Query 008405
Match_columns 567
No_of_seqs 212 out of 1569
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 01:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m4p_A Ehasnrs, asparaginyl-tR 100.0 6E-101 2E-105 829.5 38.4 431 22-566 12-455 (456)
2 3nem_A Aspartyl-tRNA synthetas 100.0 2E-100 6E-105 822.0 40.0 421 27-566 2-437 (438)
3 3i7f_A Aspartyl-tRNA synthetas 100.0 1.8E-98 6E-103 819.4 37.3 447 3-566 24-547 (548)
4 2xgt_A Asparaginyl-tRNA synthe 100.0 2.2E-98 7E-103 807.8 35.8 425 31-566 2-434 (435)
5 1wyd_A Hypothetical aspartyl-t 100.0 8.9E-96 3E-100 785.1 38.8 420 28-566 3-428 (429)
6 1n9w_A Aspartyl-tRNA synthetas 100.0 3E-95 1E-99 779.5 34.7 410 29-566 2-421 (422)
7 1eov_A ASPRS, aspartyl-tRNA sy 100.0 7.1E-94 2.4E-98 781.5 40.5 447 8-566 2-486 (487)
8 1x54_A Asparaginyl-tRNA synthe 100.0 7.8E-94 2.7E-98 771.6 37.6 422 28-566 3-433 (434)
9 3bju_A Lysyl-tRNA synthetase; 100.0 1.5E-92 5.3E-97 775.4 37.2 443 17-564 23-508 (521)
10 4ex5_A Lysine--tRNA ligase; st 100.0 1.5E-92 5.3E-97 771.8 35.3 426 25-563 60-527 (529)
11 1l0w_A Aspartyl-tRNA synthetas 100.0 3.7E-91 1.3E-95 772.4 41.2 416 28-567 3-557 (580)
12 1e1o_A Lysyl-tRNA synthetase, 100.0 2E-91 6.7E-96 763.2 36.1 432 19-564 33-503 (504)
13 1c0a_A Aspartyl tRNA synthetas 100.0 3.4E-90 1.2E-94 766.9 38.7 435 29-567 3-563 (585)
14 3a74_A Lysyl-tRNA synthetase; 100.0 1.8E-90 6.3E-95 754.4 32.9 432 18-563 24-492 (493)
15 4ah6_A Aspartate--tRNA ligase, 100.0 2.4E-79 8.3E-84 676.7 33.7 411 24-563 7-570 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 3.7E-70 1.3E-74 570.8 25.3 285 156-562 27-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 7.2E-64 2.4E-68 514.3 25.4 278 151-565 1-291 (294)
18 12as_A Asparagine synthetase; 99.8 2.2E-19 7.6E-24 180.6 20.5 227 301-557 64-315 (330)
19 3qtc_A Pyrrolysyl-tRNA synthet 99.8 2.5E-20 8.7E-25 190.7 3.5 169 115-370 23-205 (290)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.6 4.5E-15 1.5E-19 151.4 13.0 58 479-559 219-277 (288)
21 1b7y_A Phers, protein (phenyla 99.4 3.2E-12 1.1E-16 133.4 16.3 64 306-371 177-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.2 1.3E-10 4.5E-15 118.8 15.1 68 304-372 110-184 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.1 2.1E-10 7.1E-15 118.4 12.8 48 323-372 186-235 (327)
24 3l4g_A Phenylalanyl-tRNA synth 98.8 6.9E-09 2.4E-13 112.4 10.2 44 323-367 349-394 (508)
25 3cmq_A Phenylalanyl-tRNA synth 98.3 7.1E-06 2.4E-10 87.4 13.8 39 315-354 126-164 (415)
26 2dq3_A Seryl-tRNA synthetase; 97.9 3.2E-05 1.1E-09 82.7 10.0 33 164-196 170-202 (425)
27 2du3_A O-phosphoseryl-tRNA syn 97.7 0.0001 3.4E-09 80.4 9.7 47 323-369 207-255 (534)
28 2i4l_A Proline-tRNA ligase; al 97.7 6.8E-05 2.3E-09 81.0 8.0 33 164-196 65-97 (458)
29 1evl_A Threonyl-tRNA synthetas 97.6 6.6E-05 2.2E-09 79.6 6.6 32 165-196 29-60 (401)
30 1qe0_A Histidyl-tRNA synthetas 97.6 0.00015 5E-09 77.2 9.0 32 165-196 15-46 (420)
31 1hc7_A Prolyl-tRNA synthetase; 97.6 0.00026 9.1E-09 76.7 11.1 33 165-197 43-75 (477)
32 1ses_A Seryl-tRNA synthetase; 97.5 0.00037 1.3E-08 74.4 10.8 32 165-196 165-196 (421)
33 1z7m_A ATP phosphoribosyltrans 97.5 0.00065 2.2E-08 70.6 11.8 32 165-196 35-66 (344)
34 1wu7_A Histidyl-tRNA synthetas 97.4 0.00056 1.9E-08 73.1 11.2 32 165-196 19-50 (434)
35 3uh0_A Threonyl-tRNA synthetas 97.4 0.0001 3.6E-09 79.6 4.6 32 165-196 63-95 (460)
36 2j3l_A Prolyl-tRNA synthetase; 97.4 0.00054 1.8E-08 75.9 10.4 33 164-196 45-77 (572)
37 3qne_A Seryl-tRNA synthetase, 97.3 0.00031 1.1E-08 75.8 7.8 33 164-196 183-215 (485)
38 1nyr_A Threonyl-tRNA synthetas 97.3 0.00033 1.1E-08 78.8 7.9 33 164-196 269-301 (645)
39 1h4v_B Histidyl-tRNA synthetas 97.2 0.001 3.6E-08 70.6 10.8 31 166-196 17-47 (421)
40 3lss_A Seryl-tRNA synthetase; 97.2 0.00077 2.6E-08 72.8 9.4 33 164-196 206-238 (484)
41 1nj8_A Proline-tRNA synthetase 97.2 0.0005 1.7E-08 74.2 7.9 32 165-196 37-68 (459)
42 3od1_A ATP phosphoribosyltrans 97.2 0.00096 3.3E-08 70.7 9.9 31 166-196 24-54 (400)
43 4e51_A Histidine--tRNA ligase; 97.2 0.00072 2.5E-08 73.1 9.0 32 165-196 45-76 (467)
44 1htt_A Histidyl-tRNA synthetas 97.2 0.00088 3E-08 71.2 9.4 32 165-196 17-48 (423)
45 2du7_A O-phosphoseryl-tRNA syn 97.2 0.0015 5.1E-08 71.3 10.9 46 323-368 219-266 (549)
46 1wle_A Seryl-tRNA synthetase; 97.1 0.0029 9.8E-08 68.8 12.6 33 164-196 217-249 (501)
47 1qf6_A THRRS, threonyl-tRNA sy 97.1 0.00042 1.4E-08 77.9 6.1 33 164-196 269-301 (642)
48 1nj1_A PROR, proline-tRNA synt 97.1 0.0022 7.6E-08 69.9 11.5 48 323-370 159-209 (501)
49 3err_A Fusion protein of micro 97.1 0.0024 8.4E-08 70.0 11.8 33 164-196 273-305 (536)
50 3vbb_A Seryl-tRNA synthetase, 97.0 0.00095 3.2E-08 72.6 8.0 33 164-196 199-231 (522)
51 2dq0_A Seryl-tRNA synthetase; 97.0 0.00079 2.7E-08 72.5 7.3 33 164-196 191-223 (455)
52 4hvc_A Bifunctional glutamate/ 97.0 0.0012 4E-08 72.3 8.6 48 323-370 150-199 (519)
53 3net_A Histidyl-tRNA synthetas 97.0 0.0014 4.9E-08 70.7 9.1 30 165-194 25-54 (465)
54 3kdf_D Replication protein A 3 97.0 0.0045 1.6E-07 55.2 10.7 76 49-131 33-111 (132)
55 3rac_A Histidine-tRNA ligase; 97.0 0.0015 5E-08 68.7 8.4 31 166-196 37-67 (373)
56 3ial_A Prolyl-tRNA synthetase; 96.9 0.001 3.6E-08 72.6 6.8 48 323-370 144-193 (518)
57 2cja_A Seryl-tRNA synthetase; 96.8 0.00088 3E-08 73.1 5.3 53 323-376 346-401 (522)
58 2k50_A Replication factor A re 96.7 0.0069 2.4E-07 52.4 9.6 82 46-132 15-105 (115)
59 3lc0_A Histidyl-tRNA synthetas 96.7 0.0026 8.8E-08 68.6 8.2 31 166-196 43-73 (456)
60 3a32_A Probable threonyl-tRNA 96.7 0.0018 6.1E-08 70.1 6.3 32 165-196 48-79 (471)
61 4g84_A Histidine--tRNA ligase, 96.6 0.0054 1.9E-07 65.8 10.0 31 165-195 27-57 (464)
62 3e0e_A Replication protein A; 96.6 0.019 6.4E-07 48.4 11.2 86 30-132 3-96 (97)
63 1ati_A Glycyl-tRNA synthetase; 96.6 0.0027 9.3E-08 69.3 7.3 32 165-196 38-71 (505)
64 3dm3_A Replication factor A; p 96.5 0.024 8.2E-07 48.5 11.4 90 28-133 4-101 (105)
65 3kf6_A Protein STN1; OB fold, 96.5 0.024 8.3E-07 52.2 11.6 77 48-131 48-128 (159)
66 4g85_A Histidine-tRNA ligase, 96.3 0.0075 2.6E-07 65.9 8.7 31 165-195 80-110 (517)
67 4gop_B Putative uncharacterize 96.3 0.031 1.1E-06 49.9 11.2 95 29-131 11-116 (136)
68 1nnx_A Protein YGIW; structura 96.0 0.028 9.6E-07 48.4 8.6 83 29-130 25-108 (109)
69 3mf2_A BLL0957 protein; aminoa 95.7 0.044 1.5E-06 56.4 10.5 50 323-373 170-219 (346)
70 2kbn_A Conserved protein; nucl 95.4 0.22 7.6E-06 42.6 12.3 88 29-133 5-95 (109)
71 3ikl_A DNA polymerase subunit 95.3 0.033 1.1E-06 59.7 8.1 48 323-371 175-227 (459)
72 2zt5_A Glycyl-tRNA synthetase; 95.1 0.0067 2.3E-07 68.6 2.2 32 165-196 100-132 (693)
73 1g5h_A Mitochondrial DNA polym 95.0 0.062 2.1E-06 57.7 9.2 49 321-372 162-218 (454)
74 2pi2_A Replication protein A 3 95.0 0.17 5.7E-06 50.5 11.8 97 28-131 47-151 (270)
75 1usy_A ATP phosphoribosyltrans 94.9 0.02 6.8E-07 57.4 4.7 30 323-356 72-101 (275)
76 1o7i_A SSB, SSO2364, single st 94.7 0.13 4.6E-06 44.6 9.1 92 30-138 3-102 (119)
77 2k75_A Uncharacterized protein 94.2 0.44 1.5E-05 40.5 11.0 91 30-141 4-101 (106)
78 3kf8_A Protein STN1; OB fold; 93.3 0.54 1.8E-05 45.2 10.9 84 48-131 86-184 (220)
79 2odr_B Phosphoseryl-tRNA synth 93.1 0.072 2.5E-06 58.8 4.9 49 323-371 226-276 (648)
80 2odr_A Phosphoseryl-tRNA synth 93.0 0.074 2.5E-06 58.8 4.9 49 323-371 226-276 (665)
81 2odr_D Phosphoseryl-tRNA synth 93.0 0.074 2.5E-06 58.8 4.9 49 323-371 226-276 (685)
82 2odr_C Phosphoseryl-tRNA synth 92.9 0.08 2.7E-06 58.7 4.9 49 323-371 226-276 (701)
83 3kdf_A Replication protein A 1 92.5 0.74 2.5E-05 40.2 9.7 71 44-131 19-89 (121)
84 1ynx_A Replication factor-A pr 92.2 0.12 4E-06 44.7 4.2 93 29-133 4-110 (114)
85 3l4g_B Phenylalanyl-tRNA synth 90.6 0.56 1.9E-05 51.9 8.6 47 323-370 473-521 (589)
86 2rhq_B Phenylalanyl-tRNA synth 90.5 1.1 3.8E-05 51.3 11.1 47 323-371 573-632 (795)
87 4gop_A Putative uncharacterize 88.5 1.3 4.6E-05 38.1 7.6 56 44-111 15-70 (114)
88 1j6q_A Cytochrome C maturation 88.1 6.5 0.00022 34.9 11.9 78 44-138 29-111 (136)
89 3au7_A TIAS, putative uncharac 87.5 4.2 0.00014 42.6 12.0 76 46-132 283-362 (402)
90 1jmc_A Protein (replication pr 86.6 0.99 3.4E-05 43.8 6.4 96 28-133 7-114 (246)
91 2pi2_E Replication protein A 1 85.9 5.7 0.00019 35.6 10.4 71 44-131 40-110 (142)
92 3fhw_A Primosomal replication 85.8 1.6 5.5E-05 37.7 6.6 51 81-132 49-99 (115)
93 1sr3_A APO-CCME; OB fold, beta 85.3 8.3 0.00028 34.2 11.0 78 44-138 25-106 (136)
94 3ig2_A Phenylalanyl-tRNA synth 84.7 2.4 8E-05 40.4 7.9 26 171-196 8-33 (213)
95 2hpi_A DNA polymerase III alph 84.7 0.97 3.3E-05 53.9 6.1 79 45-131 1040-1123(1220)
96 3od1_A ATP phosphoribosyltrans 84.1 0.5 1.7E-05 49.8 3.0 33 323-356 105-137 (400)
97 3mxn_B RECQ-mediated genome in 81.5 8.1 0.00028 34.6 9.3 72 48-131 59-130 (150)
98 1wjj_A Hypothetical protein F2 78.6 6.1 0.00021 35.5 7.7 90 27-132 14-120 (145)
99 3qtc_A Pyrrolysyl-tRNA synthet 77.7 1.3 4.4E-05 44.3 3.3 30 527-556 247-277 (290)
100 2kct_A Cytochrome C-type bioge 77.3 29 0.001 28.6 11.0 76 44-133 5-86 (94)
101 4gop_C Putative uncharacterize 75.4 3.1 0.00011 44.2 5.7 83 48-132 14-108 (444)
102 1txy_A Primosomal replication 74.5 6.3 0.00022 33.0 6.4 50 81-131 50-102 (104)
103 3k8a_A Putative primosomal rep 73.6 5.1 0.00017 33.8 5.5 47 81-129 55-101 (103)
104 3tqy_A Single-stranded DNA-bin 72.7 9.7 0.00033 34.5 7.6 51 81-131 58-114 (158)
105 3net_A Histidyl-tRNA synthetas 72.4 1 3.5E-05 48.3 1.0 47 323-370 122-174 (465)
106 3vdy_A SSB, single-stranded DN 71.6 8.4 0.00029 32.8 6.6 52 81-132 52-109 (116)
107 1z7m_A ATP phosphoribosyltrans 70.9 3.7 0.00013 42.1 4.8 34 323-357 119-152 (344)
108 1z9f_A Single-strand binding p 67.8 9.6 0.00033 34.4 6.3 52 81-132 65-122 (153)
109 3f2b_A DNA-directed DNA polyme 62.2 22 0.00076 41.7 9.5 89 30-131 8-103 (1041)
110 3lc0_A Histidyl-tRNA synthetas 60.9 2.8 9.5E-05 44.8 1.6 33 323-356 125-157 (456)
111 3ica_A Phenylalanyl-tRNA synth 60.7 6.1 0.00021 37.5 3.8 26 171-196 8-33 (213)
112 1v1q_A Primosomal replication 59.9 33 0.0011 30.2 8.1 52 81-132 67-120 (134)
113 2fxq_A Single-strand binding p 56.3 23 0.0008 34.6 7.3 82 48-131 129-229 (264)
114 1se8_A Single-strand binding p 54.4 31 0.0011 34.5 8.0 81 49-131 131-233 (301)
115 3rac_A Histidine-tRNA ligase; 52.0 5.4 0.00018 41.4 1.9 34 322-356 118-157 (373)
116 2odr_A Phosphoseryl-tRNA synth 51.0 8.6 0.0003 42.6 3.4 27 170-196 68-94 (665)
117 2odr_D Phosphoseryl-tRNA synth 50.9 8.7 0.0003 42.6 3.4 27 170-196 68-94 (685)
118 3lgj_A Single-stranded DNA-bin 50.8 40 0.0014 30.8 7.4 84 48-132 24-135 (169)
119 2odr_C Phosphoseryl-tRNA synth 49.9 9.2 0.00031 42.6 3.4 27 170-196 68-94 (701)
120 4e51_A Histidine--tRNA ligase; 49.7 8.9 0.00031 40.9 3.2 33 323-356 132-164 (467)
121 2odr_B Phosphoseryl-tRNA synth 48.7 7.8 0.00027 42.8 2.6 26 530-555 332-357 (648)
122 2k52_A Uncharacterized protein 48.5 42 0.0014 26.2 6.3 49 46-105 5-55 (80)
123 2fxq_A Single-strand binding p 48.3 52 0.0018 32.1 8.4 51 81-131 54-109 (264)
124 1fyj_A Multifunctional aminoac 46.8 46 0.0016 24.6 5.9 43 234-276 4-46 (57)
125 1wu7_A Histidyl-tRNA synthetas 46.5 11 0.00037 39.7 3.2 33 323-356 101-133 (434)
126 4g85_A Histidine-tRNA ligase, 46.3 10 0.00035 40.9 3.1 33 323-355 159-192 (517)
127 4g84_A Histidine--tRNA ligase, 46.0 7.8 0.00027 40.9 2.0 33 323-355 106-139 (464)
128 1b7y_B Phers, protein (phenyla 45.6 17 0.00057 41.5 4.8 40 323-371 569-620 (785)
129 3en2_A Probable primosomal rep 44.0 35 0.0012 28.5 5.4 46 81-127 50-95 (101)
130 2vw9_A Single-stranded DNA bin 43.8 14 0.00048 32.4 3.0 51 81-131 51-107 (134)
131 1h4v_B Histidyl-tRNA synthetas 43.7 13 0.00044 38.7 3.3 33 323-356 103-135 (421)
132 1htt_A Histidyl-tRNA synthetas 42.7 13 0.00044 38.8 3.1 34 323-357 103-136 (423)
133 1j5w_A Glycyl-tRNA synthetase 42.5 14 0.00048 36.2 3.0 59 475-557 133-191 (298)
134 2i4l_A Proline-tRNA ligase; al 42.2 8.3 0.00028 41.0 1.5 43 323-365 151-195 (458)
135 2k4k_A GSP13, general stress p 42.0 58 0.002 28.1 6.8 49 46-105 7-61 (130)
136 3rf1_A Glycyl-tRNA synthetase 41.4 16 0.00053 36.1 3.1 60 475-558 145-204 (311)
137 1qe0_A Histidyl-tRNA synthetas 40.3 11 0.00038 39.2 2.2 33 323-356 103-135 (420)
138 1yfs_A Alanyl-tRNA synthetase; 38.0 14 0.00047 39.2 2.4 28 531-558 215-242 (465)
139 2khi_A 30S ribosomal protein S 37.3 60 0.002 27.3 6.0 50 45-105 29-85 (115)
140 2ztg_A Alanyl-tRNA synthetase; 37.3 8.8 0.0003 43.3 0.8 28 531-559 239-266 (739)
141 3pgz_A Single-stranded DNA-bin 36.9 59 0.002 30.4 6.3 51 81-131 76-137 (193)
142 3ull_A DNA binding protein; DN 36.7 35 0.0012 29.6 4.5 52 81-132 69-127 (132)
143 2j3l_A Prolyl-tRNA synthetase; 36.0 12 0.0004 40.9 1.5 42 323-366 131-176 (572)
144 1xjv_A Protection of telomeres 35.8 1.5E+02 0.0052 29.1 9.6 66 46-112 14-84 (294)
145 1gm5_A RECG; helicase, replica 33.4 36 0.0012 38.7 5.0 79 45-129 163-246 (780)
146 3hy0_A Alanyl-tRNA synthetase; 32.7 16 0.00055 38.5 1.8 28 531-558 232-259 (441)
147 2khj_A 30S ribosomal protein S 32.1 42 0.0015 27.9 4.1 50 45-105 30-85 (109)
148 2zze_A Alanyl-tRNA synthetase; 31.6 13 0.00044 42.0 1.0 28 531-559 245-272 (752)
149 2djv_A Methionyl-tRNA syntheta 31.4 96 0.0033 24.6 5.8 53 227-279 10-62 (79)
150 2eqs_A ATP-dependent RNA helic 30.5 68 0.0023 26.4 5.1 53 45-105 11-70 (103)
151 2a19_A EIF-2- alpha, eukaryoti 30.3 94 0.0032 28.4 6.5 51 46-105 15-71 (175)
152 1kl9_A Eukaryotic translation 29.1 84 0.0029 29.0 5.9 51 46-105 15-71 (182)
153 3koj_A Uncharacterized protein 28.1 56 0.0019 27.5 4.2 47 81-127 55-107 (108)
154 1wi5_A RRP5 protein homolog; S 27.2 68 0.0023 27.0 4.6 50 46-105 21-77 (119)
155 1d2d_A TRNA synthetase, tRNA l 25.5 48 0.0016 24.9 2.9 38 238-275 5-42 (59)
156 3m7n_A Putative uncharacterize 23.7 1.5E+02 0.0052 26.9 6.6 50 52-105 61-121 (179)
157 1qvc_A Single stranded DNA bin 23.4 36 0.0012 30.1 2.2 52 80-131 54-114 (145)
158 3eiv_A Single-stranded DNA-bin 22.4 79 0.0027 29.7 4.4 48 81-128 55-108 (199)
159 3f1z_A Putative nucleic acid-b 22.1 3E+02 0.01 22.4 7.2 69 44-112 46-119 (133)
160 3ulp_A Single-strand binding p 22.0 72 0.0025 27.2 3.8 51 81-131 56-119 (124)
161 2vl6_A SSO MCM N-TER, minichro 21.2 1.8E+02 0.0062 28.1 7.0 20 93-112 222-241 (268)
162 1nj8_A Proline-tRNA synthetase 20.5 22 0.00076 37.7 0.1 47 323-369 127-176 (459)
No 1
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=6.3e-101 Score=829.52 Aligned_cols=431 Identities=27% Similarity=0.489 Sum_probs=365.0
Q ss_pred cccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc-cc--cccCCCC
Q 008405 22 QRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-AD--LGQLVPT 98 (567)
Q Consensus 22 ~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~--~~~~l~~ 98 (567)
.|+|-.++++|+++. ++.|++|+|+|||+++|.+|| +++|++|||++|. ||||++++. .+ ....|+.
T Consensus 12 ~~~~~~~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~l~~ 81 (456)
T 3m4p_A 12 TPVETPIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARK-TLIFVELRDGSGY--CQCVIFGKELCEPEKVKLLTR 81 (456)
T ss_dssp ----CCCCEECCSTT-------CCCSSEEEEEEEEEEEECCSS-SEEEEEEECSSCE--EEEEEESTTTTCHHHHTTCCT
T ss_pred cCCCcceEEEhhhhh-------hcCCCEEEEEEEEEEEecCCC-ceEEEEEEeCCcc--EEEEEecccchhhHHhhcCCC
Confidence 367888899999984 578999999999999999986 4999999999975 999998732 11 1246999
Q ss_pred CcEEEEEeEEeCCCCC--Cc-----ceeEEEEeEEEEecCCCCCCCC-CCCcCCChhhhccccccccCcHHHHHHHHHHH
Q 008405 99 GTCVYVEGMLKNPPEG--TK-----QKIELRVQKVVDVGMVDPAKYP-IPKTKLTLEFLRDRIPFRPRTNTIAAVARIRN 170 (567)
Q Consensus 99 gs~V~V~G~v~~~~~~--~~-----~~lEl~~~~i~vls~~~~~~~P-i~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs 170 (567)
||+|.|+|+|++++.+ +. |++||++++++||++|. .+.| ...+..+.|+++++||||+|++.++++|++||
T Consensus 82 g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~-~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs 160 (456)
T 3m4p_A 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP-IDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRS 160 (456)
T ss_dssp TCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC-GGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred ccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC-CCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHH
Confidence 9999999999988743 12 89999999999999974 2122 11234678899999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhh
Q 008405 171 ALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLK 250 (567)
Q Consensus 171 ~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (567)
+|+++||+||.++||+||+||+|++++||||++.|.+
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------------------- 197 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------------------- 197 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CCCCEE-------------------------------------------
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccc-------------------------------------------
Confidence 9999999999999999999999999999999886533
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecc
Q 008405 251 SDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330 (567)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~ 330 (567)
+||++++||+||||||||++++|++||||||||
T Consensus 198 -----------------------------------------------~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~ 230 (456)
T 3m4p_A 198 -----------------------------------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSS 230 (456)
T ss_dssp -----------------------------------------------EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEE
T ss_pred -----------------------------------------------cccCCCcccccCHHHHHHHHHhccCcEEEEEhh
Confidence 589999999999999999988889999999999
Q ss_pred cccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceec
Q 008405 331 FRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410 (567)
Q Consensus 331 FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rit 410 (567)
||||+++++||||||||||||++|.|++++|+++|+||+++++.+.+.+...+..+...+ ..+..||+|||
T Consensus 231 FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~---------~~~~~pf~rit 301 (456)
T 3m4p_A 231 YRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHL---------KLPTRPFKRMT 301 (456)
T ss_dssp ECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---------CCCCSSCEEEE
T ss_pred eecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCccc---------ccCCCCCeEee
Confidence 999999999999999999999999999999999999999999999876543222221111 12467999999
Q ss_pred HHHHHHHHHHHHHcCcccc-cccccccccchhHHhhhccccccCcEEEecCCCCCccccccccC-CcceEEEEEeeeCCe
Q 008405 411 YTEAVELLEVAVKEGKHFE-NKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPKV 488 (567)
Q Consensus 411 y~eA~~~l~~~~~~~~~~~-~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~-d~~~~~~fDL~~~~~ 488 (567)
|.||++++++. +.+.. ....||.++..++|+++.+. +.+|+||+|||++++|||++.++ |+.++++||||++|.
T Consensus 302 y~eAi~~l~~~---g~~~~~~~~~~g~~l~~~~e~~l~~~-~~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~ 377 (456)
T 3m4p_A 302 YADAIKYCNDH---GILNKDKPFEYGEDISEKPERQMTDE-IGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGV 377 (456)
T ss_dssp HHHHHHHHHHH---TCCSSSSCCCTTCCCCHHHHHHHHHH-HTSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTT
T ss_pred HHHHHHHHHHc---CCCccccCcchHHHHHHHHHHHHHHH-hCceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCc
Confidence 99999988654 21111 24578999999999999875 58999999999999999987554 456789999999765
Q ss_pred eEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 489 GELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 489 ~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
+||+||++|++|+++|.+++++.|++++.|+|||++++||+|||||||||||||+|++||++|||||++|||+++||.
T Consensus 378 gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 378 GEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp EEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred eEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.9e-100 Score=822.04 Aligned_cols=421 Identities=31% Similarity=0.529 Sum_probs=374.3
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-----ccccCCCCCcE
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTC 101 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-----~~~~~l~~gs~ 101 (567)
.++++|++|.. ++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++.. +..+.|+.||+
T Consensus 2 ~rt~~~~~l~~------~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITE------ELNGQKVKVAGWVWEVKDLG--GIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDV 71 (438)
T ss_dssp CCSCCGGGCCG------GGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCE
T ss_pred ceEEEHHHcch------hcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCE
Confidence 35677888763 56899999999999999999 7999999999874 9999997641 13457999999
Q ss_pred EEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcC---CChhhhccccccccCcHHHHHHHHHHHHHHHHHHH
Q 008405 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHT 178 (567)
Q Consensus 102 V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~---~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~ 178 (567)
|.|+|+|++++. .+|++||+++++++||+|. .++|++.+. ++.|+++++||||+|++.++++|++||+|++++|+
T Consensus 72 V~V~G~v~~~~~-~~~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~ 149 (438)
T 3nem_A 72 VAVEGVVNFTPK-AKLGFEILPEKIVVLNRAE-TPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRD 149 (438)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEECBC-SSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCC-CCCcEEEEEEEEEEEecCC-CCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999884 4689999999999999986 467877544 67889999999999999999999999999999999
Q ss_pred hhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhh
Q 008405 179 FLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREA 258 (567)
Q Consensus 179 fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
||.++||+||+||+|++++||||++.|++
T Consensus 150 f~~~~gF~EVeTPiL~~~~~eg~~~~f~~--------------------------------------------------- 178 (438)
T 3nem_A 150 FFHENGFIEIHTPKIIATATEGGTELFPM--------------------------------------------------- 178 (438)
T ss_dssp HHHHTTCEECCCCSEESSCSSCSSSCCEE---------------------------------------------------
T ss_pred HHHHCCcEEEeCCEEecCCCCCCccceeE---------------------------------------------------
Confidence 99999999999999999999999987654
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCC
Q 008405 259 ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSH 337 (567)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~ 337 (567)
+||++++||+||||||||++ ++|++||||||||||||+++
T Consensus 179 ---------------------------------------~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~ 219 (438)
T 3nem_A 179 ---------------------------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHN 219 (438)
T ss_dssp ---------------------------------------EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSC
T ss_pred ---------------------------------------eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCC
Confidence 37889999999999999986 58899999999999999999
Q ss_pred CCCCccccccceeeeccCC-HHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHH
Q 008405 338 TSRHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE 416 (567)
Q Consensus 338 t~rHlpEFtmLE~e~a~~d-~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~ 416 (567)
++||||||||||||++|.| ++++|+++|+||+++++.+.+.+..++++++..+ ..++.||+||||.||++
T Consensus 220 t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l---------~~~~~pf~rity~eai~ 290 (438)
T 3nem_A 220 TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL---------EEPKLPFPRVSYDKALE 290 (438)
T ss_dssp CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCC---------CCCCSSCCEEEHHHHHH
T ss_pred CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhccccc---------ccCCCCceEEEHHHHHH
Confidence 8999999999999999999 9999999999999999999988766666554432 12467999999999999
Q ss_pred HHHHHHHcCcccccccccccccchhHHhhhccccc----cCcEEEecCCCCCccccccccC-CcceEEEEEeeeCCeeEe
Q 008405 417 LLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKF----QKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPKVGEL 491 (567)
Q Consensus 417 ~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~----~~p~fI~~yP~~~~pf~~~~~~-d~~~~~~fDL~~~~~~El 491 (567)
+++.. + ....||.|++.++|++|++.+. .+|+||+|||.+++|||++.++ ++.++++||||++ |+||
T Consensus 291 ~l~~~---g----~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~-G~Ei 362 (438)
T 3nem_A 291 ILGDL---G----KEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYR-GVEI 362 (438)
T ss_dssp HHHHT---T----CCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEET-TEEE
T ss_pred HHHHc---C----CCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEEC-CEEE
Confidence 88643 2 2356888999999998876543 7899999999999999887554 5678999999996 5899
Q ss_pred ecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 492 IGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 492 ~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
+||++|++|+++|.+++++.|++++.|+|||+|++||||||||||||||||+|++||.+|||||++|||+++||.
T Consensus 363 ~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~ 437 (438)
T 3nem_A 363 SSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437 (438)
T ss_dssp EEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCC
T ss_pred EeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=1.8e-98 Score=819.38 Aligned_cols=447 Identities=28% Similarity=0.436 Sum_probs=368.6
Q ss_pred CCCCcccccccccCCccccc--ccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCce
Q 008405 3 DNELPVDQVATMDLNDDAVQ--RHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPAN 80 (567)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~ 80 (567)
.+..+.+-||.+||+ ++| +..-..++.|+++. .++.|++|+|+|||+++|.+| +++|++|||+++ +
T Consensus 24 ~~~~~~~~yg~~~~~--~~~~~~~~~~~~~~i~~l~------~~~~g~~V~v~Gwv~~~R~~g--kl~Fi~LrD~~g--~ 91 (548)
T 3i7f_A 24 PELVSGENFKVMPMH--QSQPCYKTGLKYTEIEELV------PAMAEKTVTIRARVQAVRGKG--NMVFLFLRKGIY--T 91 (548)
T ss_dssp CCCCCCSSEEECCCC--SSCGGGCCCCCBCCGGGCS------GGGTTCEEEEEEEEEEEEECS--SEEEEEEEETTE--E
T ss_pred ccchhhhhcCcCccc--cccccccCCCceEEhhhcc------hhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCe--e
Confidence 345677889999999 555 55556778888876 368899999999999999999 799999999986 5
Q ss_pred eEEEEeCCc------cccccCCCCCcEEEEEeEEeCCCCC----CcceeEEEEeEEEEecCCCCCCCCCCCc--------
Q 008405 81 LQVIVDKDV------ADLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKT-------- 142 (567)
Q Consensus 81 iQvv~~~~~------~~~~~~l~~gs~V~V~G~v~~~~~~----~~~~lEl~~~~i~vls~~~~~~~Pi~~~-------- 142 (567)
||||++++. .++.+.|+.||+|.|+|+|++++.+ ++|++||++++|+|||+|. .++|++.+
T Consensus 92 iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~ 170 (548)
T 3i7f_A 92 CQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAE-YPLPMQIEDLTFPSSV 170 (548)
T ss_dssp EEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCC-BSCSSCSGGGSCCHHH
T ss_pred EEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCC-CCCCCCchhccccccc
Confidence 999998632 1245679999999999999998742 3689999999999999985 46777631
Q ss_pred --------------------------------------------------CCChhhhccccccccCcHHHHHHHHHHHHH
Q 008405 143 --------------------------------------------------KLTLEFLRDRIPFRPRTNTIAAVARIRNAL 172 (567)
Q Consensus 143 --------------------------------------------------~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i 172 (567)
..+.+++.++||||+|++.++++|++||+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i 250 (548)
T 3i7f_A 171 FKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSAC 250 (548)
T ss_dssp HHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHH
Confidence 124566678999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhcc
Q 008405 173 AYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSD 252 (567)
Q Consensus 173 ~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (567)
+++||+||.++||+||+||+|++++|||+++.|.+
T Consensus 251 ~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--------------------------------------------- 285 (548)
T 3i7f_A 251 CGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--------------------------------------------- 285 (548)
T ss_dssp HHHHHHHHHHTTCEECCCCSBC----------------------------------------------------------
T ss_pred HHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE---------------------------------------------
Confidence 99999999999999999999999999988876643
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEeccc
Q 008405 253 KAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTF 331 (567)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~F 331 (567)
+||++++||+||||||||++ ++|++|||||||||
T Consensus 286 ---------------------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~F 320 (548)
T 3i7f_A 286 ---------------------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVF 320 (548)
T ss_dssp ---------------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEEC
T ss_pred ---------------------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeE
Confidence 47888999999999999985 67899999999999
Q ss_pred ccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceec
Q 008405 332 RAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410 (567)
Q Consensus 332 R~E~~~t~rHlpEFtmLE~e~a~~-d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rit 410 (567)
|||+++++||||||||||||++|. |++++|+++|+||++++..+.+.|..++..+...++...+. . .||+|||
T Consensus 321 R~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~-----~-~pf~rit 394 (548)
T 3i7f_A 321 RAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLI-----Y-RPFLRLT 394 (548)
T ss_dssp CCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCC-----C-CSCEEEE
T ss_pred ecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCccccc-----c-CCcceeE
Confidence 999999999999999999999998 79999999999999999999887766666655444321111 2 7999999
Q ss_pred HHHHHHHHHHHHHcCcccccccccccccchhHHhhhccc---cccCc-EEEecCCCCCcccccccc-CCcceEEEEEeee
Q 008405 411 YTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEV---KFQKP-VIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLV 485 (567)
Q Consensus 411 y~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~---~~~~p-~fI~~yP~~~~pf~~~~~-~d~~~~~~fDL~~ 485 (567)
|.||++++++. + ....|+.|++.++|++|++. .++.| +||+|||.+++|||++.+ +++.++++||||+
T Consensus 395 ~~eai~~l~~~---g----~~~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i 467 (548)
T 3i7f_A 395 YKEAIEMLRAS---G----ETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFV 467 (548)
T ss_dssp HHHHHHHHHHT---T----CCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEE
T ss_pred HHHHHHHHHHc---C----CCCCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEE
Confidence 99999998653 2 12457788999999888753 34555 567899999999998754 5677899999999
Q ss_pred CCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCC
Q 008405 486 PKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 565 (567)
Q Consensus 486 ~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~ 565 (567)
+ |+||+||++|++|+++|.+++++.|++++.|+|||+|++||||||||||||||||+||+||++|||||++|||+++||
T Consensus 468 ~-G~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl 546 (548)
T 3i7f_A 468 R-GQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRL 546 (548)
T ss_dssp T-TEEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBC
T ss_pred C-CEEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCC
Confidence 6 589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 008405 566 D 566 (567)
Q Consensus 566 ~ 566 (567)
.
T Consensus 547 ~ 547 (548)
T 3i7f_A 547 N 547 (548)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.2e-98 Score=807.84 Aligned_cols=425 Identities=32% Similarity=0.561 Sum_probs=360.9
Q ss_pred eehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc-cc-cCCCCCcEEEEEeEE
Q 008405 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LG-QLVPTGTCVYVEGML 108 (567)
Q Consensus 31 ~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~-~~-~~l~~gs~V~V~G~v 108 (567)
+|+++. ++.|++|+|+|||+++|.+|| +++|++|||++|. ||||++++... +. ..|+.||+|.|+|+|
T Consensus 2 ~i~~~~-------~~~~~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v 71 (435)
T 2xgt_A 2 KIRDLV-------KHRNERVCIKGWIHRMRRQGK-SLMFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAI 71 (435)
T ss_dssp CGGGGG-------GGTTSEEEEEEEEEEEEECTT-SEEEEEEECSSCE--EEEEEEGGGGSSHHHHHCCTTCEEEEEEEE
T ss_pred chhhhh-------hcCCCEEEEEEEEEEecccCC-CcEEEEEEECCce--EEEEECCcchhHHHHhcCCCCCEEEEEEEE
Confidence 466664 468999999999999999986 4999999999975 99999854321 11 258999999999999
Q ss_pred eCCCCC--CcceeEEEEeEEEEecCCCC-CCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 008405 109 KNPPEG--TKQKIELRVQKVVDVGMVDP-AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 185 (567)
Q Consensus 109 ~~~~~~--~~~~lEl~~~~i~vls~~~~-~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF 185 (567)
++++.+ ++|++||+++++++|+++.| ..+|++++.++.|+++++||||+|++.++++|++||+|++++|+||+++||
T Consensus 72 ~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gF 151 (435)
T 2xgt_A 72 KEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGY 151 (435)
T ss_dssp EECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 997742 45899999999999997532 136777777888999999999999999999999999999999999999999
Q ss_pred EEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHH
Q 008405 186 LYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTE 265 (567)
Q Consensus 186 ~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (567)
+|||||+|++++||||++.|.+
T Consensus 152 lEVeTPiL~~s~~eG~~~~F~~---------------------------------------------------------- 173 (435)
T 2xgt_A 152 VEVAPPTLVQTQVEGGSTLFNL---------------------------------------------------------- 173 (435)
T ss_dssp EECCCCSEESCCSSCTTSCCEE----------------------------------------------------------
T ss_pred EEEECCeEeeccCCCchhceee----------------------------------------------------------
Confidence 9999999999999998876643
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCcccc
Q 008405 266 LTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEF 345 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlpEF 345 (567)
+|||+++||+||||||||++++|++||||||||||||+++++||+|||
T Consensus 174 --------------------------------~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EF 221 (435)
T 2xgt_A 174 --------------------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEY 221 (435)
T ss_dssp --------------------------------EETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEE
T ss_pred --------------------------------ccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccce
Confidence 478999999999999999987889999999999999999989999999
Q ss_pred ccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCccc--chhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHH
Q 008405 346 WMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDD--MEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVK 423 (567)
Q Consensus 346 tmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~ 423 (567)
||||||++|+|++++|+++|+||+++++.+.+.+... +..+...+ .....||+||||.||++++.+...
T Consensus 222 T~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~pf~rity~ea~~~~~~~~~ 292 (435)
T 2xgt_A 222 AHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKF---------QPPERPFLRMEYKDAIKWLQEHNV 292 (435)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTC---------CCCCSSCEEEEHHHHHHHHHHTTC
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccccc---------cccCCCceEEEHHHHHHHHHhcCC
Confidence 9999999999999999999999999999987654210 11111100 013469999999999998865311
Q ss_pred cCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccC-CcceEEEEEeeeCCeeEeecchhhhhcHH
Q 008405 424 EGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPKVGELIGGSQREERYD 502 (567)
Q Consensus 424 ~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~-d~~~~~~fDL~~~~~~El~~G~~r~~~~~ 502 (567)
. ........||.++...+|++|.+. +.+|+||+|||.+++|||++.++ ++.++++||||+||.+||+||++|+||++
T Consensus 293 ~-~~~~~~~~~g~~l~~~~e~~l~~~-~~~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~ 370 (435)
T 2xgt_A 293 E-NEFGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFD 370 (435)
T ss_dssp B-CTTSCBCCTTSCCCHHHHHHHHHH-HTSCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHH
T ss_pred C-cccccccchhhHHHHHHHHHHHHh-cCCcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHH
Confidence 1 111123568889999999998764 48899999999999999988654 46688999999976579999999999999
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 503 VIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 503 ~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
+|.+++++.|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 371 ~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~ 434 (435)
T 2xgt_A 371 ELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCV 434 (435)
T ss_dssp HHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999995
No 5
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.9e-96 Score=785.13 Aligned_cols=420 Identities=27% Similarity=0.486 Sum_probs=372.3
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc--cccCCCCCcEEEEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVE 105 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~--~~~~l~~gs~V~V~ 105 (567)
++++|++|.. ++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++... ..+.|+.||+|.|+
T Consensus 3 ~~~~~~~l~~------~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTP------EYDGKEVIWAGWVHLLRDLG--GKKFIILRDKTGL--GQVVVDKNSSAFGISQELTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCG------GGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEE
T ss_pred eEEEHHHhhH------HhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChHHHHHHHhCCCCCEEEEE
Confidence 4566777753 57899999999999999999 7999999999875 99999875422 23579999999999
Q ss_pred eEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcC---CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhc
Q 008405 106 GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQK 182 (567)
Q Consensus 106 G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~---~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~ 182 (567)
|+|.+++. .+|++||+++++++||+|. .++|++.++ ++.|+++++||||+|++.++++|++||+|++++|+||.+
T Consensus 73 G~v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~ 150 (429)
T 1wyd_A 73 GIVKADKR-APRGIELHAEEITLLSKAK-APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYK 150 (429)
T ss_dssp EEEEECSS-SGGGEEEEEEEEEEEECCC-SSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCC-CCccEEEEEeEEEEeccCC-CCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999984 4689999999999999984 578887665 778999999999999999999999999999999999999
Q ss_pred CCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhh
Q 008405 183 QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISAS 262 (567)
Q Consensus 183 ~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (567)
+||+||+||+|+++++|||+++|.+
T Consensus 151 ~gF~eV~TP~l~~~~~e~~~~~f~~------------------------------------------------------- 175 (429)
T 1wyd_A 151 EGFIEIFTPKIIASATEGGAQLFPV------------------------------------------------------- 175 (429)
T ss_dssp TTCEECCCCSEESSCSSTTCCCCEE-------------------------------------------------------
T ss_pred CCCEEEECCEEEeeCCCCCceeEEE-------------------------------------------------------
Confidence 9999999999999999999987644
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCc
Q 008405 263 VTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHL 342 (567)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHl 342 (567)
+||++++||.||||+|+|+++++++||||||||||+|++++.||+
T Consensus 176 -----------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~ 220 (429)
T 1wyd_A 176 -----------------------------------IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHL 220 (429)
T ss_dssp -----------------------------------EETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCC
T ss_pred -----------------------------------ecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCcccccc
Confidence 378889999999999999988899999999999999999888999
Q ss_pred cccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHH
Q 008405 343 AEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAV 422 (567)
Q Consensus 343 pEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~ 422 (567)
|||||||||++|.|+.++|+++|+|++++++.+.+++..++++++...+ .++.||+||||.||++++.+.
T Consensus 221 pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~---------~l~~pf~rity~eA~~~~~~~- 290 (429)
T 1wyd_A 221 AEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKIPIKRLKYTEAIEILRSK- 290 (429)
T ss_dssp SEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCC---------CCCSSCEEEEHHHHHHHHHHS-
T ss_pred ceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccc---------cCCCCccEEEHHHHHHHHHhc-
Confidence 9999999999999999999999999999999998877666666544221 135799999999999998542
Q ss_pred HcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccC-CcceEEEEEeeeCCeeEeecchhhhhcH
Q 008405 423 KEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPKVGELIGGSQREERY 501 (567)
Q Consensus 423 ~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~-d~~~~~~fDL~~~~~~El~~G~~r~~~~ 501 (567)
+ ....||.++..++|++|.+.+..+|+||+|||..++|||++.++ ++.++++||||+|| .||+||++|+||+
T Consensus 291 --g----~~~~~~~~l~~~~e~~l~~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G-~Ei~~G~~r~~d~ 363 (429)
T 1wyd_A 291 --G----YNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKF-LEIVSGSTRNHKR 363 (429)
T ss_dssp --S----CCCCTTSCCCHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETT-EEEEEEEEBCCCH
T ss_pred --C----CCcccCcccCcHHHHHHHHHhccCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECC-EEEEeCeeeeCCH
Confidence 2 12567888999999998875544799999999999999887554 45588999999964 5999999999999
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 502 DVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 502 ~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
++|.+++++.|++++.|+|||+|++||+|||||||||||||+|+|+|.+|||||++|||+++||.
T Consensus 364 ~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~ 428 (429)
T 1wyd_A 364 EVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428 (429)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999996
No 6
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=3e-95 Score=779.55 Aligned_cols=410 Identities=27% Similarity=0.434 Sum_probs=313.7
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCC-CCcEEEEEeE
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP-TGTCVYVEGM 107 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~-~gs~V~V~G~ 107 (567)
+++|++|. ++.|++|+|+|||+++|.+| +++|++|||++|. ||||+++ +.|+ .||+|.|+|+
T Consensus 2 ~~~~~~l~-------~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~------~~l~~~~~~v~v~G~ 64 (422)
T 1n9w_A 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLG--RIQFLLLRDRSGV--VQVVTGG------LKLPLPESALRVRGL 64 (422)
T ss_dssp BCCGGGGG-------GCTTSEEEEEEEEEEEEECS--SEEEEEEEETTEE--EEEEEES------CCCCCTTCEEEEEEE
T ss_pred eEEHHHHH-------hcCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEEc------cccCCCCCEEEEEEE
Confidence 46677765 46799999999999999999 7999999999875 9999986 4688 9999999999
Q ss_pred EeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcC----CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcC
Q 008405 108 LKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK----LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183 (567)
Q Consensus 108 v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~----~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~ 183 (567)
|.+++. .+|++||+++++++||+|. .++|++.++ ++.|+++++||||+|++.++++|++||+|++++|+||.++
T Consensus 65 v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 65 VVENAK-APGGLEVQAKEVEVLSPAL-EPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEECTT-STTSEEEEEEEEEEEECCC-SCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCC-CCccEEEEEeEEEEeccCC-cCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999985 4689999999999999985 478887665 6788889999999999999999999999999999999999
Q ss_pred CcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhH
Q 008405 184 GFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASV 263 (567)
Q Consensus 184 gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (567)
||+||+||+|+++++|||+++|.+
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~-------------------------------------------------------- 166 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV-------------------------------------------------------- 166 (422)
T ss_dssp TCEECCCC------------------------------------------------------------------------
T ss_pred CCEEEECCEEEEeCCCCCceeEEE--------------------------------------------------------
Confidence 999999999999999999886633
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCCCcc
Q 008405 264 TELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~rHlp 343 (567)
+||++++||.+|||+|+|+++++++||||||||||+|++++.||+|
T Consensus 167 ----------------------------------~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~p 212 (422)
T 1n9w_A 167 ----------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLN 212 (422)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHSEEEEEEEC-------------
T ss_pred ----------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccc
Confidence 3678889999999999999878899999999999999998889999
Q ss_pred ccccceeeeccC-CHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHH
Q 008405 344 EFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAV 422 (567)
Q Consensus 344 EFtmLE~e~a~~-d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~ 422 (567)
||||||||++|. |++++|+++|+|++++++.+.+++..++++++...+ ....||+||||.||++.+.+.
T Consensus 213 EFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~---------~~~~pf~rity~eA~~~~~~~- 282 (422)
T 1n9w_A 213 EYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFPQDIPRLTHAEAKRILKEE- 282 (422)
T ss_dssp CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC---------CCSSSCCEEEHHHHHHHHHHT-
T ss_pred eeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc---------ccCCCcceeEHHHHHHHHHhc-
Confidence 999999999999 999999999999999999998877666666543221 122699999999999998642
Q ss_pred HcCcccccccccccccchhHHhhhccccc----cCcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhh
Q 008405 423 KEGKHFENKVEWGIDLASEHERYLTEVKF----QKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQRE 498 (567)
Q Consensus 423 ~~~~~~~~~~~~g~dl~~~~e~~L~e~~~----~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~ 498 (567)
+ ...||.++..++|++|.+.+. .+|+||+|||..++|||++.+++ .++++||||+| |.||+||++|+
T Consensus 283 --~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~-G~Ei~~G~~r~ 353 (422)
T 1n9w_A 283 --L-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFR-GLEITSGGQRI 353 (422)
T ss_dssp --S-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEET-TEEEEEEEEBC
T ss_pred --C-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEEC-CEEEEeCEeec
Confidence 1 256788898889988876542 27999999999999999987766 78899999996 55999999999
Q ss_pred hcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 499 ERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
||+++|.+++++.|++++.|+|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 354 ~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~ 421 (422)
T 1n9w_A 354 HRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421 (422)
T ss_dssp CCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC-------
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 7
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=7.1e-94 Score=781.55 Aligned_cols=447 Identities=26% Similarity=0.410 Sum_probs=375.9
Q ss_pred ccccccccCCccccc--ccccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEE
Q 008405 8 VDQVATMDLNDDAVQ--RHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV 85 (567)
Q Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~ 85 (567)
.+.||.+||+ ++| ..+.+++++|+++.. ..+.|++|+|+|||+++|.+||. ++|++|||++| .||||+
T Consensus 2 ~~~yG~~~~~--~s~~~~~~~~~~~~~~~l~~-----~~~~g~~V~v~GwV~~~R~~g~~-l~Fi~LrD~~g--~iQvv~ 71 (487)
T 1eov_A 2 KDNYGKLPLI--QSRDSDRTGQKRVKFVDLDE-----AKDSDKEVLFRARVHNTRQQGAT-LAFLTLRQQAS--LIQGLV 71 (487)
T ss_dssp CSSEEECCCC--CCCGGGCCCCCCCCGGGCCT-----TTTTTCEEEEEEEEEEEEECSSS-EEEEEEEETTE--EEEEEE
T ss_pred Cccccccccc--ccccccccccceeEHHHhcc-----cccCCCEEEEEEEEEEeeccCCc-cEEEEEEECCc--cEEEEE
Confidence 3569999998 444 345567788888763 12789999999999999999931 49999999986 499999
Q ss_pred eCC----cc----ccccCCCCCcEEEEEeEEeCCCCC----CcceeEEEEeEEEEecCCCCCCCCCCCc-----------
Q 008405 86 DKD----VA----DLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKT----------- 142 (567)
Q Consensus 86 ~~~----~~----~~~~~l~~gs~V~V~G~v~~~~~~----~~~~lEl~~~~i~vls~~~~~~~Pi~~~----------- 142 (567)
+++ .. ++.+.|+.||+|.|+|+|.+++.+ ++|++||++++|+|||+|. .++|++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~-~~lP~~~~~~~~~~~~~~~ 150 (487)
T 1eov_A 72 KANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP-EALPILLEDASRSEAEAEA 150 (487)
T ss_dssp ECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCC-SSCSSCHHHHTSCHHHHHH
T ss_pred eccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeeccc-ccCCcchhhcccccccccc
Confidence 865 11 134579999999999999999842 4589999999999999986 46777532
Q ss_pred ----CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhh
Q 008405 143 ----KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLE 218 (567)
Q Consensus 143 ----~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~ 218 (567)
..+.|+++++||||+|++.++++|++||.|++++|+||.++||+||+||+|+++++||+++.|.+
T Consensus 151 ~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~----------- 219 (487)
T 1eov_A 151 AGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV----------- 219 (487)
T ss_dssp TTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE-----------
T ss_pred cccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee-----------
Confidence 14567788899999999999999999999999999999999999999999999989988887754
Q ss_pred hhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchh
Q 008405 219 KELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQD 298 (567)
Q Consensus 219 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~ 298 (567)
+
T Consensus 220 -------------------------------------------------------------------------------~ 220 (487)
T 1eov_A 220 -------------------------------------------------------------------------------T 220 (487)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred ccCccceeecchhhhHHHH-hhcCCcEEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHhh
Q 008405 299 FFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLL 376 (567)
Q Consensus 299 yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~-d~~~lm~~~E~li~~l~~~~~ 376 (567)
|||+++||.||||+|+|++ +++++||||||||||||+++++||+|||||||||++|. +++++|+++|+||+++++.+.
T Consensus 221 ~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~ 300 (487)
T 1eov_A 221 YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELP 300 (487)
T ss_dssp ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999996 67899999999999999999899999999999999997 699999999999999999998
Q ss_pred hcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhcccc---c-c
Q 008405 377 DHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVK---F-Q 452 (567)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~---~-~ 452 (567)
+.+..++..+...++...++. ....||++++|.||+++++.. + ....++.++..++|+.|++.. + .
T Consensus 301 ~~~~~~l~~~~~~~~~~~~~~---~~~~~~~ri~~~ea~~~l~~~---g----~~~~~~~d~~~~~e~~l~~~~~~~~~~ 370 (487)
T 1eov_A 301 KRFAHEIELVRKQYPVEEFKL---PKDGKMVRLTYKEGIEMLRAA---G----KEIGDFEDLSTENEKFLGKLVRDKYDT 370 (487)
T ss_dssp HHCHHHHHHHHHHSCCCCCCC---CTTCCCEEEEHHHHHHHHHHT---T----CCCCTTCCCCHHHHHHHHHHHHHHSCC
T ss_pred hhchhHHHhhhhhcCCcceec---ccCCCeeEEEHHHHHHHHHHh---C----CCCCcccchhhHHHHHHHHHHHHHhCC
Confidence 877655555444333211111 112489999999999987542 2 124566678888888876432 2 3
Q ss_pred CcEEEecCCCCCcccccc-ccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCC--CcHHHHHHhhcCC
Q 008405 453 KPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE--PYEWYLDLRRFGT 529 (567)
Q Consensus 453 ~p~fI~~yP~~~~pf~~~-~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~--~~~~yl~a~~~G~ 529 (567)
.|+||+|||..++|||++ .++|+.++++||||+| |+||+|||+|+||+++|.+++++.|++++ .++|||+|++||+
T Consensus 371 ~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~-G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~ 449 (487)
T 1eov_A 371 DFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMR-GEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 449 (487)
T ss_dssp SEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCC
T ss_pred CCEEEECCccccChhhcCcCCCCCCeEEEEEEEeC-CEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCC
Confidence 478999999999999755 4556678999999996 57999999999999999999999999988 8999999999999
Q ss_pred CCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 530 VKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 530 PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
|||||||||||||+|+|||.+||||||+|||+++||.
T Consensus 450 PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~~r~~ 486 (487)
T 1eov_A 450 PPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 486 (487)
T ss_dssp CCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCC
T ss_pred CCCeEEEEhHHHHHHHHcCCCcHHheeecCCCCCCCC
Confidence 9999999999999999999999999999999999996
No 8
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=7.8e-94 Score=771.64 Aligned_cols=422 Identities=38% Similarity=0.678 Sum_probs=373.6
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc---c--ccccCCCCCcEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---A--DLGQLVPTGTCV 102 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~---~--~~~~~l~~gs~V 102 (567)
++++|++|.. ++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++. . +..+.|+.||+|
T Consensus 3 ~~~~~~~l~~------~~~~~~V~v~G~v~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVG--KKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSV 72 (434)
T ss_dssp CCCCGGGCCG------GGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHTCCTTCEE
T ss_pred eEEEHHHhhH------HhCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhcCCCCCEE
Confidence 4677888763 57899999999999999999 7999999999875 999997542 1 123579999999
Q ss_pred EEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCC--CCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHhh
Q 008405 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI--PKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFL 180 (567)
Q Consensus 103 ~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi--~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl 180 (567)
.|+|+|.+++. .+|++||+++++++||+| .++|+ +.+.++.|+++++||||+|++.++++|++||.|++.+|+||
T Consensus 73 ~v~G~v~~~~~-~~~~~el~~~~~~vl~~~--~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f 149 (434)
T 1x54_A 73 IVEGIVKADER-APGGAEVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWL 149 (434)
T ss_dssp EEEEEEEECTT-SGGGEEEEEEEEEEEECC--SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC-CCccEEEEEeEEEEeecC--CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999984 468999999999999998 46787 66667889999999999999999999999999999999999
Q ss_pred hcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhh
Q 008405 181 QKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAIS 260 (567)
Q Consensus 181 ~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
.++||+||+||+|+++++|||+++|.+
T Consensus 150 ~~~gF~eVeTP~l~~~~~e~~~~~f~~----------------------------------------------------- 176 (434)
T 1x54_A 150 LKDGWHEVFPPILVTGAVEGGATLFKL----------------------------------------------------- 176 (434)
T ss_dssp HHTTCEECCCCSEESCCSSCGGGCCEE-----------------------------------------------------
T ss_pred HHCCCEEEeCcEEEeecCCCCceeEEE-----------------------------------------------------
Confidence 999999999999999999999887643
Q ss_pred hhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHHhhcCCcEEEEecccccCCCCCCC
Q 008405 261 ASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSR 340 (567)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~~~~~~rVFeI~~~FR~E~~~t~r 340 (567)
+||++++||.+|||+|+|+++++++|||+||||||+|++++.|
T Consensus 177 -------------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~R 219 (434)
T 1x54_A 177 -------------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRR 219 (434)
T ss_dssp -------------------------------------EETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSS
T ss_pred -------------------------------------eecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcc
Confidence 3788899999999999999878899999999999999998889
Q ss_pred CccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHH
Q 008405 341 HLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEV 420 (567)
Q Consensus 341 HlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~ 420 (567)
|+|||||||||++|.|+.++|+++|+|++.+++.+.+++..++++++..++ .+. .++.||+|+||.||++++.+
T Consensus 220 H~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~-----~~~-~~~~pf~rity~ea~~~~~~ 293 (434)
T 1x54_A 220 HLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT-----TLK-NTEPPFPRISYDEAIDILQS 293 (434)
T ss_dssp CCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH-----HHH-TCCSSCCEEEHHHHHHHHHH
T ss_pred cccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc-----ccc-ccCCCCcEEEHHHHHHHHHh
Confidence 999999999999999999999999999999999999887767766554321 111 14679999999999999864
Q ss_pred HHHcCcccccccccccccchhHHhhhccccccCcEEEecCCCCCccccccccC-CcceEEEEEeeeC-CeeEeecchhhh
Q 008405 421 AVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVP-KVGELIGGSQRE 498 (567)
Q Consensus 421 ~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~~~~-d~~~~~~fDL~~~-~~~El~~G~~r~ 498 (567)
. + ...+||.++..++|++|.+. +.+|+||+|||..++|||++.++ ++.++++||||+| |.+||+||++|+
T Consensus 294 ~---g----~~~~~~~dl~~~~e~~l~~~-~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~ 365 (434)
T 1x54_A 294 K---G----VNVEWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQRE 365 (434)
T ss_dssp T---T----CCCCTTCCCCHHHHHHHHTT-CSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBC
T ss_pred c---C----CCcccCCccChHHHHHHHHH-hCCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEee
Confidence 2 2 12567888999999998775 47899999999999999887554 4568999999998 667999999999
Q ss_pred hcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008405 499 ERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566 (567)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~ 566 (567)
+|+++|.+++++.|++++.|+|||+|++||+|||||||||||||+|+++|.+|||||++||++++||.
T Consensus 366 ~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~ 433 (434)
T 1x54_A 366 DDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433 (434)
T ss_dssp CCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCC
T ss_pred CCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 9
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-92 Score=775.38 Aligned_cols=443 Identities=17% Similarity=0.239 Sum_probs=356.1
Q ss_pred CcccccccccccceeehhhccC-CCC--CCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc---
Q 008405 17 NDDAVQRHQFSDRVLIKSILTR-PDG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--- 90 (567)
Q Consensus 17 ~~~~~~~~~~~~r~~i~~i~~~-~~~--~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--- 90 (567)
..+.|++ .|..+++++++... .++ +....|++|+|+|||+++|.+||| ++|++|||++| .||||++++..
T Consensus 23 g~~pyp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk-~~F~~LrD~sg--~iQvv~~~~~~~~~ 98 (521)
T 3bju_A 23 GEDPYPH-KFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGK-LIFYDLRGEGV--KLQVMANSRNYKSE 98 (521)
T ss_dssp TCCSSCS-CCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSS-EEEEEEEETTE--EEEEEEEGGGSSCH
T ss_pred CCCCCCC-cCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCC-cEEEEEEECCE--EEEEEEECCccCCH
Confidence 3446653 47889999998652 111 234468899999999999999974 99999999985 59999986531
Q ss_pred -cc---ccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCc-CCChhhhccccccccC-cHHHHH
Q 008405 91 -DL---GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPR-TNTIAA 164 (567)
Q Consensus 91 -~~---~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~-~~~~e~lr~~~~Lr~R-~~~~~~ 164 (567)
.+ .+.|+.||+|.|+|+|.+++. |++||++++|++||+|. .++|.... ..+.|++.++||||+| ++..++
T Consensus 99 ~~~~~~~~~l~~gd~V~V~G~v~~t~~---ge~ei~~~~i~~l~~~~-~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~ 174 (521)
T 3bju_A 99 EEFIHINNKLRRGDIIGVQGNPGKTKK---GELSIIPYEITLLSPCL-HMLPHLHFGLKDKETRYRQRYLDLILNDFVRQ 174 (521)
T ss_dssp HHHHHHHHHCCTTCEEEEEEEEEECTT---CCEEEEEEEEEEEECCC-SCCCCC----CCHHHHHHCHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEEEEecCC---CCEEEEEeEEEEeecCC-CCCCCccccccChhhhhhhhhhhHhcCHHHHH
Confidence 22 246899999999999999984 69999999999999985 34554432 2456777789999999 799999
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCC-ccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhh
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG-EMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKG 243 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~-e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (567)
+|++||+|+++||+||.++||+||+||+|+++ +|||+ ++|.+.+
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~-~gGa~a~~F~t~~---------------------------------- 219 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNII-PGGAVAKPFITYH---------------------------------- 219 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS-CCSSSCCCCEEEE----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeecc-CCCccccceeeec----------------------------------
Confidence 99999999999999999999999999999976 56664 5563321
Q ss_pred hHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCC
Q 008405 244 EAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVS 322 (567)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~ 322 (567)
+||++++||.||||||||++ ++|++
T Consensus 220 ------------------------------------------------------~~~~~~~yL~~SpqL~lk~liv~g~~ 245 (521)
T 3bju_A 220 ------------------------------------------------------NELDMNLYMRIAPELYHKMLVVGGID 245 (521)
T ss_dssp ------------------------------------------------------TTTTEEEEECSCSHHHHHHHHHTTCC
T ss_pred ------------------------------------------------------ccCCcceEeeCCHHHHHHHHHhcCcC
Confidence 37899999999999999985 67899
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhcc
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 402 (567)
||||||||||||++++ ||||||||||||++|+|++++|+++|+||+++++.+.+++ .+.+.....+. ..+...+
T Consensus 246 rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~~d~---~~~~~d~ 319 (521)
T 3bju_A 246 RVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY--KVTYHPDGPEG---QAYDVDF 319 (521)
T ss_dssp EEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSS--EEEECTTCTTS---CCEEEEC
T ss_pred ceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCc--eEEeccccccc---ccceecc
Confidence 9999999999999975 9999999999999999999999999999999999998875 34432221110 1112346
Q ss_pred CCCcceecHHHHHHHHHHHHHc-Cccc--------------------ccccccccccchhHHhhhccccccCcEEEecCC
Q 008405 403 STPFERITYTEAVELLEVAVKE-GKHF--------------------ENKVEWGIDLASEHERYLTEVKFQKPVIVYNYP 461 (567)
Q Consensus 403 ~~pf~rity~eA~~~l~~~~~~-~~~~--------------------~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~yP 461 (567)
..||+|+||.||++.+.+.... +..+ .....||..+...+|+++.+ .+.+|+||+|||
T Consensus 320 ~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~-~l~~P~fI~dyP 398 (521)
T 3bju_A 320 TPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEV-TCINPTFICDHP 398 (521)
T ss_dssp CSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGG-GCCSCEEEECCB
T ss_pred CCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEECCc
Confidence 7899999999999987542100 0000 00112333344456666644 467899999999
Q ss_pred CCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHc------CCCCCC--cHHHHHHhhcCCCCcc
Q 008405 462 KGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM------GLPLEP--YEWYLDLRRFGTVKHS 533 (567)
Q Consensus 462 ~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~------g~~~~~--~~~yl~a~~~G~PP~g 533 (567)
..++||+++.++++.++++||||++ |.||+||++|++|+..|.+++++. |.+++. ++|||+|++|||||||
T Consensus 399 ~~~spla~~~~~dp~~~~rfdL~i~-G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~g 477 (521)
T 3bju_A 399 QIMSPLAKWHRSKEGLTERFELFVM-KKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTA 477 (521)
T ss_dssp GGGCTTBCBCSSSTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEE
T ss_pred cccCcccccCCCCCCeeeeEEEEEc-ceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCce
Confidence 9999998888778889999999995 689999999999999999888654 777665 7999999999999999
Q ss_pred eeeecHHHHHHHHcCCCCccccccccCCCCC
Q 008405 534 GFGLGFERMILFATGIDNIRDVIPFPRYPGR 564 (567)
Q Consensus 534 G~GiGiDRLlMll~g~~nIrdvi~FPr~~~~ 564 (567)
|||||||||+|+|||.+|||||++||+++..
T Consensus 478 G~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 478 GWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp EEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred eEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 9999999999999999999999999999864
No 10
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=1.5e-92 Score=771.77 Aligned_cols=426 Identities=19% Similarity=0.268 Sum_probs=346.9
Q ss_pred ccccceeehhhccC-CCCCCC---CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-----ccccC
Q 008405 25 QFSDRVLIKSILTR-PDGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQL 95 (567)
Q Consensus 25 ~~~~r~~i~~i~~~-~~~~~~---~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-----~~~~~ 95 (567)
.|.+++++.++... .++... ..|++|+|+|||+++|.+| |++|++|||++| .||||++++.. +..+.
T Consensus 60 ~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G--k~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 135 (529)
T 4ex5_A 60 DFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG--KASFATVQDGSG--QIQFFVTPADVGAETYDAFKK 135 (529)
T ss_dssp CCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT
T ss_pred CCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC--CeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc
Confidence 46778888888752 111110 1278999999999999999 799999999996 59999987531 12356
Q ss_pred CCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHHHHHHHHHH
Q 008405 96 VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIRNA 171 (567)
Q Consensus 96 l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~~i~r~Rs~ 171 (567)
|+.||+|.|+|+|.+++. |++||.+++|+|||+|. .|+|.+.++ .|++.++||||+| ++..+++|++||+
T Consensus 136 l~~gd~V~V~G~v~~t~~---gelel~~~~i~vLs~a~---~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~ 209 (529)
T 4ex5_A 136 WDLGDIVAARGVLFRTNK---GELSVKCTQLRLLAKAL---RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTK 209 (529)
T ss_dssp CCTTCEEEEEEEEEECTT---SCEEEEEEEEEEEECCS---SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEEcCC---CcEEEEEEEEEEEecCC---CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 999999999999999874 69999999999999974 566666544 4667788999997 7899999999999
Q ss_pred HHHHHHHhhhcCCcEEEecCeeecCCCCCCCc-cceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhh
Q 008405 172 LAYATHTFLQKQGFLYIHTPIITTSDCEGAGE-MFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLK 250 (567)
Q Consensus 172 i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~e-~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (567)
|+++||+||+++||+||+||+|+++ +|||+. +|.+ .
T Consensus 210 i~~~iR~ff~~~gFlEVeTPiL~~~-~gGA~a~pF~t--~---------------------------------------- 246 (529)
T 4ex5_A 210 AIASIRKFMGDADFMEVETPMLHPI-PGGAAAKPFVT--H---------------------------------------- 246 (529)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESS-CCSSSSCCCEE--E----------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEeCCeeecc-CCCCccccccc--c----------------------------------------
Confidence 9999999999999999999999976 677754 4532 1
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCCcEEEEec
Q 008405 251 SDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGP 329 (567)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~rVFeI~~ 329 (567)
.+||+.++||.||||||||++ ++|++|||||||
T Consensus 247 ----------------------------------------------~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~ 280 (529)
T 4ex5_A 247 ----------------------------------------------HNALDMEMFLRIAPELYLKRLIVGGFERVFEINR 280 (529)
T ss_dssp ----------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEE
T ss_pred ----------------------------------------------cccCCcceecccCHHHHHHHHHhcCCCcEEEeeh
Confidence 136889999999999999985 788999999999
Q ss_pred ccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCccee
Q 008405 330 TFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERI 409 (567)
Q Consensus 330 ~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~ri 409 (567)
|||||+++ .||||||||||||++|+|++++|+++|+||+++++.+.+++ .+.+.+.. ..++.||+||
T Consensus 281 ~FR~E~~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~----------id~~~pf~Ri 347 (529)
T 4ex5_A 281 NFRNEGVS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGRE----------LDLAQPFHRL 347 (529)
T ss_dssp EECCSCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTEE----------EETTSCCEEE
T ss_pred heecCCCC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCcee----------eccCCCceEE
Confidence 99999996 79999999999999999999999999999999999998865 34443221 2367899999
Q ss_pred cHHHHHHHHHH-HH----H---------cCccccccc----cccc-ccchhHHhhhccccccCcEEEecCCCCCcccccc
Q 008405 410 TYTEAVELLEV-AV----K---------EGKHFENKV----EWGI-DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR 470 (567)
Q Consensus 410 ty~eA~~~l~~-~~----~---------~~~~~~~~~----~~g~-dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~~~ 470 (567)
||.||++.+.+ .. . ....+.... .|+. ++..+++..++|+.+.+|+||+|||.+++|||++
T Consensus 348 ty~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~~splak~ 427 (529)
T 4ex5_A 348 TITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARE 427 (529)
T ss_dssp EHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSCEEEEEEEGGGCTTBCB
T ss_pred EHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCCEEEECCchhhCCCccc
Confidence 99999998754 10 0 000111112 3443 4555566666788889999999999999999887
Q ss_pred ccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH------cCCCCCC--cHHHHHHhhcCCCCcceeeecHHHH
Q 008405 471 LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED------MGLPLEP--YEWYLDLRRFGTVKHSGFGLGFERM 542 (567)
Q Consensus 471 ~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~------~g~~~~~--~~~yl~a~~~G~PP~gG~GiGiDRL 542 (567)
.++++.++++||||++ |.||+||++|++|+++|.+++.+ .|.++.. ++|||+|++||||||||||||||||
T Consensus 428 ~~~~p~~~~rFeL~i~-G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRL 506 (529)
T 4ex5_A 428 SDTVAGITERFELFIT-GREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRL 506 (529)
T ss_dssp CSSSTTEEEEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHH
T ss_pred CCCCCCceEEEEEEEC-CEEEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHH
Confidence 7777889999999996 57999999999999998888753 3544443 3899999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCC
Q 008405 543 ILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 543 lMll~g~~nIrdvi~FPr~~~ 563 (567)
+|+|||.+|||||++||+++.
T Consensus 507 vMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 507 VMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HHHHHTCSSGGGGCSSCCCCC
T ss_pred HHHHcCCCcHHHeecCCccCC
Confidence 999999999999999999874
No 11
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=3.7e-91 Score=772.37 Aligned_cols=416 Identities=21% Similarity=0.332 Sum_probs=338.7
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc--ccccCCCCCcEEEEE
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVYVE 105 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~--~~~~~l~~gs~V~V~ 105 (567)
+++++.++. .++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++.. +..+.|+.||+|.|+
T Consensus 3 rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLR------ETHVGEEVVLEGWVNRRRDLG--GLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCC------GGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEE
T ss_pred cEEEHHHhH------HHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChhHHHHHhcCCCCcEEEEE
Confidence 456677665 367899999999999999999 7999999999864 9999986532 234679999999999
Q ss_pred eEEeCCCCC----CcceeEEEEeEEEEecCCCCCCCCCCC------c-CCChhhhccccccccCcHHHHHHHHHHHHHHH
Q 008405 106 GMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPK------T-KLTLEFLRDRIPFRPRTNTIAAVARIRNALAY 174 (567)
Q Consensus 106 G~v~~~~~~----~~~~lEl~~~~i~vls~~~~~~~Pi~~------~-~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~ 174 (567)
|+|.+++.. ++|++||++++|+|||+|.+.++|+.+ + ..+.+.+.++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 999998521 468999999999999999755677765 3 33445555899999999999999999999999
Q ss_pred HHHHhhhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhcccc
Q 008405 175 ATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKA 254 (567)
Q Consensus 175 ~iR~fl~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (567)
+||+||+++||+|||||+|++++||||++ |.++++.
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~------------------------------------------- 188 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRH------------------------------------------- 188 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTT-------------------------------------------
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccc-------------------------------------------
Confidence 99999999999999999999999999988 8775421
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccc-eeecchhhhHHH-HhhcCCcEEEEecccc
Q 008405 255 GREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA-FLTVSGQLQVET-YACAVSNVYTFGPTFR 332 (567)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~-~L~~S~ql~le~-~~~~~~rVFeI~~~FR 332 (567)
++.+. +|.||||||||+ +++|++||||||||||
T Consensus 189 ---------------------------------------------~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR 223 (580)
T 1l0w_A 189 ---------------------------------------------EPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFR 223 (580)
T ss_dssp ---------------------------------------------STTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred ---------------------------------------------cCCceeECccCHHHHHHHHHHhccCCeEEEeceee
Confidence 11122 599999999998 5788999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcceecHH
Q 008405 333 AEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412 (567)
Q Consensus 333 ~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~ 412 (567)
||+++++ |+||||||||||+|.|++++|+++|+||+++++.+.+. .+..||+||||.
T Consensus 224 ~E~~~~~-r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~----------------------~~~~pf~rity~ 280 (580)
T 1l0w_A 224 DEDLRAD-RQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGV----------------------ELPLPFPRLSYE 280 (580)
T ss_dssp CCCCCSS-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC----------------------CCCSSCCEEEHH
T ss_pred CCCCCCC-cCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------------------ccCCCccEEEHH
Confidence 9999755 55699999999999999999999999999999988642 134689999999
Q ss_pred HHHHHHHHHHH---------------cCccc---------------------------------cc----ccccccc-cc
Q 008405 413 EAVELLEVAVK---------------EGKHF---------------------------------EN----KVEWGID-LA 439 (567)
Q Consensus 413 eA~~~l~~~~~---------------~~~~~---------------------------------~~----~~~~g~d-l~ 439 (567)
||++.|..... ....| .. ...++.+ +.
T Consensus 281 eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 360 (580)
T 1l0w_A 281 EAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFS 360 (580)
T ss_dssp HHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEE
T ss_pred HHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCcccc
Confidence 99998721000 00000 00 0112222 22
Q ss_pred hhHHhh----------------------------------------------hccccccCcEEEecCCCC----------
Q 008405 440 SEHERY----------------------------------------------LTEVKFQKPVIVYNYPKG---------- 463 (567)
Q Consensus 440 ~~~e~~----------------------------------------------L~e~~~~~p~fI~~yP~~---------- 463 (567)
++++++ |+++ ..+|+||+|||..
T Consensus 361 ~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~ 439 (580)
T 1l0w_A 361 GGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWT 439 (580)
T ss_dssp STTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCC
T ss_pred chhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccc
Confidence 222222 2223 4689999999996
Q ss_pred --CccccccccC-------Cc-ce-EEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCC----cHHHHHHhhcC
Q 008405 464 --IKAFYMRLND-------DL-KT-VAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEP----YEWYLDLRRFG 528 (567)
Q Consensus 464 --~~pf~~~~~~-------d~-~~-~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~----~~~yl~a~~~G 528 (567)
++||||+.++ ++ .. +++||||+| |.||+|||+|+||+++|.++|+..|++++. |+|||+|++||
T Consensus 440 a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~-G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG 518 (580)
T 1l0w_A 440 YMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLN-GVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYG 518 (580)
T ss_dssp BSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBT
T ss_pred cccCCccCCCchhhhhhcCCccceeeeEEEEEeC-CEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcC
Confidence 7999998765 34 35 789999996 569999999999999999999999998876 88999999999
Q ss_pred CCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008405 529 TVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 529 ~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
+|||||||||||||+|+|||.+||||||+||++++.+.+
T Consensus 519 ~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~~ 557 (580)
T 1l0w_A 519 APPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDP 557 (580)
T ss_dssp CCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCBT
T ss_pred CCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCcccc
Confidence 999999999999999999999999999999999987753
No 12
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=2e-91 Score=763.19 Aligned_cols=432 Identities=19% Similarity=0.277 Sum_probs=344.9
Q ss_pred ccccccccccceeehhhccC-CCCCC-C--CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc---cc
Q 008405 19 DAVQRHQFSDRVLIKSILTR-PDGGA-G--LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---AD 91 (567)
Q Consensus 19 ~~~~~~~~~~r~~i~~i~~~-~~~~~-~--~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~---~~ 91 (567)
+.|++ .|.+++++.++... .++.. . ..|++|+|+|||+++|.+| |++|++|||++| .||||++++. ..
T Consensus 33 ~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg--~iQvv~~~~~~~~~~ 107 (504)
T 1e1o_A 33 VAFPN-DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG--KASFVTLQDVGG--RIQLYVARDSLPEGV 107 (504)
T ss_dssp CSSCC-CCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTE--EEEEEEETTTSSTTH
T ss_pred CCCCC-CCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC--CcEEEEEEECCe--eEEEEEECCcCCHHH
Confidence 45554 56788999998853 11110 0 0188999999999999999 799999999986 5999998653 11
Q ss_pred ---cccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHHH
Q 008405 92 ---LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAA 164 (567)
Q Consensus 92 ---~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~~ 164 (567)
..+.|+.||+|.|+|+|.+++. |++||++++|+|||+|. .|+|.+.++ .|.+.++||||+| ++.+++
T Consensus 108 ~~~~~~~l~~g~~V~V~G~v~~~~~---ge~ei~~~~i~vl~~a~---~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~ 181 (504)
T 1e1o_A 108 YNDQFKKWDLGDIIGARGTLFKTQT---GELSIHCTELRLLTKAL---RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQ 181 (504)
T ss_dssp HHHTGGGCCTTCEEEEEEEEEECTT---CCEEEEEEEEEEEECCS---SCCCC-------TTHHHHTHHHHHHHCHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEEEEecCC---ceEEEEEEEEEEecccC---CCCCccccCCcChhhhhhccchhhhcCHHHHH
Confidence 2356999999999999999984 69999999999999974 345555444 5667788999995 899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCC-ccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhh
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG-EMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKG 243 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~-e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (567)
+|++||+|+++||+||+++||+||+||+|+++ ++||+ +.|.+.
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~-~~Ga~ar~F~t~----------------------------------- 225 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-PGGASARPFITH----------------------------------- 225 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS-CCSSCCCCCEEE-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec-CCCCcccceEec-----------------------------------
Confidence 99999999999999999999999999999965 77775 456442
Q ss_pred hHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCC
Q 008405 244 EAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVS 322 (567)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~ 322 (567)
.++|++++||.+|||||||++ ++|++
T Consensus 226 -----------------------------------------------------~~~~~~~~yL~~SpqLylk~L~v~G~~ 252 (504)
T 1e1o_A 226 -----------------------------------------------------HNALDLDMYLRIAPELYLKRLVVGGFE 252 (504)
T ss_dssp -----------------------------------------------------ETTTTEEEEECSCSHHHHHHHHHHTCC
T ss_pred -----------------------------------------------------cCCCCceEEeccCHHHHHHHHhhcCCC
Confidence 136889999999999999995 67899
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhcc
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 402 (567)
||||||||||||+++ .||||||||||||++|+|++++|+++|+||+++++.+.+++. +.+.+.. ..+
T Consensus 253 rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~----------i~~ 319 (504)
T 1e1o_A 253 RVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYGEHV----------FDF 319 (504)
T ss_dssp EEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEETTEE----------EET
T ss_pred cEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeCCEe----------ecc
Confidence 999999999999996 599999999999999999999999999999999999998763 4443221 125
Q ss_pred CCCcceecHHHHHHHHHH-HHHcC-cccc----cccccccc---------cchhHHhhhccccccCcEEEecCCCCCccc
Q 008405 403 STPFERITYTEAVELLEV-AVKEG-KHFE----NKVEWGID---------LASEHERYLTEVKFQKPVIVYNYPKGIKAF 467 (567)
Q Consensus 403 ~~pf~rity~eA~~~l~~-~~~~~-~~~~----~~~~~g~d---------l~~~~e~~L~e~~~~~p~fI~~yP~~~~pf 467 (567)
..||+||||.||++.+.+ ..... .... ...++|.+ +-.++...++++.+.+|+||+|||..++||
T Consensus 320 ~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fV~dyP~~~~pf 399 (504)
T 1e1o_A 320 GKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL 399 (504)
T ss_dssp TSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT
T ss_pred CCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCCeEEEECCCcccCcC
Confidence 679999999999999854 11000 0000 00112222 223333345566678999999999999999
Q ss_pred cccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHc------CCCCC--CcHHHHHHhhcCCCCcceeeecH
Q 008405 468 YMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM------GLPLE--PYEWYLDLRRFGTVKHSGFGLGF 539 (567)
Q Consensus 468 ~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~------g~~~~--~~~~yl~a~~~G~PP~gG~GiGi 539 (567)
+++.++|+.++++||||+| |.||+||++|+++++.|.++++.. |.++. .++|||+|++||+||||||||||
T Consensus 400 ~~~~~~dp~~~~~fDL~i~-G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGi 478 (504)
T 1e1o_A 400 ARRNDVNPEITDRFEFFIG-GREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGI 478 (504)
T ss_dssp BCBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEH
T ss_pred cCCCCCCCCceEEEEEEEC-CeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcH
Confidence 8887777889999999996 569999999999999999998752 43322 24899999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCCCCC
Q 008405 540 ERMILFATGIDNIRDVIPFPRYPGR 564 (567)
Q Consensus 540 DRLlMll~g~~nIrdvi~FPr~~~~ 564 (567)
|||+|+|||.+||||||+||+++..
T Consensus 479 DRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 479 DRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHHHHHhCCCcHHhEeccCCCCCC
Confidence 9999999999999999999999863
No 13
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=3.4e-90 Score=766.86 Aligned_cols=435 Identities=22% Similarity=0.305 Sum_probs=331.6
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc---ccccCCCCCcEEEEE
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVE 105 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~---~~~~~l~~gs~V~V~ 105 (567)
++++.++. .++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++.. +..+.|+.||+|.|+
T Consensus 3 t~~~~~l~------~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~l~~e~~V~V~ 72 (585)
T 1c0a_A 3 TEYCGQLR------LSHVGQQVTLCGWVNRRRDLG--SLIFIDMRDREGI--VQVFFDPDRADALKLASELRNEFCIQVT 72 (585)
T ss_dssp SSCGGGCC------GGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECGGGHHHHHHHTTCCTTCEEEEE
T ss_pred eeEHHHHH------HHhCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEeCCchHHHHHHhcCCCCCEEEEE
Confidence 45566665 467899999999999999999 7999999999874 9999986532 134579999999999
Q ss_pred eEEeCCCCC------CcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHh
Q 008405 106 GMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (567)
Q Consensus 106 G~v~~~~~~------~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~f 179 (567)
|+|.+++.+ ++|++||++++++|||+|.+.++|+.. ..+.+.++++||||+|++.++++|++||+|+++||+|
T Consensus 73 G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~f 151 (585)
T 1c0a_A 73 GTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRF 151 (585)
T ss_dssp EEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEccCcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999998643 468999999999999998644555554 4455656689999999999999999999999999999
Q ss_pred hhcCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhh
Q 008405 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (567)
Q Consensus 180 l~~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
|+++||+|||||+|++++||||++ |.++++..
T Consensus 152 l~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~~~----------------------------------------------- 183 (585)
T 1c0a_A 152 MDDHGFLDIETPMLTKATPEGARD-YLVPSRVH----------------------------------------------- 183 (585)
T ss_dssp HHHTTCEECCCCSSBCCCSSSSCC-CEEECSSS-----------------------------------------------
T ss_pred HHhCCcEEEeCCEEecCCCCCCcc-ceeccccc-----------------------------------------------
Confidence 999999999999999999999988 87764211
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHH-HhhcCCcEEEEecccccCCCCC
Q 008405 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSHT 338 (567)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~-~~~~~~rVFeI~~~FR~E~~~t 338 (567)
.+.-++|.||||||||+ +++|++||||||||||||++++
T Consensus 184 ----------------------------------------~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t 223 (585)
T 1c0a_A 184 ----------------------------------------KGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRA 223 (585)
T ss_dssp ----------------------------------------TTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBT
T ss_pred ----------------------------------------CCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCC
Confidence 11112599999999998 4788999999999999999976
Q ss_pred CCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcc---------cchhhhccC-----Cchhhh--------
Q 008405 339 SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFD---------DMEFMAKNY-----DKSCIN-------- 396 (567)
Q Consensus 339 ~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~---------~l~~~~~~~-----~~~~~~-------- 396 (567)
+ |+||||||||||+|.|++++|+++|+||+++++.+.+.+.. .+..++..- +...++
T Consensus 224 ~-r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~ 302 (585)
T 1c0a_A 224 D-RQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSV 302 (585)
T ss_dssp T-BCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTC
T ss_pred C-cCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEehhhhccC
Confidence 5 45699999999999999999999999999999998764310 000000000 000000
Q ss_pred ---h-----------hhh-cc--CCCcceecHHHHHHHHHHHHHcCccccccccccc------ccchhHHhh--------
Q 008405 397 ---R-----------LRM-VA--STPFERITYTEAVELLEVAVKEGKHFENKVEWGI------DLASEHERY-------- 445 (567)
Q Consensus 397 ---~-----------l~~-~~--~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~------dl~~~~e~~-------- 445 (567)
. +.. .+ ..+|.|.+++++.+.++.... +.+. ...|+. ++.++++++
T Consensus 303 ~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~--~~~~-~~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 379 (585)
T 1c0a_A 303 EFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGA--KGLA-YIKVNERAKGLEGINSPVAKFLNAEIIED 379 (585)
T ss_dssp SCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTC--SCCC-EEEESCGGGGGGGEECTTGGGSCHHHHHH
T ss_pred CcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCC--CCce-eEEecccccccccccchhhhhcCHHHHHH
Confidence 0 000 00 012344445554444432110 0010 011221 122222111
Q ss_pred ---------------------------------------hccccccCcEEEecCCCC-----------CccccccccC--
Q 008405 446 ---------------------------------------LTEVKFQKPVIVYNYPKG-----------IKAFYMRLND-- 473 (567)
Q Consensus 446 ---------------------------------------L~e~~~~~p~fI~~yP~~-----------~~pf~~~~~~-- 473 (567)
++++...+|+||+|||.. ++||||+.++
T Consensus 380 l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl 459 (585)
T 1c0a_A 380 ILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTA 459 (585)
T ss_dssp HHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCH
T ss_pred HHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCccCCCchhh
Confidence 222224589999999996 7999998765
Q ss_pred -----Cc-ce-EEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCC----cHHHHHHhhcCCCCcceeeecHHHH
Q 008405 474 -----DL-KT-VAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEP----YEWYLDLRRFGTVKHSGFGLGFERM 542 (567)
Q Consensus 474 -----d~-~~-~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~----~~~yl~a~~~G~PP~gG~GiGiDRL 542 (567)
++ .. +++|||++| |.||+|||+|+||++.|.++|+..|++++. |+|||+|++||+|||||||||||||
T Consensus 460 ~~l~~dp~~~~a~~fDL~i~-G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRL 538 (585)
T 1c0a_A 460 AELKAAPENAVANAYDMVIN-GYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRL 538 (585)
T ss_dssp HHHHHSCTTCBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHH
T ss_pred hhhccCCcceeeeEEEEEEC-CEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHH
Confidence 34 35 799999996 559999999999999999999999998775 8899999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCCCCCC
Q 008405 543 ILFATGIDNIRDVIPFPRYPGRADL 567 (567)
Q Consensus 543 lMll~g~~nIrdvi~FPr~~~~~~~ 567 (567)
+|+|||.+||||||+||++++.+.+
T Consensus 539 vmlltg~~sIRdVi~FPr~~~~~~~ 563 (585)
T 1c0a_A 539 TMLLTGTDNIRDVIAFPKTTAAACL 563 (585)
T ss_dssp HHHHHTCSCGGGGSSSCCCTTSCBT
T ss_pred HHHHcCCCcHHheecCCCCCCcccc
Confidence 9999999999999999999987753
No 14
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1.8e-90 Score=754.42 Aligned_cols=432 Identities=19% Similarity=0.274 Sum_probs=345.4
Q ss_pred cccccccccccceeehhhccC-CCCCC---CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCc---c
Q 008405 18 DDAVQRHQFSDRVLIKSILTR-PDGGA---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---A 90 (567)
Q Consensus 18 ~~~~~~~~~~~r~~i~~i~~~-~~~~~---~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~---~ 90 (567)
.+.|++ .|.+++++.++... .++.. ...|++|+|+|||+++|.+| |++|++|||++| .||||++++. .
T Consensus 24 ~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg--~iQvv~~~~~~~~~ 98 (493)
T 3a74_A 24 VDPFGK-RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG--KAGFAHIQDVTG--QIQIYVRQDDVGEQ 98 (493)
T ss_dssp CCTTCC-CCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTE--EEEEEEEHHHHHHH
T ss_pred CCCCCC-CCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC--CcEEEEEEECCE--eEEEEEECCcCCHH
Confidence 345554 56788999998853 11110 01288999999999999999 799999999986 5999998653 1
Q ss_pred --ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCCcCCC---hhhhccccccccC-cHHHHH
Q 008405 91 --DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAA 164 (567)
Q Consensus 91 --~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~---~e~lr~~~~Lr~R-~~~~~~ 164 (567)
+..+.|+.||+|.|+|+|.+++. |++||++++|++||+|. .|+|.+.++ .+.+.++||||+| ++.+++
T Consensus 99 ~~~~~~~l~~g~~v~V~G~v~~~~~---ge~ei~~~~i~vl~~~~---~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~ 172 (493)
T 3a74_A 99 QYELFKISDLGDIVGVRGTMFKTKV---GELSIKVSSYEFLTKAL---RPLPEKYHGLKDIEQRYRQRYLDLIMNPESKK 172 (493)
T ss_dssp HHHHHHHCCTTCEEEEEEEEEECTT---CCEEEEEEEEEEEECCS---SCCCCC-----CHHHHHHTHHHHHHHCTHHHH
T ss_pred HHHHHhcCCCCCEEEEEEEEEeCCC---CcEEEEEEEEEEccccc---CCCCccccCCCCHhhhhhcchhhhhcCHHHHH
Confidence 12356999999999999999984 69999999999999974 455555444 5667788999996 899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCC-ccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhh
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG-EMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKG 243 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~-e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (567)
+|++||+|++++|+||.++||+||+||+|+++ ++||+ +.|.+.
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~-~~Ga~a~~F~~~----------------------------------- 216 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAV-AGGAAARPFITH----------------------------------- 216 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS-CCSSSSCCCEEE-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEec-CCCCcccceEec-----------------------------------
Confidence 99999999999999999999999999999976 66664 556442
Q ss_pred hHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHHH-hhcCC
Q 008405 244 EAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVS 322 (567)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~~-~~~~~ 322 (567)
.++|++++||.+|||||+|++ ++|++
T Consensus 217 -----------------------------------------------------~~~~~~~~yLr~SpqLylk~l~v~G~~ 243 (493)
T 3a74_A 217 -----------------------------------------------------HNALDMTLYMRIAIELHLKRLIVGGLE 243 (493)
T ss_dssp -----------------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCC
T ss_pred -----------------------------------------------------ccCCCceeEEecCHHHHHHHHhhcccC
Confidence 136889999999999999995 67899
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhcc
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 402 (567)
||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++. +.+.+.. ..+
T Consensus 244 rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~----------i~~ 310 (493)
T 3a74_A 244 KVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGEHL----------VDL 310 (493)
T ss_dssp EEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETTEE----------EEC
T ss_pred ceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCCEe----------ecc
Confidence 999999999999996 599999999999999999999999999999999999998763 4443221 125
Q ss_pred CCCcceecHHHHHHHHHHHHH-c------------Cccccccccccc-ccchhHHhhhccccccCcEEEecCCCCCcccc
Q 008405 403 STPFERITYTEAVELLEVAVK-E------------GKHFENKVEWGI-DLASEHERYLTEVKFQKPVIVYNYPKGIKAFY 468 (567)
Q Consensus 403 ~~pf~rity~eA~~~l~~~~~-~------------~~~~~~~~~~g~-dl~~~~e~~L~e~~~~~p~fI~~yP~~~~pf~ 468 (567)
..||+||||.||++.+.+... . ...+.....|+. ++-.++...++++.+.+|+||+|||..++||+
T Consensus 311 ~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fv~dyP~~~~pf~ 390 (493)
T 3a74_A 311 TPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA 390 (493)
T ss_dssp CSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTB
T ss_pred CCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcccCCcEEEECCCcccCCcc
Confidence 679999999999998853100 0 000001111221 12223333445666789999999999999998
Q ss_pred ccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHH------cCCCCC--CcHHHHHHhhcCCCCcceeeecHH
Q 008405 469 MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIED------MGLPLE--PYEWYLDLRRFGTVKHSGFGLGFE 540 (567)
Q Consensus 469 ~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~------~g~~~~--~~~~yl~a~~~G~PP~gG~GiGiD 540 (567)
++.++|+.++++||||+| |.||+||++|+++++.|.++++. .|.++. .++|||+|++||+|||||||||||
T Consensus 391 ~~~~~dp~~~~~fDL~i~-G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiD 469 (493)
T 3a74_A 391 KKNPDDPRFTDRFELFIV-GREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVD 469 (493)
T ss_dssp CBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHH
T ss_pred CcCCCCCCeEEEEEEEeC-CeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHH
Confidence 887777889999999996 56999999999999999998865 243332 248999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccCCCC
Q 008405 541 RMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 541 RLlMll~g~~nIrdvi~FPr~~~ 563 (567)
||+|+|||.+||||||+||+++.
T Consensus 470 RLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 470 RLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp HHHHHHHTCSSGGGTSSSCCCCC
T ss_pred HHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999874
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-79 Score=676.71 Aligned_cols=411 Identities=21% Similarity=0.282 Sum_probs=323.8
Q ss_pred cccccceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-----ccccCCCC
Q 008405 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPT 98 (567)
Q Consensus 24 ~~~~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-----~~~~~l~~ 98 (567)
.++.+++++.+|. ..+.|++|+|+|||+++|.+ +|++|||++|. ||||++++.. ++.+.|+.
T Consensus 7 ~~~~rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~-----~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~l~~ 73 (617)
T 4ah6_A 7 SFVVRTNTCGELR------SSHLGQEVTLCGWIQYRRQN-----TFLVLRDFDGL--VQVIIPQDESAASVKKILCEAPV 73 (617)
T ss_dssp CSSSCSSCGGGCC------GGGTTCEEEEEEEECCCCTT-----TEEEEECSSCE--EEEECCCSSSSHHHHHHHHHCCS
T ss_pred ccccCceEHHHhH------HHhCCCEEEEEEEeeeecCe-----EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhcCCC
Confidence 4566677777776 36789999999999999963 49999999874 9999987642 23456999
Q ss_pred CcEEEEEeEEeCCCCC------CcceeEEEEeEEEEecCCCCCCCCCCCcCC---ChhhhccccccccCcHHHHHHHHHH
Q 008405 99 GTCVYVEGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRPRTNTIAAVARIR 169 (567)
Q Consensus 99 gs~V~V~G~v~~~~~~------~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~---~~e~lr~~~~Lr~R~~~~~~i~r~R 169 (567)
||+|.|+|+|++++.+ .+|++||.+++|+|||+|. ++|++.+.+ +.+.+.++||||+|++.++++|++|
T Consensus 74 e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~--~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~R 151 (617)
T 4ah6_A 74 ESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK--KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLR 151 (617)
T ss_dssp SCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC--CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--CCCcccccccccChhhhccceeeeecchHHHHHHHHH
Confidence 9999999999986532 3589999999999999985 677765443 2344558999999999999999999
Q ss_pred HHHHHHHHHhhh-cCCcEEEecCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHh
Q 008405 170 NALAYATHTFLQ-KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAK 248 (567)
Q Consensus 170 s~i~~~iR~fl~-~~gF~EVeTPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
|+|+++||+||. ++||+||+||+|++++||||++ |.++++
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~~-------------------------------------- 192 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPSR-------------------------------------- 192 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEECS--------------------------------------
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceeccc--------------------------------------
Confidence 999999999995 7999999999999999999987 876531
Q ss_pred hhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCccceeecchhhhHHH-HhhcCCcEEEE
Q 008405 249 LKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTF 327 (567)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~~S~ql~le~-~~~~~~rVFeI 327 (567)
++++.+||.||||+|||+ +++|++|||||
T Consensus 193 --------------------------------------------------~~g~~~~L~qSpql~kq~l~v~g~~rvfqi 222 (617)
T 4ah6_A 193 --------------------------------------------------EPGKFYSLPQSPQQFKQLLMVGGLDRYFQV 222 (617)
T ss_dssp --------------------------------------------------STTCEEECCSSTTHHHHHHHHTSCSEEEEE
T ss_pred --------------------------------------------------cCCcccccccCHHHHHHHHHhcccCcEEEE
Confidence 234557899999999998 47889999999
Q ss_pred ecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhhccCCchhhhhhhhccCCCcc
Q 008405 328 GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFE 407 (567)
Q Consensus 328 ~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~ 407 (567)
|||||||+++ .+|+|||||||||++|.|++++|+++|+||+++++.+. ..+..||+
T Consensus 223 ~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~-----------------------~~~~~pf~ 278 (617)
T 4ah6_A 223 ARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDK-----------------------DPVVVPFP 278 (617)
T ss_dssp EEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSS-----------------------CCCCSSCC
T ss_pred EhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhc-----------------------CccCCCce
Confidence 9999999996 56799999999999999999999999999999875321 12457899
Q ss_pred eecHHHHHHHHHH----------------------------HHHc-C-----------c-ccccc---------cc-ccc
Q 008405 408 RITYTEAVELLEV----------------------------AVKE-G-----------K-HFENK---------VE-WGI 436 (567)
Q Consensus 408 rity~eA~~~l~~----------------------------~~~~-~-----------~-~~~~~---------~~-~g~ 436 (567)
||||.||+..|.. .... + . .+... .. +|.
T Consensus 279 r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ 358 (617)
T 4ah6_A 279 TMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQ 358 (617)
T ss_dssp EEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCC
T ss_pred EeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCC
Confidence 9999999988721 0000 0 0 00000 00 010
Q ss_pred -----------ccchhHHh-----------------------------------------hhcc-----------ccccC
Q 008405 437 -----------DLASEHER-----------------------------------------YLTE-----------VKFQK 453 (567)
Q Consensus 437 -----------dl~~~~e~-----------------------------------------~L~e-----------~~~~~ 453 (567)
.+.+...+ .+.+ +-...
T Consensus 359 ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~ 438 (617)
T 4ah6_A 359 EILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFS 438 (617)
T ss_dssp CEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCC
T ss_pred ceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeE
Confidence 00000000 0111 11136
Q ss_pred cEEEecCCCC-------------CccccccccCC-------c--ceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHH-H
Q 008405 454 PVIVYNYPKG-------------IKAFYMRLNDD-------L--KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIE-D 510 (567)
Q Consensus 454 p~fI~~yP~~-------------~~pf~~~~~~d-------~--~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~-~ 510 (567)
++||+|||.. ..||.++..+| + -.+.+|||++| |.||+|||+|+|+++.|+++++ .
T Consensus 439 f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~-g~El~~gs~ri~~~~~q~~~f~~~ 517 (617)
T 4ah6_A 439 FLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLN-GNEIGGGSIRIHNAELQRYILATL 517 (617)
T ss_dssp EEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEET-TEEEEEEECCCCSHHHHHHHHHHH
T ss_pred EEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEEC-CEEEeeeeEEcCCHHHHHHHHHHh
Confidence 8999999974 24998876433 2 13568999995 6899999999999999999998 7
Q ss_pred cCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008405 511 MGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563 (567)
Q Consensus 511 ~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~~ 563 (567)
.|++.+.|+|||+|++||+|||||||+|||||+|+++|.+||||||+||+...
T Consensus 518 ~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi~fP~~~~ 570 (617)
T 4ah6_A 518 LKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFR 570 (617)
T ss_dssp CSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSSSSCCCSS
T ss_pred hccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEEecCCCCC
Confidence 88888889999999999999999999999999999999999999999999763
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=3.7e-70 Score=570.79 Aligned_cols=285 Identities=21% Similarity=0.300 Sum_probs=233.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecCCCCCCC-ccceeeeccccchhhhhhhcCCCCCChhhHHH
Q 008405 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG-EMFQVTTLISDADKLEKELIKNPPPSEADIEA 234 (567)
Q Consensus 156 r~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~eGa~-e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (567)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++||+ ++|.+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~--------------------------- 78 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET--------------------------- 78 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE---------------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE---------------------------
Confidence 44565 78999999999999999999999999999999998888764 44433
Q ss_pred HHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccC------ccceeec
Q 008405 235 AKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFA------RQAFLTV 308 (567)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~------~~~~L~~ 308 (567)
+||+ +++||+|
T Consensus 79 ---------------------------------------------------------------~~~~~~~~~~~~~yL~~ 95 (345)
T 3a5y_A 79 ---------------------------------------------------------------RFVGPGHSQGMNLWLMT 95 (345)
T ss_dssp ---------------------------------------------------------------EECCSTTSCCEEEEECS
T ss_pred ---------------------------------------------------------------EecCcccccCCCEeecC
Confidence 3444 6799999
Q ss_pred chhhhHHH-HhhcCCcEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcCcccchhhh
Q 008405 309 SGQLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMA 387 (567)
Q Consensus 309 S~ql~le~-~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~~~~l~~~~ 387 (567)
|||||||+ +++|++||||||||||||++ +.||+|||||||||++|.|++++|+++|+||+++++ +
T Consensus 96 Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----~-------- 161 (345)
T 3a5y_A 96 SPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----C-------- 161 (345)
T ss_dssp CSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----C--------
T ss_pred CHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----C--------
Confidence 99999996 67899999999999999999 899999999999999999999999999999999975 0
Q ss_pred ccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHH----------cCcccccc-cccc-cccchhHHhhhc---cccc-
Q 008405 388 KNYDKSCINRLRMVASTPFERITYTEAVELLEVAVK----------EGKHFENK-VEWG-IDLASEHERYLT---EVKF- 451 (567)
Q Consensus 388 ~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~----------~~~~~~~~-~~~g-~dl~~~~e~~L~---e~~~- 451 (567)
.||+||||.||++.+.+... ..++.... ..++ .++....|+++. ++.+
T Consensus 162 ----------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg 225 (345)
T 3a5y_A 162 ----------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIG 225 (345)
T ss_dssp ----------------CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGGGSS
T ss_pred ----------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcC
Confidence 27899999999988732100 00000111 2233 345555666664 3444
Q ss_pred -cCcEEEecCCCCCccccccccCCcceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHc-------CCCCCCc-HHHH
Q 008405 452 -QKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM-------GLPLEPY-EWYL 522 (567)
Q Consensus 452 -~~p~fI~~yP~~~~pf~~~~~~d~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~-------g~~~~~~-~~yl 522 (567)
.+|+||+|||..++||++..++++.++++||||+| |.||+||++|++++++|+++++.. |+++.++ +|||
T Consensus 226 ~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~-G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl 304 (345)
T 3a5y_A 226 KEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYK-GIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLI 304 (345)
T ss_dssp SSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred CCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEEC-CEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 58999999999999997665555667889999996 569999999999999999998874 8888888 5899
Q ss_pred HHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCC
Q 008405 523 DLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYP 562 (567)
Q Consensus 523 ~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrdvi~FPr~~ 562 (567)
+|++||+|||||||||||||+|+|||.+||||||+|||+.
T Consensus 305 ~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 305 EALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 9999999999999999999999999999999999999984
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=7.2e-64 Score=514.29 Aligned_cols=278 Identities=25% Similarity=0.420 Sum_probs=241.5
Q ss_pred cccccccCcHHHHHHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC--------CCCCCCccceeeeccccchhhhhhhc
Q 008405 151 DRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS--------DCEGAGEMFQVTTLISDADKLEKELI 222 (567)
Q Consensus 151 ~~~~Lr~R~~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~--------~~eGa~e~f~~~~~~~~~~~~~~~~~ 222 (567)
++|++++|++ .+++|++|+.|++.+|+||.++||+||+||+|+++ ++|| ++.|
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f----------------- 61 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPA----------------- 61 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCC-----------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeE-----------------
Confidence 3788999999 99999999999999999999999999999999998 5555 3334
Q ss_pred CCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCccchhccCc
Q 008405 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFAR 302 (567)
Q Consensus 223 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~ 302 (567)
..+|+++
T Consensus 62 -------------------------------------------------------------------------~~~~~~~ 68 (294)
T 1nnh_A 62 -------------------------------------------------------------------------EVEIYGV 68 (294)
T ss_dssp -------------------------------------------------------------------------EEEETTE
T ss_pred -------------------------------------------------------------------------EEEcCCC
Confidence 3347788
Q ss_pred cceeecchhhhHHHH-hhcCCcEEEEecccccCC--CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhhhcC
Q 008405 303 QAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEH--SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHC 379 (567)
Q Consensus 303 ~~~L~~S~ql~le~~-~~~~~rVFeI~~~FR~E~--~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~~~~ 379 (567)
+++|++|||+|+|++ +++++|||+||||||+|+ +++.||+|||||||||++|.|+.++|+++|+|++.++..+.+..
T Consensus 69 ~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~ 148 (294)
T 1nnh_A 69 KMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT 148 (294)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999996 456999999999999999 87789999999999999999999999999999999998775411
Q ss_pred cccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccchhHHhhhccccccCcEEEec
Q 008405 380 FDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYN 459 (567)
Q Consensus 380 ~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~~~~e~~L~e~~~~~p~fI~~ 459 (567)
+... + .+. +|+|++|.||++.+ |. ++|+ ++ ...+|+||+|
T Consensus 149 -------~~~i-----~----~~~-~~~r~~y~ea~~~~----------------g~----~~er--~~-~~~~P~~v~~ 188 (294)
T 1nnh_A 149 -------GREF-----P----KTK-RFEVFEYSEVLEEF----------------GS----DEKA--SQ-EMEEPFWIIN 188 (294)
T ss_dssp -------SSCC-----C----CCS-SCEEEEHHHHHHHT----------------SS----HHHH--HH-HCSSCEEEEC
T ss_pred -------cccc-----c----cCC-CceEeEHHHHHHHh----------------CC----hHhh--hh-hcCCCEEEEc
Confidence 1100 0 022 39999999999642 11 2233 22 2478999999
Q ss_pred CCCCCccccccccCCcceEEEEEeeeC-CeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCC-Ccceeee
Q 008405 460 YPKGIKAFYMRLNDDLKTVAAMDVLVP-KVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTV-KHSGFGL 537 (567)
Q Consensus 460 yP~~~~pf~~~~~~d~~~~~~fDL~~~-~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~P-P~gG~Gi 537 (567)
|| +|||++. |+..+++||||++ |.+||+||++|+++++.|.++++..|++++.|+|||+|++||+| |||||||
T Consensus 189 ~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~gl 263 (294)
T 1nnh_A 189 IP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGI 263 (294)
T ss_dssp CC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEE
T ss_pred CC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEE
Confidence 99 9999886 6678999999998 77799999999999999999999999999999999999999999 9999999
Q ss_pred cHHHHHHHHcCCCCccccccccCCCCCC
Q 008405 538 GFERMILFATGIDNIRDVIPFPRYPGRA 565 (567)
Q Consensus 538 GiDRLlMll~g~~nIrdvi~FPr~~~~~ 565 (567)
|||||+|+++|++|||||++|||++++|
T Consensus 264 GieRL~mll~g~~~Irdvi~Fp~~~~~~ 291 (294)
T 1nnh_A 264 GVERLVRFIVGAKHIAEVQPFPRIPGIP 291 (294)
T ss_dssp EHHHHHHHHHTCSSGGGGCSSCCCTTSC
T ss_pred cHHHHHHHHhCCCCHHHEEeccCCCCcc
Confidence 9999999999999999999999999986
No 18
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.83 E-value=2.2e-19 Score=180.57 Aligned_cols=227 Identities=15% Similarity=0.062 Sum_probs=174.9
Q ss_pred CccceeecchhhhHHHHhh--cC---CcEEEEecccccCCC-CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 008405 301 ARQAFLTVSGQLQVETYAC--AV---SNVYTFGPTFRAEHS-HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (567)
Q Consensus 301 ~~~~~L~~S~ql~le~~~~--~~---~rVFeI~~~FR~E~~-~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~ 374 (567)
+..+-.+.|--.+|++.+. +| +++|.-.++.|.++. .+.+|.-+|+|.|||......+..|+.++++++.+...
T Consensus 64 ~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ 143 (330)
T 12as_A 64 DAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAG 143 (330)
T ss_dssp TCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHH
T ss_pred CceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHH
Confidence 4556799999999998643 47 999999999998544 57899999999999999988888888889888877776
Q ss_pred hhhcCcccchhhhccCCchhhhhhhhccCCCcceecHHHHHHHHHHHHHcCcccccccccccccc-hhHHhhhccccccC
Q 008405 375 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLA-SEHERYLTEVKFQK 453 (567)
Q Consensus 375 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~pf~rity~eA~~~l~~~~~~~~~~~~~~~~g~dl~-~~~e~~L~e~~~~~ 453 (567)
+...- .++...+. +.+.+..++..+|..|+.+.|- +++ .+.|..+.+. ..
T Consensus 144 ik~tE----~~~~~~y~------l~p~Lp~~i~fitsqeL~~~YP-----------------~lt~keRE~~i~ke--~g 194 (330)
T 12as_A 144 IKATE----AAVSEEFG------LAPFLPDQIHFVHSQELLSRYP-----------------DLDAKGRERAIAKD--LG 194 (330)
T ss_dssp HHHHH----HHHHHHSC------CCCCSCSSCEEEEHHHHHHHSS-----------------SSCHHHHHHHHHHH--HS
T ss_pred HHHHH----HHHHHHhc------cCcCCCCceEEEeHHHHHHHcC-----------------CCChHHHHHHHHHh--hC
Confidence 65421 11122221 1123667889999999988762 122 2345555442 58
Q ss_pred cEEEecCCCCCcc--ccc-cccCCcceE---------EEEEeee-C----CeeEeecchhhhhcHHHHHHHHHHcCCCCC
Q 008405 454 PVIVYNYPKGIKA--FYM-RLNDDLKTV---------AAMDVLV-P----KVGELIGGSQREERYDVIKSRIEDMGLPLE 516 (567)
Q Consensus 454 p~fI~~yP~~~~p--f~~-~~~~d~~~~---------~~fDL~~-~----~~~El~~G~~r~~~~~~l~~~~~~~g~~~~ 516 (567)
+|||++.+..++. ++. +.++.+.+. .+.||++ + +..||.+++.| .+++.+.++++..|.++.
T Consensus 195 aVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er 273 (330)
T 12as_A 195 AVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDR 273 (330)
T ss_dssp EEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTG
T ss_pred CEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChh
Confidence 9999999987652 222 222234455 7899998 3 57999999999 899999999999999888
Q ss_pred CcHHHHHHhhcCC-CCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 517 PYEWYLDLRRFGT-VKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 517 ~~~~yl~a~~~G~-PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
...+|..++..|. |++.|.|||..||+|+|++...|-+|.+
T Consensus 274 ~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 274 LELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp GGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred hccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 8889999988885 9999999999999999999999999975
No 19
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.78 E-value=2.5e-20 Score=190.67 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=124.3
Q ss_pred CcceeEEEEeEEEEecCCCCCCCCCCCcCCChhhhccccccccCcHHHHHHHHH-----HHHHHHHHHHhhhcCCcEEEe
Q 008405 115 TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARI-----RNALAYATHTFLQKQGFLYIH 189 (567)
Q Consensus 115 ~~~~lEl~~~~i~vls~~~~~~~Pi~~~~~~~e~lr~~~~Lr~R~~~~~~i~r~-----Rs~i~~~iR~fl~~~gF~EVe 189 (567)
++|++||++++|++||+|. .++|++.+.. ..++++|+||+|++.++++++. ++++.+.+|++|...||.||+
T Consensus 23 ~~~~~ei~~~~~~vl~~a~-~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~ 99 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPK-DEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIK 99 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTT-CC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCceEEEEhhhhhhhccCC-CCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEE
Confidence 5689999999999999985 4678775443 2367889999999999999999 999999999999999999999
Q ss_pred cCeeecCCCCCCCccceeeeccccchhhhhhhcCCCCCChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHH
Q 008405 190 TPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKA 269 (567)
Q Consensus 190 TPiL~~~~~eGa~e~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (567)
||+|++.++ .+.+.++. .+|.
T Consensus 100 Tp~l~~~~~---~~~~~~~~-------------~~p~------------------------------------------- 120 (290)
T 3qtc_A 100 SPILIPLEY---IERMGIDN-------------DTEL------------------------------------------- 120 (290)
T ss_dssp CCSEEETHH---HHHTTCCT-------------TSSG-------------------------------------------
T ss_pred CCceeeHHH---HHhcCCCc-------------CCch-------------------------------------------
Confidence 999998632 11111100 0000
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCccchhccCccceee--cchhhhHHHH--h---hcCCcEEEEecccccCCCCCCCCc
Q 008405 270 KENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLT--VSGQLQVETY--A---CAVSNVYTFGPTFRAEHSHTSRHL 342 (567)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~f~~~yf~~~~~L~--~S~ql~le~~--~---~~~~rVFeI~~~FR~E~~~t~rHl 342 (567)
.-.+.+|+...+|. +|||++..+. . ....|+||||+|||+|.. +.+|+
T Consensus 121 ------------------------~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~ 175 (290)
T 3qtc_A 121 ------------------------SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHL 175 (290)
T ss_dssp ------------------------GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCC
T ss_pred ------------------------hhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCc
Confidence 00123566778899 9999996653 2 235799999999999976 57899
Q ss_pred cccccceeeeccCC--HHHHHHHHHHHHHH
Q 008405 343 AEFWMVEPEMAFSD--LKDDMNCAEAYVKF 370 (567)
Q Consensus 343 pEFtmLE~e~a~~d--~~~lm~~~E~li~~ 370 (567)
+||||+|+++++.+ +.++..+++.+++.
T Consensus 176 ~Ef~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 176 EEFTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp SEEEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred chheEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 99999999999864 66666555555543
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.59 E-value=4.5e-15 Score=151.44 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=46.2
Q ss_pred EEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008405 479 AAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFG-TVKHSGFGLGFERMILFATGIDNIRDVIP 557 (567)
Q Consensus 479 ~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G-~PP~gG~GiGiDRLlMll~g~~nIrdvi~ 557 (567)
.++|+++ ++.||++|+.+.+..+. ++| .||++|||||+|||+|+++|.+|||++..
T Consensus 219 ~~~~l~~-~~~eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 219 DTVDVMK-GDLELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp CCEEEEE-TTEEEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred EEEEEEe-CCEEEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCC
Confidence 3477888 67899999966544321 567 47999999999999999999999999875
Q ss_pred cc
Q 008405 558 FP 559 (567)
Q Consensus 558 FP 559 (567)
..
T Consensus 276 ~~ 277 (288)
T 3dsq_A 276 SL 277 (288)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.40 E-value=3.2e-12 Score=133.38 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=48.5
Q ss_pred eecchhhhHHHHhhc-C-CcEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 008405 306 LTVSGQLQVETYACA-V-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (567)
Q Consensus 306 L~~S~ql~le~~~~~-~-~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li~~l 371 (567)
.+.||.+. +.+..+ . -||||||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.+
T Consensus 177 t~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 177 THTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp SSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred ccchHHHH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 44555443 444433 2 389999999999876 467999999999999986 7888888877776665
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.21 E-value=1.3e-10 Score=118.75 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=51.3
Q ss_pred ceeecchhhh-HHHHhhc----CCcEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHHH
Q 008405 304 AFLTVSGQLQ-VETYACA----VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMC 372 (567)
Q Consensus 304 ~~L~~S~ql~-le~~~~~----~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l~ 372 (567)
..|-+|.-.. ++.+..+ -.|+||||+|||+++. +.+|+|||+|||+++++ .|+.+++..++.+++.++
T Consensus 110 ~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 110 ILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp EEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 3454444333 4445555 5699999999999875 36799999999999998 678999988888777653
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.14 E-value=2.1e-10 Score=118.37 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=38.3
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMC 372 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l~ 372 (567)
|+|+||+|||++ . +.+|+|+|+|+|+.... .|+.++...++.+++.++
T Consensus 186 rifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 186 RIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp CBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred eEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 999999999998 4 58899999999987663 467777777776666653
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.84 E-value=6.9e-09 Score=112.44 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=34.3
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAY 367 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~l 367 (567)
|+|+||+|||+|.. +.+|+|||+|+|+.... .++.+++.+++.+
T Consensus 349 riFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~ 394 (508)
T 3l4g_A 349 KYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREF 394 (508)
T ss_dssp EEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred eEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 89999999999987 57999999999987653 3555655554443
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.26 E-value=7.1e-06 Score=87.43 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=31.3
Q ss_pred HHHhhcCCcEEEEecccccCCCCCCCCccccccceeeecc
Q 008405 315 ETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF 354 (567)
Q Consensus 315 e~~~~~~~rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~ 354 (567)
+++..+..|+|++|.|||.+.. +..|.|+|.|+|--..|
T Consensus 126 ~~l~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 126 DLLHAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp HHHHTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred HHHHHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 3455556799999999999987 47899999999965543
No 26
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.89 E-value=3.2e-05 Score=82.73 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++.+|.+.+++.+.+.||.||.||+|...
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~ 202 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKP 202 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 345789999999999999999999999999875
No 27
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.68 E-value=0.0001 Score=80.38 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=35.4
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVK 369 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li~ 369 (567)
|+||||+|||.+...+..|.+||+|++..+.+. |+.+++..++.++.
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~ 255 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLR 255 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 899999999987541356999999999988773 56666655555444
No 28
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.65 E-value=6.8e-05 Score=80.95 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~ 97 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLA 97 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH
Confidence 356899999999999999999999999999875
No 29
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.59 E-value=6.6e-05 Score=79.60 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 60 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccH
Confidence 45889999999999999999999999999875
No 30
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.57 E-value=0.00015 Score=77.17 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 46 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFEST 46 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchH
Confidence 35789999999999999999999999999874
No 31
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.56 E-value=0.00026 Score=76.74 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecCC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~ 197 (567)
-.+++..|.+.+|+.|.+.||.||.||+|.+..
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~e 75 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMS 75 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEST
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 458899999999999999999999999998763
No 32
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.49 E-value=0.00037 Score=74.35 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++.+|.+.+++.+.+.||.||.||+|...
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~ 196 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLPSYARE 196 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCceecH
Confidence 45889999999999999999999999999875
No 33
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.45 E-value=0.00065 Score=70.56 Aligned_cols=32 Identities=3% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 35 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~ 66 (344)
T 1z7m_A 35 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT 66 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCcccCcH
Confidence 35788999999999999999999999999764
No 34
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.42 E-value=0.00056 Score=73.10 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|...||.||.||+|...
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 50 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYL 50 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccH
Confidence 35889999999999999999999999999774
No 35
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.36 E-value=0.0001 Score=79.56 Aligned_cols=32 Identities=31% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhh-hcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.+ .+.||.||.||+|...
T Consensus 63 g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~ 95 (460)
T 3uh0_A 63 GAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKK 95 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEECCeeccH
Confidence 4688999999999999 9999999999999764
No 36
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.36 E-value=0.00054 Score=75.91 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 77 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPA 77 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 346899999999999999999999999999875
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.33 E-value=0.00031 Score=75.82 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
...+++.++++.+++.+.+.||.||.||.|...
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~ 215 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNK 215 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 356899999999999999999999999999875
No 38
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.30 E-value=0.00033 Score=78.77 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+|+.+.+.||.||.||+|...
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~ 301 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANV 301 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEET
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccH
Confidence 356899999999999999999999999999875
No 39
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.25 E-value=0.001 Score=70.61 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 17 ~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 47 (421)
T 1h4v_B 17 LRMHQRIVATARKVLEAAGALELVTPIFEET 47 (421)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecccccccH
Confidence 5788999999999999999999999999764
No 40
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.23 E-value=0.00077 Score=72.81 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
...+++.++++.+|+.+.++||.||.||.|...
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~ 238 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNR 238 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccH
Confidence 356999999999999999999999999999875
No 41
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.21 E-value=0.0005 Score=74.22 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|...||.||.||+|...
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 68 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPE 68 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCH
Confidence 45889999999999999999999999999874
No 42
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.21 E-value=0.00096 Score=70.72 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+++..|.+.+|+.|...||.||.||+|...
T Consensus 24 ~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~ 54 (400)
T 3od1_A 24 YKTKKNICDQMTEEINLWGYDMIETPTLEYY 54 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 4788999999999999999999999999654
No 43
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.20 E-value=0.00072 Score=73.13 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~ 76 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHT 76 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 34789999999999999999999999999764
No 44
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.19 E-value=0.00088 Score=71.23 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|...||.||.||+|...
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 48 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQT 48 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHH
Confidence 35788999999999999999999999999764
No 45
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.16 E-value=0.0015 Score=71.25 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=33.1
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYV 368 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~--d~~~lm~~~E~li 368 (567)
|+||||+|||.+...+.+|.+||.||+.-+.+. |+.++...+|.++
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll 266 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLL 266 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 899999999987641246999999999877763 4555554444443
No 46
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.11 E-value=0.0029 Score=68.79 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
...+++.+|++.+++.+.+.||.||.||.|...
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~ 249 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRG 249 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 346889999999999999999999999999875
No 47
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.10 E-value=0.00042 Score=77.88 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++..|.+.+|+.+.+.||.||.||+|...
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~ 301 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 301 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEET
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccH
Confidence 456899999999999999999999999999875
No 48
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.09 E-value=0.0022 Score=69.90 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=35.8
Q ss_pred cEEEEecccccCCCCCCC--Cccccc-cceeeeccCCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSR--HLAEFW-MVEPEMAFSDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~r--HlpEFt-mLE~e~a~~d~~~lm~~~E~li~~ 370 (567)
|+|+||+|||+|..+++= =.-||+ |.|.+..+.+.++....+++++..
T Consensus 159 r~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 159 RFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp EEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 999999999999752110 123999 999999899888777666555543
No 49
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.09 E-value=0.0024 Score=69.96 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++.++++.+|+.+.++||.||.||.|...
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~ 305 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYARE 305 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccH
Confidence 356899999999999999999999999999875
No 50
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.05 E-value=0.00095 Score=72.62 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
...+++.++++.+++.+.++||.||.||.|...
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~ 231 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRK 231 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccch
Confidence 356899999999999999999999999999764
No 51
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.05 E-value=0.00079 Score=72.50 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 164 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.-.+++.+|.+.+++.+.+.||.||.||+|...
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~ 223 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRR 223 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCH
Confidence 345888999999999999999999999999875
No 52
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.04 E-value=0.0012 Score=72.30 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=36.2
Q ss_pred cEEEEecccccCCCCCCC--CccccccceeeeccCCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSR--HLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~r--HlpEFtmLE~e~a~~d~~~lm~~~E~li~~ 370 (567)
|+|++|+|||+|-..+.= =.-||+|.|.+..|.+.++..+.++.++..
T Consensus 150 rl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 150 KLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp EEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 899999999999431110 123999999999999988887777766543
No 53
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.01 E-value=0.0014 Score=70.69 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeee
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIIT 194 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~ 194 (567)
-.+.|..|.+.+|+.|...||.||+||++.
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E 54 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVE 54 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccc
Confidence 347889999999999999999999999983
No 54
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.00 E-value=0.0045 Score=55.16 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=56.9
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc---ccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeE
Q 008405 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL---GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (567)
Q Consensus 49 ~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~---~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~ 125 (567)
.|++.|+|.+++.... -+-+.|.|+|| ..|.+....+..+- ...+..|+.|.|.|.+..-. +...|.+..
T Consensus 33 ~V~iVG~V~~~~~~~~--~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~----g~~qi~~~~ 105 (132)
T 3kdf_D 33 QVTIVGIIRHAEKAPT--NIVYKIDDMTA-APMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ----NKKSLVAFK 105 (132)
T ss_dssp EEEEEEEEEEEEECSS--EEEEEEECSSS-SCEEEEEEC---------CCCCTTCEEEEEEEEEEET----TEEEEEEEE
T ss_pred EEEEEEEEEEEEEcCC--eEEEEEECCCC-CEEEEEEEccCCCcccccccccCCCEEEEEEEEEeEC----CEEEEEEEE
Confidence 5999999999998884 45568999998 14999987654321 34688999999999997654 467898988
Q ss_pred EEEecC
Q 008405 126 VVDVGM 131 (567)
Q Consensus 126 i~vls~ 131 (567)
+..+..
T Consensus 106 ir~v~d 111 (132)
T 3kdf_D 106 IMPLED 111 (132)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 887754
No 55
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.98 E-value=0.0015 Score=68.67 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+++..|...+|+.|...||.||.||+|...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~ 67 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYV 67 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeH
Confidence 4788999999999999999999999999653
No 56
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=96.91 E-value=0.001 Score=72.58 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=36.3
Q ss_pred cEEEEecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~--~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~ 370 (567)
|+||||+|||+|-. .+-.-.-||+|.|.+....+.++..+.++.++..
T Consensus 144 rl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~ 193 (518)
T 3ial_A 144 KIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKV 193 (518)
T ss_dssp EEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHH
Confidence 89999999999932 1101234999999999778888888777776643
No 57
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=96.82 E-value=0.00088 Score=73.12 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=38.5
Q ss_pred cEEE-EecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHhh
Q 008405 323 NVYT-FGPTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLL 376 (567)
Q Consensus 323 rVFe-I~~~FR~E~~--~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~~~~ 376 (567)
|+|+ ||+|||+|.. ++---.-||+|.|++. |.+-++..+..++++......++
T Consensus 346 rl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ee~ee~i~~~~~~~l 401 (522)
T 2cja_A 346 KVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLKCAEELHDRYMHIFN 401 (522)
T ss_dssp EEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHHHHHHHHHHHHHHHH
Confidence 8999 9999999933 1112334999999997 78888888777777744444443
No 58
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.75 E-value=0.0069 Score=52.41 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCCEEEEEEEEEee---e----ecC--CceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCc
Q 008405 46 AGRQVRVGGWVKTG---R----EQG--KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTK 116 (567)
Q Consensus 46 ~g~~V~v~GwV~~i---R----~~g--k~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~ 116 (567)
.|+.|.+.|.|.++ | +.| + ++.++.|.|++| .|.+.+..+.......+..|++|.|.|.+....- .
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~-~~~~~~l~D~TG--~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~f--~ 89 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREG-KLANVIIADDTG--ELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGF--G 89 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCC-EEEEEEEEETTE--EEEEEEETTGGGGGGTCCTTSEEEEEEEEECCCS--S
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEE-EEEEEEEEeCCC--eEEEEEeCchhhhhhcCCCCCEEEEEeeEEcccc--C
Confidence 47899999999988 2 233 3 589999999987 5999998775433356899999999999865421 2
Q ss_pred ceeEEEEeEEEEecCC
Q 008405 117 QKIELRVQKVVDVGMV 132 (567)
Q Consensus 117 ~~lEl~~~~i~vls~~ 132 (567)
|.++|.+.+...+.++
T Consensus 90 g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 90 GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSCEEEECTTCCEEEE
T ss_pred CeEEEEECCCceEEEC
Confidence 5788988877666554
No 59
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.74 E-value=0.0026 Score=68.58 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 166 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
.+++..|...+|+.|...||.||.||++...
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~ 73 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESE 73 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEG
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeeh
Confidence 4788999999999999999999999999764
No 60
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=96.66 E-value=0.0018 Score=70.07 Aligned_cols=32 Identities=34% Similarity=0.550 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 79 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIAST 79 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeeh
Confidence 35789999999999999999999999999875
No 61
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=96.65 E-value=0.0054 Score=65.79 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
-.+++..|.+.+|+.|...||.||.||+|..
T Consensus 27 ~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~ 57 (464)
T 4g84_A 27 QMAVREKVFDVIIRCFKRHGAEVIDTPVFEL 57 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCc
Confidence 4578999999999999999999999999954
No 62
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.64 E-value=0.019 Score=48.36 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=62.1
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEeee---e----cCC-ceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGR---E----QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTC 101 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR---~----~gk-~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~ 101 (567)
.+|++|.. |..|.|.|+|.++- . .|+ +++.=+.|.|.|| .|.+.+..+..+. .+..||+
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~~--~i~~Gdv 69 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELADF--EVKKGDI 69 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGGC--CCCTTCE
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCcccc--ccCCCCE
Confidence 46777762 57899999997762 2 221 1355578899986 4999988765322 6899999
Q ss_pred EEEEeEEeCCCCCCcceeEEEEeEEEEecCC
Q 008405 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 102 V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~ 132 (567)
|.|.|.+..-. +.+||.+.+...+.+|
T Consensus 70 v~i~g~v~~~~----~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 70 AEVSGYVKQGY----SGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEEC------CEEEEEEEEEEEECC
T ss_pred EEEEEEEEEcC----CeEEEEECCCcEEEEC
Confidence 99999987665 5899999998887664
No 63
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.61 E-value=0.0027 Score=69.28 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhh--cCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQ--KQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~--~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.+. +.||.||.||+|.+.
T Consensus 38 G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~ 71 (505)
T 1ati_A 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHR 71 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCH
Confidence 45889999999999998 899999999999886
No 64
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.55 E-value=0.024 Score=48.49 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=67.2
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEeeee-------cCC-ceeEEEEEecCCCCceeEEEEeCCccccccCCCCC
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE-------QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~-------~gk-~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~g 99 (567)
+..+|++|.. +..|.|.|+|.++-. .|+ +++.=+.|.|.+| .|.+++..+..+. .+..|
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~--~l~~G 70 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI--DVGRG 70 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS--CCCTT
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc--ccCCC
Confidence 4566777762 478999999977631 221 1355578899986 4999988765432 68999
Q ss_pred cEEEEEeEEeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 100 s~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
|+|.+.|.+..... +++||++.+...+.+|+
T Consensus 71 dvv~i~g~vk~~~~---g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 71 DYVRVRGYIREGYY---GGLECTANYVEILKKGE 101 (105)
T ss_dssp CEEEEEEEEEECTT---SSEEEEEEEEEEEECCC
T ss_pred CEEEEEEEEEEccC---CCEEEEeCCceEEEecc
Confidence 99999998877652 58999999999998875
No 65
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.46 E-value=0.024 Score=52.16 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=61.8
Q ss_pred CEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc----ccccCCCCCcEEEEEeEEeCCCCCCcceeEEEE
Q 008405 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (567)
Q Consensus 48 ~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~----~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~ 123 (567)
+.|+|.|.|.+++... +-+.+.|.|+||. .|.|++..+.. .....+..|++|.|.|.+..-. ++.+|.+
T Consensus 48 ~~V~IvGiVv~~~~~~--~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr----~~rqI~~ 120 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE--GKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR----SEVELIA 120 (159)
T ss_dssp CEEEEEEEEEEEEEET--TEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSS----SSCEEEE
T ss_pred EEEEEEEEEEEEEEeC--CEEEEEEecCCCC-eEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeC----CEEEEEE
Confidence 3599999999999888 4677899999983 69999976641 1233578999999999997655 4789999
Q ss_pred eEEEEecC
Q 008405 124 QKVVDVGM 131 (567)
Q Consensus 124 ~~i~vls~ 131 (567)
+++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99999975
No 66
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.34 E-value=0.0075 Score=65.90 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCeeec
Q 008405 165 VARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 195 (567)
-.++|..|.+.+|+.|...||.||.||+|..
T Consensus 80 ~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~ 110 (517)
T 4g85_A 80 QMAVREKVFDVIIRCFKRHGAEVIDTPVFEL 110 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCc
Confidence 4588999999999999999999999999964
No 67
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.29 E-value=0.031 Score=49.88 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=65.5
Q ss_pred ceeehhhccCCCC----CCCCCC---CEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc----cccCCC
Q 008405 29 RVLIKSILTRPDG----GAGLAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVP 97 (567)
Q Consensus 29 r~~i~~i~~~~~~----~~~~~g---~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~----~~~~l~ 97 (567)
-++|++|+++... .-...| ..|++.|+|.+++.... -+-+.|.|+||. |.+....+..+ -...+.
T Consensus 11 PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~--~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~~~ 86 (136)
T 4gop_B 11 PVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNAT--NVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASEIR 86 (136)
T ss_dssp ECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSS--EEEEEEECSSCE--EEEEEECC--------CCSCC
T ss_pred eEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCC--eEEEEEECCCCC--EEEEEecccCCcccccccccC
Confidence 4567777764211 111112 25999999999988874 455688999974 99988765432 134689
Q ss_pred CCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecC
Q 008405 98 TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 98 ~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~ 131 (567)
.|++|.|.|.+..-. +...|.+..+..+..
T Consensus 87 ~g~yVrV~G~v~~f~----g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 87 NNVYVRVLGTLKSFQ----NRRSISSGHMRPVID 116 (136)
T ss_dssp TTCEEEEEEEEEEET----TEEEEEESEEEECSS
T ss_pred CCCEEEEEEEEEEeC----CEEEEEEEEEEECCC
Confidence 999999999997654 467888888887754
No 68
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.96 E-value=0.028 Score=48.40 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=61.5
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccc-cCCCCCcEEEEEeE
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG-QLVPTGTCVYVEGM 107 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~-~~l~~gs~V~V~G~ 107 (567)
.++++++++ ...+..|+|.|.|.+.-. +. +.. .+|++| .|+|-++.+. |. ..++.++-|.+.|.
T Consensus 25 ~~TV~~a~~------~~Dd~~V~L~G~Iv~~~~-~d-~Y~---F~D~TG--~I~VeId~~~--w~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 25 VTTVESAKS------LRDDTWVTLRGNIVERIS-DD-LYV---FKDASG--TINVDIDHKR--WNGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCCHHHHTT------SCSSEEEEEEEEEEEEEE-TT-EEE---EEETTE--EEEEECCGGG--STTCCCCTTSCEEEEEE
T ss_pred eEeHHHHhh------CcCCCeEEEEEEEEEEeC-CC-eEE---EECCCc--cEEEEEChhh--cCCcccCCCCEEEEEEE
Confidence 467888763 456889999999975533 22 344 499986 4999888765 43 46899999999999
Q ss_pred EeCCCCCCcceeEEEEeEEEEec
Q 008405 108 LKNPPEGTKQKIELRVQKVVDVG 130 (567)
Q Consensus 108 v~~~~~~~~~~lEl~~~~i~vls 130 (567)
|-+.- ...||.|.+|+++.
T Consensus 90 vDkd~----~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 90 VDKDW----NSVEIDVKQIRKVN 108 (109)
T ss_dssp EEEET----TEEEEEEEEEEEC-
T ss_pred ECCCC----CceEEEEEEEEEcc
Confidence 98644 35699999998875
No 69
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=95.73 E-value=0.044 Score=56.43 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=39.9
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~~~lm~~~E~li~~l~~ 373 (567)
|+-++++|||+|.+.+--..-+|+|.|+-. |.+-++..+..++++...-.
T Consensus 170 r~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 170 RFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp EEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 677799999999876666667999999854 57888888888888866543
No 70
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=95.40 E-value=0.22 Score=42.63 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=63.6
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEeeee--cCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEE-
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE--QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE- 105 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR~--~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~- 105 (567)
.++|+||.. .++.|.+.|+|.++-. .++ ....+.|.|.||. |-+++..+.. ...+..|++|.|.
T Consensus 5 ~~kI~dl~~--------~~~~v~v~~~V~~~~~~~~~~-~~~~~~l~DeTG~--I~~t~W~~~~--~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 5 LTKIVDIVE--------NGQWANLKAKVIQLWENTHES-ISQVGLLGDETGI--IKFTIWKNAE--LPLLEQGESYLLRS 71 (109)
T ss_dssp BCCTTTCCS--------TTCEEEEEEEEEEEEECCCSS-EEEEEEEECTTCC--EEEEEEGGGC--CCCCCTTCEEEEEE
T ss_pred ceEHHHCCC--------CCCcEEEEEEEEEeEcCCCCe-EEEEEEEECCCCe--EEEEEECccc--ccccCCCCEEEEEE
Confidence 345666652 3678999999988743 332 3556788999975 9999886431 3468999999999
Q ss_pred eEEeCCCCCCcceeEEEEeEEEEecCCC
Q 008405 106 GMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 106 G~v~~~~~~~~~~lEl~~~~i~vls~~~ 133 (567)
|.+..-. |.++|.+.++..+.+.+
T Consensus 72 ~~v~~~~----G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 72 VVVGEYN----DRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEEEET----TEEEEEECSSSEEEECS
T ss_pred EEEEEEC----CEEEEEECCceEEEECC
Confidence 6776544 58999998887776544
No 71
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=95.31 E-value=0.033 Score=59.74 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=30.2
Q ss_pred cEEEEecccccCCC-CCCCCc----cccccceeeeccCCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHS-HTSRHL----AEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~-~t~rHl----pEFtmLE~e~a~~d~~~lm~~~E~li~~l 371 (567)
|+.|||+|||+|.. .+.+|- -||||.|.+ -|.+-++..+..+.++...
T Consensus 175 ~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEECCC----------CCCCEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccccccCCCCcccccceeeeeEE-EEeChhHHHHHHHHHHHHH
Confidence 78999999999941 133332 599999997 3666666655555554443
No 72
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=95.13 E-value=0.0067 Score=68.60 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhh-cCCcEEEecCeeecC
Q 008405 165 VARIRNALAYATHTFLQ-KQGFLYIHTPIITTS 196 (567)
Q Consensus 165 i~r~Rs~i~~~iR~fl~-~~gF~EVeTPiL~~~ 196 (567)
-.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 100 G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 100 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 46899999999999998 569999999999874
No 73
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.00 E-value=0.062 Score=57.71 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=31.5
Q ss_pred CC-cEEEEecccc---cCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 008405 321 VS-NVYTFGPTFR---AEHSHTSRH----LAEFWMVEPEMAFSDLKDDMNCAEAYVKFMC 372 (567)
Q Consensus 321 ~~-rVFeI~~~FR---~E~~~t~rH----lpEFtmLE~e~a~~d~~~lm~~~E~li~~l~ 372 (567)
++ +++|||+||| ||-+ .+| .-||||.|.+. |.+.++..+..+.++....
T Consensus 162 LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~~ 218 (454)
T 1g5h_A 162 LPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRL 218 (454)
T ss_dssp SCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHHH
Confidence 44 8999999999 6854 243 45999999985 7787777666555554433
No 74
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.00 E-value=0.17 Score=50.53 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=66.8
Q ss_pred cceeehhhccCC--CCCCCCCC---CEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc---cccCCCCC
Q 008405 28 DRVLIKSILTRP--DGGAGLAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTG 99 (567)
Q Consensus 28 ~r~~i~~i~~~~--~~~~~~~g---~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~---~~~~l~~g 99 (567)
.-++|++|+++. +..-...| ..|++.|+|.++...+ .-+-+.|.|++|. .|-+.+..+... -...+..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~--~~~~~~L~D~TG~-~I~~k~W~~~~~~~~~~~~~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAA-PMDVRQWVDTDDTSSENTVVPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECS--SEEEEEEECSSSS-CEEEEEECC-------CCCCCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEecc--ceEEEEEECCCCC-EEEEEEEcCcCcccchhhcCCCC
Confidence 467899998741 10011112 2599999999998777 3455689999971 399998765421 13468999
Q ss_pred cEEEEEeEEeCCCCCCcceeEEEEeEEEEecC
Q 008405 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 100 s~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~ 131 (567)
++|.|.|.+..-. +...|.+.+|+.+..
T Consensus 124 ~yVrV~G~v~~f~----g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQ----NKKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEET----TEEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecC----CeeEEEEEEEEecCC
Confidence 9999999997655 467888888887764
No 75
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=94.89 E-value=0.02 Score=57.38 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=25.8
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|++|+|||.|.+.. -||+|+++|.-..+
T Consensus 72 R~~y~g~vfR~e~~~~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 72 KVWYADFVYRYSGSDL----VAEYQLGLEKVPRN 101 (275)
T ss_dssp EEECCEEEEEEETTEE----EEEEEEEEEEESCC
T ss_pred EEEEeceEEecCCCCC----CeeeEeCEEEecCC
Confidence 8999999999998732 69999999987654
No 76
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.74 E-value=0.13 Score=44.63 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=62.4
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEee---e----ecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCV 102 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i---R----~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V 102 (567)
++|++|.. ....|.+.|.|.++ | +.|++.+.=+.|.|.||. |.+.+..+.. ..+..|++|
T Consensus 3 ~~I~dL~~--------~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~~---~~~~~G~vv 69 (119)
T 1o7i_A 3 EKVGNLKP--------NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKHA---GSIKEGQVV 69 (119)
T ss_dssp CCGGGCCT--------TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGGT---TCCCTTCEE
T ss_pred EEHHHCcC--------CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECChh---hcCCCCCEE
Confidence 45666652 22368889999776 4 234213666778999974 9998887652 358899999
Q ss_pred EEE-eEEeCCCCCCcceeEEEEeEEEEecCCCCCCCC
Q 008405 103 YVE-GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYP 138 (567)
Q Consensus 103 ~V~-G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~P 138 (567)
.|. |.+..-. |.++|.+.+...+.++.+..+|
T Consensus 70 ~i~~g~v~~~~----g~~qL~i~~~~~i~~~~~~~~~ 102 (119)
T 1o7i_A 70 KIENAWTTAFK----GQVQLNAGSKTKIAEASEDGFP 102 (119)
T ss_dssp EEEEEEEEEET----TEEEEEECTTCEEEECCCTTCC
T ss_pred EEEeEEEEEeC----CEEEEEECCCEEEEEcCCcCCC
Confidence 999 8876544 5799999886655554323344
No 77
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.23 E-value=0.44 Score=40.51 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=61.0
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEee-----eecCCc-eeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG-----REQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVY 103 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i-----R~~gk~-~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~ 103 (567)
++|+||.. ....|.+.|.|..+ ++.|+. .+.=+.|.|.||. |.+.+..+. +..|++|.
T Consensus 4 ~kI~dl~p--------g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~~------l~~Gdvv~ 67 (106)
T 2k75_A 4 VKIRDVSL--------STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGKQ------LQDSDVVR 67 (106)
T ss_dssp CCSTTCCT--------TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESSC------CCTTEEEE
T ss_pred EEHHHcCC--------CCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcCc------cCCCCEEE
Confidence 45777752 23457777777554 234520 1556778899874 888887653 89999999
Q ss_pred EE-eEEeCCCCCCcceeEEEEeEEEEecCCCCCCCCCCC
Q 008405 104 VE-GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPK 141 (567)
Q Consensus 104 V~-G~v~~~~~~~~~~lEl~~~~i~vls~~~~~~~Pi~~ 141 (567)
|. |.+..-. |.++|.+.+...+.+.. ...|+..
T Consensus 68 i~ng~v~~~~----g~~~L~v~~~~~I~~~~-~~~~~~~ 101 (106)
T 2k75_A 68 IDNARVAQFN----GYLSLSVGDSSRIESVN-VNIPLEH 101 (106)
T ss_dssp EEEEEEEEET----TEEEEEECTTSEEEECC-SCCCCSC
T ss_pred EEeeEEeEEC----CEEEEEECCcEEEEECC-CCCcccc
Confidence 99 7776544 58999998877776654 3456544
No 78
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=93.34 E-value=0.54 Score=45.24 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=57.3
Q ss_pred CEEEEEEEEEeeeecCCc------eeEEEEEecCCCC-ceeEEEEeCCcc-ccc---cCCCCCcEEEEEeEEeCCCC---
Q 008405 48 RQVRVGGWVKTGREQGKG------SFAFLEVNDGSCP-ANLQVIVDKDVA-DLG---QLVPTGTCVYVEGMLKNPPE--- 113 (567)
Q Consensus 48 ~~V~v~GwV~~iR~~gk~------~l~FidLrD~~~~-~~iQvv~~~~~~-~~~---~~l~~gs~V~V~G~v~~~~~--- 113 (567)
+.|.|.|.|-.++..-+. ...|+.|-|.||. ..|.|.++.... ... .....|.+|.|+|.+..-..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~ 165 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSIN 165 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccc
Confidence 469999999888755421 3589999999985 357766664321 011 12458999999999976531
Q ss_pred -CCcceeEEEEeEEEEecC
Q 008405 114 -GTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 114 -~~~~~lEl~~~~i~vls~ 131 (567)
...-+-||.++++.+++.
T Consensus 166 ~~~~~~rei~ve~i~vl~~ 184 (220)
T 3kf8_A 166 VSKKPDRELKVSKITVLSH 184 (220)
T ss_dssp TTSCCCEEEEEEEEEEEES
T ss_pred cccccceEEEEEEEEEecc
Confidence 011145999999999985
No 79
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.09 E-value=0.072 Score=58.75 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=40.1
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l 371 (567)
|+||||+|||++...+.+|.+||.||+.-+.. .|+.++...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998654135799999999998877 47889988888777655
No 80
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.04 E-value=0.074 Score=58.76 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=40.1
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l 371 (567)
|+||||+|||++...+.+|.+||.||+.-+.. .|+.++...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998654135799999999998877 47889988888877655
No 81
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.03 E-value=0.074 Score=58.85 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=40.7
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l 371 (567)
|+||||+|||++...+.+|.+||.||+.-+.. .|+.++...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998654135799999999998877 47899998888887765
No 82
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.88 E-value=0.08 Score=58.73 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=40.5
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~l 371 (567)
|+||||+|||++..-+.+|.+||.||+.-+.. .|+.++...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998654135799999999998877 47899998888887765
No 83
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=92.47 E-value=0.74 Score=40.22 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEE
Q 008405 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~ 123 (567)
++.|+.|++-|+|.+++..|+ .+-+.-.|+ +.|+|.++... ...+ +.+|+|.|+|... .+|.+
T Consensus 19 ~fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg---~~Vtv~l~~p~---~~~l--~~~vEViG~V~~~-------~tI~~ 81 (121)
T 3kdf_A 19 QFIDKPVCFVGRLEKIHPTGK--MFILSDGEG---KNGTIELMEPL---DEEI--SGIVEVVGRVTAK-------ATILC 81 (121)
T ss_dssp GGTTCEEEEEEEEEEECTTSS--EEEEECTTS---CEEEEECSSCC---SSCC--CSEEEEEEEECTT-------SCEEE
T ss_pred hhCCCeEEEEEEEEEEcCCCC--EEEEEeCCC---CEEEEEeCCCC---Cccc--CcEEEEEEEECCC-------CeEEE
Confidence 789999999999999998883 333333343 35777776532 1223 4599999999632 35888
Q ss_pred eEEEEecC
Q 008405 124 QKVVDVGM 131 (567)
Q Consensus 124 ~~i~vls~ 131 (567)
..+..++.
T Consensus 82 ~~~~~fg~ 89 (121)
T 3kdf_A 82 TSYVQFKE 89 (121)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 87777765
No 84
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.21 E-value=0.12 Score=44.67 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=64.7
Q ss_pred ceeehhhccCCCCCCCCCCCEEEEEEEEEee---e------ecCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCC
Q 008405 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R------EQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPT 98 (567)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i---R------~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~ 98 (567)
-+.|++|.. -....+|+|||.++ | ..| ++.=++|.|.+| .|++.+.++.. .|...|..
T Consensus 4 ~~~Is~L~p--------~~~~w~I~~rV~~k~~~r~~~~~~~~g--~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~e 71 (114)
T 1ynx_A 4 IFAIEQLSP--------YQNVWTIKARVSYKGEIKTWHNQRGDG--KLFNVNFLDTSG--EIRATAFNDFATKFNEILQE 71 (114)
T ss_dssp BCCGGGCCT--------TTCCCEEEEEEEEEEEEEEEECSSCEE--EEEEEEEEETTE--EEEEEECHHHHHHHHHHSCS
T ss_pred eEEHHHCCC--------CCCceEEEEEEEEeccceEEecCCCCc--eEEEEEEECCCC--eEEEEECHHHHHHHHhhccc
Confidence 455666652 22348888888854 1 234 688889999987 59999987653 35567999
Q ss_pred CcEEEEEe-EEeCCCCC---CcceeEEEEeEEEEecCCC
Q 008405 99 GTCVYVEG-MLKNPPEG---TKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 99 gs~V~V~G-~v~~~~~~---~~~~lEl~~~~i~vls~~~ 133 (567)
|+++.+.| .|...... ....+||....-..+.+|.
T Consensus 72 G~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 72 GKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp SSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred CcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 99999986 45443321 3468999998777777663
No 85
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=90.57 E-value=0.56 Score=51.90 Aligned_cols=47 Identities=2% Similarity=0.004 Sum_probs=34.9
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~--~d~~~lm~~~E~li~~ 370 (567)
|+||||+|||.+.. ..+|.+|+.++..-+.. .++.++...++.++..
T Consensus 473 rlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 473 KLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 89999999998764 35788899999876554 3577777666655544
No 86
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=90.46 E-value=1.1 Score=51.31 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc-------------CCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF-------------SDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~-------------~d~~~lm~~~E~li~~l 371 (567)
|+||||+|||.+.. ...| +||.+|..=... .|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999997543 2256 899999875544 58999999999888765
No 87
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=88.46 E-value=1.3 Score=38.11 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=39.5
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCC
Q 008405 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNP 111 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~ 111 (567)
.+.|+.|++-|+|.+.+. + . +.|....+ +.|.|.++... .+..+.+|+|.|+|...
T Consensus 15 ~~~g~~VrivGkV~~~~g-~---~--~~l~s~d~-~~Vtv~l~~~~-----~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N---T--LLMQTSDL-GNVEIAMTPDS-----DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T---E--EEEECTTS-CEEEEECCSSC-----CGGGCSEEEEEEEECTT
T ss_pred hhCCCeEEEEEEEeeeCC-C---E--EEEEeCCC-CEEEEEeCCCC-----CcccCcEEEEEEEEcCC
Confidence 689999999999999884 3 2 34553333 35777766543 24468999999999744
No 88
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=88.10 E-value=6.5 Score=34.90 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=52.5
Q ss_pred CCCCCEEEEEEEEE--eeeec--CCceeEEEEEec-CCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcce
Q 008405 44 GLAGRQVRVGGWVK--TGREQ--GKGSFAFLEVND-GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQK 118 (567)
Q Consensus 44 ~~~g~~V~v~GwV~--~iR~~--gk~~l~FidLrD-~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~ 118 (567)
...|+.|+|.|.|. ++.+. +. .+.| +|.| +. ..|.|+.+.-.+ ..++.|.-|-|+|++....
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~-~v~F-~vtD~~~--~~v~V~Y~GilP---DlFrEGqgVVa~G~l~~~g------ 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSL-HVQF-AVHDSLG--GEILVTYDDLLP---DLFREGQGIVAQGVLGEDG------ 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSS-CEEE-EEECTTC--CCEEEEECSCCT---TSCCSSSEEEEEEEECSTT------
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCC-EEEE-EEEcCCC--CEEEEEECCCCC---ccccCCCeEEEEEEECCCC------
Confidence 46789999999995 45443 33 4887 5688 54 358888887654 3578899999999995432
Q ss_pred eEEEEeEEEEecCCCCCCCC
Q 008405 119 IELRVQKVVDVGMVDPAKYP 138 (567)
Q Consensus 119 lEl~~~~i~vls~~~~~~~P 138 (567)
.+.++ +||.+|+ ..|-
T Consensus 96 -~F~A~--eVLaKhd-ekY~ 111 (136)
T 1j6q_A 96 -KLAAT--EVLAKHD-ENYM 111 (136)
T ss_dssp -SEEEE--EEECCC------
T ss_pred -eEEEE--EEEecCC-CCCC
Confidence 25565 5899996 4554
No 89
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=87.49 E-value=4.2 Score=42.58 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=57.9
Q ss_pred CCCEEEEEEEEEee-eecCCceeEEEEEecCCCCceeEEEEeCCc---cccccCCCCCcEEEEEeEEeCCCCCCcceeEE
Q 008405 46 AGRQVRVGGWVKTG-REQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (567)
Q Consensus 46 ~g~~V~v~GwV~~i-R~~gk~~l~FidLrD~~~~~~iQvv~~~~~---~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl 121 (567)
....++|.|.|.+. +.... .=+|+.|.|+++ .|.|++=... -+....|..||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~------g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK------D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETT-TEEEEEEEETTE--EEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET------T--EE
T ss_pred cCceEEEEEEEecCcEeccC-ceEEEEEEcCCC--EEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC------C--EE
Confidence 46789999999977 44332 478999999864 5999985532 234567899999999999853 2 79
Q ss_pred EEeEEEEecCC
Q 008405 122 RVQKVVDVGMV 132 (567)
Q Consensus 122 ~~~~i~vls~~ 132 (567)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998753
No 90
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=86.56 E-value=0.99 Score=43.79 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=64.7
Q ss_pred cceeehhhccCCCCCCCCCCCEEEEEEEEEee---ee----cCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCC
Q 008405 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTG 99 (567)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i---R~----~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~g 99 (567)
..+.|++|.. -...++|+|||.++ |. .|.+++.=++|.|.+| .|++.+.++.. .|...|..|
T Consensus 7 ~~~~I~~L~p--------~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~~~~l~~G 76 (246)
T 1jmc_A 7 KVVPIASLTP--------YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKFFPLIEVN 76 (246)
T ss_dssp CBCCGGGCCT--------TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHHGGGCCTT
T ss_pred ceEEHHHCCC--------CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHhhhhcccC
Confidence 4566777752 23368899999865 32 1222567788999987 59999987653 356679999
Q ss_pred cEEEEEe-EEeCCCC---CCcceeEEEEeEEEEecCCC
Q 008405 100 TCVYVEG-MLKNPPE---GTKQKIELRVQKVVDVGMVD 133 (567)
Q Consensus 100 s~V~V~G-~v~~~~~---~~~~~lEl~~~~i~vls~~~ 133 (567)
+++.+.+ .|..... ...+.+||....-..+.+|.
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 9999987 4443321 13468999887666666653
No 91
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=85.90 E-value=5.7 Score=35.56 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=46.6
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEE
Q 008405 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~ 123 (567)
.+.|++|+|-|+|.+.-..|+ .+ .|....+ ..|+|.++... . -..+-+|+|.|+|... .+|.+
T Consensus 40 ~fvGk~VriVGkV~~~~~~G~--~~--~l~s~Dg-~~VtV~l~~pL---~--~~~~~~VEViG~V~~~-------~tI~~ 102 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTGK--MF--ILSDGEG-KNGTIELMEPL---D--EEISGIVEVVGRVTAK-------ATILC 102 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTSS--EE--EEECTTS-CEEEEECSSCC---S--SCCCSEEEEEEEECTT-------SCEEE
T ss_pred hhCCCEEEEEEEEeEEcCCCC--EE--EEEeCCC-cEEEEEeCCCC---C--ccCCCEEEEEEEECCC-------CcEEE
Confidence 789999999999998854563 23 4554433 35777665321 1 1246799999999432 25777
Q ss_pred eEEEEecC
Q 008405 124 QKVVDVGM 131 (567)
Q Consensus 124 ~~i~vls~ 131 (567)
..+.-++.
T Consensus 103 ~~~~~fGd 110 (142)
T 2pi2_E 103 TSYVQFKE 110 (142)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 77666654
No 92
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=85.85 E-value=1.6 Score=37.69 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=40.3
Q ss_pred eEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~ 132 (567)
|+||+..+...+.+.++.|+-|.|+|.+..... ....++|++++|+.++..
T Consensus 49 i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs~-~G~kl~l~a~~Ie~l~~~ 99 (115)
T 3fhw_A 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPARK-DSVKVKLHLQQARRIAGS 99 (115)
T ss_dssp EEEEEETHHHHHHTTCCTTCEEEEEEEEEESST-TCSSEEEEEEEEEECCCS
T ss_pred EEEEEEhHHHHhhhccCCCCEEEEEEEEEECCC-CCCEEEEEEEEEEEcCCC
Confidence 888988765443467999999999999987542 236799999999999754
No 93
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=85.27 E-value=8.3 Score=34.21 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=55.5
Q ss_pred CCCCCEEEEEEEEE--eeeec--CCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCccee
Q 008405 44 GLAGRQVRVGGWVK--TGREQ--GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (567)
Q Consensus 44 ~~~g~~V~v~GwV~--~iR~~--gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~l 119 (567)
...|+.|+|.|.|. ++.+. +. .+.| .|.|+. ..|.|+...-.+ ..++.|.-|-|+|++....
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~-~v~F-~vtD~~--~~v~V~Y~GilP---DlFrEGqgVVa~G~l~~~g------- 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSL-KVTF-TIYDAE--GSVDVSYEGILP---DLFREGQGVVVQGELEKGN------- 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSS-EEEE-EEECSS--CEEEEEEESCCC---TTCCTTSEEEEEEEECSSS-------
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCC-EEEE-EEEeCC--cEEEEEECCCCC---ccccCCCeEEEEEEECCCC-------
Confidence 46789999999997 45432 32 4787 568875 458888887654 3578899999999985322
Q ss_pred EEEEeEEEEecCCCCCCCC
Q 008405 120 ELRVQKVVDVGMVDPAKYP 138 (567)
Q Consensus 120 El~~~~i~vls~~~~~~~P 138 (567)
.+.++ +||.+|+ ..|-
T Consensus 91 ~F~A~--eVLAKhd-ekYm 106 (136)
T 1sr3_A 91 HILAK--EVLAKHD-ENYT 106 (136)
T ss_dssp EEEES--SCBCCSC-CCCC
T ss_pred eEEEE--EEEecCC-CCCC
Confidence 35565 5899997 4553
No 94
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=84.71 E-value=2.4 Score=40.43 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 171 ALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 171 ~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
++...+|+.|...||.||-|-.+++.
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~ 33 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRA 33 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECG
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCH
Confidence 46678899999999999999999874
No 95
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=84.65 E-value=0.97 Score=53.86 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCCCEEEEEEEEEeeee----cCCceeEEEEEecCCCCceeEEEEeCCc-cccccCCCCCcEEEEEeEEeCCCCCCccee
Q 008405 45 LAGRQVRVGGWVKTGRE----QGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (567)
Q Consensus 45 ~~g~~V~v~GwV~~iR~----~gk~~l~FidLrD~~~~~~iQvv~~~~~-~~~~~~l~~gs~V~V~G~v~~~~~~~~~~l 119 (567)
..|+.|+|+|.|..+|. .|+ .++|+.|.|.+|. +.|++-++. ..+...+..+.+|.|+|+|.... .+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~-~maf~tleD~tg~--~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-----~~ 1111 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGG-MMARFTLSDETGA--LEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-----EL 1111 (1220)
T ss_dssp SSSCEEEEEEEECCC-------------CEEEEETTEE--EEEC-------------CTTCEEEEEEEEC----------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCC-eEEEEEEEECCCC--EEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-----Cc
Confidence 45889999999988763 333 3999999999864 999987665 33455688999999999997432 36
Q ss_pred EEEEeEEEEecC
Q 008405 120 ELRVQKVVDVGM 131 (567)
Q Consensus 120 El~~~~i~vls~ 131 (567)
.|.++++.-++.
T Consensus 1112 ~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1112 RVLAQAVWTLEE 1123 (1220)
T ss_dssp CEEEEEEEEHHH
T ss_pred EEEEeeeecHHH
Confidence 788888887764
No 96
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=84.06 E-value=0.5 Score=49.77 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=26.2
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|+||+|||+|.+. .-+.-||+|+++|.-..+
T Consensus 105 r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 105 RLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp EEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred EEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 899999999999774 345679999999987654
No 97
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=81.51 E-value=8.1 Score=34.58 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=49.9
Q ss_pred CEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEE
Q 008405 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 48 ~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
..|++.|-|-.. ..| . +.|+|++|.-.++. -++.+.-...+..|..|.|.|.+..+. .+-.|.+.++.
T Consensus 59 s~VWmQG~VV~~-~~g--~---~~LdDgTG~~~v~g--~~~vp~g~p~l~~G~YVMV~G~v~~~s----~eP~i~AvKm~ 126 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRG--E---ARLRDPSGDFSVRG--LERVPRGRPCLVPGKYVMVMGVVQACS----PEPCLQAVKMT 126 (150)
T ss_dssp SEEEEEEEEEEE-ETT--E---EEEEETTEEEEEEC--GGGSCCCSCCCSTTCEEEEEEEEEECS----SSCEEEEEEEE
T ss_pred EEEEEEeEEEEe-CCC--e---EEEECCCceEEEee--ccccCCCCcccCCCCEEEEEEEEEecC----CCceEEEEEee
Confidence 369999999986 555 2 56899987522221 111111012478999999999998754 36789999999
Q ss_pred EecC
Q 008405 128 DVGM 131 (567)
Q Consensus 128 vls~ 131 (567)
-||.
T Consensus 127 DLS~ 130 (150)
T 3mxn_B 127 DLSD 130 (150)
T ss_dssp ECCS
T ss_pred eCCC
Confidence 8986
No 98
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=78.56 E-value=6.1 Score=35.47 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=59.1
Q ss_pred ccceeehhhccCCCCCCCCCCCEEEEEEEEEeee----------ecC-------CceeEEEEEecCCCCceeEEEEeCCc
Q 008405 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR----------EQG-------KGSFAFLEVNDGSCPANLQVIVDKDV 89 (567)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~v~GwV~~iR----------~~g-------k~~l~FidLrD~~~~~~iQvv~~~~~ 89 (567)
+..++|+||.. ...-|.|.|+|-.+- ..| ...++=+.|-|.||. |-+.+..+.
T Consensus 14 p~~~kI~dL~p--------g~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~ 83 (145)
T 1wjj_A 14 PVFVKVEQLKP--------GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ 83 (145)
T ss_dssp CSSCCSTTCCT--------TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH
T ss_pred ccceEHHHcCC--------CCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCC
Confidence 34667888863 223477888875442 122 124777888999874 888877764
Q ss_pred cccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEecCC
Q 008405 90 ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 90 ~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vls~~ 132 (567)
...+..||+|.+.+-...-- .|.++|.+.+.--+.+.
T Consensus 84 ---~~~l~~Gd~v~i~na~v~~~---~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 84 ---VDLMKPGATVILRNSRIDMF---KGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp ---HHHTCTTCEEEEEEEEEEEE---TTEEEEEECTTCCBCCC
T ss_pred ---cCcCCCCCEEEEeccEEEeE---CCEEEEEECCCEEEEEC
Confidence 23478999999987544433 25899999876655554
No 99
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=77.66 E-value=1.3 Score=44.35 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=25.6
Q ss_pred cCCC-CcceeeecHHHHHHHHcCCCCccccc
Q 008405 527 FGTV-KHSGFGLGFERMILFATGIDNIRDVI 556 (567)
Q Consensus 527 ~G~P-P~gG~GiGiDRLlMll~g~~nIrdvi 556 (567)
+|++ |...|+||+|||+|+..|.++||+..
T Consensus 247 ~~i~~~v~~~el~le~l~~~~~~~~dir~~~ 277 (290)
T 3qtc_A 247 WGIDKPWIGAGFGLERLLKVKHDFKNIKRAA 277 (290)
T ss_dssp GTCCSCEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred CCCCCceEEEEECHHHHHHHHcCCcHHHHHh
Confidence 3554 77899999999999999999999753
No 100
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=77.34 E-value=29 Score=28.64 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCCCEEEEEEEEE--ee-eec-CCceeEEEEEecC--CCCceeEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcc
Q 008405 44 GLAGRQVRVGGWVK--TG-REQ-GKGSFAFLEVNDG--SCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (567)
Q Consensus 44 ~~~g~~V~v~GwV~--~i-R~~-gk~~l~FidLrD~--~~~~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~ 117 (567)
...|+.++|.|-|. ++ |.. +. .+.| .|.|+ .+ ..|.|....-.+ ..++.|.-|-|+|++.... +
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~-~v~F-~vtD~~~~~-~~v~V~Y~GilP---DlFrEGqgVV~~G~l~~~~----g 74 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAP-GVRF-RLEDKDNTS-KTVWVLYKGAVP---DTFKPGVEVIIEGGLAPGE----D 74 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSS-EEEE-EEECSSCTT-CEEEEEEESCCC---TTCCTTCEEEEEEEECTTC----S
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCC-EEEE-EEEcCCCCC-cEEEEEECCCCC---ccccCCCeEEEEEEEeCCC----C
Confidence 35688999999995 34 432 43 4887 56776 12 469998887654 3578899999999995411 1
Q ss_pred eeEEEEeEEEEecCCC
Q 008405 118 KIELRVQKVVDVGMVD 133 (567)
Q Consensus 118 ~lEl~~~~i~vls~~~ 133 (567)
.+.++ +||.+|+
T Consensus 75 --~F~A~--evLaKh~ 86 (94)
T 2kct_A 75 --TFKAR--TLMTKCP 86 (94)
T ss_dssp --EEEEE--EEEESSC
T ss_pred --EEEEe--EEEEeCC
Confidence 35565 5888885
No 101
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=75.42 E-value=3.1 Score=44.16 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=57.7
Q ss_pred CEEEEEEEEEee---ee----cCCceeEEEEEecCCCCceeEEEEeCCcc-ccccCCCCCcEEEEEeE-EeCCCC---CC
Q 008405 48 RQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGM-LKNPPE---GT 115 (567)
Q Consensus 48 ~~V~v~GwV~~i---R~----~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~~~~~l~~gs~V~V~G~-v~~~~~---~~ 115 (567)
..++|+|||.++ |. .|.+++.-++|.|.+| .|++++.++.. .|...|..|+++.+.+- |..... ..
T Consensus 14 ~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~~ 91 (444)
T 4gop_C 14 NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNL 91 (444)
T ss_dssp CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCSC
T ss_pred cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCccccC
Confidence 357899999753 42 1112678889999987 59999988753 36678999999999974 443321 13
Q ss_pred cceeEEEEeEEEEecCC
Q 008405 116 KQKIELRVQKVVDVGMV 132 (567)
Q Consensus 116 ~~~lEl~~~~i~vls~~ 132 (567)
...+||....-..+.++
T Consensus 92 ~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 92 QNEYEITFENSTEIEEC 108 (444)
T ss_dssp CCSEEEEECTTCEEEEC
T ss_pred CCCEEEEEcCCcEEEEc
Confidence 46789998766666555
No 102
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=74.54 E-value=6.3 Score=33.03 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=34.2
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC--CCCcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP--EGTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~--~~~~~~lEl~~~~i~vls~ 131 (567)
++|++..+... ..+.++.|+-|.|+|.+.... .|.+. .||++++++.|+.
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccCCCCCEE-EEEEEEEEEECcC
Confidence 77787765433 346699999999999998762 12233 8999999998864
No 103
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=73.63 E-value=5.1 Score=33.78 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=36.8
Q ss_pred eEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEEEe
Q 008405 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDV 129 (567)
Q Consensus 81 iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~vl 129 (567)
++||+..+... ...++.|+-|.|+|.+....- ....+.|+++.|+.+
T Consensus 55 i~vv~~gk~Ae-~~~l~KG~~v~veGrL~~rs~-~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQAE-EWQYRQGDCATVEGFLAQKSR-RSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHHH-HSTTCTTCEEEEEEEEEESSS-SCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHhh-hhccCCCCEEEEEEEEEECcc-CCccEEEEEEEEEEc
Confidence 77777665444 445999999999999987764 334899999999876
No 104
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=72.69 E-value=9.7 Score=34.52 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=36.2
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC----CC-CcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl~~~~i~vls~ 131 (567)
+.|++..+... +.+.|+.|+.|.|+|.+.... .| ....+||.+++|.+|..
T Consensus 58 i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~ 114 (158)
T 3tqy_A 58 HRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDN 114 (158)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC-
T ss_pred EEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccC
Confidence 67777665432 334599999999999987642 23 22458999999999975
No 105
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=72.40 E-value=1 Score=48.26 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=30.2
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC--HH----HHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD--LK----DDMNCAEAYVKF 370 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d--~~----~lm~~~E~li~~ 370 (567)
|.|+||+|||.|... .-+.-||+|+++|.-..+ .. +++.++-++++.
T Consensus 122 r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~ 174 (465)
T 3net_A 122 ARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEA 174 (465)
T ss_dssp EEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHH
Confidence 999999999999874 345679999999987643 11 355555544443
No 106
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=71.56 E-value=8.4 Score=32.81 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=35.5
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC----CC-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl~~~~i~vls~~ 132 (567)
++|++..+... +.+.|+.|+.|.|+|.+.... .| ....+||.+++|..|+..
T Consensus 52 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77777654422 334589999999999987642 23 224589999999999753
No 107
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=70.87 E-value=3.7 Score=42.08 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=24.5
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~ 357 (567)
|.|+||+|||+|.+. .-+.-||+|+++|.-..+-
T Consensus 119 rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 119 RYSYFGKIFRKEKRH-KGRSTENYQIGIELFGESA 152 (344)
T ss_dssp EEEEEEECCCCCC--------CCEEEEEEEESSCH
T ss_pred EEEEECcEEccCCCC-CCCcceeEEEEEEEEcCCC
Confidence 999999999999774 4467899999999977663
No 108
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=67.77 E-value=9.6 Score=34.39 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=35.7
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC----CC-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++..+... ..+.|+.|+.|.|+|.+.... .| ....+||.+++|.+|...
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 67777654322 334699999999999988753 12 234589999999999753
No 109
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=62.20 E-value=22 Score=41.69 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=60.1
Q ss_pred eeehhhccCCCCCCCCCCCEEEEEEEEEee--ee--cCCceeEEEEEecCCCCceeEEEE-eCCcc--ccccCCCCCcEE
Q 008405 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG--RE--QGKGSFAFLEVNDGSCPANLQVIV-DKDVA--DLGQLVPTGTCV 102 (567)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~v~GwV~~i--R~--~gk~~l~FidLrD~~~~~~iQvv~-~~~~~--~~~~~l~~gs~V 102 (567)
+.|++|.+ ....|+|.|.|-.+ |. .|+ .+.-+.|.|.++ +|.|-. .++.. .....++.|+.|
T Consensus 8 ~~~~~~~~--------~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~td~~~--~~~~k~f~~~~~~~~~~~~~~~g~~~ 76 (1041)
T 3f2b_A 8 RRLETIVE--------EERRVVVQGYVFDAEVSELKSGR-TLLTMKITDYTN--SILVKMFSRDKEDAELMSGVKKGMWV 76 (1041)
T ss_dssp BCGGGCCS--------CEEEEEEEEEEEEEEEEECTTSC-EEEEEEEECSSC--EEEEEEECSSHHHHHHHHTCCTTCEE
T ss_pred ccHHHhhc--------ccceEEEEEEEEEEEEEEccCCC-EEEEEEEEeCCC--CEEEEEeecccchHHHHhcCCCCCEE
Confidence 45666652 34579999999654 43 455 477778999975 476653 23321 233568999999
Q ss_pred EEEeEEeCCCCCCcceeEEEEeEEEEecC
Q 008405 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (567)
Q Consensus 103 ~V~G~v~~~~~~~~~~lEl~~~~i~vls~ 131 (567)
.|.|.+....- .+++.+.+.+|..+.+
T Consensus 77 ~~~g~~~~d~~--~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 77 KVRGSVQNDTF--VRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEEEECC
T ss_pred EEEEEEEeccC--CcceEEEeeeeEEecc
Confidence 99999987653 2577888888876654
No 110
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=60.85 E-value=2.8 Score=44.79 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=25.1
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|+||+|||+|.+.. -+.-||+|+++|.-..+
T Consensus 125 r~~y~g~vfR~e~~~~-gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 125 KWYSIPQCWRYEAITR-GRRREHYQWNMDIVGVK 157 (456)
T ss_dssp EEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred EEEEeccEEecCCCCC-CCccceEEEEEEEEcCC
Confidence 8999999999998743 45679999999987654
No 111
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=60.70 E-value=6.1 Score=37.51 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 171 ALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 171 ~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
++.+.+|+.|...||.||-|-.+++.
T Consensus 8 ~~~~~ir~~L~~~G~~Evitysf~s~ 33 (213)
T 3ica_A 8 KWQTVVSEQLVGAGFNEILNNSLTAG 33 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEEG
T ss_pred HHHHHHHHHHHHCCCceeeeccCCCH
Confidence 56678999999999999999999874
No 112
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=59.94 E-value=33 Score=30.19 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=38.1
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCCCC-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEG-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~~~-~~~~lEl~~~~i~vls~~ 132 (567)
++||+..+... +.+.++.|+-|.|+|.+...... ....+.+++++|+.|+..
T Consensus 67 i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 78888876543 34569999999999999865321 123577899999999753
No 113
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=56.32 E-value=23 Score=34.57 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=52.5
Q ss_pred CEEEEEEEEEe---eeec--CCceeEEEEE-ecCC-------CCceeEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC-
Q 008405 48 RQVRVGGWVKT---GREQ--GKGSFAFLEV-NDGS-------CPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP- 112 (567)
Q Consensus 48 ~~V~v~GwV~~---iR~~--gk~~l~FidL-rD~~-------~~~~iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~- 112 (567)
..|.|.|+|.+ +|.. |+ .++-+.| .+.. ...-+.|++..+... .. .|+.|+.|.|+|.+....
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~-~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~~~ 206 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGT-AVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVNDSW 206 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCC-EEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCC-EEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEeeEE
Confidence 46889999976 4543 43 2444444 2221 012377777654432 35 899999999999987642
Q ss_pred ---CCC-cceeEEEEeEEEEecC
Q 008405 113 ---EGT-KQKIELRVQKVVDVGM 131 (567)
Q Consensus 113 ---~~~-~~~lEl~~~~i~vls~ 131 (567)
.|. ...+||.+++|..|..
T Consensus 207 ~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 207 TSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp ECTTSCEEEEEEEEEEEEECCCC
T ss_pred ECCCCCEEEEEEEEEEEEEECcc
Confidence 231 2347999999998864
No 114
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=54.36 E-value=31 Score=34.51 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=51.4
Q ss_pred EEEEEEEEEe---eeec--CCceeEEEEEe------cCCC-----CceeEEEEeCCccc-cccCCCCCcEEEEEeEEeCC
Q 008405 49 QVRVGGWVKT---GREQ--GKGSFAFLEVN------DGSC-----PANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNP 111 (567)
Q Consensus 49 ~V~v~GwV~~---iR~~--gk~~l~FidLr------D~~~-----~~~iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~ 111 (567)
.|.|.|+|.+ +|.. |+ .++-+.|- |..| ..-+.|++..+... +.+ |+.|+.|.|+|.+...
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~-~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~~ 208 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGD-AVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVNE 208 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCC-EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCC-EEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEeee
Confidence 4779999976 5643 43 24433441 1111 11377777765433 346 9999999999998764
Q ss_pred CC----C-CcceeEEEEeEEEEecC
Q 008405 112 PE----G-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 112 ~~----~-~~~~lEl~~~~i~vls~ 131 (567)
.- | ....+||.+++|..|..
T Consensus 209 ~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 209 GWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp ECC------CEEEEEEEEEEEECCC
T ss_pred eEECCCCcEEEEEEEEEEEEEEecc
Confidence 31 2 22358999999999864
No 115
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=52.02 E-value=5.4 Score=41.39 Aligned_cols=34 Identities=18% Similarity=-0.014 Sum_probs=24.5
Q ss_pred CcEEEEecccccCCC------CCCCCccccccceeeeccCC
Q 008405 322 SNVYTFGPTFRAEHS------HTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 322 ~rVFeI~~~FR~E~~------~t~rHlpEFtmLE~e~a~~d 356 (567)
-|.|+||+|||+|.. . .-+.-||+|+++|.-..+
T Consensus 118 ~r~~y~g~vfR~e~~g~~~~~~-~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 118 IRWCYCERVYRRTDDPASLSWA-SGKAAESTQVGIERIGEE 157 (373)
T ss_dssp CEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred eEEEEEcceEccCCCccccccc-CCccceeEEeeeEEECCC
Confidence 489999999999976 3 235679999999986654
No 116
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=51.03 E-value=8.6 Score=42.56 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
+.+++.+|+.|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~vese 94 (665)
T 2odr_A 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (665)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeee
Confidence 346678899999999999999999764
No 117
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=50.89 E-value=8.7 Score=42.64 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
+.++..||+.|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IReif~~mGF~E~~~p~vese 94 (685)
T 2odr_D 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (685)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeeh
Confidence 346678899999999999999999764
No 118
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=50.81 E-value=40 Score=30.80 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=49.1
Q ss_pred CEEEEEEEEEe---eeec--CCceeEEEEE-ecCC------C-----CceeEEEEeCC-ccc-cccCCCCCcEEEEEeEE
Q 008405 48 RQVRVGGWVKT---GREQ--GKGSFAFLEV-NDGS------C-----PANLQVIVDKD-VAD-LGQLVPTGTCVYVEGML 108 (567)
Q Consensus 48 ~~V~v~GwV~~---iR~~--gk~~l~FidL-rD~~------~-----~~~iQvv~~~~-~~~-~~~~l~~gs~V~V~G~v 108 (567)
..|.|.|+|.+ +|.. |+ .++-+.| .+.. | ..-+.|++..+ ... +.+.|+.|+.|.|+|.+
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~-~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL 102 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGA-EVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKL 102 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSC-EEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCC-EEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 46888888865 5543 43 2443333 1110 1 12377777665 322 34569999999999999
Q ss_pred eCCCC----C-CcceeEEEE----eEEEEecCC
Q 008405 109 KNPPE----G-TKQKIELRV----QKVVDVGMV 132 (567)
Q Consensus 109 ~~~~~----~-~~~~lEl~~----~~i~vls~~ 132 (567)
....- | ....+||.+ .+|++|+..
T Consensus 103 ~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 103 QTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 86532 2 234578887 578888653
No 119
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=49.89 E-value=9.2 Score=42.56 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhcCCcEEEecCeeecC
Q 008405 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (567)
Q Consensus 170 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 196 (567)
+.+++.||+.|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IReif~~mGF~Ev~~p~Vese 94 (701)
T 2odr_C 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (701)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeee
Confidence 346678899999999999999999754
No 120
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=49.73 E-value=8.9 Score=40.90 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=25.9
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|+||+|||+|.+.. -+.-||+|+++|.-..+
T Consensus 132 r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 132 RLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFA 164 (467)
T ss_dssp EEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred EEEEEccEEccCCCCC-CCcCceEEEEEEEEeCC
Confidence 8999999999998743 45579999999986554
No 121
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=48.69 E-value=7.8 Score=42.82 Aligned_cols=26 Identities=27% Similarity=0.624 Sum_probs=22.4
Q ss_pred CCcceeeecHHHHHHHHcCCCCcccc
Q 008405 530 VKHSGFGLGFERMILFATGIDNIRDV 555 (567)
Q Consensus 530 PP~gG~GiGiDRLlMll~g~~nIrdv 555 (567)
+|...||||+|||+|...+..+||+.
T Consensus 332 ~~V~AFELgLErLaml~~gi~DIR~~ 357 (648)
T 2odr_B 332 VPVMNLGLGVERLAMISGNFADVREM 357 (648)
T ss_dssp SCEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CCEEEEEEeHHHHHHHhcCCCccccc
Confidence 35689999999999999999988754
No 122
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=48.48 E-value=42 Score=26.23 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc--ccCCCCCcEEEEE
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL--GQLVPTGTCVYVE 105 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~--~~~l~~gs~V~V~ 105 (567)
.|+. +.|.|.++...| +|++|.++ +...+..+...+ ...++.||.|.|.
T Consensus 5 ~G~i--v~G~V~~v~~~G----~fV~l~~~-----~~Gllh~sel~~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG----AFINLNEQ-----VRGLLRPRDMISLRLENLNVGDEIIVQ 55 (80)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEEETT-----EEEEECGGGCSSCCGGGCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCCE----EEEEECCC-----CEEEEEHHHCCcccceeeCCCCEEEEE
Confidence 3554 789999999887 89999763 566676544211 1358899998765
No 123
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=48.32 E-value=52 Score=32.05 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=35.5
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCCC---C-CcceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~~---~-~~~~lEl~~~~i~vls~ 131 (567)
+.|++..+... ..+.|+.|+.|.|+|.+....- | ....+||.+++|.+|..
T Consensus 54 ~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~ 109 (264)
T 2fxq_A 54 HRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEG 109 (264)
T ss_dssp EEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCC
T ss_pred EEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcC
Confidence 67777665432 3456999999999999976431 2 22347999999999965
No 124
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=46.82 E-value=46 Score=24.65 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHH
Q 008405 234 AAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276 (567)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (567)
+....|++.|..+..+++++...+++.++++.+-.+|.....+
T Consensus 4 ~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~ 46 (57)
T 1fyj_A 4 VLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999998888777766
No 125
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=46.50 E-value=11 Score=39.66 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=27.9
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|+||++||+|.+... +.-||+|+++|.-..+
T Consensus 101 rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 101 RWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp EEEECCEEECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred EEEEEcCeecCCCCCCC-CccceEEeeEEEEcCC
Confidence 89999999999976434 5679999999997765
No 126
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=46.33 E-value=10 Score=40.87 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=23.8
Q ss_pred cEEEEecccccCCCCC-CCCccccccceeeeccC
Q 008405 323 NVYTFGPTFRAEHSHT-SRHLAEFWMVEPEMAFS 355 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t-~rHlpEFtmLE~e~a~~ 355 (567)
|.|+||+|||.|.... .=+.-||+|+++|.-..
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 8899999999996521 12456999999998753
No 127
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=45.96 E-value=7.8 Score=40.95 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=24.2
Q ss_pred cEEEEecccccCCCCC-CCCccccccceeeeccC
Q 008405 323 NVYTFGPTFRAEHSHT-SRHLAEFWMVEPEMAFS 355 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t-~rHlpEFtmLE~e~a~~ 355 (567)
|.|+||++||.|.... .-+.-||+|+++|.-..
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCC
Confidence 8899999999996532 22456999999998653
No 128
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=45.57 E-value=17 Score=41.50 Aligned_cols=40 Identities=20% Similarity=0.048 Sum_probs=33.0
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeecc------------CCHHHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF------------SDLKDDMNCAEAYVKFM 371 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~------------~d~~~lm~~~E~li~~l 371 (567)
|+||||+||| + .||.+|..=... .|+.++...+|.++..+
T Consensus 569 rlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 569 LLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 9999999999 2 688888875554 57999999999888776
No 129
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=44.03 E-value=35 Score=28.48 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=31.4
Q ss_pred eEEEEeCCccccccCCCCCcEEEEEeEEeCCCCCCcceeEEEEeEEE
Q 008405 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (567)
Q Consensus 81 iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~~~~~~~lEl~~~~i~ 127 (567)
|+||+..+...+...+..|+-|.|+|.+..... ....+=++++.++
T Consensus 50 i~vv~wGk~AE~~~~~~kGs~V~VeGrL~trs~-~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMASVLDRIAPGTVLECVGFLARKHR-SSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEEEEEEEEECC-----CEEEEEEEEE
T ss_pred EEEEEEhHHHHHHhhcCCCCEEEEEEEEEeCcC-CCCeeEEEEeccc
Confidence 899988765443345789999999999986653 2345667776654
No 130
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=43.77 E-value=14 Score=32.40 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=35.9
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC----CCC-cceeEEEEeEEEEecC
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EGT-KQKIELRVQKVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~----~~~-~~~lEl~~~~i~vls~ 131 (567)
+.|++..+... ..+.|+.||.|.|+|.+.... .|. ...+||.+++|..|..
T Consensus 51 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 51 IDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 77777654322 334589999999999987642 221 2347999999999975
No 131
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=43.67 E-value=13 Score=38.73 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=27.6
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|.|+||++||+|..... +.-||+|+++|.-..+
T Consensus 103 rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 103 RLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred EEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 89999999999976433 5579999999987655
No 132
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=42.75 E-value=13 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=28.3
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCCH
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d~ 357 (567)
|.|+||++||+|..... +.-||+|+++|.-..+-
T Consensus 103 rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 103 RLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp EEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCCS
T ss_pred EEEEEcCEecCCCCCCC-ccceeEEeeEEEECCCC
Confidence 89999999999977433 56799999999977653
No 133
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=42.47 E-value=14 Score=36.20 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=42.3
Q ss_pred cceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008405 475 LKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRD 554 (567)
Q Consensus 475 ~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrd 554 (567)
+.+...+|+-+ +|.||. +-.-|++. .|++ --|.++=+--|+|||.|.|-|.+||-|
T Consensus 133 GAwGLGWEVWl-dGMEIT----QFTYFQQv------GGi~-------------c~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 133 GAWGVGWEVWL-DGMEIT----QFTYFQQI------GGIS-------------LKDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp TEEEEEEEEEE-TTEEEE----EEEEEEEB------TTBC-------------CSSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred ccccccceeeE-cceeee----hhhhhhhc------CCcc-------------cCccceeecccHHHHHHHHhCCCceec
Confidence 34667899999 578985 22222211 2333 247788999999999999999999998
Q ss_pred ccc
Q 008405 555 VIP 557 (567)
Q Consensus 555 vi~ 557 (567)
...
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 764
No 134
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=42.23 E-value=8.3 Score=40.98 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=30.3
Q ss_pred cEEEEecccccC-CCCCC-CCccccccceeeeccCCHHHHHHHHH
Q 008405 323 NVYTFGPTFRAE-HSHTS-RHLAEFWMVEPEMAFSDLKDDMNCAE 365 (567)
Q Consensus 323 rVFeI~~~FR~E-~~~t~-rHlpEFtmLE~e~a~~d~~~lm~~~E 365 (567)
|+|+||+|||+| ..+.. --..||+|+|+|.-..+..+.-....
T Consensus 151 rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~ 195 (458)
T 2i4l_A 151 NLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYN 195 (458)
T ss_dssp EEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHH
T ss_pred eeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHH
Confidence 999999999999 33111 02369999999997767655433333
No 135
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=42.00 E-value=58 Score=28.13 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=34.7
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
+|+ .+.|.|.++...| +|++|.++ ++..+..+... ....++.||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G----~FV~l~~~-----~~Glihisel~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG----AFVALDEE-----TQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE----EEEEEETT-----EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe----EEEEECCC-----cEEEEEHHHCCcccccCccccCCCCCEEEEE
Confidence 455 3689999998887 99999653 67777654321 22458899998775
No 136
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=41.39 E-value=16 Score=36.09 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=41.7
Q ss_pred cceEEEEEeeeCCeeEeecchhhhhcHHHHHHHHHHcCCCCCCcHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008405 475 LKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRD 554 (567)
Q Consensus 475 ~~~~~~fDL~~~~~~El~~G~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~PP~gG~GiGiDRLlMll~g~~nIrd 554 (567)
+.+...+|+-+ +|.||. +-.-|++. .|++ --|.++=+--|+|||.|.|-|.+||-|
T Consensus 145 GAWGLGWEVWl-dGMEVT----QFTYFQQv------GGi~-------------c~pv~~EITYGLERlamylQ~vd~vyD 200 (311)
T 3rf1_A 145 GAWGLGWEVWL-DGMEVT----QFTYFQQV------GGIA-------------VDLVSAEITYGLERIAMYLQNVDNVYD 200 (311)
T ss_dssp TEEEEEEEEEE-TTEEEE----EEEEEEEE------TTEE-------------CSSCCEEEEEEHHHHHHHHTTCSSGGG
T ss_pred cccccceEEEE-cCeeEe----eeeeeeee------CCcc-------------ccccceeeehhHHHHHHHHhCCCeeee
Confidence 34667889888 577875 21112110 2332 247788899999999999999999998
Q ss_pred cccc
Q 008405 555 VIPF 558 (567)
Q Consensus 555 vi~F 558 (567)
...=
T Consensus 201 l~w~ 204 (311)
T 3rf1_A 201 IVWS 204 (311)
T ss_dssp SEEE
T ss_pred cccc
Confidence 7653
No 137
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=40.30 E-value=11 Score=39.15 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=23.7
Q ss_pred cEEEEecccccCCCCCCCCccccccceeeeccCC
Q 008405 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rHlpEFtmLE~e~a~~d 356 (567)
|+|+||+|||+|.+. .-+.-||+|+|+|.-..+
T Consensus 103 r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 103 KLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp EEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred EEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 999999999999764 345679999999987765
No 138
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=38.00 E-value=14 Score=39.23 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred CcceeeecHHHHHHHHcCCCCccccccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDVIPF 558 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdvi~F 558 (567)
|+---|||+|||+++|-|.+|.=|+=+|
T Consensus 215 k~IDTGmGLERla~vlQg~~snYdtDlf 242 (465)
T 1yfs_A 215 PNIDTGMGLERIASVLQGKNSNFEIDII 242 (465)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSTTT
T ss_pred CceecCcCHHHHHHHHcCCCccchhhhH
Confidence 6778999999999999999999888554
No 139
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=37.31 E-value=60 Score=27.30 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=34.8
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcccc-------ccCCCCCcEEEEE
Q 008405 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL-------GQLVPTGTCVYVE 105 (567)
Q Consensus 45 ~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~-------~~~l~~gs~V~V~ 105 (567)
..|+. +.|.|.++...| +|++|.++ +...+..+...+ ...++.||.|.|.
T Consensus 29 ~~G~~--~~G~V~~v~~~G----~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGTK--LTGRVTNLTDYG----CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp CSSCE--EEEEEEEEETTE----EEEECSTT-----CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCE----EEEEECCC-----CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 45664 789999999988 89999542 566776544211 2347889988775
No 140
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=37.30 E-value=8.8 Score=43.35 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=25.4
Q ss_pred CcceeeecHHHHHHHHcCCCCcccccccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDVIPFP 559 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdvi~FP 559 (567)
++--.|+|+|||+|++-|.+|+=|+ +|+
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~-~f~ 266 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDA-IFP 266 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HCH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHh-hHH
Confidence 6789999999999999999999998 664
No 141
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=36.89 E-value=59 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=33.9
Q ss_pred eEEEEeCC-ccc-cccCCCCCcEEEEEeEEeCCC----CC-CcceeEEEEe----EEEEecC
Q 008405 81 LQVIVDKD-VAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQ----KVVDVGM 131 (567)
Q Consensus 81 iQvv~~~~-~~~-~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl~~~----~i~vls~ 131 (567)
+.|++..+ ... ..+.|+.|+.|.|+|.+.... .+ ....+||.++ +|++|+.
T Consensus 76 i~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~s 137 (193)
T 3pgz_A 76 HNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDG 137 (193)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-
T ss_pred EEEEEECHHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcC
Confidence 77777653 322 234699999999999987542 22 2245788888 5677764
No 142
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=36.72 E-value=35 Score=29.65 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=35.1
Q ss_pred eEEEEeCC-ccc-cccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEEecCC
Q 008405 81 LQVIVDKD-VAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (567)
Q Consensus 81 iQvv~~~~-~~~-~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~vls~~ 132 (567)
+.|++-.+ ... ..+.|..|+.|.|+|.+....- | ....+||.+++|.+|+..
T Consensus 69 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 69 HRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 56666652 322 3456999999999999987531 2 224589999999999753
No 143
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=36.04 E-value=12 Score=40.90 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=32.1
Q ss_pred cEEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHSHTSRH----LAEFWMVEPEMAFSDLKDDMNCAEA 366 (567)
Q Consensus 323 rVFeI~~~FR~E~~~t~rH----lpEFtmLE~e~a~~d~~~lm~~~E~ 366 (567)
|+|+||+|||+|.+ + +| .-||+|.|+|.-..+-.+.....+.
T Consensus 131 r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~ 176 (572)
T 2j3l_A 131 NLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRD 176 (572)
T ss_dssp EEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHH
T ss_pred hhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHH
Confidence 99999999999986 2 33 3599999999877766655544444
No 144
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=35.78 E-value=1.5e+02 Score=29.09 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=45.1
Q ss_pred CCCEEEEEEEEEeeee----cCCceeEEEEEecCCCCceeEEEEeCCccccccCC-CCCcEEEEEeEEeCCC
Q 008405 46 AGRQVRVGGWVKTGRE----QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV-PTGTCVYVEGMLKNPP 112 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~----~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~~~~l-~~gs~V~V~G~v~~~~ 112 (567)
.|+.|.|-|.|..++. .|+.-.+-+.|.|.+.. .|+|.+-.........+ ..||+|.+...-...-
T Consensus 14 ~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~-gl~v~iF~~~~~~LP~v~~~GDII~l~~vki~~~ 84 (294)
T 1xjv_A 14 GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV-KLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVY 84 (294)
T ss_dssp SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC-EEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEE
T ss_pred CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC-CEEEEEECCChHHCCCCCCCCCEEEEEEEEEEEE
Confidence 3778899999976543 56556777888998753 58887654332222334 8999999998665543
No 145
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=33.43 E-value=36 Score=38.71 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=51.2
Q ss_pred CCCCEEEEEEEEEeeee--cCCceeEEEEEecCCCCceeEEEEeCCcccc-ccCCCC--CcEEEEEeEEeCCCCCCccee
Q 008405 45 LAGRQVRVGGWVKTGRE--QGKGSFAFLEVNDGSCPANLQVIVDKDVADL-GQLVPT--GTCVYVEGMLKNPPEGTKQKI 119 (567)
Q Consensus 45 ~~g~~V~v~GwV~~iR~--~gk~~l~FidLrD~~~~~~iQvv~~~~~~~~-~~~l~~--gs~V~V~G~v~~~~~~~~~~l 119 (567)
..|+.|+|.|.|.+... .|+++..=+.+.|++|. ++++.-+.. | .+.++. |..|.|.|+|...+. .+.+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~f~~~--~~~~~~~~~~g~~~~~~G~~~~~~~--~~~~ 236 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQD--YLQTYLKQLTGKEVFVTGTVKSNAY--TGQY 236 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCC--TTHHHHHTTCSSCEEEEEEECSCCT--TSSC
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCce--EEEEEECcH--HHHhhCccCCCCEEEEEEEEEEccC--CCcE
Confidence 35889999999977532 23223454677898874 998876532 3 234667 999999999976310 1245
Q ss_pred EEEEeEEEEe
Q 008405 120 ELRVQKVVDV 129 (567)
Q Consensus 120 El~~~~i~vl 129 (567)
++.--++.+.
T Consensus 237 ~~~~p~~~~~ 246 (780)
T 1gm5_A 237 EIHNAEVTPK 246 (780)
T ss_dssp CEEEEEEECS
T ss_pred EEEcCEEeec
Confidence 5655555543
No 146
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=32.69 E-value=16 Score=38.48 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.3
Q ss_pred CcceeeecHHHHHHHHcCCCCccccccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDVIPF 558 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdvi~F 558 (567)
|+---|||+|||+++|-|.+|+=|+=+|
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf 259 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLF 259 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHH
T ss_pred CceecCCCHHHHHHHHcCCCccccchhH
Confidence 5678999999999999999999887444
No 147
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=32.14 E-value=42 Score=27.89 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc------ccccCCCCCcEEEEE
Q 008405 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (567)
Q Consensus 45 ~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~------~~~~~l~~gs~V~V~ 105 (567)
..|+. +.|.|.++...| +|++|.++ +..++..+.. +....++.||.|.|.
T Consensus 30 ~~G~i--v~G~V~~v~~~G----~fV~l~~~-----~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 30 KKGAI--VTGKVTAVDAKG----ATVELADG-----VEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp CSSSE--EEEEEEEECSSC----EEEECSTT-----CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCe----EEEEECCC-----CEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 34664 779999999887 89999653 3333443321 122357889988765
No 148
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=31.61 E-value=13 Score=42.05 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.7
Q ss_pred CcceeeecHHHHHHHHcCCCCcccccccc
Q 008405 531 KHSGFGLGFERMILFATGIDNIRDVIPFP 559 (567)
Q Consensus 531 P~gG~GiGiDRLlMll~g~~nIrdvi~FP 559 (567)
|+---|||+|||++++-|.+|.=|+ +|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 5677899999999999999999888 664
No 149
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.41 E-value=96 Score=24.60 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=44.3
Q ss_pred CChhhHHHHHHHHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHHHhhh
Q 008405 227 PSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEER 279 (567)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (567)
+..+...+....|++.|..+..++..+...+.+.++++.+-.++.....++..
T Consensus 10 ~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~tg~ 62 (79)
T 2djv_A 10 AKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGK 62 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhcCC
Confidence 34455667788999999999999999999999999999999988777766544
No 150
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.50 E-value=68 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-c------cccCCCCCcEEEEE
Q 008405 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-D------LGQLVPTGTCVYVE 105 (567)
Q Consensus 45 ~~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~------~~~~l~~gs~V~V~ 105 (567)
..|+. +.|.|.++...| +|++|.+... .+...+..+.. . ....++.||.|.|.
T Consensus 11 ~vG~i--~~G~V~~v~~fG----~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGDI--YNGKVTSIMQFG----CFVQLEGLRK--RWEGLVHISELRREGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp CTTCE--EEEEEEEECSSC----EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeccE----EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccEeCCCCEEEEE
Confidence 34554 679999999988 8999975210 15666654432 1 11247888888765
No 151
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=30.33 E-value=94 Score=28.37 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=32.0
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
.|+. +.|.|.++...| +|++|.+..+ +...+..+... ....++.||.|.|.
T Consensus 15 ~G~i--v~G~V~~i~~fG----aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDDI--VMVNVQQIAEMG----AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCCE--EEEEEEEEecce----EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 4554 679999999988 9999943222 56666654421 12346777777654
No 152
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=29.11 E-value=84 Score=28.95 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=31.2
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCccc------cccCCCCCcEEEEE
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~~------~~~~l~~gs~V~V~ 105 (567)
+|+. +.|.|.++...| +|++|.+..+ +...+.-+... ....++.||.|.|.
T Consensus 15 ~G~i--v~G~V~~I~~fG----aFV~L~e~~g---~eGLvhiSels~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VEDV--VMVNVRSIAEMG----AYVSLLEYNN---IEGMILLSELSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTCE--EEEEEEEECSSE----EEEEETTTTT---EEEEEEGGGC------------CTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE----EEEEEccCCC---cEEEEEHHHCCCcccCCHHHhcCCCCEEEEE
Confidence 4554 689999999988 9999954322 67777654421 12336667766554
No 153
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=28.13 E-value=56 Score=27.51 Aligned_cols=47 Identities=30% Similarity=0.312 Sum_probs=31.8
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEE
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVV 127 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~ 127 (567)
+.|++..+... ..+.++.||-|.|+|.+....- | .....||.+++|.
T Consensus 55 i~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 55 LKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 77777765533 2456999999999999976532 2 2345788888764
No 154
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.16 E-value=68 Score=27.04 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEecCCCCceeEEEEeCCcc-c------cccCCCCCcEEEEE
Q 008405 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-D------LGQLVPTGTCVYVE 105 (567)
Q Consensus 46 ~g~~V~v~GwV~~iR~~gk~~l~FidLrD~~~~~~iQvv~~~~~~-~------~~~~l~~gs~V~V~ 105 (567)
.|+. +.|.|.++...| +|++|..+ + +..++..+.. + ..+.++.||.|.|.
T Consensus 21 ~G~i--~~G~V~~v~~fG----~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 21 PGML--LTGTVSSLEDHG----YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp TTCE--EEEEEEEECSSE----EEEECCCS-S---CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCce----EEEEECCC-C---eEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 4554 679999999988 89999622 1 4455543331 1 12468999999875
No 155
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=25.50 E-value=48 Score=24.87 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=33.0
Q ss_pred HHHhhhhHHHhhhccccchhhhhhhHHHHHHHHHHHHH
Q 008405 238 VIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAK 275 (567)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (567)
.|++.|..++.+++++...+++.++++.+-.+|.....
T Consensus 5 ~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~ 42 (59)
T 1d2d_A 5 KIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKE 42 (59)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999887755554
No 156
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=23.71 E-value=1.5e+02 Score=26.92 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCceeEEEEEec---CC--CCceeEEEEeCCcc------ccccCCCCCcEEEEE
Q 008405 52 VGGWVKTGREQGKGSFAFLEVND---GS--CPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (567)
Q Consensus 52 v~GwV~~iR~~gk~~l~FidLrD---~~--~~~~iQvv~~~~~~------~~~~~l~~gs~V~V~ 105 (567)
|.|+|.++...| +|++|.. +. -...++-++..+.. +....++.||.|.++
T Consensus 61 V~G~V~~V~~~g----a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~ak 121 (179)
T 3m7n_A 61 VLGRVVDLRNSI----ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKAR 121 (179)
T ss_dssp EEEEEEEECSSE----EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEE
T ss_pred EEEEEEEEeCCc----EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEE
Confidence 669999997755 9999965 11 00136777764431 223468999999876
No 157
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=23.45 E-value=36 Score=30.15 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=35.6
Q ss_pred eeEEEEeCCccc-cccCCCCCcEEEEEeEEeCCC----CC-CcceeEE---EEeEEEEecC
Q 008405 80 NLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIEL---RVQKVVDVGM 131 (567)
Q Consensus 80 ~iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~----~~-~~~~lEl---~~~~i~vls~ 131 (567)
-+.|++..+... +.+.|+.||.|.|+|.+.... .| ....+|| .+++|..|..
T Consensus 54 ~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~ 114 (145)
T 1qvc_A 54 WHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 114 (145)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCC
T ss_pred EEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccC
Confidence 377777765432 334699999999999987643 22 1234688 7888888864
No 158
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=22.38 E-value=79 Score=29.66 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=32.6
Q ss_pred eEEEEeCCccc-cccCCCCCcEEEEEeEEeCCCC----C-CcceeEEEEeEEEE
Q 008405 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVD 128 (567)
Q Consensus 81 iQvv~~~~~~~-~~~~l~~gs~V~V~G~v~~~~~----~-~~~~lEl~~~~i~v 128 (567)
+.|++-.+... +.+.|++|+.|.|+|.+....- + +...+||.|++|..
T Consensus 55 i~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 67777665422 3456999999999999986532 2 23457888887764
No 159
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=22.10 E-value=3e+02 Score=22.45 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=42.0
Q ss_pred CCCCCEEEEEEEEEeeeecC-C-ceeEEEE-EecCCCC--ceeEEEEeCCccccccCCCCCcEEEEEeEEeCCC
Q 008405 44 GLAGRQVRVGGWVKTGREQG-K-GSFAFLE-VNDGSCP--ANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 44 ~~~g~~V~v~GwV~~iR~~g-k-~~l~Fid-LrD~~~~--~~iQvv~~~~~~~~~~~l~~gs~V~V~G~v~~~~ 112 (567)
.+.|+-|.|+|-|..||+.. - +...||+ .||.... ..+-.-+......-.+.|..|++..+.|.|....
T Consensus 46 dylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvealsngsvativgqvhqvq 119 (133)
T 3f1z_A 46 DYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTTCCTTSEEEEEEECCCCC
T ss_pred hhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHhhcCCceeeEeeeeeeee
Confidence 46799999999999987643 0 0245654 4776432 1122221111101135689999999999987654
No 160
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=21.96 E-value=72 Score=27.20 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=34.7
Q ss_pred eEEEEeC-Cccc-cccCCCCCcEEEEEeEEeCC----C--CC-CcceeEEEEe----EEEEecC
Q 008405 81 LQVIVDK-DVAD-LGQLVPTGTCVYVEGMLKNP----P--EG-TKQKIELRVQ----KVVDVGM 131 (567)
Q Consensus 81 iQvv~~~-~~~~-~~~~l~~gs~V~V~G~v~~~----~--~~-~~~~lEl~~~----~i~vls~ 131 (567)
+.|++-. .... ..+.|+.|+.|.|+|.+... + .| .....||.++ +++.|+.
T Consensus 56 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 56 HRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 7777766 4322 34469999999999998753 2 23 2245899997 8888865
No 161
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.16 E-value=1.8e+02 Score=28.06 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=16.3
Q ss_pred ccCCCCCcEEEEEeEEeCCC
Q 008405 93 GQLVPTGTCVYVEGMLKNPP 112 (567)
Q Consensus 93 ~~~l~~gs~V~V~G~v~~~~ 112 (567)
...+++||-|.|+|.+...+
T Consensus 222 vd~~~PGDrV~vtGI~~~~~ 241 (268)
T 2vl6_A 222 VDSARPGDRVKVTGILDIKQ 241 (268)
T ss_dssp TTSSCTTCEEEEEEEEEEEC
T ss_pred cCcccCCCEEEEEEEEEEee
Confidence 34678999999999987654
No 162
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=20.47 E-value=22 Score=37.73 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=34.5
Q ss_pred cEEEEecccccCCC-CCC-CCccccc-cceeeeccCCHHHHHHHHHHHHH
Q 008405 323 NVYTFGPTFRAEHS-HTS-RHLAEFW-MVEPEMAFSDLKDDMNCAEAYVK 369 (567)
Q Consensus 323 rVFeI~~~FR~E~~-~t~-rHlpEFt-mLE~e~a~~d~~~lm~~~E~li~ 369 (567)
|+|+||+|||+|.. ... .-.-||+ |.|.+..+.+..+.....++++.
T Consensus 127 rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 127 KIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp CEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 89999999999976 111 0224999 99999988887776655444443
Done!