BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008405
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/276 (40%), Positives = 157/276 (56%), Gaps = 16/276 (5%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + +F + A+L+ S QL +E + V++ P+FRAE S T RHL EFW +E
Sbjct: 170 GATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLEL 229
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410
E A+ DL D M E V +M L+ ++E M ++ + N PF RI+
Sbjct: 230 EAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIE-MFRDDLTTLKN-----TEPPFPRIS 283
Query: 411 YTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR 470
Y VEWG DL ++ ER LTE +F +P VY YPK IKAFYM+
Sbjct: 284 YDEAIDILQSKG-------VNVEWGDDLGADEERVLTE-EFDRPFFVYGYPKHIKAFYMK 335
Query: 471 LN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFG 528
+ +D + V A D+L P+ GE+IGGSQRE+ YD + +RI + G+ + YEWYLDLRR+G
Sbjct: 336 EDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYG 395
Query: 529 TVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
+V HSGFGLG ER++ + +D+IR FPR P R
Sbjct: 396 SVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPAR 431
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANL-QVIVDKDVADLGQLVPTGTCVY 103
L G++VR+ GWV T GK F ++ + G A + + +V ++ + + + + V
Sbjct: 14 LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 104 VEGMLK---NPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT--KLTLEFLRDRIPFRPR 158
VEG++K P G E+ V+K+ + V +++PIP+ + + E L D R
Sbjct: 74 VEGIVKADERAPGGA----EVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIR 127
Query: 159 TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
T +A+ +++ L A +L K G+ + PI+ T EG +F++
Sbjct: 128 TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL 176
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 149/276 (53%), Gaps = 10/276 (3%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE
Sbjct: 169 GSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 228
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410
E F L D M E + +CD +D D E AK + IN PF R+
Sbjct: 229 ECPFITLDDLM---EKIEELVCD-TVDRLLADEE--AKKLLEH-INPKFQPPERPFLRME 281
Query: 411 YTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR 470
Y E + F N +G D+A ER++T+ KP+++ +P IKAFYM+
Sbjct: 282 YKDAIKWLQEHNVENE-FGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQ 339
Query: 471 LNDDLKTVA-AMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGT 529
+ T+ ++D+L+P VGE++GGS R ++D + +++ + +PY WYLD R +GT
Sbjct: 340 RDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGT 399
Query: 530 VKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 565
H G+GLG ER I + T ++IRDV +PR+ GR
Sbjct: 400 CPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRC 435
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-DKDVADLGQLVPTGTC-VYVEG 106
+V + GW+ R QGK S F + DG+ LQV++ DK L C V + G
Sbjct: 15 RVCIKGWIHRMRRQGK-SLMFFILRDGT--GFLQVLLMDKLCQTYDALTVNTECTVEIYG 71
Query: 107 MLKNPPEG 114
+K PEG
Sbjct: 72 AIKEVPEG 79
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 149/276 (53%), Gaps = 10/276 (3%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 226
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410
E F L D M E + +CD +D D E AK + IN PF R+
Sbjct: 227 ECPFITLDDLM---EKIEELVCD-TVDRLLADEE--AKKLLEH-INPKFQPPERPFLRME 279
Query: 411 YTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR 470
Y E + F N +G D+A ER++T+ KP+++ +P IKAFYM+
Sbjct: 280 YKDAIKWLQEHNVENE-FGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQ 337
Query: 471 LNDDLKTVA-AMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGT 529
+ T+ ++D+L+P VGE++GGS R ++D + +++ + +PY WYLD R +GT
Sbjct: 338 RDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGT 397
Query: 530 VKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 565
H G+GLG ER I + T ++IRDV +PR+ GR
Sbjct: 398 CPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRC 433
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-DKDVADLGQLVPTGTC-VYVEG 106
+V + GW+ R QGK S F + DG+ LQV++ DK L C V + G
Sbjct: 13 RVCIKGWIHRMRRQGK-SLMFFILRDGT--GFLQVLLMDKLCQTYDALTVNTECTVEIYG 69
Query: 107 MLKNPPEG 114
+K PEG
Sbjct: 70 AIKEVPEG 77
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 144/278 (51%), Gaps = 15/278 (5%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + +F A+LT S QL +E+ ++ + ++RAE S T RHLAE+ +E
Sbjct: 191 GSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEA 250
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDK-SCINRLRMVASTPFERI 409
E+ F +D +N E V + D MA + DK +N + + PF+R+
Sbjct: 251 ELPFISFEDLLNHLEDLVCTVID----------NVMAVHGDKIRKMNPHLKLPTRPFKRM 300
Query: 410 TYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM 469
TY K + E+G D++ + ER +T+ + P+ + ++P +KAFYM
Sbjct: 301 TYADAIKYCNDHGILNK--DKPFEYGEDISEKPERQMTD-EIGCPIFMIHFPSKMKAFYM 357
Query: 470 -RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFG 528
++ ++D+L+P VGE++GGS R YD + + GL +PY WY R++G
Sbjct: 358 SKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYG 417
Query: 529 TVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566
+ H G+GLG ER++++ G D+IR V +PRY R +
Sbjct: 418 SCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 135/273 (49%), Gaps = 24/273 (8%)
Query: 295 YTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ +F AFL S QL E A + VY P FRAE +T+RHL E W ++ EMA
Sbjct: 176 FPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 354 F-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412
F D ++ M+ E V +++ +H +++ + ++ + PF R++Y
Sbjct: 236 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYD 286
Query: 413 XXXXXXXXXXKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYPKGIKAFY 468
KE + WG D+ +E ER Y+ E + +Y YP K FY
Sbjct: 287 KALEILGDLGKE-------IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFY 339
Query: 469 -MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRF 527
M+ ++ + A D+ V E+ G QRE R+D++ +I++ GL E +E+YL R+
Sbjct: 340 IMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRY 398
Query: 528 GTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
G H GFGLG ER+I + NIR+VI FPR
Sbjct: 399 GMPPHGGFGLGAERLIKQMLDLPNIREVILFPR 431
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVP---TG 99
L G++V+V GWV ++ G F ++ DG Q+ K D L +L+P +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIV----QITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----------KTKLTLEF 148
V VEG++ P+ K E+ +K+V +++ A+ P+P T+L F
Sbjct: 70 DVVAVEGVVNFTPKA-KLGFEILPEKIV---VLNRAETPLPLDPTGKVKAELDTRLNNRF 125
Query: 149 LRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT 208
+ R P + A+ +IR+++ A F + GF+ IHTP I + EG E+F +
Sbjct: 126 MDLRRP------EVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK 179
Query: 209 TLISDA 214
DA
Sbjct: 180 YFEEDA 185
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 24/273 (8%)
Query: 295 YTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ +F AFL S QL + A + VY P FRAE +T+RHL E W ++ EMA
Sbjct: 176 FPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 354 F-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412
F D ++ M+ E V +++ +H +++ + ++ + PF R++Y
Sbjct: 236 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYD 286
Query: 413 XXXXXXXXXXKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYPKGIKAFY 468
KE + WG D+ +E ER Y+ E + +Y YP K FY
Sbjct: 287 KALEILGDLGKE-------IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFY 339
Query: 469 -MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRF 527
M+ ++ + A D+ V E+ G QRE R+D++ +I++ GL E +E+YL R+
Sbjct: 340 IMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRY 398
Query: 528 GTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
G H GFGLG ER+I + NIR+VI FPR
Sbjct: 399 GMPPHGGFGLGAERLIKQMLDLPNIREVILFPR 431
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVP---TG 99
L G++V+V GWV ++ G F ++ DG Q+ K D L +L+P +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIV----QITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----KTKLTLEFLRDRIP 154
V VEG++ P+ K E+ +K+V +++ A+ P+P K K L+ D
Sbjct: 70 DVVAVEGVVNFTPKA-KLGFEILPEKIV---VLNRAETPLPLDPTGKVKAELDTRLDNRF 125
Query: 155 FRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 214
R + A+ +IR+++ A F + GF+ IHTP I + EG E+F + DA
Sbjct: 126 MDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDA 185
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 16/262 (6%)
Query: 299 FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358
+F ++AFL S QL E A V V+ P +RAE S T HLAEF ++ EMAF+D
Sbjct: 177 YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYN 236
Query: 359 DDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXX 418
D M E + + + + ++++ + NY+ + P +R+ YT
Sbjct: 237 DVMQLLEKILHNIVKTIKEEGKEELKIL--NYEPPEVK-------IPIKRLKYTEAIEIL 287
Query: 419 XXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTV 478
+++G D+ + R L E + + ++P + FY + + +
Sbjct: 288 RSKG-------YNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPEL 340
Query: 479 AAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLG 538
+ L+ K E++ GS R + +V++ ++ GL E +E++L +G H+GFG+G
Sbjct: 341 SESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMG 400
Query: 539 FERMILFATGIDNIRDVIPFPR 560
R+++ TGI ++++++PFPR
Sbjct: 401 LARLMVMLTGIQSVKEIVPFPR 422
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG--QLVPTGTCVYV 104
G++V GWV R+ G F L G QV+VDK+ + G Q + + + V
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLG----QVVVDKNSSAFGISQELTQESVIQV 71
Query: 105 EGMLK---NPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----KTKLTLEF-LRDRIPF 155
G++K P G IEL + ++ ++ AK P+P K K ++ LR+R+
Sbjct: 72 RGIVKADKRAPRG----IELHAE---EITLLSKAKAPLPLDVSGKVKADIDTRLRERV-L 123
Query: 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT-----TL 210
R + AV +I++ A L K+GF+ I TP I S EG ++F V
Sbjct: 124 DLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAF 183
Query: 211 ISDADKLEKELI 222
++ + +L KEL+
Sbjct: 184 LAQSPQLYKELM 195
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 24/268 (8%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF-SD 356
D+F ++A+L S QL + VY P +R E HTSRHL E+ ++ EM F +D
Sbjct: 167 DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD 226
Query: 357 LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXX 416
+D M EA + M + L+ D++ + + + R+ + +RI
Sbjct: 227 EEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEA-KRIL------ 279
Query: 417 XXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKP----VIVYNYPKGIKAFYMRLN 472
KE E G DL+ E ER L E ++ + V YP+ ++ FY
Sbjct: 280 ------KE----ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPE 329
Query: 473 DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKH 532
+D T + D+L + E+ G QR RY+ + ++ G+ E + YL++ ++G H
Sbjct: 330 ED-GTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPH 387
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFPR 560
GF +G ER+ G+ N+R FPR
Sbjct: 388 GGFAIGAERLTQKLLGLPNVRYARAFPR 415
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 23/317 (7%)
Query: 259 ISASVTELTKAKENLAKLEERSKLKP-GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY 317
I A V EL + K E K G P + G + +F +A+L S Q +
Sbjct: 183 IQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQL 242
Query: 318 ACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDM--NCAEAYVKFMCDW 374
A VY GP FRAE+S+T RH+ EF ++ EMAF + ++ +E +V F+
Sbjct: 243 IVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV-FIFSE 301
Query: 375 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEW 434
L ++E + K Y + ++ R+TY KE FE
Sbjct: 302 LPKRFAHEIELVRKQY---PVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE----- 353
Query: 435 GIDLASEHERYLTEVKFQKP----VIVYNYPKGIKAFY-MRLNDDLKTVAAMDVLVPKVG 489
DL++E+E++L ++ K I+ +P I+ FY M + K + D + +
Sbjct: 354 --DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFM-RGE 410
Query: 490 ELIGGSQREERYDVIKSRIEDMGL-PLEP-YEWYLDLRRFGTVKHSGFGLGFERMILFAT 547
E++ G+QR + +++ R++ GL P +P + Y D +G H+G G+G ER+++F
Sbjct: 411 EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYL 470
Query: 548 GIDNIRDVIPFPRYPGR 564
+ NIR FPR P R
Sbjct: 471 DLKNIRRASLFPRDPKR 487
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVND------GSCPANLQVIVDKDVADLGQLVPTG 99
+ ++V V R+QG + AFL + G AN + + K++ +
Sbjct: 38 SDKEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLE 96
Query: 100 TCVYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPI------------PKTK 143
+ V V G++K E T Q +E+ + K+ + P PI
Sbjct: 97 SIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET-PEALPILLEDASRSEAEAEAAG 155
Query: 144 LTLEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEG 200
L + L R+ +R RT T A+ RI+ + +L + F +HTP + + EG
Sbjct: 156 LPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEG 215
Query: 201 AGEMFQVT 208
+F+VT
Sbjct: 216 GSSVFEVT 223
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 23/317 (7%)
Query: 259 ISASVTELTKAKENLAKLEERSKLKP-GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY 317
I A V EL + K E K G P + G + +F +A+L S Q +
Sbjct: 180 IQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQL 239
Query: 318 ACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDM--NCAEAYVKFMCDW 374
A VY GP FRAE+S+T RH+ EF ++ EMAF + ++ +E +V F+
Sbjct: 240 IVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV-FIFSE 298
Query: 375 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEW 434
L ++E + K Y + ++ R+TY KE FE
Sbjct: 299 LPKRFAHEIELVRKQY---PVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE----- 350
Query: 435 GIDLASEHERYLTEVKFQKP----VIVYNYPKGIKAFY-MRLNDDLKTVAAMDVLVPKVG 489
DL++E+E++L ++ K I+ +P I+ FY M + K + D + +
Sbjct: 351 --DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFM-RGE 407
Query: 490 ELIGGSQREERYDVIKSRIEDMGL-PLEP-YEWYLDLRRFGTVKHSGFGLGFERMILFAT 547
E++ G+QR + +++ R++ GL P +P + Y D +G H+G G+G ER+++F
Sbjct: 408 EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYL 467
Query: 548 GIDNIRDVIPFPRYPGR 564
+ NIR FPR P R
Sbjct: 468 DLKNIRRASLFPRDPKR 484
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVND------GSCPANLQVIVDKDVADLGQLVPTG 99
+ ++V V R+QG + AFL + G AN + + K++ +
Sbjct: 35 SDKEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLE 93
Query: 100 TCVYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPI------------PKTK 143
+ V V G++K E T Q +E+ + K+ + P PI
Sbjct: 94 SIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET-PEALPILLEDASRSEAEAEAAG 152
Query: 144 LTLEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEG 200
L + L R+ +R RT T A+ RI+ + +L + F +HTP + + EG
Sbjct: 153 LPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEG 212
Query: 201 AGEMFQVT 208
+F+VT
Sbjct: 213 GSSVFEVT 220
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 23/290 (7%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G + G + +F R+A+L S QL + V+ GP FRAE+S+T RHL
Sbjct: 273 GCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLT 332
Query: 344 EFWMVEPEMAF-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYD-KSCINRLRMV 401
EF ++ EM + + ++ E F+ D + D+++ + K Y + I R
Sbjct: 333 EFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYR---- 388
Query: 402 ASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEV---KFQKPVIVY 458
PF R+TY + ++ D + E L E+ K+ +
Sbjct: 389 ---PFLRLTYKEAIEMLRASGETIGDYD-------DFTTPQEVKLGELIKAKYNTDFYIL 438
Query: 459 N-YPKGIKAFY-MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE 516
+ +P I+ FY M DD + DV V + E+ G+QR + + R + G+
Sbjct: 439 DKFPAAIRPFYTMPDIDDPNYSNSYDVFV-RGQEITSGAQRIHDPEFLMKRCIEKGVDPA 497
Query: 517 PYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566
+ Y++ RFG+ H+G G+G ER+ + GI NIR V FPR P R +
Sbjct: 498 TLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
RT T A+ RI++A FL Q F+ IHTP + EG +F+V
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 449 VKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVP-KVGELIGGSQREERYDVIKSR 507
++ ++P + N P+ FY R + + D+++P GE+ G +RE Y+ I ++
Sbjct: 178 MEMEEPFWIVNIPR---EFYDREENGVWK--NYDLILPYGYGEVSSGGEREWEYEKIVAK 232
Query: 508 IEDMGLPLEPYEWYLDLRRFGTVKHS-GFGLGFERMILFATGIDNIRDVIPFPRYPG 563
I GL + + YL++ R G +K S G G+G ER++ F G +I +V PFPR PG
Sbjct: 233 IRAAGLKEDSFRPYLEIARAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRVPG 289
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 450 KFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVP-KVGELIGGSQREERYDVIKSRI 508
+ ++P + N P+ FY R D D+++P GE+ G +RE Y+ I ++I
Sbjct: 179 EMEEPFWIINIPR---EFYDREVDGFWR--NYDLILPYGYGEVASGGEREWEYEKIVAKI 233
Query: 509 EDMGLPLEPYEWYLDLRRFGTVKHS-GFGLGFERMILFATGIDNIRDVIPFPRYPG 563
GL + + YL++ + G +K S G G+G ER++ F G +I +V PFPR PG
Sbjct: 234 RKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 289
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 458 YNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGL---- 513
+ PK + A ++ + A D+++ E+ GGS R D+ ++ +G+
Sbjct: 451 FTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEE 509
Query: 514 PLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
E + + LD ++GT H+G G +R+ + TG DNIRDVI FP+ A L
Sbjct: 510 QREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACL 563
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVY 103
G+QV + GWV R + GS F+++ D +QV D D AD L + C+
Sbjct: 15 GQQVTLCGWVN--RRRDLGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IE-----LRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
V G ++ E + IE L + DV +D + +L +L R
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLR 130
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
P +A + R + F+ GFL I TP++T + EGA
Sbjct: 131 RP------EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 458 YNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGL---- 513
+ PK + A ++ + A D+++ E+ GGS R D+ ++ +G+
Sbjct: 451 FTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEE 509
Query: 514 PLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
E + + LD ++GT H+G G +R+ + TG DNIRDVI FP+ A L
Sbjct: 510 QREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACL 563
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVY 103
G+QV + GWV R + GS F+++ D +QV D D AD L + C+
Sbjct: 15 GQQVTLCGWVN--RRRDLGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IE-----LRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
V G ++ E + IE L + DV +D + +L +L R
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLR 130
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
P +A + R + F+ GFL I TP++T + EGA
Sbjct: 131 RP------EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 40/265 (15%)
Query: 320 AVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHC 379
+ VY G FR E ++RH EF M+E A++D +D M E + + +L
Sbjct: 241 GLEKVYEIGRVFRNE-GISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTT 299
Query: 380 FDDMEFMAKNYDKSCIN------RLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVE 433
Y + ++ RL MV + Y +E + E E
Sbjct: 300 -------KIQYGEHLVDLTPEWRRLHMVDAIK----EYVGVDFWRQMSDEEAR--ELAKE 346
Query: 434 WGIDLA---------SEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVL 484
G+++A +E E K +P +Y +P I + DD + ++
Sbjct: 347 HGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELF 406
Query: 485 VPKVGELIGGS---------QREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGF 535
+ VG + QR+ + +K R + E E +L+ +G G
Sbjct: 407 I--VGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGL 464
Query: 536 GLGFERMILFATGIDNIRDVIPFPR 560
G+G +R+++ T +IRDV+ FP+
Sbjct: 465 GIGVDRLVMLLTNSPSIRDVLLFPQ 489
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 94/256 (36%), Gaps = 31/256 (12%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLL------- 376
V+ FR E + RH EF M+E MA++D D + E+ + + +L
Sbjct: 254 VFEINRNFRNE-GISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 377 -DHCFDDMEFMAKNYDKSCINRLR----MVASTPFERITYTXXXXXXXXXXKEGKHFENK 431
+H FD + K + I + R M F+ E +
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFD----------AAKALAESIGITVE 362
Query: 432 VEWGID-LASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR------LNDDLKTVAAMDVL 484
WG+ + +E + E +P + YP + R + D + +
Sbjct: 363 KSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREI 422
Query: 485 VPKVGELIGGSQREERY-DVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMI 543
EL + ER+ + + ++ + E Y+ +G +G G+G +RMI
Sbjct: 423 GNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMI 482
Query: 544 LFATGIDNIRDVIPFP 559
+ T IRDVI FP
Sbjct: 483 MLFTNSHTIRDVILFP 498
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
+G H G LG +R+I TG +IRDVI FP+
Sbjct: 534 YGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPK 567
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 15/248 (6%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLL---DHCF 380
V+ FR E + RH EF M+E MA++D KD + E+ + + +L + +
Sbjct: 254 VFEINRNFRNE-GISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTY 312
Query: 381 DDMEF-MAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGID-L 438
D+ K ++K + + G H E WG+ +
Sbjct: 313 GDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKS--WGLGRI 370
Query: 439 ASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR------LNDDLKTVAAMDVLVPKVGELI 492
+E + E +P + YP + R + D + + EL
Sbjct: 371 VTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELN 430
Query: 493 GGSQREERY-DVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDN 551
+ +R+ D + ++ + E Y+ G +G G+G +RM++ T
Sbjct: 431 DAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHT 490
Query: 552 IRDVIPFP 559
IRDVI FP
Sbjct: 491 IRDVILFP 498
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 516 EPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
E + ++L+ +G H G G +R++ TG +IR+VI FP+
Sbjct: 506 EKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPK 550
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 167 RIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
R+R+ + A FL ++GF+ + TP +T S EGA
Sbjct: 145 RLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
R+ GW TG + K A E+ CP ++ VI+D DLG +PT + VE
Sbjct: 91 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG--LPTEAYISVE 143
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
R+ GW TG + K A E+ CP ++ VI+D DLG +PT + VE
Sbjct: 91 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG--LPTEAYISVE 143
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
+G +G+G+G +R+ +F T +NI++V+ FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
+G +G+G+G +R+ +F T +NI++V+ FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 335 HSHTSRHLAEFWMVEPEMAFSDLKDDM 361
H HT H + FWM P +A DL+DD+
Sbjct: 141 HIHTGHHSSMFWMRVPLVAPEDLRDDI 167
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 429 ENKVEWGIDLASEHERYLTEVKFQKPVIVYNY------PKGIKAFYMRLND---DLKTVA 479
EN +WG +H + E+ KPV++ Y P A Y ND DL
Sbjct: 279 ENYAQWGAKWIEDHIKIAKEIG--KPVVLEEYGIPKSAPVNRTAIYRLWNDLVYDLGGDG 336
Query: 480 AMDVLVPKVGELIGGSQREER 500
AM ++ +GE GS R+ER
Sbjct: 337 AMFWMLAGIGE---GSDRDER 354
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 521 YLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
Y+ +G G G+G +R+++ T IRDV+ FP
Sbjct: 485 YIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 157 PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
P+ +I A++ ++ + A LQ+ P+ G G+ T++ K
Sbjct: 350 PKEFSIPNFAQLNSSQSNAVSHVLQR--------PLSLIQGPPGTGKTVTSATIVYHLSK 401
Query: 217 LEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276
+ K+ I PS ++ +++ G V +L + RE + +SV+ L A NL
Sbjct: 402 IHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAK--SREDVESSVSNL--ALHNLVGR 457
Query: 277 EERSKLKPGIPQKD 290
+ +LK + KD
Sbjct: 458 GAKGELKNLLKLKD 471
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 29 RVLI----KSILTRPDGGAGLAGRQVRV---GGWVK------TGREQGK----GSFAFLE 71
RVL+ K +L P G AGL GR++ V GGW + +G++ K ++A
Sbjct: 247 RVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRW 306
Query: 72 VNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDV 129
V A L V+ VA +G+ P G V G P KIE + +V D+
Sbjct: 307 VAKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTETEDP----VKIEKAIGEVFDL 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,904,338
Number of Sequences: 62578
Number of extensions: 715101
Number of successful extensions: 1873
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1796
Number of HSP's gapped (non-prelim): 62
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)