Query 008405
Match_columns 567
No_of_seqs 212 out of 1569
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 11:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02221 asparaginyl-tRNA synt 100.0 2E-118 5E-123 978.0 47.0 567 1-567 1-572 (572)
2 PLN02532 asparagine-tRNA synth 100.0 6E-111 1E-115 921.0 42.0 539 24-567 24-633 (633)
3 PLN02603 asparaginyl-tRNA synt 100.0 2E-109 3E-114 908.5 43.3 472 25-567 85-565 (565)
4 PTZ00425 asparagine-tRNA ligas 100.0 5E-107 1E-111 886.8 44.2 511 27-567 52-586 (586)
5 COG0017 AsnS Aspartyl/asparagi 100.0 7E-107 2E-111 850.1 39.5 427 27-566 2-434 (435)
6 TIGR00457 asnS asparaginyl-tRN 100.0 3E-101 6E-106 833.4 41.1 447 31-567 3-453 (453)
7 PRK03932 asnC asparaginyl-tRNA 100.0 3E-100 6E-105 826.1 42.5 445 28-567 2-450 (450)
8 KOG0554 Asparaginyl-tRNA synth 100.0 6E-101 1E-105 778.9 31.1 442 31-567 4-446 (446)
9 TIGR00458 aspS_arch aspartyl-t 100.0 5E-96 1E-100 788.4 41.1 411 42-566 7-427 (428)
10 PRK05159 aspC aspartyl-tRNA sy 100.0 1.3E-95 3E-100 788.3 39.9 420 28-566 3-436 (437)
11 PTZ00401 aspartyl-tRNA synthet 100.0 3.9E-95 8E-100 795.0 42.1 450 5-566 43-549 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 3.1E-95 7E-100 795.6 40.8 445 6-566 47-529 (530)
13 TIGR00499 lysS_bact lysyl-tRNA 100.0 8.1E-89 1.8E-93 742.2 40.4 429 18-563 21-494 (496)
14 PRK12445 lysyl-tRNA synthetase 100.0 1E-88 2.2E-93 741.4 40.6 428 24-563 38-503 (505)
15 KOG0556 Aspartyl-tRNA syntheta 100.0 3.5E-90 7.6E-95 699.4 27.0 445 6-566 49-532 (533)
16 PRK00484 lysS lysyl-tRNA synth 100.0 2.3E-88 4.9E-93 738.5 40.1 434 17-564 21-490 (491)
17 PLN02502 lysyl-tRNA synthetase 100.0 2E-87 4.2E-92 734.7 39.4 432 18-563 77-551 (553)
18 COG0173 AspS Aspartyl-tRNA syn 100.0 1.6E-86 3.5E-91 701.6 31.6 410 38-563 6-558 (585)
19 PTZ00417 lysine-tRNA ligase; P 100.0 3.1E-85 6.6E-90 719.5 41.1 442 17-563 100-583 (585)
20 PTZ00385 lysyl-tRNA synthetase 100.0 1.6E-84 3.5E-89 715.3 41.0 438 23-564 80-565 (659)
21 TIGR00459 aspS_bact aspartyl-t 100.0 1.4E-84 3.1E-89 714.0 37.5 411 28-563 2-555 (583)
22 KOG0555 Asparaginyl-tRNA synth 100.0 2.2E-84 4.8E-89 654.7 26.1 444 8-566 93-544 (545)
23 PRK02983 lysS lysyl-tRNA synth 100.0 6.5E-83 1.4E-87 746.1 38.6 432 18-564 629-1093(1094)
24 COG1190 LysU Lysyl-tRNA synthe 100.0 9.2E-84 2E-88 678.1 24.2 434 16-563 27-500 (502)
25 PLN02903 aminoacyl-tRNA ligase 100.0 4.1E-81 8.8E-86 688.8 38.8 409 38-563 63-623 (652)
26 PRK00476 aspS aspartyl-tRNA sy 100.0 4.8E-80 1E-84 683.2 38.6 414 28-563 4-560 (588)
27 PRK12820 bifunctional aspartyl 100.0 6.4E-80 1.4E-84 685.4 38.4 408 38-563 9-576 (706)
28 KOG1885 Lysyl-tRNA synthetase 100.0 8.7E-81 1.9E-85 640.9 14.4 435 24-562 78-555 (560)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 2.5E-77 5.3E-82 622.6 26.5 319 144-563 2-322 (322)
30 PRK06462 asparagine synthetase 100.0 1.1E-76 2.3E-81 620.2 26.6 322 145-566 9-334 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 7.1E-75 1.5E-79 608.9 20.8 317 146-562 2-334 (335)
32 KOG2411 Aspartyl-tRNA syntheta 100.0 1.1E-69 2.3E-74 561.5 26.8 408 39-563 39-599 (628)
33 cd00775 LysRS_core Lys_tRNA sy 100.0 2.2E-68 4.7E-73 556.7 27.0 300 160-562 2-328 (329)
34 cd00669 Asp_Lys_Asn_RS_core As 100.0 6E-66 1.3E-70 523.6 25.4 260 166-562 1-268 (269)
35 TIGR00462 genX lysyl-tRNA synt 100.0 2E-65 4.4E-70 528.9 23.7 279 166-558 1-304 (304)
36 cd00777 AspRS_core Asp tRNA sy 100.0 2.1E-61 4.7E-66 492.9 21.4 268 166-563 1-280 (280)
37 PRK09350 poxB regulator PoxA; 100.0 4.6E-59 1E-63 481.9 24.9 273 163-555 2-306 (306)
38 COG2269 Truncated, possibly in 100.0 1E-49 2.2E-54 391.2 17.3 283 165-562 15-321 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.8 1E-18 2.2E-23 160.2 12.3 112 44-161 11-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.7 3.4E-17 7.4E-22 143.2 12.1 99 49-155 1-103 (103)
41 cd04322 LysRS_N LysRS_N: N-ter 99.7 4.9E-17 1.1E-21 143.4 11.6 99 49-157 1-108 (108)
42 cd04316 ND_PkAspRS_like_N ND_P 99.7 9.4E-17 2E-21 141.6 12.1 94 42-141 7-105 (108)
43 cd04320 AspRS_cyto_N AspRS_cyt 99.6 1.9E-15 4.2E-20 131.8 12.2 89 49-141 1-100 (102)
44 cd04318 EcAsnRS_like_N EcAsnRS 99.6 8.8E-15 1.9E-19 122.5 11.3 79 49-130 1-81 (82)
45 cd04321 ScAspRS_mt_like_N ScAs 99.6 2.3E-14 4.9E-19 121.2 10.4 80 49-131 1-86 (86)
46 cd04323 AsnRS_cyto_like_N AsnR 99.5 3.3E-14 7.3E-19 119.6 10.2 79 49-131 1-84 (84)
47 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.5 3.6E-14 7.8E-19 119.6 10.1 79 49-131 1-85 (85)
48 cd00645 AsnA Asparagine synthe 99.4 6.7E-12 1.4E-16 126.0 17.5 206 322-558 82-299 (309)
49 PRK09537 pylS pyrolysyl-tRNA s 99.4 3.2E-12 7E-17 136.1 13.9 39 158-196 190-233 (417)
50 TIGR02367 PylS pyrrolysyl-tRNA 99.4 4.6E-12 1E-16 134.6 12.7 39 322-361 319-359 (453)
51 COG0016 PheS Phenylalanyl-tRNA 99.4 7.5E-12 1.6E-16 129.3 13.4 128 322-555 193-325 (335)
52 PTZ00213 asparagine synthetase 99.3 4.7E-11 1E-15 121.2 18.5 69 487-557 264-334 (348)
53 PRK05425 asparagine synthetase 99.3 3.6E-11 7.8E-16 121.9 17.0 220 306-557 72-308 (327)
54 PRK00488 pheS phenylalanyl-tRN 99.3 1.6E-11 3.4E-16 127.6 13.8 50 323-373 187-238 (339)
55 PF01409 tRNA-synt_2d: tRNA sy 99.3 1.2E-11 2.7E-16 124.4 10.8 50 322-372 103-154 (247)
56 cd00768 class_II_aaRS-like_cor 99.2 2.5E-11 5.3E-16 118.0 8.5 55 301-356 50-111 (211)
57 PLN02853 Probable phenylalanyl 99.2 1.5E-10 3.2E-15 125.1 13.9 47 323-370 344-392 (492)
58 PTZ00326 phenylalanyl-tRNA syn 99.2 1.7E-10 3.6E-15 125.3 11.4 34 322-356 358-391 (494)
59 TIGR00669 asnA aspartate--ammo 99.1 2.2E-09 4.7E-14 108.8 17.5 221 306-557 69-315 (330)
60 PRK04172 pheS phenylalanyl-tRN 98.8 6.3E-08 1.4E-12 107.1 16.1 45 323-368 352-398 (489)
61 PLN02788 phenylalanine-tRNA sy 98.8 8E-08 1.7E-12 102.4 15.9 37 317-354 143-179 (402)
62 PF01336 tRNA_anti-codon: OB-f 98.8 1.9E-08 4.1E-13 81.7 8.5 74 50-129 1-75 (75)
63 cd00773 HisRS-like_core Class 98.8 8.5E-07 1.8E-11 90.2 20.4 30 167-196 3-32 (261)
64 TIGR00468 pheS phenylalanyl-tR 98.7 2.4E-07 5.1E-12 96.0 16.1 46 322-368 151-198 (294)
65 TIGR00470 sepS O-phosphoseryl- 98.6 1.4E-07 3.1E-12 100.7 10.4 50 322-371 208-259 (533)
66 TIGR00469 pheS_mito phenylalan 98.4 3.6E-06 7.8E-11 90.7 13.5 59 478-554 278-337 (460)
67 cd00496 PheRS_alpha_core Pheny 98.1 1.9E-05 4E-10 78.4 9.6 50 321-371 80-131 (218)
68 PF00587 tRNA-synt_2b: tRNA sy 98.0 1.4E-05 3E-10 76.2 7.5 50 323-373 85-136 (173)
69 cd00778 ProRS_core_arch_euk Pr 97.7 6.4E-05 1.4E-09 76.7 7.3 49 323-371 121-171 (261)
70 cd00772 ProRS_core Prolyl-tRNA 97.6 0.00049 1.1E-08 70.3 11.5 47 323-370 121-170 (264)
71 cd00670 Gly_His_Pro_Ser_Thr_tR 97.6 0.00031 6.7E-09 69.8 9.4 30 167-196 3-32 (235)
72 TIGR00442 hisS histidyl-tRNA s 97.6 0.0003 6.6E-09 75.9 9.6 32 165-196 13-44 (397)
73 cd00779 ProRS_core_prok Prolyl 97.5 0.00028 6.2E-09 71.7 8.2 30 166-195 31-60 (255)
74 TIGR00409 proS_fam_II prolyl-t 97.5 0.00089 1.9E-08 75.6 12.0 32 165-196 46-77 (568)
75 PRK00037 hisS histidyl-tRNA sy 97.4 0.00062 1.3E-08 73.8 10.2 32 165-196 17-48 (412)
76 PRK09194 prolyl-tRNA synthetas 97.4 0.00098 2.1E-08 75.4 11.7 32 165-196 46-77 (565)
77 PRK05431 seryl-tRNA synthetase 97.4 0.00061 1.3E-08 74.3 9.6 33 164-196 168-201 (425)
78 TIGR00414 serS seryl-tRNA synt 97.3 0.00093 2E-08 72.7 9.8 33 164-196 171-203 (418)
79 cd00771 ThrRS_core Threonyl-tR 97.3 0.00085 1.8E-08 69.8 8.7 31 166-196 30-60 (298)
80 cd00774 GlyRS-like_core Glycyl 97.3 0.00036 7.9E-09 70.8 5.8 31 166-196 32-64 (254)
81 cd00770 SerRS_core Seryl-tRNA 97.1 0.0018 3.9E-08 67.3 9.1 32 165-196 51-82 (297)
82 PLN02908 threonyl-tRNA synthet 97.1 0.0021 4.5E-08 74.3 10.1 50 323-373 404-456 (686)
83 COG0124 HisS Histidyl-tRNA syn 97.0 0.0025 5.3E-08 69.2 9.0 48 323-371 103-154 (429)
84 PRK08661 prolyl-tRNA synthetas 97.0 0.0017 3.6E-08 72.0 7.7 46 323-369 133-180 (477)
85 PRK12305 thrS threonyl-tRNA sy 97.0 0.0051 1.1E-07 69.7 11.8 33 164-196 204-236 (575)
86 TIGR00408 proS_fam_I prolyl-tR 97.0 0.0013 2.8E-08 72.8 6.6 48 323-370 127-176 (472)
87 cd04489 ExoVII_LU_OBF ExoVII_L 96.9 0.01 2.2E-07 48.5 10.2 73 50-127 2-75 (78)
88 PRK12325 prolyl-tRNA synthetas 96.9 0.0041 8.9E-08 68.2 9.9 31 166-196 47-77 (439)
89 TIGR00418 thrS threonyl-tRNA s 96.9 0.0062 1.3E-07 68.9 11.5 33 164-196 198-230 (563)
90 PRK12292 hisZ ATP phosphoribos 96.9 0.0037 7.9E-08 67.5 9.3 31 165-195 16-46 (391)
91 PRK12293 hisZ ATP phosphoribos 96.9 0.0059 1.3E-07 63.0 10.3 32 165-196 18-49 (281)
92 KOG2784 Phenylalanyl-tRNA synt 96.9 0.00086 1.9E-08 69.6 3.8 48 322-370 334-383 (483)
93 PRK14799 thrS threonyl-tRNA sy 96.8 0.0024 5.2E-08 71.6 7.5 51 323-374 251-304 (545)
94 CHL00201 syh histidine-tRNA sy 96.8 0.0071 1.5E-07 66.1 10.7 32 165-196 17-48 (430)
95 COG2502 AsnA Asparagine synthe 96.8 0.046 9.9E-07 54.6 14.6 69 488-557 246-315 (330)
96 PRK00413 thrS threonyl-tRNA sy 96.8 0.0079 1.7E-07 69.0 11.1 33 164-196 268-300 (638)
97 TIGR00443 hisZ_biosyn_reg ATP 96.7 0.0036 7.9E-08 65.5 7.2 32 165-196 7-38 (314)
98 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.7 0.026 5.7E-07 48.0 11.3 75 50-132 2-80 (95)
99 PRK12444 threonyl-tRNA synthet 96.7 0.0092 2E-07 68.6 11.0 49 323-372 357-408 (639)
100 PLN02837 threonine-tRNA ligase 96.7 0.004 8.8E-08 71.1 7.8 49 323-373 331-383 (614)
101 PRK04173 glycyl-tRNA synthetas 96.5 0.0051 1.1E-07 67.8 7.2 50 321-373 185-239 (456)
102 PF13393 tRNA-synt_His: Histid 96.5 0.0096 2.1E-07 62.0 8.9 33 164-196 8-40 (311)
103 PLN02530 histidine-tRNA ligase 96.5 0.013 2.9E-07 65.1 10.1 31 165-195 83-113 (487)
104 PLN02972 Histidyl-tRNA synthet 96.5 0.013 2.8E-07 67.7 10.0 33 163-195 338-370 (763)
105 PLN02678 seryl-tRNA synthetase 96.4 0.0049 1.1E-07 67.4 6.2 32 165-196 173-204 (448)
106 PF13742 tRNA_anti_2: OB-fold 96.4 0.029 6.2E-07 48.7 9.6 76 47-127 21-98 (99)
107 PRK03991 threonyl-tRNA synthet 96.3 0.014 3.1E-07 66.5 9.5 52 323-374 310-365 (613)
108 cd04487 RecJ_OBF2_like RecJ_OB 96.3 0.035 7.5E-07 45.5 9.3 72 50-129 1-73 (73)
109 PLN02320 seryl-tRNA synthetase 96.3 0.016 3.4E-07 64.1 9.1 48 323-373 315-370 (502)
110 cd04483 hOBFC1_like hOBFC1_lik 96.2 0.056 1.2E-06 46.3 10.4 68 52-127 2-90 (92)
111 PRK12420 histidyl-tRNA synthet 96.0 0.03 6.6E-07 61.1 9.9 32 165-196 17-48 (423)
112 COG1107 Archaea-specific RecJ- 96.0 0.015 3.2E-07 64.0 7.1 93 23-130 196-289 (715)
113 PRK12421 ATP phosphoribosyltra 96.0 0.037 8.1E-07 59.8 10.2 32 165-196 20-51 (392)
114 cd04492 YhaM_OBF_like YhaM_OBF 95.8 0.13 2.8E-06 42.0 10.3 73 52-131 6-78 (83)
115 cd04485 DnaE_OBF DnaE_OBF: A s 95.6 0.047 1E-06 44.4 7.0 72 52-130 2-78 (84)
116 PF04076 BOF: Bacterial OB fol 95.6 0.09 2E-06 46.0 8.9 82 27-127 20-102 (103)
117 TIGR00156 conserved hypothetic 95.5 0.15 3.3E-06 46.1 10.3 81 28-127 44-125 (126)
118 cd04490 PolII_SU_OBF PolII_SU_ 95.2 0.19 4E-06 41.8 9.4 68 50-126 2-72 (79)
119 COG3111 Periplasmic protein wi 95.1 0.2 4.3E-06 44.8 9.6 85 27-129 43-127 (128)
120 cd04482 RPA2_OBF_like RPA2_OBF 95.1 0.23 4.9E-06 42.4 9.8 72 50-131 1-76 (91)
121 cd03524 RPA2_OBF_family RPA2_O 95.0 0.16 3.5E-06 39.6 8.2 68 52-126 2-73 (75)
122 PRK12295 hisZ ATP phosphoribos 94.8 0.13 2.9E-06 55.2 9.3 45 322-370 83-132 (373)
123 COG4085 Predicted RNA-binding 94.8 0.12 2.6E-06 49.6 7.8 75 44-125 48-129 (204)
124 PRK10053 hypothetical protein; 94.8 0.28 6E-06 44.7 9.9 80 29-127 49-129 (130)
125 PF10451 Stn1: Telomere regula 94.5 0.3 6.5E-06 49.7 10.4 73 49-131 68-149 (256)
126 PRK07373 DNA polymerase III su 94.4 0.17 3.6E-06 55.7 9.0 77 46-129 279-360 (449)
127 COG0172 SerS Seryl-tRNA synthe 94.3 0.13 2.9E-06 55.7 8.0 31 166-196 174-204 (429)
128 COG5235 RFA2 Single-stranded D 93.6 0.49 1.1E-05 46.0 9.4 94 28-129 40-143 (258)
129 PRK15491 replication factor A; 93.6 0.3 6.4E-06 52.5 9.0 114 6-133 34-157 (374)
130 PRK06461 single-stranded DNA-b 93.5 1.1 2.4E-05 40.7 11.3 87 28-131 3-100 (129)
131 PRK14699 replication factor A; 93.4 0.47 1E-05 52.7 10.4 121 5-140 33-163 (484)
132 COG0442 ProS Prolyl-tRNA synth 93.3 0.34 7.5E-06 53.7 9.0 47 323-369 131-179 (500)
133 COG0441 ThrS Threonyl-tRNA syn 93.2 0.17 3.6E-06 57.3 6.4 51 323-375 303-357 (589)
134 PRK00960 seryl-tRNA synthetase 92.7 0.28 6.1E-06 54.7 7.2 47 323-370 337-386 (517)
135 PRK05672 dnaE2 error-prone DNA 92.4 0.46 9.9E-06 57.6 9.1 79 46-131 952-1033(1046)
136 cd04474 RPA1_DBD_A RPA1_DBD_A: 92.1 0.82 1.8E-05 39.8 8.1 75 48-125 10-98 (104)
137 PRK07374 dnaE DNA polymerase I 91.9 0.53 1.1E-05 57.6 8.8 78 46-130 999-1081(1170)
138 cd04479 RPA3 RPA3: A subfamily 91.8 1.7 3.8E-05 37.7 9.8 69 44-131 12-80 (101)
139 PRK05673 dnaE DNA polymerase I 91.8 0.5 1.1E-05 57.7 8.5 79 46-131 976-1059(1135)
140 PF08661 Rep_fac-A_3: Replicat 91.8 1 2.2E-05 39.7 8.3 59 44-112 15-73 (109)
141 PF12869 tRNA_anti-like: tRNA_ 91.5 0.48 1E-05 43.4 6.3 68 43-111 63-132 (144)
142 PRK06920 dnaE DNA polymerase I 91.3 0.57 1.2E-05 56.9 8.3 78 46-130 942-1024(1107)
143 PRK06826 dnaE DNA polymerase I 91.3 0.68 1.5E-05 56.6 8.8 79 46-130 990-1073(1151)
144 PF03100 CcmE: CcmE; InterPro 91.0 3.7 8.1E-05 37.4 11.5 84 30-133 37-124 (131)
145 PRK13480 3'-5' exoribonuclease 90.8 1.5 3.1E-05 46.1 9.7 79 47-132 11-93 (314)
146 cd04488 RecG_wedge_OBF RecG_we 90.6 2.1 4.6E-05 33.7 8.6 68 52-126 2-72 (75)
147 KOG2324 Prolyl-tRNA synthetase 90.5 0.28 6.2E-06 51.4 4.0 32 165-196 51-82 (457)
148 COG1570 XseA Exonuclease VII, 89.6 1.5 3.2E-05 47.8 8.8 76 48-128 24-100 (440)
149 PRK07279 dnaE DNA polymerase I 89.5 1.1 2.3E-05 54.2 8.3 74 47-127 884-963 (1034)
150 PRK12294 hisZ ATP phosphoribos 89.2 2.3 5.1E-05 43.7 9.6 33 163-195 4-36 (272)
151 PF15072 DUF4539: Domain of un 88.5 3.6 7.8E-05 34.8 8.5 59 50-112 5-64 (86)
152 PRK07211 replication factor A; 88.3 2 4.2E-05 47.7 8.8 104 6-127 34-147 (485)
153 PRK13254 cytochrome c-type bio 88.3 6.1 0.00013 36.9 10.8 88 30-138 38-128 (148)
154 PRK00286 xseA exodeoxyribonucl 88.0 3 6.6E-05 45.7 10.1 79 47-130 23-102 (438)
155 TIGR00237 xseA exodeoxyribonuc 87.4 3.1 6.6E-05 45.7 9.7 75 49-128 19-94 (432)
156 KOG2783 Phenylalanyl-tRNA synt 87.3 0.32 6.8E-06 51.5 1.8 37 318-355 148-184 (436)
157 TIGR00415 serS_MJ seryl-tRNA s 86.4 3.4 7.4E-05 45.9 9.3 48 323-371 337-387 (520)
158 PRK12366 replication factor A; 85.5 4.8 0.0001 46.4 10.3 94 28-130 278-381 (637)
159 cd04484 polC_OBF polC_OBF: A s 85.1 13 0.00028 30.9 10.2 73 50-127 2-80 (82)
160 cd04491 SoSSB_OBF SoSSB_OBF: A 84.9 7.4 0.00016 32.0 8.6 54 66-127 23-77 (82)
161 PRK12366 replication factor A; 84.1 6.1 0.00013 45.6 10.3 86 27-125 61-154 (637)
162 PRK12421 ATP phosphoribosyltra 84.1 0.87 1.9E-05 49.3 3.4 49 322-371 102-154 (392)
163 PRK07217 replication factor A; 83.2 13 0.00029 38.8 11.3 92 25-133 68-162 (311)
164 PRK07459 single-stranded DNA-b 83.0 9.6 0.00021 34.3 9.1 81 49-132 5-104 (121)
165 PRK12292 hisZ ATP phosphoribos 82.8 1.3 2.8E-05 47.9 4.0 47 323-370 100-150 (391)
166 COG2024 Phenylalanyl-tRNA synt 82.7 0.74 1.6E-05 48.7 2.0 38 523-561 315-353 (536)
167 PRK14699 replication factor A; 82.4 7.3 0.00016 43.4 9.7 85 46-133 285-377 (484)
168 PRK13165 cytochrome c-type bio 82.1 22 0.00048 33.7 11.3 78 45-138 55-135 (160)
169 PRK13150 cytochrome c-type bio 81.2 27 0.00059 33.0 11.6 78 45-138 55-135 (159)
170 TIGR00617 rpa1 replication fac 80.3 11 0.00023 43.4 10.4 95 29-133 180-286 (608)
171 TIGR00443 hisZ_biosyn_reg ATP 80.1 2.3 5E-05 44.5 4.6 34 322-356 88-121 (314)
172 PRK15491 replication factor A; 80.0 8.6 0.00019 41.4 9.0 93 29-133 166-267 (374)
173 KOG3108 Single-stranded DNA-bi 80.0 13 0.00028 38.1 9.7 75 49-131 70-147 (265)
174 PRK10917 ATP-dependent DNA hel 79.5 11 0.00024 43.8 10.4 75 46-128 58-136 (681)
175 PRK06863 single-stranded DNA-b 78.2 13 0.00029 35.4 8.7 51 81-131 54-110 (168)
176 PRK08402 replication factor A; 78.2 11 0.00025 40.2 9.2 89 29-129 62-159 (355)
177 PRK07211 replication factor A; 74.7 17 0.00037 40.4 9.6 92 28-133 160-260 (485)
178 PRK12420 histidyl-tRNA synthet 74.6 3.7 8E-05 44.8 4.5 47 323-370 101-151 (423)
179 PRK07218 replication factor A; 74.3 20 0.00043 39.3 9.9 86 27-130 56-147 (423)
180 cd05694 S1_Rrp5_repeat_hs2_sc2 74.0 8.6 0.00019 31.3 5.4 46 51-105 7-53 (74)
181 PRK06386 replication factor A; 73.8 28 0.00061 37.3 10.6 85 29-132 107-197 (358)
182 PRK08486 single-stranded DNA-b 73.8 14 0.0003 35.8 7.6 52 81-132 51-108 (182)
183 COG0124 HisS Histidyl-tRNA syn 73.5 2.8 6.2E-05 45.8 3.2 32 165-196 17-48 (429)
184 KOG2509 Seryl-tRNA synthetase 73.1 3.5 7.7E-05 44.6 3.7 32 165-196 184-215 (455)
185 PRK07275 single-stranded DNA-b 72.5 19 0.00041 34.2 8.1 52 81-132 49-106 (162)
186 PRK14894 glycyl-tRNA synthetas 71.5 4 8.6E-05 45.4 3.7 31 323-356 167-201 (539)
187 COG0423 GRS1 Glycyl-tRNA synth 70.0 2.1 4.5E-05 47.5 1.2 30 167-196 41-72 (558)
188 PRK06293 single-stranded DNA-b 69.8 27 0.00058 33.1 8.4 52 81-132 45-102 (161)
189 PRK06751 single-stranded DNA-b 68.6 26 0.00057 33.6 8.2 51 81-131 49-105 (173)
190 COG1200 RecG RecG-like helicas 67.9 34 0.00074 39.4 10.2 80 44-130 57-139 (677)
191 CHL00201 syh histidine-tRNA sy 67.8 8.1 0.00017 42.4 5.2 33 323-356 104-136 (430)
192 PRK08763 single-stranded DNA-b 66.9 35 0.00077 32.4 8.7 52 81-132 54-111 (164)
193 PRK07080 hypothetical protein; 66.8 6.6 0.00014 41.0 4.0 48 323-371 153-201 (317)
194 PRK07135 dnaE DNA polymerase I 66.5 14 0.0003 44.6 7.2 63 46-112 896-962 (973)
195 TIGR00442 hisS histidyl-tRNA s 66.3 8.4 0.00018 41.5 4.9 33 323-356 99-131 (397)
196 TIGR00643 recG ATP-dependent D 66.1 29 0.00063 40.0 9.6 74 46-126 31-107 (630)
197 PRK05813 single-stranded DNA-b 65.9 57 0.0012 32.5 10.2 83 47-132 109-210 (219)
198 TIGR00621 ssb single stranded 65.5 37 0.0008 32.1 8.6 52 81-132 53-110 (164)
199 PRK09616 pheT phenylalanyl-tRN 65.3 8.4 0.00018 43.7 4.9 47 323-370 440-488 (552)
200 PRK12295 hisZ ATP phosphoribos 63.8 8.3 0.00018 41.5 4.3 27 170-196 8-34 (373)
201 PF12857 TOBE_3: TOBE-like dom 62.2 39 0.00084 26.0 6.7 51 51-105 6-56 (58)
202 cd04486 YhcR_OBF_like YhcR_OBF 61.9 57 0.0012 26.9 8.0 69 51-130 1-76 (78)
203 KOG1035 eIF-2alpha kinase GCN2 61.5 9.1 0.0002 46.6 4.3 47 323-372 1006-1056(1351)
204 PLN02734 glycyl-tRNA synthetas 60.8 3.3 7.1E-05 47.8 0.5 30 167-196 110-140 (684)
205 PRK07218 replication factor A; 60.4 84 0.0018 34.5 11.2 76 47-131 172-253 (423)
206 PRK02801 primosomal replicatio 60.3 23 0.00049 30.7 5.6 48 81-129 50-100 (101)
207 PRK13732 single-stranded DNA-b 60.0 47 0.001 31.9 8.2 52 81-132 56-115 (175)
208 TIGR00389 glyS_dimeric glycyl- 58.4 3 6.5E-05 47.1 -0.3 31 166-196 37-68 (551)
209 cd04496 SSB_OBF SSB_OBF: A sub 55.3 21 0.00045 29.9 4.5 50 80-129 45-100 (100)
210 COG3705 HisZ ATP phosphoribosy 54.3 13 0.00027 40.3 3.6 31 167-197 18-48 (390)
211 PRK13159 cytochrome c-type bio 51.5 90 0.002 29.4 8.3 87 30-137 38-127 (155)
212 PRK00036 primosomal replicatio 51.4 38 0.00082 29.9 5.5 51 80-131 48-98 (107)
213 PRK06752 single-stranded DNA-b 49.8 34 0.00075 30.0 5.1 52 81-132 49-106 (112)
214 PRK06642 single-stranded DNA-b 49.6 87 0.0019 29.3 8.0 84 48-131 6-116 (152)
215 PRK00448 polC DNA polymerase I 49.1 1.1E+02 0.0023 38.9 10.9 82 46-130 235-321 (1437)
216 cd05705 S1_Rrp5_repeat_hs14 S1 47.5 69 0.0015 25.9 6.2 46 51-105 6-60 (74)
217 PF13567 DUF4131: Domain of un 47.1 1.1E+02 0.0023 27.6 8.4 63 47-112 75-145 (176)
218 PRK06958 single-stranded DNA-b 46.1 27 0.00058 33.8 4.1 52 81-132 54-111 (182)
219 PLN02972 Histidyl-tRNA synthet 45.3 17 0.00037 42.6 3.1 47 323-370 419-470 (763)
220 TIGR00594 polc DNA-directed DN 44.7 40 0.00087 41.2 6.2 37 46-85 980-1021(1022)
221 PF02091 tRNA-synt_2e: Glycyl- 44.3 18 0.0004 36.7 2.7 59 475-557 119-177 (284)
222 PRK04036 DNA polymerase II sma 43.3 88 0.0019 35.1 8.3 61 46-109 152-215 (504)
223 cd00496 PheRS_alpha_core Pheny 42.6 17 0.00036 36.0 2.2 25 531-555 188-212 (218)
224 PRK06253 O-phosphoseryl-tRNA s 42.6 26 0.00055 39.3 3.8 49 323-371 210-260 (529)
225 PF00436 SSB: Single-strand bi 42.5 26 0.00056 29.7 3.1 49 81-129 50-104 (104)
226 PRK12293 hisZ ATP phosphoribos 42.2 17 0.00036 37.6 2.2 41 323-370 97-138 (281)
227 KOG2298 Glycyl-tRNA synthetase 41.9 6.1 0.00013 43.2 -1.1 30 167-196 47-77 (599)
228 PF03843 Slp: Outer membrane l 41.3 92 0.002 29.4 6.9 84 27-118 17-113 (160)
229 cd04452 S1_IF2_alpha S1_IF2_al 41.1 98 0.0021 24.4 6.2 48 51-105 6-59 (76)
230 cd05707 S1_Rrp5_repeat_sc11 S1 40.8 71 0.0015 24.9 5.2 46 51-105 3-54 (68)
231 COG1571 Predicted DNA-binding 40.7 1.1E+02 0.0023 33.5 8.0 72 47-130 266-342 (421)
232 cd04497 hPOT1_OB1_like hPOT1_O 40.4 2.9E+02 0.0062 25.1 10.9 96 30-132 4-106 (138)
233 cd05698 S1_Rrp5_repeat_hs6_sc5 39.5 70 0.0015 24.9 5.0 45 52-105 4-54 (70)
234 cd00733 GlyRS_alpha_core Class 38.7 22 0.00047 36.0 2.3 58 476-557 121-178 (279)
235 PRK00037 hisS histidyl-tRNA sy 38.5 28 0.00061 37.6 3.4 34 322-356 99-132 (412)
236 PRK09348 glyQ glycyl-tRNA synt 38.4 22 0.00048 36.0 2.2 58 476-557 125-182 (283)
237 PRK05733 single-stranded DNA-b 37.9 1.9E+02 0.0041 27.7 8.5 51 81-131 55-113 (172)
238 PF11736 DUF3299: Protein of u 37.2 3.5E+02 0.0075 25.2 10.1 81 43-127 51-143 (146)
239 cd00673 AlaRS_core Alanyl-tRNA 37.1 1.1E+02 0.0023 30.9 6.8 49 321-370 55-109 (232)
240 cd00769 PheRS_beta_core Phenyl 36.2 56 0.0012 31.6 4.7 26 171-196 4-29 (198)
241 cd04453 S1_RNase_E S1_RNase_E: 34.9 85 0.0019 26.4 5.0 48 51-105 10-66 (88)
242 PRK06253 O-phosphoseryl-tRNA s 34.8 38 0.00082 38.0 3.5 35 528-562 313-350 (529)
243 TIGR01405 polC_Gram_pos DNA po 33.4 2.9E+02 0.0063 34.7 11.1 79 46-129 6-91 (1213)
244 TIGR00388 glyQ glycyl-tRNA syn 31.6 31 0.00067 35.2 2.1 60 476-559 122-181 (293)
245 PRK06341 single-stranded DNA-b 31.2 2.6E+02 0.0056 26.7 8.1 51 81-131 55-116 (166)
246 cd05708 S1_Rrp5_repeat_sc12 S1 31.1 1.2E+02 0.0026 23.8 5.2 46 52-105 6-57 (77)
247 COG3689 Predicted membrane pro 30.3 2.6E+02 0.0055 28.7 8.2 86 42-133 170-263 (271)
248 cd04472 S1_PNPase S1_PNPase: P 30.3 1.7E+02 0.0037 22.2 5.8 46 51-105 3-54 (68)
249 PRK07274 single-stranded DNA-b 30.1 94 0.002 28.2 4.9 51 81-131 49-104 (131)
250 PRK08182 single-stranded DNA-b 29.9 97 0.0021 28.8 5.0 51 81-131 56-112 (148)
251 PRK06386 replication factor A; 29.7 3.9E+02 0.0084 28.8 10.0 81 30-127 3-89 (358)
252 PLN02530 histidine-tRNA ligase 29.7 47 0.001 37.1 3.3 33 323-356 166-198 (487)
253 KOG3416 Predicted nucleic acid 29.6 1.6E+02 0.0035 26.8 6.0 67 30-107 5-73 (134)
254 PRK09010 single-stranded DNA-b 29.3 91 0.002 30.0 4.8 51 81-131 56-115 (177)
255 PRK01584 alanyl-tRNA synthetas 28.8 34 0.00073 39.1 2.0 28 531-558 224-251 (594)
256 PF15513 DUF4651: Domain of un 28.3 63 0.0014 25.7 2.8 22 167-188 2-23 (62)
257 COG1098 VacB Predicted RNA bin 28.1 62 0.0013 29.3 3.1 64 51-125 8-75 (129)
258 cd05687 S1_RPS1_repeat_ec1_hs1 28.0 1.4E+02 0.003 23.3 5.0 46 51-105 3-54 (70)
259 TIGR00752 slp outer membrane l 27.9 2.3E+02 0.0049 27.5 7.2 81 42-129 43-142 (182)
260 TIGR03683 A-tRNA_syn_arch alan 27.8 24 0.00053 42.4 0.7 31 529-560 232-263 (902)
261 cd05689 S1_RPS1_repeat_ec4 S1_ 27.5 1.9E+02 0.0041 22.6 5.7 20 51-74 6-25 (72)
262 PF02721 DUF223: Domain of unk 26.9 1.8E+02 0.0038 24.6 5.7 63 70-133 2-69 (95)
263 COG2374 Predicted extracellula 26.8 3.3E+02 0.0072 32.0 9.3 83 26-112 193-282 (798)
264 TIGR00418 thrS threonyl-tRNA s 26.7 32 0.00069 39.0 1.4 44 323-369 284-332 (563)
265 COG0423 GRS1 Glycyl-tRNA synth 26.6 53 0.0011 36.8 2.9 31 323-356 189-223 (558)
266 PRK05813 single-stranded DNA-b 26.3 1.8E+02 0.0038 29.1 6.3 83 46-132 7-103 (219)
267 PF00575 S1: S1 RNA binding do 26.0 1.8E+02 0.0039 22.8 5.4 45 52-105 8-58 (74)
268 PF15490 Ten1_2: Telomere-capp 25.8 4.9E+02 0.011 23.4 11.6 86 30-129 8-96 (118)
269 cd05692 S1_RPS1_repeat_hs4 S1_ 25.5 2E+02 0.0043 21.7 5.5 46 51-105 3-54 (69)
270 PRK13902 alaS alanyl-tRNA synt 25.3 30 0.00064 41.7 0.8 31 529-560 228-259 (900)
271 COG0752 GlyQ Glycyl-tRNA synth 25.2 58 0.0012 32.9 2.6 61 476-560 126-186 (298)
272 cd05706 S1_Rrp5_repeat_sc10 S1 25.1 2.4E+02 0.0053 22.0 6.0 45 52-105 7-57 (73)
273 cd05690 S1_RPS1_repeat_ec5 S1_ 24.7 2.1E+02 0.0044 22.0 5.4 46 51-105 3-55 (69)
274 PF03459 TOBE: TOBE domain; I 24.6 3E+02 0.0065 20.9 6.3 51 51-105 6-56 (64)
275 cd04461 S1_Rrp5_repeat_hs8_sc7 23.7 1.6E+02 0.0035 23.9 4.8 49 46-105 14-68 (83)
276 cd05685 S1_Tex S1_Tex: The C-t 23.6 2.3E+02 0.0049 21.3 5.4 46 51-105 3-54 (68)
277 cd00673 AlaRS_core Alanyl-tRNA 22.2 52 0.0011 33.1 1.7 25 170-194 2-26 (232)
278 KOG1936 Histidyl-tRNA syntheta 22.2 71 0.0015 34.9 2.8 30 165-194 73-102 (518)
279 PRK08582 hypothetical protein; 22.1 2.5E+02 0.0055 25.7 6.2 61 52-125 9-75 (139)
280 cd04473 S1_RecJ_like S1_RecJ_l 22.0 3.2E+02 0.007 21.9 6.2 48 45-105 15-62 (77)
281 COG0173 AspS Aspartyl-tRNA syn 21.6 46 0.001 37.4 1.3 6 345-350 200-205 (585)
282 cd05703 S1_Rrp5_repeat_hs12_sc 21.4 1.9E+02 0.0042 23.1 4.7 46 51-105 3-56 (73)
283 PRK07772 single-stranded DNA-b 21.1 1.2E+02 0.0026 29.5 4.0 46 81-126 55-106 (186)
284 PRK00252 alaS alanyl-tRNA synt 20.6 50 0.0011 39.6 1.5 30 529-558 216-246 (865)
285 cd05691 S1_RPS1_repeat_ec6 S1_ 20.2 2.4E+02 0.0051 21.8 5.0 45 52-105 4-54 (73)
286 KOG1637 Threonyl-tRNA syntheta 20.1 78 0.0017 35.0 2.6 30 167-196 193-222 (560)
No 1
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=2.2e-118 Score=978.01 Aligned_cols=567 Identities=79% Similarity=1.295 Sum_probs=506.3
Q ss_pred CCCCCC-cccccccccCCcccc--cccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCC
Q 008405 1 MADNEL-PVDQVATMDLNDDAV--QRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC 77 (567)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~ 77 (567)
|.|.-. |.+|+|++.|-.|++ |-++++.+++|++|++..+.+..++|++|+|+|||+++|.+||++++||+|||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~ 80 (572)
T PLN02221 1 MGDEIVPPANQLAAVSLENDGSTVQKAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSC 80 (572)
T ss_pred CCCCCCChHHhhhheeccCCCcccccccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcc
Confidence 445444 467999999988873 34689999999999966555678999999999999999999953389999999995
Q ss_pred CceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCC--CCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhcccccc
Q 008405 78 PANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPF 155 (567)
Q Consensus 78 ~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~--~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~L 155 (567)
.+.||||++++.....+.|+.||+|.|+|+|+.++. ++++++||++++|+|+|+|.+.++|++.+.++.|++|+++||
T Consensus 81 ~g~iQvVv~~~~~~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hL 160 (572)
T PLN02221 81 PANLQVMVDSSLYDLSTLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHL 160 (572)
T ss_pred cccEEEEEcCchhhHHhcCCCceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchh
Confidence 456999998764323346899999999999998764 246799999999999999875689999888899999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHH
Q 008405 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA 235 (567)
Q Consensus 156 r~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (567)
|+|++.++++||+||.|+++||+||.++||+||+||+|++++||||+++|+|+|+.+........++.++.++..++||+
T Consensus 161 R~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (572)
T PLN02221 161 RSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAA 240 (572)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999875433333345677777788899999
Q ss_pred HHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHH
Q 008405 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVE 315 (567)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le 315 (567)
.+-|+|+|..++.++.++.|+|+..|..+++-.+++....++-.....|+++.+.|+..|+.+|||+++||+||||||||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e 320 (572)
T PLN02221 241 RLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVE 320 (572)
T ss_pred hhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhh
Q 008405 316 TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCI 395 (567)
Q Consensus 316 ~~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~ 395 (567)
+++++++|||+||||||||+++|+||||||||||+||+|.|++|+|+++|+||++++..+.++|.++++++.+.++...+
T Consensus 321 ~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~ 400 (572)
T PLN02221 321 TYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCI 400 (572)
T ss_pred HHHHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhh
Confidence 99889999999999999999999999999999999999999999999999999999999999988888877655544444
Q ss_pred hhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCc
Q 008405 396 NRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL 475 (567)
Q Consensus 396 ~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~ 475 (567)
+.++..+..||+||||.||++++.+....+.++.....||.+++.++|++|++.++.+|+||+|||..++||||+.++++
T Consensus 401 ~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~~~d~ 480 (572)
T PLN02221 401 DRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE 480 (572)
T ss_pred hhhhhccCCCceEEEHHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccCCCCC
Confidence 55555577899999999999999775433434444567999999999999988767899999999999999998877777
Q ss_pred ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008405 476 KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 476 ~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
..+++||||+||++||++|++|++|++.+++++++.|+++.+|+|||++++||+|||||||||||||+||++|.+|||||
T Consensus 481 ~~~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdv 560 (572)
T PLN02221 481 KTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDV 560 (572)
T ss_pred ceEEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheE
Confidence 88899999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 008405 556 IPFPRYPGRADL 567 (567)
Q Consensus 556 i~FPr~~~~~~~ 567 (567)
++|||+++||.+
T Consensus 561 i~FPR~~~~~~~ 572 (572)
T PLN02221 561 IPFPRYPGKADL 572 (572)
T ss_pred eecCCCcCcCCC
Confidence 999999999975
No 2
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=6.3e-111 Score=920.97 Aligned_cols=539 Identities=54% Similarity=0.947 Sum_probs=474.4
Q ss_pred cccccceeehhhccCCCCCCCCCCCEEEEEEEEEee--------------------------------------------
Q 008405 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG-------------------------------------------- 59 (567)
Q Consensus 24 ~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i-------------------------------------------- 59 (567)
..|+.|+..+.|+++.|-+...+|++|.|.|||++-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (633)
T PLN02532 24 SKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFRS 103 (633)
T ss_pred hhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHHH
Confidence 458999999999999888899999999999999752
Q ss_pred --------------------------eecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCC
Q 008405 60 --------------------------REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE 113 (567)
Q Consensus 60 --------------------------R~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~ 113 (567)
|.+| +++||+|||++|.++||||++++.......|+.|++|.|+|+|+.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g--~i~FI~LrDGSg~~~lQvVv~~~~~~~~~~L~~Es~V~V~G~V~~~~~ 181 (633)
T PLN02532 104 IAKVLSGGGSTYPVREKTEIAIQKSAPPPP--SVAYLLISDGSCVASLQVVVDSALAPLTQLMATGTCILAEGVLKLPLP 181 (633)
T ss_pred HHHHHcCCCCCCCcccccccccccccccCC--CcEEEEEECCCCccceEEEEeCCcccHhhcCCCceEEEEEEEEEecCC
Confidence 6677 799999999999888999998764333357899999999999998842
Q ss_pred -CCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCe
Q 008405 114 -GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPI 192 (567)
Q Consensus 114 -~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPi 192 (567)
..+|++||.+++|+||+++.+.+||++++.+++|++|++||||+|++.++++||+||.|++++|+||+++||+||+||+
T Consensus 182 ~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPi 261 (633)
T PLN02532 182 AQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPI 261 (633)
T ss_pred CCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCe
Confidence 3578999999999999998656899998888999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHH
Q 008405 193 ITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKEN 272 (567)
Q Consensus 193 L~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (567)
|++++||||++.|+|+|+..+.+......+.++. .....+++++.+.+++-.+..+..+..|.||..|..+++.+.++-
T Consensus 262 LT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (633)
T PLN02532 262 ITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHET-EGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQL 340 (633)
T ss_pred ecccCCCccccccceecccccccccccccccccc-ccccchhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 9999999999999999875332221112222222 233456778889999888888999999999999998888876555
Q ss_pred HHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCccccccceeee
Q 008405 273 LAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEM 352 (567)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~ 352 (567)
...+.-.-...+..+.+.++..|+.+|||+++||+||||||||+++++|+|||+||||||||+++|+|||+||||||+|+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Em 420 (633)
T PLN02532 341 ASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEM 420 (633)
T ss_pred cccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeeee
Confidence 55555555666777788899999999999999999999999999989999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCccccccc
Q 008405 353 AFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKV 432 (567)
Q Consensus 353 a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~ 432 (567)
+|.|++|+|+++|+||+++++.++++|.+++++++...+...+++++..+..||+||||.||+++|.+.. +.++....
T Consensus 421 af~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~--~~~~e~~~ 498 (633)
T PLN02532 421 AFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQAT--DKKFETKP 498 (633)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhc--CCCccccc
Confidence 9999999999999999999999999998888887665554445666666788999999999999997531 23455567
Q ss_pred ccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcC
Q 008405 433 EWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMG 512 (567)
Q Consensus 433 ~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g 512 (567)
+||.||..++|++|++.++.+|+||+|||..++||||+.++|+..+++||||+|+++||++|++|+||++.+++++++.|
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~G 578 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELG 578 (633)
T ss_pred ccCCccChHHHHHHHHHHcCCCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcC
Confidence 89999999999999987779999999999999999999888888999999999988899999999999999999999999
Q ss_pred CCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008405 513 LPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 513 ~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
++++.|+|||++++||+|||||||||||||+|||||++|||||++|||++|+|..
T Consensus 579 ld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~~ 633 (633)
T PLN02532 579 LPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKANN 633 (633)
T ss_pred CChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCCC
Confidence 9999999999999999999999999999999999999999999999999999963
No 3
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.5e-109 Score=908.50 Aligned_cols=472 Identities=56% Similarity=0.967 Sum_probs=420.1
Q ss_pred ccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccc----cCCCCCc
Q 008405 25 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG----QLVPTGT 100 (567)
Q Consensus 25 ~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~----~~l~~gs 100 (567)
.++.++.|+++.+..+.+..+.|++|+|+|||+++|.+| +++|++|+|+++..+||||++++...+. ..|+.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g--~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs 162 (565)
T PLN02603 85 EFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGA 162 (565)
T ss_pred ccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCC--CeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCC
Confidence 346788999998433334678899999999999999999 7999999999986789999987643321 2489999
Q ss_pred EEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhh
Q 008405 101 CVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFL 180 (567)
Q Consensus 101 ~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl 180 (567)
+|.|+|+|+.++. .++.+||++++++++++|+ .++|++++.++.+++|..+|||+|++.++++||+||+|++++|+||
T Consensus 163 ~V~V~G~v~~~~~-~~~~~EL~v~~i~vlg~a~-~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff 240 (565)
T PLN02603 163 SVLVQGTVVSSQG-GKQKVELKVSKIVVVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 240 (565)
T ss_pred EEEEEEEEEecCC-CCccEEEEEeEEEEEECCC-CCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999874 4677999999999999997 4899998888999999999999999999999999999999999999
Q ss_pred hcCCcEEEecCeeecCCCCCCCccceeeeccccchh----hhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccch
Q 008405 181 QKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK----LEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGR 256 (567)
Q Consensus 181 ~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
+++||+||+||+|++++||||+++|.|+|+....++ ..+++||+|.
T Consensus 241 ~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~------------------------------ 290 (565)
T PLN02603 241 QENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKD------------------------------ 290 (565)
T ss_pred HHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcc------------------------------
Confidence 999999999999999999999999999986532211 2244555443
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCC
Q 008405 257 EAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHS 336 (567)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~ 336 (567)
|..+|+.+|||+++||+||||||+|+++++++|||+||||||||++
T Consensus 291 ----------------------------------~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s 336 (565)
T PLN02603 291 ----------------------------------GLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENS 336 (565)
T ss_pred ----------------------------------cccccchhhhCcceeeccCchHHHHHHHhcccceEEEecceeCCCC
Confidence 3345778999999999999999999999999999999999999999
Q ss_pred CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHH
Q 008405 337 HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE 416 (567)
Q Consensus 337 ~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~ 416 (567)
+|+|||+||||||+|++|+|++|+|+++|++|+++++.++++|.++++++........++.++..+..||+||||.||++
T Consensus 337 ~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~ 416 (565)
T PLN02603 337 NTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIE 416 (565)
T ss_pred CCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999998888887765555556666666778999999999999
Q ss_pred HHHHHHHcCcccccccccccccchhHHhhhcccccc-CcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecch
Q 008405 417 LLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQ-KPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGS 495 (567)
Q Consensus 417 ~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~-~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~ 495 (567)
+|.+. +.+++...+||.+|..++|++|++.+++ +|+||+|||+.++||||+.++|++++++|||++|+++||+||+
T Consensus 417 iL~~~---~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDLl~p~~gEl~gGs 493 (565)
T PLN02603 417 LLLKA---KKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGS 493 (565)
T ss_pred HHHHh---ccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEEEecCceEecCHH
Confidence 99764 2335556789999999999999987764 7999999999999999988878889999999999999999999
Q ss_pred hhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008405 496 QREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 496 ~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
||+||++++.++++++|++++.|+|||++++||+|||||||||||||+|++||++|||||++|||++|+|++
T Consensus 494 qRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g~~~~ 565 (565)
T PLN02603 494 QREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPGSAEF 565 (565)
T ss_pred HHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=4.7e-107 Score=886.82 Aligned_cols=511 Identities=48% Similarity=0.845 Sum_probs=417.5
Q ss_pred ccceeehhhccCC-------CC--CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc--ccC
Q 008405 27 SDRVLIKSILTRP-------DG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL--GQL 95 (567)
Q Consensus 27 ~~r~~i~~i~~~~-------~~--~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~--~~~ 95 (567)
..|+.|..+++.+ +. ...++|++|+|+|||+++|++|+++++|++|||++|..+||||++++...+ ...
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~ 131 (586)
T PTZ00425 52 RSRIRICNVLNVPKSEKEFNDNSRKNKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK 131 (586)
T ss_pred ccceeeehhccCccccccccccccccccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc
Confidence 3478888887631 11 135679999999999999999953499999999998778999997653222 246
Q ss_pred CCCCcEEEEEeEEeCCCCC-------CcceeEEEE-----eEEEEecCC-CCCCCCCCCcCCChhhhccccccccCcHHH
Q 008405 96 VPTGTCVYVEGMLKNPPEG-------TKQKIELRV-----QKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTI 162 (567)
Q Consensus 96 l~~gs~V~V~G~v~~~~~~-------~~~~lEl~~-----~~i~vls~~-~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~ 162 (567)
|+.|++|.|+|+|+.++.. .++++||.+ ++++|++.+ ++.+||++++.++.|++|++||||+|++.+
T Consensus 132 l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~ 211 (586)
T PTZ00425 132 CGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFI 211 (586)
T ss_pred CCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHH
Confidence 8999999999999987632 146799998 799999988 456799999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 008405 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (567)
Q Consensus 163 ~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (567)
+++||+||.+..++|+||+++||+||+||+|++++||||+++|.|+|+.++..+ .|++|..--
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~-~~~~p~~~~---------------- 274 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDAD-YRAIPRVNK---------------- 274 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccc-ccccccccc----------------
Confidence 999999999999999999999999999999999999999999999997643211 244442100
Q ss_pred hhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCC
Q 008405 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVS 322 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~ 322 (567)
.+.+. |-++.+...-.+...+..+..-.....|+++.. +...++.+||++++||+||||||+|++++|++
T Consensus 275 -~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~-~~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~ 344 (586)
T PTZ00425 275 -KNKKG--------EKREDILNTCNANNNNGNSSSSNAVSSPAYPDQ-YLIDYKKDFFSKQAFLTVSGQLSLENLCSSMG 344 (586)
T ss_pred -ccccc--------ccccccccccccccccccccccccccccccccc-ccccccccccCcceEEEcCchHHHHHHHhccC
Confidence 00000 001111100111100111111122234555533 24567789999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhcc
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 402 (567)
|||+||||||||+++|+||++||||||+|++|.|++++|+++|++|++++..+++.+..++++++.......++.++..+
T Consensus 345 rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~ 424 (586)
T PTZ00425 345 DVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNIL 424 (586)
T ss_pred CEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998888888765433333445555556
Q ss_pred CCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCcceEEEEE
Q 008405 403 STPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMD 482 (567)
Q Consensus 403 ~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fD 482 (567)
..||+||||.||++++.+.. .++....+||.+|..++|++|++.++.+|+||+|||+.++||||+.++|+..+++||
T Consensus 425 ~~pf~rIty~EAi~iL~~~~---~~~~~~~~~G~dL~~e~Er~L~~~~~~~PvFItdyP~~~kPFY~~~~~d~~~v~~fD 501 (586)
T PTZ00425 425 DEDFAKITYTNVIDLLQPYS---DSFEVPVKWGMDLQSEHERFVAEQIFKKPVIVYNYPKDLKAFYMKLNEDQKTVAAMD 501 (586)
T ss_pred CCCCCcCCHHHHHHHHHHhH---HhcCCCCCcccccchHHHHHHHHHhcCCcEEEECCccccCccccCcCCCCCeEEEEe
Confidence 78999999999999997642 223345789999999999999986568999999999999999998877778899999
Q ss_pred eeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCC
Q 008405 483 VLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYP 562 (567)
Q Consensus 483 L~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~ 562 (567)
|++||++||++|++|+++++.+.+++++.|++++.|+|||++++||+|||||||||||||+||+||++|||||++|||++
T Consensus 502 LlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~ 581 (586)
T PTZ00425 502 VLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYP 581 (586)
T ss_pred EEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCC
Confidence 99998789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 008405 563 GRADL 567 (567)
Q Consensus 563 ~~~~~ 567 (567)
|+|.+
T Consensus 582 g~~~~ 586 (586)
T PTZ00425 582 GHAEF 586 (586)
T ss_pred CcCCC
Confidence 99975
No 5
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-107 Score=850.05 Aligned_cols=427 Identities=48% Similarity=0.845 Sum_probs=387.7
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc--cc-c-ccCCCCCcEE
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--AD-L-GQLVPTGTCV 102 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~--~~-~-~~~l~~gs~V 102 (567)
.++++|+|+.. ...+++|+|+|||+++|.+| +++||.|||++|. ||+|++++. .+ + .+.|+.||+|
T Consensus 2 ~~~~~i~di~~------~~~~~~V~v~GWV~~~R~~g--~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~~~~L~~es~v 71 (435)
T COG0017 2 MKRTYIKDIKP------HVGGQEVTVRGWVHNKRDLG--KIIFLVLRDGSGF--IQAVVPKNKVYEELFKAKKLTLESSV 71 (435)
T ss_pred CceeeHHhhhc------cCCCcEEEEEEEeeeecccC--CeEEEEEEcCCcE--EEEEEECCCCcHHHhhhhcCCCccEE
Confidence 46889999983 23349999999999999999 7999999999987 999998642 11 2 3579999999
Q ss_pred EEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC-hhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhh
Q 008405 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT-LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQ 181 (567)
Q Consensus 103 ~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~-~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~ 181 (567)
.|+|+|++++. +++++||++++|+|++.++ .++||+++.++ +|+++++||||+|++..+++|++||.|++++|+||.
T Consensus 72 ~V~G~v~~~~~-a~~g~El~v~~i~Vl~~a~-~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~ 149 (435)
T COG0017 72 VVTGIVKASPK-APQGFELQVEKIEVLGEAD-PPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFY 149 (435)
T ss_pred EEEEEEEcCCC-CCCCEEEEEEEEEEeeccC-CCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHH
Confidence 99999999994 7899999999999999996 48999999986 999999999999999999999999999999999999
Q ss_pred cCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhh
Q 008405 182 KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISA 261 (567)
Q Consensus 182 ~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (567)
++||+||+||+|+++++|||+++|.|
T Consensus 150 ~~gF~eV~tP~i~~~~~EGg~elF~v------------------------------------------------------ 175 (435)
T COG0017 150 ENGFTEVHTPIITASATEGGGELFKV------------------------------------------------------ 175 (435)
T ss_pred hCCcEEecCceEeccCCCCCceeEEE------------------------------------------------------
Confidence 99999999999999999999998765
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCC
Q 008405 262 SVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRH 341 (567)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rH 341 (567)
+||++++||+||||||+|+++++++|||+|||+||+|+++|+||
T Consensus 176 ------------------------------------~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RH 219 (435)
T COG0017 176 ------------------------------------DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRH 219 (435)
T ss_pred ------------------------------------eecCcceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcch
Confidence 48999999999999999999888999999999999999999999
Q ss_pred ccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHH
Q 008405 342 LAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVA 421 (567)
Q Consensus 342 lpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~ 421 (567)
++||||+|.||+|++++|+|+++|+||+++++.++++|..+++++++ +...+. ...+.||+||||.||+++|.+.
T Consensus 220 L~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~---~~~~~pf~ritY~eAieiL~~~ 294 (435)
T COG0017 220 LSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELK---RPESAPFPRITYKEAIEILEEK 294 (435)
T ss_pred hhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhc---ccccCCccEEEHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988764 111111 1115789999999999999743
Q ss_pred HHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCc-ceEEEEEeeeCCeeEeecchhhhhc
Q 008405 422 VKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL-KTVAAMDVLVPKVGELIGGSQREER 500 (567)
Q Consensus 422 ~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~-~~~~~fDL~~~~~~El~~G~~r~~~ 500 (567)
+ ++. .+||.||.+++|++|++.....|+||+|||..++||||+.++|+ .++.+|||++|+++||+||+||+|+
T Consensus 295 ---~--~e~-~~~GdDl~~e~Er~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~ 368 (435)
T COG0017 295 ---G--FEK-VEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHD 368 (435)
T ss_pred ---C--Ccc-cCCCCccCCHHHHHHHHHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceecccc
Confidence 2 222 78999999999999998765567999999999999999977654 8999999999988999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 501 YDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 501 ~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
++.|.+++++.|++++.|+|||++++||+|||||||||+|||+|++||++|||||+||||+++||.
T Consensus 369 ~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~ 434 (435)
T COG0017 369 YDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLY 434 (435)
T ss_pred HHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 6
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=2.6e-101 Score=833.37 Aligned_cols=447 Identities=51% Similarity=0.914 Sum_probs=392.6
Q ss_pred eehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc----ccccCCCCCcEEEEEe
Q 008405 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVEG 106 (567)
Q Consensus 31 ~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~----~~~~~l~~gs~V~V~G 106 (567)
+|++++. ....+.|++|+|+|||+++|.+| +++|++|||+++.+.||||++++.. ...+.|+.||+|.|+|
T Consensus 3 ~~~~~~~---~~~~~~g~~v~v~Gwv~~~R~~~--~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQ---QVYKFVGDEVTVSGWVRTKRSSK--KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTG 77 (453)
T ss_pred cHHHHHh---cchhcCCCEEEEEEEeEEEEcCC--CeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEE
Confidence 4566663 12367899999999999999888 7999999999843459999987631 1345799999999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcE
Q 008405 107 MLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 186 (567)
Q Consensus 107 ~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~ 186 (567)
+|.+++ +.++++||.+++++|+|+|.+..+|++.+.++.++++++||||+|++..+++|++||.|++++|+||.++||+
T Consensus 78 ~v~~~~-~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~ 156 (453)
T TIGR00457 78 KVVESP-GKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFT 156 (453)
T ss_pred EEEcCC-CCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 999876 4568999999999999998645789988888889999999999999999999999999999999999999999
Q ss_pred EEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHH
Q 008405 187 YIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTEL 266 (567)
Q Consensus 187 EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (567)
||+||+|++++|||+++.|.+.+..
T Consensus 157 eV~TP~l~~~~~eg~~~~F~v~~~~------------------------------------------------------- 181 (453)
T TIGR00457 157 WVSPPILTSNDCEGAGELFRVSTDG------------------------------------------------------- 181 (453)
T ss_pred EecCCeEeecCCCCCCCceEecccc-------------------------------------------------------
Confidence 9999999999999999998775310
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCccccc
Q 008405 267 TKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFW 346 (567)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlpEFt 346 (567)
..+..+||++++||++|||||||++++|++||||||||||||+++++|||||||
T Consensus 182 --------------------------~~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt 235 (453)
T TIGR00457 182 --------------------------IDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFW 235 (453)
T ss_pred --------------------------cccchhccCCccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhc
Confidence 012346999999999999999999988999999999999999998899999999
Q ss_pred cceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCc
Q 008405 347 MVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGK 426 (567)
Q Consensus 347 mLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~ 426 (567)
|||||++|+|++++|+++|+||++++..+.+.+..+++.+...+....+..+......||+||||.||++++++. +.
T Consensus 236 ~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~---~~ 312 (453)
T TIGR00457 236 MIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKES---DK 312 (453)
T ss_pred cceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhc---CC
Confidence 999999999999999999999999999999887777776655444433444555567899999999999998764 23
Q ss_pred ccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHH
Q 008405 427 HFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKS 506 (567)
Q Consensus 427 ~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~ 506 (567)
.+.....||.+|..++|++|++.++.+|+||+|||.+++|||++.++++.++++||||+||.+||+||+||+++++++.+
T Consensus 313 ~~~~~~~~g~~l~~~~e~~L~~~~~~~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~ 392 (453)
T TIGR00457 313 NFEYEDFWGDDLQTEHERFLAEEYFKPPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLEN 392 (453)
T ss_pred CCcCCCCCCCCCCcHHHHHHHHHhCCCCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHH
Confidence 33445568989999999999988778899999999999999987666778999999999876899999999999999999
Q ss_pred HHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008405 507 RIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 507 ~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||+++||..
T Consensus 393 ~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~p 453 (453)
T TIGR00457 393 RMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453 (453)
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999973
No 7
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.8e-100 Score=826.08 Aligned_cols=445 Identities=57% Similarity=0.974 Sum_probs=390.9
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc--c--ccccCCCCCcEEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--A--DLGQLVPTGTCVY 103 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~--~--~~~~~l~~gs~V~ 103 (567)
.+++|++++. ..+.|++|+|+|||+++|.+| |++|++|||++|. +|+++..+. . ++.+.|+.||+|.
T Consensus 2 ~~~~~~~~~~-----~~~~~~~V~i~G~v~~~R~~g--~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~l~~~s~v~ 72 (450)
T PRK03932 2 MRVSIKDILK-----GKYVGQEVTVRGWVRTKRDSG--KIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKKLTTGSSVI 72 (450)
T ss_pred CcEEHHHhcc-----cccCCCEEEEEEEEEEEEeCC--CeEEEEEECCCCc--EEEEEEcCCChHHHHHHhcCCCCcEEE
Confidence 3567888862 467899999999999999998 7999999999875 888876542 1 1345699999999
Q ss_pred EEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcC
Q 008405 104 VEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183 (567)
Q Consensus 104 V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~ 183 (567)
|+|++..++. +++++||++++++||+++. .++|++.+.+++++++++||||+|++.++++|++||.|++++|+||.++
T Consensus 73 v~G~v~~~~~-~~~~~el~~~~i~vl~~~~-~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~ 150 (450)
T PRK03932 73 VTGTVVESPR-AGQGYELQATKIEVIGEDP-EDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNEN 150 (450)
T ss_pred EEEEEEcCCC-CCCCEEEEEEEEEEccCCC-CCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999874 5679999999999999975 5789998888899999999999999999999999999999999999999
Q ss_pred CcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhH
Q 008405 184 GFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASV 263 (567)
Q Consensus 184 gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (567)
||+||+||+|++++|||+++.|.++++.+
T Consensus 151 gf~EV~TP~L~~~~~eg~~~~F~v~~~~~--------------------------------------------------- 179 (450)
T PRK03932 151 GFVWVDTPIITASDCEGAGELFRVTTLDL--------------------------------------------------- 179 (450)
T ss_pred CCEEecCCceeccCCCCCCCceEeecccc---------------------------------------------------
Confidence 99999999999999999999998865311
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCcc
Q 008405 264 TELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlp 343 (567)
..+.+|||+++||++|||+|||++++|++||||||||||||+++|+||||
T Consensus 180 ------------------------------~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~ 229 (450)
T PRK03932 180 ------------------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLA 229 (450)
T ss_pred ------------------------------cccccccCCCcccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccc
Confidence 01235999999999999999999988999999999999999999999999
Q ss_pred ccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHH
Q 008405 344 EFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVK 423 (567)
Q Consensus 344 EFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~ 423 (567)
||||||||++|.|++++|+++|+||+.++..+.+.+..++++++...+.+..+.++..++.||+||||.||++++...
T Consensus 230 EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~-- 307 (450)
T PRK03932 230 EFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKS-- 307 (450)
T ss_pred cccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHc--
Confidence 999999999999999999999999999999999888777877765443333333333356899999999999988642
Q ss_pred cCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHH
Q 008405 424 EGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDV 503 (567)
Q Consensus 424 ~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~ 503 (567)
+.++.....||.++..++|++|.++.+.+|+||+|||.+++|||++.++++.++++|||++||++||+||+||++++++
T Consensus 308 -~~~~~~~~~~g~~l~~~~e~~l~~~~~~~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~ 386 (450)
T PRK03932 308 -GKKFEFPVEWGDDLGSEHERYLAEEHFKKPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDV 386 (450)
T ss_pred -CCCcCCCCCcccccChHHHHHHHHHhcCCcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHH
Confidence 3334334578999999999999986678999999999999999977655558999999999988999999999999999
Q ss_pred HHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008405 504 IKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 504 l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
+.+++++.|++++.++||+++++||||||||||||||||+||+||.+|||||++|||+++||..
T Consensus 387 l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~p 450 (450)
T PRK03932 387 LEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450 (450)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999963
No 8
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-101 Score=778.86 Aligned_cols=442 Identities=61% Similarity=1.033 Sum_probs=410.3
Q ss_pred eehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeC
Q 008405 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN 110 (567)
Q Consensus 31 ~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~ 110 (567)
.+.+++...+++....|++++|.|||+++|..| +++|++|.||++.++||||+++. ..+.+..|++|.|+|.+..
T Consensus 4 ~~~~v~~~~~~~~~~~g~~~~i~GWvKsvr~~~--~~~Fl~i~DGs~~~~lQvVv~~~---~~q~la~Gt~i~~~g~l~~ 78 (446)
T KOG0554|consen 4 RSLSVLSGRILGHPRAGDTISIGGWVKSVRKLK--KVTFLDINDGSCPSPLQVVVDSE---QSQLLATGTCISAEGVLKV 78 (446)
T ss_pred eeeeeeccccccCCCCCCceeecchhhhccccc--ceEEEEecCCCCCcceEEEechH---HhhhccccceEEEEeeEEe
Confidence 344444434456677899999999999999999 79999999999999999999984 3678999999999999988
Q ss_pred CCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEec
Q 008405 111 PPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHT 190 (567)
Q Consensus 111 ~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeT 190 (567)
++ +.++++|+.+++|.+++.+++ .||++++++++|++|+.+|||.|++...+++|+||.+..++|+||++++|++|+|
T Consensus 79 ~~-~~~q~iel~~eki~~vG~v~~-~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~t 156 (446)
T KOG0554|consen 79 SK-GAKQQIELNAEKIKVVGTVDE-SYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINT 156 (446)
T ss_pred cc-chheeeeeeeeEEEEEeecCC-CCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecC
Confidence 85 678999999999999999984 4999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHH
Q 008405 191 PIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAK 270 (567)
Q Consensus 191 PiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (567)
|+||.++||||+|.|.|+|..
T Consensus 157 PiiTt~DCEGaGE~F~vtt~~----------------------------------------------------------- 177 (446)
T KOG0554|consen 157 PIITTNDCEGAGEVFQVTTLT----------------------------------------------------------- 177 (446)
T ss_pred cEeeccCCCCCcceEEEEecC-----------------------------------------------------------
Confidence 999999999999999999742
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCcccccccee
Q 008405 271 ENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350 (567)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~ 350 (567)
+++.+|||+++||++|+|||+|.+++++.|||.+||+||+|+++++|||.||||+|.
T Consensus 178 -----------------------d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEa 234 (446)
T KOG0554|consen 178 -----------------------DYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEA 234 (446)
T ss_pred -----------------------cccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhh
Confidence 134579999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC-HHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccc
Q 008405 351 EMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFE 429 (567)
Q Consensus 351 e~a~~d-~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~ 429 (567)
|++|++ ++++|+++|.+++++++.++++|.+++++..++..+..+.+++..+..+|.+|||.||+++|.+... +.|.
T Consensus 235 E~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t--~~fk 312 (446)
T KOG0554|consen 235 ELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVT--KKFK 312 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcc--cccc
Confidence 999998 9999999999999999999999999999988888888888888888889999999999999976531 4577
Q ss_pred cccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH
Q 008405 430 NKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE 509 (567)
Q Consensus 430 ~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~ 509 (567)
.+++||.+|++++|++|++..++.|+||+|||+.++||||+.++++.++++|||++|+.|||+|||+|+.| .++++
T Consensus 313 ~~~kwG~~l~~ehe~yL~~~~~~~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~l~ 388 (446)
T KOG0554|consen 313 TPPKWGIDLSTEHEKYLVEECFKKPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER----KARLK 388 (446)
T ss_pred cCcccccccchhhHHHHHHHhcCCCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh----HHHHH
Confidence 88999999999999999998889999999999999999999998888999999999999999999999988 55778
Q ss_pred HcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008405 510 DMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 510 ~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
+.|..+++|+|||+.++||.+||||||||+||++.+++|.+||||||||||.++.|.+
T Consensus 389 e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 389 ERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred hcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999864
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=5e-96 Score=788.38 Aligned_cols=411 Identities=30% Similarity=0.493 Sum_probs=362.2
Q ss_pred CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-----ccccCCCCCcEEEEEeEEeCCCCCCc
Q 008405 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTCVYVEGMLKNPPEGTK 116 (567)
Q Consensus 42 ~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-----~~~~~l~~gs~V~V~G~v~~~~~~~~ 116 (567)
+.++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++.. ++...|+.||+|.|+|+|+.++. ..
T Consensus 7 ~~~~~g~~v~i~G~v~~~R~~g--~~~Fi~lrd~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~-~~ 81 (428)
T TIGR00458 7 KPEMDGQEVTFMGWVHEIRDLG--GLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKEK-AP 81 (428)
T ss_pred chhhCCCEEEEEEEEEEEecCC--CcEEEEEEeCCee--EEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecCC-CC
Confidence 3467899999999999999999 7999999999875 9999986531 13456999999999999998763 56
Q ss_pred ceeEEEEeEEEEecCCCCCCCCCCCcCC---ChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCee
Q 008405 117 QKIELRVQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPII 193 (567)
Q Consensus 117 ~~lEl~~~~i~vls~~~~~~~Pi~~~~~---~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL 193 (567)
+++||.+++++|+|+|. .++|++.+.. +.+++.++||||+|++..+++|++||.|++++|+||.++||+||+||+|
T Consensus 82 ~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L 160 (428)
T TIGR00458 82 GGFEIIPTKIEVINEAK-EPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKL 160 (428)
T ss_pred CcEEEEEeEEEEEecCC-CCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCce
Confidence 89999999999999985 5678766542 4667778999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHH
Q 008405 194 TTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENL 273 (567)
Q Consensus 194 ~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (567)
++++|||+++.|.+
T Consensus 161 ~~~~~eg~~~~f~v------------------------------------------------------------------ 174 (428)
T TIGR00458 161 VASATEGGTELFPI------------------------------------------------------------------ 174 (428)
T ss_pred ecCCCCCCcceeee------------------------------------------------------------------
Confidence 99999999997654
Q ss_pred HHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCCCCCCccccccceeee
Q 008405 274 AKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEM 352 (567)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~ 352 (567)
+||++++||++|||+|||++ ++|++||||||||||||+++++||||||||||||+
T Consensus 175 ------------------------~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~ 230 (428)
T TIGR00458 175 ------------------------TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEM 230 (428)
T ss_pred ------------------------EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeee
Confidence 37899999999999999985 67899999999999999998889999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCccccccc
Q 008405 353 AFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKV 432 (567)
Q Consensus 353 a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~ 432 (567)
+|.|++++|+++|+||++++..+.+++..+++.++..+ .....||+||||.||++++++. + ...
T Consensus 231 a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~---------~~~~~pf~rity~eA~~~l~~~---g----~~~ 294 (428)
T TIGR00458 231 AFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKL---------EKPEGKFVRLTYDEAIEMANAK---G----VEI 294 (428)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhccccc---------ccCCCCceEEEHHHHHHHHHHc---C----CCC
Confidence 99999999999999999999999988765554332211 0135799999999999988542 2 234
Q ss_pred ccccccchhHHhhhccccccCcEEEecCCCCCccccccc-cCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHc
Q 008405 433 EWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM 511 (567)
Q Consensus 433 ~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~-~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~ 511 (567)
.||.++..++|++|++. ++.|+||+|||.+++|||++. +++++++++||||++ |+||+||++|+++++++++++++.
T Consensus 295 ~~~~~l~~~~E~~l~~~-~~~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~-g~Ei~~g~~r~~~~~~l~~~~~~~ 372 (428)
T TIGR00458 295 GWGEDLSTEAEKALGEE-MDGLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYR-DLEISSGAQRIHLHDLLVERIKAK 372 (428)
T ss_pred CCccccchHHHHHHHHH-hCCCEEEEeCchhcCcccccccCCCCCEEEEEEEEeC-CeEEeeCchhcCCHHHHHHHHHHc
Confidence 67888999999999864 589999999999999999764 455689999999995 679999999999999999999999
Q ss_pred CCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 512 GLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 512 g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
|++++.|+|||+|++||||||||||||||||+|++||.+|||||++|||+++||.
T Consensus 373 g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~ 427 (428)
T TIGR00458 373 GLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLT 427 (428)
T ss_pred CCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999985
No 10
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-95 Score=788.32 Aligned_cols=420 Identities=33% Similarity=0.571 Sum_probs=367.6
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc----cccccCCCCCcEEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV----ADLGQLVPTGTCVY 103 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~----~~~~~~l~~gs~V~ 103 (567)
++++|+++. ....|++|+|+|||+++|.+| +++|++|||++|. ||+|++++. .++.+.|+.||+|.
T Consensus 3 ~~~~~~~l~------~~~~g~~V~i~GrV~~~R~~g--k~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELT------PELDGEEVTLAGWVHEIRDLG--GIAFLILRDRSGI--IQVVVKKKVDEELFETIKKLKRESVVS 72 (437)
T ss_pred ceeEhhhCC------hhhCCCEEEEEEEeEeeecCC--CeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhCCCCCcEEE
Confidence 678888876 367899999999999999999 7999999999874 999998753 12346799999999
Q ss_pred EEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCc---CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhh
Q 008405 104 VEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT---KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFL 180 (567)
Q Consensus 104 V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~---~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl 180 (567)
|+|+|.+++. ..+++||++++|+|+|+|. .++|+... ..+.++++++||||+|++.++++|++||.|++++|+||
T Consensus 73 v~G~v~~~~~-~~~~~el~~~~i~vls~a~-~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff 150 (437)
T PRK05159 73 VTGTVKANPK-APGGVEVIPEEIEVLNKAE-EPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFL 150 (437)
T ss_pred EEEEEEcCCC-CCCCEEEEEeEEEEEeCCC-CCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999874 5678999999999999986 45776432 23578888999999999999999999999999999999
Q ss_pred hcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhh
Q 008405 181 QKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAIS 260 (567)
Q Consensus 181 ~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
.++||+||+||+|++++|||+++.|++
T Consensus 151 ~~~gf~EV~TP~L~~~~~eg~~~~f~~----------------------------------------------------- 177 (437)
T PRK05159 151 YENGFTEIFTPKIVASGTEGGAELFPI----------------------------------------------------- 177 (437)
T ss_pred HHCCCEEEeCCcccccCCCCCcceEeE-----------------------------------------------------
Confidence 999999999999999999999986643
Q ss_pred hhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHh-hcCCcEEEEecccccCCCCCC
Q 008405 261 ASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSHTS 339 (567)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~-~~~~rVFeI~~~FR~E~~~t~ 339 (567)
+||++++||++|||+|||+++ +|++||||||||||||+++++
T Consensus 178 -------------------------------------~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~ 220 (437)
T PRK05159 178 -------------------------------------DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTS 220 (437)
T ss_pred -------------------------------------EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCc
Confidence 378999999999999999976 559999999999999999888
Q ss_pred CCccccccceeeeccCC-HHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHH
Q 008405 340 RHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELL 418 (567)
Q Consensus 340 rHlpEFtmLE~e~a~~d-~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l 418 (567)
||||||||||||++|.| ++++|+++|+||+.++..+.+++..++.+++..++ ..+.||+||||.||++++
T Consensus 221 rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~---------~~~~~f~rit~~eA~~~l 291 (437)
T PRK05159 221 RHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP---------VPETPIPRITYDEAIEIL 291 (437)
T ss_pred ccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC---------cCCCCceEeEHHHHHHHH
Confidence 99999999999999998 99999999999999999998877666655443211 245799999999999998
Q ss_pred HHHHHcCcccccccccccccchhHHhhhcccc---cc-CcEEEecCCCCCcccccccc-CCcceEEEEEeeeCCeeEeec
Q 008405 419 EVAVKEGKHFENKVEWGIDLASEHERYLTEVK---FQ-KPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPKVGELIG 493 (567)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~---~~-~p~fI~~yP~~~~pf~~~~~-~d~~~~~~fDL~~~~~~El~~ 493 (567)
.+. + ....||.+++.++|+.|++.+ +. .|+||+|||..++|||++.+ ++++++++||||++ |.||+|
T Consensus 292 ~~~---~----~~~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~-g~Ei~~ 363 (437)
T PRK05159 292 KSK---G----NEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFR-GLEITS 363 (437)
T ss_pred HHc---C----CCCCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEEC-CEEEee
Confidence 652 2 234578889989999886543 22 38999999999999998754 45678999999996 569999
Q ss_pred chhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 494 GSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 494 G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
|++|+++++++.++++++|++++.|+|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 364 g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 364 GGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLT 436 (437)
T ss_pred CeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.9e-95 Score=794.96 Aligned_cols=450 Identities=25% Similarity=0.415 Sum_probs=377.1
Q ss_pred CCcccccccccCCcccccccccccceeehhhccCCCCCCCC-CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEE
Q 008405 5 ELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGL-AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQV 83 (567)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~-~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQv 83 (567)
....+-||.+||.+. |...-...+.|+++.. .+ .|++|+|+|||+++|.+| +++|++|||+++. ||+
T Consensus 43 ~~~~~~~g~~~~~~~--~~~~~~~~~~i~~l~~------~~~~g~~V~v~Grv~~~R~~G--k~~Fl~LRd~~~~--iQ~ 110 (550)
T PTZ00401 43 EKYKDVFGAAPMVQS--TTYKSRTFIPVAVLSK------PELVDKTVLIRARVSTTRKKG--KMAFMVLRDGSDS--VQA 110 (550)
T ss_pred chhhccCCccccccc--cccCCCceEEHHHCCc------cccCCCEEEEEEEEEEEecCC--CeEEEEEEeCCcC--EEE
Confidence 345678999999733 3323345688888863 44 799999999999999999 6999999999875 999
Q ss_pred EEeCCc--c----ccccCCCCCcEEEEEeEEeCCCC----CCcceeEEEEeEEEEecCCCCCCCCCCCcC----------
Q 008405 84 IVDKDV--A----DLGQLVPTGTCVYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPIPKTK---------- 143 (567)
Q Consensus 84 v~~~~~--~----~~~~~l~~gs~V~V~G~v~~~~~----~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~---------- 143 (567)
|++.+. . .+...|+.||+|.|+|+|+..+. .+++++||++++|+|+|+|. .++|++...
T Consensus 111 v~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~-~~lP~~~~d~~~~~~~~~~ 189 (550)
T PTZ00401 111 MAAVEGDVPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESL-RTLPFTLEDASRKESDEGA 189 (550)
T ss_pred EEECCCccCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCC-CCCCCCccccccccccccc
Confidence 996432 1 24567999999999999998532 24688999999999999985 467776432
Q ss_pred -CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhc
Q 008405 144 -LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELI 222 (567)
Q Consensus 144 -~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~ 222 (567)
.+.+++.++||||+|++.++++|++||+|+++||+||.++||+||+||+|+++++||+++.|.
T Consensus 190 ~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~---------------- 253 (550)
T PTZ00401 190 KVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFK---------------- 253 (550)
T ss_pred ccChhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCccccccc----------------
Confidence 245677789999999999999999999999999999999999999999999999999888653
Q ss_pred CCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCc
Q 008405 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFAR 302 (567)
Q Consensus 223 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~ 302 (567)
++||++
T Consensus 254 --------------------------------------------------------------------------v~yf~~ 259 (550)
T PTZ00401 254 --------------------------------------------------------------------------LEYFNR 259 (550)
T ss_pred --------------------------------------------------------------------------cccCCC
Confidence 358999
Q ss_pred cceeecchhhhHHHHh-hcCCcEEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHhhhcCc
Q 008405 303 QAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCF 380 (567)
Q Consensus 303 ~~~L~~S~ql~le~~~-~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d~~~lm~~~E~li~~l~~~~~~~~~ 380 (567)
++||+||||||||+++ +|++||||||||||||+++|+||||||||||||++|. +|+++|+++|+||++++..+.+.+
T Consensus 260 ~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~- 338 (550)
T PTZ00401 260 FAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT- 338 (550)
T ss_pred CeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc-
Confidence 9999999999999976 5799999999999999999999999999999999985 799999999999999999887652
Q ss_pred ccchhhhccCCchh----------------------------hhhhhhccCCCcceecHHHHHHHHHHHHHcCccccccc
Q 008405 381 DDMEFMAKNYDKSC----------------------------INRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKV 432 (567)
Q Consensus 381 ~~l~~~~~~~~~~~----------------------------~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~ 432 (567)
.+++.+...++... .+.+. ....||+||+|.||+++|++.. ....
T Consensus 339 ~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-~~~~~~~rl~y~eai~lL~~~~------~~~~ 411 (550)
T PTZ00401 339 KELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVH-NMDSRMLRINYMHCIELLNTVL------EEKM 411 (550)
T ss_pred hhhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHH-hcCCCcccccHHHHHHHHHHhc------ccCC
Confidence 34443322221110 00111 1345799999999999998641 1234
Q ss_pred ccccccchhHHhhhc---cccccCcEEEec-CCCCCcccccc-ccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHH
Q 008405 433 EWGIDLASEHERYLT---EVKFQKPVIVYN-YPKGIKAFYMR-LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSR 507 (567)
Q Consensus 433 ~~g~dl~~~~e~~L~---e~~~~~p~fI~~-yP~~~~pf~~~-~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~ 507 (567)
.++.|++.++|++|+ ++.++.|+||+| ||..++|||++ .+++++++++||||++ |+||+||++|+||+++|.++
T Consensus 412 ~~~~dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~-G~EI~sG~qR~~d~~~l~~r 490 (550)
T PTZ00401 412 APTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIR-GEEISSGAQRIHDPDLLLAR 490 (550)
T ss_pred CcccccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeC-CEEEccchhhcCCHHHHHHH
Confidence 577899999999885 445688999998 99999999965 4556789999999996 68999999999999999999
Q ss_pred HHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 508 IEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 508 ~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
++++|+++..|+|||+|++||+|||||||||||||+|++||++|||+|++|||+|+||.
T Consensus 491 ~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 491 AKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred HHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=3.1e-95 Score=795.59 Aligned_cols=445 Identities=28% Similarity=0.444 Sum_probs=377.2
Q ss_pred CcccccccccCCcccccc-cccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEE
Q 008405 6 LPVDQVATMDLNDDAVQR-HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVI 84 (567)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv 84 (567)
...+-||.+||. ++|+ ..-.+++.|.+|. .++.|++|+|+|||+++|.+| +++|++|||+++. ||+|
T Consensus 47 ~~~~~yg~~~~~--~~~~~~~~~~~~~i~~l~------~~~~g~~V~v~Grv~~~R~~g--k~~Fl~Lrd~~~~--iQ~v 114 (530)
T PLN02850 47 PLASNYGDVPLE--ELQSKVTGREWTDVSDLG------EELAGSEVLIRGRVHTIRGKG--KSAFLVLRQSGFT--VQCV 114 (530)
T ss_pred hhhccCCccccc--ccccccCCceEeEhhhcc------hhhCCCEEEEEEEEEEEccCC--CeEEEEEEeCCcC--EEEE
Confidence 345678999997 3333 2224567777775 478899999999999999999 7999999999864 9999
Q ss_pred EeCCcc-------ccccCCCCCcEEEEEeEEeCCCC---CCcceeEEEEeEEEEecCCCCCCCCCCCcC-----------
Q 008405 85 VDKDVA-------DLGQLVPTGTCVYVEGMLKNPPE---GTKQKIELRVQKVVDVGMVDPAKYPIPKTK----------- 143 (567)
Q Consensus 85 ~~~~~~-------~~~~~l~~gs~V~V~G~v~~~~~---~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~----------- 143 (567)
+.++.. .|...|+.||+|.|+|+|+.++. +.++++||++++|.|+|+|. .++|++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~ 193 (530)
T PLN02850 115 VFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKAL-ATLPFNVEDAARSESEIEKA 193 (530)
T ss_pred EECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCC-CCCCCChhhccccccccccc
Confidence 976531 24567999999999999996432 34578999999999999986 467876432
Q ss_pred ---------CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccc
Q 008405 144 ---------LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 214 (567)
Q Consensus 144 ---------~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~ 214 (567)
.+.+++.++|+||+|++.++++||+||.|++.+|+||.++||+||+||+|++++|||+++.|.+
T Consensus 194 ~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------- 266 (530)
T PLN02850 194 LQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------- 266 (530)
T ss_pred ccccccccccChhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee-------
Confidence 2356677899999999999999999999999999999999999999999999999998876533
Q ss_pred hhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCc
Q 008405 215 DKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKID 294 (567)
Q Consensus 215 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (567)
T Consensus 267 -------------------------------------------------------------------------------- 266 (530)
T PLN02850 267 -------------------------------------------------------------------------------- 266 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHH
Q 008405 295 YTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMC 372 (567)
Q Consensus 295 f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d~~~lm~~~E~li~~l~ 372 (567)
+||++++||++|||||||++ +++++||||||||||||+++|+||+||||||||||+|. +|+++|+++|+||++++
T Consensus 267 ---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~ 343 (530)
T PLN02850 267 ---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIF 343 (530)
T ss_pred ---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 48999999999999999996 46899999999999999999999999999999999997 59999999999999999
Q ss_pred HHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccc---
Q 008405 373 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEV--- 449 (567)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~--- 449 (567)
..+.+.+..++..+...++...++ ...++++++|.||++++.+. +. ...++.|++.++|+.|++.
T Consensus 344 ~~l~~~~~~el~~i~~~~~~~~~~-----~~~~~~rit~~ea~~~L~~~---g~----~~~~~~dl~~~~E~~Lg~~v~~ 411 (530)
T PLN02850 344 DGLNERCKKELEAIREQYPFEPLK-----YLPKTLRLTFAEGIQMLKEA---GV----EVDPLGDLNTESERKLGQLVKE 411 (530)
T ss_pred HHHHhhhhhhHHhhcccCCcchhh-----hcCCcccCCHHHHHHHHHHc---CC----CCCCCCCcchHHHHHHHHHHHH
Confidence 999888777777665544322222 12367899999999999763 21 2234568999999988653
Q ss_pred cccC-cEEEecCCCCCccccccc-cCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhc
Q 008405 450 KFQK-PVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRF 527 (567)
Q Consensus 450 ~~~~-p~fI~~yP~~~~pf~~~~-~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~ 527 (567)
.++. ++||+|||..++|||++. ++|++++++||||++ |+||+||++|+|++++|.++++++|++++.++|||++++|
T Consensus 412 ~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~-G~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~ 490 (530)
T PLN02850 412 KYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIR-GEEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRY 490 (530)
T ss_pred hcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeC-CEEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHc
Confidence 3444 467899999999999654 456789999999995 5899999999999999999999999999999999999999
Q ss_pred CCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 528 GTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 528 G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
|+|||||||||||||+||+||++|||+|++|||+|+||.
T Consensus 491 G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 491 GAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred CCCCCceEEEcHHHHHHHHcCCCchheEeecCCCCCCCC
Confidence 999999999999999999999999999999999999985
No 13
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=8.1e-89 Score=742.15 Aligned_cols=429 Identities=22% Similarity=0.340 Sum_probs=345.6
Q ss_pred cccccccccccceeehhhccC-CCCC---CCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c
Q 008405 18 DDAVQRHQFSDRVLIKSILTR-PDGG---AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D 91 (567)
Q Consensus 18 ~~~~~~~~~~~r~~i~~i~~~-~~~~---~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~ 91 (567)
.+.|++ .|...++++++... ..+. ....|++|+|+|||+++|.+| |++|++|+|++|. ||+|++++.. .
T Consensus 21 ~~~yp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g--k~~F~~l~D~~g~--iQ~~~~~~~~~~~ 95 (496)
T TIGR00499 21 NNPYLN-KFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG--KATFITLQDESGQ--IQLYVNKDDLPED 95 (496)
T ss_pred CCCCCC-CCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC--CeEEEEEEcCCcc--EEEEEECCcCcHH
Confidence 456664 57788999998753 1111 124488999999999999999 7999999999865 9999986531 1
Q ss_pred ---cc-cCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccCc-HHHH
Q 008405 92 ---LG-QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPRT-NTIA 163 (567)
Q Consensus 92 ---~~-~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R~-~~~~ 163 (567)
+. ..|+.||+|.|+|++.+++. |++||++++|++||+|. .|+|.+.++ .|+..++||||+|. +..+
T Consensus 96 ~~~~~~~~l~~gd~V~v~G~~~~t~~---gelel~~~~i~ilsk~~---~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~ 169 (496)
T TIGR00499 96 FYEFDEYLLDLGDIIGVTGYPFKTKT---GELSVHVTELQILTKAL---RPLPDKFHGLTDQETRYRQRYLDLIVNPDSR 169 (496)
T ss_pred HHHHHHhcCCCCCEEEEEEEEEECCC---CcEEEEeeEEEEEecCC---CCCCccccccCChhhhhhhhhhhhhcCHHHH
Confidence 22 34899999999999998874 78999999999999974 566665544 46666799999994 7899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCc-cceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGE-MFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e-~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (567)
++|++||.|+++||+||.++||+||+||+|+++ ++||+. +| .|..
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~-~gga~a~pF--~t~~------------------------------- 215 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVI-PGGANARPF--ITHH------------------------------- 215 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecC-CCCccceeE--Eeec-------------------------------
Confidence 999999999999999999999999999999976 567654 34 2210
Q ss_pred hhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcC
Q 008405 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAV 321 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~ 321 (567)
++|+.++||.+|||||||++ ++|+
T Consensus 216 -------------------------------------------------------~~~~~~~yLriSpELylKrlivgG~ 240 (496)
T TIGR00499 216 -------------------------------------------------------NALDMDLYLRIAPELYLKRLIVGGF 240 (496)
T ss_pred -------------------------------------------------------ccCCCceEEecCHHHHHHHHHhCCC
Confidence 24788999999999999986 6789
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhc
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMV 401 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 401 (567)
+||||||||||||+++ +||||||||||||++|+||+++|+++|+||+.++..+.+.+...+ . .....
T Consensus 241 ~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~-------~-----~~~~~ 307 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITY-------G-----ELEID 307 (496)
T ss_pred CceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceec-------C-----ceecc
Confidence 9999999999999995 699999999999999999999999999999999999987654221 1 01123
Q ss_pred cCCCcceecHHHHHHHHHHHHHcCccc---------------------ccccccccccchhHHhhhccccccCcEEEecC
Q 008405 402 ASTPFERITYTEAVELLEVAVKEGKHF---------------------ENKVEWGIDLASEHERYLTEVKFQKPVIVYNY 460 (567)
Q Consensus 402 ~~~pf~rity~eA~~~l~~~~~~~~~~---------------------~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~y 460 (567)
++.||+|+||.||++++.+.. |.++ .....+|..+...+++++ ++.+.+|+||+||
T Consensus 308 ~~~pf~rit~~eai~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v-e~~l~~P~fv~dy 384 (496)
T TIGR00499 308 FKKPFKRITMVEAIKKYDMET--GIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFL-EHTLIQPTFITHY 384 (496)
T ss_pred CCCCceEEEHHHHHHHHHHhc--CCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHH-HhccCCCEEEECC
Confidence 567999999999999774321 1000 001112222333445554 4556889999999
Q ss_pred CCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH------HcCCCCCCc--HHHHHHhhcCCCCc
Q 008405 461 PKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE------DMGLPLEPY--EWYLDLRRFGTVKH 532 (567)
Q Consensus 461 P~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~------~~g~~~~~~--~~yl~a~~~G~PP~ 532 (567)
|.+++||++..++++.+++|||||++ |.||+||++|++|+.+|.++++ +.|.+++.+ +|||+|++||||||
T Consensus 385 P~~~splak~~~~~p~~~~rFeL~i~-G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~ 463 (496)
T TIGR00499 385 PAEISPLAKRNPSNPEFTDRFELFIA-GKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPT 463 (496)
T ss_pred chhcCcccccCCCCCCeEEEEEEEeC-CeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCC
Confidence 99999997666667789999999995 6799999999999999888864 567776664 89999999999999
Q ss_pred ceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 533 SGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 533 gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
||||||||||+|+|||.+|||||++||+++.
T Consensus 464 gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 464 GGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred ceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 9999999999999999999999999999875
No 14
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-88 Score=741.37 Aligned_cols=428 Identities=19% Similarity=0.284 Sum_probs=347.4
Q ss_pred cccccceeehhhccC-CCCC-C--CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc---ccc---c
Q 008405 24 HQFSDRVLIKSILTR-PDGG-A--GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADL---G 93 (567)
Q Consensus 24 ~~~~~r~~i~~i~~~-~~~~-~--~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~---~~~---~ 93 (567)
+.|..+++++++.+. .++. . ...|++|+|+|||+++|.+| |++|++|+|++|. ||||++++. ..+ .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G--k~~F~~lrD~~g~--iQ~~~~~~~~~~~~~~~~~ 113 (505)
T PRK12445 38 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG--KASFVTLQDVGGR--IQLYVARDSLPEGVYNDQF 113 (505)
T ss_pred CCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC--CcEEEEEEeCCcc--EEEEEECCccchhhHHHHH
Confidence 347788999998753 1111 1 24478899999999999999 7999999999864 999998643 112 2
Q ss_pred cCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHHHHHHHH
Q 008405 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIR 169 (567)
Q Consensus 94 ~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~~i~r~R 169 (567)
..++.||+|.|+|++.+++. |++||.++++++||+|. .|+|.+.++ .+...++|+||+| ++..+++|++|
T Consensus 114 ~~l~~Gd~V~v~G~~~~t~~---gelel~~~~~~llsk~~---~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~R 187 (505)
T PRK12445 114 KKWDLGDIIGARGTLFKTQT---GELSIHCTELRLLTKAL---RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVR 187 (505)
T ss_pred hcCCCCCEEEEEEEEEecCC---CcEEEEEeEEEEEecCC---CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 46899999999999999874 69999999999999974 566665543 4566678999998 58899999999
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhh
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (567)
|+|+++||+||.++||+||+||+|++. ++||++ +++.|.
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~-~gGa~a-~pF~t~--------------------------------------- 226 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVI-PGGASA-RPFITH--------------------------------------- 226 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEec-CCCCcc-cceecc---------------------------------------
Confidence 999999999999999999999999875 778765 233331
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEe
Q 008405 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (567)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~ 328 (567)
.+||+.++||.+|||||||++ ++|++||||||
T Consensus 227 -----------------------------------------------~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg 259 (505)
T PRK12445 227 -----------------------------------------------HNALDLDMYLRIAPELYLKRLVVGGFERVFEIN 259 (505)
T ss_pred -----------------------------------------------cccCCcceeeecCHHHHHHHHHhccCCcEEEEe
Confidence 136888999999999999985 67899999999
Q ss_pred cccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcce
Q 008405 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (567)
Q Consensus 329 ~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~r 408 (567)
||||||++ +.||||||||||||++|+|++++|+++|+||++++..+.+.+.. .+ .... ..++.||+|
T Consensus 260 ~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~--~~-----~~~~-----i~~~~pf~r 326 (505)
T PRK12445 260 RNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKV--TY-----GEHV-----FDFGKPFEK 326 (505)
T ss_pred hhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccce--ec-----Ccee-----ccCCCCceE
Confidence 99999998 79999999999999999999999999999999999988865431 11 1111 135679999
Q ss_pred ecHHHHHHHHHHH-H-Hc------------Ccccccccccccc-cchhHHhhhccccccCcEEEecCCCCCccccccccC
Q 008405 409 ITYTEAVELLEVA-V-KE------------GKHFENKVEWGID-LASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND 473 (567)
Q Consensus 409 ity~eA~~~l~~~-~-~~------------~~~~~~~~~~g~d-l~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~ 473 (567)
+||.||++.+.+. . .. ...+.....|+.+ +..++..+++|+.+.+|+||+|||.+++|||++.++
T Consensus 327 it~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vE~~l~~P~Fv~dyP~~~splak~~~~ 406 (505)
T PRK12445 327 LTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDV 406 (505)
T ss_pred EEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEECCCchhCcccccCCC
Confidence 9999999988541 0 00 0001111223322 444556677777788999999999999999987777
Q ss_pred CcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH------cCCCCCC--cHHHHHHhhcCCCCcceeeecHHHHHHH
Q 008405 474 DLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED------MGLPLEP--YEWYLDLRRFGTVKHSGFGLGFERMILF 545 (567)
Q Consensus 474 d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~------~g~~~~~--~~~yl~a~~~G~PP~gG~GiGiDRLlMl 545 (567)
+++++++||||++ |.||+||++|.+++++|.+++++ .|.++.. ++|||+|++||||||||||||||||+|+
T Consensus 407 ~p~~~~rFeL~i~-G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMl 485 (505)
T PRK12445 407 NPEITDRFEFFIG-GREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIML 485 (505)
T ss_pred CCCceEEEEEEeC-CEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHH
Confidence 7789999999995 68999999999999999999874 3665544 3799999999999999999999999999
Q ss_pred HcCCCCccccccccCCCC
Q 008405 546 ATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 546 l~g~~nIrdvi~FPr~~~ 563 (567)
|||.+|||||++||+++.
T Consensus 486 ltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 486 FTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HcCCCchheEecCCCCCC
Confidence 999999999999999875
No 15
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-90 Score=699.45 Aligned_cols=445 Identities=27% Similarity=0.438 Sum_probs=391.2
Q ss_pred CcccccccccCCcccccccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEE
Q 008405 6 LPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV 85 (567)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~ 85 (567)
-+.+.|+.++|+ ++|+.+-+..+.|+||.+ +..|+.|+|+||||+.|..| |+||+.||++.+ +||+++
T Consensus 49 ~~~~~yg~~~l~--~s~~~~~~~~~~v~dl~~------~~~~~~V~vRgrVhtsr~~G--K~~FlvLRq~~~--tVQ~~~ 116 (533)
T KOG0556|consen 49 YAKERYGDLSLI--QSQSKEGRELTDVSDLDE------SNDGSEVLVRGRVHTSRLKG--KLCFLVLRQQGS--TVQCLV 116 (533)
T ss_pred HHhhhcCccccc--ccccccccceeehhhhhh------hcCCceEEEEEEEeeccccc--eEEEEEEeccCc--eEEEEE
Confidence 356789999999 777887777888998874 66789999999999999999 799999999975 599999
Q ss_pred eCCcc--------ccccCCCCCcEEEEEeEEeCCCCC----CcceeEEEEeEEEEecCCCCCCCCCCCcC----------
Q 008405 86 DKDVA--------DLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKTK---------- 143 (567)
Q Consensus 86 ~~~~~--------~~~~~l~~gs~V~V~G~v~~~~~~----~~~~lEl~~~~i~vls~~~~~~~Pi~~~~---------- 143 (567)
..+.. +|...|+.||+|.|.|+|.+.+.. +++.+||++.+|.++|.+. +.+|++-++
T Consensus 117 ~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~-~~LPl~veDasrse~~eE~ 195 (533)
T KOG0556|consen 117 AVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIAL-PNLPLQVEDASRSEPDEEK 195 (533)
T ss_pred EcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccccceeEEEEEEEEEEeccc-ccCCeeehhhcccccchhh
Confidence 75542 377789999999999999988652 6789999999999999987 568875321
Q ss_pred ----------CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeecccc
Q 008405 144 ----------LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISD 213 (567)
Q Consensus 144 ----------~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~ 213 (567)
.+.++.+++|.||+|+|.+|+|||+.+.|+.++|+||..+||+||+||+|.++.+||+++.|
T Consensus 196 a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF-------- 267 (533)
T KOG0556|consen 196 AAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVF-------- 267 (533)
T ss_pred hcCCccccceecccccccceeeecccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeE--------
Confidence 13456678999999999999999999999999999999999999999999999888876654
Q ss_pred chhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 008405 214 ADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKI 293 (567)
Q Consensus 214 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 293 (567)
T Consensus 268 -------------------------------------------------------------------------------- 267 (533)
T KOG0556|consen 268 -------------------------------------------------------------------------------- 267 (533)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHH
Q 008405 294 DYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFM 371 (567)
Q Consensus 294 ~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d~~~lm~~~E~li~~l 371 (567)
+++||+++|||+||||||+||+ +++|+|||+||||||+|+|+|+||++||+.||+||+|. .|.++|+++.+++.++
T Consensus 268 --~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~I 345 (533)
T KOG0556|consen 268 --RVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFI 345 (533)
T ss_pred --EEEeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999996 56699999999999999999999999999999999997 5999999999999999
Q ss_pred HHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccc
Q 008405 372 CDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKF 451 (567)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~ 451 (567)
+..+.+.|..+|+..+++++.+.+..+ .|--|++|.|++++|++. |. ......||+++.||+|+..+.
T Consensus 346 F~~l~ery~~Eie~Vr~qyp~e~fkf~-----~~~lrl~~~e~v~mLrea---Gv----E~g~~dDlsTe~Ek~LG~lV~ 413 (533)
T KOG0556|consen 346 FKGLRERYAKEIETVRKQYPFEPFKFL-----EPPLRLTFKEGVAMLREA---GV----EMGDEDDLSTESEKKLGQLVR 413 (533)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccccC-----CCceEeehHHHHHHHHHc---Cc----ccCCccccCChhHHHHHHHHH
Confidence 999999999999999998876655432 455799999999999764 31 223335899999999886543
Q ss_pred ----cCcEEEecCCCCCcccccccc-CCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhh
Q 008405 452 ----QKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRR 526 (567)
Q Consensus 452 ----~~p~fI~~yP~~~~pf~~~~~-~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~ 526 (567)
..+++|.+||..++|||.+.+ .|+.++++||+|+ .|.||.+|.||+|+++.|.++++.+|+++.....||++++
T Consensus 414 eky~tdfyildkyP~avRPFYTmpd~~~p~ySnSyD~fm-RGeEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFr 492 (533)
T KOG0556|consen 414 EKYDTDFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFM-RGEEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFR 492 (533)
T ss_pred HHhCCcEEEEccCccccccccccCCCCCCCcccchhhee-chhhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 467888999999999997654 5567899999999 6899999999999999999999999999999999999999
Q ss_pred cCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 527 ~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
||+|||||+|||+||++|++||+.|||-+++|||+|.|+.
T Consensus 493 yG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~ 532 (533)
T KOG0556|consen 493 YGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLT 532 (533)
T ss_pred cCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCccccC
Confidence 9999999999999999999999999999999999999974
No 16
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-88 Score=738.55 Aligned_cols=434 Identities=22% Similarity=0.322 Sum_probs=344.0
Q ss_pred CcccccccccccceeehhhccCCC-CC---CCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--
Q 008405 17 NDDAVQRHQFSDRVLIKSILTRPD-GG---AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-- 90 (567)
Q Consensus 17 ~~~~~~~~~~~~r~~i~~i~~~~~-~~---~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-- 90 (567)
+.|.|+ +.+.+++++.++..... +. ....+++|+|+|||+++|.+| +++|++|||++|. ||||++++..
T Consensus 21 g~~~yp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g--~~~Fi~lrD~~g~--iQ~v~~~~~~~~ 95 (491)
T PRK00484 21 GIDPYP-NKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG--KASFATLQDGSGR--IQLYVSKDDVGE 95 (491)
T ss_pred CCCCCC-CCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC--ceEEEEEEcCCcc--EEEEEECCcCCH
Confidence 445666 45777899999876311 11 112247899999999999999 7999999999874 9999987531
Q ss_pred -c--cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHH
Q 008405 91 -D--LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIA 163 (567)
Q Consensus 91 -~--~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~ 163 (567)
. ....|+.||+|.|+|+|.+++. |++||.++++++||+|. .|+|.+.++ .+...++|+||+| ++..+
T Consensus 96 ~~~~~~~~l~~g~~v~v~G~v~~t~~---ge~el~~~~~~vls~~~---~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~ 169 (491)
T PRK00484 96 EALEAFKKLDLGDIIGVEGTLFKTKT---GELSVKATELTLLTKSL---RPLPDKFHGLTDVETRYRQRYVDLIVNPESR 169 (491)
T ss_pred HHHHHHhcCCCCCEEEEEEEEEEcCC---CcEEEEEeEEEEEeccC---CCCCcccccccchhhhccceeeehhcCHHHH
Confidence 1 2235999999999999999874 69999999999999974 445544433 4555678999997 78999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCc-cceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGE-MFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e-~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (567)
++|++||+|+++||+||.++||+||+||+|+++ ++||++ +|. |.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~-~~Ga~a~pF~--t~-------------------------------- 214 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPI-AGGAAARPFI--TH-------------------------------- 214 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceecc-CCCccceeee--ec--------------------------------
Confidence 999999999999999999999999999999866 677764 452 21
Q ss_pred hhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcC
Q 008405 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAV 321 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~ 321 (567)
.+||+.++||.+|||||||++ ++|+
T Consensus 215 ------------------------------------------------------~~~~~~~~yL~~Spql~lk~l~v~g~ 240 (491)
T PRK00484 215 ------------------------------------------------------HNALDIDLYLRIAPELYLKRLIVGGF 240 (491)
T ss_pred ------------------------------------------------------cccCCCceEeccCHHHHHHHHHhccC
Confidence 147899999999999999996 6789
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhc
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMV 401 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 401 (567)
+||||||||||||+++ .||||||||||||++|.|++++|+++|+||++++..+.+++ .+.+.+.. ..
T Consensus 241 ~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~----------~~ 307 (491)
T PRK00484 241 ERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGTE----------ID 307 (491)
T ss_pred CcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCEe----------ec
Confidence 9999999999999996 69999999999999999999999999999999999988653 33332211 13
Q ss_pred cCCCcceecHHHHHHHHHHHHH----------cCcc--cccccccccc-cchhHHhhhccccccCcEEEecCCCCCcccc
Q 008405 402 ASTPFERITYTEAVELLEVAVK----------EGKH--FENKVEWGID-LASEHERYLTEVKFQKPVIVYNYPKGIKAFY 468 (567)
Q Consensus 402 ~~~pf~rity~eA~~~l~~~~~----------~~~~--~~~~~~~g~d-l~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~ 468 (567)
++.||+||||.||++.+.+... ..++ +.....|+.+ +-.++...++++.+.+|+||+|||..++|||
T Consensus 308 ~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fi~dyP~~~~pf~ 387 (491)
T PRK00484 308 FGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPLA 387 (491)
T ss_pred CCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhhcCCcEEEECCChHHhhhh
Confidence 5679999999999998754210 0000 0111111111 2222222335666789999999999999999
Q ss_pred ccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH------cCCCCC-Cc-HHHHHHhhcCCCCcceeeecHH
Q 008405 469 MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED------MGLPLE-PY-EWYLDLRRFGTVKHSGFGLGFE 540 (567)
Q Consensus 469 ~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~------~g~~~~-~~-~~yl~a~~~G~PP~gG~GiGiD 540 (567)
++.+++++++++||||++ |.||+||++|.+++.+|.+++++ .|.++. .+ +|||+|++||||||||||||||
T Consensus 388 k~~~~~~~~~~rFdL~i~-G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiD 466 (491)
T PRK00484 388 KRHREDPGLTERFELFIG-GREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGID 466 (491)
T ss_pred ccCCCCCCeEEEEEEEEC-CEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHH
Confidence 877778889999999995 66999999999999988888763 344433 23 6999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccCCCCC
Q 008405 541 RMILFATGIDNIRDVIPFPRYPGR 564 (567)
Q Consensus 541 RLlMll~g~~nIrdvi~FPr~~~~ 564 (567)
||+|++||.+|||||++||+++..
T Consensus 467 RLvm~ltg~~~Irdvi~FP~~~~~ 490 (491)
T PRK00484 467 RLVMLLTDSPSIRDVILFPLMRPE 490 (491)
T ss_pred HHHHHHhCCCcHHhcccCCCCCCC
Confidence 999999999999999999998864
No 17
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=2e-87 Score=734.71 Aligned_cols=432 Identities=20% Similarity=0.264 Sum_probs=346.2
Q ss_pred cccccccccccceeehhhccC-C--CCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc----
Q 008405 18 DDAVQRHQFSDRVLIKSILTR-P--DGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---- 90 (567)
Q Consensus 18 ~~~~~~~~~~~r~~i~~i~~~-~--~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~---- 90 (567)
++.|++ .|..+++++++.+. . ..+....|++|+|+|||+++|.+| |++|++|||+++. ||||++++..
T Consensus 77 ~~pyp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G--k~~F~~LrD~~g~--iQv~~~~~~~~~~~ 151 (553)
T PLN02502 77 VEPYPY-KFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG--KLAFYDLRDDGGK--IQLYADKKRLDLDE 151 (553)
T ss_pred CCCCCC-CCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC--CeEEEEEecCCcc--EEEEEECccccchh
Confidence 345554 37788999998764 1 123456789999999999999999 7999999999864 9999986531
Q ss_pred -cc---ccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHH
Q 008405 91 -DL---GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTI 162 (567)
Q Consensus 91 -~~---~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~ 162 (567)
.| ...|+.||+|+|+|++.+++. |++||.+++|++||+|. +|+|.+.++ .+.+.++||||++ ++..
T Consensus 152 ~~~~~~~~~l~~gdiV~V~G~~~~t~~---gelel~~~~i~vLs~~l---~plP~k~~~~~d~e~r~r~RyLdl~~n~~~ 225 (553)
T PLN02502 152 EEFEKLHSLVDRGDIVGVTGTPGKTKK---GELSIFPTSFEVLTKCL---LMLPDKYHGLTDQETRYRQRYLDLIANPEV 225 (553)
T ss_pred HHHHHHHhCCCCCcEEEEEEEEEecCC---CCEEEEEeEEEEEeccC---CCCCcccccccchhhhccchhhhhhcCHHH
Confidence 12 345899999999999999884 69999999999999974 566666544 4556678999995 8889
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 008405 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (567)
Q Consensus 163 ~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (567)
+++|++||.|+++||+||.++||+||+||+|+++ ++||++. ++.|.
T Consensus 226 ~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~-~gGA~a~-pF~t~-------------------------------- 271 (553)
T PLN02502 226 RDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMI-AGGAAAR-PFVTH-------------------------------- 271 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecc-CCCcccc-ceeee--------------------------------
Confidence 9999999999999999999999999999999986 6776653 22221
Q ss_pred hhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcC
Q 008405 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAV 321 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~ 321 (567)
.+||+.++||.+|||||+|++ ++|+
T Consensus 272 ------------------------------------------------------~n~~~~~~yL~~Spel~lK~L~v~g~ 297 (553)
T PLN02502 272 ------------------------------------------------------HNDLNMDLYLRIATELHLKRLVVGGF 297 (553)
T ss_pred ------------------------------------------------------cccCCcceeeecCHHHHHHHHHHhcc
Confidence 137899999999999999985 6889
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhc
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMV 401 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 401 (567)
+||||||||||||+++ .||||||||||||++|.||+++|+++|+||++++..+.+.+. +.+.+. ...
T Consensus 298 ~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~--~~~~~~----------~i~ 364 (553)
T PLN02502 298 ERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYK--IKYHGI----------EID 364 (553)
T ss_pred CCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccc--cccCCc----------ccc
Confidence 9999999999999996 599999999999999999999999999999999999987753 222111 123
Q ss_pred cCCCcceecHHHHHHHHHHHHHc-------------------CcccccccccccccchhHHhhhccccccCcEEEecCCC
Q 008405 402 ASTPFERITYTEAVELLEVAVKE-------------------GKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPK 462 (567)
Q Consensus 402 ~~~pf~rity~eA~~~l~~~~~~-------------------~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~ 462 (567)
+..||+|+||.||++.+.+..-. +.+......||..+...+++++. +.+.+|+||+|||.
T Consensus 365 ~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve-~~l~~PtFV~dyP~ 443 (553)
T PLN02502 365 FTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLE-ETLVQPTFVLDHPV 443 (553)
T ss_pred CCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHH-hhcCCCEEEECCcc
Confidence 56799999999999877432100 00000112233334444555554 45689999999999
Q ss_pred CCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH----cC--CCCC--CcHHHHHHhhcCCCCcce
Q 008405 463 GIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED----MG--LPLE--PYEWYLDLRRFGTVKHSG 534 (567)
Q Consensus 463 ~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~----~g--~~~~--~~~~yl~a~~~G~PP~gG 534 (567)
.++|||+++++++++++|||||+ +|.||+||+++.+|+.+|++++.+ .+ .+.. .+++||+|++||||||||
T Consensus 444 ~~splak~~~~~p~~~erFELfi-~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG 522 (553)
T PLN02502 444 EMSPLAKPHRSKPGLTERFELFI-NGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGG 522 (553)
T ss_pred ccCcccccCCCCCCeEEEEEEEe-CCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCce
Confidence 99999988777889999999999 567999999999999887776643 22 2211 246799999999999999
Q ss_pred eeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 535 FGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 535 ~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
||||||||+|+|||..|||||++||+++.
T Consensus 523 ~GiGiDRLvMlltg~~sIrdVi~FP~~k~ 551 (553)
T PLN02502 523 WGLGIDRLVMLLTDSASIRDVIAFPAMKP 551 (553)
T ss_pred EEehHHHHHHHHcCCcchheeecCCcCCC
Confidence 99999999999999999999999999864
No 18
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-86 Score=701.58 Aligned_cols=410 Identities=26% Similarity=0.441 Sum_probs=331.9
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCC-cc---ccccCCCCCcEEEEEeEEeCCCC
Q 008405 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD-VA---DLGQLVPTGTCVYVEGMLKNPPE 113 (567)
Q Consensus 38 ~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~-~~---~~~~~l~~gs~V~V~G~v~~~~~ 113 (567)
|+.+..+++|++|+++|||+++|++| +++||||||.+|. +|||++++ .. ..+..++.|++|.|+|+|..++.
T Consensus 6 cg~l~~~~vG~~V~L~GWV~r~Rd~G--gliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~e 81 (585)
T COG0173 6 CGELRESHVGQTVTLSGWVHRRRDHG--GLIFIDLRDREGI--VQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARPE 81 (585)
T ss_pred ccccCHHHCCCEEEEEeeeeeccccC--CeEEEEcccCCCe--EEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecCc
Confidence 44555689999999999999999999 8999999999986 99999984 32 13467999999999999999876
Q ss_pred C------CcceeEEEEeEEEEecCCCCCCCCCCCc-CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcE
Q 008405 114 G------TKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 186 (567)
Q Consensus 114 ~------~~~~lEl~~~~i~vls~~~~~~~Pi~~~-~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~ 186 (567)
+ .+|++||++++|+|||.|.+.++++.+. ..+-|..+.+||||+|++.++.++++||+++.++|+||+++||+
T Consensus 82 ~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF~ 161 (585)
T COG0173 82 GTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFL 161 (585)
T ss_pred cccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 3 5799999999999999997666666555 23334444689999999999999999999999999999999999
Q ss_pred EEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHH
Q 008405 187 YIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTEL 266 (567)
Q Consensus 187 EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (567)
|||||+|++|+||||++ |.|+|+.++++| ||||||||
T Consensus 162 EiETPiLtkSTPEGARD-fLVPSRv~~G~F--YALPQSPQ---------------------------------------- 198 (585)
T COG0173 162 EIETPILTKSTPEGARD-FLVPSRVHPGKF--YALPQSPQ---------------------------------------- 198 (585)
T ss_pred EeecCccccCCCccccc-cccccccCCCce--eecCCCHH----------------------------------------
Confidence 99999999999999999 999999988874 66666665
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHH-HhhcCCcEEEEecccccCCCCCCCCcccc
Q 008405 267 TKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEF 345 (567)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~-~~~~~~rVFeI~~~FR~E~~~t~rHlpEF 345 (567)
+|||. |++||+|+|||++|||+|+.+.+|+ |||
T Consensus 199 ---------------------------------------------lfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ-PEF 232 (585)
T COG0173 199 ---------------------------------------------LFKQLLMVAGFDRYYQIARCFRDEDLRADRQ-PEF 232 (585)
T ss_pred ---------------------------------------------HHHHHHHHhcccceeeeeeeecccccccccC-Ccc
Confidence 44554 2445999999999999999999999 999
Q ss_pred ccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHH-----
Q 008405 346 WMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEV----- 420 (567)
Q Consensus 346 tmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~----- 420 (567)
||||+||+|.+-+|+|+++|+|++.+++.+.+. .+..||+||||.||+..|..
T Consensus 233 TQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i----------------------~l~~pFprmtY~eAm~~YGSDKPDl 290 (585)
T COG0173 233 TQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI----------------------ELKTPFPRMTYAEAMRRYGSDKPDL 290 (585)
T ss_pred eeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC----------------------ccCCCcccccHHHHHHHhCCCCCcc
Confidence 999999999999999999999999999987642 24579999999999988821
Q ss_pred -----------HHHcC--ccccc-----------cc-------------------cc---cc--------ccchhHHhhh
Q 008405 421 -----------AVKEG--KHFEN-----------KV-------------------EW---GI--------DLASEHERYL 446 (567)
Q Consensus 421 -----------~~~~~--~~~~~-----------~~-------------------~~---g~--------dl~~~~e~~L 446 (567)
+..+. +.|.. .. .+ |+ .+.+...+++
T Consensus 291 Rf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl 370 (585)
T COG0173 291 RFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFL 370 (585)
T ss_pred cCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchHHHhc
Confidence 00000 00000 00 00 00 0111111111
Q ss_pred c-----------------------------------------------cccccCcEEEecCCCC------------Cccc
Q 008405 447 T-----------------------------------------------EVKFQKPVIVYNYPKG------------IKAF 467 (567)
Q Consensus 447 ~-----------------------------------------------e~~~~~p~fI~~yP~~------------~~pf 467 (567)
. ++-..+++||+|||.. ..||
T Consensus 371 ~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPF 450 (585)
T COG0173 371 SEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPF 450 (585)
T ss_pred CHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCC
Confidence 0 0001378999999973 4699
Q ss_pred cccccCCc-------c--eEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC----CcHHHHHHhhcCCCCcce
Q 008405 468 YMRLNDDL-------K--TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE----PYEWYLDLRRFGTVKHSG 534 (567)
Q Consensus 468 ~~~~~~d~-------~--~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~a~~~G~PP~gG 534 (567)
.|+...+. . .+..|||++ ||.||+|||.|+|+.+.|.+.|+..|++++ .+..+|+|++||.|||||
T Consensus 451 T~P~~~~~~~l~~~p~~~~a~aYDlVl-NG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgG 529 (585)
T COG0173 451 TMPKPEDLELLEADPESVRARAYDLVL-NGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGG 529 (585)
T ss_pred CCCCccchhhhhcCHHHhhhhhccEEe-ccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 88754321 1 245699999 578999999999999999999999999987 578899999999999999
Q ss_pred eeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 535 FGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 535 ~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
+|+|||||+|+|+|..||||||+||+...
T Consensus 530 iA~GlDRlvmll~g~~sIReVIAFPKt~~ 558 (585)
T COG0173 530 IAFGLDRLVMLLTGAESIRDVIAFPKTQQ 558 (585)
T ss_pred eeccHHHHHHHHcCCCchhheeecCCCcc
Confidence 99999999999999999999999999764
No 19
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=3.1e-85 Score=719.53 Aligned_cols=442 Identities=16% Similarity=0.246 Sum_probs=340.9
Q ss_pred CcccccccccccceeehhhccC-CCC--CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc----
Q 008405 17 NDDAVQRHQFSDRVLIKSILTR-PDG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---- 89 (567)
Q Consensus 17 ~~~~~~~~~~~~r~~i~~i~~~-~~~--~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~---- 89 (567)
+.|.|++. |..+++++++.+. .++ +....+..|+|+|||+++|.+|+| ++|++|+|.++ .||||++++.
T Consensus 100 g~~pyp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k-~~F~~L~d~~g--~iQv~~~~~~~~~~ 175 (585)
T PTZ00417 100 GINPYPHK-FERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQK-LRFFDLVGDGA--KIQVLANFAFHDHT 175 (585)
T ss_pred CCCCCCCC-CcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCC-CEEEEEEeCCe--eEEEEEECCccCCC
Confidence 45566654 7788999998763 111 112235679999999999999964 99999999876 4999998652
Q ss_pred -ccc---ccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccC-cHHHHH
Q 008405 90 -ADL---GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPR-TNTIAA 164 (567)
Q Consensus 90 -~~~---~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R-~~~~~~ 164 (567)
..| .+.|+.||+|+|+|++.+++. |++||.+++|++||+|. .++|+.....+.+...++||||+| ++..++
T Consensus 176 ~~~~~~~~~~l~~Gd~V~V~G~~~~t~~---gel~i~~~~i~llsk~l-~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ 251 (585)
T PTZ00417 176 KSNFAECYDKIRRGDIVGIVGFPGKSKK---GELSIFPKETIILSPCL-HMLPMKYGLKDTEIRYRQRYLDLMINESTRS 251 (585)
T ss_pred HHHHHHHHhcCCCCCEEEEEeEEcCCCC---ceEEEEEEEEEEEecCC-CCCCcccCCCCcccccccchhhhhcCHHHHH
Confidence 123 346999999999999988764 69999999999999985 345543212344556678999998 788899
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhh
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGE 244 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (567)
+|++||+|+++||+||.++||+||+||+|+++ +|||++. ++.|..
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~-~GGA~a~-PF~T~~--------------------------------- 296 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLV-AGGANAR-PFITHH--------------------------------- 296 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeecc-CCcccce-eEEecc---------------------------------
Confidence 99999999999999999999999999999997 7788774 333321
Q ss_pred HHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCc
Q 008405 245 AVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSN 323 (567)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~r 323 (567)
++|+.++||.+|||||||++ ++|++|
T Consensus 297 -----------------------------------------------------n~~d~~lYLriSpEL~lKrLlvgG~~r 323 (585)
T PTZ00417 297 -----------------------------------------------------NDLDLDLYLRIATELPLKMLIVGGIDK 323 (585)
T ss_pred -----------------------------------------------------cCCCcceEEeecHHHHHHHHHHhCCCC
Confidence 24677899999999999997 578999
Q ss_pred EEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccC
Q 008405 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403 (567)
Q Consensus 324 VFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 403 (567)
|||||||||||+++ +||||||||||||++|+||+|+|+++|+||+.++..+.+.........+.... .....+.
T Consensus 324 VfeIgp~FRnE~~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~-----~~~i~~~ 397 (585)
T PTZ00417 324 VYEIGKVFRNEGID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKD-----PIEIDFT 397 (585)
T ss_pred EEEEcccccCCCCC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccc-----cccccCC
Confidence 99999999999995 79999999999999999999999999999999999887654211110000000 0012356
Q ss_pred CCcceecHHHHHHHHHHHH-------------------HcCcccccccccccccchhHHhhhccccc-cCcEEEecCCCC
Q 008405 404 TPFERITYTEAVELLEVAV-------------------KEGKHFENKVEWGIDLASEHERYLTEVKF-QKPVIVYNYPKG 463 (567)
Q Consensus 404 ~pf~rity~eA~~~l~~~~-------------------~~~~~~~~~~~~g~dl~~~~e~~L~e~~~-~~p~fI~~yP~~ 463 (567)
.||+|+||.||++.+.+.. ..+.++.....||..+...++.++ |+.+ ++|+||+|||..
T Consensus 398 ~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~v-E~~l~~~PtFI~dyP~~ 476 (585)
T PTZ00417 398 PPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFI-ENKYPNKPFFIIEHPQI 476 (585)
T ss_pred CCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH-HHhhCCCcEEEECCChh
Confidence 7999999999998764311 001111111122323333344444 3334 469999999999
Q ss_pred CccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH------HcCCCCCC---cHHHHHHhhcCCCCcce
Q 008405 464 IKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE------DMGLPLEP---YEWYLDLRRFGTVKHSG 534 (567)
Q Consensus 464 ~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~------~~g~~~~~---~~~yl~a~~~G~PP~gG 534 (567)
++|||+....++++++|||||+ +|.||++|+++.+++.+|+++++ +.| +++. +++||+|++||||||||
T Consensus 477 ~sPLak~~~~dp~v~eRFELfi-~G~EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~AleyGmPPtgG 554 (585)
T PTZ00417 477 MSPLAKYHRSKPGLTERLEMFI-CGKEVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEYGLPPTGG 554 (585)
T ss_pred hCchhhhcCCCCCeEEeEEeEE-CCEEEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHcCCCCCce
Confidence 9999877667788999999999 68899999999999988877543 345 3333 34599999999999999
Q ss_pred eeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 535 FGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 535 ~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
||||||||+|+|||.+|||||++||+++.
T Consensus 555 ~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 555 LGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred EEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 99999999999999999999999999875
No 20
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-84 Score=715.30 Aligned_cols=438 Identities=17% Similarity=0.234 Sum_probs=340.6
Q ss_pred ccccccceeehhhccC-CCC--CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc----c---c
Q 008405 23 RHQFSDRVLIKSILTR-PDG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----D---L 92 (567)
Q Consensus 23 ~~~~~~r~~i~~i~~~-~~~--~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~----~---~ 92 (567)
++.|..+++++++.+. .++ +....++.|+|+|||+++|.+| |++|++|||++|. ||||++++.. . +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G--k~~F~~LrD~~G~--IQvv~~~~~~~~~~~~~~~ 155 (659)
T PTZ00385 80 YSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG--KIIFVTIRSNGNE--LQVVGQVGEHFTREDLKKL 155 (659)
T ss_pred cccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC--CeEEEEEEECCce--EEEEEECCccCCHHHHHHH
Confidence 4568889999998764 221 1122355799999999999999 7999999999875 9999987541 1 2
Q ss_pred ccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCC-C--CcC---CChhhhccccccccC-cHHHHHH
Q 008405 93 GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI-P--KTK---LTLEFLRDRIPFRPR-TNTIAAV 165 (567)
Q Consensus 93 ~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi-~--~~~---~~~e~lr~~~~Lr~R-~~~~~~i 165 (567)
.+.|+.||+|.|+|+|.+++. |++||+++++++||++.....|+ + .++ .+.|++.++||||+| ++..+++
T Consensus 156 ~~~l~~gdiV~V~G~v~~t~~---GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 156 KVSLRVGDIIGADGVPCRMQR---GELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred HhCCCCCCEEEEEEEEEecCC---ceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 346999999999999998873 79999999999999953112221 2 122 356777789999996 6789999
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhH
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEA 245 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (567)
|++||+|+++||+||.++||+||+||+|+++++||++.+|.+.
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~------------------------------------- 275 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTH------------------------------------- 275 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEee-------------------------------------
Confidence 9999999999999999999999999999988766666666321
Q ss_pred HHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcE
Q 008405 246 VAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNV 324 (567)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rV 324 (567)
.++|+.++||.+|||||||++ ++|++||
T Consensus 276 ---------------------------------------------------~n~~~~~~yL~~SPELylKrLivgG~erV 304 (659)
T PTZ00385 276 ---------------------------------------------------HNANAMDLFLRVAPELHLKQCIVGGMERI 304 (659)
T ss_pred ---------------------------------------------------cccCCCCEEecCChHHHHHHHhhcccCCE
Confidence 025788899999999999986 5789999
Q ss_pred EEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccC-CchhhhhhhhccC
Q 008405 325 YTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNY-DKSCINRLRMVAS 403 (567)
Q Consensus 325 FeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~ 403 (567)
||||||||||+++ +||||||||||||++|.|++++|+++|+||+.++..+.+.. .+.+..... +.. .+..+.
T Consensus 305 yeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~--~~~~~~~~~~g~~----~~i~~~ 377 (659)
T PTZ00385 305 YEIGKVFRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTT--VVQIYPENAHGNP----VTVDLG 377 (659)
T ss_pred EEEeceecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCe--eEEeeccccCCCc----ccccCC
Confidence 9999999999995 89999999999999999999999999999999999988743 233220000 000 012356
Q ss_pred CCcceecHHHHHHHHHHHHH-cCccc----------ccccccccccch----------hHHhhhccccccCcEEEecCCC
Q 008405 404 TPFERITYTEAVELLEVAVK-EGKHF----------ENKVEWGIDLAS----------EHERYLTEVKFQKPVIVYNYPK 462 (567)
Q Consensus 404 ~pf~rity~eA~~~l~~~~~-~~~~~----------~~~~~~g~dl~~----------~~e~~L~e~~~~~p~fI~~yP~ 462 (567)
.||+|+||.+++..+.+... .+..+ ....++|+++.. .++.++ +..+.+|+||+|||.
T Consensus 378 ~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~v-e~~l~qPtFI~dyP~ 456 (659)
T PTZ00385 378 KPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFI-TDRVVEPTFVMDHPL 456 (659)
T ss_pred CCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHH-HHhhCCcEEEeCCcc
Confidence 79999997777766543210 00000 011223333222 123333 344589999999999
Q ss_pred CCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH-----HcCCCCCCc---HHHHHHhhcCCCCcce
Q 008405 463 GIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE-----DMGLPLEPY---EWYLDLRRFGTVKHSG 534 (567)
Q Consensus 463 ~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~-----~~g~~~~~~---~~yl~a~~~G~PP~gG 534 (567)
+++||++..++++.+++|||||+ +|.||+||+++.+|+.+|.++++ +.+.+++.+ +|||+|++||||||||
T Consensus 457 e~sPLak~~~~dp~~teRFELfi-~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG 535 (659)
T PTZ00385 457 FMSPLAKEQVSRPGLAERFELFV-NGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAG 535 (659)
T ss_pred ccCcccccCCCCCCeEEEEEEEe-CCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCc
Confidence 99999877777788999999999 57899999999999999999983 344555544 8999999999999999
Q ss_pred eeecHHHHHHHHcCCCCccccccccCCCCC
Q 008405 535 FGLGFERMILFATGIDNIRDVIPFPRYPGR 564 (567)
Q Consensus 535 ~GiGiDRLlMll~g~~nIrdvi~FPr~~~~ 564 (567)
||||||||+|+|||.+|||||++||+++..
T Consensus 536 ~GIGIDRLvMlltg~~sIReVilFP~mr~~ 565 (659)
T PTZ00385 536 WGMGIDRALMLLTNSSNIRDGIIFPLLRQD 565 (659)
T ss_pred eEEcHHHHHHHHcCCcchhheecCcccccc
Confidence 999999999999999999999999998753
No 21
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=1.4e-84 Score=714.03 Aligned_cols=411 Identities=27% Similarity=0.411 Sum_probs=329.0
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc--cccCCCCCcEEEEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVE 105 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~--~~~~l~~gs~V~V~ 105 (567)
+++++.++. ..++|++|+|+|||+++|.+| +++|++|||++|. ||||++++... ..+.|+.||+|.|+
T Consensus 2 rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~G--kl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLR------TEHLGQTVTLAGWVNRRRDLG--GLIFIDLRDRSGI--VQVVCDPDADALKLAKGLRNEDVVQVK 71 (583)
T ss_pred CceeHhhcc------hhhCCCEEEEEEEEEEEEcCC--CcEEEEEEeCCcc--EEEEEeCCHHHHHHHhcCCCCCEEEEE
Confidence 345566654 467899999999999999999 7999999999975 99999876322 24579999999999
Q ss_pred eEEeCCCC------CCcceeEEEEeEEEEecCCCCCCCCCCCc-CCC-hhhhccccccccCcHHHHHHHHHHHHHHHHHH
Q 008405 106 GMLKNPPE------GTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLT-LEFLRDRIPFRPRTNTIAAVARIRNALAYATH 177 (567)
Q Consensus 106 G~v~~~~~------~~~~~lEl~~~~i~vls~~~~~~~Pi~~~-~~~-~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR 177 (567)
|+|.+++. ..+|++||.++++++||+|. .+|++.. ... .+.+.++||||+|++.++++|++||+|++++|
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~--~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR 149 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK--TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVR 149 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHH
Confidence 99997652 14689999999999999985 4566542 223 34444789999999999999999999999999
Q ss_pred HhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchh
Q 008405 178 TFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGRE 257 (567)
Q Consensus 178 ~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
+||.++||+||+||+|++++||||++ |.++++.
T Consensus 150 ~ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~~---------------------------------------------- 182 (583)
T TIGR00459 150 NFLDQQGFLEIETPMLTKSTPEGARD-YLVPSRV---------------------------------------------- 182 (583)
T ss_pred HHHHHCCCEEEECCeeccCCCCCCcc-eeeeeec----------------------------------------------
Confidence 99999999999999999999999998 7664321
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccc-eeecchhhhHHHH-hhcCCcEEEEecccccCC
Q 008405 258 AISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA-FLTVSGQLQVETY-ACAVSNVYTFGPTFRAEH 335 (567)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~-~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~ 335 (567)
++..+ +|.||||+|||++ ++|++||||||||||||+
T Consensus 183 ------------------------------------------~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~ 220 (583)
T TIGR00459 183 ------------------------------------------HKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDED 220 (583)
T ss_pred ------------------------------------------CCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCC
Confidence 12223 4999999999985 678999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHH
Q 008405 336 SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415 (567)
Q Consensus 336 ~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~ 415 (567)
++++|| |||||||||++|.|++++|+++|+||+.++..+.+. .+..||+||||.||+
T Consensus 221 ~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~----------------------~~~~pf~r~ty~ea~ 277 (583)
T TIGR00459 221 LRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGI----------------------DLKKPFPVMTYAEAM 277 (583)
T ss_pred CCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCceEEEHHHHH
Confidence 988877 999999999999999999999999999999987641 135799999999999
Q ss_pred HHHHHH----------------HHcC------------------------ccccc---------ccccccc---------
Q 008405 416 ELLEVA----------------VKEG------------------------KHFEN---------KVEWGID--------- 437 (567)
Q Consensus 416 ~~l~~~----------------~~~~------------------------~~~~~---------~~~~g~d--------- 437 (567)
+.|..- .... ..+.. ....|..
T Consensus 278 ~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 357 (583)
T TIGR00459 278 ERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNE 357 (583)
T ss_pred HHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcC
Confidence 887210 0000 00000 0000000
Q ss_pred --c--------chh-HH----h----------------------------------hhccccccCcEEEecCCCC-----
Q 008405 438 --L--------ASE-HE----R----------------------------------YLTEVKFQKPVIVYNYPKG----- 463 (567)
Q Consensus 438 --l--------~~~-~e----~----------------------------------~L~e~~~~~p~fI~~yP~~----- 463 (567)
. ..+ .+ . -++++...+|+||+|||..
T Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~ 437 (583)
T TIGR00459 358 DGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKE 437 (583)
T ss_pred CcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCccccCC
Confidence 0 000 00 0 0112223589999999996
Q ss_pred ------CccccccccCCcc---------eEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC----CcHHHHHH
Q 008405 464 ------IKAFYMRLNDDLK---------TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE----PYEWYLDL 524 (567)
Q Consensus 464 ------~~pf~~~~~~d~~---------~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~a 524 (567)
++||.++..+|.. .+.+|||++ ||.||+|||.|+|+++.|++.|+..|++++ .+++||+|
T Consensus 438 ~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvl-nG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~A 516 (583)
T TIGR00459 438 GRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVL-NGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEA 516 (583)
T ss_pred CceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEE-eceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8999988665544 678999999 578999999999999999999999998765 47899999
Q ss_pred hhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 525 RRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 525 ~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
++||+|||||+|||||||+|+|||.+||||||+||+..+
T Consensus 517 l~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~ 555 (583)
T TIGR00459 517 FKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTA 555 (583)
T ss_pred HhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCC
Confidence 999999999999999999999999999999999999874
No 22
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-84 Score=654.74 Aligned_cols=444 Identities=29% Similarity=0.518 Sum_probs=389.0
Q ss_pred ccccccccCCcccccccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeC
Q 008405 8 VDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDK 87 (567)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~ 87 (567)
-|+.-+|+++.|- |.|..+.+.|-+.. ++.|++|+|.||||+.|+++ +|+||+||||+|+ ||+|++.
T Consensus 93 le~a~ki~ised~--slp~ak~iki~~s~-------~~r~qrVkv~gWVhrlR~qk--~l~FivLrdg~gf--lqCVl~~ 159 (545)
T KOG0555|consen 93 LEEAKKITISEDK--SLPAAKKIKIYDST-------ENRGQRVKVFGWVHRLRRQK--SLIFIVLRDGTGF--LQCVLSD 159 (545)
T ss_pred HHhhhcccccCCC--CCchhheeeecccc-------cccCceEEeehhhHhhhhcC--ceEEEEEecCCce--EEEEEcc
Confidence 4566788888665 89999888886554 67899999999999999996 7999999999987 9999998
Q ss_pred Cccc-cc-cCCCCCcEEEEEeEEeCCCCC--CcceeEEEEeEEEEecCCCCC--CCCCCCcCCChhhhccccccccCcHH
Q 008405 88 DVAD-LG-QLVPTGTCVYVEGMLKNPPEG--TKQKIELRVQKVVDVGMVDPA--KYPIPKTKLTLEFLRDRIPFRPRTNT 161 (567)
Q Consensus 88 ~~~~-~~-~~l~~gs~V~V~G~v~~~~~~--~~~~lEl~~~~i~vls~~~~~--~~Pi~~~~~~~e~lr~~~~Lr~R~~~ 161 (567)
+... +. -.|..++.|.|.|++++.|.| ..++.||.|+-++|++.+.+. ..|+.. ..+++.++++|||-+|...
T Consensus 160 kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Apag~~~n~lne-~s~~~~~LdnrHl~iRge~ 238 (545)
T KOG0555|consen 160 KLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAPAGGFDNPLNE-ESDVDVLLDNRHLVIRGEN 238 (545)
T ss_pred hhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccCCCcccccccc-cCCcceEeccceeEEechh
Confidence 7642 22 248899999999999999876 568999999999999987533 344433 3456778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHh
Q 008405 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKE 241 (567)
Q Consensus 162 ~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 241 (567)
.+.++++|+.+.+++|+++.+.|++||.+|.|....-|
T Consensus 239 ~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVE------------------------------------------ 276 (545)
T KOG0555|consen 239 ASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVE------------------------------------------ 276 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEec------------------------------------------
Confidence 99999999999999999999999999999999876433
Q ss_pred hhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcC
Q 008405 242 KGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAV 321 (567)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~ 321 (567)
+|+++|++||||.+|||+||+|||||.++.++
T Consensus 277 ------------------------------------------------GGsTLFkldYyGEeAyLTQSSQLYLEtclpAl 308 (545)
T KOG0555|consen 277 ------------------------------------------------GGSTLFKLDYYGEEAYLTQSSQLYLETCLPAL 308 (545)
T ss_pred ------------------------------------------------CcceEEeecccCchhhccchhHHHHHHhhhhc
Confidence 46667888999999999999999999999999
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcc-cchhhhccCCchhhhhhhh
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFD-DMEFMAKNYDKSCINRLRM 400 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~ 400 (567)
++||+|.++||+|.|+|+||++|||++|+|++|.+++++|+.+|+|++..+..++..... .+..++.+| +
T Consensus 309 gdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~ 379 (545)
T KOG0555|consen 309 GDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------K 379 (545)
T ss_pred CceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------C
Confidence 999999999999999999999999999999999999999999999999999999876432 233322222 2
Q ss_pred ccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccc-cCCcceEE
Q 008405 401 VASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRL-NDDLKTVA 479 (567)
Q Consensus 401 ~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~-~~d~~~~~ 479 (567)
.+.+||.||.|.|||+.|+++... ++-....++|.|+....|+++.+.+ +.|+|+++||..+++|||+. .+|+..++
T Consensus 380 ~P~~PFkRm~Y~dAI~wLke~~vk-~edg~~fefGdDI~eAaER~mtdtI-g~PIfLtrFpveiKsFYM~rc~dd~~lTE 457 (545)
T KOG0555|consen 380 APKRPFKRMNYSDAIEWLKEHDVK-KEDGTDFEFGDDIPEAAERKMTDTI-GVPIFLTRFPVEIKSFYMKRCEDDPRLTE 457 (545)
T ss_pred CCCCchhcCCHHHHHHHHHhcCCc-CccCcccccccchhhHHHHhhhhhc-CCceEEeeccccccceeeecccCccccce
Confidence 367899999999999999876321 1222356789999999999998854 78999999999999999974 55677899
Q ss_pred EEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccccc
Q 008405 480 AMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559 (567)
Q Consensus 480 ~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FP 559 (567)
+.|+++||.|||+|||+|+.+.+++.+.+++.|+|+.+|.||++.++||..||||+|||+||++||||+.-+||||.+||
T Consensus 458 SvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyP 537 (545)
T KOG0555|consen 458 SVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYP 537 (545)
T ss_pred eeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 008405 560 RYPGRAD 566 (567)
Q Consensus 560 r~~~~~~ 566 (567)
|..+||+
T Consensus 538 Rfv~RC~ 544 (545)
T KOG0555|consen 538 RFVGRCT 544 (545)
T ss_pred hhhccCC
Confidence 9999996
No 23
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.5e-83 Score=746.13 Aligned_cols=432 Identities=20% Similarity=0.244 Sum_probs=346.1
Q ss_pred cccccccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc------c
Q 008405 18 DDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------D 91 (567)
Q Consensus 18 ~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~------~ 91 (567)
.|.|++ .+..+++++++.+ ...|++|+|+|||+++|.+| |++|++|||++| +||||++++.. .
T Consensus 629 ~~pyp~-~~~~~~~~~~~~~------~~~~~~V~v~Grv~~~R~~G--~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~ 697 (1094)
T PRK02983 629 VDPYPV-GVPPTHTVAEALD------APTGEEVSVSGRVLRIRDYG--GVLFADLRDWSG--ELQVLLDASRLEQGSLAD 697 (1094)
T ss_pred CCCCCC-CCcCccCHHHHHH------hcCCCEEEEEEEEEEEeeCC--CeEEEEEEeCCe--eEEEEEECCccchhhHHH
Confidence 345543 3677888999874 46789999999999999999 799999999986 49999987641 2
Q ss_pred cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHHHHHH
Q 008405 92 LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVAR 167 (567)
Q Consensus 92 ~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~~i~r 167 (567)
+.+.|+.||+|.|+|++.+++. |++||.+++|+++++|. .|+|++.++ .+...++||||+| ++..+++|+
T Consensus 698 ~~~~l~~gd~V~v~G~v~~t~~---ge~ei~~~~i~ll~k~~---~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r 771 (1094)
T PRK02983 698 FRAAVDLGDLVEVTGTMGTSRN---GTLSLLVTSWRLAGKCL---RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLR 771 (1094)
T ss_pred HHhcCCCCCEEEEEEEEEEcCC---CCEEEEEeEEEEEeccC---cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHH
Confidence 4456899999999999999884 69999999999999974 566665543 4555578999996 588999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHH
Q 008405 168 IRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVA 247 (567)
Q Consensus 168 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
+||+|+++||+||.++||+|||||+|+++.+|+++++|. |.
T Consensus 772 ~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~--t~------------------------------------- 812 (1094)
T PRK02983 772 ARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFV--TH------------------------------------- 812 (1094)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeE--ee-------------------------------------
Confidence 999999999999999999999999999875543445563 21
Q ss_pred hhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEE
Q 008405 248 KLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYT 326 (567)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFe 326 (567)
.+||++++||.+|||||||++ ++|++||||
T Consensus 813 -------------------------------------------------~~~~~~~~yLriSPELylKrLivgG~erVFE 843 (1094)
T PRK02983 813 -------------------------------------------------INAYDMDLYLRIAPELYLKRLCVGGVERVFE 843 (1094)
T ss_pred -------------------------------------------------ecCCCccchhhcChHHHHHHHHhcccCceEE
Confidence 247888999999999999985 578999999
Q ss_pred EecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCc
Q 008405 327 FGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPF 406 (567)
Q Consensus 327 I~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf 406 (567)
||||||||+++ .||||||||||+|++|.||+|+|+++|+||+++++.+.+... +.+.+... ......++.||
T Consensus 844 Ig~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~~~-----~~~~i~~~~pf 915 (1094)
T PRK02983 844 LGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDGDG-----VLEPVDISGPW 915 (1094)
T ss_pred EcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCccc-----cccccccCCCc
Confidence 99999999996 699999999999999999999999999999999999876532 11100000 00112367899
Q ss_pred ceecHHHHHHHHHHHH-------------HcCccccccccccc-ccchhHHhhhccccccCcEEEecCCCCCcccccccc
Q 008405 407 ERITYTEAVELLEVAV-------------KEGKHFENKVEWGI-DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN 472 (567)
Q Consensus 407 ~rity~eA~~~l~~~~-------------~~~~~~~~~~~~g~-dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~ 472 (567)
+|+||.||++.+.+.. .....+.....|+. ++..+++..++|+.+.+|+||+|||.+++|||++++
T Consensus 916 ~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fv~dyP~~~spla~~~~ 995 (1094)
T PRK02983 916 PVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLTRPHR 995 (1094)
T ss_pred eEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCCcccccccccCC
Confidence 9999999998654320 00001111122221 244455566677778999999999999999998877
Q ss_pred CCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH-----cCCCCCCc---HHHHHHhhcCCCCcceeeecHHHHHH
Q 008405 473 DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED-----MGLPLEPY---EWYLDLRRFGTVKHSGFGLGFERMIL 544 (567)
Q Consensus 473 ~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~-----~g~~~~~~---~~yl~a~~~G~PP~gG~GiGiDRLlM 544 (567)
+|++.+++||||++ |.||+||+++.+|+.+|.+++++ .+.+++.+ +|||+|++||||||||||||||||+|
T Consensus 996 ~~p~~~erFdL~i~-G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM 1074 (1094)
T PRK02983 996 SDPGLAERWDLVAW-GVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVM 1074 (1094)
T ss_pred CCCCeeEEEEEEEC-CEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHH
Confidence 78889999999995 67999999999999988776653 45566644 69999999999999999999999999
Q ss_pred HHcCCCCccccccccCCCCC
Q 008405 545 FATGIDNIRDVIPFPRYPGR 564 (567)
Q Consensus 545 ll~g~~nIrdvi~FPr~~~~ 564 (567)
+|||. |||||++||+++.+
T Consensus 1075 ~ltg~-sIRdvi~FP~~k~~ 1093 (1094)
T PRK02983 1075 LLTGR-SIRETLPFPLVKPR 1093 (1094)
T ss_pred HHhCC-ChheEecCCcCCCC
Confidence 99996 99999999998753
No 24
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-84 Score=678.12 Aligned_cols=434 Identities=22% Similarity=0.307 Sum_probs=339.9
Q ss_pred CCcccccccccccceeehhhccCCCC--CCC--CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-
Q 008405 16 LNDDAVQRHQFSDRVLIKSILTRPDG--GAG--LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA- 90 (567)
Q Consensus 16 ~~~~~~~~~~~~~r~~i~~i~~~~~~--~~~--~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~- 90 (567)
...|++++. +++++++.++....+. ..+ ....+|+|+|||..+|.+| |++|++|.|.+| +||++++++..
T Consensus 27 ~g~~~yp~~-~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G--K~~F~~i~d~~g--kiQ~yi~k~~~~ 101 (502)
T COG1190 27 QGIDPYPND-FERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG--KASFADLQDGSG--KIQLYVNKDEVG 101 (502)
T ss_pred cCCCCCCCc-CcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC--ceeEEEEecCCc--eEEEEEeccccc
Confidence 344454443 4555688888763111 111 1223499999999999999 699999999986 49999998742
Q ss_pred -----ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCCh---hhhccccccccCc-HH
Q 008405 91 -----DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTL---EFLRDRIPFRPRT-NT 161 (567)
Q Consensus 91 -----~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~---e~lr~~~~Lr~R~-~~ 161 (567)
.+.+.+..||+|+|+|.+.+++. |+++|.|+++++|++| ..|+|++++++ |.....|++|+=. +.
T Consensus 102 ~~~~~~~~~~~dlGDiigv~G~~~~T~~---GelSv~v~~~~lLsKs---L~pLPeK~hgL~D~E~RyR~RylDLi~N~e 175 (502)
T COG1190 102 EEVFEALFKKLDLGDIIGVEGPLFKTKT---GELSVSVEELRLLSKS---LRPLPEKFHGLTDKEIRYRQRYLDLIVNPE 175 (502)
T ss_pred hhhHHHHHhccccCCEEeeeeeeeecCC---CceEEEEEEEeeeccc---CCCCChhhcCCccHHHHHHHHHHHHhcCHH
Confidence 14566889999999999999985 6999999999999997 47899998875 4444567887754 56
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHh
Q 008405 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKE 241 (567)
Q Consensus 162 ~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 241 (567)
.+..|..||+|+++||+||+++||+|||||+|+.. ++||+++ ++.|++|+.
T Consensus 176 ~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i-~GGA~Ar-PF~ThhNal--------------------------- 226 (502)
T COG1190 176 SRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPI-PGGAAAR-PFITHHNAL--------------------------- 226 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEecccccccc-CCCcccc-cceeeeccc---------------------------
Confidence 78899999999999999999999999999999998 7999987 334444322
Q ss_pred hhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhc
Q 008405 242 KGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACA 320 (567)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~ 320 (567)
+++ .||-++|+|||+++ ++|
T Consensus 227 ---------------------------------d~d--------------------------lyLRIApELyLKRliVGG 247 (502)
T COG1190 227 ---------------------------------DMD--------------------------LYLRIAPELYLKRLIVGG 247 (502)
T ss_pred ---------------------------------CCc--------------------------eEEeeccHHHHHHHHhcC
Confidence 233 45666666667764 667
Q ss_pred CCcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhh
Q 008405 321 VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRM 400 (567)
Q Consensus 321 ~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 400 (567)
|+||||||++||||+. +.||||||||||+|+||+||+|+|+++|+|++.+++.+.+.. .+.+-+.. .
T Consensus 248 ~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~--~v~y~~~~----------i 314 (502)
T COG1190 248 FERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTT--KVTYGGQE----------I 314 (502)
T ss_pred chhheeeccccccCCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCe--EEEECCEe----------E
Confidence 9999999999999999 589999999999999999999999999999999999998743 34432221 3
Q ss_pred ccCCCcceecHHHHHHHHHHHH-Hc--------------Cccccccccccc--ccchhHHhhhccccccCcEEEecCCCC
Q 008405 401 VASTPFERITYTEAVELLEVAV-KE--------------GKHFENKVEWGI--DLASEHERYLTEVKFQKPVIVYNYPKG 463 (567)
Q Consensus 401 ~~~~pf~rity~eA~~~l~~~~-~~--------------~~~~~~~~~~g~--dl~~~~e~~L~e~~~~~p~fI~~yP~~ 463 (567)
.+++||+|+++.||+..+.+.. .. +........||. -+...+|.+ +|..+.+|+||+|||.+
T Consensus 315 d~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~-vE~~liqPTFv~d~P~e 393 (502)
T COG1190 315 DFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEEL-VEAKLIQPTFVTDHPVE 393 (502)
T ss_pred ecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHH-hhhhhcCCceeecCccc
Confidence 4789999999999998876531 10 000000011332 123334433 56667899999999999
Q ss_pred CccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH------cCCCCCC--cHHHHHHhhcCCCCccee
Q 008405 464 IKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED------MGLPLEP--YEWYLDLRRFGTVKHSGF 535 (567)
Q Consensus 464 ~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~------~g~~~~~--~~~yl~a~~~G~PP~gG~ 535 (567)
+|||+++++.+++.++|||||+ +|.|+++|+...+|+..|.++|.+ .|.+.+. +++|++|++|||||+||+
T Consensus 394 iSPLak~~~~~p~~teRFElfi-~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~ 472 (502)
T COG1190 394 ISPLAKRHRSNPGLTERFELFI-GGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGL 472 (502)
T ss_pred cCccccCCCCCcchhhhheeee-ccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCc
Confidence 9999888888889999999999 688999999888888777777654 5655443 578999999999999999
Q ss_pred eecHHHHHHHHcCCCCccccccccCCCC
Q 008405 536 GLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 536 GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
|||||||+|+|||..|||||++||.++.
T Consensus 473 GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 473 GIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred cccHHHHHHHHcCCCchhheecccccCC
Confidence 9999999999999999999999998764
No 25
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.1e-81 Score=688.83 Aligned_cols=409 Identities=25% Similarity=0.391 Sum_probs=323.5
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc-cc---cccCCCCCcEEEEEeEEeCCCC
Q 008405 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-AD---LGQLVPTGTCVYVEGMLKNPPE 113 (567)
Q Consensus 38 ~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~---~~~~l~~gs~V~V~G~v~~~~~ 113 (567)
|++++.+++|++|+|+|||+++|++| +++|++|||++|. +|||++++. .. ....|+.||+|.|+|+|..++.
T Consensus 63 cg~l~~~~~gk~V~l~GWV~~~R~~G--~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r~~ 138 (652)
T PLN02903 63 CGALSVNDVGSRVTLCGWVDLHRDMG--GLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSRPQ 138 (652)
T ss_pred hhhcchhhCCCEEEEEEEEEEEecCC--CcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 45666789999999999999999999 7999999999976 999998653 11 2457999999999999997642
Q ss_pred ------CCcceeEEEEeEEEEecCCC-CCCCCCCCc-----CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhh
Q 008405 114 ------GTKQKIELRVQKVVDVGMVD-PAKYPIPKT-----KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQ 181 (567)
Q Consensus 114 ------~~~~~lEl~~~~i~vls~~~-~~~~Pi~~~-----~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~ 181 (567)
..+|++||.+++|+|||+|. +.++++... ..+.++++++||||+|++.++++|++||+|++++|+||.
T Consensus 139 ~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl~ 218 (652)
T PLN02903 139 ESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLE 218 (652)
T ss_pred cCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 13588999999999999984 233444321 245677778999999999999999999999999999999
Q ss_pred c-CCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhh
Q 008405 182 K-QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAIS 260 (567)
Q Consensus 182 ~-~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
+ +||+||+||+|++++||||++ |.+.++..
T Consensus 219 ~~~gFiEVeTPiL~~st~eGard-f~v~~~~~------------------------------------------------ 249 (652)
T PLN02903 219 DVHGFVEIETPILSRSTPEGARD-YLVPSRVQ------------------------------------------------ 249 (652)
T ss_pred hcCCeEEEECCeeccCCCCCCcc-cEEeeecC------------------------------------------------
Confidence 7 999999999999999999998 54443210
Q ss_pred hhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCCCC
Q 008405 261 ASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTS 339 (567)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~t~ 339 (567)
.+..++|.||||+|||++ ++|++||||||||||||+++++
T Consensus 250 ---------------------------------------~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~ 290 (652)
T PLN02903 250 ---------------------------------------PGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRAD 290 (652)
T ss_pred ---------------------------------------CCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCC
Confidence 122346999999999985 6889999999999999999888
Q ss_pred CCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHH
Q 008405 340 RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLE 419 (567)
Q Consensus 340 rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~ 419 (567)
|| |||||||||++|.|++++|+++|+||+.++..+.+. .+..||+||||.||++.|.
T Consensus 291 Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~----------------------~~~~PF~rity~eA~~~yg 347 (652)
T PLN02903 291 RQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGV----------------------QLPNPFPRLTYAEAMSKYG 347 (652)
T ss_pred cc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCceEEEHHHHHHHHc
Confidence 77 999999999999999999999999999999876531 1346999999999998872
Q ss_pred H----------------HHH------------cC-----------cccc------------------------ccc-ccc
Q 008405 420 V----------------AVK------------EG-----------KHFE------------------------NKV-EWG 435 (567)
Q Consensus 420 ~----------------~~~------------~~-----------~~~~------------------------~~~-~~g 435 (567)
. +.. .+ ..+. ... +.|
T Consensus 348 sDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~ 427 (652)
T PLN02903 348 SDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDG 427 (652)
T ss_pred CCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCC
Confidence 1 000 00 0000 000 000
Q ss_pred cccch--hH---------Hh--------------------------------hhcc------ccccCcEEEecCCCC---
Q 008405 436 IDLAS--EH---------ER--------------------------------YLTE------VKFQKPVIVYNYPKG--- 463 (567)
Q Consensus 436 ~dl~~--~~---------e~--------------------------------~L~e------~~~~~p~fI~~yP~~--- 463 (567)
.+.+ .. +. .|.+ +-..+++||+|||..
T Consensus 428 -~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ 506 (652)
T PLN02903 428 -ELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWN 506 (652)
T ss_pred -CccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCcc
Confidence 0111 00 00 0000 001268999999983
Q ss_pred ---------CccccccccCCc-----ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC----CcHHHHHHh
Q 008405 464 ---------IKAFYMRLNDDL-----KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE----PYEWYLDLR 525 (567)
Q Consensus 464 ---------~~pf~~~~~~d~-----~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~a~ 525 (567)
..||.++...|- -.+..|||++ ||.||+|||+|+|+++.|++.++..|++++ .|.|||+|+
T Consensus 507 ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVl-NG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~ 585 (652)
T PLN02903 507 EDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVY-NGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEAL 585 (652)
T ss_pred CCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEe-cceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 359988754431 1345799999 577999999999999999999999999875 588999999
Q ss_pred hcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 526 RFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 526 ~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
+||+|||||+|+|+|||+|+|+|.+||||||+||+...
T Consensus 586 ~yG~PphgG~alGldRlvmll~~~~~IrdviaFPKt~~ 623 (652)
T PLN02903 586 DMGAPPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTT 623 (652)
T ss_pred hcCCCCCCceeecHHHHHHHHcCCCchHheEecCCCCC
Confidence 99999999999999999999999999999999999764
No 26
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.8e-80 Score=683.18 Aligned_cols=414 Identities=26% Similarity=0.407 Sum_probs=326.1
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc--cccCCCCCcEEEEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVE 105 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~--~~~~l~~gs~V~V~ 105 (567)
+++++.++. ..+.|++|+|+|||+++|.+| +++|++|||++|. ||+|+++.... ..+.|+.||+|.|+
T Consensus 4 r~~~~~~l~------~~~~g~~V~l~GwV~~~R~~g--~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~l~~es~V~V~ 73 (588)
T PRK00476 4 RTHYCGELR------ESHVGQTVTLCGWVHRRRDHG--GLIFIDLRDREGI--VQVVFDPDAEAFEVAESLRSEYVIQVT 73 (588)
T ss_pred cceeHHHhh------HHhCCCEEEEEEEEEEEEeCC--CeEEEEEEeCCce--EEEEEeCCHHHHHHHhCCCCCCEEEEE
Confidence 466677765 367899999999999999999 7999999999975 99999863211 34579999999999
Q ss_pred eEEeCCCCC------CcceeEEEEeEEEEecCCCCCCCCCCCcC-CChhhhccccccccCcHHHHHHHHHHHHHHHHHHH
Q 008405 106 GMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTK-LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHT 178 (567)
Q Consensus 106 G~v~~~~~~------~~~~lEl~~~~i~vls~~~~~~~Pi~~~~-~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~ 178 (567)
|+|.+++.+ .+|++||.+++++++|+|.+.++++.+.. .+.+.+.++||||+|++.++++|++||+|++++|+
T Consensus 74 G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ 153 (588)
T PRK00476 74 GTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRN 153 (588)
T ss_pred EEEEecCCcccCccCCCCcEEEEEeEEEEEecCCCCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHH
Confidence 999987632 36889999999999999863334333322 34444557899999999999999999999999999
Q ss_pred hhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhh
Q 008405 179 FLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREA 258 (567)
Q Consensus 179 fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
||.++||+||+||+|++++||||++ |.++++.
T Consensus 154 ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~~----------------------------------------------- 185 (588)
T PRK00476 154 FLDDNGFLEIETPILTKSTPEGARD-YLVPSRV----------------------------------------------- 185 (588)
T ss_pred HHHHCCCEEEECCeeecCCCCCCcc-ceecccc-----------------------------------------------
Confidence 9999999999999999999999998 7765321
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCC
Q 008405 259 ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSH 337 (567)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~ 337 (567)
|++..++|+||||+|||++ ++|++||||||||||||+++
T Consensus 186 ----------------------------------------~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~ 225 (588)
T PRK00476 186 ----------------------------------------HPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLR 225 (588)
T ss_pred ----------------------------------------cCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCC
Confidence 1233346999999999985 67899999999999999999
Q ss_pred CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHH
Q 008405 338 TSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417 (567)
Q Consensus 338 t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~ 417 (567)
++||+ ||||||||++|.|++++|+++|+||+.++..+.+. .+..||+|+||.||++.
T Consensus 226 ~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~----------------------~~~~pf~r~ty~ea~~~ 282 (588)
T PRK00476 226 ADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGV----------------------DLPTPFPRMTYAEAMRR 282 (588)
T ss_pred CCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCc----------------------cCCCCceEEEHHHHHHH
Confidence 88886 99999999999999999999999999999877542 13468999999999987
Q ss_pred HHH----------------HHH------------cC-----------cccc-c---------ccccc----------c-c
Q 008405 418 LEV----------------AVK------------EG-----------KHFE-N---------KVEWG----------I-D 437 (567)
Q Consensus 418 l~~----------------~~~------------~~-----------~~~~-~---------~~~~g----------~-d 437 (567)
|.. ... .+ .... . ...+| . .
T Consensus 283 yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~ 362 (588)
T PRK00476 283 YGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDG 362 (588)
T ss_pred HCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCC
Confidence 620 000 00 0000 0 00000 0 0
Q ss_pred c--------chh-HHh-------------------------hh-------cc------ccccCcEEEecCCCC-------
Q 008405 438 L--------ASE-HER-------------------------YL-------TE------VKFQKPVIVYNYPKG------- 463 (567)
Q Consensus 438 l--------~~~-~e~-------------------------~L-------~e------~~~~~p~fI~~yP~~------- 463 (567)
+ +.+ .++ .| .+ ..-.+++||+|||..
T Consensus 363 l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~ 442 (588)
T PRK00476 363 LKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEG 442 (588)
T ss_pred CcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCC
Confidence 1 000 000 00 00 001368999999973
Q ss_pred -----CccccccccCC--------c--ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC----CcHHHHHH
Q 008405 464 -----IKAFYMRLNDD--------L--KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE----PYEWYLDL 524 (567)
Q Consensus 464 -----~~pf~~~~~~d--------~--~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~a 524 (567)
..||.++...| + -.+.+|||++ +|.||+|||+|+|+++.|++.|+..|++++ .|+|||+|
T Consensus 443 ~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~-ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a 521 (588)
T PRK00476 443 RWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVL-NGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDA 521 (588)
T ss_pred eeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEE-eeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35998875432 2 1357899999 577999999999999999999999999876 68899999
Q ss_pred hhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 525 RRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 525 ~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
++||+|||||||+|+|||+|+|+|.+||||||+||++..
T Consensus 522 ~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~~ 560 (588)
T PRK00476 522 LKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQS 560 (588)
T ss_pred HhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCCC
Confidence 999999999999999999999999999999999999864
No 27
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=6.4e-80 Score=685.45 Aligned_cols=408 Identities=23% Similarity=0.372 Sum_probs=320.6
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc--c---ccccCCCCCcEEEEEeEEeCCC
Q 008405 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--A---DLGQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 38 ~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~--~---~~~~~l~~gs~V~V~G~v~~~~ 112 (567)
|++++.++.|++|+|+|||+++|++| +++|++|||++|. ||||++++. . .....|+.||+|.|+|+|.+++
T Consensus 9 cg~l~~~~~g~~V~l~GWV~~~R~~G--~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~ 84 (706)
T PRK12820 9 CGHLSLDDTGREVCLAGWVDAFRDHG--ELLFIHLRDRNGF--IQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRL 84 (706)
T ss_pred cccCChhhCCCEEEEEEEEEEEEcCC--CcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccC
Confidence 56666789999999999999999999 7999999999975 999998653 1 1245799999999999999864
Q ss_pred CC------CcceeEEEEeEEEEecCCCCCCCCCCCcC------------CChhhhccccccccCcHHHHHHHHHHHHHHH
Q 008405 113 EG------TKQKIELRVQKVVDVGMVDPAKYPIPKTK------------LTLEFLRDRIPFRPRTNTIAAVARIRNALAY 174 (567)
Q Consensus 113 ~~------~~~~lEl~~~~i~vls~~~~~~~Pi~~~~------------~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~ 174 (567)
.+ .+|++||.+++++||++|.+.++|+.++. .+.+.+.++||||+|++.++++|++||+|++
T Consensus 85 ~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~ 164 (706)
T PRK12820 85 EETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIK 164 (706)
T ss_pred ccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHH
Confidence 32 34889999999999999864556655542 2334444799999999999999999999999
Q ss_pred HHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhcccc
Q 008405 175 ATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKA 254 (567)
Q Consensus 175 ~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (567)
+||+||.++||+||+||+|++++||||++ |.+++.
T Consensus 165 ~iR~fl~~~gFiEVeTPiL~~s~~eGAr~-~~~p~~-------------------------------------------- 199 (706)
T PRK12820 165 CARDFLDSRGFLEIETPILTKSTPEGARD-YLVPSR-------------------------------------------- 199 (706)
T ss_pred HHHHHHHHCCCEEEeCCccccCCCCCCcc-eEEeee--------------------------------------------
Confidence 99999999999999999999999999998 544421
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccc-eeecchhhhHHHH-hhcCCcEEEEecccc
Q 008405 255 GREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA-FLTVSGQLQVETY-ACAVSNVYTFGPTFR 332 (567)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~-~L~~S~ql~le~~-~~~~~rVFeI~~~FR 332 (567)
++..++ +|+||||+|||++ ++|++||||||||||
T Consensus 200 --------------------------------------------~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR 235 (706)
T PRK12820 200 --------------------------------------------IHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFR 235 (706)
T ss_pred --------------------------------------------cCCCcceecCCCHHHHHHHHHhccCCcEEEEechhc
Confidence 122223 4999999999995 688999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHH
Q 008405 333 AEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412 (567)
Q Consensus 333 ~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~ 412 (567)
||+++++|| |||||||||++|.|++++|+++|+||++++. +.+ ..+..||+||||.
T Consensus 236 ~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~----------------------~~~~~pf~r~ty~ 291 (706)
T PRK12820 236 DEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IGG----------------------IALPRPFPRMPYA 291 (706)
T ss_pred CCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hcC----------------------cCCCCCceEEEHH
Confidence 999987776 9999999999999999999999999999885 111 0135799999999
Q ss_pred HHHHHHHH----------------HH--------H----cC-----------c-cccc----c-c------ccc------
Q 008405 413 EAVELLEV----------------AV--------K----EG-----------K-HFEN----K-V------EWG------ 435 (567)
Q Consensus 413 eA~~~l~~----------------~~--------~----~~-----------~-~~~~----~-~------~~g------ 435 (567)
||++.|.. .. . .+ . .+.. . . ..|
T Consensus 292 eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~ 371 (706)
T PRK12820 292 EAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTW 371 (706)
T ss_pred HHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEE
Confidence 99988721 00 0 00 0 0000 0 0 000
Q ss_pred -------c------ccchhH-Hh--------------------------hhcc-------------ccccCcEEEecCCC
Q 008405 436 -------I------DLASEH-ER--------------------------YLTE-------------VKFQKPVIVYNYPK 462 (567)
Q Consensus 436 -------~------dl~~~~-e~--------------------------~L~e-------------~~~~~p~fI~~yP~ 462 (567)
. .++.+. .. .|+. .-...++||+|||.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPl 451 (706)
T PRK12820 372 MRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPL 451 (706)
T ss_pred EEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCc
Confidence 0 011100 00 0100 00126799999998
Q ss_pred C-----------CccccccccCC--------cc--eEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC----C
Q 008405 463 G-----------IKAFYMRLNDD--------LK--TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE----P 517 (567)
Q Consensus 463 ~-----------~~pf~~~~~~d--------~~--~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~----~ 517 (567)
. ..||.++..+| +. .+..|||++ +|.||+|||+|+|+++.|++.|+..|++++ .
T Consensus 452 fe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~-nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~ 530 (706)
T PRK12820 452 FEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVV-NGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDK 530 (706)
T ss_pred ccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEe-cceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 46998874432 11 246799999 578999999999999999999999999875 4
Q ss_pred cHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 518 YEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 518 ~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
+.+||+|++||+|||||+|+|+|||+|+|+|.+||||||+||++..
T Consensus 531 Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~ 576 (706)
T PRK12820 531 FGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRS 576 (706)
T ss_pred HHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCC
Confidence 7799999999999999999999999999999999999999999764
No 28
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-81 Score=640.93 Aligned_cols=435 Identities=19% Similarity=0.292 Sum_probs=333.3
Q ss_pred cccccceeehhhccC---CCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc----ccc---c
Q 008405 24 HQFSDRVLIKSILTR---PDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV----ADL---G 93 (567)
Q Consensus 24 ~~~~~r~~i~~i~~~---~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~----~~~---~ 93 (567)
+.|-..++|.++.++ ...+....+..|+|+|||+++|.+|+| |+|+||++++. +||||++.+. .+| .
T Consensus 78 hkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsK-L~Fydl~~~g~--klQvm~~~~~~~~~~~F~~~~ 154 (560)
T KOG1885|consen 78 HKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSK-LVFYDLHGDGV--KLQVMANAKKITSEEDFEQLH 154 (560)
T ss_pred chhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCc-eEEEEEecCCe--EEEEEEehhhcCCHHHHHHHH
Confidence 457778899887764 233455567789999999999999995 99999998853 6999998654 123 4
Q ss_pred cCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHHHHHHHH
Q 008405 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIR 169 (567)
Q Consensus 94 ~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~~i~r~R 169 (567)
+.|++||+|+|.|.+.++.. |+++|.+.++.+||+|. +|+|..+.+ .|+.-.+|++|+- ++..+..|++|
T Consensus 155 ~~lkrGDiig~~G~pgrt~~---gELSi~~~~~~lLspcL---h~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~R 228 (560)
T KOG1885|consen 155 KFLKRGDIIGVSGYPGRTKS---GELSIIPNEIILLSPCL---HMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIR 228 (560)
T ss_pred hhhhccCEEeeecCCCcCCC---ceEEEeecchheecchh---ccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 56999999999999999985 69999999999999984 677766654 3444457888875 35678899999
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhh
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (567)
++|+..||+||+++||+|||||+|... +|||.++..| |+.|.
T Consensus 229 akII~~iRkfld~rgFlEVETPmmn~i-aGGA~AkPFI-T~hnd------------------------------------ 270 (560)
T KOG1885|consen 229 AKIISYIRKFLDSRGFLEVETPMMNMI-AGGATAKPFI-THHND------------------------------------ 270 (560)
T ss_pred HHHHHHHHHHhhhcCceEecchhhccc-cCccccCcee-ecccc------------------------------------
Confidence 999999999999999999999999987 7999887334 33221
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEe
Q 008405 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (567)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~ 328 (567)
.+++|+||||||| |++++ ++|++||||||
T Consensus 271 ------------------------ldm~LylRiAPEL--------------------------~lK~LvVGGldrVYEIG 300 (560)
T KOG1885|consen 271 ------------------------LDMDLYLRIAPEL--------------------------YLKMLVVGGLDRVYEIG 300 (560)
T ss_pred ------------------------cCcceeeeechHH--------------------------HHHHHHhccHHHHHHHH
Confidence 1344555555554 45553 56699999999
Q ss_pred cccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcce
Q 008405 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (567)
Q Consensus 329 ~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~r 408 (567)
+.||||++ +.+||||||.||+|+||+||+|+|+++|+|++.++..+.+++ .+.+..... ....++..+++||+|
T Consensus 301 r~FRNEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~--~i~y~p~~~---~~~~~eldf~~pfrr 374 (560)
T KOG1885|consen 301 RQFRNEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSY--KITYHPNGP---EEPELELDFTRPFRR 374 (560)
T ss_pred HHhhhcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCce--eEeecCCCC---CCCceeeeccCCeee
Confidence 99999999 489999999999999999999999999999999999999875 355433211 111345678999999
Q ss_pred ecHHHHHHHHHHHH-HcCcccc----------cccccccccc------hhHHhhh---ccccccCcEEEecCCCCCcccc
Q 008405 409 ITYTEAVELLEVAV-KEGKHFE----------NKVEWGIDLA------SEHERYL---TEVKFQKPVIVYNYPKGIKAFY 468 (567)
Q Consensus 409 ity~eA~~~l~~~~-~~~~~~~----------~~~~~g~dl~------~~~e~~L---~e~~~~~p~fI~~yP~~~~pf~ 468 (567)
|++-+.++.-.++. ..+..+. .....+.+++ ..+++.. .|+.+.+|+||.|+|..+||++
T Consensus 375 i~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~~hP~imSPLA 454 (560)
T KOG1885|consen 375 IEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFIIDHPQIMSPLA 454 (560)
T ss_pred eeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEcCCchhcCccc
Confidence 99999887653321 0000010 0011111111 1122222 2455779999999999999998
Q ss_pred ccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH------HcCCCCC--CcHHHHHHhhcCCCCcceeeecHH
Q 008405 469 MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE------DMGLPLE--PYEWYLDLRRFGTVKHSGFGLGFE 540 (567)
Q Consensus 469 ~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~------~~g~~~~--~~~~yl~a~~~G~PP~gG~GiGiD 540 (567)
+.+..+.+.++|||||+ ++.|||+.+...+++-.|.++|. ..|.|.. .++.|+.|++|||||+||||||||
T Consensus 455 K~hrs~~glteRFElFi-~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGID 533 (560)
T KOG1885|consen 455 KYHRSKAGLTERFELFI-AGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGID 533 (560)
T ss_pred cccccccchhhHHHHhh-hhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchh
Confidence 87777788999999999 67788888876666665555554 4565533 368999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccCCC
Q 008405 541 RMILFATGIDNIRDVIPFPRYP 562 (567)
Q Consensus 541 RLlMll~g~~nIrdvi~FPr~~ 562 (567)
||+|+||+..|||||++||-+.
T Consensus 534 RL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 534 RLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred hhhhhhcCCcchhheeeccccC
Confidence 9999999999999999999865
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.5e-77 Score=622.56 Aligned_cols=319 Identities=45% Similarity=0.809 Sum_probs=283.4
Q ss_pred CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcC
Q 008405 144 LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIK 223 (567)
Q Consensus 144 ~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~ 223 (567)
+++++++++||||+|++..++++++||.|++.+|+||.++||+||+||+|+.+++||+++.|.
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~----------------- 64 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFK----------------- 64 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccc-----------------
Confidence 457889999999999999999999999999999999999999999999999999998877652
Q ss_pred CCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCcc
Q 008405 224 NPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQ 303 (567)
Q Consensus 224 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~ 303 (567)
.+||+++
T Consensus 65 -------------------------------------------------------------------------~~~~~~~ 71 (322)
T cd00776 65 -------------------------------------------------------------------------VSYFGKP 71 (322)
T ss_pred -------------------------------------------------------------------------cccCCCc
Confidence 3589999
Q ss_pred ceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHhhhcCccc
Q 008405 304 AFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDD 382 (567)
Q Consensus 304 ~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d~~~lm~~~E~li~~l~~~~~~~~~~~ 382 (567)
+||++|||+|||+++++++||||||||||||++++.||||||||||||++|. |++++|+++|+||++++..+.+.+..+
T Consensus 72 ~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~ 151 (322)
T cd00776 72 AYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKE 151 (322)
T ss_pred ceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999877799999999999999998899999999999999999 999999999999999999999887766
Q ss_pred chhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCC
Q 008405 383 MEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPK 462 (567)
Q Consensus 383 l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~ 462 (567)
+..++ ..+ .....+..||+||||.||++++.+.. .. ....||.+++.++|++|++.+..+|+||+|||.
T Consensus 152 ~~~~~-~~~-----~~~~~~~~~~~rit~~eA~~~l~~~~---~~--~~~~~~~~l~~~~e~~l~~~~~~~p~fi~~~P~ 220 (322)
T cd00776 152 LELVN-QLN-----RELLKPLEPFPRITYDEAIELLREKG---VE--EEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPK 220 (322)
T ss_pred Hhhhh-ccC-----cccccCCCCceEEEHHHHHHHHHHcC---CC--CCCCccchhcHHHHHHHHHHhCCCcEEEECCcc
Confidence 55421 011 11123468999999999999987642 10 135688899999999998754489999999999
Q ss_pred CCccccccccC-CcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHH
Q 008405 463 GIKAFYMRLND-DLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFER 541 (567)
Q Consensus 463 ~~~pf~~~~~~-d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDR 541 (567)
+++|||++.++ +++++++||||+||++||+||++|++|+++|.+++++.|+++.+|+|||+|++||+||||||||||||
T Consensus 221 ~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidR 300 (322)
T cd00776 221 EIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLER 300 (322)
T ss_pred ccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHH
Confidence 99999987654 45789999999976699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCccccccccCCCC
Q 008405 542 MILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 542 LlMll~g~~nIrdvi~FPr~~~ 563 (567)
|+|+++|.+|||||++|||+++
T Consensus 301 L~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 301 LVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999985
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=1.1e-76 Score=620.18 Aligned_cols=322 Identities=30% Similarity=0.505 Sum_probs=281.4
Q ss_pred ChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCC
Q 008405 145 TLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKN 224 (567)
Q Consensus 145 ~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~ 224 (567)
+.++..++|++++|++..+++|++||+|++++|+||.++||+||+||+|++++++|+..- +
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g----~--------------- 69 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLG----S--------------- 69 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcc----c---------------
Confidence 456677899999999999999999999999999999999999999999999988875431 0
Q ss_pred CCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccc
Q 008405 225 PPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA 304 (567)
Q Consensus 225 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~ 304 (567)
..+...|..+|||+++
T Consensus 70 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 85 (335)
T PRK06462 70 ----------------------------------------------------------------DLPVKQISIDFYGVEY 85 (335)
T ss_pred ----------------------------------------------------------------cCCccccccccCCCce
Confidence 0122345667999999
Q ss_pred eeecchhhhHHHHhhcCCcEEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCccc
Q 008405 305 FLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHT--SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDD 382 (567)
Q Consensus 305 ~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t--~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~ 382 (567)
||++|||+|||++++|++||||||||||||++++ +||||||||||||++|.|++++|+++|+||++++..+.+++..+
T Consensus 86 yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 86 YLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred eeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999976 69999999999999999999999999999999999999888766
Q ss_pred chhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCC
Q 008405 383 MEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPK 462 (567)
Q Consensus 383 l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~ 462 (567)
+..++... ..++.||+||||.||++++... +. ....+.++..++|++|.+. +++|+||+|||.
T Consensus 166 i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~---~~----~~~~~~~l~~~~E~~l~~~-~~~p~fi~~yP~ 228 (335)
T PRK06462 166 LEFFGRDL---------PHLKRPFKRITHKEAVEILNEE---GC----RGIDLEELGSEGEKSLSEH-FEEPFWIIDIPK 228 (335)
T ss_pred HHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhc---CC----CcchHHHHhHHHHHHHHHH-hCCCEEEECCCh
Confidence 66554321 1235799999999999988653 11 1233557888899998764 589999999999
Q ss_pred CCcccccccc-CCcceEEEEEeeeC-CeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHH
Q 008405 463 GIKAFYMRLN-DDLKTVAAMDVLVP-KVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFE 540 (567)
Q Consensus 463 ~~~pf~~~~~-~d~~~~~~fDL~~~-~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiD 540 (567)
.++|||++.+ +++.++++||||++ |++||++|++|+++++++.++++++|++++.|+|||+|++||+|||||||||||
T Consensus 229 ~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGid 308 (335)
T PRK06462 229 GSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVE 308 (335)
T ss_pred hhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHH
Confidence 9999998754 45678899999997 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccCCCCCCC
Q 008405 541 RMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 541 RLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
||+|++||.+|||||++|||++|+..
T Consensus 309 RLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 309 RLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred HHHHHHcCCCchheeeeccCCCCCCC
Confidence 99999999999999999999999864
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=7.1e-75 Score=608.87 Aligned_cols=317 Identities=38% Similarity=0.645 Sum_probs=261.7
Q ss_pred hhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCC
Q 008405 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNP 225 (567)
Q Consensus 146 ~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p 225 (567)
.|+++++||||+|++..+++|++||.|++++|+||.++||+||+||+|+++++||+++.|.|.+.
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~--------------- 66 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSE--------------- 66 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEES---------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccc---------------
Confidence 46788999999999999999999999999999999999999999999999999999998887630
Q ss_pred CCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccce
Q 008405 226 PPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAF 305 (567)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~ 305 (567)
..+||++++|
T Consensus 67 ----------------------------------------------------------------------~~~~~~~~~~ 76 (335)
T PF00152_consen 67 ----------------------------------------------------------------------PGKYFGEPAY 76 (335)
T ss_dssp ----------------------------------------------------------------------TTEETTEEEE
T ss_pred ----------------------------------------------------------------------hhhhccccee
Confidence 1248999999
Q ss_pred eecchhhhHHHHh-hcCCcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccch
Q 008405 306 LTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDME 384 (567)
Q Consensus 306 L~~S~ql~le~~~-~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~ 384 (567)
|++|||+|||+++ +|++||||||||||||+++|.||+|||||||||++|.|++++|+++|+||+++++++.++... .
T Consensus 77 L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~-~- 154 (335)
T PF00152_consen 77 LTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKE-L- 154 (335)
T ss_dssp E-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHH-H-
T ss_pred cCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcc-c-
Confidence 9999999999975 559999999999999999999999999999999999999999999999999999988754111 1
Q ss_pred hhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCc-cc---------ccccccccccchhHHhhhccccccCc
Q 008405 385 FMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGK-HF---------ENKVEWGIDLASEHERYLTEVKFQKP 454 (567)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~-~~---------~~~~~~g~dl~~~~e~~L~e~~~~~p 454 (567)
.+ ...+..||++++|.||++.+.+...+.. .. .....+|..+...+|+.|++.....|
T Consensus 155 ~~------------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p 222 (335)
T PF00152_consen 155 SL------------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDP 222 (335)
T ss_dssp HT------------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSE
T ss_pred cc------------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCc
Confidence 10 1234578999999999999976421100 00 00112245577778888876667899
Q ss_pred EEEecCCCCCccccccccCCc-ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCC----cHHHHHHhhcCC
Q 008405 455 VIVYNYPKGIKAFYMRLNDDL-KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEP----YEWYLDLRRFGT 529 (567)
Q Consensus 455 ~fI~~yP~~~~pf~~~~~~d~-~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~----~~~yl~a~~~G~ 529 (567)
+||+|||..++|||++.++++ .++++||||++ |+||+||++|++++++|.+++++.+++++. |+|||+|+++|+
T Consensus 223 ~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~-g~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~ 301 (335)
T PF00152_consen 223 VFITDYPAEQSPFYKPPNDDDPGVAERFDLYIP-GGEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGM 301 (335)
T ss_dssp EEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEET-TEEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT-
T ss_pred EEEEecccccCcccccccccccccccceeEEEe-CEEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccC
Confidence 999999999999999877766 78999999996 589999999999999999999999988777 999999999999
Q ss_pred CCcceeeecHHHHHHHHcCCCCccccccccCCC
Q 008405 530 VKHSGFGLGFERMILFATGIDNIRDVIPFPRYP 562 (567)
Q Consensus 530 PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~ 562 (567)
|||||||||||||+|+++|++|||||++|||++
T Consensus 302 pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~ 334 (335)
T PF00152_consen 302 PPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDR 334 (335)
T ss_dssp -SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT
T ss_pred cccCcceehHHHHHHHHcCCCcHHheecCCCCC
Confidence 999999999999999999999999999999986
No 32
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-69 Score=561.53 Aligned_cols=408 Identities=25% Similarity=0.361 Sum_probs=313.2
Q ss_pred CCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc----ccccCCCCCcEEEEEeEEeCCCCC
Q 008405 39 PDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVEGMLKNPPEG 114 (567)
Q Consensus 39 ~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~----~~~~~l~~gs~V~V~G~v~~~~~~ 114 (567)
+++....+|++|.+||||...|.+| .+.|..|||..|. ||+.++.+.. .....++.||+|.|+|+|+.++..
T Consensus 39 ~el~~~~vg~kv~l~GWl~~~~~~k--~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp~~ 114 (628)
T KOG2411|consen 39 GELSVNDVGKKVVLCGWLELHRVHK--MLTFFNLRDAYGI--VQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRPNE 114 (628)
T ss_pred hhhccCccCCEEEEeeeeeeeeccc--cceEEEeeccCcc--eEEEecchhhhHHhcccCCCChhheEeeeeeEeccccc
Confidence 4444678999999999999999997 7999999999975 8888876652 123458999999999999887531
Q ss_pred ------CcceeEEEEeEEEEecCCCCCCCCCCCcC-------CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhh
Q 008405 115 ------TKQKIELRVQKVVDVGMVDPAKYPIPKTK-------LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQ 181 (567)
Q Consensus 115 ------~~~~lEl~~~~i~vls~~~~~~~Pi~~~~-------~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~ 181 (567)
.+|.+|+.+++++++++++ ..+|+.... .+......+|||++|.+.++..+|+||+++..||+||.
T Consensus 115 sin~km~tg~vev~~e~~~vln~~~-~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~ 193 (628)
T KOG2411|consen 115 SINSKMKTGFVEVVAEKVEVLNPVN-KKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLN 193 (628)
T ss_pred ccCccccccceEEEeeeeEEecCcc-CCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999986 566765332 22233346799999999999999999999999999997
Q ss_pred c-CCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhh
Q 008405 182 K-QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAIS 260 (567)
Q Consensus 182 ~-~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
+ .||+||+||+|.+.+||||+| |.|+|+...+.| ||
T Consensus 194 n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~~g~F--Ya---------------------------------------- 230 (628)
T KOG2411|consen 194 NRHGFVEVETPTLFKRTPGGARE-FVVPTRTPRGKF--YA---------------------------------------- 230 (628)
T ss_pred hhcCeeeccCcchhccCCCccce-eecccCCCCCce--ee----------------------------------------
Confidence 6 579999999999999999999 999987554432 44
Q ss_pred hhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHH-HhhcCCcEEEEecccccCCCCCC
Q 008405 261 ASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSHTS 339 (567)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~-~~~~~~rVFeI~~~FR~E~~~t~ 339 (567)
|.||||.|||+ |+.|++|+|||++|||+|+++.+
T Consensus 231 ---------------------------------------------LpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~D 265 (628)
T KOG2411|consen 231 ---------------------------------------------LPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRAD 265 (628)
T ss_pred ---------------------------------------------cCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcc
Confidence 55555566666 35569999999999999999988
Q ss_pred CCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHH
Q 008405 340 RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLE 419 (567)
Q Consensus 340 rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~ 419 (567)
|+ |||||+|+||+|.+.+++|+++|++|++++....+. -+..||+||||.||++.|.
T Consensus 266 RQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~----------------------~l~~PF~riTY~~Am~~YG 322 (628)
T KOG2411|consen 266 RQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGI----------------------QLPVPFPRITYADAMDKYG 322 (628)
T ss_pred cC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCC----------------------CCCCCcccccHHHHHHHhC
Confidence 87 899999999999999999999999999998765431 2568999999999998882
Q ss_pred H-------------------------HHHcC----------------------cccc-------------c----ccccc
Q 008405 420 V-------------------------AVKEG----------------------KHFE-------------N----KVEWG 435 (567)
Q Consensus 420 ~-------------------------~~~~~----------------------~~~~-------------~----~~~~g 435 (567)
. ...++ +.++ . ...|-
T Consensus 323 ~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~ 402 (628)
T KOG2411|consen 323 SDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWF 402 (628)
T ss_pred CCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhh
Confidence 0 00000 0000 0 00000
Q ss_pred cccc---hh---HH--h---------------------------------hhc----cccccCcEEEecCCCC-------
Q 008405 436 IDLA---SE---HE--R---------------------------------YLT----EVKFQKPVIVYNYPKG------- 463 (567)
Q Consensus 436 ~dl~---~~---~e--~---------------------------------~L~----e~~~~~p~fI~~yP~~------- 463 (567)
..+. .+ .| + .++ .+......||+|||..
T Consensus 403 ~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~ 482 (628)
T KOG2411|consen 403 KKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKN 482 (628)
T ss_pred hhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCC
Confidence 0000 00 00 0 000 0111357999999985
Q ss_pred ------CccccccccCCc-------c--eEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcC-CCCCCcH--HHHHHh
Q 008405 464 ------IKAFYMRLNDDL-------K--TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMG-LPLEPYE--WYLDLR 525 (567)
Q Consensus 464 ------~~pf~~~~~~d~-------~--~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g-~~~~~~~--~yl~a~ 525 (567)
..||.+++.+|- . ....|||++ ||.|+.|||.|+|+.+.|...++... ++.+.+. +.|+|+
T Consensus 483 q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~-NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~AL 561 (628)
T KOG2411|consen 483 QRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVV-NGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNAL 561 (628)
T ss_pred ceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEE-ccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHh
Confidence 248887765431 1 235699999 58899999999999999988888654 4433344 789999
Q ss_pred hcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 526 RFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 526 ~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
.+|+|||||||+|+|||+|+|||..||||||+||+..+
T Consensus 562 d~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~ 599 (628)
T KOG2411|consen 562 DMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTT 599 (628)
T ss_pred hcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCC
Confidence 99999999999999999999999999999999999753
No 33
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.2e-68 Score=556.66 Aligned_cols=300 Identities=21% Similarity=0.325 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHH
Q 008405 160 NTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVI 239 (567)
Q Consensus 160 ~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (567)
+..+++|++||+|++++|+||.++||+||+||+|+++.++|+++.|.+.
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~------------------------------- 50 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH------------------------------- 50 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec-------------------------------
Confidence 5678999999999999999999999999999999987555445555331
Q ss_pred HhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-h
Q 008405 240 KEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-A 318 (567)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~ 318 (567)
.+||++++||++|||+|+|++ +
T Consensus 51 ---------------------------------------------------------~~~~~~~~yL~~Spql~~k~ll~ 73 (329)
T cd00775 51 ---------------------------------------------------------HNALDMDLYLRIAPELYLKRLIV 73 (329)
T ss_pred ---------------------------------------------------------cCCCCcceeeccCHHHHHHHHHh
Confidence 137899999999999999996 5
Q ss_pred hcCCcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhh
Q 008405 319 CAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRL 398 (567)
Q Consensus 319 ~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 398 (567)
++++||||||||||||++ ++||+|||||||||++|.|++++|+++|++|++++..+.+.+ ++.+.+..
T Consensus 74 ~g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~--------- 141 (329)
T cd00775 74 GGFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKE--------- 141 (329)
T ss_pred cCCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCcc---------
Confidence 689999999999999999 589999999999999999999999999999999999887653 33332221
Q ss_pred hhccCCCcceecHHHHHHHHHHHHHcC-c-----------------ccccccccccccchhHHhhhccccccCcEEEecC
Q 008405 399 RMVASTPFERITYTEAVELLEVAVKEG-K-----------------HFENKVEWGIDLASEHERYLTEVKFQKPVIVYNY 460 (567)
Q Consensus 399 ~~~~~~pf~rity~eA~~~l~~~~~~~-~-----------------~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~y 460 (567)
...+.||+|+||.||++.+.+..... . .+.....|+..+...+++++ ++.+++|+||+||
T Consensus 142 -~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~v-e~~~~~p~fi~~y 219 (329)
T cd00775 142 -LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFV-EPTLIQPTFIIDH 219 (329)
T ss_pred -ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh-ccccCCCEEEECC
Confidence 12347999999999999875421000 0 00000012211222333443 3456799999999
Q ss_pred CCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHc------CCCCCC--cHHHHHHhhcCCCCc
Q 008405 461 PKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM------GLPLEP--YEWYLDLRRFGTVKH 532 (567)
Q Consensus 461 P~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~------g~~~~~--~~~yl~a~~~G~PP~ 532 (567)
|+.++|||+..+++++++++||||++ |.||+||++|+++++++.+++++. +.++.. ++|||+|++||+|||
T Consensus 220 P~~~~~f~~~~~~~~~~~~rfdl~~~-G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~ 298 (329)
T cd00775 220 PVEISPLAKRHRSNPGLTERFELFIC-GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPT 298 (329)
T ss_pred ChHhCcCcCcCCCCCCeeEEEEeEEC-CEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCC
Confidence 99999998876667789999999995 679999999999999998888763 555543 589999999999999
Q ss_pred ceeeecHHHHHHHHcCCCCccccccccCCC
Q 008405 533 SGFGLGFERMILFATGIDNIRDVIPFPRYP 562 (567)
Q Consensus 533 gG~GiGiDRLlMll~g~~nIrdvi~FPr~~ 562 (567)
||||||||||+|+++|++|||||++||+++
T Consensus 299 ~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 299 GGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred CcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 999999999999999999999999999986
No 34
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=6e-66 Score=523.57 Aligned_cols=260 Identities=27% Similarity=0.478 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhH
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEA 245 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (567)
|++||+|++.+|+||.++||+||+||+|+++++||+++.|.+.
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~------------------------------------- 43 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK------------------------------------- 43 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee-------------------------------------
Confidence 5799999999999999999999999999998888877766542
Q ss_pred HHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhcc--CccceeecchhhhHHHH-hhcCC
Q 008405 246 VAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFF--ARQAFLTVSGQLQVETY-ACAVS 322 (567)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf--~~~~~L~~S~ql~le~~-~~~~~ 322 (567)
|+ |+++||++|||+|+|++ +++++
T Consensus 44 -----------------------------------------------------~~~~g~~~~L~~Spql~~~~~~~~~~~ 70 (269)
T cd00669 44 -----------------------------------------------------YNALGLDYYLRISPQLFKKRLMVGGLD 70 (269)
T ss_pred -----------------------------------------------------ecCCCCcEEeecCHHHHHHHHHhcCCC
Confidence 34 78899999999999996 57799
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhcc
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 402 (567)
|||+||||||+|+ .+.||++||||||||++|.|++++|+++|++|+++++.+.+.+...+... ...+
T Consensus 71 ~vf~i~~~fR~e~-~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~------------~~~~ 137 (269)
T cd00669 71 RVFEINRNFRNED-LRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE------------LEDF 137 (269)
T ss_pred cEEEEecceeCCC-CCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc------------cccc
Confidence 9999999999995 48999999999999999999999999999999999999887654433210 1135
Q ss_pred CCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccC-CcceEEEE
Q 008405 403 STPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAM 481 (567)
Q Consensus 403 ~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~-d~~~~~~f 481 (567)
+.||+||||.||++.+ .+|+||+|||..++|||++.++ +++++++|
T Consensus 138 ~~~~~rit~~ea~~~~---------------------------------~~p~fi~d~P~~~~~fy~~~~~~~~~~~~~f 184 (269)
T cd00669 138 GLPFPRLTYREALERY---------------------------------GQPLFLTDYPAEMHSPLASPHDVNPEIADAF 184 (269)
T ss_pred CCCceEeeHHHHHHHh---------------------------------CCceEEECCCcccCCCCCCcCCCCCCeEEEE
Confidence 6799999999999865 1699999999999999987654 46789999
Q ss_pred EeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC----CcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 482 DVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE----PYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 482 DL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
|||++ |+||+||++|+|++++|.+++++.+++++ .|+|||+|++||+|||||||||||||+|+++|.+|||||++
T Consensus 185 dl~~~-g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~ 263 (269)
T cd00669 185 DLFIN-GVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIA 263 (269)
T ss_pred EEeeC-CEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHccc
Confidence 99995 57999999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 008405 558 FPRYP 562 (567)
Q Consensus 558 FPr~~ 562 (567)
|||++
T Consensus 264 FPr~~ 268 (269)
T cd00669 264 FPKMR 268 (269)
T ss_pred CCCCC
Confidence 99986
No 35
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=2e-65 Score=528.87 Aligned_cols=279 Identities=24% Similarity=0.330 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC-CCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhh
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS-DCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGE 244 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~-~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (567)
+++||.|++++|+||.++||+||+||+|+.+ .+||++++|.+.-
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y----------------------------------- 45 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEF----------------------------------- 45 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeec-----------------------------------
Confidence 4789999999999999999999999999987 4666667664320
Q ss_pred HHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHH-HhhcCCc
Q 008405 245 AVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSN 323 (567)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~-~~~~~~r 323 (567)
|..+.+++++||++|||||+|+ +++|++|
T Consensus 46 --------------------------------------------------~~~~~~~~~~yL~~Spql~lk~ll~~g~~r 75 (304)
T TIGR00462 46 --------------------------------------------------LGPDGEGRPLYLQTSPEYAMKRLLAAGSGP 75 (304)
T ss_pred --------------------------------------------------cCCCCCCcceeeecCHHHHHHHHHhccCCC
Confidence 0012356789999999999996 5778999
Q ss_pred EEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccC
Q 008405 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403 (567)
Q Consensus 324 VFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 403 (567)
|||||||||||++ ++||||||||||||++|.|++|+|+++|+||++++.. ++
T Consensus 76 Vfeigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~---------------------------~~ 127 (304)
T TIGR00462 76 IFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD---------------------------PF 127 (304)
T ss_pred EEEEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------------cC
Confidence 9999999999999 5899999999999999999999999999999999863 13
Q ss_pred CCcceecHHHHHHHHHHHHHcC----------cccccccccccccchhHHhhhc---cccc--cCcEEEecCCCCCcccc
Q 008405 404 TPFERITYTEAVELLEVAVKEG----------KHFENKVEWGIDLASEHERYLT---EVKF--QKPVIVYNYPKGIKAFY 468 (567)
Q Consensus 404 ~pf~rity~eA~~~l~~~~~~~----------~~~~~~~~~g~dl~~~~e~~L~---e~~~--~~p~fI~~yP~~~~pf~ 468 (567)
.||++|||.||++.+.+..... ++......++.|+...+|++++ ++.+ ++|+||+|||..++|||
T Consensus 128 ~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~ 207 (304)
T TIGR00462 128 APWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALA 207 (304)
T ss_pred CCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCc
Confidence 5899999999987554321000 0011122345678888888875 3344 57999999999999998
Q ss_pred ccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH-------cCCCCCCc-HHHHHHhhcCCCCcceeeecHH
Q 008405 469 MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED-------MGLPLEPY-EWYLDLRRFGTVKHSGFGLGFE 540 (567)
Q Consensus 469 ~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~-------~g~~~~~~-~~yl~a~~~G~PP~gG~GiGiD 540 (567)
+..++++.+++|||||++ |.||++|++|+++++++.+++++ .|+++.++ +|||+|++||+|||||||||||
T Consensus 208 ~~~~~~~~~~~rfdl~~~-G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGie 286 (304)
T TIGR00462 208 RISPDDPRVAERFELYIK-GLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVD 286 (304)
T ss_pred cccCCCCCeeEEEEEEEC-CEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHH
Confidence 765666778999999995 56999999888888888777754 78888888 6899999999999999999999
Q ss_pred HHHHHHcCCCCccccccc
Q 008405 541 RMILFATGIDNIRDVIPF 558 (567)
Q Consensus 541 RLlMll~g~~nIrdvi~F 558 (567)
||+|+++|.+|||||++|
T Consensus 287 RL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 287 RLLMLALGADSIDDVLAF 304 (304)
T ss_pred HHHHHHhCCCchhhcccC
Confidence 999999999999999998
No 36
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=2.1e-61 Score=492.92 Aligned_cols=268 Identities=30% Similarity=0.463 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhH
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEA 245 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (567)
|++||+|+++||+||.++||+||+||+|+.+++|||++ |.+...
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~----------------------------------- 44 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSR----------------------------------- 44 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccc-----------------------------------
Confidence 47899999999999999999999999999999999977 654310
Q ss_pred HHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcE
Q 008405 246 VAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNV 324 (567)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rV 324 (567)
...+..+||++|||+|||++ ++|++||
T Consensus 45 ----------------------------------------------------~~~~~~~~L~~Spql~lk~ll~~g~~~v 72 (280)
T cd00777 45 ----------------------------------------------------LHPGKFYALPQSPQLFKQLLMVSGFDRY 72 (280)
T ss_pred ----------------------------------------------------cCCCceeecccCHHHHHHHHHhcCcCcE
Confidence 00122345999999999986 5789999
Q ss_pred EEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCC
Q 008405 325 YTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAST 404 (567)
Q Consensus 325 FeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 404 (567)
|+||||||+|++++.|| +||||||||++|.|++++|+++|+||+.++..+.+. ....
T Consensus 73 ~~i~~~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~ 129 (280)
T cd00777 73 FQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTT 129 (280)
T ss_pred EEeccceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCC
Confidence 99999999999987766 599999999999999999999999999999877642 1357
Q ss_pred CcceecHHHHHHHHHHHHHcCcccccccccccccch---hHHhhhccccccCcEEEec-CCCCCc---cccccccCCcce
Q 008405 405 PFERITYTEAVELLEVAVKEGKHFENKVEWGIDLAS---EHERYLTEVKFQKPVIVYN-YPKGIK---AFYMRLNDDLKT 477 (567)
Q Consensus 405 pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~---~~e~~L~e~~~~~p~fI~~-yP~~~~---pf~~~~~~d~~~ 477 (567)
||+||||.||++.+. ....|+.|+.. ..+ .++++++++ ||.... +++ +.++++.+
T Consensus 130 p~~rity~eA~~~~~----------~~~~~~~d~~~~~~~~~-------~~~~~~~~~pf~~~~~~~~~~~-~~~~~~~~ 191 (280)
T cd00777 130 PFPRMTYAEAMERYG----------FKFLWIVDFPLFEWDEE-------EGRLVSAHHPFTAPKEEDLDLL-EKDPEDAR 191 (280)
T ss_pred CCceeeHHHHHHHhC----------CCCccccCCcccCChhH-------HHHHHHHhCCCcCCCcccchhh-hcCCccCe
Confidence 999999999998752 12335544321 111 122333444 443322 232 22222368
Q ss_pred EEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCC----CCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcc
Q 008405 478 VAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLP----LEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIR 553 (567)
Q Consensus 478 ~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~----~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIr 553 (567)
+++||||++ |.||+||++|++++++|.+++++.|++ ++.|+|||+|++||+|||||||||||||+|++||.+|||
T Consensus 192 ~~~fdl~~~-G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Ir 270 (280)
T cd00777 192 AQAYDLVLN-GVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIR 270 (280)
T ss_pred eEEEEEEeC-CEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchh
Confidence 999999996 569999999999999999999999988 456899999999999999999999999999999999999
Q ss_pred ccccccCCCC
Q 008405 554 DVIPFPRYPG 563 (567)
Q Consensus 554 dvi~FPr~~~ 563 (567)
||++|||+.+
T Consensus 271 dv~~FPr~~~ 280 (280)
T cd00777 271 DVIAFPKTQN 280 (280)
T ss_pred eEeecCCCCC
Confidence 9999999863
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=4.6e-59 Score=481.92 Aligned_cols=273 Identities=22% Similarity=0.327 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 008405 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (567)
Q Consensus 163 ~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (567)
..+|++|++|++.||+||.++||+||+||+|+..+.+|+... .
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~-~------------------------------------ 44 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLV-P------------------------------------ 44 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCC-c------------------------------------
Confidence 368999999999999999999999999999987654443221 1
Q ss_pred hhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhcc------CccceeecchhhhHHH
Q 008405 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFF------ARQAFLTVSGQLQVET 316 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf------~~~~~L~~S~ql~le~ 316 (567)
|..+|| |+.+||.+|||+|+|+
T Consensus 45 ----------------------------------------------------f~~~y~~~~~~~~~~~~L~~SPe~~~kr 72 (306)
T PRK09350 45 ----------------------------------------------------FETRFVGPGASQGKTLWLMTSPEYHMKR 72 (306)
T ss_pred ----------------------------------------------------eeeeeccccccCCcceEEecCHHHHHHH
Confidence 122234 7889999999999997
Q ss_pred -HhhcCCcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhh
Q 008405 317 -YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCI 395 (567)
Q Consensus 317 -~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~ 395 (567)
++.+++|||+||||||||++ +.||++||||||||++|.|++++|+++|+||+.++..
T Consensus 73 ~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~--------------------- 130 (306)
T PRK09350 73 LLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--------------------- 130 (306)
T ss_pred HhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc---------------------
Confidence 46779999999999999999 8999999999999999999999999999999988631
Q ss_pred hhhhhccCCCcceecHHHHHHHHHHHHHcC---cccc-ccccccc--------ccchhHHh---hhccccc--cCcEEEe
Q 008405 396 NRLRMVASTPFERITYTEAVELLEVAVKEG---KHFE-NKVEWGI--------DLASEHER---YLTEVKF--QKPVIVY 458 (567)
Q Consensus 396 ~~l~~~~~~pf~rity~eA~~~l~~~~~~~---~~~~-~~~~~g~--------dl~~~~e~---~L~e~~~--~~p~fI~ 458 (567)
.||++++|.||+..+.+..... ..+. ...++|. ++....++ .++|+.+ +.|+||+
T Consensus 131 --------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~ 202 (306)
T PRK09350 131 --------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVY 202 (306)
T ss_pred --------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3688999999987664320000 0000 0012222 23333333 2345555 3699999
Q ss_pred cCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH-------cCCCCCCc-HHHHHHhhcCCC
Q 008405 459 NYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED-------MGLPLEPY-EWYLDLRRFGTV 530 (567)
Q Consensus 459 ~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~-------~g~~~~~~-~~yl~a~~~G~P 530 (567)
|||..++|||++.+++++++++||||++ |.||++|++|+++++++.+++++ .|.++.++ +|||+|++||+|
T Consensus 203 ~yP~~~~~~a~~~~~~~~~~~rfdl~i~-G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~p 281 (306)
T PRK09350 203 HFPASQAALAKISTEDHRVAERFEVYFK-GIELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLP 281 (306)
T ss_pred cCccccCccccccCCCCCeeEEEEEEEC-CEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCC
Confidence 9999999998766667789999999995 66999999999999999998864 78888888 469999999999
Q ss_pred CcceeeecHHHHHHHHcCCCCcccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
||||||||||||+|++||++|||||
T Consensus 282 p~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 282 DCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCCceEecHHHHHHHHcCCCCcccC
Confidence 9999999999999999999999997
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-49 Score=391.16 Aligned_cols=283 Identities=23% Similarity=0.315 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhh
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGE 244 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (567)
.+..|++|++.||+||.++||+||+||.|..+. .--.....+.|..- +|.
T Consensus 15 ~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~-vtd~hL~~F~Te~~-----------~~~------------------ 64 (322)
T COG2269 15 NLLKRAAIIAAIRRFFAERGVLEVETPALSVAP-VTDIHLHPFETEFL-----------GPG------------------ 64 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEecchHhhcCC-CCccceeeeeeEEe-----------ccC------------------
Confidence 478999999999999999999999999998762 22222222222110 000
Q ss_pred HHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCc
Q 008405 245 AVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSN 323 (567)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~r 323 (567)
++ =+.+.||+.||++|++.+ +++.++
T Consensus 65 ----------------------------------------------~~-------~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 65 ----------------------------------------------GA-------KGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred ----------------------------------------------cc-------ccceeeeecCcHHHHHHHHHccCCc
Confidence 00 034579999999999985 778999
Q ss_pred EEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccC
Q 008405 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403 (567)
Q Consensus 324 VFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 403 (567)
|||||+||||++. +++|+|||||||||..+.||.-+|+.+.+|++.++. |
T Consensus 92 ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~-----~------------------------ 141 (322)
T COG2269 92 IFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE-----C------------------------ 141 (322)
T ss_pred chhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHc-----c------------------------
Confidence 9999999999995 899999999999999999999999999999988875 1
Q ss_pred CCcceecHHHHHHHHHHHHHcC----------cccccccccccccchhHHhhh---ccccc--cCcEEEecCCCCCcccc
Q 008405 404 TPFERITYTEAVELLEVAVKEG----------KHFENKVEWGIDLASEHERYL---TEVKF--QKPVIVYNYPKGIKAFY 468 (567)
Q Consensus 404 ~pf~rity~eA~~~l~~~~~~~----------~~~~~~~~~g~dl~~~~e~~L---~e~~~--~~p~fI~~yP~~~~pf~ 468 (567)
.+++++||.|||..+.++..-. ........-+.+....+++.+ +|+.+ ++|+||+|||..+++++
T Consensus 142 ~~~E~ls~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA 221 (322)
T COG2269 142 VEAERLSYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALA 221 (322)
T ss_pred CCcceeeHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHhh
Confidence 2478999999998875431000 000001111122333344443 34444 68999999999999997
Q ss_pred ccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH-------HcCCCCCC-cHHHHHHhhcCCCCcceeeecHH
Q 008405 469 MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE-------DMGLPLEP-YEWYLDLRRFGTVKHSGFGLGFE 540 (567)
Q Consensus 469 ~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~-------~~g~~~~~-~~~yl~a~~~G~PP~gG~GiGiD 540 (567)
...+.|+.+.+|||||+ .|.||+||.-...|.++|.++++ ..|.+.-+ +++||.|++. ||||+|+++|||
T Consensus 222 ~i~~~D~rVAERFElY~-kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~D 299 (322)
T COG2269 222 QISTGDPRVAERFELYY-KGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFD 299 (322)
T ss_pred ccCCCCcchhhhhhhee-eeeeecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHH
Confidence 66677778889999999 67788888866666666666554 34544433 5799999998 999999999999
Q ss_pred HHHHHHcCCCCccccccccCCC
Q 008405 541 RMILFATGIDNIRDVIPFPRYP 562 (567)
Q Consensus 541 RLlMll~g~~nIrdvi~FPr~~ 562 (567)
||+|+++|.++|.+|+.||...
T Consensus 300 RLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 300 RLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred HHHHHHcCcchHHHHhhccccc
Confidence 9999999999999999999863
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.78 E-value=1e-18 Score=160.24 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=91.9
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc---cccCCCCCcEEEEEeEEeCCCCC------
Q 008405 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVYVEGMLKNPPEG------ 114 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~---~~~~l~~gs~V~V~G~v~~~~~~------ 114 (567)
.+.|++|+|+|||+++|.+| +++|++|+|+++. +|+|++.+..+ +...|+.||+|.|+|++..++.+
T Consensus 11 ~~~g~~V~i~Gwv~~~R~~g--k~~Fi~LrD~~g~--~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~ 86 (135)
T cd04317 11 SHVGQEVTLCGWVQRRRDHG--GLIFIDLRDRYGI--VQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGTVNPKL 86 (135)
T ss_pred hHCCCEEEEEEeEehhcccC--CEEEEEEecCCee--EEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCCccccCCCC
Confidence 56799999999999999999 7999999999864 99999865422 34579999999999999986521
Q ss_pred CcceeEEEEeEEEEecCCCCCCCCCCCcC---CChhhhccccccccCcHH
Q 008405 115 TKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNT 161 (567)
Q Consensus 115 ~~~~lEl~~~~i~vls~~~~~~~Pi~~~~---~~~e~lr~~~~Lr~R~~~ 161 (567)
.++++||.+++++++++|. ++|+..+. .+.++..++|||++|++.
T Consensus 87 ~~~~~El~~~~i~vl~~~~--~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 87 PTGEIEVVASELEVLNKAK--TLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred CCCcEEEEEeEEEEEECCC--CCCCccccccCCCHHHhhhcceeecCCCC
Confidence 3578999999999999983 57775543 356777889999999863
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.73 E-value=3.4e-17 Score=143.16 Aligned_cols=99 Identities=29% Similarity=0.445 Sum_probs=83.7
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc--ccc--ccCCCCCcEEEEEeEEeCCCCCCcceeEEEEe
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--ADL--GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQ 124 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~--~~~--~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~ 124 (567)
+|+|+|||+++|.+| +++|++|||++|. +|+|++++. ..+ ...++.||+|.|+|++.+++. ..+++||.++
T Consensus 1 ~V~v~Gwv~~~R~~g--k~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~-~~~~~Ei~~~ 75 (103)
T cd04319 1 KVTLAGWVYRKREVG--KKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPR-APGGAEVHGE 75 (103)
T ss_pred CEEEEEEEEeEEcCC--CeEEEEEecCCee--EEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCC-CCCCEEEEEE
Confidence 389999999999999 7899999999865 999998652 112 246899999999999998874 5678999999
Q ss_pred EEEEecCCCCCCCCCCCcCCChhhhcccccc
Q 008405 125 KVVDVGMVDPAKYPIPKTKLTLEFLRDRIPF 155 (567)
Q Consensus 125 ~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~L 155 (567)
+++++|++. ++|++.+. +.|+++++|||
T Consensus 76 ~i~vl~~a~--~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 76 KLEIIQNVE--FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEEecCC--CCccCCCC-CHHHHhhccCC
Confidence 999999985 68988664 88889999886
No 41
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.72 E-value=4.9e-17 Score=143.40 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=79.4
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc---cc---cccCCCCCcEEEEEeEEeCCCCCCcceeEEE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---AD---LGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~---~~---~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~ 122 (567)
+|+|+|||+++|.+| +++|++|||+++ .||+|++.+. .. +...|+.||+|.|+|++.+++. +++||.
T Consensus 1 ~v~v~GwV~~~R~~g--~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~---g~~El~ 73 (108)
T cd04322 1 EVSVAGRIMSKRGSG--KLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTKT---GELSIF 73 (108)
T ss_pred CEEEEEEEEEEecCC--CeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecCC---CCEEEE
Confidence 488999999999999 799999999985 5999998653 22 3334999999999999999884 689999
Q ss_pred EeEEEEecCCCCCCCCCCCcCC---Chhhhcccccccc
Q 008405 123 VQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRP 157 (567)
Q Consensus 123 ~~~i~vls~~~~~~~Pi~~~~~---~~e~lr~~~~Lr~ 157 (567)
+++++++|+|. +|+|.+.+ +.|+.+++|||++
T Consensus 74 ~~~~~ils~~~---~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 74 VKEFTLLSKSL---RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred eCEeEEeeccC---CCCCCCccCcCChhheeecccccC
Confidence 99999999974 45554332 4566667788764
No 42
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.71 E-value=9.4e-17 Score=141.60 Aligned_cols=94 Identities=21% Similarity=0.375 Sum_probs=79.2
Q ss_pred CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-----ccccCCCCCcEEEEEeEEeCCCCCCc
Q 008405 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTCVYVEGMLKNPPEGTK 116 (567)
Q Consensus 42 ~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-----~~~~~l~~gs~V~V~G~v~~~~~~~~ 116 (567)
.....|++|+|+|||+++|.+| +++|++|||+++. +|+|++++.. .+...|+.||+|.|+|++.+++. ..
T Consensus 7 ~~~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~ 81 (108)
T cd04316 7 TPELDGEEVTVAGWVHEIRDLG--GIKFVILRDREGI--VQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPK-AP 81 (108)
T ss_pred chhhCCCEEEEEEEEEeeeccC--CeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCC-CC
Confidence 3466899999999999999999 7999999999875 9999986531 13457999999999999999874 45
Q ss_pred ceeEEEEeEEEEecCCCCCCCCCCC
Q 008405 117 QKIELRVQKVVDVGMVDPAKYPIPK 141 (567)
Q Consensus 117 ~~lEl~~~~i~vls~~~~~~~Pi~~ 141 (567)
+++||+++++++++++. .++|++.
T Consensus 82 ~~~Ei~~~~i~il~~~~-~~~P~~~ 105 (108)
T cd04316 82 NGVEIIPEEIEVLSEAK-TPLPLDP 105 (108)
T ss_pred CCEEEEEeEEEEEeCCC-CCCCcCc
Confidence 78999999999999986 4688754
No 43
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.64 E-value=1.9e-15 Score=131.83 Aligned_cols=89 Identities=27% Similarity=0.399 Sum_probs=73.0
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc----cc---cccCCCCCcEEEEEeEEeCCCCC----Ccc
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV----AD---LGQLVPTGTCVYVEGMLKNPPEG----TKQ 117 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~----~~---~~~~l~~gs~V~V~G~v~~~~~~----~~~ 117 (567)
+|+|+|||+++|.+||+ ++|++|||+++. ||+|++++. .. +.+.|+.||+|.|+|++.+++.. .++
T Consensus 1 ~V~i~Gwv~~~R~~g~k-~~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 77 (102)
T cd04320 1 EVLIRARVHTSRAQGAK-LAFLVLRQQGYT--IQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQ 77 (102)
T ss_pred CEEEEEEEEEeecCCCc-eEEEEEecCCce--EEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcC
Confidence 38999999999999974 999999999864 999998653 11 23569999999999999987642 237
Q ss_pred eeEEEEeEEEEecCCCCCCCCCCC
Q 008405 118 KIELRVQKVVDVGMVDPAKYPIPK 141 (567)
Q Consensus 118 ~lEl~~~~i~vls~~~~~~~Pi~~ 141 (567)
++||+++++++|++|. .++|++.
T Consensus 78 ~~El~~~~i~il~~~~-~~~P~~~ 100 (102)
T cd04320 78 DVELHIEKIYVVSEAA-EPLPFQL 100 (102)
T ss_pred cEEEEEEEEEEEecCC-CCCCCCC
Confidence 8999999999999985 4677653
No 44
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.60 E-value=8.8e-15 Score=122.50 Aligned_cols=79 Identities=42% Similarity=0.742 Sum_probs=68.6
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc--cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~--~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i 126 (567)
.|+|+|||+++|.+| +++|++|||+++.++||+|++++... ..+.++.||+|.|+|.+..++. .++++||+++++
T Consensus 1 ~v~v~Gwv~~~R~~g--~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~-~~~~~El~~~~i 77 (82)
T cd04318 1 EVTVNGWVRSVRDSK--KISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSPG-AKQPFELQAEKI 77 (82)
T ss_pred CEEEEEeEEEEEcCC--cEEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCCC-CCCCEEEEEEEE
Confidence 378999999999999 79999999999866799999876432 3456899999999999999884 468999999999
Q ss_pred EEec
Q 008405 127 VDVG 130 (567)
Q Consensus 127 ~vls 130 (567)
++++
T Consensus 78 ~il~ 81 (82)
T cd04318 78 EVLG 81 (82)
T ss_pred EEec
Confidence 9986
No 45
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.56 E-value=2.3e-14 Score=121.23 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=66.5
Q ss_pred EEEEEEEEEeeee-cCCceeEEEEEecCCCCceeEEEEeCCcccc--ccCCCCCcEEEEEeEEeCCCCC---CcceeEEE
Q 008405 49 QVRVGGWVKTGRE-QGKGSFAFLEVNDGSCPANLQVIVDKDVADL--GQLVPTGTCVYVEGMLKNPPEG---TKQKIELR 122 (567)
Q Consensus 49 ~V~v~GwV~~iR~-~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~--~~~l~~gs~V~V~G~v~~~~~~---~~~~lEl~ 122 (567)
+|+|+|||+++|. +| +++|++|||++| ..+||+++++...| .+.++.||+|.|+|++.+++.. .++++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~--~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVK--KLSFADLRDPNG-DIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCC--ceEEEEEECCCC-CEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3889999999999 56 699999999998 46999998654333 2468999999999999998742 23889999
Q ss_pred EeEEEEecC
Q 008405 123 VQKVVDVGM 131 (567)
Q Consensus 123 ~~~i~vls~ 131 (567)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999974
No 46
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.54 E-value=3.3e-14 Score=119.60 Aligned_cols=79 Identities=29% Similarity=0.424 Sum_probs=66.7
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc---ccccCCCCCcEEEEEeEEeCCCCC--CcceeEEEE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEGMLKNPPEG--TKQKIELRV 123 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~---~~~~~l~~gs~V~V~G~v~~~~~~--~~~~lEl~~ 123 (567)
+|+|+|||+++|.+| +++|++|||+++. +|++++.+.. .+.+.|+.||+|.|+|++.+++.+ +.+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g--~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQK--KLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCC--CcEEEEEEcCCeE--EEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 389999999999998 7999999999875 9999976532 234579999999999999998742 167899999
Q ss_pred eEEEEecC
Q 008405 124 QKVVDVGM 131 (567)
Q Consensus 124 ~~i~vls~ 131 (567)
++++++|.
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999974
No 47
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.54 E-value=3.6e-14 Score=119.61 Aligned_cols=79 Identities=30% Similarity=0.580 Sum_probs=67.2
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc----ccccCCCCCcEEEEEeEEeCCCCC--CcceeEEE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVEGMLKNPPEG--TKQKIELR 122 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~----~~~~~l~~gs~V~V~G~v~~~~~~--~~~~lEl~ 122 (567)
.|+|+|||+++|.+| +++|++|||+++ .+|++++.+.. .+...|+.||+|.|+|.+.+++.. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g--~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHG--GLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCC--CEEEEEEEeCCe--eEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999 799999999986 49999986542 234579999999999999998731 46899999
Q ss_pred EeEEEEecC
Q 008405 123 VQKVVDVGM 131 (567)
Q Consensus 123 ~~~i~vls~ 131 (567)
+++++++++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999974
No 48
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.42 E-value=6.7e-12 Score=126.02 Aligned_cols=206 Identities=18% Similarity=0.148 Sum_probs=122.6
Q ss_pred CcEEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhh
Q 008405 322 SNVYTFGPTFRA-EHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRM 400 (567)
Q Consensus 322 ~rVFeI~~~FR~-E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 400 (567)
+.+|+=..+.|. |+. +..|.-==-|-|||.....-+-.++.+.+.++.++..+...- .++...++ .+..
T Consensus 82 eGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te----~~~~~~y~-----~~~~ 151 (309)
T cd00645 82 EGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETE----LEVNEKYP-----QLEP 151 (309)
T ss_pred ceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHH----HHHHHHch-----hhhh
Confidence 567877777776 565 688976666777777654433334444444445444433210 11111111 0111
Q ss_pred ccCCCcceecHHHHHHHHHHHHHcCcccccccccccccch-hHHhhhccccccCcEEEecCCCCCccc---cccccCCcc
Q 008405 401 VASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLAS-EHERYLTEVKFQKPVIVYNYPKGIKAF---YMRLNDDLK 476 (567)
Q Consensus 401 ~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~-~~e~~L~e~~~~~p~fI~~yP~~~~pf---~~~~~~d~~ 476 (567)
.+. +.|+|-.+-+++..- + +|+. +-|..++.. ..-+||+.-=..++.= -.+.++-+.
T Consensus 152 ~Lp---~~i~FitsqeL~~~Y----------P----~l~~keRE~~i~ke--~gaVFi~~IG~~L~~g~~Hd~RapDYDD 212 (309)
T cd00645 152 ILP---EEITFITSQELEDRY----------P----DLTPKEREDAICKE--HGAVFIIGIGGKLSDGKKHDGRAPDYDD 212 (309)
T ss_pred cCC---CceEEecHHHHHHHC----------C----CCCHHHHHHHHHHH--hCcEEEEeccCcCCCCCcCCCCCCCCcC
Confidence 122 234443332222110 0 2322 234444432 4567776544333221 111122234
Q ss_pred eEEEEEeee-----CCeeEeecchhhhhcHHHHHHHHHHcC-CCCCCcHHHHHHhhcC-CCCcceeeecHHHHHHHHcCC
Q 008405 477 TVAAMDVLV-----PKVGELIGGSQREERYDVIKSRIEDMG-LPLEPYEWYLDLRRFG-TVKHSGFGLGFERMILFATGI 549 (567)
Q Consensus 477 ~~~~fDL~~-----~~~~El~~G~~r~~~~~~l~~~~~~~g-~~~~~~~~yl~a~~~G-~PP~gG~GiGiDRLlMll~g~ 549 (567)
+..+=|+++ ....||.++++|.++ +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|||.
T Consensus 213 W~LNGDil~w~~~l~~a~ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k 290 (309)
T cd00645 213 WTLNGDILVWNPVLQRAFELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQK 290 (309)
T ss_pred ccccceEEEEchhcCceeeecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhcc
Confidence 555566665 245899999999998 88899999999 56666666 9999989 999999999999999999999
Q ss_pred CCccccccc
Q 008405 550 DNIRDVIPF 558 (567)
Q Consensus 550 ~nIrdvi~F 558 (567)
.+|.+|++=
T Consensus 291 ~HIgEVqas 299 (309)
T cd00645 291 AHIGEVQAS 299 (309)
T ss_pred chhcceeec
Confidence 999999853
No 49
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.39 E-value=3.2e-12 Score=136.06 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=35.8
Q ss_pred CcHHHHHHHHH-----HHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 158 RTNTIAAVARI-----RNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 158 R~~~~~~i~r~-----Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
|.+..+++|.+ .+.+.+++|++|...||.||.||.|+..
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~e 233 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPA 233 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecH
Confidence 56778899999 9999999999999999999999999753
No 50
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.36 E-value=4.6e-12 Score=134.59 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=32.2
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCC--HHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD--LKDDM 361 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d--~~~lm 361 (567)
-|+|+||+|||+|.. +.+|+.||+|++++....+ +.|+.
T Consensus 319 qKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDle 359 (453)
T TIGR02367 319 IKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLE 359 (453)
T ss_pred eeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHH
Confidence 399999999999987 6889999999999987643 44443
No 51
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.5e-12 Score=129.31 Aligned_cols=128 Identities=26% Similarity=0.449 Sum_probs=88.0
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeec--cCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhh
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA--FSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLR 399 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a--~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 399 (567)
-|+|.+|+|||+|.. +.+|+|||.|+|--.. ..++.+|+-+++++++.++..-. ++
T Consensus 193 ~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~~-----~v---------------- 250 (335)
T COG0016 193 IKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGEDV-----KV---------------- 250 (335)
T ss_pred ceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCCc-----ce----------------
Confidence 399999999999988 5899999999995333 34567777766666666543100 00
Q ss_pred hccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccCCcceEE
Q 008405 400 MVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA 479 (567)
Q Consensus 400 ~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~d~~~~~ 479 (567)
.| +| +-=||..+ +.
T Consensus 251 ----------Rf-----------------------------------------rp--------syFPFTEP-------S~ 264 (335)
T COG0016 251 ----------RF-----------------------------------------RP--------SYFPFTEP-------SA 264 (335)
T ss_pred ----------Ee-----------------------------------------ec--------CCCCCCCC-------eE
Confidence 00 00 00155321 34
Q ss_pred EEEeeeC---CeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008405 480 AMDVLVP---KVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 480 ~fDL~~~---~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
..|++++ +..||+|+++- +++.+ +..|+++++|..| .||||+|||.|+.+|+++||+.
T Consensus 265 Evdv~~~~~~~WlEi~G~Gmv--~P~VL----~~~G~~~~~~~Gf------------AfGlGlERlAMLkygI~DIR~l 325 (335)
T COG0016 265 EVDVYCPGCGGWLEILGCGMV--HPNVL----EAVGIDPEEYSGF------------AFGLGLERLAMLKYGIPDIRDL 325 (335)
T ss_pred EEEEEEcCCCCEEEEeccccc--CHHHH----HhcCCCCCcceEE------------EEeecHHHHHHHHhCCcHHHHH
Confidence 4666665 27899999975 45654 5688877765543 7999999999999999999974
No 52
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.35 E-value=4.7e-11 Score=121.24 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=63.1
Q ss_pred CeeEeecchhhhhcHHHHHHHHHHcC-CCCCCcHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 487 KVGELIGGSQREERYDVIKSRIEDMG-LPLEPYEWYLDLRRFG-TVKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 487 ~~~El~~G~~r~~~~~~l~~~~~~~g-~~~~~~~~yl~a~~~G-~PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
...||.++++|. +++.+.++++..| .+...+.||++ +..| +|+|+|+|||+|||+|+|||..+|.+|+.
T Consensus 264 ~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 264 DVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred ceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 468999999999 9999999999999 67788999999 6667 99999999999999999999999999874
No 53
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.34 E-value=3.6e-11 Score=121.87 Aligned_cols=220 Identities=19% Similarity=0.121 Sum_probs=130.3
Q ss_pred eecchhhhHHHHhh--cC---CcEEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcC
Q 008405 306 LTVSGQLQVETYAC--AV---SNVYTFGPTFRA-EHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHC 379 (567)
Q Consensus 306 L~~S~ql~le~~~~--~~---~rVFeI~~~FR~-E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~ 379 (567)
.++|---++-+.+. +| +.+|+=..+.|. |+. +..|.-==-|-|||.....-+-.++...+.++.++..+...-
T Consensus 72 iVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te 150 (327)
T PRK05425 72 VVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATE 150 (327)
T ss_pred EEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 44444444444332 34 468887777776 565 688976666777877654333344444555555554443210
Q ss_pred cccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccch-hHHhhhccccccCcEEEe
Q 008405 380 FDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLAS-EHERYLTEVKFQKPVIVY 458 (567)
Q Consensus 380 ~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~-~~e~~L~e~~~~~p~fI~ 458 (567)
.++...++. + ..+. +.|+|-.+-+++..- + +++. +-|..++.. ..-+||+
T Consensus 151 ----~~~~~~y~~-----~-~~Lp---~~i~FitsqeL~~~Y----------P----~l~~keRE~~i~ke--~gaVFi~ 201 (327)
T PRK05425 151 ----KAVSKKYPL-----L-PFLP---EEITFITSQELEDRY----------P----DLTPKEREDAIAKE--YGAVFLI 201 (327)
T ss_pred ----HHHHHhCcc-----c-ccCC---CceEEecHHHHHHHC----------C----CCCHHHHHHHHHHH--hCcEEEE
Confidence 111111110 0 0111 234443333222110 0 2222 234444432 4667776
Q ss_pred cCCCCCccc---cccccCCcceEEEEEeee-----CCeeEeecchhhhhcHHHHHHHHHHcC-CCCCCcHHHHHHhhcC-
Q 008405 459 NYPKGIKAF---YMRLNDDLKTVAAMDVLV-----PKVGELIGGSQREERYDVIKSRIEDMG-LPLEPYEWYLDLRRFG- 528 (567)
Q Consensus 459 ~yP~~~~pf---~~~~~~d~~~~~~fDL~~-----~~~~El~~G~~r~~~~~~l~~~~~~~g-~~~~~~~~yl~a~~~G- 528 (567)
.-=..++.= -.+.++-+.+..+=|+++ ....||.+|++|.+ ++.+.++++..| .+...+.||+++ ..|
T Consensus 202 ~IG~~L~~g~~Hd~RapDYDDW~LNGDilvw~~~l~~a~ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~ 279 (327)
T PRK05425 202 GIGGKLSDGKPHDGRAPDYDDWGLNGDILVWNPVLDDAFELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGE 279 (327)
T ss_pred eccCcCCCCCcCCCCCCCCcCcccCceEEEEccccCceeeecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCC
Confidence 544333221 111122234555556665 24589999999998 999999999999 577889999999 667
Q ss_pred CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 529 TVKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 529 ~PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
+|||+|+|||+|||+|+|||..+|.+|.+
T Consensus 280 LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 280 LPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred CCCcccccccHHHHHHHHhccchhccccc
Confidence 99999999999999999999999999985
No 54
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.32 E-value=1.6e-11 Score=127.60 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=41.6
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l~~ 373 (567)
|||++|+|||++.. +.+|.|+|+|+|.-... .++.++...++.+++.++.
T Consensus 187 rif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 187 RIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred EEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999987 58999999999976555 4688888877777777653
No 55
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.29 E-value=1.2e-11 Score=124.41 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=41.3
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFMC 372 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li~~l~ 372 (567)
-|+|+||+|||+|.. +.+|+|||+|+|.-.... ++.++...++.+++.++
T Consensus 103 ~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 103 IKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp EEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred eEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 599999999999998 589999999999877664 57788777777777665
No 56
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.22 E-value=2.5e-11 Score=118.00 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=42.3
Q ss_pred CccceeecchhhhHHHHhh-----cCCcEEEEecccccCCCCCC--CCccccccceeeeccCC
Q 008405 301 ARQAFLTVSGQLQVETYAC-----AVSNVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 301 ~~~~~L~~S~ql~le~~~~-----~~~rVFeI~~~FR~E~~~t~--rHlpEFtmLE~e~a~~d 356 (567)
+...+|..|....+-.++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+
T Consensus 50 ~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 50 EEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred CCEEEECCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 3456788888877766433 23599999999999875 33 78899999999998764
No 57
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.20 E-value=1.5e-10 Score=125.14 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=36.0
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~ 370 (567)
|+|.||+|||+|.. +.+|+|||.|+|.-... .++.+++.++..+++.
T Consensus 344 k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~ 392 (492)
T PLN02853 344 RYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSR 392 (492)
T ss_pred EEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999998 58999999999976553 3566666555444433
No 58
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.15 E-value=1.7e-10 Score=125.35 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=30.2
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
-|+|.||+|||+|.. +.+|+|||+|+|......+
T Consensus 358 ~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 358 KKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred ceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCC
Confidence 399999999999998 5899999999999877654
No 59
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.13 E-value=2.2e-09 Score=108.79 Aligned_cols=221 Identities=17% Similarity=0.148 Sum_probs=124.4
Q ss_pred eecchhhhHHHHhh--cC---CcEEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcC
Q 008405 306 LTVSGQLQVETYAC--AV---SNVYTFGPTFRA-EHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHC 379 (567)
Q Consensus 306 L~~S~ql~le~~~~--~~---~rVFeI~~~FR~-E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~ 379 (567)
.++|---++-+.+. +| +.+|+=.++-|. |+.-+..|.-==-|-|||.....-+-.++.+.+.++.+...+...-
T Consensus 69 vVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te 148 (330)
T TIGR00669 69 VVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATE 148 (330)
T ss_pred EehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 44554444444332 34 478887777886 5623578875566777777654333334444444444444433210
Q ss_pred cccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccch-hHHhhhccccccCcEEEe
Q 008405 380 FDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLAS-EHERYLTEVKFQKPVIVY 458 (567)
Q Consensus 380 ~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~-~~e~~L~e~~~~~p~fI~ 458 (567)
.++...++ +...+. +.|+|-.+-+++..-. +|+. +-|..++.. ..-+||+
T Consensus 149 ----~~~~~~y~------l~~~Lp---~~I~FitsqeL~~~YP--------------~lt~keRE~~i~ke--~gaVFi~ 199 (330)
T TIGR00669 149 ----AAVSERFG------LAPFLP---DQIHFVHSEELVSRYP--------------DLDSKGRERAICKE--LGAVFLI 199 (330)
T ss_pred ----HHHHHhcC------ccccCC---CceEEecHHHHHHHCC--------------CCCHHHHHHHHHHH--hCcEEEE
Confidence 01111110 111121 2344433333221100 2222 234444432 3556665
Q ss_pred cCCCCCccc---cccccCCcceE---------EEEEeee-----CCeeEeecchhhhhcHHHHHHHHHHcC-CCCCCcHH
Q 008405 459 NYPKGIKAF---YMRLNDDLKTV---------AAMDVLV-----PKVGELIGGSQREERYDVIKSRIEDMG-LPLEPYEW 520 (567)
Q Consensus 459 ~yP~~~~pf---~~~~~~d~~~~---------~~fDL~~-----~~~~El~~G~~r~~~~~~l~~~~~~~g-~~~~~~~~ 520 (567)
.-=..++.= -.+.++-+.+. .+=|+++ ..-.||.+-+.|- +.+.+.++++..| .+...+.|
T Consensus 200 ~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~ 278 (330)
T TIGR00669 200 GIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAFELSSMGIRV-DEDALRHQLALTGDEDRLELEW 278 (330)
T ss_pred eccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCceeeeecceeEE-CHHHHHHHHHHcCCCccccCHH
Confidence 543322211 01111111222 3456665 2457999999885 6778888899998 67788999
Q ss_pred HHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 521 YLDLRRFG-TVKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 521 yl~a~~~G-~PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
|+++ ..| +|+|+|+|||+|||+|+|||..+|.+|..
T Consensus 279 h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 279 HQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred HHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 9999 667 99999999999999999999999999975
No 60
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.83 E-value=6.3e-08 Score=107.10 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=34.1
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYV 368 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li 368 (567)
|+|+||+|||+|.. +..|++||+|++....+. ++.+++.++++++
T Consensus 352 rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll 398 (489)
T PRK04172 352 KYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDLLGILKEFY 398 (489)
T ss_pred EEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999987 467899999999988864 3444444444333
No 61
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.82 E-value=8e-08 Score=102.44 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=31.5
Q ss_pred HhhcCCcEEEEecccccCCCCCCCCccccccceeeecc
Q 008405 317 YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF 354 (567)
Q Consensus 317 ~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~ 354 (567)
+..+-.|++.+|+|||++.. +.+|.|+|.|+|.-+.+
T Consensus 143 l~~~~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 143 LRAGHTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred HHhCCCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 33456799999999999998 58999999999987665
No 62
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.81 E-value=1.9e-08 Score=81.73 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=60.3
Q ss_pred EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeC-CccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEE
Q 008405 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDK-DVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVD 128 (567)
Q Consensus 50 V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~-~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~v 128 (567)
|+|+|||.+++..++ +++|+.|+|++| .||+++.. ....+...++.|++|.|.|++...+. ++++|.++++++
T Consensus 1 V~v~G~V~~~~~~~~-~~~~~~l~D~tg--~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~---~~~~l~~~~i~~ 74 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGG-KIVFFTLEDGTG--SIQVVFFNEEYERFREKLKEGDIVRVRGKVKRYNG---GELELIVPKIEI 74 (75)
T ss_dssp EEEEEEEEEEEEEET-TEEEEEEEETTE--EEEEEEETHHHHHHHHTS-TTSEEEEEEEEEEETT---SSEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCC-CEEEEEEEECCc--cEEEEEccHHhhHHhhcCCCCeEEEEEEEEEEECC---ccEEEEECEEEE
Confidence 789999999944444 699999999985 59999998 22335667999999999999998873 359999999987
Q ss_pred e
Q 008405 129 V 129 (567)
Q Consensus 129 l 129 (567)
|
T Consensus 75 l 75 (75)
T PF01336_consen 75 L 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
No 63
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.76 E-value=8.5e-07 Score=90.23 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 167 RIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 167 r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
+.|..|.+.+++.|.++||.||.||+|...
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~ 32 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYT 32 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeH
Confidence 678999999999999999999999999775
No 64
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.75 E-value=2.4e-07 Score=96.01 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=34.0
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYV 368 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li 368 (567)
-|+||||+|||++.. +.+|+|||++|+.-+.. .|+.++...+|.++
T Consensus 151 irlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 151 IRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred ceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 399999999999875 46899999999986543 24555555554444
No 65
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.63 E-value=1.4e-07 Score=100.71 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=41.1
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li~~l 371 (567)
-|+|+||+|||+|...+.+|+++|.|+|.=.+.. ++.+++.+++.|++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3999999999999643579999999999877654 5888888877777765
No 66
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.39 E-value=3.6e-06 Score=90.74 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=42.3
Q ss_pred EEEEEeeeCC-eeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008405 478 VAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRD 554 (567)
Q Consensus 478 ~~~fDL~~~~-~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrd 554 (567)
....|+.++| +.||+|+++- +.+. ++..|++++.|-.| -||||+|||.|++.|+++||.
T Consensus 278 s~evdi~~~g~WiEi~gcG~v--~p~v----l~~~g~~~~~~~g~------------AfGiGleRlaMl~~gi~DiR~ 337 (460)
T TIGR00469 278 SWEIEIWFKDEWLELCGCGII--RHDI----LLRAGVHPSETIGW------------AFGLGLDRIAMLLFDIPDIRL 337 (460)
T ss_pred ceEEEEEECCeeEEEeeeccC--cHHH----HHHcCCCccceEEE------------EEEecHHHHHHHHcCccHHHH
Confidence 3457777844 4599999975 3333 45577775543221 589999999999999999985
No 67
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.06 E-value=1.9e-05 Score=78.41 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=42.7
Q ss_pred CCcEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 008405 321 VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (567)
Q Consensus 321 ~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li~~l 371 (567)
--|+||||+|||+++. +..|+|||+||++..++. |+.+++..+|.+++.+
T Consensus 80 ~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 80 PIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred CeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4599999999999875 457899999999999987 8999998888888643
No 68
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.01 E-value=1.4e-05 Score=76.21 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=37.5
Q ss_pred cEEEEecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 323 rVFeI~~~FR~E~~--~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~ 373 (567)
++|+||+|||+|.. .+-..+-||+|.|++....+ ++..+..+.++..+..
T Consensus 85 ~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 85 KLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp EEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred EEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHH
Confidence 89999999999932 23557779999999998777 7777766666655443
No 69
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.74 E-value=6.4e-05 Score=76.67 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=37.9
Q ss_pred cEEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHT--SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t--~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l 371 (567)
|+|+|++|||+|...+ --=.-||+|.|.|..+.+.++..+..++++...
T Consensus 121 r~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 121 KINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred HHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 7899999999998632 012349999999999999888888777776543
No 70
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.60 E-value=0.00049 Score=70.31 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=35.5
Q ss_pred cEEEEecccccCCCCCCC---CccccccceeeeccCCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSR---HLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~r---HlpEFtmLE~e~a~~d~~~lm~~~E~li~~ 370 (567)
|+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..+.++..
T Consensus 121 rl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~ 170 (264)
T cd00772 121 HLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSA 170 (264)
T ss_pred eEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHH
Confidence 89999999999943 211 134999999998768888877777666643
No 71
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.58 E-value=0.00031 Score=69.84 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 167 RIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 167 r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
+++.+|.+.+++.+.+.||.||.||.|...
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~ 32 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPT 32 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCH
Confidence 678899999999999999999999999865
No 72
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.55 E-value=0.0003 Score=75.89 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+.+..+...+++.|.++||.||.||+|...
T Consensus 13 ~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~ 44 (397)
T TIGR00442 13 EMIKWQYIEETIREVFELYGFKEIRTPIFEYT 44 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCcccchH
Confidence 45789999999999999999999999999653
No 73
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.51 E-value=0.00028 Score=71.66 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
.+++.+|.+.+++.+.+.||.||.||+|..
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~ 60 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQP 60 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCC
Confidence 478999999999999999999999999976
No 74
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.46 E-value=0.00089 Score=75.58 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++.+|.+.+|+.|.+.||.||.||.|...
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~ 77 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPA 77 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchH
Confidence 45889999999999999999999999999873
No 75
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00062 Score=73.81 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+.+..+...+|+.|.+.||.||+||+|...
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~ 48 (412)
T PRK00037 17 ESAKWQYVEDTIREVFERYGFSEIRTPIFEYT 48 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccccchH
Confidence 34788899999999999999999999999553
No 76
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00098 Score=75.38 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-++++.+|.+.+|+.|.+.||.||.||+|...
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~ 77 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPA 77 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcH
Confidence 45889999999999999999999999999743
No 77
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00061 Score=74.30 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQ-KQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~-~~gF~EVeTPiL~~~ 196 (567)
...++..++++.+++.+. +.||.||.||.|...
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~ 201 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNE 201 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccH
Confidence 355899999999999998 999999999999874
No 78
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.32 E-value=0.00093 Score=72.71 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
...++..++++.+++.+.+.||.||.||.|...
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~ 203 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNE 203 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 456889999999999999999999999999875
No 79
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.29 E-value=0.00085 Score=69.79 Aligned_cols=31 Identities=35% Similarity=0.484 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+++.+|.+.+++.+.+.||.||.||.|...
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~ 60 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNK 60 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCH
Confidence 4788999999999999999999999999764
No 80
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.29 E-value=0.00036 Score=70.85 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcCC--cEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQG--FLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~g--F~EVeTPiL~~~ 196 (567)
.+++..|.+.+|+.+...| |.||+||+|.+.
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~ 64 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE 64 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH
Confidence 4889999999999998885 999999999886
No 81
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.12 E-value=0.0018 Score=67.32 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
..+++.+|.+.+++.+.+.||.||.||.|...
T Consensus 51 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~ 82 (297)
T cd00770 51 GALLERALINFALDFLTKRGFTPVIPPFLVRK 82 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECcccccH
Confidence 45899999999999999999999999999875
No 82
>PLN02908 threonyl-tRNA synthetase
Probab=97.10 E-value=0.0021 Score=74.31 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=38.4
Q ss_pred cEEEEecccccCCCC---CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSH---TSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 323 rVFeI~~~FR~E~~~---t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~ 373 (567)
|+|++|+|||+|.+- +-.=.-||+|.|.+. |+..+++.+.+++++..+..
T Consensus 404 r~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~ 456 (686)
T PLN02908 404 RLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDY 456 (686)
T ss_pred hHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 899999999999762 211234899999998 88878888888777766554
No 83
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0025 Score=69.24 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=36.5
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD----LKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d----~~~lm~~~E~li~~l 371 (567)
|-|.+|||||.|.....|-- ||+|+++|..+.+ --+++.++-++++.+
T Consensus 103 k~yy~g~vfRyErPQ~GR~R-qF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 103 KLYYFGPVFRYERPQKGRYR-QFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred eEEEecceecCCCCCCCCce-eeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 88999999999999877775 9999999988754 234555555555443
No 84
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=96.99 E-value=0.0017 Score=72.01 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=37.1
Q ss_pred cEEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSDLKDDMNCAEAYVK 369 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~--rHlpEFtmLE~e~a~~d~~~lm~~~E~li~ 369 (567)
|+||+++|||+|.. ++ -=.-||+|.|.+..+.+.++..+..+.++.
T Consensus 133 rl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 133 LYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred HHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 88999999999986 33 134599999999999998888777776654
No 85
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=96.99 E-value=0.0051 Score=69.72 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+|+.+.+.||.||.||+|...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~ 236 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 345889999999999999999999999999764
No 86
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=96.97 E-value=0.0013 Score=72.77 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=37.1
Q ss_pred cEEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~--rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~ 370 (567)
|+||+++|||+|...+. -=.-||+|-|.+..|.+.++..+..+.++..
T Consensus 127 r~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~ 176 (472)
T TIGR00408 127 KINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDI 176 (472)
T ss_pred HHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHH
Confidence 88999999999986310 1235999999998899988887776666543
No 87
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.94 E-value=0.01 Score=48.53 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=56.7
Q ss_pred EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEE
Q 008405 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 50 V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
++|.|-|.++|..++ +++|+.|.|.++ .+.+++-++.. .+...+..|+.|.|.|.+..... .+++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~-g~~~~~L~D~~~--~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~--~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSS-GHLYFTLKDEDA--SIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEP--RGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCC-cEEEEEEEeCCe--EEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECC--CCEEEEEEEEEE
Confidence 679999999987444 499999999985 49999887642 24457899999999999986431 246888888764
No 88
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=96.91 E-value=0.0041 Score=68.19 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+++.+|.+.+|+.+.+.||.||.||.|.+.
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~ 77 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPA 77 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 5889999999999999999999999999864
No 89
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=96.90 E-value=0.0062 Score=68.87 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+|+.+.+.||.||.||+|...
T Consensus 198 ~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~ 230 (563)
T TIGR00418 198 KGATIRNLLEDFVRQKQIKYGYMEVETPIMYDL 230 (563)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 345789999999999999999999999999754
No 90
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.90 E-value=0.0037 Score=67.55 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
-.+.|..+.+.+++.|.+.||.||+||+|..
T Consensus 16 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~ 46 (391)
T PRK12292 16 EARKIEEIRRRLLDLFRRWGYEEVITPTLEY 46 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceeeCcchhh
Confidence 4578999999999999999999999999954
No 91
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.89 E-value=0.0059 Score=62.99 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+.+..|.+.+++.|...||-||+||++-..
T Consensus 18 e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~ 49 (281)
T PRK12293 18 SAKLKREIENVASEILYENGFEEIVTPFFSYH 49 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccceeeh
Confidence 34788899999999999999999999999653
No 92
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.00086 Score=69.58 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=39.6
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKF 370 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~ 370 (567)
.|+|.|-+|||||-. +.+|+.||.|+|--.+. .++-++|-+.++++..
T Consensus 334 ~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 334 AKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred ccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 489999999999999 48999999999977664 4578888777666544
No 93
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.84 E-value=0.0024 Score=71.63 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=38.0
Q ss_pred cEEEEecccccCCCCCC---CCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTS---RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~---rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~ 374 (567)
|.||+|+|||+|.+... .=.-||||.|... |++.+++.+.+.+++..+...
T Consensus 251 R~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~v 304 (545)
T PRK14799 251 RFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEV 304 (545)
T ss_pred hhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 89999999999987320 1235999999998 888777767776666655543
No 94
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=96.80 E-value=0.0071 Score=66.14 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+.|..|.+.+|+.|...||.||+||++-..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~ 48 (430)
T CHL00201 17 EINYWQFIHDKALTLLSLANYSEIRTPIFENS 48 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCcccchH
Confidence 34779999999999999999999999999763
No 95
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=96.76 E-value=0.046 Score=54.55 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=51.9
Q ss_pred eeEeecchhhhhcHHHHHHHHHHcCCC-CCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 488 VGELIGGSQREERYDVIKSRIEDMGLP-LEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 488 ~~El~~G~~r~~~~~~l~~~~~~~g~~-~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
..|+.+-+.|. +.+.+.+...-.|.. -...+|-=..+.--+|.+-|-|||=-||+|+|+....|-+|..
T Consensus 246 afElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 246 AFELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred hheeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 46888888874 556666666655533 2345666566666688899999999999999999999999863
No 96
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=96.76 E-value=0.0079 Score=69.03 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+++.+...||.||.||+|...
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~ 300 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDR 300 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCH
Confidence 446889999999999999999999999999654
No 97
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=96.70 E-value=0.0036 Score=65.52 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.++|..|...+++.|.++||.||+||+|...
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~ 38 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYL 38 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhH
Confidence 35789999999999999999999999998763
No 98
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.70 E-value=0.026 Score=48.05 Aligned_cols=75 Identities=24% Similarity=0.215 Sum_probs=58.2
Q ss_pred EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc----cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 50 V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~----~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
|++-|+|.++...++ .+. +.|.|+||. |-+.+....+. -...+..|+.|.|.|.+..-. +...|.+.+
T Consensus 2 v~~vG~V~~~~~~~~-~~~-~tL~D~TG~--I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~----g~~ql~i~~ 73 (95)
T cd04478 2 VTLVGVVRNVEEQST-NIT-YTIDDGTGT--IEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQ----GKKSIMAFS 73 (95)
T ss_pred EEEEEEEEeeeEccc-EEE-EEEECCCCc--EEEEEeCCCCCcccccccccccCCEEEEEEEEcccC----CeeEEEEEE
Confidence 789999999998884 344 589999975 99988765432 245689999999999997655 467888888
Q ss_pred EEEecCC
Q 008405 126 VVDVGMV 132 (567)
Q Consensus 126 i~vls~~ 132 (567)
+..+...
T Consensus 74 i~~v~d~ 80 (95)
T cd04478 74 IRPVTDF 80 (95)
T ss_pred EEEeCCc
Confidence 8877643
No 99
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=96.70 E-value=0.0092 Score=68.55 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=35.1
Q ss_pred cEEEEecccccCCCCC--C-CCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHT--S-RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMC 372 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t--~-rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~ 372 (567)
|.|++|+|||.|.+.. . -=.-||+|.|.+ .|++-++.....++++..+.
T Consensus 357 r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 357 RMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQID 408 (639)
T ss_pred eeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHH
Confidence 9999999999997521 1 012489999999 68887776666555555433
No 100
>PLN02837 threonine-tRNA ligase
Probab=96.67 E-value=0.004 Score=71.06 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=37.5
Q ss_pred cEEEEecccccCCCCCCC----CccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSR----HLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~r----HlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~ 373 (567)
|++|+|+|||+|.+ +.+ =.-||+|.|.+. |...++..+..+.++...-.
T Consensus 331 r~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 331 RVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred hhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 88999999999975 221 234899999996 98888887777777765443
No 101
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.53 E-value=0.0051 Score=67.76 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=38.0
Q ss_pred CC-cEEEEecccccCCCCCCCCc----cccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 008405 321 VS-NVYTFGPTFRAEHSHTSRHL----AEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 321 ~~-rVFeI~~~FR~E~~~t~rHl----pEFtmLE~e~a~~d~~~lm~~~E~li~~l~~ 373 (567)
++ |+.|+|+|||+|-+ + +|- -||||.|.+ .|.+-++..+.+..++..+..
T Consensus 185 LPlr~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 185 LPFGIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred CCeeeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 44 89999999999976 4 443 799999997 688877776666666655444
No 102
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.52 E-value=0.0096 Score=61.97 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+.+..+.+.+++.|..+||.||+||+|...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~ 40 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYY 40 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeec
Confidence 345788999999999999999999999999654
No 103
>PLN02530 histidine-tRNA ligase
Probab=96.48 E-value=0.013 Score=65.08 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
-.+.|..|.+.+++.|...||.||+||+|-.
T Consensus 83 ~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~ 113 (487)
T PLN02530 83 DMRLRNWLFDHFREVSRLFGFEEVDAPVLES 113 (487)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccch
Confidence 3578999999999999999999999999965
No 104
>PLN02972 Histidyl-tRNA synthetase
Probab=96.47 E-value=0.013 Score=67.68 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 163 ~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
-.-.+.|..|...+++.|..+||.||+||++-.
T Consensus 338 P~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~ 370 (763)
T PLN02972 338 KEQMAIREKAFSIITSVFKRHGATALDTPVFEL 370 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEccCCcccc
Confidence 345688999999999999999999999999954
No 105
>PLN02678 seryl-tRNA synthetase
Probab=96.44 E-value=0.0049 Score=67.43 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
..+++.++++.+++++.++||+||.||.|...
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~ 204 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTPFFMRK 204 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccccH
Confidence 46899999999999999999999999999764
No 106
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.40 E-value=0.029 Score=48.71 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc-cc-cCCCCCcEEEEEeEEeCCCCCCcceeEEEEe
Q 008405 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LG-QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQ 124 (567)
Q Consensus 47 g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~-~~-~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~ 124 (567)
-..|+|.|=|.+.+.+++ +-+|++|.|+. ..|++++-..... .. ..++.|+-|.|.|.+.--+. .|.+.+.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~-gh~YftLkD~~--a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~--~G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSS-GHVYFTLKDEE--ASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEP--RGSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCC-ceEEEEEEcCC--cEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECC--CcEEEEEEE
Confidence 478999999999999544 48999999976 5699999865532 33 46899999999999877663 367999998
Q ss_pred EEE
Q 008405 125 KVV 127 (567)
Q Consensus 125 ~i~ 127 (567)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
No 107
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=96.35 E-value=0.014 Score=66.49 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=39.7
Q ss_pred cEEEEec-ccccCCCC---CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGP-TFRAEHSH---TSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (567)
Q Consensus 323 rVFeI~~-~FR~E~~~---t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~ 374 (567)
|+||+|+ |||+|.+- +-.=.-||||.|.+.-..+.++.++..++++..+..-
T Consensus 310 r~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i 365 (613)
T PRK03991 310 KMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILET 365 (613)
T ss_pred hhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 8899999 99999751 1113458999999986666888888888877766553
No 108
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.35 E-value=0.035 Score=45.46 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=55.3
Q ss_pred EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEE
Q 008405 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVD 128 (567)
Q Consensus 50 V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~v 128 (567)
|+|.|=|.+.+..| +=+|+.|+|+.+ .|.+++-+... .....+..||-|.|.|.+.. + .|.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~--GHvyfsLkD~~a--~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~-~---~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTS--GPTIFTLRDETG--TVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEP-R---DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCC--CCEEEEEEcCCE--EEEEEEEchhccCCcCCCCCCCEEEEEEEEec-C---CeEEEEEEeeEEE
Confidence 57899998765444 368999999764 59998875432 23446899999999999875 4 3689999999987
Q ss_pred e
Q 008405 129 V 129 (567)
Q Consensus 129 l 129 (567)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 109
>PLN02320 seryl-tRNA synthetase
Probab=96.28 E-value=0.016 Score=64.06 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=36.6
Q ss_pred cEEEEecccccCCCC-C-------CCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSH-T-------SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 323 rVFeI~~~FR~E~~~-t-------~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~ 373 (567)
|++++++|||.|-+. + +-| +|++.|... |..-++..+..++|+..+..
T Consensus 315 Ry~~~s~cFR~EAgs~G~d~rGL~Rvh--QF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 315 KYVAFSHCFRTEAGAAGAATRGLYRVH--QFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred eeEEeccccccccccCCCcCCCceeee--eeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 899999999999551 1 225 799999864 67778888888877776544
No 110
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.24 E-value=0.056 Score=46.30 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=51.0
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc---------------------ccccCCCCCcEEEEEeEEeC
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---------------------DLGQLVPTGTCVYVEGMLKN 110 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~---------------------~~~~~l~~gs~V~V~G~v~~ 110 (567)
|-|+|.+++.... ..-+.|.|++|. |-+++..... .....+..|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~--~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERET--FYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCC--eEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec
Confidence 6799999998883 455688999974 9999875432 12345899999999999976
Q ss_pred CCCCCcceeEEEEeEEE
Q 008405 111 PPEGTKQKIELRVQKVV 127 (567)
Q Consensus 111 ~~~~~~~~lEl~~~~i~ 127 (567)
=. +...|.++.+.
T Consensus 78 fr----g~~ql~i~~~~ 90 (92)
T cd04483 78 YR----GEREINASVVY 90 (92)
T ss_pred cC----CeeEEEEEEEE
Confidence 65 35667776654
No 111
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.04 E-value=0.03 Score=61.07 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+++.|...||.||.||+|...
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~ 48 (423)
T PRK12420 17 EQVLRNKIKRALEDVFERYGCKPLETPTLNMY 48 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchH
Confidence 34778899999999999999999999999763
No 112
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.015 Score=64.04 Aligned_cols=93 Identities=14% Similarity=0.211 Sum_probs=67.0
Q ss_pred ccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcE
Q 008405 23 RHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTC 101 (567)
Q Consensus 23 ~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~ 101 (567)
....-.|+.|.+|- +++|++|+|.|-|..++.-+ +-+-+.|+|++|. +++..-.... .--..+.+|++
T Consensus 196 ~~ke~~r~~i~~id-------~~ig~tV~I~GeV~qikqT~--GPTVFtltDetg~--i~aAAFe~aGvRAyP~IevGdi 264 (715)
T COG1107 196 VEKELPRTLIDDLD-------EMIGKTVRIEGEVTQIKQTS--GPTVFTLTDETGA--IWAAAFEEAGVRAYPEIEVGDI 264 (715)
T ss_pred hhhhcccccHHHHH-------hhcCceEEEEEEEEEEEEcC--CCEEEEEecCCCc--eehhhhccCCcccCCCCCCCce
Confidence 34455578888775 48999999999999999888 5666799999976 7766432211 01135899999
Q ss_pred EEEEeEEeCCCCCCcceeEEEEeEEEEec
Q 008405 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVG 130 (567)
Q Consensus 102 V~V~G~v~~~~~~~~~~lEl~~~~i~vls 130 (567)
|.|.|.|.... |.+-|.+.+++.|.
T Consensus 265 V~ViG~V~~r~----g~lQiE~~~me~L~ 289 (715)
T COG1107 265 VEVIGEVTRRD----GRLQIEIEAMEKLT 289 (715)
T ss_pred EEEEEEEeecC----CcEEEeehhhHHhh
Confidence 99999998776 35556566665543
No 113
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.01 E-value=0.037 Score=59.84 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+.+..|.+.+++.|...||.||+||++-..
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~ 51 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYL 51 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhH
Confidence 45788999999999999999999999999643
No 114
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.75 E-value=0.13 Score=42.03 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=52.2
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecC
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~ 131 (567)
|.+.-....+.|+ .++++.|.|++|. +.+++-++.......+..|.+|.|.|.+.... +..++.+.++..+..
T Consensus 6 v~~~~~~~tk~g~-~~~~~~l~D~tg~--i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~~----~~~~l~~~~i~~l~~ 78 (83)
T cd04492 6 IKSKELRTAKNGK-PYLALTLQDKTGE--IEAKLWDASEEDEEKFKPGDIVHVKGRVEEYR----GRLQLKIQRIRLVTE 78 (83)
T ss_pred EEEeeeecccCCC-cEEEEEEEcCCCe--EEEEEcCCChhhHhhCCCCCEEEEEEEEEEeC----CceeEEEEEEEECCc
Confidence 3333333334454 4899999999975 99999765433345689999999999997633 468898888877654
No 115
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.58 E-value=0.047 Score=44.37 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=51.0
Q ss_pred EEEEEEeee----ecCCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEE
Q 008405 52 VGGWVKTGR----EQGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (567)
Q Consensus 52 v~GwV~~iR----~~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i 126 (567)
+.|.|.+++ +.|+ .++|+.|.|++|. +.+++-++. ..+...+..|..|.|.|++.... +.+++.++++
T Consensus 2 i~g~v~~~~~~~~k~g~-~~~~~~l~D~tg~--~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~~----~~~~l~~~~i 74 (84)
T cd04485 2 VAGLVTSVRRRRTKKGK-RMAFVTLEDLTGS--IEVVVFPETYEKYRDLLKEDALLLVEGKVERRD----GGLRLIAERI 74 (84)
T ss_pred EEEEEEEeEEEEcCCCC-EEEEEEEEeCCCe--EEEEECHHHHHHHHHHhcCCCEEEEEEEEEecC----CceEEEeecc
Confidence 456665432 2343 4899999999875 899887644 22345688999999999997643 4688888876
Q ss_pred EEec
Q 008405 127 VDVG 130 (567)
Q Consensus 127 ~vls 130 (567)
..+.
T Consensus 75 ~~~~ 78 (84)
T cd04485 75 EDLE 78 (84)
T ss_pred ccHH
Confidence 6553
No 116
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=95.56 E-value=0.09 Score=45.99 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccc-cCCCCCcEEEEE
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG-QLVPTGTCVYVE 105 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~-~~l~~gs~V~V~ 105 (567)
...+++++++. ...++.|+|.|.|.+.-. +. +.. .+|++| .|+|-++.+. |. ..++.++-|.+.
T Consensus 20 ~~~~TV~~a~~------~~Dd~~V~L~G~Iv~~l~-~d-~Y~---F~D~TG--~I~VeId~~~--w~g~~vt~~~~Vri~ 84 (103)
T PF04076_consen 20 ATVTTVAQAKN------AKDDTPVTLEGNIVKQLG-DD-KYL---FRDATG--EIEVEIDDDV--WRGQTVTPDDKVRIS 84 (103)
T ss_dssp -----HHHHTT------S-SSEEEEEEEEEEEEEE-TT-EEE---EEETTE--EEEEE--GGG--STT----TTSEEEEE
T ss_pred cCeEeHHHHhh------CcCCCeEEEEEEEEEEec-CC-EEE---EECCCC--cEEEEEChhh--cCCcccCCCCEEEEE
Confidence 44677888874 456889999999875433 32 344 499987 4999888775 33 458999999999
Q ss_pred eEEeCCCCCCcceeEEEEeEEE
Q 008405 106 GMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 106 G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
|.|.+.- ...||.|.+|+
T Consensus 85 GeVDk~~----~~~~IdV~~I~ 102 (103)
T PF04076_consen 85 GEVDKDW----NKTEIDVDRIE 102 (103)
T ss_dssp EEEEEET----TEEEEEEEEEE
T ss_pred EEEeCCC----CceEEEEEEEE
Confidence 9998554 36888888775
No 117
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=95.49 E-value=0.15 Score=46.13 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=59.4
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccc-cCCCCCcEEEEEe
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG-QLVPTGTCVYVEG 106 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~-~~l~~gs~V~V~G 106 (567)
.-+++++.++ -..+..|+|.|.|.+.-..- .-. .+|++|. |.|-++.+. |. ..++.+|-|.+.|
T Consensus 44 ~~~tV~~a~~------~~Ddt~V~L~G~Iv~~l~~d--~Y~---F~D~TG~--I~VeId~~~--w~G~~v~p~d~V~I~G 108 (126)
T TIGR00156 44 KKMTVDFAKS------MHDGASVTLRGNIISHIGDD--RYV---FRDKSGE--INVVIPAAV--WNGREVQPKDMVNISG 108 (126)
T ss_pred ceEeHHHHhh------CCCCCEEEEEEEEEEEeCCc--eEE---EECCCCC--EEEEECHHH--cCCCcCCCCCEEEEEE
Confidence 3677888774 35688999999997543322 344 4999975 999998765 43 3588999999999
Q ss_pred EEeCCCCCCcceeEEEEeEEE
Q 008405 107 MLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 107 ~v~~~~~~~~~~lEl~~~~i~ 127 (567)
.|-+.- +..||.|.+|+
T Consensus 109 eVDk~~----~~~~IdV~~I~ 125 (126)
T TIGR00156 109 SLDKKS----APAEVDVTHIQ 125 (126)
T ss_pred EECCCC----CCeEEEEEEEE
Confidence 998554 24688887775
No 118
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.25 E-value=0.19 Score=41.78 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=50.4
Q ss_pred EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc-c--ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEE
Q 008405 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-A--DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (567)
Q Consensus 50 V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~-~--~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i 126 (567)
|.++|-|.++|..++++- |+.|.|.+|. +.+++-++. . .+...+..+.+|.|+|.+.. . + + .+.+++|
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~-~-~---~-~l~~~~I 72 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKDKEELFEEAEDILPDEVIGVSGTVSK-D-G---G-LIFADEI 72 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCchhhhhhhhhhccCCCEEEEEEEEec-C-C---C-EEEEEEe
Confidence 678999998885554456 9999999975 999998765 3 34456889999999999955 2 1 3 6666643
No 119
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=95.13 E-value=0.2 Score=44.77 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=63.0
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEe
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G 106 (567)
...+++++-+. -+.+..|+|.|-|- |..|.... ..||++|. |+|.++.+..+ ...++..|-|.+.|
T Consensus 43 ~~~~TV~~Ak~------~~Dda~V~l~GnIv--~qi~~D~y---~FrD~sGe--I~VeIdd~~w~-g~tv~P~dkV~I~G 108 (128)
T COG3111 43 AKVTTVDQAKT------LHDDAWVSLEGNIV--RQIGDDRY---VFRDASGE--INVDIDDKVWN-GQTVTPKDKVRIQG 108 (128)
T ss_pred cceeEHHHhhc------cccCCeEEEEeeEE--EeeCCceE---EEEcCCcc--EEEEecccccC-CcccCcccEEEEEe
Confidence 55778877663 46688999999986 44443233 34999975 99999987621 34589999999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEe
Q 008405 107 MLKNPPEGTKQKIELRVQKVVDV 129 (567)
Q Consensus 107 ~v~~~~~~~~~~lEl~~~~i~vl 129 (567)
.|-+.- ...||.|..|+.+
T Consensus 109 evDk~~----~~~eIdV~~I~k~ 127 (128)
T COG3111 109 EVDKDW----NSVEIDVKHIEKL 127 (128)
T ss_pred EEcCCC----ccceeEhhheEec
Confidence 997764 2678888888765
No 120
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.10 E-value=0.23 Score=42.40 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=53.4
Q ss_pred EEEEEEEEeeeec-CCceeEEEEEecCCCCceeEEEEeCCc---cccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 50 VRVGGWVKTGREQ-GKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 50 V~v~GwV~~iR~~-gk~~l~FidLrD~~~~~~iQvv~~~~~---~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
++|.|.|.+.+.+ .+ .=+|+.|.|+++ .|.+++-+.. ......+..||-|.|.|.+..-. .|.+++
T Consensus 1 ~~v~GeVs~~~~~~~s-GH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~-------ql~ve~ 70 (91)
T cd04482 1 YRVTGKVVEEPRTIEG-GHVFFKISDGTG--EIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGT-------TLNLEK 70 (91)
T ss_pred CEEEEEEeCCeecCCC-CCEEEEEECCCc--EEEEEEECcccccccccCCCCCCCEEEEEEEEecCC-------EEEEEE
Confidence 3789999988653 22 368889999875 4999886543 12445789999999999984332 588999
Q ss_pred EEEecC
Q 008405 126 VVDVGM 131 (567)
Q Consensus 126 i~vls~ 131 (567)
+++++.
T Consensus 71 l~~~gl 76 (91)
T cd04482 71 LRVIRL 76 (91)
T ss_pred EEECCC
Confidence 988764
No 121
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.03 E-value=0.16 Score=39.63 Aligned_cols=68 Identities=24% Similarity=0.420 Sum_probs=50.4
Q ss_pred EEEEEEeeeecC--CceeEEEEEecCC-CCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEE
Q 008405 52 VGGWVKTGREQG--KGSFAFLEVNDGS-CPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (567)
Q Consensus 52 v~GwV~~iR~~g--k~~l~FidLrD~~-~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i 126 (567)
+.|.|.+++... + ..+++.|.|++ + .+.+++..+.. .+...+..|+.|.|.|.+.... +...+.+.++
T Consensus 2 v~g~v~~~~~~~~~~-~~~~~~l~D~~~~--~i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~~~~----~~~~l~~~~~ 73 (75)
T cd03524 2 IVGIVVAVEEIRTEG-KVLIFTLTDGTGG--TIRVTLFGELAEELENLLKEGQVVYIKGKVKKFR----GRLQLIVESI 73 (75)
T ss_pred eEEEEEeecccccCC-eEEEEEEEcCCCC--EEEEEEEchHHHHHHhhccCCCEEEEEEEEEecC----CeEEEEeeee
Confidence 678888886654 4 48999999998 5 49999886542 2335689999999999997643 4577777654
No 122
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.79 E-value=0.13 Score=55.22 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=32.4
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccC-C-H---HHHHHHHHHHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-D-L---KDDMNCAEAYVKF 370 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d-~---~~lm~~~E~li~~ 370 (567)
-|.|++|+|||.|.. ..-||+|+.+|.-+. + . -+++.++-+.++.
T Consensus 83 ~R~~Y~g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 83 ARYAYLGEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred eEEEEEccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 389999999999832 235999999999764 3 2 2566666655554
No 123
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=94.78 E-value=0.12 Score=49.64 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=57.8
Q ss_pred CCCCCEEEEEEEEEeee-ecCCceeEEEEEecCCCCceeEEEEeCCcccc------ccCCCCCcEEEEEeEEeCCCCCCc
Q 008405 44 GLAGRQVRVGGWVKTGR-EQGKGSFAFLEVNDGSCPANLQVIVDKDVADL------GQLVPTGTCVYVEGMLKNPPEGTK 116 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR-~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~------~~~l~~gs~V~V~G~v~~~~~~~~ 116 (567)
-.+.+.|+|.|-|.+.+ ..|. ++.|+.|.|++|. |-+++..+...+ ...+..|++|+|+|.+..-+
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~-gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yr---- 120 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGG-GIESLVLNDGTGT--ITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYR---- 120 (204)
T ss_pred ceeeccceeeeEEEeeeccccc-ceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeC----
Confidence 34677899999999987 5555 5999999999975 998887765432 12467999999999998777
Q ss_pred ceeEEEEeE
Q 008405 117 QKIELRVQK 125 (567)
Q Consensus 117 ~~lEl~~~~ 125 (567)
|..||.+.+
T Consensus 121 G~~eVkvnq 129 (204)
T COG4085 121 GSSEVKVNQ 129 (204)
T ss_pred CCceeeccC
Confidence 356777765
No 124
>PRK10053 hypothetical protein; Provisional
Probab=94.77 E-value=0.28 Score=44.69 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=59.0
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccc-cCCCCCcEEEEEeE
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG-QLVPTGTCVYVEGM 107 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~-~~l~~gs~V~V~G~ 107 (567)
.+++++.+. -..+..|+|.|.|.+ ..|...-.| +|++|. |+|-++.+. |. ..++.++-|.+.|.
T Consensus 49 ~~tV~~a~~------~~Dd~~V~L~G~Iv~--~lg~d~Y~F---~D~tG~--I~VeID~~~--w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 49 KMTVEQAKT------MHDGATVSLRGNLID--HKGDDRYVF---RDKSGE--INVIIPAAV--FDGREVQPDQMININGS 113 (130)
T ss_pred eEEHHHhhc------CcCCCeEEEEEEEEE--EeCCceEEE---ECCCCc--EEEEeCHHH--cCCCcCCCCCEEEEEEE
Confidence 457877663 456889999999963 334323444 999975 999998776 43 46899999999999
Q ss_pred EeCCCCCCcceeEEEEeEEE
Q 008405 108 LKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 108 v~~~~~~~~~~lEl~~~~i~ 127 (567)
|-+.- ...||.|++|+
T Consensus 114 vDk~~----~~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKS----APPVVRVTHLQ 129 (130)
T ss_pred ECCCC----CCeEEEEEEEe
Confidence 98664 25788888775
No 125
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=94.45 E-value=0.3 Score=49.73 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=54.0
Q ss_pred EEEEEEEEEeeeec----CCceeEEEEEecCCCCceeEEEEeCCcc-----ccccCCCCCcEEEEEeEEeCCCCCCccee
Q 008405 49 QVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (567)
Q Consensus 49 ~V~v~GwV~~iR~~----gk~~l~FidLrD~~~~~~iQvv~~~~~~-----~~~~~l~~gs~V~V~G~v~~~~~~~~~~l 119 (567)
.|+|.|.|..+... . +.+|+.|-|+||...|.+++..+.. .+ ..+ .|++|.|+|++. . +..
T Consensus 68 ~v~i~G~Vv~~~~~~~~~~--~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~-~~~-~G~~V~VkG~vs--r----~~~ 137 (256)
T PF10451_consen 68 WVRIVGVVVGIDYKWIENE--DRIILTIDDSSGANTIECKCSKSSYLSMGLPI-NDL-IGKVVEVKGTVS--R----NER 137 (256)
T ss_dssp EEEEEEEEEEEEEEE-BBT--CEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHC-TT--TT-EEEEEEEEE--S----SSE
T ss_pred EEEEEEEEEEEEEEeeccc--ceEEEEEeCCCCceeEEEEEEcccccccCCCc-cCC-CCcEEEEEEEEc--c----CcE
Confidence 59999999998765 5 5899999999983369999986531 12 234 999999999998 2 467
Q ss_pred EEEEeEEEEecC
Q 008405 120 ELRVQKVVDVGM 131 (567)
Q Consensus 120 El~~~~i~vls~ 131 (567)
+|.++.+.++..
T Consensus 138 ql~ve~i~~~~~ 149 (256)
T PF10451_consen 138 QLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEETS
T ss_pred EEEEEEEEccCC
Confidence 999999987753
No 126
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=94.35 E-value=0.17 Score=55.68 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCCEEEEEEEEEeeeec----CCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 46 AGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~----gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
.|+.|+|.|.|.++|.. |+ .++|+.|.|.+|. +.+++-++. ..+...|..+.+|.|+|++.... +.+.
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~-~maf~~leD~tG~--ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~----~~~~ 351 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGD-PMAFLQLEDLSGQ--SEAVVFPKSYERISELLQVDARLIIWGKVDRRD----DQVQ 351 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCC-EEEEEEEEECCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEE
Confidence 57899999999998754 44 4999999999975 999997664 22445688999999999997542 3577
Q ss_pred EEEeEEEEe
Q 008405 121 LRVQKVVDV 129 (567)
Q Consensus 121 l~~~~i~vl 129 (567)
+.++++.-+
T Consensus 352 liv~~i~~l 360 (449)
T PRK07373 352 LIVEDAEPI 360 (449)
T ss_pred EEEeEeecH
Confidence 888777544
No 127
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.13 Score=55.71 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-++--++++.+=++..++||+||.+|.|...
T Consensus 174 a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~ 204 (429)
T COG0172 174 ARLERALIQFMLDLHTKHGFTEVLPPYLVNL 204 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCceEeeCceeecH
Confidence 3566677888888888999999999999875
No 128
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=93.65 E-value=0.49 Score=45.99 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=63.2
Q ss_pred cceeehhhccC----CCCCCCCCCC---EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc---ccccCCC
Q 008405 28 DRVLIKSILTR----PDGGAGLAGR---QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVP 97 (567)
Q Consensus 28 ~r~~i~~i~~~----~~~~~~~~g~---~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~---~~~~~l~ 97 (567)
+-++||+|+.| .+..-...+. .|..-|||.+|..+-. -+|+.|.||+|. |-|-...... ...+.+.
T Consensus 40 rpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~tt--n~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d~~ 115 (258)
T COG5235 40 RPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTT--NSMFVIEDGTGS--IEVRFWPGNSYEEEQCKDLE 115 (258)
T ss_pred eeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeeccc--ceEEEEecCCce--EEEEecCCCchHHHhccccc
Confidence 35789999986 1111011122 3789999999999995 488899999975 7777765432 1234566
Q ss_pred CCcEEEEEeEEeCCCCCCcceeEEEEeEEEEe
Q 008405 98 TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDV 129 (567)
Q Consensus 98 ~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vl 129 (567)
.+-.|.|-|-++.=. |+..|....|.-+
T Consensus 116 ~~~yvkV~G~lk~F~----GK~~I~~~~i~~I 143 (258)
T COG5235 116 EQNYVKVNGSLKTFN----GKRSISASHISAI 143 (258)
T ss_pred cccEEEEecceeeeC----CeeEEehhheeec
Confidence 777999999987655 4666766555443
No 129
>PRK15491 replication factor A; Provisional
Probab=93.61 E-value=0.3 Score=52.53 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=75.6
Q ss_pred CcccccccccCCcccccccccccceeehhhccCCCCCCCCCCCEEEEEEEEEee-------eecC-CceeEEEEEecCCC
Q 008405 6 LPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG-------REQG-KGSFAFLEVNDGSC 77 (567)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i-------R~~g-k~~l~FidLrD~~~ 77 (567)
|+.++-|+|=+..+---......-++|++|.. ....|++.|||.++ |+.| .+++.=+.|-|.+|
T Consensus 34 l~d~~~A~~lva~elgv~~~~~~~~kI~dL~~--------~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG 105 (374)
T PRK15491 34 LCDVKTAALLVAHDLGVTDTGVDTTKIADINE--------SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG 105 (374)
T ss_pred CccHHHHHHHHhhhcCCCccccccccHHHCCC--------CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC
Confidence 44455555544422211111234567888863 34789999999876 3224 22566678999997
Q ss_pred CceeEEEEeCCccc-cc-cCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 78 PANLQVIVDKDVAD-LG-QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 78 ~~~iQvv~~~~~~~-~~-~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
. |++++..+..+ +. ..|..|++|.|.|.+...- +.+||.+.+-..+.+++
T Consensus 106 ~--ir~tlW~~~a~~~~~~~le~G~v~~I~~~~~~~y----~g~Ei~i~~~~~i~~~~ 157 (374)
T PRK15491 106 S--IRLTLWDDLADLIKTGDIEVGKSLNISGYAKEGY----SGIEVNIGRYGGISESD 157 (374)
T ss_pred e--EEEEEECchhhhhccCCcCCCCEEEEeeeeccCc----ccEEEEeCCCceeeecc
Confidence 5 99999887643 22 4589999999999855443 24899998888887764
No 130
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=93.50 E-value=1.1 Score=40.74 Aligned_cols=87 Identities=17% Similarity=0.112 Sum_probs=59.3
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeee-------ecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCc
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR-------EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR-------~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs 100 (567)
+.++|+||.. ....|.+.|.|.++. +.|++.+.-+.|.|.||. |.+.+..+. ...+..||
T Consensus 3 ~~~kI~dL~~--------g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~---a~~l~~Gd 69 (129)
T PRK06461 3 MITKIKDLKP--------GMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ---AGSLKEGE 69 (129)
T ss_pred CceEHHHcCC--------CCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc---cccCCCCC
Confidence 4577888873 125788888888431 223223666788999974 999988764 34578999
Q ss_pred EEEEE-eEEeCCCCCCcceeEEEEeE---EEEecC
Q 008405 101 CVYVE-GMLKNPPEGTKQKIELRVQK---VVDVGM 131 (567)
Q Consensus 101 ~V~V~-G~v~~~~~~~~~~lEl~~~~---i~vls~ 131 (567)
+|.|. |.+..-. +.++|.+.+ +..+..
T Consensus 70 vV~I~na~v~~f~----G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 70 VVEIENAWTTLYR----GKVQLNVGKYGSISESDD 100 (129)
T ss_pred EEEEECcEEeeeC----CEEEEEECCCEEEEECCc
Confidence 99999 5554433 578999984 555543
No 131
>PRK14699 replication factor A; Provisional
Probab=93.45 E-value=0.47 Score=52.67 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCcccccccccCCcccccccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeee-------ecCCc-eeEEEEEecCC
Q 008405 5 ELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR-------EQGKG-SFAFLEVNDGS 76 (567)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR-------~~gk~-~l~FidLrD~~ 76 (567)
-|+.|+-|+|-+..+---...-+.-.+|+||.. .+..|.+.|+|.++- ..|+. +++=+.|-|.|
T Consensus 33 gl~de~~a~mlva~e~~~~~~~~~~~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeT 104 (484)
T PRK14699 33 GLCDEPMAAMLVANELGFSDAGRDSVKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDET 104 (484)
T ss_pred CCcChHHHHhhhhHhhCCCccccccccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCC
Confidence 456677777755433100111123456888863 357899999998873 33321 35556789999
Q ss_pred CCceeEEEEeCCcccccc--CCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCC
Q 008405 77 CPANLQVIVDKDVADLGQ--LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP 140 (567)
Q Consensus 77 ~~~~iQvv~~~~~~~~~~--~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~ 140 (567)
|. |.+++..+..+... .|..||+|.|.|.++.-. +++||.+.+..++.++. ...+++
T Consensus 105 G~--ir~tlW~~~a~~~~~g~l~~GDvv~I~~~~r~~~----~g~el~~~~~~~i~~~~-~~i~v~ 163 (484)
T PRK14699 105 GK--IKLTLWDNMADLIKAGKIKAGQTLQISGYAKQGY----SGVEVNIGNNGVLTESE-EEIDVA 163 (484)
T ss_pred Ce--EEEEEecCccchhhhcCCCCCCEEEEcceeccCC----CCceEEeCCCceeeccC-cccccC
Confidence 75 99999887643322 499999999999653322 34799988777776653 334443
No 132
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.30 E-value=0.34 Score=53.74 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=37.3
Q ss_pred cEEEEecccccCCCC--CCCCccccccceeeeccCCHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSH--TSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVK 369 (567)
Q Consensus 323 rVFeI~~~FR~E~~~--t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~ 369 (567)
++|||...||+|--. +---.-||+|=|.|..+.|.+++....+.++.
T Consensus 131 ~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 131 KLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred ceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 899999999999531 11134699999999999999999887777664
No 133
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.19 E-value=0.17 Score=57.26 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=37.7
Q ss_pred cEEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHHHh
Q 008405 323 NVYTFGPTFRAEHSHTSRH----LAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWL 375 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rH----lpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~ 375 (567)
|++|+|.|||.|.+ +.-| +-+|||=|.-. |+..+++.+.+.+.+..+....
T Consensus 303 r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 303 RLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred hhhhcceeecccCc-chhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999977 4444 46899988743 5667777777777766665543
No 134
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=92.67 E-value=0.28 Score=54.65 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=35.9
Q ss_pred cEEE-EecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHH
Q 008405 323 NVYT-FGPTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFe-I~~~FR~E~~--~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~ 370 (567)
|+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++.+++.+..++++.+
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKY 386 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHH
Confidence 7899 5599999952 221223489999998 788999999988888843
No 135
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=92.39 E-value=0.46 Score=57.55 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=61.9
Q ss_pred CCCEEEEEEEEEeeeec--CCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeEEE
Q 008405 46 AGRQVRVGGWVKTGREQ--GKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~--gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~ 122 (567)
.|..|+|+|+|..++.. +|+ ++|+.|.|.+|. +.+++-++. ..+...+..|.++.|+|++.... +.+.+.
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkG-maf~~leD~~g~--~e~~ifp~~~~~~~~~l~~~~~~~v~g~v~~~~----~~~~~~ 1024 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASG-VTFLTLEDETGM--VNVVVWPGLWERQRREALGARLLLVRGRVQNAE----GVRHLV 1024 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCc-eEEEEEecCCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEEEE
Confidence 57889999999988765 444 999999999975 999998765 22345688999999999997643 467888
Q ss_pred EeEEEEecC
Q 008405 123 VQKVVDVGM 131 (567)
Q Consensus 123 ~~~i~vls~ 131 (567)
++++.-+..
T Consensus 1025 ~~~i~~~~~ 1033 (1046)
T PRK05672 1025 ADRLEDLSP 1033 (1046)
T ss_pred EeeeechHH
Confidence 888765543
No 136
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=92.06 E-value=0.82 Score=39.85 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=52.7
Q ss_pred CEEEEEEEEEe---eee------cCCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEe-EEeCCCCC--
Q 008405 48 RQVRVGGWVKT---GRE------QGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEG-MLKNPPEG-- 114 (567)
Q Consensus 48 ~~V~v~GwV~~---iR~------~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G-~v~~~~~~-- 114 (567)
..++|+|||.+ +|. .| ++.-++|.|..| ..|++.+.++. ..|...|..|+++.+.| .|......
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g--~~~~~~l~De~~-~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~ 86 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEG--KLFSFDLLDEDG-GEIRATFFNDAVDKFYDLLEVGKVYYISKGSVKVANKKFN 86 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCc--EEEEEEEEECCC-CEEEEEEehHHHHHhhcccccccEEEEeccEEeeccccCC
Confidence 46899999974 332 24 688899999944 36999998765 34667899999999986 45444221
Q ss_pred -CcceeEEEEeE
Q 008405 115 -TKQKIELRVQK 125 (567)
Q Consensus 115 -~~~~lEl~~~~ 125 (567)
....+||...+
T Consensus 87 ~~~~~yeI~f~~ 98 (104)
T cd04474 87 TLKNDYEITFNR 98 (104)
T ss_pred CCCCcEEEEECC
Confidence 34677777654
No 137
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.86 E-value=0.53 Score=57.55 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCEEEEEEEEEeeeec----CCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 46 AGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~----gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
.|.+|+|.|.|..+|.. |+ .++|+.|.|.+|. +.+++-++. ..+...|..|.+|.|+|++.... +.+.
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~-~maf~~leD~tg~--~e~vvFp~~y~~~~~~l~~~~~~~v~g~v~~~~----~~~~ 1071 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGD-RMAILQLEDLTGS--CEAVVFPKSYERLSDHLMTDTRLLVWAKVDRRD----DRVQ 1071 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCC-EEEEEEEEECCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEE
Confidence 47899999999888643 43 4999999999975 999998664 22345688999999999997643 3577
Q ss_pred EEEeEEEEec
Q 008405 121 LRVQKVVDVG 130 (567)
Q Consensus 121 l~~~~i~vls 130 (567)
|.++++.-+.
T Consensus 1072 ~~~~~i~~l~ 1081 (1170)
T PRK07374 1072 LIIDDCREID 1081 (1170)
T ss_pred EEEeeeecHh
Confidence 8888776553
No 138
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=91.85 E-value=1.7 Score=37.73 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=48.9
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEE
Q 008405 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~ 123 (567)
.+.|+.|++-|+|.+.+... +.+.+..| ..++|.++... .+..+-+|+|.|+|.. ...|.+
T Consensus 12 ~f~gk~V~ivGkV~~~~~~~------~~~~~~Dg-~~v~v~l~~~~-----~~~~~~~vEViG~V~~-------~~~I~~ 72 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGDS------LTLISSDG-VNVTVELNRPL-----DLPISGYVEVIGKVSP-------DLTIRV 72 (101)
T ss_pred hhCCCEEEEEEEEEEecCCe------EEEEcCCC-CEEEEEeCCCC-----CcccCCEEEEEEEECC-------CCeEEE
Confidence 68999999999999886532 33444433 35999988653 3567789999999963 245777
Q ss_pred eEEEEecC
Q 008405 124 QKVVDVGM 131 (567)
Q Consensus 124 ~~i~vls~ 131 (567)
..+..++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 76666654
No 139
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.82 E-value=0.5 Score=57.69 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=61.9
Q ss_pred CCCEEEEEEEEEeeeec----CCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 46 AGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~----gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
.|+.|++.|.|.++|.. |+ .++|+.|.|.+|. +.+++-++. ..+...+..|++|.|+|++.... +.+.
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~-~mafltLeD~TG~--iEvviFp~~ye~~~~~L~~g~iV~V~GkVe~~~----~~~q 1048 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGN-KMAIVTLEDLSGR--IEVMLFSEALEKYRDLLEEDRIVVVKGQVSFDD----GGLR 1048 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCC-eEEEEEEEeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEE
Confidence 47899999999888654 33 4999999999975 999998765 33455689999999999997643 4678
Q ss_pred EEEeEEEEecC
Q 008405 121 LRVQKVVDVGM 131 (567)
Q Consensus 121 l~~~~i~vls~ 131 (567)
|.++++.-+..
T Consensus 1049 lii~~I~~L~~ 1059 (1135)
T PRK05673 1049 LTAREVMDLEE 1059 (1135)
T ss_pred EEEeecccHHH
Confidence 88887766643
No 140
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=91.78 E-value=1 Score=39.68 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCC
Q 008405 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~ 112 (567)
++.|+.|+|-|+|.+....| +.+-+.-.|+ ..|+|.+.... .+..+.+|+|.|+|....
T Consensus 15 ~~~gk~VrivGkv~~~~~~g--~~~~l~~~d~---~~V~v~l~~~~-----~~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 15 QFVGKTVRIVGKVESVDPDG--GSATLSTSDG---GQVTVSLNPPS-----DEELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GGTTSEEEEEEEEEEE-TTS--SEEEEE-TTS----EEEEEESS-------SS---SEEEEEEEE-TTS
T ss_pred hhCCCeEEEEEEEeeEcCCC--CEEEEEcCCC---CEEEEEeCCCC-----CCCCCCEEEEEEEEcCCC
Confidence 68999999999999998777 3443343465 35887777553 244688999999997554
No 141
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=91.54 E-value=0.48 Score=43.45 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=40.1
Q ss_pred CCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccccc--CCCCCcEEEEEeEEeCC
Q 008405 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQ--LVPTGTCVYVEGMLKNP 111 (567)
Q Consensus 43 ~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~--~l~~gs~V~V~G~v~~~ 111 (567)
..+.|+.|.|.|.|..++.... +-.++...+..+...+++.++.+...... .|+.|+-|.|+|++..-
T Consensus 63 ~kY~gK~i~vtG~V~~I~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 63 KKYKGKIIEVTGTVSSIDKGFG-DNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICTGY 132 (144)
T ss_dssp HHHTT-EEEEEEEEEEEEE-ST-T-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE----
T ss_pred hhcCCCEEEEEEEEEEEEEcCC-CcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEEee
Confidence 3567999999999999977332 34566666655556789888876633323 48999999999998543
No 142
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.34 E-value=0.57 Score=56.89 Aligned_cols=78 Identities=15% Similarity=0.282 Sum_probs=60.3
Q ss_pred CCCEEEEEEEEEeeee----cCCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 46 AGRQVRVGGWVKTGRE----QGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~----~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
.|+.|+|.|.|..+|. .|+ .++|+.|.|.+|. +.+++-++. ..+...+..|.+|.|+|++.... +...
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~-~maf~~leD~tg~--~e~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~----~~~~ 1014 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQ-KMAFITFCDQNDE--MEAVVFPETYIHFSDKLQEGAIVLVDGTIELRN----HKLQ 1014 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCC-eEEEEEEeeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CcEE
Confidence 4778999999988853 344 4999999999975 999998764 23445688999999999997643 3577
Q ss_pred EEEeEEEEec
Q 008405 121 LRVQKVVDVG 130 (567)
Q Consensus 121 l~~~~i~vls 130 (567)
+.++++.-+.
T Consensus 1015 ~~~~~i~~l~ 1024 (1107)
T PRK06920 1015 WIVNGLYPLE 1024 (1107)
T ss_pred EEEeecccHH
Confidence 8888776554
No 143
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.26 E-value=0.68 Score=56.60 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=60.6
Q ss_pred CCCEEEEEEEEEeeeec----CCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 46 AGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~----gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
.|+.|+|.|.|..+|.. |+ .++|+.|.|.+|. +.+++-++. ..+...+..|.+|.|+|++..... +.+.
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~-~maf~~leD~~g~--~e~~vfp~~~~~~~~~l~~~~~~~v~g~v~~~~~---~~~~ 1063 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNE-MMAFLTLEDLYGT--VEVIVFPKVYEKYRSLLNEDNIVLIKGRVSLRED---EEPK 1063 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCC-eEEEEEEEECCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC---CceE
Confidence 47889999999888743 33 3999999999975 999998764 234456889999999999975432 3578
Q ss_pred EEEeEEEEec
Q 008405 121 LRVQKVVDVG 130 (567)
Q Consensus 121 l~~~~i~vls 130 (567)
+.++++.-+.
T Consensus 1064 ~~~~~~~~l~ 1073 (1151)
T PRK06826 1064 LICEEIEPLV 1073 (1151)
T ss_pred EEEeeeecHh
Confidence 8888776554
No 144
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=91.02 E-value=3.7 Score=37.43 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=52.3
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEE--eeeec--CCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVK--TGREQ--GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~--~iR~~--gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~ 105 (567)
.+..++.. .....|+.|+|.|+|. ++... +. .+.| .|.|+. ..|.|+.....+ ..++.|..|-|+
T Consensus 37 ~t~se~~~----~~~~~~~~vrv~G~V~~gSv~~~~~~~-~~~F-~i~D~~--~~i~V~Y~G~~P---d~F~eg~~VVv~ 105 (131)
T PF03100_consen 37 LTPSELAA----EPQKVGRKVRVGGLVVEGSVEYDPDGN-TLTF-TITDGG--KEIPVVYTGPLP---DLFREGQGVVVE 105 (131)
T ss_dssp E-TTTTTT----TST-TTSEEEEEEEEECTTEEE-TTSS-EEEE-EEE-SS---EEEEEEES--C---TT--TTSEEEEE
T ss_pred cCHHHHhh----ccccCCceEEEeeEEccCCEEEcCCCC-EEEE-EEEECC--cEEEEEECCCCC---ccccCCCeEEEE
Confidence 45566663 2234799999999997 66542 33 5887 568885 469999887654 357789999999
Q ss_pred eEEeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 106 GMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 106 G~v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
|++.... ..+++ ++|.+|+
T Consensus 106 G~~~~~g-------~F~A~--~lL~Kcp 124 (131)
T PF03100_consen 106 GRLGEDG-------VFEAT--ELLAKCP 124 (131)
T ss_dssp EEECCTS-------EEEEE--EEEETS-
T ss_pred EEECCCC-------EEEEE--EEEeCCC
Confidence 9983222 35555 6788885
No 145
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=90.81 E-value=1.5 Score=46.14 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=56.1
Q ss_pred CCEEEEEEEEEeee----ecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEE
Q 008405 47 GRQVRVGGWVKTGR----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (567)
Q Consensus 47 g~~V~v~GwV~~iR----~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~ 122 (567)
|+.|..-.-|.++. +.|+ ....+.|.|.||. |...+..........+..|++|.|.|.+..-+ |.+.|.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~-~yl~l~l~D~tG~--I~ak~W~~~~~~~~~~~~g~vv~v~G~v~~y~----g~~Ql~ 83 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGK-PFLTLILQDKSGD--IEAKLWDVSPEDEATYVPETIVHVKGDIINYR----GRKQLK 83 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCC-eEEEEEEEcCCcE--EEEEeCCCChhhHhhcCCCCEEEEEEEEEEEC----CcceEE
Confidence 55555444454442 3454 3666777899875 99999766544455689999999999998655 467789
Q ss_pred EeEEEEecCC
Q 008405 123 VQKVVDVGMV 132 (567)
Q Consensus 123 ~~~i~vls~~ 132 (567)
+.+++++.+.
T Consensus 84 i~~i~~~~~~ 93 (314)
T PRK13480 84 VNQIRLATEE 93 (314)
T ss_pred EEEeEECCCC
Confidence 9999988764
No 146
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=90.62 E-value=2.1 Score=33.68 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=43.5
Q ss_pred EEEEEEeeeec---CCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEE
Q 008405 52 VGGWVKTGREQ---GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (567)
Q Consensus 52 v~GwV~~iR~~---gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i 126 (567)
+.|.|.+++.. |+ ++.-+.+.|+++. +.++.-+........+..|+.+.|.|++.... +.++|.-.++
T Consensus 2 i~~~V~~~~~~~~~~~-~~~~~~~~D~~g~--i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~~~----~~~qi~~P~~ 72 (75)
T cd04488 2 VEGTVVSVEVVPRRGR-RRLKVTLSDGTGT--LTLVFFNFQPYLKKQLPPGTRVRVSGKVKRFR----GGLQIVHPEY 72 (75)
T ss_pred EEEEEEEEEeccCCCc-cEEEEEEEcCCCE--EEEEEECCCHHHHhcCCCCCEEEEEEEEeecC----CeeEEeCCcE
Confidence 45666554321 33 4677788999764 99888653221245689999999999997654 3555554433
No 147
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.50 E-value=0.28 Score=51.42 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-+|.-.++++.+++-|++-|=.+|.-|+|++.
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~ 82 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSK 82 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChH
Confidence 35778899999999999999999999999764
No 148
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=89.64 E-value=1.5 Score=47.77 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=61.0
Q ss_pred CEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc-cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEE
Q 008405 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (567)
Q Consensus 48 ~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i 126 (567)
..|+|.|-|.+++...++ -.|+.|.|... .|++++.+.... +.-.+..|+-|.|.|.+..=+. .|.+-|.++++
T Consensus 24 ~~V~v~GEISn~t~~~sg-H~YFtLKD~~A--~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~~--rG~YQi~~~~~ 98 (440)
T COG1570 24 GQVWVRGEISNFTRPASG-HLYFTLKDERA--QIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYEP--RGDYQIVAESM 98 (440)
T ss_pred CeEEEEEEecCCccCCCc-cEEEEEccCCc--eEEEEEEcCcccccCCCccCCCEEEEEEEEEEEcC--CCceEEEEecC
Confidence 579999999999988864 89999999975 599999876532 2335789999999999876552 37899999988
Q ss_pred EE
Q 008405 127 VD 128 (567)
Q Consensus 127 ~v 128 (567)
+-
T Consensus 99 ~p 100 (440)
T COG1570 99 EP 100 (440)
T ss_pred Cc
Confidence 63
No 149
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=89.51 E-value=1.1 Score=54.18 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=56.7
Q ss_pred CCEEEEEEEEEeeee-----cCCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 47 GRQVRVGGWVKTGRE-----QGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 47 g~~V~v~GwV~~iR~-----~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
++.+.+.|+|..+|. .|+ .++|+.|.|.+|. +.+++-++. ..+...+..|.+|.|+|++.... +.+.
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~-~maf~~leD~~g~--ie~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~----~~~~ 956 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQ-QMAFLSVTDTKKK--LDVTLFPETYRQYKDELKEGKFYYLKGKIQERD----GRLQ 956 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCC-eEEEEEEeeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeeE
Confidence 567889999987653 355 5999999999975 999998764 23445688999999999997643 4667
Q ss_pred EEEeEEE
Q 008405 121 LRVQKVV 127 (567)
Q Consensus 121 l~~~~i~ 127 (567)
+.++++.
T Consensus 957 l~~~~i~ 963 (1034)
T PRK07279 957 MVLQQIQ 963 (1034)
T ss_pred EEEeeee
Confidence 7777664
No 150
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=89.22 E-value=2.3 Score=43.70 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 163 ~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
+.-+..|..|...+++.|.+.||-||+||++-.
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~ 36 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEK 36 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchh
Confidence 344567888999999999999999999999954
No 151
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=88.47 E-value=3.6 Score=34.83 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=45.6
Q ss_pred EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCC
Q 008405 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 50 V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~ 112 (567)
=.+.|.|++++..+. =+|+.|+|.+|. ++..+.++.. .+...|..|+++-.+-.-.-++
T Consensus 5 p~l~v~Iks~~~~~~--D~~v~l~DpTG~--i~~tiH~~v~~~y~~~l~~GavLlLk~V~Vf~p 64 (86)
T PF15072_consen 5 PCLVVIIKSIVPSSE--DAFVVLKDPTGE--IRGTIHRKVLEEYGDELSPGAVLLLKDVTVFSP 64 (86)
T ss_pred CEEEEEEEEeeccCC--CeEEEEECCCCc--EEEEEeHHHHhhcCCccccCEEEEEeeeeEEec
Confidence 358899999999995 489999999985 9999987652 3556788888887765544444
No 152
>PRK07211 replication factor A; Reviewed
Probab=88.34 E-value=2 Score=47.67 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=70.4
Q ss_pred CcccccccccCCcccccccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeee------c---CCceeEEEEEecCC
Q 008405 6 LPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE------Q---GKGSFAFLEVNDGS 76 (567)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~------~---gk~~l~FidLrD~~ 76 (567)
|+-|.-|+|-+..+. ....-.+|++|.. -...|+|.|||.++-. . +.+++.=+.|-|.+
T Consensus 34 l~dE~~aamlva~el----g~~e~~~I~dL~p--------g~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeT 101 (485)
T PRK07211 34 LADEETAAMLIAHEL----RDEEVNGIADIEP--------GMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADET 101 (485)
T ss_pred CcCHHHHHHHHHHHh----CccccccHhhCCC--------CCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCC
Confidence 455666666555442 1223346777752 2367999999976533 2 12378889999999
Q ss_pred CCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEE
Q 008405 77 CPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 77 ~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
|. |.+++.++.. .+...|..|+++.|.|.++..- +.+||.+.++.
T Consensus 102 G~--Ir~TlW~d~ad~~~~~Le~GdV~~I~~~~~~~y----s~~El~i~~ve 147 (485)
T PRK07211 102 GS--VRVAFWDEQAVAAEEELEVGQVLRIKGRPKDGY----NGLEVSVDKVE 147 (485)
T ss_pred Ce--EEEEEechHhHhhhcccCCCCEEEEeceEeccc----cceEEEEeeEE
Confidence 75 9999987753 2456799999999999875332 35788888643
No 153
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=88.30 E-value=6.1 Score=36.91 Aligned_cols=88 Identities=26% Similarity=0.396 Sum_probs=59.3
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEE--eeee-cCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEe
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVK--TGRE-QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~--~iR~-~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G 106 (567)
.+..++.. +....|+.|+|.|+|. ++.. .+. .+.| .|.|+. ..|.|..+...+ ..++.|..|-|+|
T Consensus 38 ~tpse~~~----~~~~~g~~vrvgG~V~~gSi~~~~~~-~~~F-~ltD~~--~~i~V~Y~G~lP---d~F~eg~~VVv~G 106 (148)
T PRK13254 38 YTPSEVAE----GEAPAGRRFRLGGLVEKGSVQRGDGL-TVRF-VVTDGN--ATVPVVYTGILP---DLFREGQGVVAEG 106 (148)
T ss_pred eCHHHHhc----CCccCCCeEEEeEEEecCcEEeCCCC-EEEE-EEEeCC--eEEEEEECCCCC---ccccCCCEEEEEE
Confidence 34556653 2236799999999994 4544 443 5787 678985 458888876553 3467899999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEecCCCCCCCC
Q 008405 107 MLKNPPEGTKQKIELRVQKVVDVGMVDPAKYP 138 (567)
Q Consensus 107 ~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~P 138 (567)
++... + ..+++ +||.+|+ ..|-
T Consensus 107 ~~~~~-----g--~F~A~--~vLaKc~-skY~ 128 (148)
T PRK13254 107 RLQDG-----G--VFVAD--EVLAKHD-ENYM 128 (148)
T ss_pred EECCC-----C--eEEEE--EEEecCC-CCCC
Confidence 98422 1 34555 6888886 4553
No 154
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.95 E-value=3 Score=45.72 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred CCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 47 g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
-..|+|.|=|.+.+.+++| =+|+.|.|... .|-||+.+... .....+..|+-|.|.|.+.--+. .|.+.|.|.+
T Consensus 23 ~~~v~v~gEis~~~~~~sG-H~Yf~Lkd~~a--~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~y~~--~g~~ql~v~~ 97 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSG-HWYFTLKDEIA--QIRCVMFKGSARRLKFKPEEGMKVLVRGKVSLYEP--RGDYQLIVEE 97 (438)
T ss_pred CCcEEEEEEeCCCeeCCCC-eEEEEEEcCCc--EEEEEEEcChhhcCCCCCCCCCEEEEEEEEEEECC--CCCEEEEEEE
Confidence 4689999999999877543 79999999864 59999987642 23345789999999999875331 3679999999
Q ss_pred EEEec
Q 008405 126 VVDVG 130 (567)
Q Consensus 126 i~vls 130 (567)
|...+
T Consensus 98 i~~~g 102 (438)
T PRK00286 98 IEPAG 102 (438)
T ss_pred eeeCC
Confidence 97543
No 155
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=87.40 E-value=3.1 Score=45.73 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=58.9
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
.|+|.|=|.+.+.+.+| =+|+.|.|... .|.||+.++.. ...-.+..|+-|.|.|.+.--+. .|.+.|.|++++
T Consensus 19 ~v~V~GEisn~~~~~sG-H~YFtLkD~~a--~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~--~G~~ql~v~~i~ 93 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSG-HWYFTLKDENA--QVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEP--RGDYQIICFEMQ 93 (432)
T ss_pred cEEEEEEecCCeeCCCc-eEEEEEEcCCc--EEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECC--CCcEEEEEEEec
Confidence 89999999999876553 79999999864 59999987642 12335789999999999865442 367999999987
Q ss_pred E
Q 008405 128 D 128 (567)
Q Consensus 128 v 128 (567)
.
T Consensus 94 ~ 94 (432)
T TIGR00237 94 P 94 (432)
T ss_pred c
Confidence 4
No 156
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.26 E-value=0.32 Score=51.47 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=28.3
Q ss_pred hhcCCcEEEEecccccCCCCCCCCccccccceeeeccC
Q 008405 318 ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS 355 (567)
Q Consensus 318 ~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~ 355 (567)
..+...---.|-|||-..++ .+|.|=|.++|--..+.
T Consensus 148 ~~~~~~flv~~DVyrrdeid-sthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 148 QKGLDGFLVTGDVYRRDEID-STHYPVFHQMEGVRLWS 184 (436)
T ss_pred Hhcccccceeeeeeeecccc-ccccceeccccceeEEe
Confidence 34456666778889999885 78999999999765544
No 157
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=86.45 E-value=3.4 Score=45.95 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=36.4
Q ss_pred cEEEEe-cccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFG-PTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~-~~FR~E~~--~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l 371 (567)
++|++. +|||.|.. ++-.=.-||+|.|.-. +++.++..+..++++...
T Consensus 337 k~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 337 KFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELA 387 (520)
T ss_pred eEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 789955 79999974 2222334999999987 889999888888877543
No 158
>PRK12366 replication factor A; Reviewed
Probab=85.51 E-value=4.8 Score=46.44 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=62.5
Q ss_pred cceeehhhccCCCCCCCC-CCCEEEEEEEEEee---ee----cCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCC
Q 008405 28 DRVLIKSILTRPDGGAGL-AGRQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~-~g~~V~v~GwV~~i---R~----~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~g 99 (567)
..++|++|. .+ .|+.++|+|||.++ |. -|.+++.=++|.|.+|. |.+++.++..+....+..|
T Consensus 278 ~~~pI~~L~-------~~~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG~--IR~t~w~~~~d~~~~l~~G 348 (637)
T PRK12366 278 EIVNIEELT-------EFEDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTGR--VRVSFWGEKAKILENLKEG 348 (637)
T ss_pred CceeHHHCC-------cccCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCCe--EEEEEeCchhhhhcccCCC
Confidence 445666665 23 57899999999876 32 22237888999999874 9999987753322246799
Q ss_pred cEEEEEeEEeCCCC--CCcceeEEEEeEEEEec
Q 008405 100 TCVYVEGMLKNPPE--GTKQKIELRVQKVVDVG 130 (567)
Q Consensus 100 s~V~V~G~v~~~~~--~~~~~lEl~~~~i~vls 130 (567)
++|.+.|-..+.-. ...+++||.+..-..+.
T Consensus 349 ~vy~is~~~vk~y~~~~~~~~~El~~~~~s~I~ 381 (637)
T PRK12366 349 DAVKIENCKVRTYYDNEGEKRVDLNAGYSSEII 381 (637)
T ss_pred CEEEEecCEEeeccccCCCcCEEEEcCCceEEE
Confidence 99999875554210 12357898886555443
No 159
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=85.12 E-value=13 Score=30.92 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=47.2
Q ss_pred EEEEEEEEee--e--ecCCceeEEEEEecCCCCceeEEEEeC-CccccccCCC-CCcEEEEEeEEeCCCCCCcceeEEEE
Q 008405 50 VRVGGWVKTG--R--EQGKGSFAFLEVNDGSCPANLQVIVDK-DVADLGQLVP-TGTCVYVEGMLKNPPEGTKQKIELRV 123 (567)
Q Consensus 50 V~v~GwV~~i--R--~~gk~~l~FidLrD~~~~~~iQvv~~~-~~~~~~~~l~-~gs~V~V~G~v~~~~~~~~~~lEl~~ 123 (567)
|.|.|-|-.+ | +.|+ .+.-+.|.|.++. |-|-.-. +.......|. .|+.|.|.|.+....- .+++.+.+
T Consensus 2 v~i~G~Vf~~e~re~k~g~-~i~~~~itD~t~S--i~~K~F~~~~~~~~~~ik~~G~~v~v~G~v~~D~f--~~e~~~~i 76 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGR-KILTFKVTDYTSS--ITVKKFLRKDEKDKEELKSKGDWVRVRGKVQYDTF--SKELVLMI 76 (82)
T ss_pred EEEEEEEEEEEEEEecCCC-EEEEEEEEcCCCC--EEEEEeccCChhHHhhcccCCCEEEEEEEEEEccC--CCceEEEe
Confidence 6788888544 2 3453 3656899998864 5544322 2211124588 9999999999987653 25777777
Q ss_pred eEEE
Q 008405 124 QKVV 127 (567)
Q Consensus 124 ~~i~ 127 (567)
..+.
T Consensus 77 ~~i~ 80 (82)
T cd04484 77 NDIE 80 (82)
T ss_pred eeEE
Confidence 6654
No 160
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=84.91 E-value=7.4 Score=32.00 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=40.1
Q ss_pred eeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEE-eEEeCCCCCCcceeEEEEeEEE
Q 008405 66 SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 66 ~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~-G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
++.=+.|.|.+|. |.+++..... ...+..|++|.++ |.+..-. +.++|.+.+..
T Consensus 23 ~~~~~~l~D~TG~--i~~~~W~~~~--~~~~~~G~vv~i~~~~v~~~~----g~~ql~i~~~~ 77 (82)
T cd04491 23 KVQSGLVGDETGT--IRFTLWDEKA--ADDLEPGDVVRIENAYVREFN----GRLELSVGKNS 77 (82)
T ss_pred EEEEEEEECCCCE--EEEEEECchh--cccCCCCCEEEEEeEEEEecC----CcEEEEeCCce
Confidence 5666778999874 9999887643 3468999999999 7776544 57888876543
No 161
>PRK12366 replication factor A; Reviewed
Probab=84.10 E-value=6.1 Score=45.61 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=61.4
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEee---e----ecC-CceeEEEEEecCCCCceeEEEEeCCccccccCCCC
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPT 98 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i---R----~~g-k~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~ 98 (567)
..-++|++|.. -...|++.|||.++ | ..| .+++.=++|.|.+|. |.+++..+..++...|..
T Consensus 61 ~~~~~I~dl~p--------~~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~--Ir~t~W~~~~~~~~~le~ 130 (637)
T PRK12366 61 EEDFKISDIEE--------GQINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGT--IRLTLWNDNAKLLKGLKE 130 (637)
T ss_pred cceeEHHHCcC--------CCcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCE--EEEEEEchhhhhhccCCC
Confidence 34667888863 23469999999765 3 222 226888899999974 999998876444457899
Q ss_pred CcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 99 GTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 99 gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
|+++.+.|-..+.- .+.+||...+
T Consensus 131 G~v~~i~~~~v~~~---~~~~el~~~~ 154 (637)
T PRK12366 131 GDVIKIENARSRKW---NNDVELNSGS 154 (637)
T ss_pred CCEEEEeccEeccc---CCceEEEcCC
Confidence 99999998765543 2578887643
No 162
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=84.09 E-value=0.87 Score=49.29 Aligned_cols=49 Identities=4% Similarity=-0.039 Sum_probs=34.4
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCC-HH---HHHHHHHHHHHHH
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD-LK---DDMNCAEAYVKFM 371 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d-~~---~lm~~~E~li~~l 371 (567)
-|.|++|+|||.+.....|. -||+|+.+|.-+.+ .. +++.++-+.++.+
T Consensus 102 ~R~~Y~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 102 ARLCYAGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred eEEEEeeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 38999999999987643443 59999999987654 22 4555555555443
No 163
>PRK07217 replication factor A; Reviewed
Probab=83.24 E-value=13 Score=38.79 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=67.6
Q ss_pred ccccceeehhhccCCCCCCCCCCCEEEEEEEEEee--eecCCceeEE-EEEecCCCCceeEEEEeCCccccccCCCCCcE
Q 008405 25 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG--REQGKGSFAF-LEVNDGSCPANLQVIVDKDVADLGQLVPTGTC 101 (567)
Q Consensus 25 ~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i--R~~gk~~l~F-idLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~ 101 (567)
.-+.-++|+||.. .++-|+|.|+|..+ +.++ .+.. -.|-|.||. |-.++..+.. ...+..|++
T Consensus 68 ~~~~~~kI~Di~~--------~~~~VsV~aKVl~l~e~~~~--si~qvGllgDETG~--IkfT~W~~s~--~~~leeGd~ 133 (311)
T PRK07217 68 GGSELVNIADIDE--------PEQWVDVTAKVVQLWEPSSD--SIAQVGLLGDETGT--IKFTKWAKSD--LPELEEGKS 133 (311)
T ss_pred CCCCceeeeecCC--------CCCcEEEEEEEEEecCCCCC--ceEEEEEEEcCCce--EEEEEccCCC--CCcccCCCE
Confidence 3445667888763 57789999999877 4445 5777 567899875 8888876531 235889999
Q ss_pred EEEEeEEeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 102 V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
|.+.+.++..-. |.++|.+.+...+...+
T Consensus 134 ~rI~na~v~ey~---G~~~lnlg~~t~I~~~d 162 (311)
T PRK07217 134 YLLKNVVTDEYQ---GRFSVKLNRTTSIEELD 162 (311)
T ss_pred EEEEeEEEeeEC---CEEEEEeCCceEEEeCC
Confidence 999998876653 58999998887776643
No 164
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=82.99 E-value=9.6 Score=34.27 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=50.0
Q ss_pred EEEEEEEEEe---eee--cCCceeEEEEEe-------cCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC--
Q 008405 49 QVRVGGWVKT---GRE--QGKGSFAFLEVN-------DGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE-- 113 (567)
Q Consensus 49 ~V~v~GwV~~---iR~--~gk~~l~FidLr-------D~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~-- 113 (567)
.|.|.|||.+ +|. .|+ .++=+.|- +.+.+ +.|++-.+.. ...+.|+.|+-|.|+|.+....-
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~-~v~~fslAv~~~~~~~~t~w--~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d 81 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGS-VVCNLTLAVNRRSRDDEPDW--FNLEIWGKTAQVAADYVKKGSLIGITGSLKFDRWTD 81 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCC-EEEEEEEEecccccCCCceE--EEEEEehHHHHHHHHHcCCCCEEEEEEEEEecceEc
Confidence 5677777755 343 332 13333332 22333 6777765432 23456999999999999987632
Q ss_pred ---C-CcceeEEEEeEEEEecCC
Q 008405 114 ---G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 114 ---~-~~~~lEl~~~~i~vls~~ 132 (567)
| .....||.+++|..|+..
T Consensus 82 ~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 82 RNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred CCCCeEEEEEEEEEeEEEECcCC
Confidence 2 123589999999999753
No 165
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=82.76 E-value=1.3 Score=47.88 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=33.6
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC-H---HHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD-L---KDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d-~---~~lm~~~E~li~~ 370 (567)
|+|++|+|||.|... .-+.-||+|+.+|.-+.+ . -+++.++-+.+..
T Consensus 100 r~~y~g~vfR~~~~~-~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~ 150 (391)
T PRK12292 100 RLCYAGNVFRAQERG-LGRSREFLQSGVELIGDAGLEADAEVILLLLEALKA 150 (391)
T ss_pred EEEeeceeeecCCCc-CCCccchhccceEEeCCCCchHHHHHHHHHHHHHHH
Confidence 899999999999764 445679999999987654 2 2445444444443
No 166
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=82.74 E-value=0.74 Score=48.68 Aligned_cols=38 Identities=29% Similarity=0.652 Sum_probs=30.2
Q ss_pred HHhhcCCC-CcceeeecHHHHHHHHcCCCCccccccccCC
Q 008405 523 DLRRFGTV-KHSGFGLGFERMILFATGIDNIRDVIPFPRY 561 (567)
Q Consensus 523 ~a~~~G~P-P~gG~GiGiDRLlMll~g~~nIrdvi~FPr~ 561 (567)
..-+||.| |---.|+|+|||.|.|.|.++||.. .+|..
T Consensus 315 ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpqi 353 (536)
T COG2024 315 ALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQI 353 (536)
T ss_pred HHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hcccc
Confidence 34467776 7788999999999999999999964 45543
No 167
>PRK14699 replication factor A; Provisional
Probab=82.39 E-value=7.3 Score=43.42 Aligned_cols=85 Identities=13% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCCEEEEEEEEEeee-------ecC-CceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcc
Q 008405 46 AGRQVRVGGWVKTGR-------EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR-------~~g-k~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~ 117 (567)
.+..|.|.|+|.++= +.| .+++.=+.|.|++|. |.+++..+..++...+..|+.|.+.+...+-.. -.+
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~--Ir~T~W~~~a~~~~~i~~Gd~v~i~~~y~~~~~-~~~ 361 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGK--IRLTLWDEKTNFLDEIDFDETVEVLNAYSRENT-FSQ 361 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCe--EEEEEeCcccccccccCCCceEEEEeEEEEecc-CCc
Confidence 467899999998652 122 225667889999975 999998776555566889999998765544321 236
Q ss_pred eeEEEEeEEEEecCCC
Q 008405 118 KIELRVQKVVDVGMVD 133 (567)
Q Consensus 118 ~lEl~~~~i~vls~~~ 133 (567)
.+||.+.+-.++.+|.
T Consensus 362 ~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 362 QVELNLGARGIIQKSE 377 (484)
T ss_pred cEEEEecCceeEeecC
Confidence 8999999888888764
No 168
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=82.06 E-value=22 Score=33.65 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=55.9
Q ss_pred CCCCEEEEEEEEE--eeeecCCc-eeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEE
Q 008405 45 LAGRQVRVGGWVK--TGREQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (567)
Q Consensus 45 ~~g~~V~v~GwV~--~iR~~gk~-~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl 121 (567)
..|+.++|.|.|. ++.+.+.+ .+.| +|.|+. ..|.|....-.+ ..++.|.-|.|+|.+.... .+
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~--~~v~V~Y~GilP---DlFrEG~gVVveG~~~~~g-------~F 121 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAG--GSVTVTYEGILP---DLFREGQGIVAQGVLEEGN-------HI 121 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCC--eEEEEEEcccCC---ccccCCCeEEEEEEECCCC-------eE
Confidence 4799999999997 88776532 2466 778986 358888776543 3567899999999995322 34
Q ss_pred EEeEEEEecCCCCCCCC
Q 008405 122 RVQKVVDVGMVDPAKYP 138 (567)
Q Consensus 122 ~~~~i~vls~~~~~~~P 138 (567)
.++ +||.+|+ ..|-
T Consensus 122 ~A~--~vLAKhd-ekYm 135 (160)
T PRK13165 122 EAK--EVLAKHD-ENYT 135 (160)
T ss_pred EEE--EEEecCC-CCCC
Confidence 454 7899987 4553
No 169
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=81.17 E-value=27 Score=32.99 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=56.0
Q ss_pred CCCCEEEEEEEEE--eeeecCCc-eeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEE
Q 008405 45 LAGRQVRVGGWVK--TGREQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (567)
Q Consensus 45 ~~g~~V~v~GwV~--~iR~~gk~-~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl 121 (567)
..|+.++|.|.|. ++.+.+.+ .+.| +|.|+.. .|.|....-.+ ..++.|.-|-|+|.+.... .+
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilP---DlFrEG~gVVveG~~~~~g-------~F 121 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILP---DLFREGQGVVVQGTLEKGN-------HV 121 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCC---ccccCCCeEEEEEEECCCC-------EE
Confidence 4699999999997 77765421 2566 7899864 58888876654 3578899999999995332 24
Q ss_pred EEeEEEEecCCCCCCCC
Q 008405 122 RVQKVVDVGMVDPAKYP 138 (567)
Q Consensus 122 ~~~~i~vls~~~~~~~P 138 (567)
+++ +||.+|+ ..|-
T Consensus 122 ~A~--evLAKhd-ekYm 135 (159)
T PRK13150 122 LAH--EVLAKHD-ENYT 135 (159)
T ss_pred EEe--EEEeCCC-CCCC
Confidence 454 7899997 4553
No 170
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.31 E-value=11 Score=43.42 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=65.4
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEe---eee----cCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCc
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKT---GRE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGT 100 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~---iR~----~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs 100 (567)
-+.|++|.. + ....+|+|||.+ +|. .|.+++.-++|.|.++ .|++.+.++.. .|...|..|+
T Consensus 180 ~~pI~~L~p-------y-~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~dkf~~~l~eG~ 249 (608)
T TIGR00617 180 VMPIASLSP-------Y-QNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQADKFYDIIQEGK 249 (608)
T ss_pred eEEHHHCCC-------C-CCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHHHHHhhhcccCC
Confidence 445666652 2 345999999975 333 2212688889999665 59999988753 4667899999
Q ss_pred EEEEE-eEEeCCCC---CCcceeEEEEeEEEEecCCC
Q 008405 101 CVYVE-GMLKNPPE---GTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 101 ~V~V~-G~v~~~~~---~~~~~lEl~~~~i~vls~~~ 133 (567)
++.++ |.|..... .....+||...+-.++.+|.
T Consensus 250 VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 250 VYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred EEEECceEEEEccccccCCCCCEEEEECCCeEEEECC
Confidence 99996 56655432 13467999998888877764
No 171
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=80.06 E-value=2.3 Score=44.51 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=28.3
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
-|+|++|+|||.|.. ..-+.-||+|+.+|.-..+
T Consensus 88 ~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 88 LRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAG 121 (314)
T ss_pred eEEEEeceEeecCCC-cCCCcccccccceEEeCCC
Confidence 399999999999987 3556789999999986644
No 172
>PRK15491 replication factor A; Provisional
Probab=79.98 E-value=8.6 Score=41.44 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=63.0
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEeeee-------cCC-ceeEEEEEecCCCCceeEEEEeCCccccccCCCCCc
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE-------QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~-------~gk-~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs 100 (567)
+++|++|.. .+..|.|.|+|.++-. .|+ +++.=+.|.|.+|. |.+.+..+..+....|..|+
T Consensus 166 ~~~I~dl~~--------~~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~--Ir~t~W~~~a~~~~~l~~Gd 235 (374)
T PRK15491 166 SQKISDIKD--------GDSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGK--IRVTLWDGKTDLADKLENGD 235 (374)
T ss_pred cccHHHcCC--------CCccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCe--EEEEEecchhcccccCCCCC
Confidence 355666642 2345999999987742 342 13555888999874 99999877543335689999
Q ss_pred EEEEEeE-EeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 101 CVYVEGM-LKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 101 ~V~V~G~-v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
+|.+.+. ++... -.+.+||.+.+-..+.+|.
T Consensus 236 ~V~i~~~~~r~~~--~~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 236 SVEIINGYARTNN--YSQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred EEEEEeceEEEec--cCCCEEEEeCCCceEEECC
Confidence 9999764 54333 1368999987666676664
No 173
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=79.96 E-value=13 Score=38.12 Aligned_cols=75 Identities=27% Similarity=0.195 Sum_probs=55.3
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc---cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~---~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
.|.+-|||.++-....+ ++++|-|+++. |=+.......+ ....+..|..|.|.|.++.-. |...|.+.+
T Consensus 70 ~v~~VGivr~~e~~~t~--i~y~I~D~tg~--id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~f~----Gk~sl~~fk 141 (265)
T KOG3108|consen 70 AVSIVGIVRNIEKSATN--ITYEIEDGTGQ--IDVRQWFHDNAESEEMPALETGTYVKVYGHLKPFQ----GKKSLQVFK 141 (265)
T ss_pred EEEEEEEEEeceecCcc--eEEEEecCccc--EEEEEeccccchhhhCcccccCcEEEeeecccCCC----CceeEEEEe
Confidence 48899999999999854 77899999875 55555443211 234689999999999996554 467788877
Q ss_pred EEEecC
Q 008405 126 VVDVGM 131 (567)
Q Consensus 126 i~vls~ 131 (567)
|.-+-.
T Consensus 142 I~pv~D 147 (265)
T KOG3108|consen 142 IRPVED 147 (265)
T ss_pred eeeeec
Confidence 765543
No 174
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=79.49 E-value=11 Score=43.85 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCCEEEEEEEEEeeeec--CCceeEEEEEecCCCCceeEEEEeC-Ccccc-ccCCCCCcEEEEEeEEeCCCCCCcceeEE
Q 008405 46 AGRQVRVGGWVKTGREQ--GKGSFAFLEVNDGSCPANLQVIVDK-DVADL-GQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~--gk~~l~FidLrD~~~~~~iQvv~~~-~~~~~-~~~l~~gs~V~V~G~v~~~~~~~~~~lEl 121 (567)
.|+.|+|.|.|.+.+.. ++ ++.-+.+.|++|. ++++.-. +.. | .+.++.|..+.|.|++.... +.+++
T Consensus 58 ~g~~vtv~g~V~~~~~~~~~~-~~~~v~l~D~tg~--i~l~~F~~n~~-~~~~~l~~G~~~~v~Gkv~~~~----~~~qm 129 (681)
T PRK10917 58 PGEKVTVEGEVLSAEVVFGKR-RRLTVTVSDGTGN--LTLRFFNFNQP-YLKKQLKVGKRVAVYGKVKRGK----YGLEM 129 (681)
T ss_pred CCCEEEEEEEEEEEEEccCCc-eEEEEEEEECCeE--EEEEEEccCcH-HHHhhCCCCCEEEEEEEEEecC----CeEEE
Confidence 58999999999876433 33 4777888999864 8988763 222 4 45699999999999997633 34556
Q ss_pred EEeEEEE
Q 008405 122 RVQKVVD 128 (567)
Q Consensus 122 ~~~~i~v 128 (567)
.-.++.+
T Consensus 130 ~~P~~~~ 136 (681)
T PRK10917 130 VHPEYEV 136 (681)
T ss_pred EcCEEEe
Confidence 5555543
No 175
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=78.22 E-value=13 Score=35.44 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=37.2
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~ 131 (567)
+.|++..... .+.+.|+.|+-|.|+|.+....- | ....+||.+++|.+|+.
T Consensus 54 ~~Vv~fgk~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~ 110 (168)
T PRK06863 54 HRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGG 110 (168)
T ss_pred EEEEEEhHHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCC
Confidence 6666665432 24556999999999999987632 2 23468999999999875
No 176
>PRK08402 replication factor A; Reviewed
Probab=78.19 E-value=11 Score=40.20 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=58.0
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEee---e----ecCCc-eeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCC
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQGKG-SFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTG 99 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i---R----~~gk~-~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~g 99 (567)
-++|+||.. ..+.|.+.|+|.++ | +.|.. ++.=+.|.|.||. +.+++..+.. ++...+..|
T Consensus 62 ~~kI~dl~~--------g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~--ir~TlW~~~a~~~~~~l~~G 131 (355)
T PRK08402 62 LMHISDLVP--------GMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGR--ARVVLWDAKVAKYYNKINVG 131 (355)
T ss_pred ccCHHHccC--------CCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCe--EEEEEechhhhhhcccCCCC
Confidence 466777763 24689999999876 3 22321 2333889999975 8999887652 122358999
Q ss_pred cEEEEEeEEeCCCCCCcceeEEEEeEEEEe
Q 008405 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDV 129 (567)
Q Consensus 100 s~V~V~G~v~~~~~~~~~~lEl~~~~i~vl 129 (567)
++|.|.|-.++... .|.+||.+.+-..+
T Consensus 132 dvi~I~~a~V~e~~--~G~~eLsvg~~s~i 159 (355)
T PRK08402 132 DVIKVIDAQVRESL--SGLPELHINFRARI 159 (355)
T ss_pred CEEEEECCEEeecC--CCcEEEEECCCceE
Confidence 99999854444321 24668888655443
No 177
>PRK07211 replication factor A; Reviewed
Probab=74.67 E-value=17 Score=40.41 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=62.7
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEee---e----ecC-CceeEEEEEecCCCCceeEEEEeCCccccccCCCCC
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i---R----~~g-k~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~g 99 (567)
...+|++|.. .+..|.|.|+|.++ | +.| .+++.=+.|-|.+|. |.+.+..+..+....|..|
T Consensus 160 ~~~~I~dL~~--------~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~--IR~TlW~d~Ad~~~~le~G 229 (485)
T PRK07211 160 DTYTVEDLSL--------GLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGR--VRVTLWDDRADLAEELDAG 229 (485)
T ss_pred CCccHHHcCC--------CCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCe--EEEEEechhhhhhccCCCC
Confidence 3455666642 35679999999843 2 222 224666888999874 9999988764323568999
Q ss_pred cEEEEEe-EEeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 100 TCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 100 s~V~V~G-~v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
++|.|.| .|.... +.+||.+.+-..+.++.
T Consensus 230 ~Vv~I~~a~Vre~~----g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 230 ESVEIVDGYVRERD----GSLELHVGDRGAVEEVD 260 (485)
T ss_pred CEEEEEeeEEEecC----CcEEEEECCCceEEECC
Confidence 9999975 554433 68999998766666653
No 178
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=74.63 E-value=3.7 Score=44.84 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=33.8
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD----LKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d----~~~lm~~~E~li~~ 370 (567)
|.|++|+|||.|... .-+.-||+|+.+|.-..+ --+++.++-+.++.
T Consensus 101 r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 101 KRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred eEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 889999999999764 346789999999986643 23455555544443
No 179
>PRK07218 replication factor A; Provisional
Probab=74.29 E-value=20 Score=39.28 Aligned_cols=86 Identities=21% Similarity=0.124 Sum_probs=58.4
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeee-----ecC-CceeEEEEEecCCCCceeEEEEeCCccccccCCCCCc
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR-----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR-----~~g-k~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs 100 (567)
+.-++|+||.. .++.|.|.|+|-++- ..| .+.+.=+.|-|.||. |.+++..+. .|..||
T Consensus 56 ~~~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-----~l~~Gd 120 (423)
T PRK07218 56 PSSKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-----GLSPGD 120 (423)
T ss_pred CCCccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-----CCCCCC
Confidence 33556777763 357899999998772 112 125666777888864 888887743 389999
Q ss_pred EEEEEeEEeCCCCCCcceeEEEEeEEEEec
Q 008405 101 CVYVEGMLKNPPEGTKQKIELRVQKVVDVG 130 (567)
Q Consensus 101 ~V~V~G~v~~~~~~~~~~lEl~~~~i~vls 130 (567)
+|.+.+-..+.-. +.+||.+.+-.-+.
T Consensus 121 vv~I~na~vre~~---g~~el~ig~~t~I~ 147 (423)
T PRK07218 121 TVTIGNAGVREWD---GRPELNIGESTTVS 147 (423)
T ss_pred EEEEeccEeeccC---CceEEeccCcceEE
Confidence 9999986655542 56888875544443
No 180
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=73.95 E-value=8.6 Score=31.31 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.0
Q ss_pred EEEEEEEeeeecCCceeEEEEEe-cCCCCceeEEEEeCCccccccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVN-DGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLr-D~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~ 105 (567)
.|.|+|.++.++| +|+++. ++ +...+.++...+...+++|+.|.|.
T Consensus 7 ~v~g~V~si~d~G----~~v~~g~~g-----v~Gfl~~~~~~~~~~~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG----YILDIGIPG-----TTGFLPKKDAGNFSKLKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE----EEEEeCCCC-----cEEEEEHHHCCcccccCCCCEEEEE
Confidence 3899999999999 899993 22 5666776543333568899988776
No 181
>PRK06386 replication factor A; Reviewed
Probab=73.78 E-value=28 Score=37.28 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=54.1
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEee------eecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEE
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG------REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCV 102 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i------R~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V 102 (567)
.++|+||.. ...-|.|.|+|..+ ++.+++.+.=+.|.|.||. |.+++. ...+..|++|
T Consensus 107 ~~KI~DL~~--------g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGr--Ir~TlW------~~~l~eGd~v 170 (358)
T PRK06386 107 LVKIRDLSL--------VTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTAR--VRISSF------GKPLEDNRFV 170 (358)
T ss_pred ccEeEeccC--------CCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCe--EEEEEc------cccccCCCEE
Confidence 456766652 34567888888654 1111113444445555543 555544 4468999999
Q ss_pred EEEeEEeCCCCCCcceeEEEEeEEEEecCC
Q 008405 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 103 ~V~G~v~~~~~~~~~~lEl~~~~i~vls~~ 132 (567)
.+.+.+...- .|.+||.+.+...+.+.
T Consensus 171 ~i~na~v~e~---~G~~el~v~~~t~I~~~ 197 (358)
T PRK06386 171 RIENARVSQY---NGYIEISVGNKSVIKEV 197 (358)
T ss_pred EEeeeEEEcc---CCeEEEEeCCeEEEEEC
Confidence 9999776554 26899999988877664
No 182
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=73.76 E-value=14 Score=35.79 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=36.8
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
+-|++-.... .+.+.|+.|+-|.|+|.+..+.- | ....+||.+++|.+|+..
T Consensus 51 i~v~~fg~~AE~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 51 IDIRLFGRTAEIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred EEEEEEhHHHHHHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 5555554432 23456999999999999986532 2 234689999999999764
No 183
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.47 E-value=2.8 Score=45.83 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-+..+..|...+|+-+.+.||.||.||++-..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~t 48 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYT 48 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccch
Confidence 45789999999999999999999999998543
No 184
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.08 E-value=3.5 Score=44.55 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
...+--++++.--+|+.++||+-+.||.+...
T Consensus 184 ~a~LeqALi~yal~~l~~kGy~pl~~P~i~rk 215 (455)
T KOG2509|consen 184 GAFLEQALINYALDFLNAKGYTPLTTPDILRK 215 (455)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCchhhhH
Confidence 45677889999999999999999999998764
No 185
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=72.47 E-value=19 Score=34.19 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=37.5
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
|.|++..+.. .+.+.++.|+-|.|+|.+....- | +....||.+++|..|...
T Consensus 49 i~vv~wgk~Ae~~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHHHHHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 6677766542 24566899999999999986531 2 234579999999988753
No 186
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=71.52 E-value=4 Score=45.39 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=24.0
Q ss_pred cEEEEecccccCCCCCCC----CccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSR----HLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~r----HlpEFtmLE~e~a~~d 356 (567)
.|-|||++||||=+ +| -.-||+|+|+|. |.+
T Consensus 167 giaQIGk~FRNEIs--Pr~~l~R~REF~q~EiE~-Fv~ 201 (539)
T PRK14894 167 GIAQVGKAFRNEIN--PRNFLFRVREFEQMEIEY-FVM 201 (539)
T ss_pred eEEeeeccccCccC--CCCceeecccchhheEEE-EeC
Confidence 68999999999943 33 356999999986 544
No 187
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=69.99 E-value=2.1 Score=47.45 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhc--CCcEEEecCeeecC
Q 008405 167 RIRNALAYATHTFLQK--QGFLYIHTPIITTS 196 (567)
Q Consensus 167 r~Rs~i~~~iR~fl~~--~gF~EVeTPiL~~~ 196 (567)
.++..|+++.|++|-. .+++||+||+|++.
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~ 72 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILPE 72 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCcH
Confidence 5778899999999955 58999999999764
No 188
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=69.79 E-value=27 Score=33.14 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=36.1
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++..+.. ...+.|+.|+.|.|+|.+....- | ....+||.+++|.+++-.
T Consensus 45 i~v~awg~~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 45 CRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 5566554432 23456999999999999987631 2 234689999999998643
No 189
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=68.63 E-value=26 Score=33.57 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=36.6
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~ 131 (567)
+-|++-.+.. .+.+.|++|+-|.|+|.+..+.- | +...+||.|+.|.+|..
T Consensus 49 i~~v~wgk~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~ 105 (173)
T PRK06751 49 INCVIWRKQAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEP 105 (173)
T ss_pred EEEEEeCcHHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcC
Confidence 5666655442 24556999999999999987642 2 22457999999998874
No 190
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=67.92 E-value=34 Score=39.40 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCCCEEEEEEEEEee--e-ecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 44 GLAGRQVRVGGWVKTG--R-EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~i--R-~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
...|+.|++.|.|.+. + ..++ ++.=+.+.|+++ .|-+++-+...-..+.++.|..|.|.|+|.... +..+
T Consensus 57 ~~~g~~vti~g~V~~~~~~~~~~~-~~l~v~~~d~~~--~l~l~fFn~~~~l~~~~~~G~~v~v~Gk~~~~~----~~~~ 129 (677)
T COG1200 57 ARPGEIVTIEGTVLSHEKFPFGKR-KLLKVTLSDGTG--VLTLVFFNFPAYLKKKLKVGERVIVYGKVKRFK----GGLQ 129 (677)
T ss_pred cCCCceEEEEEEEEeeeccCCCCC-ceEEEEEecCcE--EEEEEEECccHHHHhhCCCCCEEEEEEEEeecc----CceE
Confidence 3468999999999555 4 3354 355567889765 477776554322345789999999999998755 4677
Q ss_pred EEEeEEEEec
Q 008405 121 LRVQKVVDVG 130 (567)
Q Consensus 121 l~~~~i~vls 130 (567)
+.-.++.+.+
T Consensus 130 ~~hpe~~~~~ 139 (677)
T COG1200 130 ITHPEYIVND 139 (677)
T ss_pred EEcceEEecC
Confidence 7666666654
No 191
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=67.85 E-value=8.1 Score=42.37 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=27.7
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|++|+|||+|.+...|- -||+|+++|.-+.+
T Consensus 104 R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~ 136 (430)
T CHL00201 104 RLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSI 136 (430)
T ss_pred EEEEEcceecCCCCcCCcc-ceeEEeceEEECCC
Confidence 9999999999998765665 49999999987654
No 192
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=66.85 E-value=35 Score=32.40 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=36.4
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++-.+..+ ....|+.|+.|.|+|.+....- | ....+||.++.|.+|+..
T Consensus 54 ~~Vv~fgk~Ae~v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 54 HRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred EEEEEehHHHHHHHHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 55565544322 3456999999999999987632 2 224689999999999753
No 193
>PRK07080 hypothetical protein; Validated
Probab=66.80 E-value=6.6 Score=41.03 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=35.9
Q ss_pred cEEEE-ecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 008405 323 NVYTF-GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI-~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l 371 (567)
++|.+ |.|||+|.+...+-+-||+|-|+=.. .+-+++.+.-+..+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHH
Confidence 66665 78999999887777789999998654 46677776666555543
No 194
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=66.50 E-value=14 Score=44.64 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=48.6
Q ss_pred CCCEEEEEEEEEeeeec---CCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCC
Q 008405 46 AGRQVRVGGWVKTGREQ---GKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~---gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~ 112 (567)
.++.|+|.|.|.++|.. |+ .++|+.|.|.++. +.+++-++.- .+. .+..++++.|+|+...+.
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~-~maf~~~eD~~~~--~e~~~F~~~~~~~~-~l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANK-EYKKVILSDDSVE--ITIFVNDNDYLLFE-TLKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCC-eEEEEEEEECCCc--EEEEEcHHHHHHHH-HhhcCCEEEEEEEEcCCC
Confidence 46789999999886543 55 5999999999875 9999876642 222 377889999999987665
No 195
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=66.33 E-value=8.4 Score=41.53 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=28.0
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|+|++|+|||+|.... .|.-||+|+++|....+
T Consensus 99 r~~y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 99 KLYYIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred EEEEEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 8999999999998743 45689999999987655
No 196
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=66.06 E-value=29 Score=39.99 Aligned_cols=74 Identities=20% Similarity=0.142 Sum_probs=49.8
Q ss_pred CCCEEEEEEEEEeeee--cCCceeEEEEEec-CCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEE
Q 008405 46 AGRQVRVGGWVKTGRE--QGKGSFAFLEVND-GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~--~gk~~l~FidLrD-~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~ 122 (567)
.|+.++|.|.|.+... .+++++.-+.+.| +++ .+.+++-+.. -..+.+..|+.|.|.|++.... +.+++.
T Consensus 31 ~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~F~~~-~~~~~~~~g~~~~~~Gk~~~~~----~~~~~~ 103 (630)
T TIGR00643 31 PGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYK--KLELRFFNRA-FLKKKFKVGSKVVVYGKVKSSK----FKAYLI 103 (630)
T ss_pred CCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCC--EEEEEEECCH-HHHhhCCCCCEEEEEEEEEeeC----CEEEEE
Confidence 5899999999875421 1211356677899 775 4999887632 1245689999999999997644 245554
Q ss_pred EeEE
Q 008405 123 VQKV 126 (567)
Q Consensus 123 ~~~i 126 (567)
-.++
T Consensus 104 ~p~~ 107 (630)
T TIGR00643 104 HPEF 107 (630)
T ss_pred CCEE
Confidence 4444
No 197
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=65.86 E-value=57 Score=32.53 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCEEEEEEEEEe---eee--cCCceeEEEEEe-cC----CCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCC---
Q 008405 47 GRQVRVGGWVKT---GRE--QGKGSFAFLEVN-DG----SCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--- 113 (567)
Q Consensus 47 g~~V~v~GwV~~---iR~--~gk~~l~FidLr-D~----~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~--- 113 (567)
-..|.|.|+|.+ +|. .|+ .++-+-|- +. +.+ |.|++......+...++.||-|.|.|.+....-
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~-~va~f~lAvnr~~~~td~--i~~v~wg~~Ae~~~~l~KG~~V~V~GrL~sr~y~~k 185 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGR-EIADLLLAVNRPYNKSDY--IPCIAWGRNARFCKTLEVGDNIRVWGRVQSREYQKK 185 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCC-EEEEEEEEEcCCCCCceE--EEEEEEhHHhHHHhhCCCCCEEEEEEEEEecceEcC
Confidence 457999999964 354 354 35555553 21 233 788887655444456999999999999987631
Q ss_pred -C-----CcceeEEEEeEEEEecCC
Q 008405 114 -G-----TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 114 -~-----~~~~lEl~~~~i~vls~~ 132 (567)
| +...+||.+++++.+++.
T Consensus 186 ~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 186 LSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred CCCccceEEEEEEEEEEEEEEcCCh
Confidence 1 123589999999999764
No 198
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.50 E-value=37 Score=32.11 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=36.2
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCC----CC-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++-.+.. .+.+.|+.|+.|.|+|.+.... .| ....+||.+++|..|...
T Consensus 53 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 53 HDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred EEEEEehHHHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 5566654432 2445799999999999998763 12 234689999999877653
No 199
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=65.32 E-value=8.4 Score=43.69 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=36.0
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~ 370 (567)
|+||||+||+.+.. +..|..|++++-+-.+. .|+.++...+|.++..
T Consensus 440 ~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 440 KIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred eEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 89999999998753 34577799999887766 3688887777777653
No 200
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=63.85 E-value=8.3 Score=41.54 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
..|.+.+++.|..+||.||+||++...
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~ 34 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPA 34 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccH
Confidence 378889999999999999999999653
No 201
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=62.18 E-value=39 Score=26.05 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=38.4
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~ 105 (567)
.+.|.|..++..| -.+.++|......+.|.+-++.+. . ...+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~~G--~~vRlEl~~~~~~~~iEvel~~~~-~-~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVG--PEVRLELKRLDDGEPIEVELPRER-R-QLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecC--CeEEEEEEECCCCCEEEEEeCHhH-H-hcCCCCCCEEEEE
Confidence 3788999999999 799999965522257999888765 1 2346669998775
No 202
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=61.89 E-value=57 Score=26.86 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=39.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCC------ceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEe
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCP------ANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQ 124 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~------~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~ 124 (567)
+|.|.|......+. .-.|. |+|..+. .-|=|...+ ...+.+||.|.|+|+|.+-. +..+|...
T Consensus 1 ~v~GvVTa~~~~~~-~~Gff-iQd~~~d~~~~ts~gifV~~~~-----~~~~~~Gd~V~vtG~v~ey~----g~tql~~~ 69 (78)
T cd04486 1 TVEGVVTAVFSGGG-LGGFY-IQDEDGDGDPATSEGIFVYTGS-----GADVAVGDLVRVTGTVTEYY----GLTQLTAV 69 (78)
T ss_pred CeEEEEEEEcCCCC-cCEEE-EEcCCCCCCCcccceEEEecCC-----CCCCCCCCEEEEEEEEEeeC----CeEEEccC
Confidence 37788888876531 12344 6665211 111111111 24588999999999998776 35566654
Q ss_pred E-EEEec
Q 008405 125 K-VVDVG 130 (567)
Q Consensus 125 ~-i~vls 130 (567)
+ +++++
T Consensus 70 ~~~~~~~ 76 (78)
T cd04486 70 SAIEVLG 76 (78)
T ss_pred CceEEec
Confidence 4 55554
No 203
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=61.51 E-value=9.1 Score=46.58 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=33.9
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD----LKDDMNCAEAYVKFMC 372 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d----~~~lm~~~E~li~~l~ 372 (567)
|-|+|++|||-+.. . |.-||+.|++-....+ -.+++.++-+++..++
T Consensus 1006 Kry~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l 1056 (1351)
T KOG1035|consen 1006 KRYCISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEIL 1056 (1351)
T ss_pred HHhhhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHh
Confidence 56999999999872 3 9999999998766533 2356666666665543
No 204
>PLN02734 glycyl-tRNA synthetase
Probab=60.76 E-value=3.3 Score=47.75 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhh-hcCCcEEEecCeeecC
Q 008405 167 RIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (567)
Q Consensus 167 r~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~~ 196 (567)
.+++.|++..|++| ...+.+||+||+|++.
T Consensus 110 ~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~ 140 (684)
T PLN02734 110 AVKSNVLAFWRQHFVLEENMLEVECPCVTPE 140 (684)
T ss_pred HHHHHHHHHHHHHHhccCCeeEeeccccCCH
Confidence 67899999999988 4567789999999865
No 205
>PRK07218 replication factor A; Provisional
Probab=60.44 E-value=84 Score=34.52 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCEEEEEEEEEee--e----ecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 47 GRQVRVGGWVKTG--R----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 47 g~~V~v~GwV~~i--R----~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
+..|.|.|+|..+ | +-|.+.+.=..|.|.||. |.+++..+. ..|..|++|.|.|-.++.-. |.+|
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~--Ir~tlW~~~----~~l~~Gd~v~I~na~v~e~~---G~~e 242 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETGR--LPFTDWDPL----PEIEIGASIRIEDAYVREFR---GVPS 242 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCce--EEEEEeccc----ccCCCCCEEEEeeeEEeccC---CeEE
Confidence 4558999999876 1 113223444567888864 888887753 24889999999997766653 6899
Q ss_pred EEEeEEEEecC
Q 008405 121 LRVQKVVDVGM 131 (567)
Q Consensus 121 l~~~~i~vls~ 131 (567)
|.+.+-..+..
T Consensus 243 lnv~~~t~I~~ 253 (423)
T PRK07218 243 VNVSEFTTVEA 253 (423)
T ss_pred EEECCceEEEE
Confidence 99986555544
No 206
>PRK02801 primosomal replication protein N; Provisional
Probab=60.29 E-value=23 Score=30.74 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=34.1
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeC--CCCCCcceeEEEEeEEEEe
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKN--PPEGTKQKIELRVQKVVDV 129 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~--~~~~~~~~lEl~~~~i~vl 129 (567)
|+||+..+..+ +.+.+..|+-|.|+|.+.. ++.| ...+.|++++++.+
T Consensus 50 i~~va~G~~Ae~~~~~l~kGs~v~V~G~L~~~~~~~g-~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQFQAITQSITVGSKITVQGFISCHQGRNG-LSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHHHHHHhhcCCCCEEEEEEEEEEeECCCC-CEEEEEEEEEEEEC
Confidence 78888765433 3456999999999999986 2222 23366899888765
No 207
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=60.03 E-value=47 Score=31.94 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=34.9
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC---C-CcceeEEEEe---EEEEecCC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQ---KVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~---~-~~~~lEl~~~---~i~vls~~ 132 (567)
+-|++-.+.. .+...|+.|+.|.|+|.+....- | .....||.++ ++.+|++.
T Consensus 56 ~~Vv~wgk~Ae~v~~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~ 115 (175)
T PRK13732 56 HRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115 (175)
T ss_pred EEEEEecHHHHHHHHhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCC
Confidence 4455544332 23456999999999999876521 2 2345788888 88888765
No 208
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=58.37 E-value=3 Score=47.07 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhh-hcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~~ 196 (567)
.+++..|.+.+|++| ...+++||+||+|++.
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 378889999999998 5778999999999864
No 209
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=55.33 E-value=21 Score=29.95 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=34.9
Q ss_pred eeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCC-----CcceeEEEEeEEEEe
Q 008405 80 NLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEG-----TKQKIELRVQKVVDV 129 (567)
Q Consensus 80 ~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~-----~~~~lEl~~~~i~vl 129 (567)
-++|.+..+.. .+.+.++.||.|.|+|.+....-. ....+++.+++|.++
T Consensus 45 ~~~v~~~g~~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 45 WIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEhHHHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 47777766532 244569999999999999876421 235578888877653
No 210
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=54.32 E-value=13 Score=40.27 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCeeecCC
Q 008405 167 RIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (567)
Q Consensus 167 r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~ 197 (567)
+....|.+.+++.|...||..|+||+|...+
T Consensus 18 ~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d 48 (390)
T COG3705 18 RRKEEIRDQLLALFRAWGYERVETPTLEPAD 48 (390)
T ss_pred hhHHHHHHHHHHHHHHhCCccccccccchhh
Confidence 5567788889999999999999999998754
No 211
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=51.55 E-value=90 Score=29.43 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=59.5
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEE--eeeecCCc-eeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEe
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVK--TGREQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~--~iR~~gk~-~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G 106 (567)
.+..++.. +....++.++|.|.|. ++.+.+.+ .+.| .|.|+.. .|.|..+.-.+ ..++.|.-|-++|
T Consensus 38 ~tpsEv~~----~~~~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilP---DlFrEGqgVVaeG 107 (155)
T PRK13159 38 FTPSQVRA----GAAAGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNA--ATQVEYTGILP---DLFRDNQSVIANG 107 (155)
T ss_pred ECHHHHhc----CCcccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCc--EEEEEEccCCC---ccccCCCeEEEEE
Confidence 34555653 2334679999999997 88776542 2576 6789864 58888776543 3578899999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEecCCCCCCC
Q 008405 107 MLKNPPEGTKQKIELRVQKVVDVGMVDPAKY 137 (567)
Q Consensus 107 ~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~ 137 (567)
.+. . + ..+++ +||.+|+ ..|
T Consensus 108 ~~~--~----g--~F~A~--~vLAKHd-e~Y 127 (155)
T PRK13159 108 RMQ--G----G--RFVAN--EVLAKHD-ETY 127 (155)
T ss_pred EEc--C----C--EEEEe--EEEecCC-CcC
Confidence 985 2 1 34454 7899987 455
No 212
>PRK00036 primosomal replication protein N; Reviewed
Probab=51.39 E-value=38 Score=29.91 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=38.2
Q ss_pred eeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecC
Q 008405 80 NLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 80 ~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~ 131 (567)
.||+|+..........++.|+.|.|+|.+..+.. ....+=|+++.|+.+.+
T Consensus 48 ~i~ava~G~~a~~~~~l~~Gs~v~v~GFLa~~~~-~~~~LVLHi~~Ie~i~~ 98 (107)
T PRK00036 48 TISAVALGDLALLLADTPLGTEMQVQGFLAPARK-DSVKVKLHLQQARRIAG 98 (107)
T ss_pred EEEEEEEhhHHHHhcccCCCCEEEEEEEEEECCC-CCCcEEEEhHHeEEccc
Confidence 3788887754333456999999999999986443 34678899999988854
No 213
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=49.76 E-value=34 Score=30.05 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=36.2
Q ss_pred eEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++-.+. +.+.+.+..||-|.|+|.+....- | .....||.++++.+|+..
T Consensus 49 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 49 INCVVWRKSAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEehHHHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 445554433 224556899999999999987632 2 224589999999999753
No 214
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=49.60 E-value=87 Score=29.29 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=48.3
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEe-cC------CC-----CceeEEEEeCC-c-cccccCCCCCcEEEEEeEEe
Q 008405 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN-DG------SC-----PANLQVIVDKD-V-ADLGQLVPTGTCVYVEGMLK 109 (567)
Q Consensus 48 ~~V~v~GwV~~---iR~~gk~-~l~FidLr-D~------~~-----~~~iQvv~~~~-~-~~~~~~l~~gs~V~V~G~v~ 109 (567)
..|.|.|||.+ +|...++ .++=+.|- +. .| ..=+.|++-.+ . ..+.+.|+.|+.|.|+|.+.
T Consensus 6 N~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~~Ae~~~~~l~KG~~V~V~GrL~ 85 (152)
T PRK06642 6 NKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQ 85 (152)
T ss_pred eEEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChHHHHHHHHhCCCCCEEEEEEEEE
Confidence 46788888876 5543321 13333332 11 01 11266666553 2 22345699999999999998
Q ss_pred CCCC----C-CcceeEEEEeEE----EEecC
Q 008405 110 NPPE----G-TKQKIELRVQKV----VDVGM 131 (567)
Q Consensus 110 ~~~~----~-~~~~lEl~~~~i----~vls~ 131 (567)
...- | .....||.++++ ..|+.
T Consensus 86 ~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~ 116 (152)
T PRK06642 86 TRKWNDNSGQEKYTTEVVLQNFNSQLILLDS 116 (152)
T ss_pred eCeeECCCCCEEEEEEEEEEecccceEeccC
Confidence 7632 2 224578888876 56653
No 215
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=49.08 E-value=1.1e+02 Score=38.94 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=53.3
Q ss_pred CCCEEEEEEEEEee--e--ecCCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCcceeE
Q 008405 46 AGRQVRVGGWVKTG--R--EQGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (567)
Q Consensus 46 ~g~~V~v~GwV~~i--R--~~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lE 120 (567)
.+..|+|.|.|-.+ | +.|+ .+.=+.|.|.++.-.+...++.+. ......++.|+.|.|+|.+....- .+++.
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~-~~~~~~~td~~~s~~~k~f~~~~~~~~~~~~~~~g~~v~~~g~~~~d~~--~~~~~ 311 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGR-HILTFKITDYTSSIIVKKFSRDKEDLKKFDEIKKGDWVKVRGSVQNDTF--TRDLV 311 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCC-EEEEEEEEcCCCCEEEEEEecCcchhHHHhcCCCCCEEEEEEEEeccCC--CCceE
Confidence 35689999999655 3 2343 354578899886533444443221 123356899999999999987663 35777
Q ss_pred EEEeEEEEec
Q 008405 121 LRVQKVVDVG 130 (567)
Q Consensus 121 l~~~~i~vls 130 (567)
+.+..+..+.
T Consensus 312 ~~~~~~~~~~ 321 (1437)
T PRK00448 312 MNAQDINEIK 321 (1437)
T ss_pred EEeeeeeecC
Confidence 7777776543
No 216
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=47.52 E-value=69 Score=25.87 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc---------ccccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---------DLGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~---------~~~~~l~~gs~V~V~ 105 (567)
.|.|.|.++...| +|++|..+ +...+..... ++.+.++.|+.|.++
T Consensus 6 ~V~g~V~~i~~~G----~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG----VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc----EEEEeCCC-----CEEEEEHHHccCccccChhhHhcccCCCCEEEEE
Confidence 4789999998877 99999643 5555552211 123457888888765
No 217
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=47.12 E-value=1.1e+02 Score=27.61 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=39.4
Q ss_pred CCEEEEEEEEEeeeecCCceeEEE-EE----ecCC---CCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCC
Q 008405 47 GRQVRVGGWVKTGREQGKGSFAFL-EV----NDGS---CPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 47 g~~V~v~GwV~~iR~~gk~~l~Fi-dL----rD~~---~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~ 112 (567)
++.+++.|.|........+...|. .+ ..+. ...+|++..+++.. ..+..||.|.++|++...+
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~Gd~i~~~g~l~~~~ 145 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ---PRLQPGDRIRVRGKLKPPS 145 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc---cccCCCCEEEEEEEEecCC
Confidence 788999999977744443223232 21 1111 12456666666542 2578999999999998765
No 218
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=46.06 E-value=27 Score=33.83 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=37.3
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++..+.. .+.+.|++|+.|.|+|.+....- + +...+||.+++|.+|+..
T Consensus 54 ~~V~~fGk~AE~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 54 HRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 6666655432 23456999999999999987632 2 335689999999999753
No 219
>PLN02972 Histidyl-tRNA synthetase
Probab=45.26 E-value=17 Score=42.64 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=33.3
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccC-CH----HHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DL----KDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d~----~~lm~~~E~li~~ 370 (567)
|.|+||+|||.|... .-+.-||+|+.+|..+. +. -|++.++-+.++.
T Consensus 419 KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 419 KRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred eEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 788999999999874 33567999999999874 21 2455555554443
No 220
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.74 E-value=40 Score=41.21 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=30.0
Q ss_pred CCCEEEEEEEEEeeeec-----CCceeEEEEEecCCCCceeEEEE
Q 008405 46 AGRQVRVGGWVKTGREQ-----GKGSFAFLEVNDGSCPANLQVIV 85 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~-----gk~~l~FidLrD~~~~~~iQvv~ 85 (567)
.|.+|++.|.|.++|.. |+ .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~-~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGK-PMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCC-EEEEEEEEECCCc--EEEEe
Confidence 46789999999877653 33 4999999999976 88886
No 221
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=44.27 E-value=18 Score=36.73 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=39.2
Q ss_pred cceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008405 475 LKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRD 554 (567)
Q Consensus 475 ~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrd 554 (567)
+.+.-.+|+-+ +|.||. +-.-|++. .|++ --|.++=+--|+|||.|.|-|.+||-|
T Consensus 119 GAwGlGWEVWl-dGMEIT----QfTYFQQv------GGi~-------------~~pv~~EITYGLERiamylQ~vdnv~d 174 (284)
T PF02091_consen 119 GAWGLGWEVWL-DGMEIT----QFTYFQQV------GGID-------------CKPVSVEITYGLERIAMYLQGVDNVYD 174 (284)
T ss_dssp TEEEEEEEEEE-TTCEEE----EEEEEEEE------TTEE--------------SS--EEEEEEHHHHHHHHCT-SSGGG
T ss_pred cccccccEEEE-CCEEEE----Eeeeeeee------CCcc-------------ccccceehhhhHHHHHHHHhCCCeeEe
Confidence 45677899999 578985 22222211 2332 136778899999999999999999999
Q ss_pred ccc
Q 008405 555 VIP 557 (567)
Q Consensus 555 vi~ 557 (567)
++.
T Consensus 175 l~w 177 (284)
T PF02091_consen 175 LIW 177 (284)
T ss_dssp SEE
T ss_pred eee
Confidence 864
No 222
>PRK04036 DNA polymerase II small subunit; Validated
Probab=43.33 E-value=88 Score=35.13 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=44.8
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc---ccCCCCCcEEEEEeEEe
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL---GQLVPTGTCVYVEGMLK 109 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~---~~~l~~gs~V~V~G~v~ 109 (567)
.++++.|-|-|..+|..+++ -..+.|.|.+|. |++++.++..++ ...+-.|.+|.|.|++.
T Consensus 152 ~~~~~~viG~v~~~~~~~~g-~~~~~LED~sgr--v~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~ 215 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNG-HKIVELEDTTGT--FPVLIMKDREDLAELADELLLDEVIGVEGTLS 215 (504)
T ss_pred CCceEEEEEEEEEeecccCC-ceEEEEECCCCe--EEEEeecchhhhhhhhhcccCceEEEEEEEEc
Confidence 57889999999999865432 224679999975 999986653222 23467899999999874
No 223
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=42.65 E-value=17 Score=35.96 Aligned_cols=25 Identities=36% Similarity=0.682 Sum_probs=22.0
Q ss_pred CcceeeecHHHHHHHHcCCCCcccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
|...+.|++|+|+|+..|.++||..
T Consensus 188 ~v~~~Eidl~~l~~~~~~~~~~~~~ 212 (218)
T cd00496 188 SGFAFGIGLERLAMLKYGIPDIRLF 212 (218)
T ss_pred eEEEEEecHHHHHHHHhCCcHHHHH
Confidence 4568899999999999999999963
No 224
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=42.59 E-value=26 Score=39.28 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=33.4
Q ss_pred cEEEEecccccCCCCCCCCccccccceeee--ccCCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEM--AFSDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~--a~~d~~~lm~~~E~li~~l 371 (567)
|+||||+|||.+.....+|+..+.+..+-. .-.|+.++...++.|++.+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 999999999886321345776666654212 1247888888888888654
No 225
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=42.46 E-value=26 Score=29.71 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=30.0
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC----CC-CcceeEEEEeEEEEe
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDV 129 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl~~~~i~vl 129 (567)
++|++..+..+ +.+.++.||.|.|+|.+.... .| ....++|.+++|.+|
T Consensus 50 ~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 56665544322 334589999999999987643 12 235689999998875
No 226
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=42.15 E-value=17 Score=37.60 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=30.7
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC-HHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d-~~~lm~~~E~li~~ 370 (567)
|.|++|+|||.|. .||+|+.+|.-+.+ ..+++.++-+.++.
T Consensus 97 r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 97 KWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred eEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 8999999999874 49999999998764 55555554444443
No 227
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.85 E-value=6.1 Score=43.22 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhh-hcCCcEEEecCeeecC
Q 008405 167 RIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (567)
Q Consensus 167 r~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~~ 196 (567)
.+++.|++..|++| .+.+-+||+.|+|++-
T Consensus 47 alk~Nil~~WRkhFilEE~MlEvdct~ltP~ 77 (599)
T KOG2298|consen 47 ALKSNILSLWRKHFILEEDMLEVDCTMLTPE 77 (599)
T ss_pred hhHHhHHHHHHHHHhhhhcceeeccCcCCcH
Confidence 57889999999998 7789999999999864
No 228
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=41.29 E-value=92 Score=29.43 Aligned_cols=84 Identities=23% Similarity=0.210 Sum_probs=50.9
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEe----cCCCCceeEEEEeCCcc-------ccc--
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVN----DGSCPANLQVIVDKDVA-------DLG-- 93 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLr----D~~~~~~iQvv~~~~~~-------~~~-- 93 (567)
...++.+++.. ....+.|+.|+..|.|-++++.. +-+.|.|- |.++. =|.- +.+.. .|.
T Consensus 17 ~~~~~~~~v~~---~p~~~~G~~VrwGG~I~~v~n~~--~~T~leV~~~PLd~~gr--P~~~-~~s~GRFla~~~gFLDP 88 (160)
T PF03843_consen 17 DPQPSFSQVRA---NPDAYQGQQVRWGGVIVNVRNLP--DQTELEVVQYPLDSSGR--PQTD-DPSQGRFLARVPGFLDP 88 (160)
T ss_pred CccCCHHHHHh---ChhhcCCCEEEECCEEEEEEECC--CceEEEEEEccCCCCCC--cCCC-CCCCCEEEEEeCCCcCH
Confidence 33455666663 34568899999999999999988 45666664 22221 0000 00000 121
Q ss_pred cCCCCCcEEEEEeEEeCCCCCCcce
Q 008405 94 QLVPTGTCVYVEGMLKNPPEGTKQK 118 (567)
Q Consensus 94 ~~l~~gs~V~V~G~v~~~~~~~~~~ 118 (567)
.....|-.|.|.|++.....+.-++
T Consensus 89 ~~y~~Gr~vTV~G~v~g~~~~~ige 113 (160)
T PF03843_consen 89 AIYAPGRLVTVVGTVTGMETGKIGE 113 (160)
T ss_pred HHcCCCCEEEEEEEecceEEeeeCC
Confidence 2357899999999998776443334
No 229
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=41.15 E-value=98 Score=24.43 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=32.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
.+.|.|.++...| +|++|.+..+ +...+..+... ....++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g----~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG----AYVSLLEYGN---IEGMILLSELSRRRIRSIRKLVKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE----EEEEEcCCCC---eEEEEEhHHcCCcccCCHHHeeCCCCEEEEE
Confidence 3689999999877 8999976432 45666544311 12347889998875
No 230
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.81 E-value=71 Score=24.88 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=31.2
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c----cccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~----~~~~l~~gs~V~V~ 105 (567)
.+.|+|.++...| +|+.|.++ +...+..... + ....++.||.|.|.
T Consensus 3 ~v~g~V~~v~~~G----v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG----VFVTLGRG-----VDARVRVSELSDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc----EEEEeCCC-----CEEEEEHHHCCchhhcCHhhccCCCCEEEEE
Confidence 3789999999877 89999753 4555554321 1 22347888888775
No 231
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=40.66 E-value=1.1e+02 Score=33.51 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=49.8
Q ss_pred CCEEEEEEEEE--eeeecCCceeEEEEEecCCCCceeEEEEeCCccc---cccCCCCCcEEEEEeEEeCCCCCCcceeEE
Q 008405 47 GRQVRVGGWVK--TGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (567)
Q Consensus 47 g~~V~v~GwV~--~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~---~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl 121 (567)
...++|.|.|. .+..-| +..|+.+.|+.| .|-++.-....+ ....|..||.|.+.|.++.. . |
T Consensus 266 ~~~~~v~g~v~~~p~~ieG--ghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~------~--~ 333 (421)
T COG1571 266 YSKYRVVGRVEAEPRAIEG--GHVVVEITDGEG--EIGAVAFEPTKEFRELARKLIPGDEITVYGSVKPG------T--L 333 (421)
T ss_pred ccceEEEEEEecccEEeeC--CEEEEEecCCCc--eEEEEEecccccchHHHHhcCCCCEEEEecCcccc------c--e
Confidence 34578888874 345566 699999999987 377777543322 34578999999999998532 2 6
Q ss_pred EEeEEEEec
Q 008405 122 RVQKVVDVG 130 (567)
Q Consensus 122 ~~~~i~vls 130 (567)
-+++++++.
T Consensus 334 n~ek~~v~~ 342 (421)
T COG1571 334 NLEKFQVLK 342 (421)
T ss_pred eEEEEEEEE
Confidence 666666543
No 232
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=40.36 E-value=2.9e+02 Score=25.14 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=57.6
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEee----eecCCceeEEEEEecCCCC--ceeEEEEeCCccccccCCCCCcEEE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG----REQGKGSFAFLEVNDGSCP--ANLQVIVDKDVADLGQLVPTGTCVY 103 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i----R~~gk~~l~FidLrD~~~~--~~iQvv~~~~~~~~~~~l~~gs~V~ 103 (567)
+.|+++.+ ..|+.|-|-|=|... |..|+.-.+-+.|.|.++. ..|.|.+-....+....+..||+|.
T Consensus 4 ~~i~~~~~-------~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDVIl 76 (138)
T cd04497 4 TPLSSALK-------ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDIIL 76 (138)
T ss_pred EeHHHHHh-------ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCChhhCCCCCCCCEEE
Confidence 55666652 467788888888664 3344434666788898762 4677777655422223358999999
Q ss_pred EEeEEeCCCCCCcceeEEE-EeEEEEecCC
Q 008405 104 VEGMLKNPPEGTKQKIELR-VQKVVDVGMV 132 (567)
Q Consensus 104 V~G~v~~~~~~~~~~lEl~-~~~i~vls~~ 132 (567)
+.+.-...-.|....+.-. .+++-|....
T Consensus 77 l~~~kv~~~~g~~~~~~~~~~ss~avf~~~ 106 (138)
T cd04497 77 LRRVKIQSYNGKPQGISNDRGSSWAVFRGD 106 (138)
T ss_pred EEEEEEEEECCceEEEECCCceeEEEEcCC
Confidence 9996555543322222222 4456666654
No 233
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=39.55 E-value=70 Score=24.92 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=32.0
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
+.|+|.++.+.| +|+.|.++ ++..+..+... ....++.|+.|.|.
T Consensus 4 ~~g~V~~v~~~G----~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 4 THGTIVKVKPNG----CIVSFYNN-----VKGFLPKSELSEAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEecCc----EEEEECCC-----CEEEEEHHHcChhhcCCHHHcccCCCEEEEE
Confidence 789999998877 89999542 67777654321 12347888888876
No 234
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=38.66 E-value=22 Score=35.98 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=41.1
Q ss_pred ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008405 476 KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 476 ~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
.+...+|+-+ +|.||. +-.-|++. .|++ --|..+=+--|+|||.|.|-|.+||-|+
T Consensus 121 AwGLGWEVWl-dGMEIT----QFTYFQQv------GGi~-------------~~pv~~EiTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 121 AWGLGWEVWL-DGMEVT----QFTYFQQV------GGIP-------------CKPISVEITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred ccccccEEEE-CCeeee----eeeeeeee------CCee-------------ccccceeeehhHHHHHHHHhCCCceecc
Confidence 4556799999 578985 22222221 3343 1367788999999999999999999887
Q ss_pred cc
Q 008405 556 IP 557 (567)
Q Consensus 556 i~ 557 (567)
..
T Consensus 177 ~w 178 (279)
T cd00733 177 EW 178 (279)
T ss_pred cc
Confidence 54
No 235
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=38.53 E-value=28 Score=37.61 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.3
Q ss_pred CcEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
-|+|++|+|||+|.+. ..|.-||+|+++|.-..+
T Consensus 99 ~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 99 FKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred eEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 3999999999999874 456789999999986654
No 236
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=38.42 E-value=22 Score=36.03 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=41.3
Q ss_pred ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008405 476 KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 476 ~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
.+...+|+-+ +|.||. +-.-|++. .|++ --|..+=+--|+|||.|.|-|.+||-|+
T Consensus 125 AwGlGWEVWl-dGMEIT----QFTYFQQv------GGi~-------------~~pv~~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 125 AWGLGWEVWL-DGMEVT----QFTYFQQV------GGIE-------------CKPVTGEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred ccccceEEEE-CCeeee----eeeeeeee------CCee-------------ccccceeeehhHHHHHHHHhCCCceeee
Confidence 4556799999 578985 22222221 3343 1367788999999999999999999988
Q ss_pred cc
Q 008405 556 IP 557 (567)
Q Consensus 556 i~ 557 (567)
..
T Consensus 181 ~w 182 (283)
T PRK09348 181 VW 182 (283)
T ss_pred ec
Confidence 64
No 237
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=37.94 E-value=1.9e+02 Score=27.72 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=34.5
Q ss_pred eEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCC---C-CcceeEEEEe---EEEEecC
Q 008405 81 LQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQ---KVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~---~-~~~~lEl~~~---~i~vls~ 131 (567)
+-|++-.+. +.+.+.|+.|+-|.|+|.+....- | ....+||.++ .+.+|+.
T Consensus 55 ~~Vv~fgk~Ae~v~~~l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~ 113 (172)
T PRK05733 55 HRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGG 113 (172)
T ss_pred EEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcC
Confidence 555655443 224456999999999999877642 2 2245788888 7888863
No 238
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=37.21 E-value=3.5e+02 Score=25.20 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEEEEEeeeecCCceeEEEEEecCC-CC--------ceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCC
Q 008405 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGS-CP--------ANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE 113 (567)
Q Consensus 43 ~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~-~~--------~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~ 113 (567)
.+..|+.|+|.|+|.-.-..+.+---|+-+.+.. |. +.|.|...+.. ..-..-+.|.|+|++.....
T Consensus 51 ~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~~----~~~~~~~pv~V~G~l~~~~~ 126 (146)
T PF11736_consen 51 KALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKPI----PVDSLYDPVWVEGTLKVERS 126 (146)
T ss_pred HHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCCc----cccccceeEEEEEEEEeccc
Confidence 4567999999999999876543223677776632 11 12222222221 11123578999999987653
Q ss_pred C---CcceeEEEEeEEE
Q 008405 114 G---TKQKIELRVQKVV 127 (567)
Q Consensus 114 ~---~~~~lEl~~~~i~ 127 (567)
. ....+.+.+.+|+
T Consensus 127 ~~~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 127 SSDLGTSGYSMDADSVE 143 (146)
T ss_pred cchheeEEEEEEeeEEE
Confidence 2 1233455555543
No 239
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=37.05 E-value=1.1e+02 Score=30.88 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCcEEEEecccccC----CCCCCCCccccccceeeeccCCH--HHHHHHHHHHHHH
Q 008405 321 VSNVYTFGPTFRAE----HSHTSRHLAEFWMVEPEMAFSDL--KDDMNCAEAYVKF 370 (567)
Q Consensus 321 ~~rVFeI~~~FR~E----~~~t~rHlpEFtmLE~e~a~~d~--~~lm~~~E~li~~ 370 (567)
..|+-..-+|.|.- -..|.||..=|.||= -.+|.|| ++.|..+=+++..
T Consensus 55 ~~r~~~~QkCiR~~DienVG~t~rHhTfFEMLG-NfSFgdYFK~eaI~~awe~LT~ 109 (232)
T cd00673 55 ANRLVNSQKCIRAGDIDNVGKTGRHHTFFEMLG-NFSFGDYFKEEAIAFAWELLTE 109 (232)
T ss_pred CCceeeeeeceecCChhhccccccchhhhhhhc-ccchhhhhHHHHHHHHHHHHHh
Confidence 56888888999963 224789998888884 3456664 5566655555544
No 240
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=36.17 E-value=56 Score=31.57 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 171 ALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 171 ~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 34567899999999999999999765
No 241
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=34.88 E-value=85 Score=26.35 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=30.9
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc---------ccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL---------GQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~---------~~~l~~gs~V~V~ 105 (567)
.+.|.|.++-..- .-+|++|.++ ....+..+...+ ...++.||.|.|.
T Consensus 10 iy~g~V~~i~~~~--~GaFV~l~~g-----~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~Vq 66 (88)
T cd04453 10 IYLGRVKKIVPGL--QAAFVDIGLG-----KNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQ 66 (88)
T ss_pred EEEEEEEEeccCC--cEEEEEeCCC-----CEEEEEhHHcCchhccccCCHHHcCCCCCEEEEE
Confidence 4689999998752 1399999764 244455433211 3357888888775
No 242
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=34.78 E-value=38 Score=37.99 Aligned_cols=35 Identities=26% Similarity=0.550 Sum_probs=27.2
Q ss_pred CCC-CcceeeecHHHHHHHHcCCCCcccc--ccccCCC
Q 008405 528 GTV-KHSGFGLGFERMILFATGIDNIRDV--IPFPRYP 562 (567)
Q Consensus 528 G~P-P~gG~GiGiDRLlMll~g~~nIrdv--i~FPr~~ 562 (567)
|.+ |...|+|++|||+|...+.++||.. -.||+.|
T Consensus 313 DI~~pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 313 GIDVPVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred CCCCceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 443 5678999999999999998899984 3555555
No 243
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=33.41 E-value=2.9e+02 Score=34.68 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=52.3
Q ss_pred CCCEEEEEEEEEee--e--ecCCceeEEEEEecCCCCceeEEEEe--CCc-cccccCCCCCcEEEEEeEEeCCCCCCcce
Q 008405 46 AGRQVRVGGWVKTG--R--EQGKGSFAFLEVNDGSCPANLQVIVD--KDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQK 118 (567)
Q Consensus 46 ~g~~V~v~GwV~~i--R--~~gk~~l~FidLrD~~~~~~iQvv~~--~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~ 118 (567)
....|+|.|.|-.+ | +.|+ .+.-+.|.|.++. |.|..- .+. ......++.|+.|.|+|.+....- .++
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~d~~~s--~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~--~~~ 80 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGR-TLLKIKVTDYTDS--LILKKFLKSEEDPEKFDGIKIGKWVRARGKIELDNF--SRD 80 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCC-EEEEEEEEcCCCC--EEEEEecccccchHHHhhcCCCcEEEEEEEEeccCC--CCc
Confidence 34679999998544 2 2454 3666889998764 555432 221 112245899999999999987653 257
Q ss_pred eEEEEeEEEEe
Q 008405 119 IELRVQKVVDV 129 (567)
Q Consensus 119 lEl~~~~i~vl 129 (567)
+.+.+.++..+
T Consensus 81 ~~~~~~~~~~~ 91 (1213)
T TIGR01405 81 LQMIIKDIEEI 91 (1213)
T ss_pred eEEEeeeeeec
Confidence 77777777654
No 244
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=31.58 E-value=31 Score=35.17 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008405 476 KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 476 ~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
.+.-.+|+-+ +|.||. +-.-|++. .|++ --|..+=+--|+|||.|.|-|.+||-|.
T Consensus 122 AwGlGWEVWl-dGMEIT----QFTYFQQv------GGi~-------------~~pv~~EITYGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 122 AWGLGWEVWL-DGMEVT----QFTYFQQV------GGLE-------------CKPVSVEITYGLERLAMYIQGVENVYDL 177 (293)
T ss_pred ccccccEEEE-CCeeee----eeeeeeee------CCee-------------ccccceeeehhHHHHHHHHhCCCeeeee
Confidence 4556799999 578985 22222221 3343 1366678899999999999999999988
Q ss_pred cccc
Q 008405 556 IPFP 559 (567)
Q Consensus 556 i~FP 559 (567)
..=.
T Consensus 178 ~w~~ 181 (293)
T TIGR00388 178 EWSD 181 (293)
T ss_pred eecC
Confidence 7543
No 245
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=31.22 E-value=2.6e+02 Score=26.67 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=32.0
Q ss_pred eEEEEeCC-c-cccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEE----EEecC
Q 008405 81 LQVIVDKD-V-ADLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKV----VDVGM 131 (567)
Q Consensus 81 iQvv~~~~-~-~~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i----~vls~ 131 (567)
+.|++-.+ . ..+.+.|+.|+.|.|+|.+..+.- | ....+||.+++| +.|++
T Consensus 55 ~~Vv~fg~~~Ae~~~~~LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~ 116 (166)
T PRK06341 55 HRVVIFNEGLCKVAEQYLKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDG 116 (166)
T ss_pred EEEEEeChHHHHHHHHhcCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEccc
Confidence 45665543 2 223456999999999999876531 2 234578887654 55553
No 246
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=31.13 E-value=1.2e+02 Score=23.82 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=30.5
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c----cccCCCCCcEEEEE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~----~~~~l~~gs~V~V~ 105 (567)
+.|+|.++...| +|++|.+. .+..++..+.. + ....++.||.|.|.
T Consensus 6 v~g~V~~i~~~g----~~v~l~~~----~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~ 57 (77)
T cd05708 6 IDGTVRRVEDYG----VFIDIDGT----NVSGLCHKSEISDNRVADASKLFRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEcce----EEEEECCC----CeEEEEEHHHCCCCccCCHhHeecCCCEEEEE
Confidence 789999998877 89999752 14555543321 1 12346889988875
No 247
>COG3689 Predicted membrane protein [Function unknown]
Probab=30.32 E-value=2.6e+02 Score=28.72 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc----c--ccCCCCCcEEEEEeEEeCCCCC-
Q 008405 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----L--GQLVPTGTCVYVEGMLKNPPEG- 114 (567)
Q Consensus 42 ~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~----~--~~~l~~gs~V~V~G~v~~~~~~- 114 (567)
..++.|++|.+.|.|-+=-..++ |-.| ..|= |. +=|+++...-. . ...++..++|.|+|++...--.
T Consensus 170 pdef~Gk~Ie~tGFVy~~~~~~~-N~lf-laRF--gi--icC~ADa~vygl~v~~~~~~~y~ndtWltvkGtl~~e~~~~ 243 (271)
T COG3689 170 PDEFAGKKIEFTGFVYNDESFPK-NYLF-LARF--GI--ICCAADAGVYGLLVELDNQTDYKNDTWLTVKGTLSSEYLSD 243 (271)
T ss_pred chhhcCceEEEEEEEECCCCCCc-ceee-hhhh--he--eeeeccceeEEEEEEccccccCCCCceEEEEeEEEeeecCc
Confidence 46789999999999988556664 3444 3342 22 45555543210 1 1357899999999998765322
Q ss_pred -CcceeEEEEeEEEEecCCC
Q 008405 115 -TKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 115 -~~~~lEl~~~~i~vls~~~ 133 (567)
.+.-.-|++++++++.+++
T Consensus 244 ~~~~ipvi~v~sv~~I~kP~ 263 (271)
T COG3689 244 FKKRIPVIEVDSVEVIPKPA 263 (271)
T ss_pred hhhcCcEEEeeeeeecCCCC
Confidence 2455789999999987653
No 248
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=30.28 E-value=1.7e+02 Score=22.23 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--cc----ccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DL----GQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~~----~~~l~~gs~V~V~ 105 (567)
.+.|.|..+...| +|++|.++ +...+..... ++ ...++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G----~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG----AFVEILPG-----KDGLVHISELSDERVEKVEDVLKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE----EEEEeCCC-----CEEEEEhHHcCCccccCHHHccCCCCEEEEE
Confidence 3689999999987 89999653 4555554321 11 1236788888775
No 249
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=30.14 E-value=94 Score=28.19 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=35.0
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC---C-CcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~---~-~~~~lEl~~~~i~vls~ 131 (567)
+-|++-.... .+.+.|+.|+.|.|+|.+....- | ....+||.++++.+|..
T Consensus 49 ~~v~~fg~~Ae~v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 49 INVVLWGKLAETLASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred EEEEEehHHHHHHHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 4445444322 23456999999999999887643 2 22457999999998863
No 250
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=29.95 E-value=97 Score=28.84 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=36.1
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~ 131 (567)
+.|++..... .+.+.|+.|+-|.|+|.+....- | ....+||.+++|.++..
T Consensus 56 ~~V~~wg~~Ae~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~ 112 (148)
T PRK08182 56 APVELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPY 112 (148)
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCC
Confidence 6666665432 24456999999999999976531 2 23468999999988764
No 251
>PRK06386 replication factor A; Reviewed
Probab=29.69 E-value=3.9e+02 Score=28.77 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=52.8
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEeee------ecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGR------EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVY 103 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR------~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~ 103 (567)
++|+||.. .++-|.|.|+|-.+- +.|...+.=..|-|+||. |-+.+... ...+..|++|.
T Consensus 3 ~kI~DI~~--------~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~--I~fT~W~~----~~~l~~Gd~v~ 68 (358)
T PRK06386 3 SKISDINA--------ARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGT--VPFTAWEF----PDAVKSGDVIE 68 (358)
T ss_pred cchhhcCC--------CCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcce--EEEEecCC----cccCCCCCEEE
Confidence 45666652 456788888887543 223222444456788764 87777653 23578999999
Q ss_pred EEeEEeCCCCCCcceeEEEEeEEE
Q 008405 104 VEGMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 104 V~G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
+.+.....-. |.++|.+.+..
T Consensus 69 i~na~v~~~~---G~~~Lnv~~~t 89 (358)
T PRK06386 69 IKYCYSKEYN---GKIRIYFDSRS 89 (358)
T ss_pred EEeEEEeeEC---CEEEEEEcCce
Confidence 9998776643 57888885443
No 252
>PLN02530 histidine-tRNA ligase
Probab=29.68 E-value=47 Score=37.09 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=27.2
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|+||+|||.|.....| .-||+|+.+|.-+.+
T Consensus 166 r~~y~g~vfR~e~~q~gr-~REf~Q~giEiiG~~ 198 (487)
T PLN02530 166 KWFAIGQCWRYERMTRGR-RREHYQWNMDIIGVP 198 (487)
T ss_pred EEEEEcCEEcCcCCCCCC-ccceEEcCeeEeCCC
Confidence 889999999999874444 569999999987654
No 253
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=29.56 E-value=1.6e+02 Score=26.76 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=40.2
Q ss_pred eeehhhccCCCCCCCCCCCE--EEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeE
Q 008405 30 VLIKSILTRPDGGAGLAGRQ--VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGM 107 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~--V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~ 107 (567)
.+|+||.. +.+...-+ |..-|++.+..+ |+ +++=.-+-|.++.-++| +..+ +...+..||+|..+|=
T Consensus 5 i~ikdi~P----~~kN~~v~fIvl~~g~~tkTkd-g~-~v~~~kVaD~TgsI~is--vW~e---~~~~~~PGDIirLt~G 73 (134)
T KOG3416|consen 5 IFIKDIKP----GLKNINVTFIVLEYGRATKTKD-GH-EVRSCKVADETGSINIS--VWDE---EGCLIQPGDIIRLTGG 73 (134)
T ss_pred hhHhhcCh----hhhcceEEEEEEeeceeeeccC-CC-EEEEEEEecccceEEEE--EecC---cCcccCCccEEEeccc
Confidence 45667664 22222222 344566665544 43 57777778998763444 4443 2467899999999864
No 254
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=29.32 E-value=91 Score=30.02 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=33.5
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEe---EEEEecC
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQ---KVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~---~i~vls~ 131 (567)
+.|++-.+.. .+.+.|++||-|.|+|.+....- | ....+||.+. +++.|+.
T Consensus 56 ~~V~~fgk~Ae~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~ 115 (177)
T PRK09010 56 HRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115 (177)
T ss_pred EEEEEehhHHHHHHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccC
Confidence 5566655432 23456999999999999987642 1 2245677766 6777764
No 255
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=28.82 E-value=34 Score=39.15 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=24.5
Q ss_pred CcceeeecHHHHHHHHcCCCCccccccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDVIPF 558 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdvi~F 558 (567)
++-.-|||+|||+++|-|.+|+=|+=+|
T Consensus 224 k~IDTGmGLERl~~vlqg~~s~ydtdlf 251 (594)
T PRK01584 224 KCVDTGMGIERTIAFLQGKSSVYDTEAF 251 (594)
T ss_pred CceeCCcCHHHHHHHHcCCCCccchhhh
Confidence 5778999999999999999999888444
No 256
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=28.32 E-value=63 Score=25.66 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhcCCcEEE
Q 008405 167 RIRNALAYATHTFLQKQGFLYI 188 (567)
Q Consensus 167 r~Rs~i~~~iR~fl~~~gF~EV 188 (567)
+.|.+|++.||+||.+.|=++|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4688999999999999997775
No 257
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=28.05 E-value=62 Score=29.33 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=40.5
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc----cccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV----ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~----~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
.|.|.|..|-..| +|+.|..+... | |-++.=. .++...|..|+-|.|.= +.... .|.++|.+..
T Consensus 8 ~l~GkItgI~~yG----AFV~l~~g~tG--L-VHISEIa~~fVkdI~d~L~vG~eV~vKV-l~ide---~GKisLSIr~ 75 (129)
T COG1098 8 KLKGKITGITPYG----AFVELEGGKTG--L-VHISEIADGFVKDIHDHLKVGQEVKVKV-LDIDE---NGKISLSIRK 75 (129)
T ss_pred eEEEEEEeeEecc----eEEEecCCCcc--e-EEehHhhhhhHHhHHHHhcCCCEEEEEE-Eeecc---CCCcceehHH
Confidence 3789999999999 99999876431 1 1122111 23455689999998872 22222 3577777654
No 258
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=27.99 E-value=1.4e+02 Score=23.25 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=30.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
.|.|.|.++...| +|++|..+ ...++...... ....++.||.|.+.
T Consensus 3 iv~g~V~~i~~~~----~~v~l~~~-----~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE----VLVDIGYK-----SEGIIPISEFSDDPIENGEDEVKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE----EEEEeCCC-----ceEEEEHHHhCccccCCHhHcCCCCCEEEEE
Confidence 3689999998765 89999432 46666543311 22347889988776
No 259
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=27.92 E-value=2.3e+02 Score=27.51 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCCCCCEEEEEEEEEeeeecCCceeEEEEEe----cCCCCceeEEEEeCCc-c-------ccc--cCCCCCcEEEEEeE
Q 008405 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVN----DGSCPANLQVIVDKDV-A-------DLG--QLVPTGTCVYVEGM 107 (567)
Q Consensus 42 ~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLr----D~~~~~~iQvv~~~~~-~-------~~~--~~l~~gs~V~V~G~ 107 (567)
...+.|+.|++.|.|.++++... -+-+.|- |.++. =+. +... . .|. ... .|--|.|.|+
T Consensus 43 p~~y~G~~Vr~GG~I~~v~N~~~--~T~lEVv~~PLd~~gr--P~~--~~~s~GRFla~~~gFLDP~~y-~Gr~VTVvG~ 115 (182)
T TIGR00752 43 PLLYVGQTARFGGKVVNVTNLAN--QTKLEIASLPLDSIAK--PFV--ELQSDGRFIAYFNGFLDPVNL-RERYVTVGGQ 115 (182)
T ss_pred hhhcCCCEEEECCEEEEEEECCC--ceEEEEEEcccCCCCC--cCC--CCCCCCEEEEEeCCCcChhhc-CCCEEEEEEE
Confidence 34678999999999999999884 4555553 22111 000 0000 0 122 124 6999999999
Q ss_pred EeCCCCCCcceeE-----EEEeEEEEe
Q 008405 108 LKNPPEGTKQKIE-----LRVQKVVDV 129 (567)
Q Consensus 108 v~~~~~~~~~~lE-----l~~~~i~vl 129 (567)
+.....++-++.+ |.++.+.+=
T Consensus 116 i~G~e~gkIGe~~Y~yPvv~~~~~~lW 142 (182)
T TIGR00752 116 IAGTEKGKIEQAPYTFPVVQADGYRIW 142 (182)
T ss_pred ecceEEeeeCCCcceeEEEEeeeEEec
Confidence 9887766556664 555555543
No 260
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=27.79 E-value=24 Score=42.39 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=26.4
Q ss_pred CC-CcceeeecHHHHHHHHcCCCCccccccccC
Q 008405 529 TV-KHSGFGLGFERMILFATGIDNIRDVIPFPR 560 (567)
Q Consensus 529 ~P-P~gG~GiGiDRLlMll~g~~nIrdvi~FPr 560 (567)
|| ++---|+|+|||++++-|.+++=|+ +|+-
T Consensus 232 Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ 263 (902)
T TIGR03683 232 MPLKIVDTGYGLERFVWASQGTPTAYDA-IFPE 263 (902)
T ss_pred CCCCceecCCCHHHHHHHHcCCCchHHH-HHHH
Confidence 44 5677899999999999999999999 6653
No 261
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=27.46 E-value=1.9e+02 Score=22.60 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEec
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVND 74 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD 74 (567)
.+.|+|..+...| +|+.|.+
T Consensus 6 ~~~g~V~~i~~~G----~fv~l~~ 25 (72)
T cd05689 6 RLFGKVTNLTDYG----CFVELEE 25 (72)
T ss_pred EEEEEEEEEEeeE----EEEEcCC
Confidence 4899999999988 8999965
No 262
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=26.91 E-value=1.8e+02 Score=24.59 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=42.1
Q ss_pred EEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCCC----CcceeEEEEeEEEEecCCC
Q 008405 70 LEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 70 idLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~~----~~~~lEl~~~~i~vls~~~ 133 (567)
+.|-|..| .+||+.+.+... .|...|..|++..++-..+....+ +...+.|....-+.+.+++
T Consensus 2 mvL~De~G-~~I~A~I~~~~~~~f~~~l~Eg~~y~i~~F~V~~~~~~yr~t~h~y~I~f~~~T~V~~~~ 69 (95)
T PF02721_consen 2 MVLVDEKG-DKIQATIPKELVDKFKDSLKEGSWYTISNFTVSPNSGSYRPTDHKYKINFMPNTKVTEID 69 (95)
T ss_pred EEEEecCC-CEEEEEECHHHHHHHHhhcccCCEEEeEeEEEEeCCCceeccCCCEEEEECCcCeEEECC
Confidence 35677777 489999987653 356678889988887654443322 3456667666666676664
No 263
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=26.80 E-value=3.3e+02 Score=32.04 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=52.5
Q ss_pred cccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEe-------cCCCCceeEEEEeCCccccccCCCC
Q 008405 26 FSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVN-------DGSCPANLQVIVDKDVADLGQLVPT 98 (567)
Q Consensus 26 ~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLr-------D~~~~~~iQvv~~~~~~~~~~~l~~ 98 (567)
+..+++|-+|.+.+--..-..+..|++.|-|..+=..|++..-|..=. |.....-|=|.+.++. .. +..
T Consensus 193 ~~~~~~I~~iQG~G~~s~~~~~~vvtieGvVtav~~~gs~~~GFyvQ~~~~~~d~d~~TSeGIFVy~~g~~---~~-l~l 268 (798)
T COG2374 193 ALVLTSIGQIQGEGHRSGPLGGGVVTIEGVVTAVTAGGSGVRGFYVQEEDTDVDGDPATSEGIFVYEGGAS---SD-LSL 268 (798)
T ss_pred cceeeechheeecccccccccCCeeEEEEEEEEEecCCCcccceEeecCCcCCCCCcccccceEEEeCCCC---CC-CCC
Confidence 456788888876422222456788999999999988885311354322 1112233555553332 22 889
Q ss_pred CcEEEEEeEEeCCC
Q 008405 99 GTCVYVEGMLKNPP 112 (567)
Q Consensus 99 gs~V~V~G~v~~~~ 112 (567)
||.|.|+|+|.+--
T Consensus 269 Gd~V~VtG~V~Ey~ 282 (798)
T COG2374 269 GDRVTVTGTVSEYY 282 (798)
T ss_pred CCEEEEEEEEEeec
Confidence 99999999998754
No 264
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=26.72 E-value=32 Score=39.02 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=29.9
Q ss_pred cEEEEecccccCCCCCC-----CCccccccceeeeccCCHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTS-----RHLAEFWMVEPEMAFSDLKDDMNCAEAYVK 369 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~-----rHlpEFtmLE~e~a~~d~~~lm~~~E~li~ 369 (567)
|+|++|+|||+|.+ +. |- -||+|.|+|.-.. .++.....++++.
T Consensus 284 rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~~~-~~~~~~e~~~~i~ 332 (563)
T TIGR00418 284 RIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIFCT-EDQIKEEFKNQFR 332 (563)
T ss_pred eeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEEcC-HHHHHHHHHHHHH
Confidence 99999999999965 32 32 3899999997544 4444444333333
No 265
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=26.64 E-value=53 Score=36.83 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=24.2
Q ss_pred cEEEEecccccCCCCCCC----CccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSR----HLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~r----HlpEFtmLE~e~a~~d 356 (567)
.|-|||++||||=+ +| -+-||||+|+|. |.+
T Consensus 189 giaQIGKsfRNEIS--Pr~gl~R~REF~QaEiE~-Fv~ 223 (558)
T COG0423 189 GIAQIGKSFRNEIS--PRNGLFRTREFEQAEIEF-FVD 223 (558)
T ss_pred EEEeechhhccccC--cccceeehhhhhhhheee-EEC
Confidence 68999999999943 33 457999999985 444
No 266
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=26.26 E-value=1.8e+02 Score=29.09 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCCEEEEEEEEEe---eee--cCCceeEEEEE-----ecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEe-C-CC-
Q 008405 46 AGRQVRVGGWVKT---GRE--QGKGSFAFLEV-----NDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLK-N-PP- 112 (567)
Q Consensus 46 ~g~~V~v~GwV~~---iR~--~gk~~l~FidL-----rD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~-~-~~- 112 (567)
.+..|.|.|+|.+ .|- .|.+ +.=+.| ++... -|.|+++....+... +..|+.|.|+|.+. - ..
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~-~~~f~laV~R~s~~~D--~i~v~v~~rlae~~~-l~kG~~v~VeGqlrsy~~~~ 82 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEG-FYNFKLEVPRLSDSKD--ILPVTVSERLLAGMD-LKVGTLVIVEGQLRSYNKFI 82 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeE-EEEEEEEeeccCCCcc--EEEEEEEhhhhhhhc-ccCCCEEEEEEEEEEeccCC
Confidence 4668999999853 232 3321 222222 13333 488888876543333 89999999999998 2 11
Q ss_pred CC-CcceeEEEEeEEEEecCC
Q 008405 113 EG-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 113 ~~-~~~~lEl~~~~i~vls~~ 132 (567)
.| +.--+||.+.+++.++..
T Consensus 83 ~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 83 DGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred CCcEEEEEEEEEEEEEEccCC
Confidence 12 234579999999988763
No 267
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=26.02 E-value=1.8e+02 Score=22.76 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=31.6
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
+.|+|.++...| +|++|.++ +...+..+... ....+..|+.|.|.
T Consensus 8 v~g~V~~v~~~g----~~V~l~~~-----~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~ 58 (74)
T PF00575_consen 8 VEGKVTSVEDFG----VFVDLGNG-----IEGFIPISELSDDRIDDPSEVYKIGQTVRVK 58 (74)
T ss_dssp EEEEEEEEETTE----EEEEESTS-----SEEEEEGGGSSSSEESSSHGTCETTCEEEEE
T ss_pred EEEEEEEEECCE----EEEEECCc-----EEEEEEeehhcCccccccccccCCCCEEEEE
Confidence 689999998866 99999732 67777755422 22457788887665
No 268
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=25.75 E-value=4.9e+02 Score=23.35 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=53.4
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEE--ecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEe
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEV--NDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEG 106 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidL--rD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G 106 (567)
+++.+|. .+....|+.|++-|++++.-..- .++=+.= .++ .-|+.++-+. ..+ ..+.||.+.|-|
T Consensus 8 ~~l~Evs----~~~~~~g~svR~~GrL~~yD~~~--~~a~l~~~~~~~----~~~l~V~t~~l~~~--~~~~gslyq~iG 75 (118)
T PF15490_consen 8 VFLWEVS----SGFVPEGKSVRTFGRLQSYDVAT--SRATLTAQHESD----QHSLKVDTKLLEPF--QARVGSLYQFIG 75 (118)
T ss_pred EehHHhc----CccccCCCeEEEEEEEEEEeccC--CEEEEEeeccCC----CcEEEEEeeEcccc--ccCCCCEEEEEE
Confidence 4455653 13467899999999999996655 3543311 332 2566666443 111 347999999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEe
Q 008405 107 MLKNPPEGTKQKIELRVQKVVDV 129 (567)
Q Consensus 107 ~v~~~~~~~~~~lEl~~~~i~vl 129 (567)
.+...+. .++..|.+.-.+.+
T Consensus 76 El~~~~~--~~~~~L~ARV~r~V 96 (118)
T PF15490_consen 76 ELEHQPQ--DGGIVLKARVLRCV 96 (118)
T ss_pred EEEEEcC--CCcEEEEEEEEEec
Confidence 9988732 25666666443333
No 269
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=25.46 E-value=2e+02 Score=21.66 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=30.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--cc----ccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DL----GQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~~----~~~l~~gs~V~V~ 105 (567)
.+.|.|..+...| +|++|.++ ++..+..+.. +. ...++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g----~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG----AFVELGGG-----ISGLVHISQIAHKRVKDVKDVLKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee----EEEEECCC-----CEEEEEhHHcCCcccCCHHHccCCCCEEEEE
Confidence 3678999999877 89998643 4556654321 11 1347889998775
No 270
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=25.27 E-value=30 Score=41.70 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.5
Q ss_pred CC-CcceeeecHHHHHHHHcCCCCccccccccC
Q 008405 529 TV-KHSGFGLGFERMILFATGIDNIRDVIPFPR 560 (567)
Q Consensus 529 ~P-P~gG~GiGiDRLlMll~g~~nIrdvi~FPr 560 (567)
|| ++---|+|+|||++++-|.+++=|+ +|+-
T Consensus 228 Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ 259 (900)
T PRK13902 228 MPLKIVDTGYGLERIAWASQGTPTAYDA-IFGE 259 (900)
T ss_pred CCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHH
Confidence 44 6778899999999999999999999 6653
No 271
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=25.20 E-value=58 Score=32.92 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=41.4
Q ss_pred ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008405 476 KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 476 ~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
.+...+|+.+ +|.|+. +- .|-++. .|++ .-|-++-+--|+|||.|.+-|.+||-|+
T Consensus 126 awGlGWEVWl-dGMEvT----QF-TYFQQv-----GGie-------------c~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 126 AWGLGWEVWL-DGMEVT----QF-TYFQQV-----GGLE-------------CKPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ccccceeEEE-cCeeee----ee-ehhhhh-----CCee-------------ccceeeeeehhHHHHHHHHhCccceeEE
Confidence 3456789999 578885 21 222221 3343 1355677888999999999999999998
Q ss_pred ccccC
Q 008405 556 IPFPR 560 (567)
Q Consensus 556 i~FPr 560 (567)
..=..
T Consensus 182 ~W~~~ 186 (298)
T COG0752 182 EWNDG 186 (298)
T ss_pred eecCC
Confidence 75433
No 272
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=25.08 E-value=2.4e+02 Score=21.99 Aligned_cols=45 Identities=13% Similarity=0.029 Sum_probs=29.9
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c----cccCCCCCcEEEEE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~----~~~~l~~gs~V~V~ 105 (567)
+.|.|..+...| +|+.|..+ ++.++..... + ....++.||.|.+.
T Consensus 7 v~g~V~~v~~~g----i~v~l~~~-----~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~ 57 (73)
T cd05706 7 LPGRVTKVNDRY----VLVQLGNK-----VTGPSFITDALDDYSEALPYKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEeCCe----EEEEeCCC-----cEEEEEhhhccCccccccccccCCCCEEEEE
Confidence 689999998876 89998553 5666654321 1 12346788887764
No 273
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=24.69 E-value=2.1e+02 Score=22.01 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=28.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc-------ccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL-------GQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~-------~~~l~~gs~V~V~ 105 (567)
.+.|+|.++...| +|++|.++ +...+......+ ...++.|+.|.|.
T Consensus 3 ~~~g~V~~i~~~G----~fv~l~~~-----~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~ 55 (69)
T cd05690 3 VVSGKIKSITDFG----IFVGLDGG-----IDGLVHISDISWTQRVRHPSEIYKKGQEVEAV 55 (69)
T ss_pred EEEEEEEEEEeee----EEEEeCCC-----CEEEEEHHHCCCccccCChhhEECCCCEEEEE
Confidence 3789999999988 89999653 444444322111 1224667766654
No 274
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=24.65 E-value=3e+02 Score=20.93 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=34.8
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~ 105 (567)
.+.|.|..+...| ...++.+.-+.+ ..|-+.++.+... ...|..|+-|.+.
T Consensus 6 ~l~g~V~~ie~~g--~~~~v~~~~~~~-~~l~a~it~~~~~-~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLG--SEVEVTLDLGGG-ETLTARITPESAE-ELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESS--SEEEEEEEETTS-EEEEEEEEHHHHH-HCT-STT-EEEEE
T ss_pred EEEEEEEEEEECC--CeEEEEEEECCC-CEEEEEEcHHHHH-HcCCCCCCEEEEE
Confidence 4889999999999 689999876654 2477777654311 2247889888764
No 275
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.68 E-value=1.6e+02 Score=23.87 Aligned_cols=49 Identities=27% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc------ccccCCCCCcEEEEE
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~------~~~~~l~~gs~V~V~ 105 (567)
.|+. +.|.|.++...| +|++|-++ ++..+..... +....++.|+.|.|.
T Consensus 14 ~G~i--~~g~V~~v~~~G----~fv~l~~~-----~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vk 68 (83)
T cd04461 14 PGMV--VHGYVRNITPYG----VFVEFLGG-----LTGLAPKSYISDEFVTDPSFGFKKGQSVTAK 68 (83)
T ss_pred CCCE--EEEEEEEEeece----EEEEcCCC-----CEEEEEHHHCCcccccCHHHhcCCCCEEEEE
Confidence 4554 469999999988 89999643 5666664331 122347888888775
No 276
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=23.64 E-value=2.3e+02 Score=21.33 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=29.9
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c-c---ccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D-L---GQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~-~---~~~l~~gs~V~V~ 105 (567)
.+.|+|..+...| +|++|.++ +..++..... . + ...++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~G----~fv~l~~~-----~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd05685 3 VLEGVVTNVTDFG----AFVDIGVK-----QDGLIHISKMADRFVSHPSDVVSVGDIVEVK 54 (68)
T ss_pred EEEEEEEEEeccc----EEEEcCCC-----CEEEEEHHHCCCccccCHHHhcCCCCEEEEE
Confidence 3789999998887 89999653 4555553321 1 1 1236788888775
No 277
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=22.19 E-value=52 Score=33.06 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeee
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIIT 194 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~ 194 (567)
++|.+.+-+||.++|.+.|...-|.
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slv 26 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVV 26 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcC
Confidence 4577888899999999888755554
No 278
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=71 Score=34.93 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeee
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIIT 194 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~ 194 (567)
-+.+|..|.+.|.+-|..+|..+|+||++-
T Consensus 73 qm~lRe~if~~i~~vFkrhGa~~iDTPVFE 102 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVFKRHGAETIDTPVFE 102 (518)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccccchh
Confidence 468999999999999999999999999873
No 279
>PRK08582 hypothetical protein; Provisional
Probab=22.13 E-value=2.5e+02 Score=25.74 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=36.8
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c----cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~----~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
+.|.|..+...| +|++|-++ +..++..+.. + ....++.||.|.|. |..... .+.+.|.+..
T Consensus 9 v~G~V~~I~~fG----~fV~L~~~-----~~GlVhiSels~~~v~~~~~~l~vGD~Vkvk--V~~id~--~gkI~LSlk~ 75 (139)
T PRK08582 9 LQGKVTGITNFG----AFVELPEG-----KTGLVHISEVADNYVKDINDHLKVGDEVEVK--VLNVED--DGKIGLSIKK 75 (139)
T ss_pred EEEEEEEEECCe----EEEEECCC-----CEEEEEeeccCcccccccccccCCCCEEEEE--EEEECC--CCcEEEEEEe
Confidence 789999999988 99999653 3334432221 1 12457889988775 222211 1466666543
No 280
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=22.03 E-value=3.2e+02 Score=21.89 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEE
Q 008405 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (567)
Q Consensus 45 ~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~ 105 (567)
..|+. +.|.|.++.+.| +|+.|.++ +...+..+. +...++.|+.|.|.
T Consensus 15 ~~G~~--~~g~V~~i~~~G----~fV~l~~~-----~~Glv~~se--~~~~~~iGd~v~v~ 62 (77)
T cd04473 15 EVGKL--YKGKVNGVAKYG----VFVDLNDH-----VRGLIHRSN--LLRDYEVGDEVIVQ 62 (77)
T ss_pred CCCCE--EEEEEEeEecce----EEEEECCC-----cEEEEEchh--ccCcCCCCCEEEEE
Confidence 34654 689999999988 89999653 344444433 23457888888775
No 281
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=46 Score=37.45 Aligned_cols=6 Identities=17% Similarity=-0.047 Sum_probs=3.6
Q ss_pred ccccee
Q 008405 345 FWMVEP 350 (567)
Q Consensus 345 FtmLE~ 350 (567)
|-||=+
T Consensus 200 fKQLLM 205 (585)
T COG0173 200 FKQLLM 205 (585)
T ss_pred HHHHHH
Confidence 666644
No 282
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.41 E-value=1.9e+02 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=31.9
Q ss_pred EEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc--------cccccCCCCCcEEEEE
Q 008405 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--------ADLGQLVPTGTCVYVE 105 (567)
Q Consensus 51 ~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~--------~~~~~~l~~gs~V~V~ 105 (567)
.|.|.|.++-+.| +|+.|.++ |...+.... .++.+.++.|+.|.++
T Consensus 3 ~V~g~V~~i~~~g----~~V~l~~~-----i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF----VWLTISPD-----VKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE----EEEEeCCC-----cEEEEEHHHcCCccccccCHHHhCCCCCEEEEE
Confidence 3789999998777 99999653 566665322 1233458899988775
No 283
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=21.14 E-value=1.2e+02 Score=29.46 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=30.2
Q ss_pred eEEEEeCCcc-ccccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEE
Q 008405 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKV 126 (567)
Q Consensus 81 iQvv~~~~~~-~~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i 126 (567)
+.|++-.+.. .+.+.|++||.|.|+|.+....- + ....+||.+++|
T Consensus 55 i~V~~Wg~~Ae~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 55 LRCSIWRQAAENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEecHHHHHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 6777765542 24567999999999999987632 1 123456666543
No 284
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=20.59 E-value=50 Score=39.64 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.9
Q ss_pred CC-CcceeeecHHHHHHHHcCCCCccccccc
Q 008405 529 TV-KHSGFGLGFERMILFATGIDNIRDVIPF 558 (567)
Q Consensus 529 ~P-P~gG~GiGiDRLlMll~g~~nIrdvi~F 558 (567)
+| +|---|||+|||++++-|.+|.=|+=+|
T Consensus 216 Lp~~~iDTG~GlER~~~ilq~~~snydtd~f 246 (865)
T PRK00252 216 LPKKNIDTGMGLERIAAVLQGVHSNYETDLF 246 (865)
T ss_pred CCCCeeecCcCHHHHHHHHcCCCCcchhhhH
Confidence 44 5678899999999999999998887444
No 285
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=20.24 E-value=2.4e+02 Score=21.83 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=30.4
Q ss_pred EEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--c----cccCCCCCcEEEEE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~----~~~~l~~gs~V~V~ 105 (567)
+.|.|..+...| +|++|.++ +...+..... + ....++.||.|.+.
T Consensus 4 v~g~V~~v~~~g----~~v~l~~~-----~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~ 54 (73)
T cd05691 4 VTGKVTEVDAKG----ATVKLGDG-----VEGFLRAAELSRDRVEDATERFKVGDEVEAK 54 (73)
T ss_pred EEEEEEEEECCe----EEEEeCCC-----CEEEEEHHHCCCccccCHHHccCCCCEEEEE
Confidence 679999998766 89999653 5566654321 1 22347889988875
No 286
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.11 E-value=78 Score=34.95 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 167 RIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 167 r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
++-+.++..||.-...+||.||-||.+-..
T Consensus 193 ~iyN~Lv~fir~ey~~rGf~EVitPniy~~ 222 (560)
T KOG1637|consen 193 RIYNTLVDFIRAEYRKRGFTEVITPNIYNK 222 (560)
T ss_pred hHHHHHHHHHHHHHHhcCCceecCcchhhh
Confidence 778899999999999999999999999764
Done!