhv_A Mineralocorticoid recep 76.2 11 0.00036 36.0 8.9 69 418-487 87-156 (260)
39 2o4j_A Vitamin D3 receptor; nu 75.9 6.4 0.00022 38.2 7.5 61 429-489 116-177 (292)
40 3vhu_A Mineralocorticoid recep 75.5 7.4 0.00025 38.2 7.9 113 418-542 121-238 (294)
41 1z5x_E Ecdysone receptor ligan 74.8 8.7 0.0003 38.0 8.2 102 429-543 173-275 (310)
42 3b0t_A Vitamin D3 receptor; nu 73.6 9.2 0.00031 35.8 7.7 77 455-542 140-218 (254)
43 1pdu_A DHR38, nuclear hormone 72.4 7 0.00024 37.0 6.6 66 418-486 94-159 (244)
44 1osh_A BIle acid receptor; nuc 71.5 11 0.00037 34.8 7.5 78 455-543 121-198 (232)
45 3dzy_D Peroxisome proliferator 71.1 18 0.0006 37.2 9.7 104 428-543 276-382 (419)
46 3vi8_A Peroxisome proliferator 68.6 25 0.00086 34.0 9.7 77 455-542 159-235 (273)
47 2hc4_A Vitamin D receptor; alp 67.5 14 0.00048 36.2 7.8 77 455-542 186-262 (302)
48 1hg4_A Ultraspiracle; nuclear 66.6 17 0.00057 34.5 7.9 71 461-542 163-233 (279)
49 3p0u_A Nuclear receptor subfam 63.6 27 0.00092 32.9 8.6 113 418-542 81-200 (249)
50 1nrl_A Orphan nuclear receptor 60.0 68 0.0023 31.8 11.2 77 455-542 201-279 (316)
51 1n83_A Nuclear receptor ROR-al 60.0 35 0.0012 32.7 8.9 35 455-489 146-180 (270)
52 3l0l_A Nuclear receptor ROR-ga 43.1 62 0.0021 30.4 7.4 36 455-490 137-172 (248)
53 3up3_A Acedaf-12; ligand bindi 40.7 74 0.0025 30.1 7.6 96 436-543 108-210 (243)
54 2kz2_A Calmodulin, CAM; TR2C, 35.4 1E+02 0.0035 24.1 6.6 61 360-434 22-82 (94)
55 2oqj_C Peptide 2G12.1 (ACPPSHV 34.1 9.3 0.00032 26.1 0.2 14 296-309 5-18 (26)
56 2khq_A Integrase; all-alpha, s 31.9 60 0.0021 25.0 4.6 48 501-553 42-89 (110)
57 2khv_A Phage integrase; soluti 27.7 37 0.0013 26.7 2.7 46 501-552 42-87 (106)
58 2oxo_A Integrase; DNA-binding 26.3 1E+02 0.0034 22.7 4.8 46 502-552 42-87 (103)
59 2kiw_A INT protein; alpha, str 23.8 1.2E+02 0.0041 23.4 5.0 46 502-552 40-85 (111)
60 2cu7_A KIAA1915 protein; nucle 22.9 76 0.0026 24.9 3.7 51 466-542 7-57 (72)
61 3arc_I Photosystem II reaction 22.3 48 0.0017 24.8 2.2 16 15-30 10-25 (38)
62 2kj9_A Integrase; DNA_BRE_C su 22.1 91 0.0031 25.1 4.1 47 502-553 51-97 (118)
63 2kj8_A Putative prophage CPS-5 21.7 99 0.0034 24.6 4.2 47 502-553 46-92 (118)
64 2kkp_A Phage integrase; SAM-li 21.7 1.2E+02 0.0042 23.4 4.7 49 501-553 48-96 (117)
65 2x4h_A Hypothetical protein SS 21.1 1E+02 0.0036 25.4 4.4 24 460-485 2-25 (139)
66 1srz_A Gamma-aminobutyric acid 20.8 43 0.0015 25.4 1.8 20 126-146 49-68 (68)
No 1
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=94.65 E-value=0.26 Score=45.16 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=77.0
Q ss_pred chHHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHH-HHHHHHHhccCChhHHhHHHHhhhcCCCcccc
Q 008404 414 PCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIM-VLKEQISVLKLTEPEVRYLEKVVLFGSTTERM 492 (567)
Q Consensus 414 PayslL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~Pll-viKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~ 492 (567)
..+.+|..--+|.+ +++.+++.||..+.. +.++..-+.-++++++ -+-+.++.+++|++|=.||+-+++++.|....
T Consensus 84 ~~~~~L~~a~~s~~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l 161 (237)
T 1pzl_A 84 GEHLLLGATKRSMV-FKDVLLLGNDYIVPR-HCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGL 161 (237)
T ss_dssp HHHHHHHHHHHHTT-SSSEEECTTSCEEES-SCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTC
T ss_pred HHHHHHHHHHHhhc-cCCceeecCCcccCc-cchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCC
Confidence 35677777778876 678899999988754 3344322233456654 56689999999999999999999998765432
Q ss_pred ccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 493 EAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 493 ~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
. ....+.+- -+.+++-|+--++ .+.|....||-++++.|
T Consensus 162 ~--------~~~~ve~~-q~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~l 200 (237)
T 1pzl_A 162 S--------DPGKIKRL-RSQVQVSLEDYIN--DRQYDSRGRFGELLLLL 200 (237)
T ss_dssp S--------CHHHHHHH-HHHHHHHHHHHHH--SSSSCCTTHHHHHHTHH
T ss_pred C--------cHHHHHHH-HHHHHHHHHHHHH--hcCCChhhHHHHHHHHH
Confidence 2 23333222 2233444444443 36777778998887766
No 2
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=93.96 E-value=0.16 Score=47.24 Aligned_cols=114 Identities=17% Similarity=0.264 Sum_probs=70.2
Q ss_pred HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccC
Q 008404 418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDN 497 (567)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~ 497 (567)
++..--||.+. ++++++.||..++..+-..+.+-+.+-..+.-+-+.++.+++|++|=.||+-+++++.|...
T Consensus 88 il~~a~rs~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~g------ 160 (240)
T 2p1t_A 88 IASFSHRSIAV-KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG------ 160 (240)
T ss_dssp HHHHHHHTTTS-SSEEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTT------
T ss_pred HHHHHHhhccC-CCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCC------
Confidence 34433455554 57899999987765432223333343334445667899999999999999999999876433
Q ss_pred CCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHH
Q 008404 498 GGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALV 543 (567)
Q Consensus 498 ~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 543 (567)
......+.+.| |.+.+-|+-.++. ++|....||-+++..|-
T Consensus 161 --l~~~~~ve~~q-~~~~~~L~~y~~~--~~~~~~~Rf~~LL~~l~ 201 (240)
T 2p1t_A 161 --LSNPAEVEALR-EKVYASLEAYCKH--KYPEQPGRFAKLLLRLP 201 (240)
T ss_dssp --CSCHHHHHHHH-HHHHHHHHHHHHH--HCTTCTTHHHHHHTTHH
T ss_pred --CCCHHHHHHHH-HHHHHHHHHHHHH--hCCCchhHHHHHHHHHH
Confidence 22333443332 2333334444433 57777788888876543
No 3
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=93.89 E-value=0.32 Score=45.19 Aligned_cols=114 Identities=12% Similarity=0.194 Sum_probs=72.7
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWD 496 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd 496 (567)
.+|..--+|.+. ++++++.||..++...-....+-+++-..+.-+-.+++.++++++|=.||+-++|++.|...
T Consensus 83 ~~L~~a~rs~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~g----- 156 (235)
T 2nxx_A 83 LIAAFSHRSMQA-QDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRG----- 156 (235)
T ss_dssp HHHHHHHTTSSS-SSSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTT-----
T ss_pred HHHHHHHhcccC-CCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----
Confidence 444444567766 68999999998876553334444554444445778999999999999999999999876432
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 497 NGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 497 ~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
+...+.+.+.|= .+.+=|+-.++ .++|.-..||-+++..|
T Consensus 157 ---L~~~~~v~~~q~-~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 196 (235)
T 2nxx_A 157 ---IKSVQEVEMLRE-KIYGVLEEYTR--TTHPNEPGRFAKLLLRL 196 (235)
T ss_dssp ---CSCHHHHHHHHH-HHHHHHHHHHH--HHCTTCTTHHHHHHTHH
T ss_pred ---CCCHHHHHHHHH-HHHHHHHHHHH--HhCCChhhHHHHHHHHh
Confidence 223333333321 12222222222 35777778899988655
No 4
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=93.74 E-value=0.56 Score=44.21 Aligned_cols=114 Identities=12% Similarity=0.204 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhcC-CCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccc
Q 008404 417 SFLQTLLYSIKAG-SGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAW 495 (567)
Q Consensus 417 slL~~LL~SaKan-S~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~w 495 (567)
.+|..--+|.+.+ ++++++.||..++..+-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++.|.....
T Consensus 92 ~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~-- 168 (243)
T 2iz2_A 92 LVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQ-LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIV-- 168 (243)
T ss_dssp HHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTSSTTS-SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCS--
T ss_pred HHHHHHHHhhhcCCCCceeecCCcccChhhHhhcchHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcc--
Confidence 3444445677654 678899999876554322222223 346677777899999999999999999999987643322
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 496 DNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 496 d~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
..+.+.+.| +.+.+=|+--++ .++|.-..||-+++..|
T Consensus 169 ------~~~~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 206 (243)
T 2iz2_A 169 ------NRKTVSEGH-DNVQAALLDYTL--TCYPSVNDKFRGLVNIL 206 (243)
T ss_dssp ------CHHHHHHHH-HHHHHHHHHHHH--HHCTTSTTHHHHHHTHH
T ss_pred ------cHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHH
Confidence 333344333 222233333333 25666667888776554
No 5
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=92.72 E-value=0.29 Score=46.25 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccc
Q 008404 415 CYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEA 494 (567)
Q Consensus 415 ayslL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~ 494 (567)
...+|..--+|.+.+ +++++.||..++...-....+.| +++++.-+-.+++.++++++|=.||+-++|++.|.....
T Consensus 92 el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~- 168 (248)
T 3k6p_A 92 EVLVLGVAQRSLPLQ-DELAFAEDLVLDEEGARAAGLGE-LGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIE- 168 (248)
T ss_dssp HHHHHHHHHHHTTSS-SCEEEETTEEECHHHHHHTTTTT-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCS-
T ss_pred HHHHHHHHHHccCCC-CeEEeCCCcccChhhhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCC-
Confidence 345566666777777 89999999877542111112334 357777788899999999999999999999987754322
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCc----hhhHhHHHHHHH
Q 008404 495 WDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFP----TYRRRFRQVVKA 541 (567)
Q Consensus 495 wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~P----T~RRrf~~lvK~ 541 (567)
....+.+.| +.+.+=|+-.++ +++| .-..||-+++-.
T Consensus 169 -------~~~~ve~lq-~~~~~aL~~y~~--~~~~~~~~~~~~Rf~~LL~~ 209 (248)
T 3k6p_A 169 -------DAEAVEQLR-EALHEALLEYEA--GRAGPGGGAERRRAGRLLLT 209 (248)
T ss_dssp -------CHHHHHHHH-HHHHHHHHHHHH--TC----CCCCCH-HHHHHTT
T ss_pred -------CHHHHHHHH-HHHHHHHHHHHH--HhCCCCccchHHHHHHHHHH
Confidence 333333333 122222333333 4677 677888887543
No 6
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=92.15 E-value=0.45 Score=44.75 Aligned_cols=114 Identities=17% Similarity=0.266 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccc
Q 008404 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAW 495 (567)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~w 495 (567)
..+|..--+|...+...++..||..++........+-+ +++++.-+-++++.++++++|=.||+-++|++.|.....
T Consensus 81 l~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~-- 157 (243)
T 3ltx_A 81 LLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTE-IFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLA-- 157 (243)
T ss_dssp HHHHHHHHHTTTTTTSEEEEETTEEEEHHHHHHTTCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCT--
T ss_pred HHHHHHHHHhccCCCCeEEecCCcccchhhhcccCHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCC--
Confidence 44555556777777777999999877642211112223 346666777899999999999999999999998754332
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHH
Q 008404 496 DNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKA 541 (567)
Q Consensus 496 d~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~ 541 (567)
....+.+.| +.+.+=|+-.++ .++|.-..||-+++-.
T Consensus 158 ------~~~~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~ 194 (243)
T 3ltx_A 158 ------SYNQIFNMQ-QSLLDAIVDTAQ--KYHPDNVRHVPAVLLL 194 (243)
T ss_dssp ------THHHHHHHH-HHHHHHHHHHHH--HHSTTCSSHHHHHHHH
T ss_pred ------CHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHH
Confidence 333344333 222222322222 2456666677776543
No 7
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=92.11 E-value=0.83 Score=42.58 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAW 495 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~w 495 (567)
.+|..--+|.+.+ +.+++.||..++....- ...+-++ ++++.-+-.+++.++++++|=.||+-++|++.|.....
T Consensus 79 ~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs-- 154 (240)
T 3oll_A 79 LMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEI-FDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLV-- 154 (240)
T ss_dssp HHHHHHHHHTTST-TEEEEETBEEEEGGGGGGSTTHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCC--
T ss_pred HHHHHHHHccCCC-CeeEecCCcccchhhHHHHhhHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcc--
Confidence 4444445666644 78999999887654321 2233443 46777788899999999999999999999998754322
Q ss_pred cCCCCCC--hhHHHHHHHHHHHHhhhhhhh-hcccCchhhHhHHHHHHH
Q 008404 496 DNGGLLP--EDALRAAQIQGISRRMIGLIR-SVSKFPTYRRRFRQVVKA 541 (567)
Q Consensus 496 d~~g~pp--~d~vrrAqLqai~RRLqGI~~-s~SR~PT~RRrf~~lvK~ 541 (567)
+++.-. .+.+.+. .+.+.+-|+-.+. +-.+.|.-..||-+++-.
T Consensus 155 -~~~~~~~~~~~v~~~-q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~ 201 (240)
T 3oll_A 155 -TATQDADSSRKLAHL-LNAVTDALVWVIAKSGISSQQQSMRLANLLML 201 (240)
T ss_dssp -CCC--CHHHHHHHHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred -cccchhhHHHHHHHH-HHHHHHHHHHHHhccCCCCcchhhHHHHHHHH
Confidence 111111 1122222 2334444443332 223467888899887753
No 8
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=90.85 E-value=0.47 Score=45.41 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWD 496 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd 496 (567)
.+|..--+|.+. .+++++.||..++...-....+-+.|-..+.-+-..++.++++++|=.||+-++|++.|...
T Consensus 129 ~il~~a~rs~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~g----- 202 (282)
T 1lbd_A 129 LIASFSHRSIAV-KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG----- 202 (282)
T ss_dssp HHHHHHHGGGGS-SSEEECTTSCEEEHHHHHHTTTHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTT-----
T ss_pred HHHHHHHhcccC-CCceEecCCcccccchhhhcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCC-----
Confidence 344444466664 57899999987654322122233344344445678899999999999999999999877533
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 497 NGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 497 ~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
+.....+++.| |.+.+-|+-.++ .++|.-..||-+++..|
T Consensus 203 ---Ls~~~~v~~lq-~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~L 242 (282)
T 1lbd_A 203 ---LSNPAEVEALR-EKVYASLEAYCK--HKYPEQPGRFAKLLLRL 242 (282)
T ss_dssp ---CSCHHHHHHHH-HHHHHHHHHHHH--HHSCCSTTTHHHHHTTH
T ss_pred ---CCCHHHHHHHH-HHHHHHHHHHHH--HhCCCchhHHHHHHHHH
Confidence 22444443333 222233444443 34666667787776544
No 9
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=90.74 E-value=0.86 Score=42.71 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhhc-CCCceeecCCceecccCCC--CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccc
Q 008404 416 YSFLQTLLYSIKA-GSGGLLLPDSVEITHLNRP--NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERM 492 (567)
Q Consensus 416 yslL~~LL~SaKa-nS~GlllsD~~EiT~~NrP--kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~ 492 (567)
..+|..--+|.+. +++.+++.||..++...-. .+.-++=+.+++.-+-..++.++++++|=.||+-++|++.|....
T Consensus 90 l~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL 169 (246)
T 1ymt_A 90 LLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFL 169 (246)
T ss_dssp HHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGS
T ss_pred HHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhcchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCccccc
Confidence 3455555677776 4778888999888642100 010011145667777889999999999999999999998775433
Q ss_pred ccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 493 EAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 493 ~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
. ..+.+.+.|= .+.+=|+-.++ .++|.-..||-+++..|
T Consensus 170 ~--------~~~~v~~lq~-~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 208 (246)
T 1ymt_A 170 N--------NHSLVKDAQE-KANAALLDYTL--SHYPHSGDKFQQLLLSL 208 (246)
T ss_dssp S--------CHHHHHHHHH-HHHHHHHHHHH--HHCTTSTTHHHHHHHHH
T ss_pred c--------cHHHHHHHHH-HHHHHHHHHHH--hcCCchhhHHHHHHHHh
Confidence 2 2333333321 12223333332 45777777888877644
No 10
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=90.14 E-value=0.72 Score=43.80 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhc---CCCc--------------eeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhH
Q 008404 416 YSFLQTLLYSIKA---GSGG--------------LLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRY 478 (567)
Q Consensus 416 yslL~~LL~SaKa---nS~G--------------lllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~y 478 (567)
..+|..--+|.+. +.++ +++.||..++...--...+-+++-..+.-+-.+++.++++++|=.|
T Consensus 87 l~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~l 166 (264)
T 1g2n_A 87 LLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVA 166 (264)
T ss_dssp HHHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555566665 3455 8999998766432111233444446777778899999999999999
Q ss_pred HHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 479 LEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 479 L~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
|+-++|++.|... +...+.+.+.|= .+.+=|+-.++ .++|.-..||-+++..|
T Consensus 167 LkAivL~npd~~g--------L~~~~~ve~lq~-~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 219 (264)
T 1g2n_A 167 LKAIILLNPDVKG--------LKNRQEVEVLRE-KMFLCLDEYCR--RSRSSEEGRFAALLLRL 219 (264)
T ss_dssp HHHHHHSCTTCTT--------CSCHHHHHHHHH-HHHHHHHHHHH--HHSTTCTTHHHHHHTHH
T ss_pred HHHHHHhCCCCCC--------CccHHHHHHHHH-HHHHHHHHHHH--HhCCCHhhHHHHHHHHH
Confidence 9999999877433 223333333321 11222222222 34566667887776544
No 11
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=90.06 E-value=0.75 Score=42.84 Aligned_cols=107 Identities=11% Similarity=0.160 Sum_probs=65.6
Q ss_pred HHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCC
Q 008404 423 LYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLP 502 (567)
Q Consensus 423 L~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp 502 (567)
-+|.. .++.+++.||..++...-.+..+-+ +.+.+.-+-.+++.++++++|=.||+-++|++.|... +..
T Consensus 96 ~~~~~-~~~~l~~~~g~~~~~~~~~~~g~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~g--------L~~ 165 (236)
T 1fcy_A 96 TRYTP-EQDTMTFSDGLTLNRTQMHNAGFGP-LTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMD--------LEE 165 (236)
T ss_dssp HTEET-TTTEEECTTCBEEEHHHHHHHTTGG-GHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTT--------CSC
T ss_pred HHhcc-CCCeEEeCCCceecHHHHHHcCcHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCC--------CCC
Confidence 34443 4578999999877542111111222 4566666778999999999999999999999876433 223
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 503 EDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 503 ~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
...+.+.| +.+.+=|+--++ .++|.-..||-+++..|
T Consensus 166 ~~~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 202 (236)
T 1fcy_A 166 PEKVDKLQ-EPLLEALRLYAR--RRRPSQPYMFPRMLMKI 202 (236)
T ss_dssp HHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHH--hhCCCchhHHHHHHHHh
Confidence 33343333 112222332332 35677778998887654
No 12
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=90.05 E-value=0.71 Score=43.44 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWD 496 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd 496 (567)
.+|..--+|... ++++++.+|..++....-...+.+ +++.+.-+-++++.++++++|=.||+-++|++.|.....
T Consensus 94 ~~L~~a~rs~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~--- 168 (244)
T 2e2r_A 94 LILGVVYRSLSF-EDELVYADDYIMDEDQSKLAGLLD-LNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIE--- 168 (244)
T ss_dssp HHHHHHHHTTTS-SSCEEEETTEEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCS---
T ss_pred HHHHHHHHhccc-CCeEEecCCEeecHHHhhhccHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc---
Confidence 344444466665 567899998765432111122334 457788888999999999999999999999987643322
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHH
Q 008404 497 NGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVK 540 (567)
Q Consensus 497 ~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK 540 (567)
..+.+.+.| +.+.+=|+-.++ .++|.-..||-+++-
T Consensus 169 -----~~~~v~~lq-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~ 204 (244)
T 2e2r_A 169 -----DVEAVQKLQ-DVLHEALQDYEA--GQHMEDPRRAGKMLM 204 (244)
T ss_dssp -----CHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHT
T ss_pred -----CHHHHHHHH-HHHHHHHHHHHH--hcCCCcccHHHHHHH
Confidence 333343333 223333333332 245666667777654
No 13
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=90.03 E-value=0.91 Score=43.61 Aligned_cols=102 Identities=13% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHH
Q 008404 429 GSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRA 508 (567)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrr 508 (567)
+.+.+++.||..++...-.+..+ .=+.+.+.-+-.+++.++++++|=.||+-++|++.|...+. ....+.+
T Consensus 125 ~~~~l~~~~g~~~~~~~~~~~g~-~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL~--------~~~~ve~ 195 (266)
T 3kmr_A 125 EQDTMTFSDGLTLNRTQMHNAGF-GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLE--------QPDRVDM 195 (266)
T ss_dssp TTTEEECTTSBEEEHHHHHHHTT-GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCS--------CHHHHHH
T ss_pred CCCeEEecCCcccchHHHhhcch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCC--------CHHHHHH
Confidence 45788999998775422111111 22356666677899999999999999999999987754322 3344444
Q ss_pred HHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 509 AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 509 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
.| +.+.+=|+--++ +++|.-..||-+++..|
T Consensus 196 lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 226 (266)
T 3kmr_A 196 LQ-EPLLEALKVYVR--KRRPSRPHMFPKMLMKI 226 (266)
T ss_dssp HH-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--hhCCCcccHHHHHHHHh
Confidence 43 223333333333 25677788998887543
No 14
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=89.67 E-value=0.86 Score=46.19 Aligned_cols=114 Identities=16% Similarity=0.289 Sum_probs=66.9
Q ss_pred HHHHHHHhhhcC-CCceeecCCceecccCCC--CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccc
Q 008404 418 FLQTLLYSIKAG-SGGLLLPDSVEITHLNRP--NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEA 494 (567)
Q Consensus 418 lL~~LL~SaKan-S~GlllsD~~EiT~~NrP--kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~ 494 (567)
+|..--+|.+.+ .+.+++.||.++...+-. ...-++=+.+.+.-+-+.++.++++++|=.||+-++|++.|...++
T Consensus 198 lL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs- 276 (352)
T 3tx7_B 198 ILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLE- 276 (352)
T ss_dssp HHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC-----
T ss_pred HHHHHHHHHhcCCCCeEEecCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCc-
Confidence 333334677765 477888999877542211 1111133456777788999999999999999999999998764433
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 495 WDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 495 wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
....+++.| +.+.+-|+--++ .++|.-..||-+++-.|
T Consensus 277 -------~~~~Ve~lQ-e~~~~aL~~y~~--~~~p~~~~RF~kLLllL 314 (352)
T 3tx7_B 277 -------NFQLVEGVQ-EQVNAALLDYTM--CNYPQQTEKFGQLLLRL 314 (352)
T ss_dssp ---------CHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHH
T ss_pred -------hHHHHHHHH-HHHHHHHHHHHH--HhCCCccHHHHHHHHHH
Confidence 222233332 122222332222 35677677888876544
No 15
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=89.64 E-value=1.3 Score=42.16 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcC-CCceeecCCceecccCCC-Cccc-hhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccc
Q 008404 416 YSFLQTLLYSIKAG-SGGLLLPDSVEITHLNRP-NNKL-LDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERM 492 (567)
Q Consensus 416 yslL~~LL~SaKan-S~GlllsD~~EiT~~NrP-kd~~-fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~ 492 (567)
..+|..--+|.+.+ ++.+++.||.+++...-. .... +.=+.+.+.-+-.+++.++++++|=.||+-++|++.|....
T Consensus 101 l~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL 180 (257)
T 3plz_A 101 LLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNL 180 (257)
T ss_dssp HHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSC
T ss_pred HHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCC
Confidence 34444455777766 678889999887643211 1111 01235667778899999999999999999999999765332
Q ss_pred ccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 493 EAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 493 ~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
. ....+.+.|= .+.+=|+--++ +++|.-..||-+++-.|
T Consensus 181 ~--------~~~~ve~lq~-~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 219 (257)
T 3plz_A 181 E--------NFQLVEGVQE-QVNAALLDYTM--CNYPQQTEKFGQLLLRL 219 (257)
T ss_dssp T--------THHHHHHHHH-HHHHHHHHHHH--HHCTTSTTHHHHHHTHH
T ss_pred c--------cHHHHHHHHH-HHHHHHHHHHH--HhCCCchhHHHHHHHHh
Confidence 2 3333333321 12222222222 35677677888776443
No 16
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=89.17 E-value=0.83 Score=47.84 Aligned_cols=103 Identities=17% Similarity=0.350 Sum_probs=65.9
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHH-HHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHH
Q 008404 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIM-VLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDAL 506 (567)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkd~~fDWff~Pll-viKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~v 506 (567)
...+++++.||..++..+--...+-+ +++.++ -+-+.++++++|++|=.||+-++|++.|..... ..+.+
T Consensus 324 ~~~~~~ll~~g~~i~~~~~~~~~~~~-~~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~--------~~~~V 394 (467)
T 3dzy_A 324 AVKDGILLATGLHVHRNSAHSAGVGA-IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLS--------NPAEV 394 (467)
T ss_dssp SSTTBCCCSSSCCCBTHHHHTTTCHH-HHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCS--------CHHHH
T ss_pred cCCCceEecCCceechhhhhhhcchH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC--------CHHHH
Confidence 36788999999877654322222323 233333 566789999999999999999999998765533 33334
Q ss_pred HHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 507 RAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 507 rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
.+-| |.+.+=|+-.++ .++|....||-+++..|
T Consensus 395 e~lQ-e~~~~aL~~Y~~--~~~p~~p~Rf~kLLl~L 427 (467)
T 3dzy_A 395 EALR-EKVYASLEAYCK--HKYPEQPGRFAKLLLRL 427 (467)
T ss_dssp HHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTHH
T ss_pred HHHH-HHHHHHHHHHHH--hcCCChHHHHHHHHHHH
Confidence 3222 222333444443 36788888999987644
No 17
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=89.08 E-value=0.82 Score=43.93 Aligned_cols=120 Identities=13% Similarity=0.221 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccc
Q 008404 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEA 494 (567)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~ 494 (567)
..+|..--+|.+. ++.+++.||..++..... ...+-+ +++++.-+-.+++.++++++|=.||+-++|++.|.....
T Consensus 104 l~iL~~a~rs~~~-~~~l~~~~g~~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs- 180 (271)
T 1l2j_A 104 VLMMGLMWRSIDH-PGKLIFAPDLVLDRDEGKCVEGILE-IFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLV- 180 (271)
T ss_dssp HHHHHHHHHTSSS-TTEECSSSSCCEETGGGGGSTTHHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----CC-
T ss_pred HHHHHHHHHhhcc-CCeeeecCCccccchhhhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCc-
Confidence 3444444566665 477888999866543211 122333 456777778999999999999999999999987754322
Q ss_pred ccCCCCCCh---hHHHHHHHHHHHHhhhhhhhhc-ccCchhhHhHHHHHHHH
Q 008404 495 WDNGGLLPE---DALRAAQIQGISRRMIGLIRSV-SKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 495 wd~~g~pp~---d~vrrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L 542 (567)
+.. +.. +.+.+. .+.+.+=|+-.+..- ...|.-..||-+++..|
T Consensus 181 --~~~-~~~~~~~~v~~~-q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~L 228 (271)
T 1l2j_A 181 --TAT-QDADSSRKLAHL-LNAVTDALVWVIAKSGISSQQQSMRLANLLMLL 228 (271)
T ss_dssp --CCG-GGHHHHHHHHHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred --cch-hhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 000 000 111111 122333333333221 12567778998887655
No 18
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=89.08 E-value=1.8 Score=41.44 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhcCCC-ceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC-Ccccccc
Q 008404 417 SFLQTLLYSIKAGSG-GLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS-TTERMEA 494 (567)
Q Consensus 417 slL~~LL~SaKanS~-GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~~ 494 (567)
.+|..--+|.+.+.+ -++..||..++...-....+.|+ ++++.-+-..++.++++++|=.||+-++|++. |..
T Consensus 88 ~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~---- 162 (261)
T 3mnp_A 88 MVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQ-CKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKE---- 162 (261)
T ss_dssp HHHHHHHHHHHHHTTSSEEEETTEEECHHHHTSTTTHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETT----
T ss_pred HHHHHHHHcccCCCCCEEEecCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcC----
Confidence 444444567666544 37788887665432222334553 56777788899999999999999999999987 432
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCch---hhHhHHHHHHHH
Q 008404 495 WDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPT---YRRRFRQVVKAL 542 (567)
Q Consensus 495 wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT---~RRrf~~lvK~L 542 (567)
|+-....+.+-| +.+.+=|+-.++ .+.|+ -..||-+++..|
T Consensus 163 ----gL~~~~~ve~lq-~~~~~aL~~y~~--~~~~~~~~~~~Rf~~LL~lL 206 (261)
T 3mnp_A 163 ----GLKSQELFDEIR-MTYIKELGKAIA--KRGGNSSQNWQRFYQLTKLL 206 (261)
T ss_dssp ----CCTTHHHHHHHH-HHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHH
T ss_pred ----CCccHHHHHHHH-HHHHHHHHHHHH--hhCCCCchhhhHHHHHHHHH
Confidence 222333333332 222223333332 45664 367887776544
No 19
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=88.54 E-value=1.2 Score=43.07 Aligned_cols=105 Identities=16% Similarity=0.265 Sum_probs=66.4
Q ss_pred hcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHH
Q 008404 427 KAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDAL 506 (567)
Q Consensus 427 KanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~v 506 (567)
..+++.+++.||..++...-.+..+-.-+.+.+.-+-..++.++++++|=.||+-++|++.|...+. ..+.+
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~--------~~~~v 214 (283)
T 3ipq_A 143 NPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQ--------DQLQV 214 (283)
T ss_dssp ETTTTEEEETTTEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTCS--------CHHHH
T ss_pred cCCCCeEEeCCCceecHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCCC--------cHHHH
Confidence 3456778888988775422111222235677888888999999999999999999999988754322 33334
Q ss_pred HHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 507 RAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 507 rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
.+.| +.+.+=|+=-++ .++|.-..||-+++..|
T Consensus 215 e~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 247 (283)
T 3ipq_A 215 ERLQ-HTYVEALHAYVS--IHHPHDRLMFPRMLMKL 247 (283)
T ss_dssp HHHH-HHHHHHHHHHHH--HHSTTCTTHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHH
Confidence 3333 222222222222 35677778888887644
No 20
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=87.40 E-value=3.9 Score=39.15 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAW 495 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~w 495 (567)
.+|..--+|.+.+ +.+++.+|..++...-. ...+-+ +++.+.-+-.+++.++++++|=.||+-++|++.|..... -
T Consensus 77 ~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs-~ 153 (268)
T 1yye_A 77 LMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILE-IFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLV-T 153 (268)
T ss_dssp HHHHHHHHHTTST-TEEEEETTEEEEGGGGGGSTTHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC------
T ss_pred HHHHHHHHhccCC-CceEecCCcccChhhHhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcc-c
Confidence 4444445667654 77888999766543211 122334 346777778899999999999999999999987754432 0
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhhhhhhhc-ccCchhhHhHHHHHHHH
Q 008404 496 DNGGLLPEDALRAAQIQGISRRMIGLIRSV-SKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 496 d~~g~pp~d~vrrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L 542 (567)
...+....+.+.+.| +.+.+-|+-.++.- ...|.-..||-+++..|
T Consensus 154 ~~~~~~~~~~v~~~q-~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~L 200 (268)
T 1yye_A 154 ATQDADSSRKLAHLL-NAVTDALVWVIAKSGISSQQQSMRLANLLMLL 200 (268)
T ss_dssp -----CCHHHHHHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Confidence 001111223333322 33444444444321 12566777888877654
No 21
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=87.29 E-value=1.5 Score=42.07 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=67.2
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHH
Q 008404 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALR 507 (567)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vr 507 (567)
.+.+.+++.+|.-++... ....+-| +++++.-+-+++++++++++|=.||+-+||++ |.. |+-....+.
T Consensus 108 ~~~~~l~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfs-d~~--------gL~~~~~Ve 176 (257)
T 3v3e_B 108 PGEGKLIFCSGLVLHRLQ-CARGFGD-WIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRH--------GLQEPRRVE 176 (257)
T ss_dssp GGGTEEECTTSBEEEHHH-HHHHHTT-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSS-CCT--------TCSSHHHHH
T ss_pred CCCCeeEeCCCccccHHH-HHhhhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCC--------CCCCHHHHH
Confidence 345668888887766432 1222233 46788888889999999999999999999995 332 333455555
Q ss_pred HHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 508 AAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 508 rAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
+-|=+ +..=|+--+++....|.-..||-+++-.|
T Consensus 177 ~lqe~-~~~aL~~yi~~~~~~p~~~~rf~kLL~~L 210 (257)
T 3v3e_B 177 ELQNR-IASCLKEHVAAVAGEPQPASCLSRLLGKL 210 (257)
T ss_dssp HHHHH-HHHHHHHHHHHHHCSCC-CHHHHHHHTHH
T ss_pred HHHHH-HHHHHHHHHHHhcCCCcHhhHHHHHHHHH
Confidence 54422 23334445566667888888998876443
No 22
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=87.12 E-value=1.8 Score=41.39 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=64.0
Q ss_pred CCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHH
Q 008404 429 GSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRA 508 (567)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrr 508 (567)
+++.+++.||..++...-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++.|...+ -....+.+
T Consensus 127 ~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL--------~~~~~ve~ 197 (267)
T 3ilz_A 127 ESDTLTLSGEMAVKREQLKNGGLGV-VSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGL--------LXVDKIEK 197 (267)
T ss_dssp TTTBEEETTTEEECHHHHHHTTTTH-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSC--------SCHHHHHH
T ss_pred CCCEEEecCCeeecHHHHhccCHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--------chHHHHHH
Confidence 4567888999876642211111112 45666677789999999999999999999999875332 23344444
Q ss_pred HHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 509 AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 509 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
.| +.+.+=|+-.++ .++|.-..||-+++..|
T Consensus 198 lq-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 228 (267)
T 3ilz_A 198 SQ-EAYLLAFEHYVN--HRKHNIPHFWPKLLMKV 228 (267)
T ss_dssp HH-HHHHHHHHHHHH--HHTCSSTTHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHh
Confidence 43 222233333333 35677778999887643
No 23
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=86.99 E-value=1.5 Score=39.88 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=65.8
Q ss_pred hcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHH
Q 008404 427 KAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDAL 506 (567)
Q Consensus 427 KanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~v 506 (567)
..+.+.+++.||..++...-....+-+ +++++.-+-++++.++++++|=.||+-++|++.|... +...+.+
T Consensus 75 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~g--------L~~~~~v 145 (199)
T 3cqv_A 75 DAKERTVTFLSGKKYSVDDLHSMGAGD-LLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSG--------IENVNSV 145 (199)
T ss_dssp ETTTTEEECTTSCEEEHHHHHHTTCCH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTT--------CSCHHHH
T ss_pred CCCCCeEEecCCCeecHHHHHhcCcHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--------CcCHHHH
Confidence 345667888899877643211111222 4577778889999999999999999999999876433 2233333
Q ss_pred HHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHH
Q 008404 507 RAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALV 543 (567)
Q Consensus 507 rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 543 (567)
.+-| +.+.+=|+--++ +++|.-..||-+++-.|-
T Consensus 146 ~~~q-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L~ 179 (199)
T 3cqv_A 146 EALQ-ETLIRALRTLIM--KNHPNEASIFTKLLLKLP 179 (199)
T ss_dssp HHHH-HHHHHHHHHHHH--HHCTTCTHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH--HHCCChhhHHHHHHHHHH
Confidence 3333 122222333333 356777789988876553
No 24
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=86.12 E-value=4.3 Score=38.50 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWD 496 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd 496 (567)
.+|..--+|... .+.+++.||..++..+ ....+ .-+++++.-+-.+++.++++++|=.||+-++|++ | +
T Consensus 120 ~~L~~a~~s~~~-~~~l~~~~g~~~~~~~-~~~~~-~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~-~--~----- 188 (271)
T 1ovl_A 120 FVLRLAYRSNPV-EGKLIFCNGVVLHRLQ-CVRGF-GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVT-E--R----- 188 (271)
T ss_dssp HHHHHHHHSBTT-TTEEECTTSBEEEHHH-HTTTT-TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSS-C--C-----
T ss_pred HHHHHHHHhcCC-CCeEEeeCCeeecHHH-HHhhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--C-----
Confidence 344444455554 4689999998776532 12222 3356788888899999999999999999999996 3 2
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 497 NGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 497 ~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
.|+...+.+.+.| +.+.+=|+--++.-...|.-..||-+++..|
T Consensus 189 -~gL~~~~~v~~lq-~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L 232 (271)
T 1ovl_A 189 -HGLKEPKRVEELQ-NKIVNCLKDHVTFNNGGLNRPNYLSKLLGKL 232 (271)
T ss_dssp -TTCSCHHHHHHHH-HHHHHHHHHHHHGGGTTTTSTTHHHHHHHHH
T ss_pred -CCCCcHHHHHHHH-HHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 2333333444333 2233334444443334566777888887544
No 25
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=85.78 E-value=1.3 Score=43.31 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 008404 418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (567)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (567)
+|..--+|.+ .++.+++.||..++...-....+-+ +++++.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 118 lL~~a~~s~~-~~~~l~~~~g~~~~~~~~~~~g~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 188 (303)
T 1xdk_B 118 ILRICTRYTP-EQDTMTFSDGLTLNRTQMHNAGFGP-LTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ 188 (303)
T ss_dssp HHHHHTTEET-TTTEEECTTCBEEEHHHHHHTTTGG-GHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSS
T ss_pred HHHHHHHhcc-cCCeEEecCCceecHHHHhhcCcHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3333344554 3578999999877643211112222 456777788999999999999999999999987643
No 26
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=85.20 E-value=2.9 Score=41.08 Aligned_cols=72 Identities=14% Similarity=0.288 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCC-CCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 008404 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNR-PNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (567)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~Nr-Pkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (567)
..+|..--+|.+.+ +.+++.||..++.... -...+-+ +++.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 89 l~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~ 161 (298)
T 2ocf_A 89 ILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVE-IFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGV 161 (298)
T ss_dssp HHHHHHHHHTTTST-TEEEEETTEEEEHHHHTTSTTHHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhcccC-CceeecCCceechhhhhhhhhHHH-HHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCc
Confidence 34555555666654 7889999987664321 1122334 35667667789999999999999999999998775
No 27
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=84.42 E-value=4.2 Score=38.65 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=54.7
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHH
Q 008404 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALR 507 (567)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vr 507 (567)
.+.+.+++.||..++..+-....+-+ +++++.-+-+.++.++++++|=.||+-++|++.|...+. ....+.
T Consensus 121 ~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~--------~~~~ve 191 (245)
T 3n00_A 121 VKDQTVMFLSRTTYSLQELGAMGMGD-LLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGME--------NSASVE 191 (245)
T ss_dssp SCC--------------CCGGGTTHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCS--------SHHHHH
T ss_pred CCCCeEEecCCCeecHHHHhhccHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--------cHHHHH
Confidence 44566777888877543322222333 457777888899999999999999999999997653322 333333
Q ss_pred HHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 508 AAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 508 rAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
+.|= .+.+=|+=-++ .++|.-..||-+++-.|
T Consensus 192 ~lq~-~~~~aL~~y~~--~~~p~~~~RF~~LLl~L 223 (245)
T 3n00_A 192 QLQE-TLLRALRALVL--KNRPLETSRFTKLLLKL 223 (245)
T ss_dssp HHHH-HHHHHHHHHHH--HHCTTCTTHHHHHHTHH
T ss_pred HHHH-HHHHHHHHHHH--HhCCCHHHHHHHHHHHh
Confidence 3221 12222322232 35777778999887544
No 28
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=83.49 E-value=6.6 Score=37.37 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcCCCc-eeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC-Ccccccc
Q 008404 417 SFLQTLLYSIKAGSGG-LLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS-TTERMEA 494 (567)
Q Consensus 417 slL~~LL~SaKanS~G-lllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~~ 494 (567)
.+|..--+|.+.+.+. +++.+|.-++..+-....+.+ +.+.+.-+-..++.++++++|=.||+-++|++. |..
T Consensus 87 ~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~---- 161 (261)
T 1sqn_A 87 MVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYS-LCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLE---- 161 (261)
T ss_dssp HHHHHHHHHHHHHTTSSEEEETTEEECGGGCCSHHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTT----
T ss_pred HHHHHHHHhhhcCCCCeEEeCCCcccchHhhhhhhHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc----
Confidence 4445555666654333 667888766543322233445 346677778899999999999999999999987 322
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhhhhhhhhc-ccCchhhHhHHHHHHHH
Q 008404 495 WDNGGLLPEDALRAAQIQGISRRMIGLIRSV-SKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 495 wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L 542 (567)
|+-....+.+-| +.+.+-|+--++.- ...|.-..||-+++..|
T Consensus 162 ----gL~~~~~ve~lq-~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L 205 (261)
T 1sqn_A 162 ----GLRSQTQFEEMR-SSYIRELIKAIGLRQKGVVSSSQRFYQLTKLL 205 (261)
T ss_dssp ----CCTTHHHHHHHH-HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred ----ccccHHHHHHHH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHh
Confidence 232333333222 12223333333321 13456667777766544
No 29
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=82.73 E-value=5.5 Score=37.11 Aligned_cols=111 Identities=18% Similarity=0.320 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHH---HHHHHhccCChhHHhHHHHhhhcCCCccccc
Q 008404 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVL---KEQISVLKLTEPEVRYLEKVVLFGSTTERME 493 (567)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~Pllvi---KeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~ 493 (567)
.+|..--+|.+.+..-++..||......+ .+++.. |++++-.+ -++++.++++++|=.||+-++|++.|.....
T Consensus 83 ~~L~~a~~s~~~~~~~~l~~~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~ 159 (244)
T 3cjw_A 83 FVLNAAQCSMPLHVAPLLAAAGLHASPMS--ADRVVA-FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLS 159 (244)
T ss_dssp HHHHHHHHTCCCSCCC-------------------CC-CSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCS
T ss_pred HHHHHHHHhccccccccccccccccCccc--hhhhHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 34444456666666556666665432111 123222 22333333 4578999999999999999999987753322
Q ss_pred cccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHH
Q 008404 494 AWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKA 541 (567)
Q Consensus 494 ~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~ 541 (567)
....+.+.| +.+.+=|+-.++ .++|.-..||-+++..
T Consensus 160 --------~~~~ve~lq-~~~~~aL~~y~~--~~~~~~~~Rf~~LLl~ 196 (244)
T 3cjw_A 160 --------DVAHVESLQ-EKSQCALEEYVR--SQYPNQPTRFGKLLLR 196 (244)
T ss_dssp --------CHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTT
T ss_pred --------CHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHH
Confidence 333444333 222333333333 3567777788887743
No 30
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=82.05 E-value=4.2 Score=37.96 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=53.7
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRR 534 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRr 534 (567)
+.+.+.-+-.+++.++++++|=.||+-++|++.|... +.....+.+.| +.+.+=|+-.++.-.+.|.-+.|
T Consensus 136 ~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~g--------L~~~~~v~~lq-~~~~~aL~~y~~~~~~~~~~~~r 206 (246)
T 1xvp_B 136 FLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPG--------VTQRDEIDQLQ-EEMALTLQSYIKGQQRRPRDRFL 206 (246)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTT--------CSCHHHHHHHH-HHHHHHHHHHHHTCSSCCSCSSH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCC--------CCCHHHHHHHH-HHHHHHHHHHHHhhCCCCCchhH
Confidence 4456666778899999999999999999999876433 22333343333 22333444455544567888889
Q ss_pred HHHHHHHH
Q 008404 535 FRQVVKAL 542 (567)
Q Consensus 535 f~~lvK~L 542 (567)
|-+++..|
T Consensus 207 f~~LL~~L 214 (246)
T 1xvp_B 207 YAKLLGLL 214 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 31
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=81.00 E-value=5.4 Score=38.08 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=62.6
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHH
Q 008404 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALR 507 (567)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vr 507 (567)
..++.+++.||..++...-....+-+ +.+.+.-+-.+++.++++++|=.||+-++|++ |.. |+.....+.
T Consensus 124 ~~~~~l~~~~g~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~--------gL~~~~~v~ 193 (266)
T 2r40_D 124 AATDSVLFANNQAYTRDNYRKAGMAY-VIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-DRP--------GLEQPLLVE 193 (266)
T ss_dssp TTTTEEECTTSCEECHHHHHHTTCHH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-CCT--------TCSCHHHHH
T ss_pred CCCCeEEecCCceecHHHHhhcCHHH-HHHHHHHHHHHHhcccCCHHHHHHHhhheeec-CCC--------CCcCHHHHH
Confidence 45678999999887532111112223 46777777789999999999999999999998 432 222333333
Q ss_pred HHHHHHHHHhhhhhhhhcccC---chhhHhHHHHHHHH
Q 008404 508 AAQIQGISRRMIGLIRSVSKF---PTYRRRFRQVVKAL 542 (567)
Q Consensus 508 rAqLqai~RRLqGI~~s~SR~---PT~RRrf~~lvK~L 542 (567)
+.| +.+.+=|+--++ .++ |.-..||-+++..|
T Consensus 194 ~lq-~~~~~aL~~y~~--~~~~~~~~~~~Rf~~LL~~L 228 (266)
T 2r40_D 194 EIQ-RYYLNTLRVYIL--NQNSASPRCAVIFGKILGIL 228 (266)
T ss_dssp HHH-HHHHHHHHHHHH--HHTTTCTTHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHH--HhCCCCCchhhHHHHHHHHH
Confidence 322 122222332232 234 77888998887644
No 32
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=80.86 E-value=4.8 Score=38.52 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHHHHhhhcCCC-ceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcccccccc
Q 008404 418 FLQTLLYSIKAGSG-GLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWD 496 (567)
Q Consensus 418 lL~~LL~SaKanS~-GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd 496 (567)
+|..--||...+.+ -++..||..++..+-....+.+++ +.+.-+-.+++.++++++|=.||+-++|++.++.
T Consensus 96 iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~------ 168 (269)
T 1t7r_A 96 VFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQC-VRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPV------ 168 (269)
T ss_dssp HHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHTSEEET------
T ss_pred HHHHHHHhcccCCCCeEEeCCCceecHHhhhhhhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc------
Confidence 33333356655433 466778876554221123344543 6677777899999999999999999999986311
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhhhhhhc-ccCchhhHhHHHHHHHH
Q 008404 497 NGGLLPEDALRAAQIQGISRRMIGLIRSV-SKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 497 ~~g~pp~d~vrrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L 542 (567)
.|+-..+.+.+.| +.+.+-|+-.++.- ...|.-..||-+++..|
T Consensus 169 -~gL~~~~~ve~lq-~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L 213 (269)
T 1t7r_A 169 -DGLKNQKFFDELR-MNYIKELDRIIACKRKNPTSCSRRFYQLTKLL 213 (269)
T ss_dssp -TCCTTHHHHHHHH-HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 1222333333322 12223333333221 12355567887766543
No 33
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=80.20 E-value=8.7 Score=36.01 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHH
Q 008404 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALR 507 (567)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vr 507 (567)
..++.+++ ||..++..--....+-+ +.+++.-+-.+++.++++++|=.||+-++|++.|... +...+.+.
T Consensus 106 ~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~g--------L~~~~~v~ 175 (244)
T 1nq7_A 106 PLNNTVLF-EGKYGGMQMFKALGSDD-LVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW--------LLEPRKVQ 175 (244)
T ss_dssp TTTTEEEE-TTEEEEGGGGGGGSCHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTT--------CSCHHHHH
T ss_pred CCCCEEeE-CCEEecHHHHhhcChHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC--------CCCHHHHH
Confidence 35566777 88766532111112233 4567777788999999999999999999999877433 22333333
Q ss_pred HHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 508 AAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 508 rAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
+.| +.+.+=|+-.++ .++|.-- ||-+++..|
T Consensus 176 ~lq-~~~~~aL~~y~~--~~~~~~~-Rf~~LL~~L 206 (244)
T 1nq7_A 176 KLQ-EKIYFALQHVIQ--KNHLDDE-TLAKLIAKI 206 (244)
T ss_dssp HHH-HHHHHHHHHHHH--HHCSCTT-HHHHHHHTH
T ss_pred HHH-HHHHHHHHHHHH--HhCCCcc-HHHHHHHHH
Confidence 322 222233333333 3456544 887776544
No 34
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=78.64 E-value=5.6 Score=38.39 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=54.4
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRR 534 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRr 534 (567)
+.+.+.-+-++++.++++++|=.||+-++|++.|....+ ..+.+.+-| +.+.+=|+-.++ .++|.-..|
T Consensus 155 ~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~--------~~~~ve~lq-~~~~~aL~~y~~--~~~p~~~~R 223 (268)
T 3f5c_B 155 AVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQ--------CVKYIEGLQ-WRTQQILTEHIR--MMQREYQIR 223 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCS--------CHHHHHHHH-HHHHHHHHHHHH--HHSSCSSHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCc--------hHHHHHHHH-HHHHHHHHHHHH--HHCCChHHH
Confidence 346777888999999999999999999999997654332 444454433 233333443343 367887899
Q ss_pred HHHHHHHHH
Q 008404 535 FRQVVKALV 543 (567)
Q Consensus 535 f~~lvK~L~ 543 (567)
|-+++..|-
T Consensus 224 f~~LL~~Lp 232 (268)
T 3f5c_B 224 SAELNSALF 232 (268)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999886654
No 35
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=77.48 E-value=8 Score=36.20 Aligned_cols=72 Identities=14% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 008404 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (567)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (567)
..+|..--+|.+.+ +.+++.||..++..... .+.+-+ +++.+.-+-..++.++++++|=.||+-++|++.|.
T Consensus 80 l~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~ 152 (248)
T 1xpc_A 80 ILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVE-IFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGV 152 (248)
T ss_dssp HHHHHHHHHHTTST-TEEEEETTEEEEHHHHTTSTTHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccc-CceeecCCceeCccchhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCcc
Confidence 45556666777654 78899999766543211 122333 34566667789999999999999999999998775
No 36
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=77.41 E-value=8.8 Score=36.08 Aligned_cols=103 Identities=11% Similarity=0.183 Sum_probs=62.4
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHH
Q 008404 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALR 507 (567)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vr 507 (567)
.+++.+++.||..++...-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++ | | .|+...+.+.
T Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~-d--~------~gL~~~~~v~ 177 (248)
T 2nxx_E 108 VQTDSILFVNNQPYSRDSYNLAGMGE-TIEDLLHFCRTMYSMRVDNAEYALLTAIVIFS-E--R------PALIEGWKVE 177 (248)
T ss_dssp TTTTEEECTTSCEECHHHHHHTTCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-C--C------SSCTTHHHHH
T ss_pred CCCCeEEecCCceecHHHHHhcchHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-C--C------CCCCCHHHHH
Confidence 46778999999877532111112222 45677777889999999999999999999985 3 2 1333333333
Q ss_pred HHHHHHHHHhhhhhhhhcccC-chhhHhHHHHHHHHH
Q 008404 508 AAQIQGISRRMIGLIRSVSKF-PTYRRRFRQVVKALV 543 (567)
Q Consensus 508 rAqLqai~RRLqGI~~s~SR~-PT~RRrf~~lvK~L~ 543 (567)
+.| +.+.+=|+--++ +++ |.-..||-+++..|-
T Consensus 178 ~lq-~~~~~aL~~y~~--~~~~~~~~~Rf~~LL~~L~ 211 (248)
T 2nxx_E 178 KIQ-EIYLEALRAYVD--NRRKPKPGTIFAKLLSVLT 211 (248)
T ss_dssp HHH-HHHHHHHHHHHH--HSCCSSHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHH--HhCCCchhhHHHHHHHHHH
Confidence 332 122223333333 234 557789988876543
No 37
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=76.40 E-value=10 Score=36.57 Aligned_cols=104 Identities=13% Similarity=0.267 Sum_probs=62.9
Q ss_pred cCCCceeecCCceecccCC---CCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChh
Q 008404 428 AGSGGLLLPDSVEITHLNR---PNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPED 504 (567)
Q Consensus 428 anS~GlllsD~~EiT~~Nr---Pkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d 504 (567)
.+.+++++.+|......+. ..+.+-+ +.+++.-+-..++.++++++|=.||+-++|++.|... +-..+
T Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~g--------L~~~~ 197 (269)
T 3u9q_A 127 MNKDGVLISEGQGFMTREFLKSLRKPFGD-FMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPG--------LLNVK 197 (269)
T ss_dssp EETTEEEETTTTEEEEHHHHHHSCTTGGG-SSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTT--------CSCHH
T ss_pred cCCCCeEEeCCCccccHHHHHHhhhhHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC--------CccHH
Confidence 3557888888765321111 1122223 3567777888999999999999999999999877433 22333
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHH
Q 008404 505 ALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALV 543 (567)
Q Consensus 505 ~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 543 (567)
.+.+-|=+ +.+=|+=.++ .++|.-..||-+++..|-
T Consensus 198 ~Ve~lqe~-~~~aL~~y~~--~~~p~~~~Rf~kLL~~Lp 233 (269)
T 3u9q_A 198 PIEDIQDN-LLQALELQLK--LNHPESSQLFAKLLQKMT 233 (269)
T ss_dssp HHHHHHHH-HHHHHHHHHH--HHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH--HhCCChhhHHHHHHHHhH
Confidence 33332211 1222322222 356888889998876553
No 38
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=76.19 E-value=11 Score=36.04 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcC-CCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC
Q 008404 418 FLQTLLYSIKAG-SGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS 487 (567)
Q Consensus 418 lL~~LL~SaKan-S~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~ 487 (567)
+|..--+|.+.+ ++.++..||..++...--...+.| +.+++.-+-+.+++++++++|=.||+-++|++.
T Consensus 87 ~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp 156 (260)
T 3vhv_A 87 SFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYE-LCQGMHQISLQFVRLQLTFEEYTIMKVLLLLST 156 (260)
T ss_dssp HHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhhccCCCCeEEecCCccccHHHhhcccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 444444666653 457888898766532211112333 356677778899999999999999999999987
No 39
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=75.88 E-value=6.4 Score=38.22 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=39.7
Q ss_pred CCCceeec-CCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 008404 429 GSGGLLLP-DSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (567)
Q Consensus 429 nS~Gllls-D~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (567)
.++.++.. ||..++...-.+..+-+=+.+++.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~ 177 (292)
T 2o4j_A 116 DDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDR 177 (292)
T ss_dssp TTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTS
T ss_pred CCCeEEecCCCeEEcHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 34445555 36555432111112221245666677789999999999999999999998774
No 40
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=75.52 E-value=7.4 Score=38.18 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=62.6
Q ss_pred HHHHHHHhhhcC-CCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC-Cccccccc
Q 008404 418 FLQTLLYSIKAG-SGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS-TTERMEAW 495 (567)
Q Consensus 418 lL~~LL~SaKan-S~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~~w 495 (567)
+|..--+|.+.+ ++.+++.||..++...-....+.| +.+.+.-+-+.+++++++++|=.||+-++|++. |..
T Consensus 121 lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~----- 194 (294)
T 3vhu_A 121 SFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYE-LCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKD----- 194 (294)
T ss_dssp HHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETT-----
T ss_pred HHHHHHHhhhcCCCCeEEeCCCccccHHHhhcccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-----
Confidence 444444666653 457888898776532111112233 345666677889999999999999999999987 332
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchh---hHhHHHHHHHH
Q 008404 496 DNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTY---RRRFRQVVKAL 542 (567)
Q Consensus 496 d~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~---RRrf~~lvK~L 542 (567)
|+-....+.+-| +.+.+=|+=.++. +.|.- ..||-+++..|
T Consensus 195 ---gL~~~~~Ve~lQ-e~~~~aL~~y~~~--~~~~~~~~~~RF~~LL~lL 238 (294)
T 3vhu_A 195 ---GLKSQAAFEEMR-TNYIKELRKMVTK--CPNNSGQSWQRFYQLTKLL 238 (294)
T ss_dssp ---CCTTHHHHHHHH-HHHHHHHHHHHC--------CHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHH-HHHHHHHHHHHHh--cCCCCccHhHHHHHHHHHH
Confidence 222333344333 2222333333332 23433 56787776543
No 41
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=74.80 E-value=8.7 Score=37.98 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHH
Q 008404 429 GSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRA 508 (567)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrr 508 (567)
+++.+++.||..++...-....+- -+++.+.-+-..++.++++++|=.||+-++|++ |. .|+...+.+.+
T Consensus 173 ~~~~l~~~~g~~~~~~~~~~~g~~-~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~-d~--------~gL~~~~~Ve~ 242 (310)
T 1z5x_E 173 ETDSILFATNQPYTRESYTVAGMG-DTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS-ER--------PSLSEGWKVEK 242 (310)
T ss_dssp TTTEEECTTSCEECHHHHHHTTTH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-CC--------TTCTTHHHHHH
T ss_pred CCCeEEeCCCccccHHHHHhcchh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CC--------CCCccHHHHHH
Confidence 677899999987653211111222 345667667789999999999999999999985 32 23333333333
Q ss_pred HHHHHHHHhhhhhhhhcccC-chhhHhHHHHHHHHH
Q 008404 509 AQIQGISRRMIGLIRSVSKF-PTYRRRFRQVVKALV 543 (567)
Q Consensus 509 AqLqai~RRLqGI~~s~SR~-PT~RRrf~~lvK~L~ 543 (567)
.| +.+.+=|+-.++ .++ |.-..||-+++..|-
T Consensus 243 lq-e~~~~aL~~y~~--~~~~~~~~~RF~kLLl~Lp 275 (310)
T 1z5x_E 243 IQ-EIYIEALKAYVE--NRRKPYATTIFAKLLSVLT 275 (310)
T ss_dssp HH-HHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHH
Confidence 32 222233333333 233 677889998886554
No 42
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=73.56 E-value=9.2 Score=35.81 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=49.5
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCc--hhh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFP--TYR 532 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~P--T~R 532 (567)
+.+++.-+-..++.++++++|=.||+-++|++.|... +...+.+.+.| +.+.+=|+-.++ .++| .-.
T Consensus 140 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~g--------L~~~~~v~~lq-~~~~~aL~~y~~--~~~~~~~~~ 208 (254)
T 3b0t_A 140 LIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPG--------VQDAALIEAIQ-DRLSNTLQTYIR--CRHPPPGSH 208 (254)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTT--------CSCHHHHHHHH-HHHHHHHHHHHH--HHCCTTTTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--------CcCHHHHHHHH-HHHHHHHHHHHH--HhCCCCCch
Confidence 4466666778999999999999999999999877433 22333333322 222223333332 3566 677
Q ss_pred HhHHHHHHHH
Q 008404 533 RRFRQVVKAL 542 (567)
Q Consensus 533 Rrf~~lvK~L 542 (567)
.||-+++..|
T Consensus 209 ~Rf~~LL~~L 218 (254)
T 3b0t_A 209 LLYAKMIQKL 218 (254)
T ss_dssp THHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 8898887644
No 43
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=72.36 E-value=7 Score=37.00 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 008404 418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (567)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~ 486 (567)
+|..--+|. .+++++++.||..++... ....+-+ +++.+.-+-+++++++++++|=.||+-++|++
T Consensus 94 lL~~a~rs~-~~~~~l~~~~g~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn 159 (244)
T 1pdu_A 94 VLRLAYRAR-IDDTKLIFCNGTVLHRTQ-CLRSFGE-WLNDIMEFSRSLHNLEIDISAFACLCALTLIT 159 (244)
T ss_dssp HHHHHHHCC-SSCSEEECTTSBEEEHHH-HHHHHTT-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhc-cCCCceEeeCCeeecHHH-HHhHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 333334554 367789999998776421 1111223 45667777889999999999999999999995
No 44
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=71.51 E-value=11 Score=34.79 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=51.7
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRR 534 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRr 534 (567)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.. |+...+.+.+.| +.+.+=|+-.++ .++|.-..|
T Consensus 121 ~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~--------gL~~~~~v~~~q-~~~~~aL~~y~~--~~~~~~~~R 189 (232)
T 1osh_A 121 YITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQ--------YIKDREAVEKLQ-EPLLDVLQKLCK--IHQPENPQH 189 (232)
T ss_dssp THHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCT--------TCSCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--------CCCChHHHHHHH-HHHHHHHHHHHH--HHCCCchhH
Confidence 345666677899999999999999999999987643 232344444443 222222333333 457777789
Q ss_pred HHHHHHHHH
Q 008404 535 FRQVVKALV 543 (567)
Q Consensus 535 f~~lvK~L~ 543 (567)
|-+++..|-
T Consensus 190 f~~LL~~L~ 198 (232)
T 1osh_A 190 FACLLGRLT 198 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988886654
No 45
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=71.09 E-value=18 Score=37.21 Aligned_cols=104 Identities=13% Similarity=0.287 Sum_probs=63.9
Q ss_pred cCCCceeecCCcee-ccc--CCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChh
Q 008404 428 AGSGGLLLPDSVEI-THL--NRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPED 504 (567)
Q Consensus 428 anS~GlllsD~~Ei-T~~--NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d 504 (567)
.+.+|.++.+|..+ +.. ...+..+-| +.+++.-+-++++.++|+++|=.||+-+||++.|..- +-..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~g--------L~~~~ 346 (419)
T 3dzy_D 276 MNKDGVLISEGQGFMTREFLKSLRKPFGD-FMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPG--------LLNVK 346 (419)
T ss_dssp BCSSEEEEGGGTEEEEHHHHHSSSGGGSG-GGHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTT--------CSCHH
T ss_pred hcCCCceeecCcccccHHHHHhhhhhHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--------CCCHH
Confidence 35567777666432 211 111122333 4577888889999999999999999999999876533 33445
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHH
Q 008404 505 ALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALV 543 (567)
Q Consensus 505 ~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 543 (567)
.|.+-|=+ +.+=|+=-++ .++|.-..||-.++..|-
T Consensus 347 ~Ve~lQe~-~~~aL~~yi~--~~~p~~~~rf~kLLl~Lp 382 (419)
T 3dzy_D 347 PIEDIQDN-LLQALELQLK--LNHPESSQLFAKLLQKMT 382 (419)
T ss_dssp HHHHHHHH-HHHHHHHHHH--HHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH--HhCCChhhHHHHHHHHHH
Confidence 45444422 1122222222 366888889998876553
No 46
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=68.56 E-value=25 Score=33.96 Aligned_cols=77 Identities=10% Similarity=0.188 Sum_probs=51.0
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRR 534 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRr 534 (567)
+.+++.-+=.+++.++++++|=.||+-+||++.|..-.+ ..+.|.+.|=+ +..=|+=-++ +++|.-..|
T Consensus 159 ~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~gL~--------~~~~Ve~lqe~-~~~aL~~yi~--~~~p~~~~r 227 (273)
T 3vi8_A 159 IMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLL--------NVGHIEKMQEG-IVHVLRLHLQ--SNHPDDIFL 227 (273)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCS--------CHHHHHHHHHH-HHHHHHHHHH--HHCTTCTTH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc--------cHHHHHHHHHH-HHHHHHHHHH--HhCCChhhH
Confidence 356777777899999999999999999999987654333 34444433311 1222222222 357888889
Q ss_pred HHHHHHHH
Q 008404 535 FRQVVKAL 542 (567)
Q Consensus 535 f~~lvK~L 542 (567)
|-.++..|
T Consensus 228 F~kLL~~L 235 (273)
T 3vi8_A 228 FPKLLQKM 235 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887655
No 47
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=67.52 E-value=14 Score=36.17 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=50.7
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRR 534 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRr 534 (567)
+.+++.-+-.+++.++++++|=.||+-++|++.|..... ....+.+.| +.+.+=|+-.++ .++|.-..|
T Consensus 186 ~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~--------~~~~Ve~lq-e~~~~aL~~y~~--~~~p~~~~R 254 (302)
T 2hc4_A 186 LLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQ--------DHVRIEALQ-DRLCDVLQAYIR--IQHPGGRLL 254 (302)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCS--------CHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--------CHHHHHHHH-HHHHHHHHHHHH--HHCCChhHH
Confidence 456777777899999999999999999999987743322 333333332 122222333333 357877788
Q ss_pred HHHHHHHH
Q 008404 535 FRQVVKAL 542 (567)
Q Consensus 535 f~~lvK~L 542 (567)
|-+++..|
T Consensus 255 F~~LLl~L 262 (302)
T 2hc4_A 255 YAKMIQKL 262 (302)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887644
No 48
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=66.63 E-value=17 Score=34.52 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=43.7
Q ss_pred HHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHH
Q 008404 461 VLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVK 540 (567)
Q Consensus 461 viKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK 540 (567)
-+-..++.++++++|=.||+-++|++.|... +-....+++.|= .+.+=|+-.++ .++|.-..||-+++.
T Consensus 163 ~~~~~~~~L~ld~~E~~lLkAivL~npd~~g--------L~~~~~v~~lq~-~~~~aL~~y~~--~~~p~~~~Rf~~LL~ 231 (279)
T 1hg4_A 163 ELSVKMKRLNLDRRELSCLKAIILYNPDIRG--------IKSRAEIEMCRE-KVYACLDEHCR--LEHPGDDGRFAQLLL 231 (279)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHHSCTTSTT--------CSCHHHHHHHHH-HHHHHHHHHHH--HHCTTCTTHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC--------CCCHHHHHHHHH-HHHHHHHHHHH--HHCCChhhHHHHHHH
Confidence 4567899999999999999999999876433 223334433331 11222222222 245666677887765
Q ss_pred HH
Q 008404 541 AL 542 (567)
Q Consensus 541 ~L 542 (567)
.|
T Consensus 232 ~L 233 (279)
T 1hg4_A 232 RL 233 (279)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 49
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=63.56 E-value=27 Score=32.86 Aligned_cols=113 Identities=11% Similarity=0.189 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCCCceeecCCceec-ccCC---CC---ccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 008404 418 FLQTLLYSIKAGSGGLLLPDSVEIT-HLNR---PN---NKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (567)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT-~~Nr---Pk---d~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (567)
+|..--+|.+.+...++..++..+. ..++ +. ..+.|+. ..+.-+-++++.++++++|=.||+-++|++.|..
T Consensus 81 ~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 159 (249)
T 3p0u_A 81 TLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHI-WKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHP 159 (249)
T ss_dssp HHHHHHTTTSCCCCCCCCC-CC---CC---------CCCCHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCST
T ss_pred HHHHHHHcccCCcchhhcccccccccccccccchhhhhhhHHHHH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCC
Confidence 3444445655666666666554432 1111 11 1223322 2233456789999999999999999999998754
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 491 RMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 491 r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
..+ ..+.+.+.|= .+.+-|+--++ +++|.-..||-+++-.|
T Consensus 160 gL~--------~~~~v~~lq~-~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 200 (249)
T 3p0u_A 160 GLT--------STSQIEKFQE-AAQMELQDYVQ--ATYSEDTYRLARILVRL 200 (249)
T ss_dssp TCC--------CSHHHHHHHH-HHHHHHHHHHH--HHTTTCSTHHHHHHTTH
T ss_pred CCc--------cHHHHHHHHH-HHHHHHHHHHH--HhCCChHHHHHHHHHHH
Confidence 322 3333443332 12222332222 24566677887776544
No 50
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=60.02 E-value=68 Score=31.82 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=49.5
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCc--hhh
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFP--TYR 532 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~P--T~R 532 (567)
+.+++.-+-.+++.++++++|=.||+-++|++.|... +.....+.+.| +.+..=|+--++ .++| .-.
T Consensus 201 ~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~g--------L~~~~~Ve~lq-e~~~~aL~~y~~--~~~p~~~~~ 269 (316)
T 1nrl_A 201 LLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPG--------VLQHRVVDQLQ-EQFAITLKSYIE--CNRPQPAHR 269 (316)
T ss_dssp TTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTT--------CSCHHHHHHHH-HHHHHHHHHHHH--HHCCSGGGT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--------CccHHHHHHHH-HHHHHHHHHHHH--HhCCCCchh
Confidence 4567777788999999999999999999999876432 22333333322 112222222222 3567 677
Q ss_pred HhHHHHHHHH
Q 008404 533 RRFRQVVKAL 542 (567)
Q Consensus 533 Rrf~~lvK~L 542 (567)
.||-+++..|
T Consensus 270 ~RF~kLLl~L 279 (316)
T 1nrl_A 270 FLFLKIMAML 279 (316)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8898887644
No 51
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=60.00 E-value=35 Score=32.66 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=30.4
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (567)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 146 ~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~ 180 (270)
T 1n83_A 146 FISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADR 180 (270)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 45667777789999999999999999999998764
No 52
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=43.13 E-value=62 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=31.6
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 008404 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (567)
Q Consensus 455 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (567)
+.+++.-+-+.++.++++++|=.||+-++|++.|..
T Consensus 137 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~ 172 (248)
T 3l0l_A 137 LISSIFDFSHSLSALHFSEDEIALYTALVLINAHRP 172 (248)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Confidence 467777888999999999999999999999988753
No 53
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=40.70 E-value=74 Score=30.08 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred cCCceeccc--CCCCccchhhhchhHHHHHHHHHh-ccCChhHHhHHHHhhhcCCCccccccccCCCCCCh-h--HHHHH
Q 008404 436 PDSVEITHL--NRPNNKLLDWFFNPIMVLKEQISV-LKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPE-D--ALRAA 509 (567)
Q Consensus 436 sD~~EiT~~--NrPkd~~fDWff~PllviKeQIk~-~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~-d--~vrrA 509 (567)
.+|..++.. ...+..+-||+.+.+.-.=..+++ ++++++|=.||+-++|++.| + |+-.. | .+.+-
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLfsp~--~-------gL~~~~~~~~Ve~l 178 (243)
T 3up3_A 108 GESSEVSINMFDQLNADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPR--D-------SITDPEDRRIIARH 178 (243)
T ss_dssp CTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC--T-------TCCCHHHHHHHHHH
T ss_pred CCCccccHHHHhhhcccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC--C-------CCCCcchHHHHHHH
Confidence 455544421 122345667777777666677887 99999999999999999733 2 33232 1 22222
Q ss_pred HHHHHHHhhhhhhhhcccC-chhhHhHHHHHHHHH
Q 008404 510 QIQGISRRMIGLIRSVSKF-PTYRRRFRQVVKALV 543 (567)
Q Consensus 510 qLqai~RRLqGI~~s~SR~-PT~RRrf~~lvK~L~ 543 (567)
| +.+..=|+--+++ ++ |.-..||-++.-.|-
T Consensus 179 Q-e~~~~aL~~y~~~--~~~p~~~~rf~kLL~~Lp 210 (243)
T 3up3_A 179 H-EQFSALLNRYLES--LYGDDAHQLNEQLPTALR 210 (243)
T ss_dssp H-HHHHHHHHHHHHH--HHGGGHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH--hcCCChhHHHHHHHHHHH
Confidence 2 1122233333332 33 888899998876553
No 54
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=35.44 E-value=1e+02 Score=24.08 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=41.4
Q ss_pred hHhhhhHHHHHHHHHHHhhhhhhhhccCCCChhhHHHHHHhcCCCCcceEeeccchHHHHHHHHHhhhcCCCcee
Q 008404 360 IQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLL 434 (567)
Q Consensus 360 iqe~k~vqiwd~lfk~ce~~G~~Ll~~gvIt~~Diee~~~~k~~~~~k~i~vgLPayslL~~LL~SaKanS~Gll 434 (567)
+.+-...+-+..+|+.+..+| .|.|+.+|+..+++.-+.+ +.-.-++.+++.+-.|.+|-|
T Consensus 22 ~~~~~~~~~l~~~F~~~D~d~-----~G~I~~~El~~~l~~~g~~---------~~~~e~~~l~~~~D~d~dG~I 82 (94)
T 2kz2_A 22 MKDTDSEEEIREAFRVEDKDG-----NGYISAAELRHVMTNLGEK---------LTDEEVDEMIREADIDGDGQV 82 (94)
T ss_dssp HCCCSCHHHHHHHHHHHCTTC-----CSCBCHHHHHHHHHHHTCC---------CCHHHHHHHHHHHCTTCSSSB
T ss_pred hcCCCHHHHHHHHHHHHCCCC-----cCcCCHHHHHHHHHHhCCC---------CCHHHHHHHHHHhCCCCCCcE
Confidence 333445556678888887665 6999999999999875431 123456778887776766643
No 55
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=34.09 E-value=9.3 Score=26.13 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=11.5
Q ss_pred cccccccCCCcCCC
Q 008404 296 NDWLYLREGTILPK 309 (567)
Q Consensus 296 ND~LyLrEGScfPR 309 (567)
..+|+||.|+|+-.
T Consensus 5 shvldmrsgtclaa 18 (26)
T 2oqj_C 5 SHVLDMRSGTCLAA 18 (26)
T ss_pred hheeeccCCceEee
Confidence 35799999999864
No 56
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=31.92 E-value=60 Score=24.97 Aligned_cols=48 Identities=4% Similarity=-0.092 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCCC
Q 008404 501 LPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETS 553 (567)
Q Consensus 501 pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~~ 553 (567)
.+.+++.+.++|++.+.|. +.. =|+..+|....++++..+|.+.+-.+
T Consensus 42 ~~l~~it~~~i~~~~~~l~---~~~--s~~t~~~~~~~l~~~~~~a~~~~~i~ 89 (110)
T 2khq_A 42 KLLKDIKRTEYQKFLNEYG---LTH--SYETIRKLNSYIRNAFDDAIHEGYVI 89 (110)
T ss_dssp CBGGGCCHHHHHHHHHHHH---HHS--CHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHhhCCHHHHHHHHHHHH---HHh--hHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 3678899999999998885 222 36778889999999999998876543
No 57
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=27.72 E-value=37 Score=26.68 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCC
Q 008404 501 LPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPET 552 (567)
Q Consensus 501 pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 552 (567)
-|.+++++.++|++.+++.. + -|+.-+|...+++++..+|.+.+-.
T Consensus 42 ~~l~~It~~~i~~~~~~l~~--~----~~~t~~~~~~~l~~i~~~Av~~~~i 87 (106)
T 2khv_A 42 LSVQDVDTKLIMKVLDPIWE--Q----KPETASRLRGRIESVLDWATVRGYR 87 (106)
T ss_dssp SBSSSCCHHHHHHHHHHHHH--H----CHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHcCHHHHHHHHHHHHH--h----ChHHHHHHHHHHHHHHHHHHHcCCc
Confidence 36789999999999998752 1 1367788999999999999876543
No 58
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=26.29 E-value=1e+02 Score=22.67 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCC
Q 008404 502 PEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPET 552 (567)
Q Consensus 502 p~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 552 (567)
+.+++.+.+++.+...|..= -| |+..+|....++++..+|.+.+-.
T Consensus 42 ~l~~it~~~i~~~~~~l~~~---~~--~~t~~~~~~~l~~~~~~a~~~~~i 87 (103)
T 2oxo_A 42 PLEDITTKEIAAMLNGYIDE---GK--AASAKLIRSTLSDAFREAIAEGHI 87 (103)
T ss_dssp BGGGCCHHHHHHHHHHHHHT---TC--HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chhhCCHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67889999999999888531 12 888899999999999999887654
No 59
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=23.83 E-value=1.2e+02 Score=23.38 Aligned_cols=46 Identities=9% Similarity=0.131 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCC
Q 008404 502 PEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPET 552 (567)
Q Consensus 502 p~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 552 (567)
+.+++.+.++|++...|.. .. =|+..+|....++++..+|.+.+-.
T Consensus 40 ~l~~It~~~i~~~~~~l~~---~~--s~~t~~~~~~~lr~~~~~A~~~~~i 85 (111)
T 2kiw_A 40 PIQTIKKHDYQRFVDDISA---QY--SKNYVDSIVASTNMIFKYAYDTRLI 85 (111)
T ss_dssp CGGGCCHHHHHHHHHHHHT---TS--CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHcCHHHHHHHHHHHHh---hh--CHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 6778999999999998852 22 3677888999999999999876643
No 60
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.90 E-value=76 Score=24.92 Aligned_cols=51 Identities=22% Similarity=0.101 Sum_probs=37.7
Q ss_pred HHhccCChhHHhHHHHhhhcCCCccccccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404 466 ISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL 542 (567)
Q Consensus 466 Ik~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 542 (567)
++.-..|++|+.-|.+++-..|+ + | ..||+.|.|=|.. .-|.||.++++..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~--~---W----------------~~Ia~~~~~Rt~~-----q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR--R---W----------------TKISKLIGSRTVL-----QVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS--C---H----------------HHHHHHHSSSCHH-----HHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc--C---H----------------HHHHHHcCCCCHH-----HHHHHHHHHHHHH
Confidence 45567899999999999988887 2 6 4577778775544 4577888777665
No 61
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=22.27 E-value=48 Score=24.78 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhh
Q 008404 15 YVGFAFCLAFFLGALK 30 (567)
Q Consensus 15 y~~f~F~~l~~LG~iK 30 (567)
-|+.||++||+.|.+-
T Consensus 10 ~vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHccccC
Confidence 4788999999999863
No 62
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=22.10 E-value=91 Score=25.12 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCCC
Q 008404 502 PEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETS 553 (567)
Q Consensus 502 p~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~~ 553 (567)
+.+++++.++|.+.++|.. + .-|+..+|...+++.+..+|.+.+-.+
T Consensus 51 ~l~~It~~~i~~~l~~l~~--~---~~~~t~~~~~~~L~~if~~Av~~g~i~ 97 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEK--L---GYLEIAMRVKQYATAIMRYAVQQKMIR 97 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHT--T---TCHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred CHHHCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 6789999999999888742 1 137888999999999999998876543
No 63
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=21.73 E-value=99 Score=24.56 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCCC
Q 008404 502 PEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETS 553 (567)
Q Consensus 502 p~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~~ 553 (567)
+.+++.+.++|++..+|+.- .-|+..+|....++++..+|.+.+-.+
T Consensus 46 ~l~~It~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~~~~~Av~~~~i~ 92 (118)
T 2kj8_A 46 EIQDIEPMQLLEVIRRFEDR-----GAMERANKARRRCGEVFRYAIVTGRAK 92 (118)
T ss_dssp BTTSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred cHHHCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 67889999999999888531 136788899999999999998866543
No 64
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=21.65 E-value=1.2e+02 Score=23.37 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHHHHhhhhCCCCC
Q 008404 501 LPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETS 553 (567)
Q Consensus 501 pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~~ 553 (567)
.+.+++.+.++|++...|.. +.. =|+..+|....++++..+|.+.+-.+
T Consensus 48 ~~l~~It~~~i~~~~~~l~~--~~~--s~~t~~~~~~~l~~~~~~A~~~~~i~ 96 (117)
T 2kkp_A 48 IPLKKLQPADIQRLYASKLE--SGL--SPTRVRYIHVVLHEAMSQARESGLLL 96 (117)
T ss_dssp SCTTTCCHHHHHHHHHHHHH--TTC--CHHHHHHHHHHHHHHHHHHHTTTSCS
T ss_pred eEHHHCCHHHHHHHHHHHHH--cCC--CHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 36788999999999998852 111 25677888999999999998776543
No 65
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.09 E-value=1e+02 Score=25.41 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=12.9
Q ss_pred HHHHHHHHhccCChhHHhHHHHhhhc
Q 008404 460 MVLKEQISVLKLTEPEVRYLEKVVLF 485 (567)
Q Consensus 460 lviKeQIk~~~L~E~EE~yL~KlvL~ 485 (567)
|.++.++ .+||+.+++||+.+.-+
T Consensus 2 ~~~~~~~--~~lt~~~~~~L~~l~~l 25 (139)
T 2x4h_A 2 MRVDSQM--SNLSRREFSYLLTIKRY 25 (139)
T ss_dssp -----------CCHHHHHHHHHHHHH
T ss_pred cchHHHH--hhcCHHHHHHHHHHHHH
Confidence 3445555 47999999999987654
No 66
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=20.76 E-value=43 Score=25.41 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=16.5
Q ss_pred ceEEEEeeCccceeeceeEEe
Q 008404 126 KLFHCVVDGTWGTIKGSCTMV 146 (567)
Q Consensus 126 kf~HCf~DGTwsTI~GSCTVV 146 (567)
+..+|- ||+||.-.-.|..|
T Consensus 49 ~~~~C~-~g~Ws~~~P~C~~i 68 (68)
T 1srz_A 49 SRSVCS-QGQWSTPKPHCQVN 68 (68)
T ss_dssp CEEEEE-TTEESSCCCCEEEC
T ss_pred CcCEEC-CCEEeCCCCEeeEC
Confidence 568998 99999887788754
Done!