RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008405
(567 letters)
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 448 bits (1155), Expect = e-154
Identities = 83/270 (30%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F A+LT S QL +E+ ++ + ++RAE S T RHLAE+ +E E+ F
Sbjct: 198 QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISF 257
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
+D +N E V + D ++ D + M + + + PF+R+TY +A++
Sbjct: 258 EDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKY 308
Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLK 476
+ + E+G D++ + ER +T+ + P+ + ++P +KAFYM ++
Sbjct: 309 CND--HGILNKDKPFEYGEDISEKPERQMTD-EIGCPIFMIHFPSKMKAFYMSKVPGHPD 365
Query: 477 TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFG 536
++D+L+P VGE++GGS R YD + + GL +PY WY R++G+ H G+G
Sbjct: 366 LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYG 425
Query: 537 LGFERMILFATGIDNIRDVIPFPRYPGRAD 566
LG ER++++ G D+IR V +PRY R +
Sbjct: 426 LGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
Score = 177 bits (450), Expect = 1e-49
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 13/176 (7%)
Query: 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPT 98
AGL G+ V GW R+ K F+E+ DGS Q ++ + +L+
Sbjct: 25 AAGLEGKLVTFKGWAYHIRKARKT-LIFVELRDGSG--YCQCVIFGKELCEPEKVKLLTR 81
Query: 99 GTCVYVEGMLKNPPEG-------TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRD 151
+ + G L +E++V + +G I ++
Sbjct: 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQ 141
Query: 152 RIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
R+ V ++R+ + + + F I P I + CEG +F++
Sbjct: 142 NRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL 197
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 443 bits (1142), Expect = e-152
Identities = 99/268 (36%), Positives = 149/268 (55%), Gaps = 10/268 (3%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE E F L
Sbjct: 174 DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITL 233
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
D M E V D LL + + + ++ IN PF R+ Y +A++
Sbjct: 234 DDLMEKIEELVCDTVDRLLADE--EAKKLLEH-----INPKFQPPERPFLRMEYKDAIKW 286
Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLK 476
L+ E + F N +G D+A ER++T+ KP+++ +P IKAFYM R D
Sbjct: 287 LQEHNVENE-FGNTFTYGEDIAEAAERFMTD-TINKPILLNRFPSEIKAFYMQRDAQDNT 344
Query: 477 TVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFG 536
++D+L+P VGE++GGS R ++D + +++ + +PY WYLD R +GT H G+G
Sbjct: 345 LTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYG 404
Query: 537 LGFERMILFATGIDNIRDVIPFPRYPGR 564
LG ER I + T ++IRDV +PR+ GR
Sbjct: 405 LGLERFICWLTNTNHIRDVCLYPRFVGR 432
Score = 180 bits (460), Expect = 3e-51
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 8/166 (4%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYV 104
+V + GW+ R QGK F + DG+ LQV++ + V T V +
Sbjct: 11 NERVCIKGWIHRMRRQGKS-LMFFILRDGTG--FLQVLLMDKLCQTYDALTVNTECTVEI 67
Query: 105 EGMLKNPPEGTK--QKIELRVQKVVDVGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNT 161
G +K PEG + EL +G P + + +++ + D R
Sbjct: 68 YGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGEN 127
Query: 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
AA+ R+R A A G++ + P + + EG +F +
Sbjct: 128 AAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL 173
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 440 bits (1134), Expect = e-151
Identities = 115/269 (42%), Positives = 163/269 (60%), Gaps = 16/269 (5%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F + A+L+ S QL +E + V++ P+FRAE S T RHL EFW +E E A+ DL
Sbjct: 177 KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDL 236
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
D M E V +M L+ ++E + + L+ PF RI+Y EA+++
Sbjct: 237 WDIMKVEEELVSYMVQRTLELRKKEIEMFRDD-----LTTLKNT-EPPFPRISYDEAIDI 290
Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLK 476
L+ +G VEWG DL ++ ER LTE +F +P VY YPK IKAFYM+ + +D +
Sbjct: 291 LQ---SKGV----NVEWGDDLGADEERVLTE-EFDRPFFVYGYPKHIKAFYMKEDPNDPR 342
Query: 477 TVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGF 535
V A D+L P+ GE+IGGSQRE+ YD + +RI + G+ + YEWYLDLRR+G+V HSGF
Sbjct: 343 KVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGF 402
Query: 536 GLGFERMILFATGIDNIRDVIPFPRYPGR 564
GLG ER++ + +D+IR FPR P R
Sbjct: 403 GLGVERLVAWVLKLDHIRWAALFPRTPAR 431
Score = 182 bits (464), Expect = 8e-52
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 11/182 (6%)
Query: 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA 90
+I+ + + + L G++VR+ GWV T GK FL + D + +Q +V K+V
Sbjct: 1 MIEKVYCQ-EVKPELDGKKVRLAGWVYTNMRVGK--KIFLWIRDSTG--IVQAVVAKNVV 55
Query: 91 -----DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT 145
+ + + + V VEG++K E+ V+K+ + V P + +
Sbjct: 56 GEETFEKAKKLGRESSVIVEGIVKADE-RAPGGAEVHVEKLEVIQAVSEFPIPENPEQAS 114
Query: 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 205
E L D RT +A+ +++ L A +L K G+ + PI+ T EG +F
Sbjct: 115 PELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLF 174
Query: 206 QV 207
++
Sbjct: 175 KL 176
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 396 bits (1020), Expect = e-136
Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 50/282 (17%)
Query: 289 KDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAE--HSHTSRHLAEF 345
+G + + + LT S L + A + ++ P R E RH EF
Sbjct: 55 GEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEF 114
Query: 346 WMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTP 405
++ E+ + ++D M E V + + +
Sbjct: 115 TQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT-----------------KR 157
Query: 406 FERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIK 465
FE Y+E +E E+G D + E ++P + N P +
Sbjct: 158 FEVFEYSEVLE----------------EFGSDEKASQE-------MEEPFWIINIP---R 191
Query: 466 AFYMRLNDDLKTVAAMDVLVP-KVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDL 524
FY R D D+++P GE+ G +RE Y+ I ++I GL + + YL++
Sbjct: 192 EFYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEI 249
Query: 525 RRFGTVK-HSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 565
+ G +K +G G+G ER++ F G +I +V PFPR PG
Sbjct: 250 AKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIP 291
Score = 88.4 bits (220), Expect = 2e-19
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITT----SDCEGAGEMFQVTT 209
+ I+ I+ + F K+GF ++ II+ + AGE +
Sbjct: 5 EIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 62
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 374 bits (963), Expect = e-125
Identities = 74/267 (27%), Positives = 135/267 (50%), Gaps = 16/267 (5%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F ++AFL S QL E A V V+ P +RAE S T HLAEF ++ EMAF+D
Sbjct: 176 IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADY 235
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
D M E + + + + ++++ + + P +R+ YTEA+E+
Sbjct: 236 NDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE---------VKIPIKRLKYTEAIEI 286
Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKT 477
L +G +++G D+ + R L E + + ++P + FY + +
Sbjct: 287 LR---SKGY----NIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPE 339
Query: 478 VAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGL 537
++ L+ K E++ GS R + +V++ ++ GL E +E++L +G H+GFG+
Sbjct: 340 LSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGM 399
Query: 538 GFERMILFATGIDNIRDVIPFPRYPGR 564
G R+++ TGI ++++++PFPR R
Sbjct: 400 GLARLMVMLTGIQSVKEIVPFPRDKKR 426
Score = 151 bits (384), Expect = 1e-40
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 12/182 (6%)
Query: 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA 90
+ +S D G++V GWV R+ G F+ + D + QV+VDK+ +
Sbjct: 1 MYRSHFIA-DVTPEYDGKEVIWAGWVHLLRDLGG--KKFIILRDKTG--LGQVVVDKNSS 55
Query: 91 --DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI---PKTKLT 145
+ Q + + + V G++K + IEL +++ + P+ K K
Sbjct: 56 AFGISQELTQESVIQVRGIVKADK-RAPRGIELHAEEITLLSKAKA-PLPLDVSGKVKAD 113
Query: 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 205
++ R + AV +I++ A L K+GF+ I TP I S EG ++F
Sbjct: 114 IDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLF 173
Query: 206 QV 207
V
Sbjct: 174 PV 175
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 359 bits (925), Expect = e-119
Identities = 89/274 (32%), Positives = 139/274 (50%), Gaps = 24/274 (8%)
Query: 298 DFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF-S 355
+F AFL S QL + A + VY P FRAE +T+RHL E W ++ EMAF
Sbjct: 179 KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE 238
Query: 356 DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415
D ++ M+ E V +++ +H +++ + ++ PF R++Y +A+
Sbjct: 239 DEEEVMSFLERLVAHAINYVREHNAKELDILNFELEE---------PKLPFPRVSYDKAL 289
Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQK----PVIVYNYPKGIKAFY-MR 470
E+L GK ++ WG D+ +E ER L + + +Y YP K FY M+
Sbjct: 290 EILG---DLGK----EIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMK 342
Query: 471 LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTV 530
++ + A D+ E+ G QRE R+D++ +I++ GL E +E+YL R+G
Sbjct: 343 YDNKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMP 401
Query: 531 KHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
H GFGLG ER+I + NIR+VI FPR R
Sbjct: 402 PHGGFGLGAERLIKQMLDLPNIREVILFPRDRRR 435
Score = 158 bits (402), Expect = 5e-43
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVI---VDKDVADLGQLVPTGTC 101
L G++V+V GWV ++ G FL + D + VD ++ L + +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGG--IKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDV 71
Query: 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI---PKTKLTLEFLRDRIPFRPR 158
V VEG++ P K E+ +K+V + + P+ K K L+ D R
Sbjct: 72 VAVEGVVNFTP-KAKLGFEILPEKIVVLNRAET-PLPLDPTGKVKAELDTRLDNRFMDLR 129
Query: 159 TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
+ A+ +IR+++ A F + GF+ IHTP I + EG E+F +
Sbjct: 130 RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM 178
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 348 bits (895), Expect = e-115
Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 24/272 (8%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF-SD 356
D+F ++A+L S QL + VY P +R E HTSRHL E+ ++ EM F +D
Sbjct: 167 DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD 226
Query: 357 LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE 416
+D M EA + M + L+ D++ + + R+T+ EA
Sbjct: 227 EEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFPQDIPRLTHAEAKR 277
Query: 417 LLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQK----PVIVYNYPKGIKAFYMRLN 472
+L+ + G DL+ E ER L E ++ + V YP+ ++ FY
Sbjct: 278 ILK------EELG--YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPE 329
Query: 473 DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKH 532
+D T + D+L + E+ G QR RY+ + ++ G+ E + YL++ ++G H
Sbjct: 330 ED-GTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPH 387
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
GF +G ER+ G+ N+R FPR R
Sbjct: 388 GGFAIGAERLTQKLLGLPNVRYARAFPRDRHR 419
Score = 147 bits (373), Expect = 4e-39
Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 20/182 (10%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD 88
RVL++ + G++V + G++ R+ G+ FL + D S +QV+
Sbjct: 2 RVLVRDL-------KAHVGQEVELLGFLHWRRDLGR--IQFLLLRDRSG--VVQVVTGG- 49
Query: 89 VADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD---PAKYPIPKTKLT 145
+L + + V G++ +E++ ++V + P + P + +
Sbjct: 50 ----LKLPLPESALRVRGLVV-ENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRAN 104
Query: 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 205
+ L + R A +++ AL +L +Q F I TP + + EG +F
Sbjct: 105 PDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLF 164
Query: 206 QV 207
V
Sbjct: 165 GV 166
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 329 bits (845), Expect = e-107
Identities = 74/275 (26%), Positives = 130/275 (47%), Gaps = 18/275 (6%)
Query: 298 DFFARQAFLTVSGQLQVETYACAV-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+F +A+L S Q + A VY GP FRAE+S+T RH+ EF ++ EMAF +
Sbjct: 220 TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE 279
Query: 357 LKDD-MNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415
+ ++ F+ L ++E + K Y + ++ R+TY E +
Sbjct: 280 HYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGI 336
Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEV---KFQKPV-IVYNYPKGIKAFYMRL 471
E+L GK ++ DL++E+E++L ++ K+ I+ +P I+ FY
Sbjct: 337 EMLR---AAGK----EIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMP 389
Query: 472 NDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEP--YEWYLDLRRFGT 529
+ + + E++ G+QR + +++ R++ GL E + Y D +G
Sbjct: 390 DPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 449
Query: 530 VKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
H+G G+G ER+++F + NIR FPR P R
Sbjct: 450 PPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKR 484
Score = 135 bits (343), Expect = 1e-34
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 32/204 (15%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC------PANLQ 82
RV + A + ++V V R+QG + AFL + + AN +
Sbjct: 23 RVKFVDLDE-----AKDSDKEVLFRARVHNTRQQGA-TLAFLTLRQQASLIQGLVKANKE 76
Query: 83 VIVDKDVADLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYP 138
+ K++ + + V V G++K E T Q +E+ + K+ + A P
Sbjct: 77 GTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA-LP 135
Query: 139 IPKTK---------------LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183
I + L+ D RT T A+ RI+ + +L +
Sbjct: 136 ILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATK 195
Query: 184 GFLYIHTPIITTSDCEGAGEMFQV 207
F +HTP + + EG +F+V
Sbjct: 196 KFTEVHTPKLLGAPSEGGSSVFEV 219
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 330 bits (847), Expect = e-106
Identities = 82/274 (29%), Positives = 127/274 (46%), Gaps = 21/274 (7%)
Query: 298 DFFARQAFLTVSGQLQVETYACAV-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+F R+A+L S QL + V+ GP FRAE+S+T RHL EF ++ EM +
Sbjct: 286 KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE 345
Query: 357 LKDD-MNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415
+ ++ E F+ D + D+++ + K Y + PF R+TY EA+
Sbjct: 346 NYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF------EDLIYRPFLRLTYKEAI 399
Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQK----PVIVYNYPKGIKAFY-MR 470
E+L G+ + D + E L E+ K I+ +P I+ FY M
Sbjct: 400 EMLR---ASGE----TIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMP 452
Query: 471 LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTV 530
DD + DV V E+ G+QR + + R + G+ + Y++ RFG+
Sbjct: 453 DIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSW 511
Query: 531 KHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
H+G G+G ER+ + GI NIR V FPR P R
Sbjct: 512 PHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIR 545
Score = 86.4 bits (214), Expect = 5e-18
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 9/167 (5%)
Query: 50 VRVGGWVKTGREQGKGSF---------AFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100
+ G VK + + + + V+ P +Q+ + + +
Sbjct: 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDI 178
Query: 101 CVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTN 160
E + K + + + R K ++ K++ + D RT
Sbjct: 179 AKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTV 238
Query: 161 TIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
T A+ RI++A FL Q F+ IHTP + EG +F+V
Sbjct: 239 TNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
Score = 58.3 bits (141), Expect = 3e-09
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV--- 85
I+ + +A + V + V+ R +G FL + G Q +V
Sbjct: 50 YTEIEEL------VPAMAEKTVTIRARVQAVRGKGN--MVFLFLRKGI--YTCQALVMKS 99
Query: 86 ---DKDVADLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDP 134
K+ Q + + + G++K + T+Q +E+ V + V + +
Sbjct: 100 ETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEY 155
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 61.2 bits (148), Expect = 4e-12
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKL 282
I+A + ++G V +LK+ KA + ++A V +L K+ LA E +
Sbjct: 6 SGTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPE 65
Query: 283 KPGIPQKDGKIDY 295
P +K
Sbjct: 66 APKGKKKKSGPSS 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 1e-09
Identities = 89/633 (14%), Positives = 171/633 (27%), Gaps = 198/633 (31%)
Query: 6 LPVDQ---VATMDLND--DAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR 60
L V + V D D D + S I I+ D A W
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMP-KSILSKEE-IDHIIMSKD-----AVSGTLRLFWTLL-S 73
Query: 61 EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG-TCVYVEG---MLKNPPEGTK 116
+Q + F+E N + ++ + Q P+ T +Y+E + + K
Sbjct: 74 KQEEMVQKFVE---EVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 117 ------QKI--------ELRVQKVVDV-GMVDPAKYPIPKTKLTLEFLRD-----RIPFR 156
Q ELR K V + G++ KT + L+ ++ F+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCKMDFK 183
Query: 157 PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
+ + + T L+ L I + + + I
Sbjct: 184 --------IFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 217 LEKELIKNPPPSEA-----DIEAAKLVIKEKGEAVAKLKS-------DKAGREAISASVT 264
+ L+K+ P +++ AK A L K + +SA+ T
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAW-----NAF-NLSCKILLTTRFKQVTDFLSAATT 286
Query: 265 ELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQ-LQVETYACAVS- 322
+ L D + + +L Q L E +
Sbjct: 287 THISLDHHSMTLTP---------------DEVKSLLLK--YLDCRPQDLPRE--VLTTNP 327
Query: 323 -NVYTFGPTFRAEHSHTSRHLAEFW---MVEP-----EMAFSDLK-DDMNCAEAYVK--- 369
+ + R + + W + E + + L+ + + + +
Sbjct: 328 RRLSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSV 380
Query: 370 FMCD-----------WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELL 418
F W D M + K + S + + P E T + +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------QPKES-TIS----IP 429
Query: 419 EVAVKEGKHFENKVEWGIDLASEH----ERYLTEVKFQK----PVIVYNYPKGIKAFYMR 470
+ ++ EN+ + H + Y F P + Y FY
Sbjct: 430 SIYLELKVKLENE-------YALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSH 476
Query: 471 LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRF--G 528
+ LK + + ER + + +LD RF
Sbjct: 477 IGHHLKNI-----------------EHPERMTLFR-------------MVFLDF-RFLEQ 505
Query: 529 TVKHSGFGLGFERMILFATGIDNIRDVIPFPRY 561
++H IL + ++ + + Y
Sbjct: 506 KIRHDSTAWNASGSIL-----NTLQQLKFYKPY 533
Score = 38.3 bits (88), Expect = 0.007
Identities = 67/401 (16%), Positives = 113/401 (28%), Gaps = 132/401 (32%)
Query: 68 AFLEVNDGSCPANLQVIV---DKDVADLGQLVPTGTCVYVEGMLKNPPEG-TKQKIELRV 123
AF + SC ++++ K V D L T L + T +++ +
Sbjct: 261 AF----NLSC----KILLTTRFKQVTD--FLSAATTTHIS---LDHHSMTLTPDEVKSLL 307
Query: 124 QKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALA---YATHTFL 180
K +D D +P+ LT P R + IA IR+ LA H
Sbjct: 308 LKYLDCRPQD-----LPREVLTT------NPRR--LSIIAE--SIRDGLATWDNWKHVNC 352
Query: 181 QKQGFLYIHTPIITTS-DCEGAGEM---------FQVTTLISDADKLEKELIKNPPPSEA 230
K T II +S + E F + I L + + S+
Sbjct: 353 DK------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSL-IWFDVIKSDV 404
Query: 231 DIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLE----ERSKLKPGI 286
+ KL ++ + K K +I + EL EN L + +
Sbjct: 405 MVVVNKLHKY----SLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 287 PQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFW 346
D Y +F +SH HL
Sbjct: 460 DSDDLIPPYLDQYF----------------------------------YSHIGHHLKNIE 485
Query: 347 MVEPEMAFS----DLK--------------------DDMNCAEAYVKFMCD--WLLDHCF 380
E F D + + + + Y ++CD +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 381 DD-MEFMAK------NYDKSCINRLRMVASTPFERITYTEA 414
+ ++F+ K + + LR+ E I + EA
Sbjct: 546 NAILDFLPKIEENLICSKYTDL--LRIALMAEDEAI-FEEA 583
Score = 31.4 bits (70), Expect = 0.98
Identities = 37/275 (13%), Positives = 68/275 (24%), Gaps = 99/275 (36%)
Query: 15 DLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQG----KGSFAFL 70
DL + + + + I + W ++ + S L
Sbjct: 317 DLPREVLTTNPR----RLSII------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 71 EVNDGSCPANLQ------VIVDKDVADLGQLVPTGT-CVY--------VEGML------- 108
E PA + + +PT + V ++
Sbjct: 367 E------PAEYRKMFDRLSVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 109 ---KNPPEGT----------KQKIELRVQ---KVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
K P E T K K+E +VD Y IPKT F D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------HYNIPKT-----FDSDD 463
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQG---------FL---YIHTPII-TTSDCE 199
+ + + + H + FL ++ I ++
Sbjct: 464 LIPPYLDQYFY------SHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 200 GAGEMFQVTTLISDADKLEKELIKNPPPSEADIEA 234
+G + + + + N P E + A
Sbjct: 516 ASGS---ILNTLQQLKFYKPYICDNDPKYERLVNA 547
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 50.3 bits (121), Expect = 9e-07
Identities = 51/280 (18%), Positives = 88/280 (31%), Gaps = 94/280 (33%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
V+ +FR E H EF M+E D+ MN + ++ + D
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD---------- 160
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV--------------ELLEVAVKEGKHFE 429
E ++Y +A +L EVA K
Sbjct: 161 -------------------CPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNV 201
Query: 430 NKVEWG----IDLASEH--ERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDV 483
E + L E + + K P VY++P + +++ +
Sbjct: 202 ADTEEDRDTLLQLLFTFGVEPNIGKEK---PTFVYHFPASQASL-AQISTE--------- 248
Query: 484 LVPKVGE----LIGGS--------------QREERY--DVIKSRIEDMGLPLEPY-EWYL 522
+V E G Q++ R+ D K GLP P + +
Sbjct: 249 -DHRVAERFEVYYKGIELANGFHELTDAREQQQ-RFEQDNRKR--AARGLPQHPIDQNLI 304
Query: 523 DLRRFG---TVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
+ + G SG LG +R+++ A G + + +VI F
Sbjct: 305 EALKVGMPDC---SGVALGVDRLVMLALGAETLAEVIAFS 341
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 50.2 bits (121), Expect = 1e-06
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 490 ELIGGSQREERYDVIKSRIEDMGLPLEPYE----WYLDLRRFGTVKHSGFGLGFERMILF 545
E+ GGS R + +G+ E ++L+ +G H G G +R++
Sbjct: 476 EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLAL 535
Query: 546 ATGIDNIRDVIPFP 559
TG +IR+VI FP
Sbjct: 536 MTGSPSIREVIAFP 549
Score = 44.8 bits (107), Expect = 6e-05
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 17/172 (9%)
Query: 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVD--KDVADLGQLVPTGT 100
G +V + GWV R+ G FL++ D +Q++ + V
Sbjct: 12 ETHVGEEVVLEGWVNRRRD--LGGLIFLDLRDRE--GLVQLVAHPASPAYATAERVRPEW 67
Query: 101 CVYVEGMLKNPPEGTKQ----KIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRD----R 152
V +G+++ PE + ++E+ + + + +P+ E R
Sbjct: 68 VVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELR 127
Query: 153 IPFR---PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
+ +R R + R+R+ + A FL ++GF+ + TP +T S EGA
Sbjct: 128 LKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
Score = 29.4 bits (67), Expect = 3.4
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 22/73 (30%)
Query: 344 EFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403
+F ++ EM+F +++D + E + H F + A +
Sbjct: 234 DFTQLDLEMSFVEVEDVLELNERLMA--------HVFRE----ALGVE----------LP 271
Query: 404 TPFERITYTEAVE 416
PF R++Y EA+E
Sbjct: 272 LPFPRLSYEEAME 284
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 49.0 bits (118), Expect = 3e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 490 ELIGGSQREERYDVIKSRIEDMGLPLEPYE----WYLDLRRFGTVKHSGFGLGFERMILF 545
E+ GGS R D+ ++ +G+ E + LD ++GT H+G G +R+ +
Sbjct: 482 EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTML 541
Query: 546 ATGIDNIRDVIPFP 559
TG DNIRDVI FP
Sbjct: 542 LTGTDNIRDVIAFP 555
Score = 46.3 bits (111), Expect = 2e-05
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL---VPTGTC 101
G+QV + GWV R+ GS F+++ D +QV D D AD +L + C
Sbjct: 13 HVGQQVTLCGWVNRRRD--LGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFC 68
Query: 102 VYVEGMLKNPPEGTKQ------KIELRVQKVVDVGMVDPAKY-PIPKTKLTLEFLRDRIP 154
+ V G ++ E +IE+ + +++ A P+ + E R +
Sbjct: 69 IQVTGTVRARDEKNINRDMATGEIEVLASSLT---IINRADVLPLDSNHVNTEEARLK-- 123
Query: 155 FR---PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
+R R +A + R + F+ GFL I TP++T + EGA
Sbjct: 124 YRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
Score = 29.0 bits (66), Expect = 5.5
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 23/73 (31%)
Query: 344 EFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403
EF ++ E +F EA V+ H + + K D
Sbjct: 228 EFTQIDVETSFMTAPQVREVMEALVR--------HLWLE----VKGVD-----------L 264
Query: 404 TPFERITYTEAVE 416
F +T+ EA
Sbjct: 265 GDFPVMTFAEAER 277
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 9e-06
Identities = 75/488 (15%), Positives = 140/488 (28%), Gaps = 168/488 (34%)
Query: 11 VATMDLNDDAVQ-------RHQFSDRVLIKSILTRPDGGA---GLAGRQVRV----GGWV 56
A + +D ++ + R++ K + A + ++ GG
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-- 162
Query: 57 KTGREQGKGSFAFLEVND--GSCPANLQVIVDKDVADLGQLVPTGTC---VYVEGM---- 107
QG F E+ D + + ++ L +L+ T V+ +G+
Sbjct: 163 -----QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 108 -LKNP---PEGTKQKIELRVQKVVD-----------VGMVDPAKYPIP--KTKLTLEFLR 150
L+NP P+ D +G++ A Y + T LR
Sbjct: 218 WLENPSNTPD-------------KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 151 DRIPFRPRTNT------IAAVA------------RIRNALAYATHTFLQ-KQGFLYIHTP 191
+ + T + AVA +R A+ ++ + + P
Sbjct: 265 SYL----KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 192 IITTSDCEGAGE-----MFQVT-----TLISDADKLEKELIKNPPPSEADIEAAKLVIKE 241
D E M ++ + +K L P+ +E + LV
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----PAGKQVEIS-LVN-- 372
Query: 242 KGEAVAKLKSDKAGREA--ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDF 299
G + +S L L K K G+ Q +I +++
Sbjct: 373 -------------GAKNLVVSGPPQSLYGLNLTLRKA----KAPSGLDQS--RIPFSE-- 411
Query: 300 FARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKD 359
R+ L S + F P HSH L A +
Sbjct: 412 --RK--LKFSNR---------------FLPVASPFHSH---LLVP--------ASDLINK 441
Query: 360 DMNCAEAYVKFMCDWLLDHCFD-----DMEFMAKNYDKSCINRL-RMVASTP--FERITY 411
D+ + V F + +D D+ + S R+ + P +E T
Sbjct: 442 DL--VKNNVSFNAKDIQIPVYDTFDGSDL----RVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 412 TEAVELLE 419
+A +L+
Sbjct: 496 FKATHILD 503
Score = 40.8 bits (95), Expect = 0.001
Identities = 41/269 (15%), Positives = 77/269 (28%), Gaps = 106/269 (39%)
Query: 306 LTVS-GQLQVETYACAVSNVYTFG-PTFRAEHSHTSRHLAEF--WMVEPEMAFSDLKDDM 361
LT+S G L+ + PT A S+ +F + EP F+ +
Sbjct: 9 LTLSHGSLE-----------HVLLVPT--ASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 362 NCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVA 421
AE KF + +++ + S + + ++L +
Sbjct: 56 TPAELVGKF------------LGYVSSLVEPSKVGQFD----------------QVLNLC 87
Query: 422 VKEGKHFENKVEWGID-------LASEHERYLTEVKFQKPVIVYNY-----------PKG 463
+ FEN G D L E++ L + K ++ NY K
Sbjct: 88 L---TEFENCYLEGNDIHALAAKLLQENDTTLVKTKE----LIKNYITARIMAKRPFDKK 140
Query: 464 IK-AFYMRLNDDLKTVAAMDVLVPKVGELIGGSQ-------RE--ERYDV----IKSRIE 509
A + + + + A + GG Q E + Y + I+
Sbjct: 141 SNSALFRAVGEGNAQLVA----------IFGG-QGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 510 DMGLPLEP-----------YEWYLDLRRF 527
L + L++ +
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEW 218
Score = 33.1 bits (75), Expect = 0.35
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 39/142 (27%)
Query: 26 FSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGS-----CPAN 80
L++ + R G+ + V E G+ ++ + +N G
Sbjct: 1779 IES--LVEVVFYR-----GMTMQVA-----VPRD-ELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 81 LQVIVDKDVADLGQLV-------PTGTCVYVEGMLKNPPEGTKQKIEL--RVQKVVDVGM 131
LQ +V++ G LV YV G + ++ V + +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQ--YVAA-------GDLRALDTVTNVLNFIKLQK 1876
Query: 132 VDPAKYPIPKTKLTLEFLRDRI 153
+D + L+LE + +
Sbjct: 1877 IDIIELQK---SLSLEEVEGHL 1895
Score = 31.9 bits (72), Expect = 0.73
Identities = 45/243 (18%), Positives = 75/243 (30%), Gaps = 71/243 (29%)
Query: 70 LEVNDGS-CPANLQVI------VDKDVADLGQLVPTGTCVYVEGMLKN---------PPE 113
LE N+G P L + V V +P G V + L N PP+
Sbjct: 328 LENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQ 384
Query: 114 GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTI----------- 162
+ + L ++K K L+ + RIPF R
Sbjct: 385 -SLYGLNLTLRKA--------------KAPSGLD--QSRIPFSERKLKFSNRFLPVASPF 427
Query: 163 ------AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
A I L +F K + I P+ T D G +V + S +++
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKD--IQI--PVYDTFD----GSDLRVLS-GSISER 478
Query: 217 LEKELIKNPP--PSEADIEAAKLV------IKEKGEAVAKLKSDKAGREAISASVTELTK 268
+ +I+ P + +A ++ G + K D G I A ++
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK-DGTGVRVIVAGTLDINP 537
Query: 269 AKE 271
+
Sbjct: 538 DDD 540
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 44.4 bits (106), Expect = 8e-05
Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 34/159 (21%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
V+ FR E RH EF M+E MA++D D + E+ + +
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLA----QEVLGTT 308
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV----------------ELLEVAVKEGKH 427
+ Y + + PFE++T EA+ +A G
Sbjct: 309 KV---TYGEHVFD-----FGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGIT 360
Query: 428 FENKVEWG--IDLASEHERYLTEVKFQKPVIVYNYPKGI 464
E G + + + E +P + YP +
Sbjct: 361 VEKSWGLGRIVTEIFDE---VAEAHLIQPTFITEYPAEV 396
Score = 35.6 bits (83), Expect = 0.043
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
+G G+G +RMI+ T IRDVI FP
Sbjct: 472 AGLGIGIDRMIMLFTNSHTIRDVILFP 498
Score = 28.3 bits (64), Expect = 7.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV 89
+V V G + T R GK SF L+ D +Q+ V +D
Sbjct: 63 LNIEVSVAGRMMTRRIMGKASFVTLQ--DVG--GRIQLYVARDS 102
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 39.5 bits (92), Expect = 8e-05
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKD 290
I +GE V KLK++KA + ++ +V L K + + PG+
Sbjct: 6 IAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTG-KEYVPGLEHHH 56
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 44.4 bits (106), Expect = 9e-05
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 33/158 (20%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
VY G FR E T RH EF M+E A++D +D M E + + +L
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVL----GTT 299
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV---------------ELLEVAVKEGKHF 428
+ Y + ++ + + R+ +A+ E E+A + G
Sbjct: 300 KI---QYGEHLVD-----LTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEV 351
Query: 429 ENKVEWG--IDLASEHERYLTEVKFQKPVIVYNYPKGI 464
+ +G ++ E E K +P +Y +P I
Sbjct: 352 APHMTFGHIVNEFFEQ---KVEDKLIQPTFIYGHPVEI 386
Score = 35.9 bits (84), Expect = 0.034
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +R+++ T +IRDV+ FP
Sbjct: 462 GGLGIGVDRLVMLLTNSPSIRDVLLFP 488
Score = 28.6 bits (65), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD 88
+V V G + T R GK FA ++ D + +Q+ V +D
Sbjct: 55 QQIEVAVAGRIMTKRGMGKAGFAHIQ--DVT--GQIQIYVRQD 93
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 38.7 bits (90), Expect = 2e-04
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIP 287
+ +G+ V +LK+ KA +E + A+V +L K + + KPG P
Sbjct: 9 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEY-KPGNP 56
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 39.3 bits (91), Expect = 2e-04
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 227 PSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGI 286
A+ A + ++K +GE V LK KA E I V +L K K L E + K
Sbjct: 6 SGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKT 65
Query: 287 P 287
P
Sbjct: 66 P 66
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 40.0 bits (93), Expect = 0.002
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 226 PPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPG 285
+E + +L ++++G+ V KLK DKA + + +V EL K L +E +
Sbjct: 4 AGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEA-KELALQPKD 62
Query: 286 IPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGP 329
K++ D R+ F + Y VS +Y FGP
Sbjct: 63 DIVDRAKME---DTLKRRFFYDQAF----AIYG-GVSGLYDFGP 98
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 39.5 bits (93), Expect = 0.003
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 38/163 (23%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
V+ FR E RH EF M+E A++D + M+ E ++
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAA----VDALGTA 329
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAV----------------ELLEVAVKEGKH 427
Y ++ + PF R+T T+A+ L + G
Sbjct: 330 TI---QYQGRELD-----LAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVD 381
Query: 428 FENKVE--WG----IDLASEHERYLTEVKFQKPVIVYNYPKGI 464
G E E + +P + +YP +
Sbjct: 382 VTQPAFLNAGIGALQLALFEE---TAEAQLWEPTFIIDYPIEV 421
Score = 35.6 bits (83), Expect = 0.048
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
G G+G +R+++ T IRDV+ FP
Sbjct: 497 GGCGIGIDRLVMLLTDSPTIRDVLLFP 523
Score = 28.7 bits (65), Expect = 6.6
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD 88
+V + G + R GK SFA ++ DGS +Q V
Sbjct: 85 KSLEVAIAGRMMLKRVMGKASFATVQ--DGS--GQIQFFVTPA 123
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 37.9 bits (89), Expect = 0.008
Identities = 35/167 (20%), Positives = 50/167 (29%), Gaps = 42/167 (25%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLL-----DH 378
VY G FR E H EF E MA++D D M E V M + +
Sbjct: 247 VYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTY 305
Query: 379 CFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE---------------------L 417
D E A + D + PF RI E +E L
Sbjct: 306 HPDGPEGQAYDVD----------FTPPFRRINMVEELEKALGMKLPETNLFETEETRKIL 355
Query: 418 LEVAVKEGKHFENKVEWG--IDLASEHERYLTEVKFQKPVIVYNYPK 462
++ V + +D EV P + ++P+
Sbjct: 356 DDICVAKAVECPPPRTTARLLDKLVGE---FLEVTCINPTFICDHPQ 399
Score = 36.4 bits (85), Expect = 0.022
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFP 559
+G+G+G +R+ +F T +NI++V+ FP
Sbjct: 477 AGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 35.7 bits (82), Expect = 0.040
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 534 GFGLGFERMILFATGIDNIRDVIPFPRY 561
GLG ER+ + + ++R+++ Y
Sbjct: 336 NLGLGVERLAMISGNFADVREMVYPQFY 363
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 35.3 bits (81), Expect = 0.051
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 534 GFGLGFERMILFATGIDNIRDVIPFPRY 561
GLG ER+ + + ++R+++ Y
Sbjct: 336 NLGLGVERLAMISGNFADVREMVYPQFY 363
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 35.0 bits (80), Expect = 0.065
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 534 GFGLGFERMILFATGIDNIRDVIPFPRY 561
GLG ER+ + + ++R+++ Y
Sbjct: 336 NLGLGVERLAMISGNFADVREMVYPQFY 363
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 34.6 bits (79), Expect = 0.087
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 534 GFGLGFERMILFATGIDNIRDVIPFPRY 561
GLG ER+ + + ++R+++ Y
Sbjct: 336 NLGLGVERLAMISGNFADVREMVYPQFY 363
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 241 EKGEAVAKLKS-------DKAGREAISASV 263
EK +A+ KL++ D A AI A++
Sbjct: 18 EK-QALKKLQASLKLYADDSAPALAIKATM 46
Score = 32.6 bits (73), Expect = 0.15
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 15/44 (34%)
Query: 270 KENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQ 313
K+ L KL+ + LK Y D + A L + ++
Sbjct: 19 KQALKKLQ--ASLKL----------YADD--SAPA-LAIKATME 47
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 32.9 bits (75), Expect = 0.27
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 534 GFGLGFERMILFATGIDNIRD 554
+GL ER + GI+NIR+
Sbjct: 456 AWGLSLERPTMIKYGINNIRE 476
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain,
chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Length = 136
Score = 30.6 bits (69), Expect = 0.53
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 39 PDGGAGLAGRQVRVGGWVKTG---REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL 95
G+++RVGG V G R+ F + D ++ V + + D L
Sbjct: 20 ETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAE--GSVDVSYEGILPD---L 73
Query: 96 VPTGTCVYVEGMLKN 110
G V V+G L+
Sbjct: 74 FREGQGVVVQGELEK 88
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 31.0 bits (70), Expect = 1.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 534 GFGLGFERMILFATGIDNIRD 554
G G G ER++ NI+
Sbjct: 255 GAGFGLERLLKVKHDFKNIKR 275
Score = 29.8 bits (67), Expect = 2.2
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
++ GP +R E HL EF M+ S
Sbjct: 158 IFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGC 190
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP:
a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Length = 113
Score = 28.6 bits (64), Expect = 2.3
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 11/63 (17%)
Query: 337 HTSRHLA--EFWMVE---PEMAF-----SDLKDDMNCAEAYVKFMCDWLLDH-CFDDMEF 385
T +H + M A D ++ + V + +WL++H D ++
Sbjct: 50 CTGKHFLNEQQLMQASQYAGYAEHKKAHDDFIHKLDTWDGDVTYAKNWLVNHIKTIDFKY 109
Query: 386 MAK 388
K
Sbjct: 110 RGK 112
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 2.5
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 211 ISDADKL--EKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKS---DKAGREAISASVTE 265
I+ AD+L E E I+ + E K ++E A ++ +KA ++ + E
Sbjct: 74 IAQADRLTQEPESIR-----KWREEQRKR-LQELDAASKVMEQEWREKAKKD-----LEE 122
Query: 266 LTK-AKENLAKLEERSK 281
+ E + K + ++
Sbjct: 123 WNQRQSEQVEKNKINNR 139
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 29.4 bits (66), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 534 GFGLGFER--MILFATGIDNIRD 554
GLG ER MIL+ G D++R
Sbjct: 325 NLGLGVERLAMILY--GYDDVRK 345
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 29.1 bits (66), Expect = 3.4
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 22/80 (27%)
Query: 213 DADKLEKELI--KNPPPSEAD--IEAAKLVIKEKGE------------AVAKLKSDKAG- 255
+ D + L K EA +E+ + A A L G
Sbjct: 133 EQDVKARMLAEQKV----EAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGD 188
Query: 256 -REAISASVTELTKAKENLA 274
+AI ++ + K ++ A
Sbjct: 189 DVDAIEQAIKNVDKQTQDFA 208
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 3.4
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 21/43 (48%)
Query: 489 GELI----GGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRF 527
G+++ G V+ ++ D EW R F
Sbjct: 41 GDVVCALCG--------LVLSDKLVDTR-S----EW----RTF 66
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 29.2 bits (65), Expect = 3.5
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 12/101 (11%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVE------PEMAFSDLKDDMNCAEAYVK-----FMC 372
FR E S L F M E P+ + M A+A + F
Sbjct: 171 FDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRV 230
Query: 373 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTE 413
D+ D F + M K + ++ E T
Sbjct: 231 DYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEE-QPTA 270
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 29.2 bits (65), Expect = 4.5
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 534 GFGLGFER--MILFATGIDNIRDVI 556
GLG ER MI++ G +++R ++
Sbjct: 329 NLGLGVERLAMIIY--GYEDVRAMV 351
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 28.6 bits (65), Expect = 5.9
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 437 DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-------AMDVLVPKVG 489
A+E R + + P ++ K F +L + +A A++ P +
Sbjct: 320 QEAAEFTRRMKG---EMPS---DFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLP 373
Query: 490 ELIGGS 495
E +GGS
Sbjct: 374 EFLGGS 379
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A
{Haliotis fulgens} SCOP: a.19.1.1
Length = 141
Score = 27.8 bits (61), Expect = 6.0
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 498 EERYDVIKSRIEDMGLPLEPYEW----YLDLRRFGTVKHS 533
+E + R DM L P ++ R
Sbjct: 23 DEEMHKLVKRFRDMRWNLGPGFVFLLKKVNRERMMRYCMD 62
>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite
oxidase, molybdopterin, C-type cytochrome, heme,
electron transport; HET: MSS HEC; 1.8A {Starkeya
novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*
Length = 373
Score = 28.5 bits (64), Expect = 6.8
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 3 DNELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGW 55
+P + A + +R ++S +T + GA + +V + G
Sbjct: 235 AYRIPDNACACTEPGKAPTAT-IPINRFDVRSFITNVENGASVKAGEVPLRGI 286
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 28.0 bits (63), Expect = 6.9
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 213 DADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKE- 271
+AD+ +EL++ + + + + ++E G+ K + AI +++T L A +
Sbjct: 136 EADRKFEELVQTRNQGDHLLHSTRKQVEEAGD-----KLPADDKTAIESALTALETALKG 190
Query: 272 -NLAKLEERSKLKPGIPQKDGKIDYTQ 297
+ A +E + + + QK +I Q
Sbjct: 191 EDKAAIEAKMQELAQVSQKLMEIAQQQ 217
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 28.6 bits (65), Expect = 7.4
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 459 NYPKGIKAFYMRLNDDLKTVA-------AMDVLVPKVGELIGGS 495
I + + VA ++VL + E+ GGS
Sbjct: 336 GLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGS 379
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 28.3 bits (64), Expect = 7.8
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 437 DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-------AMDVLVPKVG 489
A+E ER + P ++ A N+ +TVA ++ L +
Sbjct: 360 AEAAEFERRMAG---TLPA---DWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLP 413
Query: 490 ELIGGS 495
EL+GGS
Sbjct: 414 ELLGGS 419
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 28.0 bits (63), Expect = 7.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 227 PSEADIEAAKLVIKEKGEAVAKL 249
P+ A+I A+ V+ E + V +
Sbjct: 270 PTAAEIRHARAVLAENTKGVGTV 292
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 27.9 bits (63), Expect = 8.5
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 131 MVDPAKYPIPKTKLTLEFLRDRIPFRPRT 159
M + I K ++ P
Sbjct: 1 MHESVTANIENVKKVAHHIQKLTSIVPEI 29
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 9.2
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 206 QVTTLISDADKLEKELIKNPPPSEADIEAAKLVI----KEKGEAVAKLKSDKAGREAISA 261
+ L ++ K++++++ E +E + EK A K+K + +
Sbjct: 942 RSQQLQAEKKKMQQQMLD----LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 262 SVTELTKAKENLAKLEERSKLKPGIPQKDGKID 294
+LTK ++ L E S L + +++ K
Sbjct: 998 QNNKLTKERKLLE--ERVSDLTTNLAEEEEKAK 1028
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen
binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio
vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Length = 136
Score = 27.2 bits (60), Expect = 9.4
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 335 HSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDH-CFDDMEF 385
H H F + D ++ + DWL++H +D ++
Sbjct: 76 TRHKEIH-RRFVETVLKWEKQLAAGDPEVVMTTLRGLVDWLVNHIMKEDKKY 126
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 28.0 bits (63), Expect = 9.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 535 FGLGFERMILFATGIDNIRD 554
FGLG ER+ + GI +IR
Sbjct: 315 FGLGVERLAMLRYGIPDIRY 334
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,039,847
Number of extensions: 588643
Number of successful extensions: 1534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1456
Number of HSP's successfully gapped: 93
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)