RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008405
(567 letters)
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 1028 bits (2660), Expect = 0.0
Identities = 450/572 (78%), Positives = 513/572 (89%), Gaps = 5/572 (0%)
Query: 1 MADNELP-VDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVK 57
M D +P +Q+A + L +D VQ+ QFSDRVLI+SIL RPDGGAGLAG++VR+GGWVK
Sbjct: 1 MGDEIVPPANQLAAVSLENDGSTVQKAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVK 60
Query: 58 TGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--GT 115
TGREQGKG+FAFLEVNDGSCPANLQV+VD + DL LV TGTCV V+G+LK PPE GT
Sbjct: 61 TGREQGKGTFAFLEVNDGSCPANLQVMVDSSLYDLSTLVATGTCVTVDGVLKVPPEGKGT 120
Query: 116 KQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYA 175
KQKIEL V+KV+DVG VDP KYP+PKTKLTLEFLRD + R RTN+I+AVARIRNALA+A
Sbjct: 121 KQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFA 180
Query: 176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA 235
TH+F Q+ FLYIHTPIITTSDCEGAGEMFQVTTLI+ ++LE++LI NPPP+EAD+EAA
Sbjct: 181 THSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAA 240
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L++KE+GE VA+LK+ KA +E I+A+V EL AKE+LA +EERSKLKPG+P+KDGKIDY
Sbjct: 241 RLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDY 300
Query: 296 TQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS 355
++DFF RQAFLTVSGQLQVETYACA+S+VYTFGPTFRAE+SHTSRHLAEFWMVEPE+AF+
Sbjct: 301 SKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA 360
Query: 356 DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415
DL+DDMNCAEAYVK+MC WLLD CFDDME MAKN+D CI+RLRMVASTPF RITYTEA+
Sbjct: 361 DLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAI 420
Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL 475
ELLE AV +GK F+N VEWGIDLASEHERYLTEV FQKP+IVYNYPKGIKAFYMRLNDD
Sbjct: 421 ELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE 480
Query: 476 KTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGF 535
KTVAAMDVLVPKVGELIGGSQREERYDVIK RIE+MGLP+EPYEWYLDLRR+GTVKH GF
Sbjct: 481 KTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGF 540
Query: 536 GLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
GLGFERMILFATGIDNIRDVIPFPRYPG+ADL
Sbjct: 541 GLGFERMILFATGIDNIRDVIPFPRYPGKADL 572
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase.
Length = 633
Score = 619 bits (1599), Expect = 0.0
Identities = 277/506 (54%), Positives = 365/506 (72%), Gaps = 12/506 (2%)
Query: 66 SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNP-PEGTKQKIELRVQ 124
S A+L ++DGSC A+LQV+VD +A L QL+ TGTC+ EG+LK P P K IEL V+
Sbjct: 134 SVAYLLISDGSCVASLQVVVDSALAPLTQLMATGTCILAEGVLKLPLPAQGKHVIELEVE 193
Query: 125 KVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQG 184
K++ +G VDP KYP+ K +L L+ LRD FRPRT T+A+V R+R+AL +ATHTF Q G
Sbjct: 194 KILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHG 253
Query: 185 FLYIHTPIITTSDCEGAGEMFQVTTLIS-DADKLEKELIKNPPPSEAD---IEAAKLVIK 240
FLY+ PIITT+D G GEMF+VTTL+ DK EK P E + +EA K IK
Sbjct: 254 FLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEK-----KPVHETEGISLEAVKAAIK 308
Query: 241 EKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFF 300
EK V +LK ++ REA+ A+ +L K + ++LE + KLK G K K+ +++DFF
Sbjct: 309 EKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFF 368
Query: 301 ARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDD 360
+R +LTVSG+L +E+YACA+ NVYTFGP FRA+ ++RHLAE WMVE EMAFS+L+D
Sbjct: 369 SRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDA 428
Query: 361 MNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEV 420
MNCAE Y KF+C W+L++C +DM+F++K DK+ RL + S+ +RI+YTEAV+LL+
Sbjct: 429 MNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQ 488
Query: 421 AVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAA 480
A K FE K EWGI L +EH YL + ++KPVI+YNYPK +K FY+RLNDD KTVAA
Sbjct: 489 ATD--KKFETKPEWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLNDDGKTVAA 546
Query: 481 MDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFE 540
D++VPKVG +I GSQ EER D++ +RIE++GLP E YEWYLDLRR GTVKHSGF LGFE
Sbjct: 547 FDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFE 606
Query: 541 RMILFATGIDNIRDVIPFPRYPGRAD 566
M+LFATG+ ++RD IPFPR G+A+
Sbjct: 607 LMVLFATGLPDVRDAIPFPRSWGKAN 632
Score = 55.6 bits (134), Expect = 4e-08
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 25 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGK 64
++S+RV++K+IL R DGGAGL G++V VGGWVK+ +E K
Sbjct: 25 KYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKK 64
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 528 bits (1364), Expect = 0.0
Identities = 174/273 (63%), Positives = 219/273 (80%), Gaps = 3/273 (1%)
Query: 294 DYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
D+++DFF ++A+LTVSGQL E YA A+ VYTFGPTFRAE+S+T RHLAEFWM+EPEMA
Sbjct: 180 DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMA 239
Query: 354 FSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTE 413
F+DL+D+M+ AE +K++ ++L++C DD+EF+ + DK I RL +PF RITYTE
Sbjct: 240 FADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTE 299
Query: 414 AVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND 473
A+E+L+ K GK FE VEWG DL SEHERYL E F+KPV V NYPK IKAFYMRLN
Sbjct: 300 AIEILQ---KSGKKFEFPVEWGDDLGSEHERYLAEEHFKKPVFVTNYPKDIKAFYMRLNP 356
Query: 474 DLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHS 533
D KTVAAMD+L P +GE+IGGSQREER DV+++RI+++GL E Y WYLDLRR+G+V HS
Sbjct: 357 DGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHS 416
Query: 534 GFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566
GFGLGFER++ + TG+DNIRDVIPFPR PGRA+
Sbjct: 417 GFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449
Score = 215 bits (551), Expect = 6e-64
Identities = 86/190 (45%), Positives = 112/190 (58%), Gaps = 11/190 (5%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDK- 87
RV IK IL G++V V GWV+T R+ GK AFL++ DGSC LQV+ D
Sbjct: 3 RVSIKDILKGK-----YVGQEVTVRGWVRTKRDSGK--IAFLQLRDGSCFKQLQVVKDNG 55
Query: 88 -DVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTL 146
+ + + + TG+ V V G + P Q EL+ K+ +G DP YPI K + ++
Sbjct: 56 EEYFEEIKKLTTGSSVIVTGTVVESP-RAGQGYELQATKIEVIGE-DPEDYPIQKKRHSI 113
Query: 147 EFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQ 206
EFLR+ RPRTN AV RIRN LA A H F + GF+++ TPIIT SDCEGAGE+F+
Sbjct: 114 EFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFR 173
Query: 207 VTTLISDADK 216
VTTL D K
Sbjct: 174 VTTLDLDFSK 183
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional.
Length = 586
Score = 507 bits (1306), Expect = e-175
Identities = 247/536 (46%), Positives = 329/536 (61%), Gaps = 45/536 (8%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT--CVYV 104
+ + V GW K R+QG G F F+ +NDGSC NLQ+IVD+ + + +L+ G C
Sbjct: 81 DQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGVGCCFRF 140
Query: 105 EGMLKNPP---EGTKQKIELRVQKVVDVGMV----------DPAKYPIPKTKLTLEFLRD 151
G L P E K ++ V+ + + DP KYP+ K EFLR+
Sbjct: 141 TGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLRE 200
Query: 152 RIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLI 211
RPR+ I++V RIRNALA ATH F Q +GFLYIHTP+ITTSDCEG GEMF VTTL+
Sbjct: 201 VAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLL 260
Query: 212 SDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKE 271
+ +AD A V K RE I + A
Sbjct: 261 GE---------------DADYRAIP--------RVNKKNKKGEKREDILNTCN----ANN 293
Query: 272 NLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTF 331
N + + IDY +DFF++QAFLTVSGQL +E ++ +VYTFGPTF
Sbjct: 294 NNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTF 353
Query: 332 RAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYD 391
RAE+SHTSRHLAEFWM+EPE+AF+DL D+M AE+Y+K+ ++L++ FDD+ + +N +
Sbjct: 354 RAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVE 413
Query: 392 KSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKF 451
I+RL+ + F +ITYT ++LL FE V+WG+DL SEHER++ E F
Sbjct: 414 TGLISRLKNILDEDFAKITYTNVIDLL---QPYSDSFEVPVKWGMDLQSEHERFVAEQIF 470
Query: 452 QKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM 511
+KPVIVYNYPK +KAFYM+LN+D KTVAAMDVLVPK+GE+IGGSQRE+ + + I++
Sbjct: 471 KKPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEK 530
Query: 512 GLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
L +E Y WY LR+FG+ H+GFGLGFER+I+ TG+DNI+D IPFPRYPG A+
Sbjct: 531 KLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase. In a multiple
sequence alignment of representative asparaginyl-tRNA
synthetases (asnS), archaeal/eukaryotic type
aspartyl-tRNA synthetases (aspS_arch), and bacterial
type aspartyl-tRNA synthetases (aspS_bact), there is a
striking similarity between asnS and aspS_arch in gap
pattern and in sequence, and a striking divergence of
aspS_bact. Consequently, a separate model was built for
each of the three groups. This model, asnS, represents
asparaginyl-tRNA synthetases from the three domains of
life. Some species lack this enzyme and charge tRNA(asn)
by misacylation with Asp, followed by transamidation of
Asp to Asn [Protein synthesis, tRNA aminoacylation].
Length = 453
Score = 414 bits (1065), Expect = e-140
Identities = 156/278 (56%), Positives = 214/278 (76%), Gaps = 3/278 (1%)
Query: 289 KDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMV 348
G ID++QDFF ++A+LTVSGQL +ETYA A+S VYTFGPTFRAE S+TSRHL+EFWM+
Sbjct: 178 STGNIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMI 237
Query: 349 EPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408
EPEMAF++L D + AE +K++ +L++C +++F+ KN+DK I RL + + F R
Sbjct: 238 EPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFAR 297
Query: 409 ITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY 468
ITYT+A+E+L+ + K+FE + WG DL +EHER+L E F+ PV V NYPK IKAFY
Sbjct: 298 ITYTDAIEILK---ESDKNFEYEDFWGDDLQTEHERFLAEEYFKPPVFVTNYPKDIKAFY 354
Query: 469 MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFG 528
M+LNDD KTVAAMD+L P +GE+IGGS+RE+ D +++R+++MGL + WYLDLR++G
Sbjct: 355 MKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYG 414
Query: 529 TVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566
+V HSGFGLGFER++ + TG++NIRD IPFPR PG +
Sbjct: 415 SVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNIN 452
Score = 179 bits (456), Expect = 2e-50
Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 34 SILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-- 91
+I G +V V GWV+T R K FLE+NDGS +Q +++ +
Sbjct: 3 AIKDLLQQVYKFVGDEVTVSGWVRTKRSSKK--IIFLELNDGSSLGPIQAVINGEDNPYL 60
Query: 92 --LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFL 149
L + + TG+ V V G + G Q +EL+V+K+ VG +P YP+ K + +LEFL
Sbjct: 61 FQLLKSLTTGSSVSVTGKVV-ESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFL 119
Query: 150 RDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 209
RD R RTNT+ AV R+RNAL+ A H + Q+ GF ++ PI+T++DCEGAGE+F+V+T
Sbjct: 120 RDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVST 179
Query: 210 LISDADK 216
D +
Sbjct: 180 GNIDFSQ 186
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 404 bits (1040), Expect = e-135
Identities = 177/285 (62%), Positives = 227/285 (79%), Gaps = 5/285 (1%)
Query: 285 GIPQ-KDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343
IP+ KDG ID++QDFF + AFLTVSGQL ETYA A+S+VYTFGPTFRAE+S+TSRHLA
Sbjct: 284 DIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLA 343
Query: 344 EFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403
EFWM+EPE+AF+DL DDM CA AY++++ ++L++C +DMEF +K I+RL V
Sbjct: 344 EFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVE 403
Query: 404 TPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQ-KPVIVYNYPK 462
F +++YT+A+ELL +K K FE V+WG+DL SEHERY+TE F +PVI+ +YPK
Sbjct: 404 KNFVQLSYTDAIELL---LKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPK 460
Query: 463 GIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYL 522
IKAFYMR NDD KTVAAMD+LVP+VGELIGGSQREER + +++R++++ L E Y WYL
Sbjct: 461 EIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYL 520
Query: 523 DLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
DLRR+G+V H+GFGLGFER++ FATGIDNIRD IPFPR PG A+
Sbjct: 521 DLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPGSAEF 565
Score = 196 bits (500), Expect = 9e-56
Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 25 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVI 84
+F ++ I + D G G+ + V GWV+T R Q S F+EVNDGSC +N+Q +
Sbjct: 85 EFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 142
Query: 85 VDKDVADLGQ----LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP 140
+ D Q L+ TG V V+G + + +G KQK+EL+V K+V VG DP+ YPI
Sbjct: 143 MTPDAEGYDQVESGLITTGASVLVQGTVVSS-QGGKQKVELKVSKIVVVGKSDPS-YPIQ 200
Query: 141 KTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEG 200
K +++ EFLR + RPRTNT AVAR+RNALAYATH F Q+ GF+++ +PIIT SDCEG
Sbjct: 201 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 260
Query: 201 AGEMFQVTTLISDADKLEKELIKNPPPSE 229
AGE F VTTLI ++ + L+ + P ++
Sbjct: 261 AGEQFCVTTLIPNSAENGGSLVDDIPKTK 289
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 373 bits (960), Expect = e-125
Identities = 140/269 (52%), Positives = 186/269 (69%), Gaps = 12/269 (4%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
D+F ++A+LT S QL E A A+ V+T GPTFRAE S+T RHL+EFWM++PEMAF+DL
Sbjct: 176 DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADL 235
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
D M+ AE +K++ +L+ C D++EF+ ++ + L+ S PF RITY EA+E+
Sbjct: 236 NDVMDLAEELIKYLFKKVLEECADELEFLGRDNSE-----LKRPESAPFPRITYKEAIEI 290
Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDD-LK 476
LE + KVEWG DL +EHERYL E F+ PV V NYPK IK FYMR + D
Sbjct: 291 LE------EKGFEKVEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPG 344
Query: 477 TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFG 536
TVA+ D+L P GE+IGGSQRE YD++ RI++ GL E YEWYLDLR++G H+GFG
Sbjct: 345 TVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFG 404
Query: 537 LGFERMILFATGIDNIRDVIPFPRYPGRA 565
LG ER++++ G+DNIR+ IPFPR PGR
Sbjct: 405 LGLERLVMYILGLDNIREAIPFPRDPGRL 433
Score = 151 bits (384), Expect = 3e-40
Identities = 67/195 (34%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 26 FSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV 85
R IK I G ++V V GWV R+ GK FL + DGS +Q +V
Sbjct: 1 MMKRTYIKDIKPHVGG------QEVTVRGWVHNKRDLGK--IIFLVLRDGSGF--IQAVV 50
Query: 86 DK-----DVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP 140
K ++ +L + V V G++K Q EL+V+K+ +G DP YPI
Sbjct: 51 PKNKVYEELFKAKKL-TLESSVVVTGIVK-ASPKAPQGFELQVEKIEVLGEADP-PYPID 107
Query: 141 KTKLT-LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCE 199
K + + LE L D RT I AV +IR+++ A F + GF +HTPIIT S E
Sbjct: 108 KKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATE 167
Query: 200 GAGEMFQVTTLISDA 214
G GE+F+V +A
Sbjct: 168 GGGELFKVDYFDKEA 182
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
core domain. Assignment to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure and the
presence of three characteristic sequence motifs in the
core domain. This family includes AsnRS as well as a
subgroup of AspRS. AsnRS and AspRS are homodimers,
which attach either asparagine or aspartate to the 3'OH
group of ribose of the appropriate tRNA. While archaea
lack asnRS, they possess a non-discriminating aspRS,
which can mischarge Asp-tRNA with Asn. Subsequently, a
tRNA-dependent aspartate amidotransferase converts the
bound aspartate to asparagine. The catalytic core domain
is primarily responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate.
Length = 322
Score = 366 bits (941), Expect = e-123
Identities = 123/275 (44%), Positives = 174/275 (63%), Gaps = 13/275 (4%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + +F + A+L S QL E A+ VY GP FRAE S+T RHL+EFWM+E
Sbjct: 59 GAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEA 118
Query: 351 EMAF-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERI 409
EMAF D + M+ E +K++ +L+ C ++E + + +NR + PF RI
Sbjct: 119 EMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ------LNRELLKPLEPFPRI 172
Query: 410 TYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM 469
TY EA+ELL ++G E +V+WG DL++EHER L E+ PV V +YPK IK FYM
Sbjct: 173 TYDEAIELLR---EKGV--EEEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEIKPFYM 227
Query: 470 RLNDD-LKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFG 528
+ +DD +TV + D+L+P VGE++GGSQR YD ++ RI++ GL E +EWYLDLR++G
Sbjct: 228 KPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYG 287
Query: 529 TVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563
H GFGLG ER++++ G+DNIR+ I FPR P
Sbjct: 288 MPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322
Score = 78.4 bits (194), Expect = 8e-16
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 143 KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG 202
LE L D RT + A+ RIR+ + A FL++ GF +HTP IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 203 EMFQVT 208
E+F+V+
Sbjct: 61 ELFKVS 66
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 345
Score = 215 bits (551), Expect = 3e-65
Identities = 79/291 (27%), Positives = 127/291 (43%), Gaps = 44/291 (15%)
Query: 299 FFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
F+A++A+L S QL + A V+ P FR E T RH EF ++ EM+F D
Sbjct: 67 FYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDY 126
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
+D M+ E +K++ + + K + + + F RITY EA+E
Sbjct: 127 EDVMDLTEDLIKYVFK----------KVLGKREELELLG----IELPEFPRITYAEAIER 172
Query: 418 L-----------------------EVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKP 454
E V G + E L + P
Sbjct: 173 YGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEENLGDKDKDNP 232
Query: 455 VIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPKVGELIGGSQREERYDVIKSRIEDMGL 513
V V ++P FYM ++D +A D+++ GE+ GGS R + + R E++GL
Sbjct: 233 VFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLNG-GEIGGGSIRIHDPEEQRKRFEELGL 291
Query: 514 ----PLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
E + +YLD ++G H G GLG +R+++ TG+++IR+VI FP+
Sbjct: 292 DPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLESIREVIAFPK 342
Score = 53.0 bits (128), Expect = 2e-07
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
R + A ++R+ + A FL ++GFL + TPI+T S EG F V
Sbjct: 14 RRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARDFLV 63
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.
Length = 437
Score = 184 bits (469), Expect = 3e-52
Identities = 94/280 (33%), Positives = 146/280 (52%), Gaps = 36/280 (12%)
Query: 292 KIDYTQDFFARQAFLTVSGQLQVETY-----ACAVSNVYTFGPTFRAEHSHTSRHLAEFW 346
IDY F ++A+L S QL Y V+ GP FRAE +TSRHL E+
Sbjct: 176 PIDY----FEKEAYLAQSPQL----YKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYT 227
Query: 347 MVEPEMAFSDL-KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTP 405
++ EM F D +D M+ E +++M + + ++C ++E + + V TP
Sbjct: 228 SIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELL--GIELP-------VPETP 278
Query: 406 FERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYP 461
RITY EA+E+L+ +G N++ WG DL +E ER Y+ E + +YP
Sbjct: 279 IPRITYDEAIEILK---SKG----NEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYP 331
Query: 462 KGIKAFY-MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEW 520
+ FY M DD + + D+L + E+ G QR RYD++ I++ GL E +E+
Sbjct: 332 SEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEF 390
Query: 521 YLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
YL+ ++G H GFGLG ER+ + G++NIR+ + FPR
Sbjct: 391 YLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPR 430
Score = 62.9 bits (154), Expect = 2e-10
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDK- 87
R L + L G +V + GWV R+ G AFL + D S +QV+V K
Sbjct: 4 RHLTSEL------TPELDGEEVTLAGWVHEIRDLGG--IAFLILRDRS--GIIQVVVKKK 53
Query: 88 ---DVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP---- 140
++ + + + + V V G +K +E+ +++ +++ A+ P+P
Sbjct: 54 VDEELFETIKKLKRESVVSVTGTVK-ANPKAPGGVEVIPEEIE---VLNKAEEPLPLDIS 109
Query: 141 -KTKLTLEFLRDRIPF---RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196
K L+ D RPR A+ +IR+ + A FL + GF I TP I S
Sbjct: 110 GKVLAELDTRLDNRFLDLRRPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVAS 166
Query: 197 DCEGAGEMFQVT 208
EG E+F +
Sbjct: 167 GTEGGAELFPID 178
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed.
Length = 335
Score = 177 bits (450), Expect = 1e-50
Identities = 90/288 (31%), Positives = 146/288 (50%), Gaps = 23/288 (7%)
Query: 284 PGIPQKDGKI--DYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAE--HSHTS 339
P + + DF+ + +L S L + + ++ P FR E T
Sbjct: 63 PLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTG 122
Query: 340 RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLR 399
RHL EF ++ E+ +DL + M+ E +K++ LL+ D++EF ++ + L
Sbjct: 123 RHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFGRD-----LPHL- 176
Query: 400 MVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYN 459
PF+RIT+ EAVE+L G E L SE E+ L+E F++P + +
Sbjct: 177 ---KRPFKRITHKEAVEILNEEGCRGIDLEE-------LGSEGEKSLSE-HFEEPFWIID 225
Query: 460 YPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEP 517
PKG + FY R + + V D+L+P+ GE + G +RE Y+ I RI + G+ E
Sbjct: 226 IPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEK 285
Query: 518 YEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 565
Y+WYL++ + G + +GFG+G ER+ + G+ +IR+V PFPR PG
Sbjct: 286 YKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGIV 333
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA
synthetase. In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_arch, represents
aspartyl-tRNA synthetases from the eukaryotic cytosol
and from the Archaea. In some species, this enzyme
aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn)
is subsequently transamidated to Asn-tRNA(asn) [Protein
synthesis, tRNA aminoacylation].
Length = 428
Score = 145 bits (368), Expect = 3e-38
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 20/268 (7%)
Query: 299 FFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F R+AFL S QL + A VY GP FRAE +T RHL E ++ EMAF D
Sbjct: 176 YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDH 235
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
D M+ E V + + + + C +E + +K F R+TY EA+E+
Sbjct: 236 HDVMDILEELVVRVFEDVPERCAHQLETLEFKLEKP---------EGKFVRLTYDEAIEM 286
Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY-MRLNDDLK 476
E E DL++E E+ L E + + ++P I+ FY M D+ +
Sbjct: 287 ANAKGVEIGWGE-------DLSTEAEKALGE-EMDGLYFITDWPTEIRPFYTMPDEDNPE 338
Query: 477 TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFG 536
+ D L+ + E+ G+QR +D++ RI+ GL E ++ YL+ +G H+G+G
Sbjct: 339 ISKSFD-LMYRDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWG 397
Query: 537 LGFERMILFATGIDNIRDVIPFPRYPGR 564
LG ER ++F G+ NIR+ + FPR R
Sbjct: 398 LGAERFVMFLLGLKNIREAVLFPRDRKR 425
Score = 52.5 bits (126), Expect = 3e-07
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDG----SCPANLQVIVDKDVADLGQLVPTGTCV 102
G++V GWV R+ G F L +G + PA V K++ + + + V
Sbjct: 12 GQEVTFMGWVHEIRDLGGLIFVLLRDREGLIQITAPAKK---VSKNLFKWAKKLNLESVV 68
Query: 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFR---PRT 159
V G++K E E+ K+ +V P+ T+ L R+ +R R
Sbjct: 69 AVRGIVKIK-EKAPGGFEIIPTKI-EVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRR 126
Query: 160 NTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT 208
T+ A+ RIR+ + + FL ++GF+ +HTP + S EG E+F +T
Sbjct: 127 PTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT 175
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 114 bits (287), Expect = 6e-27
Identities = 83/286 (29%), Positives = 136/286 (47%), Gaps = 38/286 (13%)
Query: 295 YTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ D+ + A L S QL + C V+ GP FRAE S T RHL EF ++ EM
Sbjct: 264 FRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEME 323
Query: 354 FSDLKDD-MNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFE----- 407
+ + ++ + + D L + C ++E + + Y PFE
Sbjct: 324 IKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQY--------------PFEPLKYL 369
Query: 408 ----RITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKP----VIVYN 459
R+T+ E +++L+ A E DL +E ER L ++ +K I++
Sbjct: 370 PKTLRLTFAEGIQMLKEAGVEVDPLG-------DLNTESERKLGQLVKEKYGTDFYILHR 422
Query: 460 YPKGIKAFY-MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPY 518
YP ++ FY M DD K + DV + + E+I G+QR ++++ R E+ G+ ++
Sbjct: 423 YPLAVRPFYTMPCPDDPKYSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGIDVKTI 481
Query: 519 EWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
Y+D R+G H GFG+G ER+++ G++NIR FPR P R
Sbjct: 482 STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQR 527
Score = 45.1 bits (107), Expect = 9e-05
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 49/198 (24%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL-----VPTG 99
LAG +V + G V T R GKG AFL + V V + G + +
Sbjct: 79 LAGSEVLIRGRVHTIR--GKGKSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRE 136
Query: 100 TCVYVEGMLKNPP---EGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRD----- 151
+ V VEG++ P +GT Q++E++V+K+ Y + K TL F +
Sbjct: 137 SVVDVEGVVSVPKKPVKGTTQQVEIQVRKI----------YCVSKALATLPFNVEDAARS 186
Query: 152 ---------------------RIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLY 187
R+ R RT A+ RI++ + FL +GF+
Sbjct: 187 ESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVE 246
Query: 188 IHTPIITTSDCEGAGEMF 205
IHTP + EG +F
Sbjct: 247 IHTPKLIAGASEGGSAVF 264
>gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Escherichia coli
asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis
thaliana and Saccharomyces cerevisiae mitochondrial (mt)
AsnRS. This domain is a beta-barrel domain (OB fold)
involved in binding the tRNA anticodon stem-loop. The
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Eukaryotes contain 2 sets of aaRSs, both of which are
encoded by the nuclear genome. One set concerns with
cytoplasmic protein synthesis, whereas the other
exclusively with mitochondrial protein synthesis. S.
cerevisiae mtAsnRS can charge E.coli tRNA with
asparagines. Mutations in the gene for S. cerevisiae
mtAsnRS has been found to induce a "petite" phenotype
typical for a mutation in a nuclear gene that results in
a non-functioning mitochondrial protein synthesis
system.
Length = 82
Score = 102 bits (257), Expect = 1e-26
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVYVEG 106
+V V GWV++ R+ K +F+E+NDGSC NLQV+VDK++ + TG+ + VEG
Sbjct: 1 EVTVNGWVRSVRDSKK--ISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEG 58
Query: 107 MLKNPPEGTKQKIELRVQKVVDVG 130
+L P G KQ EL+ +K+ +G
Sbjct: 59 VLVKSP-GAKQPFELQAEKIEVLG 81
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II
core domain. This domain is the core catalytic domain of
class II aminoacyl-tRNA synthetases of the subgroup
containing aspartyl, lysyl, and asparaginyl tRNA
synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. Nearly all class II tRNA synthetases
are dimers and enzymes in this subgroup are homodimers.
These enzymes attach a specific amino acid to the 3' OH
group of ribose of the appropriate tRNA.
Length = 269
Score = 108 bits (271), Expect = 2e-26
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 52/242 (21%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
V+ FR E +RH EF M++ EMAF+D +D + E V+ + +L
Sbjct: 72 VFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTY 130
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHE 443
F +++ PF R+TY EA+E
Sbjct: 131 GFELEDFGL------------PFPRLTYREALE--------------------------- 151
Query: 444 RYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPKVGELIGGSQREERYD 502
++ +P+ + +YP + + +D +A A D+ + V E+ GS R D
Sbjct: 152 ------RYGQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPD 204
Query: 503 VIKSRIEDMGL----PLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPF 558
+ ++ G+ +E +E+YL +G H G G+G +R+I+ T IR+VI F
Sbjct: 205 IQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAF 264
Query: 559 PR 560
P+
Sbjct: 265 PK 266
Score = 31.7 bits (72), Expect = 0.78
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 167 RIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
++R+ + A F+ +GFL + TP++ F V
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV 42
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional.
Length = 550
Score = 86.6 bits (214), Expect = 6e-18
Identities = 80/312 (25%), Positives = 142/312 (45%), Gaps = 42/312 (13%)
Query: 287 PQKDGKIDYTQDFFARQAFLTVSGQLQVE-TYACAVSNVYTFGPTFRAEHSHTSRHLAEF 345
P + G + ++F R A+L S QL + V V+ GP FR+E+S+T RHL EF
Sbjct: 244 PSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEF 303
Query: 346 WMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYD------KSCINRL 398
++ EM ++ + ++ AE+ ++ + L H +++ + + Y K R+
Sbjct: 304 VGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT-KELKAVCQQYPFEPLVWKLTPERM 362
Query: 399 RMVASTPFE---------------------RITYTEAVELLEVAVKEGKHFENKVEWGID 437
+ + RI Y +ELL ++E K+ D
Sbjct: 363 KELGVGVISEGVEPTDKYQARVHNMDSRMLRINYMHCIELLNTVLEE------KMAPTDD 416
Query: 438 LASEHERYLTE-VKFQKPV---IVYNYPKGIKAFY-MRLNDDLKTVAAMDVLVPKVGELI 492
+ + +E+ L + VK + I +P + FY M DD + + D+ + + E+
Sbjct: 417 INTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFI-RGEEIS 475
Query: 493 GGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNI 552
G+QR D++ +R + + + L P + Y+D R G H GFG+G ER+++ G+ N+
Sbjct: 476 SGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNV 535
Query: 553 RDVIPFPRYPGR 564
R FPR P R
Sbjct: 536 RLASLFPRDPQR 547
Score = 43.4 bits (102), Expect = 3e-04
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 34 SILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-- 91
++L++P+ L + V + V T R++GK AF+ + DGS V+ DV
Sbjct: 69 AVLSKPE----LVDKTVLIRARVSTTRKKGK--MAFMVLRDGSDSVQAMAAVEGDVPKEM 122
Query: 92 ---LGQLVPTGTCVYVEGML---KNPPEGTKQK-IELRVQKVVDVGMVDPAKYPIPKT-- 142
+GQ+ PT + V VE + + P T IEL+V+K+ V + +P T
Sbjct: 123 IDFIGQI-PTESIVDVEATVCKVEQPITSTSHSDIELKVKKI---HTVTESLRTLPFTLE 178
Query: 143 ----KLTLEFLRDRIPFRP-------RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTP 191
K + E + R RT A+ R+++ + FL F IH+P
Sbjct: 179 DASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSP 238
Query: 192 IITTSDCEGAGEMFQVTTLISDA 214
I + EG +F++ A
Sbjct: 239 KIINAPSEGGANVFKLEYFNRFA 261
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and
non-spirochete bacterial. This model represents the
lysyl-tRNA synthetases that are class II amino-acyl tRNA
synthetases. It includes all eukaryotic and most
bacterial examples of the enzyme, but not archaeal or
spirochete forms [Protein synthesis, tRNA
aminoacylation].
Length = 496
Score = 69.7 bits (171), Expect = 1e-12
Identities = 62/264 (23%), Positives = 97/264 (36%), Gaps = 44/264 (16%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
VY G FR E T H EF M+E A++D +D M+ E KF+ LL
Sbjct: 243 VYEIGRNFRNEGVDT-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELL------- 294
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHE 443
Y + I+ PF+RIT EA++ ++ E LA +
Sbjct: 295 GTTKITYGELEID-----FKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIG 349
Query: 444 -----------RYLTEVKFQK-------PVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLV 485
L E+ Q P + +YP I + N L
Sbjct: 350 IEVAEKSLTLGHILNELFEQFLEHTLIQPTFITHYPAEISPL-AKRNPSNPEFTDRFELF 408
Query: 486 PKVGELIGG--------SQREERYDVIKSRIEDMGLPLEPY--EWYLDLRRFGTVKHSGF 535
E+ QRE R++ + ++ G + E +++ +G G
Sbjct: 409 IAGKEIANAFSELNDPLDQRE-RFEQ-QVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGL 466
Query: 536 GLGFERMILFATGIDNIRDVIPFP 559
G+G +R+++ T +IRDVI FP
Sbjct: 467 GIGIDRLVMLLTDSKSIRDVILFP 490
Score = 28.9 bits (65), Expect = 7.5
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPT--------GT 100
+V + G + R GK +F L+ D S +Q+ V+KD DL + G
Sbjct: 55 EVSIAGRIMARRSMGKATFITLQ--DES--GQIQLYVNKD--DLPEDFYEFDEYLLDLGD 108
Query: 101 CVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKY---PIPKTKLTLEFLRDRIPFRP 157
+ V G G +Q + P K+ +T+ +L D I
Sbjct: 109 IIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYL-DLIVNPD 167
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPII 193
T ++I A+ FL +GF+ + TP++
Sbjct: 168 SRQTFLVRSKIIKAI----RRFLDDRGFIEVETPML 199
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon
recognition domain of class 2b aminoacyl-tRNA
synthetases (aaRSs). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. Class 2b aaRSs include the homodimeric
aspartyl-, asparaginyl-, and lysyl-tRNA synthetases
(AspRS, AsnRS, and LysRS). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
protein synthesis, whereas the other exclusively with
mitochondrial protein synthesis. Included in this group
are archeal and archeal-like AspRSs which are
non-discriminating and can charge both tRNAAsp and
tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS
and LysU) encoded by two distinct genes, which are
differentially regulated. The cytoplasmic and the
mitochondrial isoforms of human LysRS are encoded by a
single gene. Yeast cytoplasmic and mitochondrial LysRSs
participate in mitochondrial import of cytoplasmic
tRNAlysCUU. In addition to their housekeeping role,
human LysRS may function as a signaling molecule that
activates immune cells. Tomato LysRS may participate in
a process possibly connected to conditions of
oxidative-stress conditions or heavy metal uptake. It is
known that human tRNAlys and LysRS are specifically
packaged into HIV-1 suggesting a role for LysRS in tRNA
packaging. AsnRS is immunodominant antigen of the
filarial nematode Brugia malayai and is of interest as a
target for anti-parasitic drug design. Human AsnRS has
been shown to be a pro-inflammatory chemokine which
interacts with CCR3 chemokine receptors on T cells,
immature dendritic cells and macrophages.
Length = 85
Score = 59.1 bits (144), Expect = 4e-11
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYV 104
+V + GWV + R+ G F+++ DGS +QV+V+K+ + + + T + V V
Sbjct: 1 EVTLAGWVHSRRDHGG--LIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGV 56
Query: 105 EGMLKNPPEGT--KQKIELRVQKV 126
G + PEG +IEL+ +++
Sbjct: 57 TGTVVKRPEGNLATGEIELQAEEL 80
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core
domain. Class II assignment is based upon its structure
and the presence of three characteristic sequence
motifs. AspRS is a homodimer, which attaches a specific
amino acid to the 3' OH group of ribose of the
appropriate tRNA. The catalytic core domain is primarily
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. AspRS in this family
differ from those found in the AsxRS family by a GAD
insert in the core domain.
Length = 280
Score = 61.8 bits (151), Expect = 2e-10
Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 53/240 (22%)
Query: 331 FRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNY 390
FR E R EF ++ EM+F D +D M+ E LL + F E +
Sbjct: 79 FRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEG--------LLKYVFK--EVLGVE- 126
Query: 391 DKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGID-----LASEHERY 445
+TPF R+TY EA+E + K W +D E R
Sbjct: 127 -----------LTTPFPRMTYAEAMER----------YGFKFLWIVDFPLFEWDEEEGRL 165
Query: 446 L-TEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPKVGELIGGSQREERYDV 503
+ F P + + D A A D+++ V EL GGS R D+
Sbjct: 166 VSAHHPFTAPK-----EEDLDLLE---KDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDI 216
Query: 504 IKSRIEDMGL-PLEPYE---WYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
+ E +GL E E + L+ ++G H G LG +R+++ TG ++IRDVI FP
Sbjct: 217 QEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFP 276
Score = 39.1 bits (92), Expect = 0.004
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 167 RIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
R+R+ + A FL +QGF+ I TPI+T S EGA
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGA 36
>gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain. This
family contains OB-fold domains that bind to nucleic
acids. The family includes the anti-codon binding domain
of lysyl, aspartyl, and asparaginyl -tRNA synthetases
(See pfam00152). Aminoacyl-tRNA synthetases catalyze the
addition of an amino acid to the appropriate tRNA
molecule EC:6.1.1.-. This family also includes part of
RecG helicase involved in DNA repair. Replication factor
A is a heterotrimeric complex, that contains a subunit
in this family. This domain is also found at the
C-terminus of bacterial DNA polymerase III alpha chain.
Length = 75
Score = 50.7 bits (122), Expect = 3e-08
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGML 108
V V G V T + G AFL + DG+ ++QV++ K+ A+ L + + G V V G +
Sbjct: 1 VTVAGRV-TSVRRSGGKVAFLTLRDGT--GSIQVVLFKEEAEKLAKKLKEGDVVLVTGKV 57
Query: 109 KNPPEGTKQKIELRVQKVVDV 129
K P G ++EL V+++ +
Sbjct: 58 KKRPGG---ELELVVEEIEVL 75
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type.
Asparate--tRNA ligases in this family may be
discriminating (6.1.1.12) or nondiscriminating
(6.1.1.23). In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_bact, represents
aspartyl-tRNA synthetases from the Bacteria and from
mitochondria. In some species, this enzyme aminoacylates
tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently
transamidated to Asn-tRNA(asn). This model generates
very low scores for the archaeal type of aspS and for
asnS; scores between the trusted and noise cutoffs
represent fragmentary sequences [Protein synthesis, tRNA
aminoacylation].
Length = 583
Score = 55.5 bits (134), Expect = 4e-08
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 490 ELIGGSQREERYDVIKSRIEDMGL-PLEPYEWY---LDLRRFGTVKHSGFGLGFERMILF 545
EL GGS R +V K E +G+ P E E + L+ ++GT H+GF LG +R+++
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 546 ATGIDNIRDVIPFPR 560
TG DNIRDVI FP+
Sbjct: 538 LTGTDNIRDVIAFPK 552
Score = 41.6 bits (98), Expect = 0.001
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYV 104
G+ V + GWV R+ G F L G +QV+ D D L + V V
Sbjct: 15 GQTVTLAGWVNRRRDLGGLIFIDLRDRSGI----VQVVCDPDADALKLAKGLRNEDVVQV 70
Query: 105 EGMLKNPPEGTKQ------KIELRVQ--KVVDVGMVDPAKYPIPKTKLTLEFLRDRIPF- 155
+G + PEG +IE+ + +++ P I + E +R + +
Sbjct: 71 KGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPP---LIIEKTDAEEEVRLKYRYL 127
Query: 156 ---RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
RP + ++R+ + A FL +QGFL I TP++T S EGA
Sbjct: 128 DLRRPE---MQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGA 173
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 585
Score = 55.3 bits (134), Expect = 5e-08
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 490 ELIGGSQREERYDVIKSRIEDMGL-PLEPYE---WYLDLRRFGTVKHSGFGLGFERMILF 545
EL GGS R ++ + E +G+ P E E + L+ ++G H G G +R+++
Sbjct: 481 ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVML 540
Query: 546 ATGIDNIRDVIPFPRYPGRADL 567
TG ++IRDVI FP+ ADL
Sbjct: 541 LTGAESIRDVIAFPKTQQAADL 562
Score = 46.0 bits (110), Expect = 4e-05
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVD----KDVADLGQLVPTGTCV 102
G+ V + GWV R+ G F+++ D +QV+ D + ++ + +
Sbjct: 15 GQTVTLSGWVHRRRDHGG--LIFIDLRDRE--GIVQVVFDPEDSPEAFEVASRLRNEFVI 70
Query: 103 YVEGMLKNPPEGTKQ------KIELRVQKVVDVGMVDPAKYPIPK-------TKLTLEFL 149
V G ++ PEGT +IE+ +++ + + I +L +L
Sbjct: 71 QVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRYL 130
Query: 150 RDRIPFRPR-TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
R RP + ++R+ + A FL QGFL I TPI+T S EGA
Sbjct: 131 DLR---RPEMQKNL----KLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 502
Score = 53.4 bits (129), Expect = 2e-07
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 35/161 (21%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
V+ G FR E T H EF M+E A++D +D M+ E +K + + +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGT--TKV 307
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV---------------ELLEVAVKEGKHF 428
+ + D S PF+RIT +A+ E E+A K G
Sbjct: 308 TYGGQEID----------FSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEV 357
Query: 429 ENKVEWG----IDLASEHERYLTEVKFQKPVIVYNYPKGIK 465
E WG ++ E L E K +P V ++P I
Sbjct: 358 EKYGTWGLGHLLNELFEE---LVEAKLIQPTFVTDHPVEIS 395
Score = 39.5 bits (93), Expect = 0.004
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 534 GFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +R+++ T +IRDVI FP
Sbjct: 471 GLGIGIDRLVMLLTNSPSIRDVILFP 496
Score = 33.3 bits (77), Expect = 0.32
Identities = 44/178 (24%), Positives = 64/178 (35%), Gaps = 62/178 (34%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV------ADLGQLVPTG 99
+V V G + T R GK SFA L+ G +Q+ V+KD L + + G
Sbjct: 60 LNIEVSVAGRIMTIRNMGKASFADLQDGSG----KIQLYVNKDEVGEEVFEALFKKLDLG 115
Query: 100 TCVYVEGMLKNPPEG------------TK------------QKIELRV-QKVVDVGMVDP 134
+ VEG L G +K E+R Q+ +D+ +V+P
Sbjct: 116 DIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQRYLDL-IVNP 174
Query: 135 AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPI 192
R F R+ I A IR FL +GFL + TP+
Sbjct: 175 E---------------SRQTFIKRSKIIRA---IRE--------FLDDRGFLEVETPM 206
>gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called
WHEP-TRS has been shown.to exist in a number of higher
eukaryote aminoacyl-transfer RNA synthetases. This
domain is present one to six times in the several
enzymes. There are three copies in mammalian
multifunctional aminoacyl-tRNA synthetase in a region
that separates the N-terminal glutamyl-tRNA synthetase
domain from the C-terminal prolyl-tRNA synthetase
domain, and six copies in the intercatalytic region of
the Drosophila enzyme. The domain is found at the
N-terminal extremity of the mammalian tryptophanyl- tRNA
synthetase and histidyl-tRNA synthetase, and the
mammalian, insect, nematode and plant glycyl- tRNA
synthetases. This domain could contain a central
alpha-helical region and may play a role in the
association of tRNA-synthetases into multienzyme
complexes.
Length = 56
Score = 44.3 bits (105), Expect = 3e-06
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGK 292
+ +GE V KLK++KA ++ I A+V +L K L + + KPG P D
Sbjct: 4 VAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQD-YKPGAPPGDTP 56
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated.
Length = 588
Score = 47.8 bits (115), Expect = 1e-05
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 490 ELIGGSQREERYDVIKSRI-EDMGLPLEPYE----WYLDLRRFGTVKHSGFGLGFERMIL 544
EL GGS R R + I+ ++ E +G+ E E + LD ++G H G G +R+++
Sbjct: 483 ELGGGSIRIHRPE-IQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVM 541
Query: 545 FATGIDNIRDVIPFP 559
G D+IRDVI FP
Sbjct: 542 LLAGADSIRDVIAFP 556
Score = 44.7 bits (107), Expect = 1e-04
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 27/173 (15%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG--TCV 102
G+ V + GWV R+ G F+++ D +QV+ D D +
Sbjct: 15 HVGQTVTLCGWVHRRRDHGG--LIFIDLRDRE--GIVQVVFDPDAEAFEVAESLRSEYVI 70
Query: 103 YVEGMLKNPPEGTKQK------IELRVQKVVDVGMVDPAKYPIPKTKLTLEFLR------ 150
V G ++ PEGT IE+ ++ + +PI + E LR
Sbjct: 71 QVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLKYRYL 130
Query: 151 D-RIPFRPR-TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
D R RP + ++R+ + A FL GFL I TPI+T S EGA
Sbjct: 131 DLR---RPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
>gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal,
anticodon recognition domain of the type found in human
and Saccharomyces cerevisiae cytoplasmic
asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai
AsnRs and, in various putative bacterial AsnRSs. This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. The enzymes in
this group are homodimeric class2b aminoacyl-tRNA
synthetases (aaRSs). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
synthesis, whereas the other exclusively with
mitochondrial protein synthesis. AsnRS is
immunodominant antigen of the filarial nematode B.
malayai and of interest as a target for anti-parasitic
drug design. Human AsnRS has been shown to be a
pro-inflammatory chemokine which interacts with CCR3
chemokine receptors on T cells, immature dendritic cells
and macrophages.
Length = 84
Score = 42.6 bits (101), Expect = 2e-05
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEG 106
V+V GWV R Q K FL + DG+ LQ ++ K + + + + V V G
Sbjct: 2 VKVFGWVHRLRSQKK--LMFLVLRDGT--GFLQCVLSKKLVTEFYDAKSLTQESSVEVTG 57
Query: 107 MLKNPPEGTKQKI--ELRVQ 124
+K P + EL+V
Sbjct: 58 EVKEDPRAKQAPGGYELQVD 77
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA
synthetase (class II) [Translation, ribosomal structure
and biogenesis].
Length = 322
Score = 45.4 bits (108), Expect = 5e-05
Identities = 54/224 (24%), Positives = 83/224 (37%), Gaps = 52/224 (23%)
Query: 371 MCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAST-PFERITYTEAV-------------- 415
M +W C D + D L++V ER++Y EA
Sbjct: 114 MLEWYRVGC--DYYRLMNEVDD----LLQLVLECVEAERLSYQEAFLRYLGIDPLSADKT 167
Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEV-----KFQKPVIVYNYPKGIKAFYMR 470
EL E A K G +W L + E ++P +Y++P A +
Sbjct: 168 ELREAAAKLGLSAATDEDWD-TL---LQLLFVEGVEPNLGKERPTFLYHFPASQAAL-AQ 222
Query: 471 LNDDLKTVAAMDVLVPKVGELIGG----------SQREERYDVIKSRIEDMGLPLEPYEW 520
++ VA L K EL G +R E+ + ++R GLP P
Sbjct: 223 ISTGDPRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERAR---RGLPQYP--- 276
Query: 521 YLDLRRFGTVKH----SGFGLGFERMILFATGIDNIRDVIPFPR 560
+D + SG LGF+R+++ A G ++I DVI FP
Sbjct: 277 -IDEDFLAALARMPPCSGVALGFDRLVMLALGAESIDDVIAFPV 319
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 45.8 bits (108), Expect = 5e-05
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 51/266 (19%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLL------- 376
V+ FR E + RH EF M+E MA++D D + E+ + + +L
Sbjct: 255 VFEINRNFRNE-GISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 313
Query: 377 -DHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLE--------------VA 421
+H FD PFE++T EA++ A
Sbjct: 314 GEHVFD--------------------FGKPFEKLTMREAIKKYRPETDMADLDNFDAAKA 353
Query: 422 VKEGKHFENKVEWGID-LASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAA 480
+ E + WG+ + +E + E +P + YP + R + + +
Sbjct: 354 LAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDR 413
Query: 481 MDVLV--PKVG----ELIGGSQREERY-DVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHS 533
+ + ++G EL + ER+ + + ++ + E Y+ +G +
Sbjct: 414 FEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTA 473
Query: 534 GFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +RMI+ T IRDVI FP
Sbjct: 474 GLGIGIDRMIMLFTNSHTIRDVILFP 499
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase.
Length = 652
Score = 45.9 bits (109), Expect = 5e-05
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 473 DDLKTVAAMDV-LVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYE----WYLDLRRF 527
DL + A+ +V E+ GGS R R DV + +E +GL E E + L+
Sbjct: 528 GDLSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDM 587
Query: 528 GTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
G H G G +R+++ G +IRDVI FP+
Sbjct: 588 GAPPHGGIAYGLDRLVMLLAGAKSIRDVIAFPK 620
Score = 42.1 bits (99), Expect = 6e-04
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVD----KDVADLGQLVPTGTCV 102
G +V + GWV R+ G FL+V D + +QV+ + + V
Sbjct: 72 GSRVTLCGWVDLHRDMG--GLTFLDVRDHT--GIVQVVTLPDEFPEAHRTANRLRNEYVV 127
Query: 103 YVEGMLKNPPEGTKQK------IELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRD----- 151
VEG +++ P+ + K +E+ + V D+ V P T T + +D
Sbjct: 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESV-DILNVVTKSLPFLVT--TADEQKDSIKEE 184
Query: 152 -RIPFR---PRTNTIAAVARIRNALAYATHTFLQ-KQGFLYIHTPIITTSDCEGA 201
R+ +R R + A R+R+ + +L+ GF+ I TPI++ S EGA
Sbjct: 185 VRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGA 239
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
domain. Class II LysRS is a dimer which attaches a
lysine to the 3' OH group of ribose of the appropriate
tRNA. Its assignment to class II aaRS is based upon its
structure and the presence of three characteristic
sequence motifs in the core domain. It is found in
eukaryotes as well as some prokaryotes and archaea.
However, LysRS belongs to class I aaRS's in some
prokaryotes and archaea. The catalytic core domain is
primarily responsible for the ATP-dependent formation of
the enzyme bound aminoacyl-adenylate.
Length = 329
Score = 43.0 bits (102), Expect = 3e-04
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 32/159 (20%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
VY G FR E H EF M+E A++D D M+ E +
Sbjct: 79 VYEIGRNFRNE-GIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLV----KKINGKT 133
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV-----------------ELLEVAVKE-G 425
+ Y ++ + PF+R+T +A+ EL ++ K
Sbjct: 134 KIE---YGGKELD-----FTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIK 185
Query: 426 KHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGI 464
+ E G L E ++ E +P + ++P I
Sbjct: 186 EKIEKPRTLGKLLDKLFEEFV-EPTLIQPTFIIDHPVEI 223
Score = 41.4 bits (98), Expect = 7e-04
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +R+++ T ++IRDVI FP
Sbjct: 299 GGLGIGIDRLVMLLTDSNSIRDVILFP 325
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
Length = 491
Score = 42.4 bits (101), Expect = 6e-04
Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 32/155 (20%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
VY G FR E T RH EF M+E A++D D M+ E ++ +
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLA----QAVLGTT 297
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV--------------ELLEVAVKEGKHFE 429
+ Y + I+ PF+R+T +A+ E +A + G E
Sbjct: 298 KV---TYQGTEID-----FGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVE 349
Query: 430 NKVEWG--IDLASEHERYLTEVKFQKPVIVYNYPK 462
G I+ E E K +P + +YP
Sbjct: 350 KSWGLGKLINELFEE---FVEPKLIQPTFITDYPV 381
Score = 36.6 bits (86), Expect = 0.035
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +R+++ T +IRDVI FP
Sbjct: 459 GGLGIGIDRLVMLLTDSPSIRDVILFP 485
Score = 33.1 bits (77), Expect = 0.40
Identities = 50/179 (27%), Positives = 68/179 (37%), Gaps = 65/179 (36%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----------ADL-- 92
+V V G V R GK SFA L+ DGS +Q+ V KD DL
Sbjct: 53 LEIEVSVAGRVMLKRVMGKASFATLQ--DGS--GRIQLYVSKDDVGEEALEAFKKLDLGD 108
Query: 93 -----GQLVPTGT---CVYVEGM------LKNPPEGTK----QKIELRV-QKVVDVGMVD 133
G L T T V + L+ P+ K +E R Q+ VD+ +V+
Sbjct: 109 IIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPD--KFHGLTDVETRYRQRYVDL-IVN 165
Query: 134 PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPI 192
P R+ FR R+ I+A IR FL +GFL + TP+
Sbjct: 166 PE-------------SRET--FRKRSKIISA---IRR--------FLDNRGFLEVETPM 198
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative
bacteria have a protein closely homologous to the
C-terminal region of lysyl-tRNA synthetase (LysS).
Multiple sequence alignment of these proteins with the
homologous regions of collected LysS proteins shows that
these proteins form a distinct set rather than just
similar truncations of LysS. The protein is termed GenX
after its designation in E. coli. Interestingly, genX
often is located near a homolog of
lysine-2,3-aminomutase. Its function is unknown [Unknown
function, General].
Length = 290
Score = 41.0 bits (97), Expect = 0.001
Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 70/266 (26%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVE---PEMAFSDLKDDMNCAEAYVKFMCDWLLDHCF 380
++ FR RH EF M+E P + DL D+ + LL
Sbjct: 63 IFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDE-----------VEALLQELL 110
Query: 381 DDMEFMAKNYDKSCINRLRMVASTPFERITYTEA------VELLEVAVKEGKHFENKVEW 434
D P ER++Y EA ++ L ++ E +
Sbjct: 111 GD-------------------PFAPAERLSYQEAFLRYAGIDPLTASLAELQ--AAAAAH 149
Query: 435 GIDLASEHER--YLTEV---------KFQKPVIVYNYPKGIKAFYMRLNDDLKTVAA-MD 482
GI + E +R L + F +P +Y+YP +A R++ D VA +
Sbjct: 150 GIRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYP-ASQAALARISPDDPRVAERFE 208
Query: 483 VLVPKV------GELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKH---- 532
+ + + EL +++ R++ + + +GLP P LD R ++
Sbjct: 209 LYIKGLELANGFHELTDAAEQRRRFEADNALRKALGLPRYP----LDERFLAALEAGLPE 264
Query: 533 -SGFGLGFERMILFATGIDNIRDVIP 557
SG LG +R+++ A G D+I DV+
Sbjct: 265 CSGVALGVDRLLMLALGADSIDDVLA 290
>gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain.
Length = 56
Score = 36.5 bits (85), Expect = 0.001
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQK 289
I +G+ V KLK+ KA +E + A+V +L K+ + + KPG P
Sbjct: 5 IAAQGDLVRKLKAKKAPKEDVDAAVKKLLALKKQYKEKTGKD-YKPGCPAD 54
>gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain. This short
RNA-binding domain is found in several higher eukaryote
aminoacyl-tRNA synthetases (aaRSs). It is found in three
copies in the mammalian bifunctional EPRS in a region
that separates the N-terminal GluRS from the C-terminal
ProRS. In the Drosophila EPRS, this domain is repeated
six times. It is found at the N-terminus of TrpRS, HisRS
and GlyR and at the C-terminus of MetRS. This domain
consists of a helix- turn- helix structure, which is
similar to other RNA-binding proteins. It is involved in
both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for
the formation of aaRSs into multienzyme complexes.
Length = 42
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLE 277
I E+G+ V KLK++KA +E I A+V +L K +
Sbjct: 4 IAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKEAT 42
>gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Pyrococcus
horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS).
This domain is a beta-barrel domain (OB fold) involved
in binding the tRNA anticodon stem-loop. The archeal
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Length = 103
Score = 37.9 bits (88), Expect = 0.002
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTG--TCVYV 104
+V + GWV RE GK +F L + G +Q + KD+ + + G + V V
Sbjct: 1 KVTLAGWVYRKREVGKKAFIVLRDSTGI----VQAVFSKDLNEEAYREAKKVGIESSVIV 56
Query: 105 EGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRD 151
EG +K P E+ +K+ + V+ +PI + + EFL D
Sbjct: 57 EGAVKADPRAPGGA-EVHGEKLEIIQNVEF--FPITEDA-SDEFLLD 99
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 39.6 bits (92), Expect = 0.004
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 33/181 (18%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVI-----VDKDVADLGQLVPTGTC 101
GR+V + GWV R+ G+ F L +G +Q + DV +L + C
Sbjct: 18 GREVCLAGWVDAFRDHGELLFIHLRDRNGF----IQAVFSPEAAPADVYELAASLRAEFC 73
Query: 102 VYVEGMLKNPPEGTKQ------KIELRVQKVVDVGMVDPAKYPIPKTKLTL--------- 146
V ++G ++ E T+ IE+ V+++ + + + I +T
Sbjct: 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADA 133
Query: 147 --EFLRDRIPF----RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEG 200
E LR + + RP A R+ + FL +GFL I TPI+T S EG
Sbjct: 134 VNEDLRLQYRYLDIRRPAMQDHLA---KRHRIIKCARDFLDSRGFLEIETPILTKSTPEG 190
Query: 201 A 201
A
Sbjct: 191 A 191
Score = 35.7 bits (82), Expect = 0.066
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 490 ELIGGSQREERYDVIKSRIEDMGLPLEPYE----WYLDLRRFGTVKHSGFGLGFERMILF 545
EL GGS R D+ +GL E E ++L F H G LG +R++
Sbjct: 499 ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSM 558
Query: 546 ATGIDNIRDVIPFPR 560
+IR+VI FP+
Sbjct: 559 ILQTPSIREVIAFPK 573
>gnl|CDD|238474 cd00938, HisRS_RNA, HisRS_RNA binding domain. This short
RNA-binding domain is found at the N-terminus of HisRS
in several higher eukaryote aminoacyl-tRNA synthetases
(aaRSs). This domain consists of a helix- turn- helix
structure, which is similar to other RNA-binding
proteins. It is involved in both protein-RNA
interactions by binding tRNA and protein-protein
interactions, which are important for the formation of
aaRSs into multienzyme complexes.
Length = 45
Score = 34.0 bits (78), Expect = 0.010
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENL 273
+K +GE V KLK++KA +E I+ V +L + K L
Sbjct: 7 VKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQL 41
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional.
Length = 306
Score = 36.4 bits (85), Expect = 0.031
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 34/182 (18%)
Query: 403 STPFERITYTEAV--------------ELLEVAVKEGKHFENKVEWGIDLASEHERYLTE 448
P E ++Y +A +L EVA K G E D + +
Sbjct: 130 CEPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQL-LFTFG 188
Query: 449 VK----FQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDV------LVPKVGELIGGSQRE 498
V+ +KP VY++P A +D + +V L EL ++
Sbjct: 189 VEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAERFEVYFKGIELANGFHELTDAREQR 248
Query: 499 ERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKH-----SGFGLGFERMILFATGIDNIR 553
+R++ + GLP +P +D ++ SG LG +R+I+ A G ++I
Sbjct: 249 QRFEQDNRKRAARGLPQQP----IDENLIAALEAGLPDCSGVALGVDRLIMLALGAESIS 304
Query: 554 DV 555
+V
Sbjct: 305 EV 306
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 35.9 bits (83), Expect = 0.032
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 324 VYTFGPTFRAEHSHTS-RHLAEFWMVEPEMAFSD 356
+ GP FR E R + EF +E E+ D
Sbjct: 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGED 111
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 35.7 bits (83), Expect = 0.072
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
G+GLG +R+++ T +IRDVI FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
Score = 34.6 bits (80), Expect = 0.17
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMC 372
VY G FR E T RH EF E A++D D M E V M
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMV 347
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 34.9 bits (81), Expect = 0.11
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 534 GFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +R+++ TG +IR+ +PFP
Sbjct: 1064 GLGMGVDRLVMLLTG-RSIRETLPFP 1088
Score = 33.8 bits (78), Expect = 0.29
Identities = 46/169 (27%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 37 TRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD------VA 90
T + G +V V G V R+ G FA L D S LQV++D +A
Sbjct: 641 TVAEALDAPTGEEVSVSGRVLRIRDYGGVLFADLR--DWS--GELQVLLDASRLEQGSLA 696
Query: 91 DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLR 150
D V G V V G + GT + L + V + P+P L
Sbjct: 697 DFRAAVDLGDLVEVTGTM-----GTSRNGTLSLL-VTSWRLAGKCLRPLPDKWKGLTDPE 750
Query: 151 DRIPFR---PRTNTIA-AVARIRNALAYATHTFLQKQGFLYIHTPIITT 195
R+ R N A + R R+A+ A L +GFL + TPI+
Sbjct: 751 ARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQ 799
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 34.2 bits (78), Expect = 0.21
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 509 EDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
++ +PL+ E +L + G +G+G+G +R ++ T NIRD I FP
Sbjct: 512 DEEAMPLD--ETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
>gnl|CDD|238473 cd00936, WEPRS_RNA, WEPRS_RNA binding domain. This short
RNA-binding domain is found in several higher eukaryote
aminoacyl-tRNA synthetases (aaRSs). It is found in
multiple copies in eukaryotic bifunctional
glutamyl-prolyl-tRNA synthetases (EPRS) in a region that
separates the N-terminal glutamyl-tRNA synthetase
(GluRS) from the C-terminal prolyl-tRNA synthetase
(ProRS). It is also found at the N-terminus of
vertebrate tryptophanyl-tRNA synthetases (TrpRS). This
domain consists of a helix-turn-helix structure, which
is similar to other RNA-binding proteins. It is involved
in both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for
the formation of aaRSs into multienzyme complexes.
Length = 50
Score = 30.3 bits (69), Expect = 0.27
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTEL 266
I +G+ V +LK+ KA +E I A+V +L
Sbjct: 5 IAAQGDLVRELKAKKAPKEEIDAAVKKL 32
>gnl|CDD|238472 cd00935, GlyRS_RNA, GlyRS_RNA binding domain. This short
RNA-binding domain is found at the N-terminus of GlyRS
in several higher eukaryote aminoacyl-tRNA synthetases
(aaRSs). This domain consists of a helix-turn-helix
structure , which is similar to other RNA-binding
proteins. It is involved in both protein-RNA
interactions by binding tRNA and protein-protein
interactions, which are important for the formation of
aaRSs into multienzyme complexes.
Length = 51
Score = 29.4 bits (66), Expect = 0.45
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 232 IEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLE 277
+ + +KE+G+ V KLK + A I +V EL K+ L E
Sbjct: 1 LAPLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLEDKE 46
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 245
Score = 32.2 bits (74), Expect = 0.54
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 534 GFGLGFERMILFATGIDNIRD 554
FGLG ER+ + GID+IRD
Sbjct: 213 AFGLGVERLAMLKYGIDDIRD 233
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 32.7 bits (74), Expect = 0.64
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
+G G GLG +R+ +F T + I+DVI FP
Sbjct: 547 YGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
>gnl|CDD|238475 cd00939, MetRS_RNA, MetRS_RNA binding domain. This short
RNA-binding domain is found at the C-terminus of MetRS
in several higher eukaryote aminoacyl-tRNA synthetases
(aaRSs). It is repeated in Drosophila MetRS. This domain
consists of a helix-turn-helix structure, which is
similar to other RNA-binding proteins. It is involved in
both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for
the formation of aaRSs into multienzyme complexes.
Length = 45
Score = 29.0 bits (65), Expect = 0.72
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLE 277
+ E+G V KLK+ KA + V +L K+ LA E
Sbjct: 5 VAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAE 43
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
alpha chain catalytic core domain. PheRS belongs to
class II aminoacyl-tRNA synthetases (aaRS) based upon
its structure and the presence of three characteristic
sequence motifs. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. While class II aaRSs generally
aminoacylate the 3'-OH ribose of the appropriate tRNA,
PheRS is an exception in that it attaches the amino acid
at the 2'-OH group, like class I aaRSs. PheRS is an
alpha-2/ beta-2 tetramer.
Length = 218
Score = 31.4 bits (72), Expect = 0.97
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 535 FGLGFERMILFATGIDNIRD 554
FG+G ER+ + GI +IR
Sbjct: 192 FGIGLERLAMLKYGIPDIRL 211
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 31.7 bits (73), Expect = 1.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 535 FGLGFERMILFATGIDNIRDV 555
+GLG ER+ + G+D+IRD+
Sbjct: 457 WGLGIERLAMLRLGLDDIRDL 477
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 31.4 bits (72), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 535 FGLGFERMILFATGIDNIRD 554
FGLG ER+ + GI +IRD
Sbjct: 305 FGLGLERLAMLKYGIPDIRD 324
>gnl|CDD|215458 PLN02853, PLN02853, Probable phenylalanyl-tRNA synthetase alpha
chain.
Length = 492
Score = 31.2 bits (71), Expect = 1.6
Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 4/21 (19%)
Query: 536 GLGFER--MILFATGIDNIRD 554
GL ER MIL+ GIDNIRD
Sbjct: 453 GLSLERPTMILY--GIDNIRD 471
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 31.1 bits (70), Expect = 1.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 229 EADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAK 275
EA +A K+K EA AK ++KA EA + + E K
Sbjct: 182 EAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
>gnl|CDD|145182 pfam01880, Desulfoferrodox, Desulfoferrodoxin. Desulfoferrodoxins
contains two types of iron: an Fe-S4 site very similar
to that found in desulforedoxin from Desulfovibrio gigas
and an octahedral coordinated high-spin ferrous site
most probably with nitrogen/oxygen-containing ligands.
Due to this rather unusual combination of active
centres, this novel protein is named desulfoferrodoxin.
Length = 96
Score = 28.4 bits (64), Expect = 2.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 189 HTPIITTSDCEGAGEMFQVT 208
H P+I D AGE F+V
Sbjct: 9 HVPVIECPDKVKAGEPFEVK 28
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 30.4 bits (69), Expect = 2.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 534 GFGLGFERMILFATGIDNIRD 554
+G+G ER+ + GI +IRD
Sbjct: 260 AWGIGIERLAMLKYGITDIRD 280
>gnl|CDD|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 145
Score = 29.3 bits (65), Expect = 3.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 206 QVTTLISDADKLE--------------KELIKNPPPSEADIEAAKLVIKEKGEAVAKLKS 251
+VT ++ D ++ E KE++KNP S+ DIEAA +KE + L S
Sbjct: 76 RVTIMVDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKALNS 135
Query: 252 DKA 254
Sbjct: 136 SNG 138
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 30.1 bits (68), Expect = 4.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 232 IEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEER 279
+ + + +G AV LK+ KA + I A++ +L K + LE+
Sbjct: 9 LAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKE 56
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 29.5 bits (67), Expect = 6.1
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 423 KEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA--- 479
E + + + W A+ ++Y + + P AF + + K++A
Sbjct: 299 VEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRK 358
Query: 480 ----AMDVLVPKVGELIGGS 495
A++ L K+ ELIGGS
Sbjct: 359 ASGKALNALAKKLPELIGGS 378
>gnl|CDD|225211 COG2332, CcmE, Cytochrome c-type biogenesis protein CcmE
[Posttranslational modification, protein turnover,
chaperones].
Length = 153
Score = 28.1 bits (63), Expect = 7.4
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 34 SILTRPDGGAGLAGRQVRVGGWVKTG---REQGKGSFAFLEVNDGSCPANLQVIVDKDVA 90
S L G +++R+GG V+ G R+ G +F V DG+ ++ V + +
Sbjct: 41 SELLEGKVETG---QRLRLGGLVEAGSVQRDPGSLKVSF-VVTDGN--KSVTVSYEGILP 94
Query: 91 DL---GQLVPTGTCVYVEGMLKNPP 112
DL GQ V EG L+
Sbjct: 95 DLFREGQ------GVVAEGQLQGGG 113
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Validated.
Length = 339
Score = 28.5 bits (65), Expect = 8.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 531 KHSG--FGLGFERMILFATGIDNIRD 554
++SG FG+G ER+ + GID+IR
Sbjct: 302 EYSGFAFGMGIERLAMLKYGIDDIRL 327
>gnl|CDD|197854 smart00745, MIT, Microtubule Interacting and Trafficking molecule
domain.
Length = 77
Score = 26.5 bits (59), Expect = 9.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 248 KLKSDKAGREAISASVTE-LTKAKENLAKLEERSK 281
K++SD REA+ A E L +A+E L ER
Sbjct: 43 KVESDSKRREALKAKAAEYLDRAEEIKKSLLERLA 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,516,105
Number of extensions: 2968024
Number of successful extensions: 2905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2827
Number of HSP's successfully gapped: 110
Length of query: 567
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 465
Effective length of database: 6,413,494
Effective search space: 2982274710
Effective search space used: 2982274710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)