RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008405
(567 letters)
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 177 bits (449), Expect = 7e-52
Identities = 57/281 (20%), Positives = 101/281 (35%), Gaps = 48/281 (17%)
Query: 287 PQKDGKIDYTQDFFARQAFLTVSGQLQVE-TYACAVSNVYTFGPTFRAE--HSHTSRHLA 343
P +G + + + LT S L + A + ++ P R E RH
Sbjct: 52 PAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAY 111
Query: 344 EFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403
EF ++ E+ + ++D M E V + + + +
Sbjct: 112 EFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPK-----------------T 154
Query: 404 TPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKG 463
FE Y+E E + ++ K + + +
Sbjct: 155 KRFEVFEYSE---------------------------VLEEFGSDEKASQEMEEPFWIIN 187
Query: 464 IKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLD 523
I + D +L GE+ G +RE Y+ I ++I GL + + YL+
Sbjct: 188 IPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLE 247
Query: 524 LRRFGTVK-HSGFGLGFERMILFATGIDNIRDVIPFPRYPG 563
+ + G +K +G G+G ER++ F G +I +V PFPR PG
Sbjct: 248 IAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
Score = 63.2 bits (153), Expect = 1e-11
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITT----SDCEGAGEMFQVTTL 210
+ I+ I+ + F K+GF ++ II+ + AGE + +
Sbjct: 6 ISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 171 bits (433), Expect = 2e-49
Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 25/275 (9%)
Query: 291 GKIDYTQ-DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVE 349
G D+F ++A+L S QL + VY P +R E HTSRHL E+ ++
Sbjct: 49 GGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLD 108
Query: 350 PEMAFSDLKDD-MNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408
EM F ++D M EA + M + L+ D++ + + R
Sbjct: 109 VEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW---------PSFPQDIPR 159
Query: 409 ITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQK----PVIVYNYPKGI 464
+T+ EA +L+ E G DL+ E ER L E ++ + V YP+ +
Sbjct: 160 LTHAEAKRILK--------EELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSV 211
Query: 465 KAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDL 524
+ FY +D T + L+ + E+ G QR RY+ + ++ G+ E + YL++
Sbjct: 212 RPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEV 269
Query: 525 RRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFP 559
++G H GF +G ER+ G+ N+R FP
Sbjct: 270 FKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
Score = 62.9 bits (152), Expect = 2e-11
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 210
R A +++ AL +L +Q F I TP + + EG +F V
Sbjct: 7 RGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF 59
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 166 bits (420), Expect = 4e-47
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 10/284 (3%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G P + G + +F +A+L S Q + A VY GP FRAE+S+T RH+
Sbjct: 73 GAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMT 132
Query: 344 EFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402
EF ++ EMAF + + ++ F+ L ++E + K Y + ++
Sbjct: 133 EFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPK 189
Query: 403 STPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPK 462
R+TY E +E+L A KE FE+ + R + F I+ +P
Sbjct: 190 DGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFY---ILDKFPL 246
Query: 463 GIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEP--YEW 520
I+ FY + + + E++ G+QR + +++ R++ GL E +
Sbjct: 247 EIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKD 306
Query: 521 YLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 564
Y D +G H+G G+G ER+++F + NIR FPR P R
Sbjct: 307 YCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKR 350
Score = 57.6 bits (138), Expect = 1e-09
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 210
RT T A+ RI+ + +L + F +HTP + + EG +F+VT
Sbjct: 36 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYF 88
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 150 bits (380), Expect = 2e-41
Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 12/274 (4%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+ +L ++ +L ++ + RH EF M+E MA++D
Sbjct: 67 NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADY 126
Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
D + E+ + + +L ++ K A + T ++
Sbjct: 127 HDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDN 186
Query: 418 LEV--AVKEGKHFENKVEWGID-LASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDD 474
+ A+ E + WG+ + +E + E +P + YP + R + +
Sbjct: 187 FDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVN 246
Query: 475 LKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE--------PYEWYLDLRR 526
+ + + E+ G + R ++ E Y+
Sbjct: 247 PEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALE 305
Query: 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 560
+G +G G+G +RMI+ T IRDVI FP
Sbjct: 306 YGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
Score = 60.2 bits (145), Expect = 2e-10
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 209
+ +R+ + A F+ +GF+ + TP++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH 66
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 150 bits (378), Expect = 3e-41
Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 14/274 (5%)
Query: 295 YTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMV-EPEM 352
+ +F AFL S QL E + + VY P FRAE +T+RHL E W +
Sbjct: 73 FPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 132
Query: 353 AFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412
D ++ M+ E V +++ +H +++ + ++ + PF R++Y
Sbjct: 133 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYD 183
Query: 413 EAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN 472
+A+E+L GK + + +Y+ E + +Y YP K FY+
Sbjct: 184 KALEILG---DLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKY 240
Query: 473 DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKH 532
D+ + L + E+ G QRE R+D++ +I++ GL E +E+YL R+G H
Sbjct: 241 DNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPH 300
Query: 533 SGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 566
GFGLG ER+I + NIR+VI FPR R
Sbjct: 301 GGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334
Score = 51.4 bits (122), Expect = 1e-07
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQ 206
R + A+ +IR+++ A F + GF+ IHTP I + EG E+F
Sbjct: 26 RRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFP 74
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 144 bits (363), Expect = 4e-39
Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 35/281 (12%)
Query: 294 DYTQDFFARQAFLTVSGQLQVETYACAVSNVY-TFGPTFRAEHSHTSRHLAEFWMVEPEM 352
++ + L S QL + + + Y FR E R EF ++ E
Sbjct: 72 VPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVET 130
Query: 353 AFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412
+F EA V+ + + F +T+
Sbjct: 131 SFMTAPQVREVMEALVRHLWLEVKGVDLG-----------------------DFPVMTFA 167
Query: 413 EAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEV--KFQKPVIVYNYPKGIKAFYMR 470
EA + ++ +W + + + + PK + A ++
Sbjct: 168 EAERRYG---SDKPDLRDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELK 224
Query: 471 LNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPL----EPYEWYLDLRR 526
+ A D+++ E+ GGS R D+ ++ +G+ E + + LD +
Sbjct: 225 AAPENAVANAYDMVING-YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALK 283
Query: 527 FGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
+GT H+G G +R+ + TG DNIRDVI FP+ A L
Sbjct: 284 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACL 324
Score = 59.8 bits (144), Expect = 2e-10
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 138 PIPKTKLTLEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIIT 194
P+ + E R + +R R +A + R + F+ GFL I TP++T
Sbjct: 3 PLDSNHVNTEEARLK--YRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLT 60
Query: 195 TSDCEGAGEMFQVT 208
+ EGA + +
Sbjct: 61 KATPEGARDYLVPS 74
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 136 bits (343), Expect = 3e-36
Identities = 56/282 (19%), Positives = 97/282 (34%), Gaps = 38/282 (13%)
Query: 295 YTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ L S QL + A + + FR E +F ++ EM+
Sbjct: 81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMS 139
Query: 354 FSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTE 413
F +++D + E + + L PF R++Y E
Sbjct: 140 FVEVEDVLELNERLMAHVFREALGVELP----------------------LPFPRLSYEE 177
Query: 414 AVELLEVAV----KEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM 469
A+E +EG F V++ + E E T + +P+ +
Sbjct: 178 AMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWT---YMHHPFTSPHPE---DLPL 231
Query: 470 RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGL----PLEPYEWYLDLR 525
D + A LV E+ GGS R + +G+ E + ++L+
Sbjct: 232 LEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEAL 291
Query: 526 RFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 567
+G H G G +R++ TG +IR+VI FP+ D
Sbjct: 292 EYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDP 333
Score = 53.6 bits (128), Expect = 3e-08
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQ 206
R + R+R+ + A FL ++GF+ + TP +T S EGA +
Sbjct: 32 RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV 80
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 49.8 bits (119), Expect = 2e-08
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD 88
RVL++ + G++V + G++ R+ G+ FL + D S +QV+
Sbjct: 2 RVLVRDL-------KAHVGQEVELLGFLHWRRDLGR--IQFLLLRDRSG--VVQVVTGGL 50
Query: 89 VADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP 140
+L + + V G++ + +E++ ++V ++ PA P P
Sbjct: 51 -----KLPLPESALRVRGLVVENAKAP-GGLEVQAKEVE---VLSPALEPTP 93
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 49.7 bits (118), Expect = 6e-08
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVD-- 86
RV + A + ++V V R+QG + AFL + + V +
Sbjct: 23 RVKFVDLDE-----AKDSDKEVLFRARVHNTRQQGA-TLAFLTLRQQASLIQGLVKANKE 76
Query: 87 ----KDVADLGQLVPTGTCVYVEGMLKNPPEGTK----QKIELRVQKV 126
K++ + + V V G++K E K Q +E+ + K+
Sbjct: 77 GTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKI 124
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 42.7 bits (100), Expect = 8e-06
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
G +V + GWV R+ G FL++ D L + V V +
Sbjct: 15 VGEEVVLEGWVNRRRDLGG--LIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAK 72
Query: 106 GMLKNPPEGTKQ----KIELRVQKV 126
G+++ PE + ++E+ + +
Sbjct: 73 GLVRLRPEPNPRLATGRVEVELSAL 97
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 40.0 bits (93), Expect = 8e-05
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVY 103
G+QV + GWV R+ G F+++ D + D+ A L + C+
Sbjct: 13 HVGQQVTLCGWVNRRRDLGS--LIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IELRVQKV 126
V G ++ E + IE+ +
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSL 99
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
second repeated element {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 56
Score = 35.4 bits (82), Expect = 9e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGI 286
I +GE V KLK++KA + ++ +V L K + + PG+
Sbjct: 6 IAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTG-KEYVPGL 52
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
second repeated element {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 35.4 bits (82), Expect = 0.001
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIP 287
+ +G+ V +LK+ KA +E + A+V +L K + + KPG P
Sbjct: 9 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTG-QEYKPGNP 56
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 33.1 bits (76), Expect = 0.005
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 228 SEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276
S ++ + I +GE V LK+ A ++ I ++V L K +
Sbjct: 2 SLLELFNS---IATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAA 47
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 34.7 bits (79), Expect = 0.026
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 349 EPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMV-ASTPFE 407
P + + L+ A+ + HC +E + ++ L +V A
Sbjct: 359 RPMVIHNFLQSVRLLADG-----MESFNKHCAVGIEPNRERINQLLNESLMLVTALNTH- 412
Query: 408 RITYTEAVELLEVAVKEGKHF 428
I Y +A E+ + A KEG
Sbjct: 413 -IGYDKAAEIAKKAHKEGLTL 432
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 31.6 bits (71), Expect = 0.23
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 535 FGLGFER--MILFATGIDNIRD 554
FGLG ER M+ + GI +IR
Sbjct: 231 FGLGVERLAMLRY--GIPDIRY 250
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 31.2 bits (70), Expect = 0.35
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 349 EPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408
+P M + L +A HC + ++ + + + M+ + +
Sbjct: 361 KPVMIANLLNSIRLITDA-----AYSFRVHCVEGIKANEPRIHEL-LTKSLMLVTALNPK 414
Query: 409 ITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQK 453
I Y A ++ + A K+G + A E LTE +F +
Sbjct: 415 IGYDAASKVAKNAHKKGITL-------KESALELG-VLTEKEFDE 451
>d1gaka_ a.19.1.1 (A:) SP18 {Green abalone (Haliotis fulgens)
[TaxId: 6456]}
Length = 137
Score = 29.1 bits (65), Expect = 0.68
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 498 EERYDVIKSRIEDMGLPLEPYEW----YLDLRRFGTVKHS 533
+E + R DM L P ++ R
Sbjct: 23 DEEMHKLVKRFRDMRWNLGPGFVFLLKKVNRERMMRYCMD 62
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 28.0 bits (62), Expect = 1.4
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 32 IKSILTRPDGGAGLAGRQVRVGGWVKTGREQG 63
++S +T+P GA + ++ V G+ +G +
Sbjct: 4 VQSAVTQPRPGAAVPPGELTVKGYAWSGGGRE 35
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal
domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 56
Score = 25.3 bits (56), Expect = 3.3
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 228 SEADIEAAKLVIKEKGEAVAKLKSDK 253
D++ A+ + ++ + K+ +
Sbjct: 29 CGGDLKQAESWLHKQAQKEGWSKAAR 54
>d3ckca1 a.118.8.6 (A:42-551) Starch utilization system protein SusD
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 510
Score = 28.0 bits (61), Expect = 3.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 497 REERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVI 556
+E E LE DL RFG + + ++ + T + + +
Sbjct: 441 IDEW------ARE---FYLEGRRRS-DLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKY 490
Query: 557 PFP 559
P P
Sbjct: 491 PIP 493
>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste
dyscritum) [TaxId: 6436]}
Length = 113
Score = 26.8 bits (59), Expect = 3.7
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 335 HSHTSRHLA--EFWMVE---PEMAF-----SDLKDDMNCAEAYVKFMCDWLLDH-CFDDM 383
T +H + M A D ++ + V + +WL++H D
Sbjct: 48 RRCTGKHFLNEQQLMQASQYAGYAEHKKAHDDFIHKLDTWDGDVTYAKNWLVNHIKTIDF 107
Query: 384 EFMAK 388
++ K
Sbjct: 108 KYRGK 112
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 127
Score = 26.9 bits (59), Expect = 3.7
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 32 IKSILTRPDGGAGLAGRQVRVGGWVKTGREQG 63
++S + + + +V + G+ +G +G
Sbjct: 4 VQSAICSVEDVQMVKPGKVSIKGYAVSGGGRG 35
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 27.8 bits (61), Expect = 3.9
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 18/146 (12%)
Query: 311 QLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFW--MVEPEMAFSDLKDDMNCAEAYV 368
+V + + F + +P MA+S L+ A+A
Sbjct: 319 PGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVA 378
Query: 369 KFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER-ITYTEAVELLEVAVKEGKH 427
F H +E + ++ + T + I Y +A E+++ A+KE K
Sbjct: 379 SFD-----AHLAQGIEPNLERIEEYLQKNPMLA--TALNKAIGYDKAAEIVKKALKEKKT 431
Query: 428 FENKVEWGIDLASEHERYLTEVKFQK 453
A E YLTE +F +
Sbjct: 432 L-------KQAALE-LGYLTEEEFDR 449
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens
[TaxId: 24]}
Length = 100
Score = 25.7 bits (56), Expect = 6.1
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 46 AGRQVRVGGWVKTG---REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCV 102
AG+++RVGG V G R+ F + + V D + DL + G +
Sbjct: 25 AGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDS--LGGEILVTYDDLLPDLFR---EGQGI 79
Query: 103 YVEGMLKN 110
+G+L
Sbjct: 80 VAQGVLGE 87
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 24.2 bits (53), Expect = 8.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 228 SEADIEAAKLVIKEKGEAVAKLKSDK 253
+ D E A +++E+G A K+D+
Sbjct: 27 AGWDEEKAVQLLRERGAMKAAKKADR 52
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 26.5 bits (57), Expect = 8.5
Identities = 32/242 (13%), Positives = 61/242 (25%), Gaps = 51/242 (21%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM 383
+Y GP FR E R+ +F E + V ++ H +
Sbjct: 104 LYYNGPMFRYERKQKGRY-RQFNQFGVEA--------IGAENPSVDAEVLAMVMHIYQSF 154
Query: 384 EFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHE 443
+ + + + + E V + + + + + +
Sbjct: 155 GLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDK 214
Query: 444 RYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPK---------------- 487
+ + + L+D LV
Sbjct: 215 EAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNP 274
Query: 488 -----VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERM 542
+ L GG RY+ + +E + P E G GF L ER+
Sbjct: 275 NYDGAITTLCGG----GRYNGL---LELLDGPSET----------GI----GFALSIERL 313
Query: 543 IL 544
+L
Sbjct: 314 LL 315
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 26.3 bits (57), Expect = 8.7
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 9/68 (13%)
Query: 495 SQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHS---------GFGLGFERMILF 545
++ + K + D G+ + P E R G G+ +
Sbjct: 52 DLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQ 111
Query: 546 ATGIDNIR 553
I
Sbjct: 112 MHQDKPIE 119
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 26.3 bits (57), Expect = 9.9
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 216 KLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAK 275
+ K +++N P + D K A+ K + + + V E + KEN +
Sbjct: 159 LIIKNILENTPENHPDHSHLK-------HALEKAEE-------LCSQVNEGVREKENSDR 204
Query: 276 LEE 278
LE
Sbjct: 205 LEW 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,155,564
Number of extensions: 107008
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 42
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)