Query 008406
Match_columns 567
No_of_seqs 520 out of 2360
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 11:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03016 Exostosin: Exostosin 99.9 4E-24 8.7E-29 219.9 12.0 161 348-553 2-165 (302)
2 KOG1021 Acetylglucosaminyltran 99.9 5E-23 1.1E-27 223.0 10.5 197 348-560 70-292 (464)
3 KOG1225 Teneurin-1 and related 99.7 2.8E-16 6.1E-21 168.5 12.4 131 102-305 235-365 (525)
4 KOG1225 Teneurin-1 and related 99.5 9.7E-14 2.1E-18 149.1 10.4 165 117-309 173-343 (525)
5 KOG1226 Integrin beta subunit 99.4 2.1E-13 4.6E-18 148.5 9.9 143 126-308 468-621 (783)
6 KOG1226 Integrin beta subunit 99.3 6.7E-12 1.5E-16 136.9 10.5 199 46-310 449-654 (783)
7 KOG0994 Extracellular matrix g 98.8 1.5E-08 3.2E-13 113.8 11.2 184 98-308 839-1099(1758)
8 KOG0994 Extracellular matrix g 98.8 1.1E-08 2.4E-13 114.8 7.0 169 100-309 933-1148(1758)
9 KOG1219 Uncharacterized conser 98.8 1E-08 2.2E-13 120.7 7.0 106 121-309 3865-3979(4289)
10 KOG1219 Uncharacterized conser 98.4 5.1E-07 1.1E-11 107.0 7.0 104 82-200 3865-3977(4289)
11 KOG4289 Cadherin EGF LAG seven 98.4 4E-07 8.7E-12 104.3 5.8 86 64-154 1186-1276(2531)
12 KOG4289 Cadherin EGF LAG seven 98.3 2E-06 4.3E-11 98.8 8.4 67 121-195 1717-1799(2531)
13 PF07974 EGF_2: EGF-like domai 98.0 7.5E-06 1.6E-10 54.7 3.4 27 125-151 6-32 (32)
14 KOG1836 Extracellular matrix g 97.8 0.0002 4.4E-09 87.4 13.6 179 97-311 753-977 (1705)
15 PF07974 EGF_2: EGF-like domai 97.7 2.6E-05 5.6E-10 52.1 3.0 25 282-306 6-32 (32)
16 KOG1217 Fibrillins and related 97.7 0.0004 8.6E-09 75.4 13.0 178 98-310 149-356 (487)
17 KOG1836 Extracellular matrix g 97.7 0.00044 9.6E-09 84.6 13.9 174 98-308 807-1022(1705)
18 KOG1217 Fibrillins and related 97.6 0.00077 1.7E-08 73.2 13.4 177 97-306 106-306 (487)
19 KOG4260 Uncharacterized conser 97.4 0.0002 4.3E-09 70.2 4.9 47 105-153 132-183 (350)
20 KOG3512 Netrin, axonal chemotr 97.3 0.0021 4.5E-08 67.6 11.3 56 256-312 412-483 (592)
21 KOG1214 Nidogen and related ba 97.1 0.002 4.3E-08 71.8 9.5 145 125-305 700-860 (1289)
22 KOG1214 Nidogen and related ba 97.1 0.0023 5E-08 71.3 9.8 159 100-303 715-908 (1289)
23 smart00051 DSL delta serrate l 97.0 0.00055 1.2E-08 53.4 3.3 46 258-306 17-63 (63)
24 smart00051 DSL delta serrate l 97.0 0.0008 1.7E-08 52.5 3.7 47 101-151 17-63 (63)
25 PF00008 EGF: EGF-like domain 96.7 0.0013 2.7E-08 44.1 2.5 27 124-150 3-32 (32)
26 KOG1218 Proteins containing Ca 96.2 0.18 3.9E-06 52.0 15.9 153 134-303 45-209 (316)
27 PF12661 hEGF: Human growth fa 96.1 0.0029 6.2E-08 33.4 1.2 13 139-151 1-13 (13)
28 PF12661 hEGF: Human growth fa 96.0 0.0028 6.1E-08 33.4 0.9 13 294-306 1-13 (13)
29 cd00055 EGF_Lam Laminin-type e 95.8 0.0096 2.1E-07 44.2 3.4 27 127-153 4-34 (50)
30 PF00053 Laminin_EGF: Laminin 95.7 0.0069 1.5E-07 44.7 2.2 27 127-153 3-33 (49)
31 PF00008 EGF: EGF-like domain 95.6 0.0065 1.4E-07 40.6 1.6 24 282-305 4-32 (32)
32 smart00179 EGF_CA Calcium-bind 95.6 0.017 3.7E-07 39.7 3.8 32 121-152 3-39 (39)
33 KOG4260 Uncharacterized conser 94.8 0.021 4.6E-07 56.3 2.9 41 262-308 132-183 (350)
34 cd00054 EGF_CA Calcium-binding 94.7 0.043 9.4E-07 37.2 3.7 32 121-152 3-38 (38)
35 smart00180 EGF_Lam Laminin-typ 94.5 0.042 9.1E-07 40.0 3.3 23 131-153 11-33 (46)
36 PF01414 DSL: Delta serrate li 94.2 0.016 3.4E-07 45.3 0.5 46 256-306 15-63 (63)
37 KOG3512 Netrin, axonal chemotr 93.8 0.43 9.3E-06 50.8 10.1 98 98-200 304-428 (592)
38 KOG1218 Proteins containing Ca 93.6 0.65 1.4E-05 47.8 11.3 20 292-311 281-300 (316)
39 cd00053 EGF Epidermal growth f 93.4 0.1 2.2E-06 34.6 3.4 28 125-152 6-36 (36)
40 smart00181 EGF Epidermal growt 93.2 0.13 2.8E-06 34.5 3.5 27 125-152 6-35 (35)
41 PHA02887 EGF-like protein; Pro 91.9 0.16 3.4E-06 44.0 3.2 28 126-154 93-124 (126)
42 smart00179 EGF_CA Calcium-bind 91.3 0.24 5.2E-06 33.8 3.2 26 282-307 9-39 (39)
43 cd00054 EGF_CA Calcium-binding 90.9 0.27 5.9E-06 33.1 3.1 26 282-307 9-38 (38)
44 cd00055 EGF_Lam Laminin-type e 90.6 0.2 4.4E-06 37.0 2.4 20 289-308 13-34 (50)
45 cd00053 EGF Epidermal growth f 90.4 0.3 6.5E-06 32.3 2.9 26 282-307 6-36 (36)
46 PF01414 DSL: Delta serrate li 89.9 0.088 1.9E-06 41.1 -0.2 45 101-151 17-63 (63)
47 PF07645 EGF_CA: Calcium-bindi 89.1 0.36 7.9E-06 34.2 2.6 27 121-147 3-34 (42)
48 PF00053 Laminin_EGF: Laminin 89.1 0.22 4.9E-06 36.5 1.5 20 289-308 12-33 (49)
49 PHA02887 EGF-like protein; Pro 89.0 0.28 6.1E-06 42.4 2.2 26 283-309 93-124 (126)
50 KOG3607 Meltrins, fertilins an 87.6 0.37 8.1E-06 55.3 2.8 33 121-154 626-658 (716)
51 PF04863 EGF_alliinase: Alliin 86.2 0.48 1E-05 35.4 1.7 29 126-154 18-52 (56)
52 smart00181 EGF Epidermal growt 85.8 0.85 1.8E-05 30.4 2.7 25 282-307 6-35 (35)
53 PF12955 DUF3844: Domain of un 84.9 0.57 1.2E-05 40.1 1.9 31 282-312 13-65 (103)
54 PF04863 EGF_alliinase: Alliin 84.6 0.44 9.6E-06 35.6 0.9 29 282-310 17-53 (56)
55 KOG3607 Meltrins, fertilins an 84.5 1 2.2E-05 51.8 4.2 34 279-312 627-661 (716)
56 PF12955 DUF3844: Domain of un 83.7 0.94 2E-05 38.8 2.7 32 124-155 12-63 (103)
57 PF12947 EGF_3: EGF domain; I 83.4 0.73 1.6E-05 31.6 1.6 25 126-150 7-33 (36)
58 PF09064 Tme5_EGF_like: Thromb 83.3 0.87 1.9E-05 30.6 1.8 21 175-195 6-27 (34)
59 smart00180 EGF_Lam Laminin-typ 82.6 1.2 2.5E-05 32.4 2.5 17 292-308 17-33 (46)
60 PHA03099 epidermal growth fact 79.7 1.3 2.8E-05 39.1 2.1 26 284-310 53-84 (139)
61 PF01683 EB: EB module; Inter 78.0 2.2 4.7E-05 31.6 2.7 31 266-302 16-46 (52)
62 PHA03099 epidermal growth fact 77.9 1.6 3.5E-05 38.5 2.2 28 127-155 53-84 (139)
63 PF12947 EGF_3: EGF domain; I 71.1 2.1 4.6E-05 29.3 1.0 23 283-305 7-33 (36)
64 PF06247 Plasmod_Pvs28: Plasmo 61.1 3.6 7.8E-05 39.0 0.8 133 130-305 10-163 (197)
65 PF07645 EGF_CA: Calcium-bindi 59.1 4.4 9.6E-05 28.6 0.8 21 282-302 10-34 (42)
66 PF01683 EB: EB module; Inter 57.5 11 0.00024 27.7 2.8 22 124-147 25-46 (52)
67 KOG3514 Neurexin III-alpha [Si 44.6 13 0.00027 44.0 1.8 35 120-154 623-661 (1591)
68 PF00954 S_locus_glycop: S-loc 43.1 22 0.00047 30.7 2.7 28 121-148 78-108 (110)
69 KOG3516 Neurexin IV [Signal tr 36.7 23 0.00049 42.5 2.3 35 120-154 545-583 (1306)
70 KOG3514 Neurexin III-alpha [Si 32.4 28 0.00061 41.3 2.1 41 271-311 617-663 (1591)
71 PF12662 cEGF: Complement Clr- 31.8 26 0.00055 21.8 1.0 10 258-268 2-11 (24)
72 KOG1022 Acetylglucosaminyltran 31.6 2.6E+02 0.0056 31.2 9.0 25 399-424 127-151 (691)
73 KOG1388 Attractin and platelet 28.8 38 0.00082 32.9 2.1 26 179-204 104-130 (217)
74 KOG0196 Tyrosine kinase, EPH ( 28.6 76 0.0016 37.0 4.6 64 127-196 248-318 (996)
75 PF14990 DUF4516: Domain of un 28.3 71 0.0015 23.4 2.9 27 9-35 10-36 (47)
76 KOG2264 Exostosin EXT1L [Signa 27.4 2.4E+02 0.0052 31.6 7.9 61 398-482 218-278 (907)
77 PF00919 UPF0004: Uncharacteri 27.3 51 0.0011 28.0 2.4 32 392-424 12-44 (98)
78 COG5111 RPC34 DNA-directed RNA 27.2 76 0.0016 31.2 3.8 57 349-426 140-206 (301)
79 PF06210 DUF1003: Protein of u 25.4 69 0.0015 27.8 2.9 31 10-41 3-33 (108)
80 TIGR02659 TTQ_MADH_Lt methylam 21.6 2.5E+02 0.0054 26.7 5.9 20 12-36 26-45 (186)
81 COG4420 Predicted membrane pro 20.6 76 0.0017 30.2 2.4 35 4-38 51-85 (191)
82 KOG3516 Neurexin IV [Signal tr 20.1 62 0.0013 39.1 2.0 35 278-312 546-586 (1306)
No 1
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=99.91 E-value=4e-24 Score=219.90 Aligned_cols=161 Identities=35% Similarity=0.652 Sum_probs=115.3
Q ss_pred ccCceeEeecCCcccchhhhcCCCCcccCCccccCCCCccccccccccchHHHHHHhhCCCcccCCccCCcEEEEeccce
Q 008406 348 KKRPLLYVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPHRTLNGEEADFFFVPVLDS 427 (567)
Q Consensus 348 ~~~~~IYvYdLP~~fn~~ll~~~~~~~~c~~~~~~~~~~~~~~~~~y~~E~~f~~~ll~s~~rT~dp~eAd~FfVP~~~s 427 (567)
+++++|||||||++||.+|+... .........+++|++|.+||++|++|++||.||+|||+||||+|.+
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~-----------~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~ 70 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPR-----------EDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSS 70 (302)
T ss_pred CCCCEEEEEeCCccccccceecc-----------ccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccc
Confidence 45789999999999999998322 1223334467899999999999999999999999999999999998
Q ss_pred eeeeecCCCCcccccccccccchhHHHHHHHHHHHHHhcCchhhcCCCCCeEEEeccCCCCCCCCccc---cCceEEeec
Q 008406 428 CIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFSWDEGACYAPKEI---WNSMMLVHW 504 (567)
Q Consensus 428 ~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~p~W~r~~G~DH~~v~~~D~g~~~~~~~~---~~~~~l~~~ 504 (567)
+........ .......+.+.+++..+++++|||||++|+||||+.+||+|.+...... ..++.++
T Consensus 71 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 138 (302)
T PF03016_consen 71 CYFHHWWGS----------PNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAV-- 138 (302)
T ss_pred cccccccCC----------ccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhhe--
Confidence 875111111 1111234445667778888999999999999999999999887644321 1111110
Q ss_pred CCCCcCCCcccccccCCCccccccCCCCCCCccCCCCcccccCCcCCcc
Q 008406 505 GNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDA 553 (567)
Q Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~P~kD~~ip~~~~~~~ 553 (567)
... ... ...+|+|++||+||.+.....
T Consensus 139 --------~~~-----~~~---------~~~~~~~~~Di~~P~~~~~~~ 165 (302)
T PF03016_consen 139 --------VAF-----SSF---------SSSCFRPGFDIVIPPFVPPSS 165 (302)
T ss_pred --------ecc-----CCC---------CcCcccCCCCeeccccccccc
Confidence 000 000 145999999999999987765
No 2
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.88 E-value=5e-23 Score=223.01 Aligned_cols=197 Identities=25% Similarity=0.335 Sum_probs=147.8
Q ss_pred ccCceeEeecCCcccchhhhcCCCCcc--------cCCcc-------ccC-------CCCcccc-ccccccchHHHHHHh
Q 008406 348 KKRPLLYVYDLPPEFNSLLLEGRHYKL--------ECVNR-------IYN-------EKNETLW-TDMLYGSQMAFYESI 404 (567)
Q Consensus 348 ~~~~~IYvYdLP~~fn~~ll~~~~~~~--------~c~~~-------~~~-------~~~~~~~-~~~~y~~E~~f~~~l 404 (567)
.-...||||+||+.|+..++..+.... +|.+- ++. ......| .++||++|.+||++|
T Consensus 70 ~~~~~v~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~ 149 (464)
T KOG1021|consen 70 CAGASVYVYNLPSGFDVSLLLFHKQIPTSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRM 149 (464)
T ss_pred ccCcceeeeccchhhhhhhhccCccccccCcchhhhhhhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHH
Confidence 334589999999999999998764332 33321 111 1122345 779999999999999
Q ss_pred h--CCCcccCCccCCcEEEEeccceeeeeecCCCCcccccccccccchhHHHHHHHHHHHHHhcCchhhcCCCCCeEEEe
Q 008406 405 L--ASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFF 482 (567)
Q Consensus 405 l--~s~~rT~dp~eAd~FfVP~~~s~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~p~W~r~~G~DH~~v~ 482 (567)
+ .+++||.||++||+||||||+++++.++.+.+.-+ . .....+++++++.-++++||||||++|+|||||+
T Consensus 150 ~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~ 222 (464)
T KOG1021|consen 150 LRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDER------V-NAILRSILQDYIVALLSKQPYWNRSSGRDHFFVA 222 (464)
T ss_pred hcccCceecCChhhCcEEEEcceeeEehhhhcccCCcc------c-chHHHHHHHHHHHHHHhcCchhhccCCCceEEEe
Confidence 5 67999999999999999999999998876554211 0 1123444555666667899999999999999999
Q ss_pred ccCCCCCCCCccccCceEEeecCCCCcCCCcccccccCCCccccccCCCCCCC-ccCCCCcccccCCcCCccccccccc
Q 008406 483 SWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHS-CFDPEKDLVLPAWKAPDAFVLRSKL 560 (567)
Q Consensus 483 ~~D~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~f~P~kD~~ip~~~~~~~~~~~~~l 560 (567)
+||++..... ..++++++..+++.|...+..++..|. ++.+|| |+ .+||.++..+ .|+.......|+.|
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~i~~~~n~a~ls~~~~~~~-~dv~iP------~~~~~~~~~~~~~-~~~~~~~~~~R~~L 292 (464)
T KOG1021|consen 223 CHDWGDFRRR-SDWGASISLIPEFCNGALLSLEFFPWN-KDVAIP------YPTIPHPLSPPEN-SWQGGVPFSNRPIL 292 (464)
T ss_pred CCcchheeec-cchhhHHHHHHhhCCcceeecccccCC-CcccCC------CccCcCccCcccc-ccccCCCCCCCceE
Confidence 9999987644 457777777777777666777777776 666777 66 8899999988 88888877777666
No 3
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=99.67 E-value=2.8e-16 Score=168.48 Aligned_cols=131 Identities=31% Similarity=0.761 Sum_probs=110.6
Q ss_pred eecCCCCCccccccCccCCCCCCCCCCCCCEEecCCCeEEeCCCCcCCCCCccccccCCCCCCCCCCCCCcccccCCCcc
Q 008406 102 LSGCDSVAKEVDLVEMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHC 181 (567)
Q Consensus 102 ~~~C~~g~~g~~~~~~~~~~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C 181 (567)
.+.|..++.|..|. ...|+..|+++|.|+ .|.|+|++||+|.+|++. .|.. .|++.-
T Consensus 235 ic~c~~~~~g~~c~----~~~C~~~c~~~g~c~--~G~CIC~~Gf~G~dC~e~---~Cp~--------------~cs~~g 291 (525)
T KOG1225|consen 235 ICECPEGYFGPLCS----TIYCPGGCTGRGQCV--EGRCICPPGFTGDDCDEL---VCPV--------------DCSGGG 291 (525)
T ss_pred eeecCCceeCCccc----cccCCCCCcccceEe--CCeEeCCCCCcCCCCCcc---cCCc--------------ccCCCc
Confidence 56688888888776 357999999999999 899999999999999984 3543 366666
Q ss_pred cCCCCeEecCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcccCCCcccccccccccccccc
Q 008406 182 DTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECD 261 (567)
Q Consensus 182 ~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~ 261 (567)
.+.+|+|+|++||+|..|.+.. | ..+|+++|.| +.++|.
T Consensus 292 ~~~~g~CiC~~g~~G~dCs~~~-c---------------------------padC~g~G~C-------------i~G~C~ 330 (525)
T KOG1225|consen 292 VCVDGECICNPGYSGKDCSIRR-C---------------------------PADCSGHGKC-------------IDGECL 330 (525)
T ss_pred eecCCEeecCCCcccccccccc-C---------------------------CccCCCCCcc-------------cCCceE
Confidence 6778899999999988875432 2 4578899999 478999
Q ss_pred cCCCCCCCcccccccCCccCCCCCCCeeeeCCeeecCCCcccCC
Q 008406 262 CKYDGLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWYGVD 305 (567)
Q Consensus 262 C~~~G~~G~~Ce~~~~~~C~~~Cs~~G~C~~G~C~C~~G~~G~~ 305 (567)
|. +||+|..|+.+ . |+++|.|++| |+|+.||.|.+
T Consensus 331 C~-~Gy~G~~C~~~------~-C~~~g~cv~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 331 CD-EGYTGELCIQR------A-CSGGGQCVNG-CKCKKGWRGPD 365 (525)
T ss_pred eC-CCCcCCccccc------c-cCCCceeccC-ceeccCccCCC
Confidence 99 99999999874 3 9999999999 99999999999
No 4
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=99.48 E-value=9.7e-14 Score=149.11 Aligned_cols=165 Identities=28% Similarity=0.510 Sum_probs=108.5
Q ss_pred ccCCCCCCCCCCCCCEEecCCCeEEeCCCCcCCCCCccccccCCCCCCCCCCCCCcccccCCCcccC--CCCeEecCCCc
Q 008406 117 MIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDT--TRAMCFCGEGT 194 (567)
Q Consensus 117 ~~~~~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~--~~g~C~C~~G~ 194 (567)
.++...++.+|+.||.+. .+.|.+..+++|..|... .|+..--. -+.+. .++..|.. ..+.|.|..+|
T Consensus 173 ~~g~~~~~~~~~~hg~~~--~~~~l~~~~~s~~~~~~~---~~~~~~~~---~~r~~--~~~~~~~~~~~~~ic~c~~~~ 242 (525)
T KOG1225|consen 173 ECGQYKCPNDGSGHGRYY--FGNCLSGISASGETCNQL---GCNDDCFR---TGRCR--EGRCFCTAGFFDGICECPEGY 242 (525)
T ss_pred ccceecCCcCCCCCccce--ecccccccCcchhhhhcc---cCCcccee---ccccc--cCcccccccccCceeecCCce
Confidence 344467788888888887 778888888888887653 22211000 00000 01111211 13477888888
Q ss_pred ccCCCCCCCCCCCccC-CCCCCC--CCCCCCCCCCCCCCcc-CCCCCCCcccCCCcccccccccccccccccCCCCCCCc
Q 008406 195 KYPNRPVAEACGFQVN-LPSQPG--APKSTDWAKADLDNIF-TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQ 270 (567)
Q Consensus 195 ~G~~C~~~~~C~~~~~-~~~c~~--~~c~~gw~g~~c~~~~-~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~ 270 (567)
+|+.|.. ..|..... .-.|.+ +.|.+||+|.||++.. ...|++++.| ++++|+|+ +||+|.
T Consensus 243 ~g~~c~~-~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~-------------~~g~CiC~-~g~~G~ 307 (525)
T KOG1225|consen 243 FGPLCST-IYCPGGCTGRGQCVEGRCICPPGFTGDDCDELVCPVDCSGGGVC-------------VDGECICN-PGYSGK 307 (525)
T ss_pred eCCcccc-ccCCCCCcccceEeCCeEeCCCCCcCCCCCcccCCcccCCCcee-------------cCCEeecC-CCcccc
Confidence 8776642 22321111 011222 2357788888887632 4446777766 47899999 999999
Q ss_pred ccccccCCccCCCCCCCeeeeCCeeecCCCcccCCCCCC
Q 008406 271 FCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWYGVDCSIP 309 (567)
Q Consensus 271 ~Ce~~~~~~C~~~Cs~~G~C~~G~C~C~~G~~G~~C~~~ 309 (567)
.|++. .|+.+|++||.|++|+|+|.+||+|..|+++
T Consensus 308 dCs~~---~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 308 DCSIR---RCPADCSGHGKCIDGECLCDEGYTGELCIQR 343 (525)
T ss_pred ccccc---cCCccCCCCCcccCCceEeCCCCcCCccccc
Confidence 99987 6999999999999999999999999999997
No 5
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=99.45 E-value=2.1e-13 Score=148.51 Aligned_cols=143 Identities=26% Similarity=0.512 Sum_probs=101.7
Q ss_pred CCCCCCEEecCCCeEEeCCCCcCCCCCccccccCCCCCCC-CCCCCCcccccCCCcccCCCCeEecCCCcc----cCCCC
Q 008406 126 DCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTP-ELPYGRWVVSICPTHCDTTRAMCFCGEGTK----YPNRP 200 (567)
Q Consensus 126 ~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~-~~~~g~~~~~~C~g~C~~~~g~C~C~~G~~----G~~C~ 200 (567)
.|+++|+++ .|+|.|.+||.|..||... .+...... .-+...-...+|+|..++..|+|.|.+... |+.|+
T Consensus 468 ~C~g~G~~~--CG~C~C~~G~~G~~CEC~~--~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCE 543 (783)
T KOG1226|consen 468 LCHGNGTFV--CGQCRCDEGWLGKKCECST--DELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCE 543 (783)
T ss_pred ccCCCCcEE--ecceecCCCCCCCcccCCc--cccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeee
Confidence 499999999 9999999999999999642 11111000 000011112379988888899999988766 55553
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcccCCCcccccccccccccccccCCCCCCCccccccc-CCc
Q 008406 201 VAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV-SST 279 (567)
Q Consensus 201 ~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~-~~~ 279 (567)
- .+.+| +...+..|.++|.|. .|+|+|. +||+|..|+.+. .+.
T Consensus 544 C--------DnfsC--------------~r~~g~lC~g~G~C~-------------CG~CvC~-~GwtG~~C~C~~std~ 587 (783)
T KOG1226|consen 544 C--------DNFSC--------------ERHKGVLCGGHGRCE-------------CGRCVCN-PGWTGSACNCPLSTDT 587 (783)
T ss_pred c--------cCccc--------------ccccCcccCCCCeEe-------------CCcEEcC-CCCccCCCCCCCCCcc
Confidence 1 11111 112245678888884 7999999 999999998763 346
Q ss_pred cCC----CCCCCeeeeCCeeecCCC-cccCCCCC
Q 008406 280 CVN----QCSGHGHCRGGFCQCDSG-WYGVDCSI 308 (567)
Q Consensus 280 C~~----~Cs~~G~C~~G~C~C~~G-~~G~~C~~ 308 (567)
|.+ .|+++|+|.-|+|+|... |+|..|+.
T Consensus 588 C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG~~CE~ 621 (783)
T KOG1226|consen 588 CESSDGQICSGRGTCECGRCKCTDPPYSGEFCEK 621 (783)
T ss_pred ccCCCCceeCCCceeeCCceEcCCCCcCcchhhc
Confidence 653 599999999999999877 99999997
No 6
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=99.31 E-value=6.7e-12 Score=136.95 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=127.9
Q ss_pred hccccc-ccccccccccccCcCCCCCccccccccCCCCCCCceeeeCCcccccCCceeecCCCCCcccc-ccCccCCCCC
Q 008406 46 QIQNSC-VPIKESAERVTNRVWENSPPQLNLDHRFPADLHNAVVYRNAPWKAEIGRWLSGCDSVAKEVD-LVEMIGGKSC 123 (567)
Q Consensus 46 ~~~~~~-~~~~~~~~~~~n~c~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~C~~g~~g~~-~~~~~~~~~C 123 (567)
++...| -.++...+.....|+++|+.+.|.|.|-++..+.-+.|.-.. .... -.+.|...+=
T Consensus 449 ~v~~~C~C~C~~~~e~~s~~C~g~G~~~CG~C~C~~G~~G~~CEC~~~~----------------~ss~~~~~~Cr~~~~ 512 (783)
T KOG1226|consen 449 IVQYNCECDCQDQGEPNSALCHGNGTFVCGQCRCDEGWLGKKCECSTDE----------------LSSSEEEDKCRENSD 512 (783)
T ss_pred EeeccccccccccCCCCccccCCCCcEEecceecCCCCCCCcccCCccc----------------cCcHhHHhhccCCCC
Confidence 344455 233333344455688888888888877777666555443221 0000 0111111111
Q ss_pred CCCCCCCCEEecCCCeEEeCCCCc----CCCCCccccccCCCCCCCCCCCCCcccccCCCcccCCCCeEecCCCcccCCC
Q 008406 124 KSDCSGQGVCNHELGQCRCFHGFR----GKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKYPNR 199 (567)
Q Consensus 124 ~~~Cs~~G~C~~~~G~C~C~~G~~----G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~~~g~C~C~~G~~G~~C 199 (567)
...|||+|.|. .|+|.|.+... |..||.. ...|.... +..|.|+..+..|.|+|.+||+|..|
T Consensus 513 ~~vCSgrG~C~--CGqC~C~~~~~~~i~G~fCECD-nfsC~r~~----------g~lC~g~G~C~CG~CvC~~GwtG~~C 579 (783)
T KOG1226|consen 513 SPVCSGRGDCV--CGQCVCHKPDNGKIYGKFCECD-NFSCERHK----------GVLCGGHGRCECGRCVCNPGWTGSAC 579 (783)
T ss_pred CCCcCCCCcEe--CCceEecCCCCCceeeeeeecc-Cccccccc----------CcccCCCCeEeCCcEEcCCCCccCCC
Confidence 22699999999 99999988777 9999974 34454432 24788877788899999999998876
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcccCCCcccccccccccccccccCCCCCCCcccccccCCc
Q 008406 200 PVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSST 279 (567)
Q Consensus 200 ~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~~~~ 279 (567)
. | ..+...|. ...+..|+++|.| ..|+|+|.-++|.|.+||.. ..
T Consensus 580 ~----C--~~std~C~--------------~~~G~iCSGrG~C-------------~Cg~C~C~~~~~sG~~CE~c--pt 624 (783)
T KOG1226|consen 580 N----C--PLSTDTCE--------------SSDGQICSGRGTC-------------ECGRCKCTDPPYSGEFCEKC--PT 624 (783)
T ss_pred C----C--CCCCcccc--------------CCCCceeCCCcee-------------eCCceEcCCCCcCcchhhcC--CC
Confidence 2 2 22222222 2224567888888 47999998344999999975 68
Q ss_pred cCCCCCCCeeee-CCeeecCCCcccCCCCCCc
Q 008406 280 CVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPS 310 (567)
Q Consensus 280 C~~~Cs~~G~C~-~G~C~C~~G~~G~~C~~~~ 310 (567)
|+..|..+..|+ -.. +..|+.+..|.+.-
T Consensus 625 c~~~C~~~~~CveC~~--~~~g~~~~~C~~~C 654 (783)
T KOG1226|consen 625 CPDPCAENKSCVECQA--FETGPVGDTCVEEC 654 (783)
T ss_pred CCCcccccccchhhcc--cccccccchHHHHh
Confidence 888999998886 222 34568888887643
No 7
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.84 E-value=1.5e-08 Score=113.75 Aligned_cols=184 Identities=24% Similarity=0.533 Sum_probs=103.4
Q ss_pred CCceeecCCCCCccccccCccCCCCC-CCCCCCCC-EEecCCCeEE-eCCCCcCCCCCccccccCCCCCCCCCCCC---C
Q 008406 98 IGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQG-VCNHELGQCR-CFHGFRGKGCSERIHFQCNFPKTPELPYG---R 171 (567)
Q Consensus 98 ~G~~~~~C~~g~~g~~~~~~~~~~~C-~~~Cs~~G-~C~~~~G~C~-C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g---~ 171 (567)
.|+-+.+|.+|+.|. .+| +..|++|. +|+..+|.|+ |..-.+|..|+. |..+-..++..| .
T Consensus 839 ygrqCnqCqpG~WgF--------PeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~Cdr-----Cl~GyyGdP~lg~g~~ 905 (1758)
T KOG0994|consen 839 YGRQCNQCQPGYWGF--------PECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDR-----CLDGYYGDPRLGSGIG 905 (1758)
T ss_pred chhhccccCCCccCC--------CcCccccccCcccccCccccccccccccccccchhh-----hhccccCCcccCCCCC
Confidence 344455566776655 678 77899875 7999999996 888888888876 333222211111 2
Q ss_pred cccccCC----------CcccCC----CCeEecCCCcccCCCCCCCC-----------C---CCccC-----CCCCC---
Q 008406 172 WVVSICP----------THCDTT----RAMCFCGEGTKYPNRPVAEA-----------C---GFQVN-----LPSQP--- 215 (567)
Q Consensus 172 ~~~~~C~----------g~C~~~----~g~C~C~~G~~G~~C~~~~~-----------C---~~~~~-----~~~c~--- 215 (567)
|...+|| ..|.-. .=.|.|.+||.|.+|+.... | ....+ ...|.
T Consensus 906 CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~T 985 (1758)
T KOG0994|consen 906 CRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVAT 985 (1758)
T ss_pred CCCCCCCCCCccchhccccccccccccceeeecccCccccchhhhcccccCCcccCCccccccccCCcCccCCCccchhh
Confidence 3333443 123322 22799999999999854211 1 00000 00000
Q ss_pred -----------CC---CCCCCCCCC----CCCCcc----CCCCCCCcccCCCcccccccccccccccccCCCCCCCcccc
Q 008406 216 -----------GA---PKSTDWAKA----DLDNIF----TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCE 273 (567)
Q Consensus 216 -----------~~---~c~~gw~g~----~c~~~~----~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce 273 (567)
+. .|..||+|. +|..+. +++ +.+.|.. .+|+|.|. +...|..|+
T Consensus 986 G~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn--~~~~CDr-----------~tGQCpCl-pNv~G~~CD 1051 (1758)
T KOG0994|consen 986 GACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRCVCNFLGTN--STCHCDR-----------FTGQCPCL-PNVQGVRCD 1051 (1758)
T ss_pred chhhhhhhcccccchhhccccchhHHHHhhhhhheccccccC--Ccccccc-----------ccCcCCCC-ccccccccc
Confidence 00 134555552 121100 111 1122221 47999998 999999998
Q ss_pred cccCC--------ccC-CCC--CCCeeee--CCeeecCCCcccCCCCC
Q 008406 274 VPVSS--------TCV-NQC--SGHGHCR--GGFCQCDSGWYGVDCSI 308 (567)
Q Consensus 274 ~~~~~--------~C~-~~C--s~~G~C~--~G~C~C~~G~~G~~C~~ 308 (567)
...+. .|. -+| .+.-+|+ +|+|+|+|||-|..|++
T Consensus 1052 qCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftGQCqCkpGfGGR~C~q 1099 (1758)
T KOG0994|consen 1052 QCAENHWNLASGEGCEPCNCDPIGGPQCNEFTGQCQCKPGFGGRTCSQ 1099 (1758)
T ss_pred ccccchhccccCCCCCccCCCccCCccccccccceeccCCCCCcchhH
Confidence 54211 111 123 2445787 89999999999999986
No 8
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.76 E-value=1.1e-08 Score=114.81 Aligned_cols=169 Identities=26% Similarity=0.588 Sum_probs=103.1
Q ss_pred ceeecCCCCCccccccC--------ccCCCCC-CCCCCCC------CEEecCCCeEE-eCCCCcCCCCCccccccCCCCC
Q 008406 100 RWLSGCDSVAKEVDLVE--------MIGGKSC-KSDCSGQ------GVCNHELGQCR-CFHGFRGKGCSERIHFQCNFPK 163 (567)
Q Consensus 100 ~~~~~C~~g~~g~~~~~--------~~~~~~C-~~~Cs~~------G~C~~~~G~C~-C~~G~~G~~Ce~~~~~~C~~~~ 163 (567)
+..+.|.+||.|.-|+. +-.+-.| +..|+|+ |.|+..+|.|. |-.-..|+.|+. |.++
T Consensus 933 ~ivC~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~-----Ck~G- 1006 (1758)
T KOG0994|consen 933 QIVCHCQEGYSGSRCEICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEH-----CKDG- 1006 (1758)
T ss_pred ceeeecccCccccchhhhcccccCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccchhh-----cccc-
Confidence 44555777777776653 1123456 5567775 78888888773 444445555543 2211
Q ss_pred CCCCCCCC-----cccccC-------CCcccCCCCeEecCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCC---CCCCC
Q 008406 164 TPELPYGR-----WVVSIC-------PTHCDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDW---AKADL 228 (567)
Q Consensus 164 ~~~~~~g~-----~~~~~C-------~g~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~c~~~~c~~gw---~g~~c 228 (567)
.||. |-...| ..+||..+|+|.|.+.-.|.+|+. |.. ..| .|..|
T Consensus 1007 ----f~GdA~~q~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~~CDq---CA~-------------N~w~laSG~GC 1066 (1758)
T KOG0994|consen 1007 ----FYGDALRQNCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGVRCDQ---CAE-------------NHWNLASGEGC 1066 (1758)
T ss_pred ----chhHHHHhhhhhheccccccCCccccccccCcCCCCcccccccccc---ccc-------------chhccccCCCC
Confidence 1110 000111 157888899999999999998853 311 122 23334
Q ss_pred CCccCCCCCCC--cccCCCcccccccccccccccccCCCCCCCccccccc-------CCccC-CCCCCCee----ee--C
Q 008406 229 DNIFTTNGSKP--GWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV-------SSTCV-NQCSGHGH----CR--G 292 (567)
Q Consensus 229 ~~~~~~~C~~~--G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~-------~~~C~-~~Cs~~G~----C~--~ 292 (567)
+ +.+|... -.|+. .+|+|+|+ +||.|..|++.. ...|. -.|..+|. |. +
T Consensus 1067 e---~C~Cd~~~~pqCN~-----------ftGQCqCk-pGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCdr~t 1131 (1758)
T KOG0994|consen 1067 E---PCNCDPIGGPQCNE-----------FTGQCQCK-PGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCDRAT 1131 (1758)
T ss_pred C---ccCCCccCCccccc-----------cccceecc-CCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCccccC
Confidence 4 2333332 24654 58999999 999999998642 11232 24666654 75 8
Q ss_pred CeeecCCCcccCCCCCC
Q 008406 293 GFCQCDSGWYGVDCSIP 309 (567)
Q Consensus 293 G~C~C~~G~~G~~C~~~ 309 (567)
|.|.|.+|..|..|..-
T Consensus 1132 G~C~C~~Gv~G~rCdqC 1148 (1758)
T KOG0994|consen 1132 GRCVCRPGVGGPRCDQC 1148 (1758)
T ss_pred CceeecCCCCCcchhhh
Confidence 99999999999999873
No 9
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.76 E-value=1e-08 Score=120.74 Aligned_cols=106 Identities=27% Similarity=0.675 Sum_probs=81.6
Q ss_pred CCC-CCCCCCCCEEecCCC---eEEeCCCCcCCCCCccccccCCCCCCCCCCCCCcccccCCCcccCCCCeEecCCCccc
Q 008406 121 KSC-KSDCSGQGVCNHELG---QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKY 196 (567)
Q Consensus 121 ~~C-~~~Cs~~G~C~~~~G---~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~~~g~C~C~~G~~G 196 (567)
..| .++|.++|+|+...+ .|.|++-|.|..||..+ .+|.
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~-epC~------------------------------------ 3907 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDL-EPCA------------------------------------ 3907 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCccccccc-cccc------------------------------------
Confidence 567 678999999986543 79999999999888741 2222
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcccCCCcccccccccccccccccCCCCCCCccccccc
Q 008406 197 PNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV 276 (567)
Q Consensus 197 ~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~ 276 (567)
.++|..+|+|....+ .+.|.|+ .||+|..||..-
T Consensus 3908 ------------------------------------snPC~~GgtCip~~n---------~f~CnC~-~gyTG~~Ce~~G 3941 (4289)
T KOG1219|consen 3908 ------------------------------------SNPCLTGGTCIPFYN---------GFLCNCP-NGYTGKRCEARG 3941 (4289)
T ss_pred ------------------------------------CCCCCCCCEEEecCC---------CeeEeCC-CCccCceeeccc
Confidence 345667788876543 5799999 999999999873
Q ss_pred CCccC-CCCCCCeeee--CC--eeecCCCcccCCCCCC
Q 008406 277 SSTCV-NQCSGHGHCR--GG--FCQCDSGWYGVDCSIP 309 (567)
Q Consensus 277 ~~~C~-~~Cs~~G~C~--~G--~C~C~~G~~G~~C~~~ 309 (567)
...|. |.|.++|.|+ .| .|.|.+||.|..|.-.
T Consensus 3942 i~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~~ 3979 (4289)
T KOG1219|consen 3942 ISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCAE 3979 (4289)
T ss_pred ccccccccccCCceeeccCCceEeccChhHhcccCccc
Confidence 34566 8999999997 45 8999999999999543
No 10
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.37 E-value=5.1e-07 Score=107.02 Aligned_cols=104 Identities=21% Similarity=0.393 Sum_probs=81.8
Q ss_pred CCCCceeeeCCccccc--CCceeecCCCCCccccccCccCCCCC-CCCCCCCCEEecCCC--eEEeCCCCcCCCCCcccc
Q 008406 82 DLHNAVVYRNAPWKAE--IGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQGVCNHELG--QCRCFHGFRGKGCSERIH 156 (567)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~G~~~~~C~~g~~g~~~~~~~~~~~C-~~~Cs~~G~C~~~~G--~C~C~~G~~G~~Ce~~~~ 156 (567)
+.|....|..++.+.. .|.|.|.|++.|.|..|+..+ ..| +++|..+|+|+...+ .|.|+.||+|..||..-.
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~--epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi 3942 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDL--EPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGI 3942 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCccccccc--ccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecccc
Confidence 4555555655543333 689999999999999999666 899 999999999986544 899999999999998633
Q ss_pred ccCCCCCCCCCCCCCcccccCC--CcccCCCC--eEecCCCcccCCCC
Q 008406 157 FQCNFPKTPELPYGRWVVSICP--THCDTTRA--MCFCGEGTKYPNRP 200 (567)
Q Consensus 157 ~~C~~~~~~~~~~g~~~~~~C~--g~C~~~~g--~C~C~~G~~G~~C~ 200 (567)
.+|. ...|. |.|.+..| .|.|.+|+.|..|+
T Consensus 3943 ~eCs-------------~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3943 SECS-------------KNVCGTGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred cccc-------------cccccCCceeeccCCceEeccChhHhcccCc
Confidence 3443 34564 78888888 99999999998884
No 11
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.36 E-value=4e-07 Score=104.26 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=61.7
Q ss_pred CcCCCCCcccc--ccccCCCCCCCceeeeCCcccccCCceeecCCCCCccccccCccCCCCC-CCCCCCCCEEecCCC--
Q 008406 64 RVWENSPPQLN--LDHRFPADLHNAVVYRNAPWKAEIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQGVCNHELG-- 138 (567)
Q Consensus 64 ~c~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~C~~g~~g~~~~~~~~~~~C-~~~Cs~~G~C~~~~G-- 138 (567)
+|.+.-.|++- |....|.-+...+..|-- ..++.+.|.|++|++|.+|+..+ +.| ..+|.+||.|..-.|
T Consensus 1186 PCenymkCvsvlrFdssapf~~s~s~lfRpi---~pvnglrCrCPpGFTgd~CeTei--DlCYs~pC~nng~C~srEggY 1260 (2531)
T KOG4289|consen 1186 PCENYMKCVSVLRFDSSAPFLASDSVLFRPI---HPVNGLRCRCPPGFTGDYCETEI--DLCYSGPCGNNGRCRSREGGY 1260 (2531)
T ss_pred hhHHHHhhhhheeecccCccccccceeeeec---cccCceeEeCCCCCCcccccchh--HhhhcCCCCCCCceEEecCce
Confidence 35555555543 222223333344444321 24789999999999999999877 899 889999999976444
Q ss_pred eEEeCCCCcCCCCCcc
Q 008406 139 QCRCFHGFRGKGCSER 154 (567)
Q Consensus 139 ~C~C~~G~~G~~Ce~~ 154 (567)
+|.|.+||+|.+||..
T Consensus 1261 tCeCrpg~tGehCEvs 1276 (2531)
T KOG4289|consen 1261 TCECRPGFTGEHCEVS 1276 (2531)
T ss_pred eEEecCCccccceeee
Confidence 8999999999999974
No 12
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.27 E-value=2e-06 Score=98.83 Aligned_cols=67 Identities=31% Similarity=0.795 Sum_probs=52.1
Q ss_pred CCC-CCCCCCCCEEecCCC----eEEeCCCCcCCCCCccccccCCCCCCCCCCCCCcccccC-----C------CcccCC
Q 008406 121 KSC-KSDCSGQGVCNHELG----QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSIC-----P------THCDTT 184 (567)
Q Consensus 121 ~~C-~~~Cs~~G~C~~~~G----~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C-----~------g~C~~~ 184 (567)
+.| .++|.+.|+|....| +|+|++||+|+.||.+...+|+. |-|....| . ..|+..
T Consensus 1717 ~vC~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPr--------GWWG~P~CgpC~CavsKgfdp~CnKt 1788 (2531)
T KOG4289|consen 1717 DVCSLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRADQPCPR--------GWWGFPTCGPCNCAVSKGFDPDCNKT 1788 (2531)
T ss_pred chhcccccccCceeecCCCCCceeEECCCcccCcchhhhccCCCCC--------cccCCCCccCccccccCCCCCCcccc
Confidence 667 678999999987665 79999999999999988788874 33333333 2 468888
Q ss_pred CCeEecCCCcc
Q 008406 185 RAMCFCGEGTK 195 (567)
Q Consensus 185 ~g~C~C~~G~~ 195 (567)
+|+|.|++...
T Consensus 1789 ~G~CqCKe~hy 1799 (2531)
T KOG4289|consen 1789 NGQCQCKENHY 1799 (2531)
T ss_pred Ccceeeccccc
Confidence 99999988764
No 13
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.98 E-value=7.5e-06 Score=54.71 Aligned_cols=27 Identities=41% Similarity=1.058 Sum_probs=24.6
Q ss_pred CCCCCCCEEecCCCeEEeCCCCcCCCC
Q 008406 125 SDCSGQGVCNHELGQCRCFHGFRGKGC 151 (567)
Q Consensus 125 ~~Cs~~G~C~~~~G~C~C~~G~~G~~C 151 (567)
..|++||+|+...|+|.|.+||+|++|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 359999999987799999999999987
No 14
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=97.78 E-value=0.0002 Score=87.42 Aligned_cols=179 Identities=21% Similarity=0.434 Sum_probs=108.1
Q ss_pred cCCceeecCCCCCccccccCccCCCCC-CCCCCCCCEEec----CCCeEE-eCCCCcCCCCCccccccCCCC-----CCC
Q 008406 97 EIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQGVCNH----ELGQCR-CFHGFRGKGCSERIHFQCNFP-----KTP 165 (567)
Q Consensus 97 ~~G~~~~~C~~g~~g~~~~~~~~~~~C-~~~Cs~~G~C~~----~~G~C~-C~~G~~G~~Ce~~~~~~C~~~-----~~~ 165 (567)
+.|..+.+|..|+.|..-...- .+| +-.|-+.|.|.. ..+.|. |++||+|..|+. |..+ ...
T Consensus 753 t~G~~C~~C~~GfYg~~~~~~~--~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~-----c~dgyfg~p~~~ 825 (1705)
T KOG1836|consen 753 TFGGQCAQCVDGFYGLPDLGTS--GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEE-----CADGYFGNPLGH 825 (1705)
T ss_pred CCCCchhhhcCCCCCccccCCC--CCCccCCCCCChhhcCcCcccceecCCCCCCCccccccc-----CCCccccCCCCC
Confidence 4688888899999888765433 237 667877777743 346899 999999999997 3322 111
Q ss_pred CCCCCCcccccCC--------CcccCCCCeE-ecCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC----C-c
Q 008406 166 ELPYGRWVVSICP--------THCDTTRAMC-FCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLD----N-I 231 (567)
Q Consensus 166 ~~~~g~~~~~~C~--------g~C~~~~g~C-~C~~G~~G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~----~-~ 231 (567)
......|....|. +.|+-..|.| .|.....|..|+.. ..+++|..-. . +
T Consensus 826 ~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c-----------------~~g~~gd~l~~~p~~~c 888 (1705)
T KOG1836|consen 826 DGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLC-----------------KEGYFGDPLAPNPEDKC 888 (1705)
T ss_pred CCCcccCccceeccccCccccccccccccceeeccCCccccccccc-----------------ccCccccccCCCcCCcc
Confidence 1111223333342 6788889999 58888888777432 2233332221 0 0
Q ss_pred cCCCCCCCc------ccCCCcccccccccccccccccCCCCCCCccccccc--------CCccC-CCCCCC----eeee-
Q 008406 232 FTTNGSKPG------WCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV--------SSTCV-NQCSGH----GHCR- 291 (567)
Q Consensus 232 ~~~~C~~~G------~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~--------~~~C~-~~Cs~~----G~C~- 291 (567)
....|...| .|+. .+|+|.|. +.-.|..|.... ...|. -.|.-. ..|+
T Consensus 889 ~~c~c~p~gs~~~~~~c~~-----------~tGQcec~-~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~ 956 (1705)
T KOG1836|consen 889 FACGCVPAGSELPSLTCNP-----------VTGQCECK-PNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDV 956 (1705)
T ss_pred ccccCccCCcccccccCCC-----------cccceecc-CCCCccccccccccccccCCCCCcccccccccccccccccc
Confidence 011121111 2332 37889988 888888776431 11221 234432 3676
Q ss_pred -CCeeecCCCcccCCCCCCcc
Q 008406 292 -GGFCQCDSGWYGVDCSIPSV 311 (567)
Q Consensus 292 -~G~C~C~~G~~G~~C~~~~~ 311 (567)
+|.|.|++|-+|.+|.+...
T Consensus 957 ~tGqc~c~~gVtgqrc~qc~~ 977 (1705)
T KOG1836|consen 957 GTGQCYCRPGVTGQRCDQCET 977 (1705)
T ss_pred cCCceeeecCccccccCcccc
Confidence 88999999999999987543
No 15
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.75 E-value=2.6e-05 Score=52.12 Aligned_cols=25 Identities=64% Similarity=1.379 Sum_probs=23.1
Q ss_pred CCCCCCeeee--CCeeecCCCcccCCC
Q 008406 282 NQCSGHGHCR--GGFCQCDSGWYGVDC 306 (567)
Q Consensus 282 ~~Cs~~G~C~--~G~C~C~~G~~G~~C 306 (567)
..|++||+|+ .++|+|.+||+|.+|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 4699999999 799999999999987
No 16
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.69 E-value=0.0004 Score=75.42 Aligned_cols=178 Identities=25% Similarity=0.553 Sum_probs=105.1
Q ss_pred CCceeecCCCCCccccccCccCCCCCC---CCCCCCCEEecCCC--eEEeCCCCcCCCCCcc-ccccCCCC---CCCCCC
Q 008406 98 IGRWLSGCDSVAKEVDLVEMIGGKSCK---SDCSGQGVCNHELG--QCRCFHGFRGKGCSER-IHFQCNFP---KTPELP 168 (567)
Q Consensus 98 ~G~~~~~C~~g~~g~~~~~~~~~~~C~---~~Cs~~G~C~~~~G--~C~C~~G~~G~~Ce~~-~~~~C~~~---~~~~~~ 168 (567)
.+.+.+.|..+|.+..+.... .+|. ..|.+.++|....+ .|.|+.||.|..|+.. .-..|... ......
T Consensus 149 ~~~~~c~C~~g~~~~~~~~~~--~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~ 226 (487)
T KOG1217|consen 149 VGPFRCSCTEGYEGEPCETDL--DECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGA 226 (487)
T ss_pred CCceeeeeCCCcccccccccc--cccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCC
Confidence 358889999999999887554 5772 34999999976555 6999999999999864 00112110 000000
Q ss_pred CC-Ccc--cccCC---CcccCCCC--eEecCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCC-CCCCC
Q 008406 169 YG-RWV--VSICP---THCDTTRA--MCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTT-NGSKP 239 (567)
Q Consensus 169 ~g-~~~--~~~C~---g~C~~~~g--~C~C~~G~~G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~-~C~~~ 239 (567)
.+ .+. ...|. +.|....+ .|.|.+||.+..+ ..| .+.+..... .|.++
T Consensus 227 ~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~---~~~--------------------~~~~~C~~~~~c~~~ 283 (487)
T KOG1217|consen 227 RGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDAC---VTC--------------------VDVDSCALIASCPNG 283 (487)
T ss_pred CCCCcccccccccCCCCcccccCCceeeeCCCCcccccc---cee--------------------eeccccCCCCccCCC
Confidence 00 000 00111 33333322 5666666665432 000 001111121 26777
Q ss_pred cccCCCcccccccccccccccccCCCCCCCccc-ccccCCcc-----CCCCCCCeeee------CCeeecCCCcccCCCC
Q 008406 240 GWCNVDPEEAYALKVQFKEECDCKYDGLLGQFC-EVPVSSTC-----VNQCSGHGHCR------GGFCQCDSGWYGVDCS 307 (567)
Q Consensus 240 G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C-e~~~~~~C-----~~~Cs~~G~C~------~G~C~C~~G~~G~~C~ 307 (567)
+.|..... .+.|.|+ +||+|..| +......| ...|.++++|. ...|.|..||.|..|+
T Consensus 284 ~~C~~~~~---------~~~C~C~-~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~ 353 (487)
T KOG1217|consen 284 GTCVNVPG---------SYRCTCP-PGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCE 353 (487)
T ss_pred CeeecCCC---------cceeeCC-CCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccc
Confidence 88865432 3789999 99999998 22112345 24588888883 2359999999999999
Q ss_pred CCc
Q 008406 308 IPS 310 (567)
Q Consensus 308 ~~~ 310 (567)
...
T Consensus 354 ~~~ 356 (487)
T KOG1217|consen 354 DSN 356 (487)
T ss_pred cCC
Confidence 874
No 17
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=97.66 E-value=0.00044 Score=84.60 Aligned_cols=174 Identities=24% Similarity=0.525 Sum_probs=106.9
Q ss_pred CCceeecCCCCCccccccCccCCCCC-CCCCCCC------CEEecCCCeE-EeCCCCcCCCCCccccccCCCCCCCC---
Q 008406 98 IGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQ------GVCNHELGQC-RCFHGFRGKGCSERIHFQCNFPKTPE--- 166 (567)
Q Consensus 98 ~G~~~~~C~~g~~g~~~~~~~~~~~C-~~~Cs~~------G~C~~~~G~C-~C~~G~~G~~Ce~~~~~~C~~~~~~~--- 166 (567)
+|.-+..|..|+.+..-........| +..|+++ |.|+..+|.| .|...-+|..|+. |..+-...
T Consensus 807 tG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~-----c~~g~~gd~l~ 881 (1705)
T KOG1836|consen 807 TGLRCEECADGYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDL-----CKEGYFGDPLA 881 (1705)
T ss_pred cccccccCCCccccCCCCCCCCcccCccceeccccCccccccccccccceeeccCCcccccccc-----cccCccccccC
Confidence 45555556666655554444223567 6678763 8999999999 7999999999986 33211110
Q ss_pred -CCCCCcccccC--------CCcccCCCCeEecCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCC----CCCCccC
Q 008406 167 -LPYGRWVVSIC--------PTHCDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKA----DLDNIFT 233 (567)
Q Consensus 167 -~~~g~~~~~~C--------~g~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~----~c~~~~~ 233 (567)
.+.+.|....| ...|+..+|+|.|.+.-.|..|.. | ..++++- .|. .
T Consensus 882 ~~p~~~c~~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~---c--------------~~g~fnl~s~~gC~---~ 941 (1705)
T KOG1836|consen 882 PNPEDKCFACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLY---C--------------FKGFFNLNSGVGCE---P 941 (1705)
T ss_pred CCcCCccccccCccCCcccccccCCCcccceeccCCCCcccccc---c--------------cccccccCCCCCcc---c
Confidence 11222222222 145889999999999988877632 2 1222221 222 2
Q ss_pred CCCCCCc----ccCCCcccccccccccccccccCCCCCCCccccccc-------CCccC-CCCCCCe----eee--CCee
Q 008406 234 TNGSKPG----WCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV-------SSTCV-NQCSGHG----HCR--GGFC 295 (567)
Q Consensus 234 ~~C~~~G----~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~-------~~~C~-~~Cs~~G----~C~--~G~C 295 (567)
.+|...| .|.. .+|+|.|. +|.+|..|+... ...|- -.|...| .|+ +|+|
T Consensus 942 c~c~~~gs~~~~c~~-----------~tGqc~c~-~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c 1009 (1705)
T KOG1836|consen 942 CNCDPTGSESSDCDV-----------GTGQCYCR-PGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQC 1009 (1705)
T ss_pred ccccccccccccccc-----------cCCceeee-cCccccccCccccCcccccccCCcceecccCCcccceecccCCee
Confidence 3344444 3432 37899998 999999998531 11111 1355566 586 7999
Q ss_pred ecCCCcccCCCCC
Q 008406 296 QCDSGWYGVDCSI 308 (567)
Q Consensus 296 ~C~~G~~G~~C~~ 308 (567)
.|++|+.|..|..
T Consensus 1010 ~c~~~~~g~~c~~ 1022 (1705)
T KOG1836|consen 1010 PCRPGFEGRRCDQ 1022 (1705)
T ss_pred eecCCCCCccccc
Confidence 9999999977765
No 18
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.58 E-value=0.00077 Score=73.19 Aligned_cols=177 Identities=20% Similarity=0.457 Sum_probs=112.1
Q ss_pred cCCceeecCCCCCccccccCccCCCCC-CC--CCCCCCEEecC-----CCeEEeCCCCcCCCCCccccccCCCCCCCCCC
Q 008406 97 EIGRWLSGCDSVAKEVDLVEMIGGKSC-KS--DCSGQGVCNHE-----LGQCRCFHGFRGKGCSERIHFQCNFPKTPELP 168 (567)
Q Consensus 97 ~~G~~~~~C~~g~~g~~~~~~~~~~~C-~~--~Cs~~G~C~~~-----~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~ 168 (567)
..+.+.+.|..|+.+..+.... .| .. .+..++.|... ...|.|..||.|..|+.. ...|.....
T Consensus 106 ~~~~~~c~c~~g~~~~~~~~~~---~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~-~~~C~~~~~---- 177 (487)
T KOG1217|consen 106 CVGSYECTCPPGYQGTPCEGEC---ECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETD-LDECIQYSS---- 177 (487)
T ss_pred CCCCceeeCCCccccCcCCcce---eecCCCCCeeCchhhcCCCCCCCceeeeeCCCccccccccc-ccccccCCC----
Confidence 3567777799999998777431 35 22 24567777643 237999999999999874 234553221
Q ss_pred CCCcccccCC--CcccCCCC--eEecCCCcccCCCCCC---CCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCC-c
Q 008406 169 YGRWVVSICP--THCDTTRA--MCFCGEGTKYPNRPVA---EACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKP-G 240 (567)
Q Consensus 169 ~g~~~~~~C~--g~C~~~~g--~C~C~~G~~G~~C~~~---~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~-G 240 (567)
.|. +.|....+ .|.|.++|.+..|... ..|... ....+..++.+..|+.. ...|... +
T Consensus 178 -------~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~------~~~~~~~g~~~~~c~~~-~~~~~~~~~ 243 (487)
T KOG1217|consen 178 -------PCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDS------VACSCPPGARGPECEVS-IVECASGDG 243 (487)
T ss_pred -------CcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecc------eeccCCCCCCCCCcccc-cccccCCCC
Confidence 233 45665544 7999999998887543 112110 11223455556556522 1223322 7
Q ss_pred ccCCCcccccccccccccccccCCCCCCCccc--ccccCCccCC--CCCCCeeee----CCeeecCCCcccCCC
Q 008406 241 WCNVDPEEAYALKVQFKEECDCKYDGLLGQFC--EVPVSSTCVN--QCSGHGHCR----GGFCQCDSGWYGVDC 306 (567)
Q Consensus 241 ~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C--e~~~~~~C~~--~Cs~~G~C~----~G~C~C~~G~~G~~C 306 (567)
.|..... .++|.|+ +||++..+ ... ...|.. .|.++++|. ...|.|++||.|..|
T Consensus 244 ~c~~~~~---------~~~C~~~-~g~~~~~~~~~~~-~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 244 TCVNTVG---------SYTCRCP-EGYTGDACVTCVD-VDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred cccccCC---------ceeeeCC-CCccccccceeee-ccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 7765432 4699998 99999984 111 224542 389999997 268999999999999
No 19
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0002 Score=70.17 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=33.6
Q ss_pred CCCCCccccccCccCCCCCCCCCCCCCEEec-----CCCeEEeCCCCcCCCCCc
Q 008406 105 CDSVAKEVDLVEMIGGKSCKSDCSGQGVCNH-----ELGQCRCFHGFRGKGCSE 153 (567)
Q Consensus 105 C~~g~~g~~~~~~~~~~~C~~~Cs~~G~C~~-----~~G~C~C~~G~~G~~Ce~ 153 (567)
|+.|..|..|-.--+..+ .+|+++|.|.. ..|.|.|.+||+|+.|..
T Consensus 132 Cp~gtyGpdCl~Cpggse--r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSE--RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred cCCCCcCCccccCCCCCc--CCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence 788888887652111111 35999999964 246899999999999975
No 20
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=97.29 E-value=0.0021 Score=67.64 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=40.6
Q ss_pred cccccccCCCCCCCccccccc-------C--Ccc-------CCCCCCCeeeeCCeeecCCCcccCCCCCCccc
Q 008406 256 FKEECDCKYDGLLGQFCEVPV-------S--STC-------VNQCSGHGHCRGGFCQCDSGWYGVDCSIPSVM 312 (567)
Q Consensus 256 ~~g~C~C~~~G~~G~~Ce~~~-------~--~~C-------~~~Cs~~G~C~~G~C~C~~G~~G~~C~~~~~~ 312 (567)
.+|+|.|+ +|-+|..|+... . ..| +..++++++=.+..+.|+.++.|..+++++.-
T Consensus 412 ~tGqCpCk-eGvtG~tCnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve~qd~~s~Ck~~~~~~r~n~kkfc 483 (592)
T KOG3512|consen 412 TTGQCPCK-EGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVEPQDQCSKCKASPGGKRLNQKKFC 483 (592)
T ss_pred cCCcccCC-CCCcccccccccchhhcccCCCcCceecCCCCccccCCCCcchhccccCCCCCcceeccccccC
Confidence 38999999 999999997432 1 112 12366666633557899999999999998764
No 21
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.12 E-value=0.002 Score=71.77 Aligned_cols=145 Identities=21% Similarity=0.558 Sum_probs=81.8
Q ss_pred CCCCCCCEEecCCC---eEEeCCCCcCC--CCCccccccCCCCCCCCCCCCCcccccCC--CcccCCCC--eEecCCCcc
Q 008406 125 SDCSGQGVCNHELG---QCRCFHGFRGK--GCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRA--MCFCGEGTK 195 (567)
Q Consensus 125 ~~Cs~~G~C~~~~G---~C~C~~G~~G~--~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--g~C~~~~g--~C~C~~G~~ 195 (567)
..|--+..|...+| +|.|..||.|+ .|... .+|.... .+|. ..|.+..| +|.|..||.
T Consensus 700 h~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~--~eca~~~-----------~~CGp~s~Cin~pg~~rceC~~gy~ 766 (1289)
T KOG1214|consen 700 HMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVDE--NECATGF-----------HRCGPNSVCINLPGSYRCECRSGYE 766 (1289)
T ss_pred cccCCCccccCCCCcceEEEEeeccCCCCCCCCCh--hhhccCC-----------CCCCCCceeecCCCceeEEEeecce
Confidence 34666677774444 79999999765 46543 3454321 2454 56777665 788888875
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcccCCCcccccccccccccccccCCCCCCCc--ccc
Q 008406 196 YPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQ--FCE 273 (567)
Q Consensus 196 G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~--~Ce 273 (567)
...= +..|..-.. +. + -..|++- ...|...|.|.... .++ ..+.|.|. +||.|. .|.
T Consensus 767 F~dd--~~tCV~i~~-pa-p---------~n~Ce~g-~h~C~i~g~a~c~~----hGg--s~y~C~CL-PGfsGDG~~c~ 825 (1289)
T KOG1214|consen 767 FADD--RHTCVLITP-PA-P---------ANPCEDG-SHTCAIAGQARCVH----HGG--STYSCACL-PGFSGDGHQCT 825 (1289)
T ss_pred eccC--CcceEEecC-CC-C---------CCccccC-ccccCcCCceEEEe----cCC--ceEEEeec-CCccCCccccc
Confidence 3210 112211000 00 0 0112111 23455555543211 000 26799998 999964 454
Q ss_pred cccCCcc-CCCCCCCeeee----CCeeecCCCcccCC
Q 008406 274 VPVSSTC-VNQCSGHGHCR----GGFCQCDSGWYGVD 305 (567)
Q Consensus 274 ~~~~~~C-~~~Cs~~G~C~----~G~C~C~~G~~G~~ 305 (567)
.- +.| ++.|-...+|. .-.|+|.+||.|+.
T Consensus 826 dv--DeC~psrChp~A~CyntpgsfsC~C~pGy~GDG 860 (1289)
T KOG1214|consen 826 DV--DECSPSRCHPAATCYNTPGSFSCRCQPGYYGDG 860 (1289)
T ss_pred cc--cccCccccCCCceEecCCCcceeecccCccCCC
Confidence 32 344 57899999997 34899999999864
No 22
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.10 E-value=0.0023 Score=71.27 Aligned_cols=159 Identities=20% Similarity=0.370 Sum_probs=92.6
Q ss_pred ceeecCCCCCcccc--ccCccCCCCCCCCCCCCCEEecCCC--eEEeCCCC--cCC--CCCccc----cccCCCCCCCCC
Q 008406 100 RWLSGCDSVAKEVD--LVEMIGGKSCKSDCSGQGVCNHELG--QCRCFHGF--RGK--GCSERI----HFQCNFPKTPEL 167 (567)
Q Consensus 100 ~~~~~C~~g~~g~~--~~~~~~~~~C~~~Cs~~G~C~~~~G--~C~C~~G~--~G~--~Ce~~~----~~~C~~~~~~~~ 167 (567)
+|.+.|..++.|.. |.+.-.-.+|+..|-.+.+|+...| +|+|..|| .|+ .|-... .++|..+.
T Consensus 715 ~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~---- 790 (1289)
T KOG1214|consen 715 DYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGS---- 790 (1289)
T ss_pred ceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCc----
Confidence 56777888877654 3322222445667999999998887 67777665 454 353221 12343321
Q ss_pred CCCCcccccCC--CcccC--CCC---eEecCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCc
Q 008406 168 PYGRWVVSICP--THCDT--TRA---MCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPG 240 (567)
Q Consensus 168 ~~g~~~~~~C~--g~C~~--~~g---~C~C~~G~~G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G 240 (567)
..|. +.|.+ ..| .|.|.+||.|.. ..|. +-+++...-|...+
T Consensus 791 -------h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG----~~c~--------------------dvDeC~psrChp~A 839 (1289)
T KOG1214|consen 791 -------HTCAIAGQARCVHHGGSTYSCACLPGFSGDG----HQCT--------------------DVDECSPSRCHPAA 839 (1289)
T ss_pred -------cccCcCCceEEEecCCceEEEeecCCccCCc----cccc--------------------cccccCccccCCCc
Confidence 2453 44433 333 899999999753 1110 11222356688889
Q ss_pred ccCCCcccccccccccccccccCCCCCCCc--ccccc--cCCcc------CCCCCCCeee---e---CCeeecCCCccc
Q 008406 241 WCNVDPEEAYALKVQFKEECDCKYDGLLGQ--FCEVP--VSSTC------VNQCSGHGHC---R---GGFCQCDSGWYG 303 (567)
Q Consensus 241 ~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~--~Ce~~--~~~~C------~~~Cs~~G~C---~---~G~C~C~~G~~G 303 (567)
.|.++++ ...|+|. +||.|. .|--. ....| +..|.+...| + ...|.|.++-.|
T Consensus 840 ~Cyntpg---------sfsC~C~-pGy~GDGf~CVP~~~~~T~C~~er~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG 908 (1289)
T KOG1214|consen 840 TCYNTPG---------SFSCRCQ-PGYYGDGFQCVPDTSSLTPCEQERFHPLQCHGSTGFCWCVDPDGHEVPGTQTPPG 908 (1289)
T ss_pred eEecCCC---------cceeecc-cCccCCCceecCCCccCCccccccccceeeccccceeEeeCCCcccCCCCCCCCC
Confidence 9988765 6799999 999864 44211 01122 2356555443 2 237888777766
No 23
>smart00051 DSL delta serrate ligand.
Probab=97.05 E-value=0.00055 Score=53.42 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=36.7
Q ss_pred cccccCCCCCCCcccccccCCccCCCCCCCeeee-CCeeecCCCcccCCC
Q 008406 258 EECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCR-GGFCQCDSGWYGVDC 306 (567)
Q Consensus 258 g~C~C~~~G~~G~~Ce~~~~~~C~~~Cs~~G~C~-~G~C~C~~G~~G~~C 306 (567)
.+-.|. ++|.|..|+.. ..+.+.+.+|.+|. .|.|.|.+||+|.+|
T Consensus 17 ~rv~C~-~~~yG~~C~~~--C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCD-ENYYGEGCNKF--CRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCC-CCCcCCccCCE--eCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 355788 99999999753 12235688999997 899999999999987
No 24
>smart00051 DSL delta serrate ligand.
Probab=96.98 E-value=0.0008 Score=52.47 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=37.9
Q ss_pred eeecCCCCCccccccCccCCCCCCCCCCCCCEEecCCCeEEeCCCCcCCCC
Q 008406 101 WLSGCDSVAKEVDLVEMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGC 151 (567)
Q Consensus 101 ~~~~C~~g~~g~~~~~~~~~~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~C 151 (567)
+...|+.+|.|..|...+ .+.+++.+|.+|+. .|.|.|.+||+|+.|
T Consensus 17 ~rv~C~~~~yG~~C~~~C---~~~~d~~~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCDENYYGEGCNKFC---RPRDDFFGHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCCCCCcCCccCCEe---CcCccccCCccCCc-CCCEecCCCCcCCCC
Confidence 445699999999987433 23456899999987 799999999999987
No 25
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.72 E-value=0.0013 Score=44.07 Aligned_cols=27 Identities=33% Similarity=0.832 Sum_probs=22.6
Q ss_pred CCCCCCCCEEecCC-C--eEEeCCCCcCCC
Q 008406 124 KSDCSGQGVCNHEL-G--QCRCFHGFRGKG 150 (567)
Q Consensus 124 ~~~Cs~~G~C~~~~-G--~C~C~~G~~G~~ 150 (567)
+++|.++|+|.... + .|.|++||+|+.
T Consensus 3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 3 SNPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 56799999998655 3 799999999974
No 26
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.16 E-value=0.18 Score=51.95 Aligned_cols=153 Identities=20% Similarity=0.358 Sum_probs=79.5
Q ss_pred ecCCCeEEeCCCCcCCCCCccccccCCCCCCCCCCCCCcccccCC--CcccCCCCeEecCCCcccCCCCCCCCCCCc---
Q 008406 134 NHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRAMCFCGEGTKYPNRPVAEACGFQ--- 208 (567)
Q Consensus 134 ~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--g~C~~~~g~C~C~~G~~G~~C~~~~~C~~~--- 208 (567)
....+.|.+..+|.|..|+...........+. .. ..|. ..++..++.|. ..+|.|..|.....|...
T Consensus 45 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~----~~---~~c~~~~~~~~~~~~~~-~~~~~g~~C~~~~~~~~~c~~ 116 (316)
T KOG1218|consen 45 EVNSGECGLGYGFVGSVCRIECVCGNAGGGCS----QP---CRCKNGGTCVSSTGYCH-LNGYEGPQCESPCPCGDGCAE 116 (316)
T ss_pred cCCceeEecccccCCCccccccccCCCCCccc----Cc---cccCCCCcccCCCCccc-CCCCCcccccCCCCcCCcccc
Confidence 44578999999999999887532211111000 00 0111 22233334444 678888888665554332
Q ss_pred -cCCCCCCCCCCCCCCCCCCCCC--ccCCCCCCCcccCCCcccccccccccccccccCCCCCCCcccccccCCccC--CC
Q 008406 209 -VNLPSQPGAPKSTDWAKADLDN--IFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCV--NQ 283 (567)
Q Consensus 209 -~~~~~c~~~~c~~gw~g~~c~~--~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~Ce~~~~~~C~--~~ 283 (567)
.+......+.+..+|.+..|.. .... .|..+. ....+.....+.|.|. +||.|.+|...... |. ..
T Consensus 117 ~~C~~~~~~c~~~~~~~~~~C~~~~~~g~------~C~~~c-~~~~~~~~~~~~c~c~-~g~~g~~~~~~~~~-c~~~~~ 187 (316)
T KOG1218|consen 117 KTCANPRRECRCGGGYIGEQCGEENLVGL------KCQRDC-QCTGGCDCKNGICTCQ-PGFVGVFCVESCSG-CSPLTA 187 (316)
T ss_pred cccCCCccceecCCcCccccccccCCCCC------CccCCC-CCccccCCCCCceecc-CCcccccccccCCC-cCCCcc
Confidence 1111100122334555555543 1111 122111 0011112247899998 99999999875321 44 35
Q ss_pred CCCCeeee--CCeeecCCCccc
Q 008406 284 CSGHGHCR--GGFCQCDSGWYG 303 (567)
Q Consensus 284 Cs~~G~C~--~G~C~C~~G~~G 303 (567)
|.+++.|+ .+.|.+.+++.+
T Consensus 188 ~~~g~~C~~~~~~~~~~~~~~~ 209 (316)
T KOG1218|consen 188 CENGAKCNRSTGSCLCYPGPSG 209 (316)
T ss_pred cCCCCeeeccccccccCCCCcc
Confidence 66777897 677888777765
No 27
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.15 E-value=0.0029 Score=33.37 Aligned_cols=13 Identities=38% Similarity=1.216 Sum_probs=10.9
Q ss_pred eEEeCCCCcCCCC
Q 008406 139 QCRCFHGFRGKGC 151 (567)
Q Consensus 139 ~C~C~~G~~G~~C 151 (567)
+|.|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999987
No 28
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.03 E-value=0.0028 Score=33.38 Aligned_cols=13 Identities=54% Similarity=1.551 Sum_probs=8.7
Q ss_pred eeecCCCcccCCC
Q 008406 294 FCQCDSGWYGVDC 306 (567)
Q Consensus 294 ~C~C~~G~~G~~C 306 (567)
.|+|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4777777777776
No 29
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=95.85 E-value=0.0096 Score=44.15 Aligned_cols=27 Identities=37% Similarity=1.027 Sum_probs=23.0
Q ss_pred CCCCCE----EecCCCeEEeCCCCcCCCCCc
Q 008406 127 CSGQGV----CNHELGQCRCFHGFRGKGCSE 153 (567)
Q Consensus 127 Cs~~G~----C~~~~G~C~C~~G~~G~~Ce~ 153 (567)
|+++|. |+..+|+|.|.+|++|..|++
T Consensus 4 C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 4 CNGHGSLSGQCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred CcCCCCCCccccCCCCEEeCCCcCCCCCCCC
Confidence 555555 988899999999999999985
No 30
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=95.74 E-value=0.0069 Score=44.65 Aligned_cols=27 Identities=37% Similarity=0.973 Sum_probs=22.1
Q ss_pred CCCCC----EEecCCCeEEeCCCCcCCCCCc
Q 008406 127 CSGQG----VCNHELGQCRCFHGFRGKGCSE 153 (567)
Q Consensus 127 Cs~~G----~C~~~~G~C~C~~G~~G~~Ce~ 153 (567)
|+++| +|+..+|+|.|.++|+|..|++
T Consensus 3 C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 3 CNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp STTCCBCCSSEEETCEEESBSTTEESTTS-E
T ss_pred CcCCCCCCCcccCCCCEEeccccccCCcCcC
Confidence 55555 8998899999999999999986
No 31
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.64 E-value=0.0065 Score=40.61 Aligned_cols=24 Identities=38% Similarity=0.942 Sum_probs=20.6
Q ss_pred CCCCCCeeee-----CCeeecCCCcccCC
Q 008406 282 NQCSGHGHCR-----GGFCQCDSGWYGVD 305 (567)
Q Consensus 282 ~~Cs~~G~C~-----~G~C~C~~G~~G~~ 305 (567)
++|.++|+|+ ...|+|++||+|.+
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 5899999997 24899999999974
No 32
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.60 E-value=0.017 Score=39.72 Aligned_cols=32 Identities=31% Similarity=1.060 Sum_probs=26.1
Q ss_pred CCC-C-CCCCCCCEEecCCC--eEEeCCCCc-CCCCC
Q 008406 121 KSC-K-SDCSGQGVCNHELG--QCRCFHGFR-GKGCS 152 (567)
Q Consensus 121 ~~C-~-~~Cs~~G~C~~~~G--~C~C~~G~~-G~~Ce 152 (567)
++| . .+|.++|+|....| .|.|++||. |..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 567 3 57999999987666 699999999 98885
No 33
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.021 Score=56.28 Aligned_cols=41 Identities=39% Similarity=1.047 Sum_probs=35.3
Q ss_pred cCCCCCCCcccccccCCccC----CCCCCCeeee-------CCeeecCCCcccCCCCC
Q 008406 262 CKYDGLLGQFCEVPVSSTCV----NQCSGHGHCR-------GGFCQCDSGWYGVDCSI 308 (567)
Q Consensus 262 C~~~G~~G~~Ce~~~~~~C~----~~Cs~~G~C~-------~G~C~C~~G~~G~~C~~ 308 (567)
|+ +|-.|++|. .|+ .+|+++|.|. +|.|.|.+||.|..|..
T Consensus 132 Cp-~gtyGpdCl-----~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 132 CP-DGTYGPDCL-----QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred cC-CCCcCCccc-----cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence 66 899999997 565 4799999996 57999999999999975
No 34
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.75 E-value=0.043 Score=37.15 Aligned_cols=32 Identities=31% Similarity=1.049 Sum_probs=25.6
Q ss_pred CCCC--CCCCCCCEEecCCC--eEEeCCCCcCCCCC
Q 008406 121 KSCK--SDCSGQGVCNHELG--QCRCFHGFRGKGCS 152 (567)
Q Consensus 121 ~~C~--~~Cs~~G~C~~~~G--~C~C~~G~~G~~Ce 152 (567)
++|. ..|.++|.|....+ .|.|..||.|..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 4563 57988999986555 69999999998875
No 35
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=94.54 E-value=0.042 Score=39.97 Aligned_cols=23 Identities=35% Similarity=1.012 Sum_probs=20.7
Q ss_pred CEEecCCCeEEeCCCCcCCCCCc
Q 008406 131 GVCNHELGQCRCFHGFRGKGCSE 153 (567)
Q Consensus 131 G~C~~~~G~C~C~~G~~G~~Ce~ 153 (567)
..|+..+|+|.|++|++|..|+.
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 11 GTCDPDTGQCECKPNVTGRRCDR 33 (46)
T ss_pred CcccCCCCEEECCCCCCCCCCCc
Confidence 57888789999999999999985
No 36
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=94.23 E-value=0.016 Score=45.27 Aligned_cols=46 Identities=28% Similarity=0.727 Sum_probs=25.5
Q ss_pred cccccccCCCCCCCcccccccCCccCC--CCCCCeeee-CCeeecCCCcccCCC
Q 008406 256 FKEECDCKYDGLLGQFCEVPVSSTCVN--QCSGHGHCR-GGFCQCDSGWYGVDC 306 (567)
Q Consensus 256 ~~g~C~C~~~G~~G~~Ce~~~~~~C~~--~Cs~~G~C~-~G~C~C~~G~~G~~C 306 (567)
...+-.|. +.|.|..|+. .|.+ .-.+|-+|. +|.=.|.+||+|..|
T Consensus 15 ~~~rv~C~-~nyyG~~C~~----~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 15 YRIRVVCD-ENYYGPNCSK----FCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp ---------TTEETTTT-E----E---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred EEEEEECC-CCCCCccccC----CcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence 35577888 9999999986 4643 245677887 889999999999988
No 37
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=93.81 E-value=0.43 Score=50.80 Aligned_cols=98 Identities=21% Similarity=0.438 Sum_probs=55.1
Q ss_pred CCceeecCCCCCccccccC--ccCCCCC-CCCCCCCCE-Ee------cC-----CCeEE-eCCCCcCCCCCccccccCCC
Q 008406 98 IGRWLSGCDSVAKEVDLVE--MIGGKSC-KSDCSGQGV-CN------HE-----LGQCR-CFHGFRGKGCSERIHFQCNF 161 (567)
Q Consensus 98 ~G~~~~~C~~g~~g~~~~~--~~~~~~C-~~~Cs~~G~-C~------~~-----~G~C~-C~~G~~G~~Ce~~~~~~C~~ 161 (567)
.|.=+..|.+-+..-+++. ....++| .+.|++|+. |. .. -|+|. |.....|..|.- |..
T Consensus 304 aGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChy-----Cre 378 (592)
T KOG3512|consen 304 AGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHY-----CRE 378 (592)
T ss_pred CCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCccccc-----ccC
Confidence 3444445544444444432 2345788 777887754 31 11 23664 888888888874 221
Q ss_pred C-----CCCCCCCCCcccccCC------CcccCCCCeEecCCCcccCCCC
Q 008406 162 P-----KTPELPYGRWVVSICP------THCDTTRAMCFCGEGTKYPNRP 200 (567)
Q Consensus 162 ~-----~~~~~~~g~~~~~~C~------g~C~~~~g~C~C~~G~~G~~C~ 200 (567)
+ +.+-.....|....|. .+|+..+|+|.|.+|-+|..|.
T Consensus 379 GyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCn 428 (592)
T KOG3512|consen 379 GYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCN 428 (592)
T ss_pred ccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccc
Confidence 1 1110001122233342 5788889999999999998874
No 38
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=93.56 E-value=0.65 Score=47.78 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=12.9
Q ss_pred CCeeecCCCcccCCCCCCcc
Q 008406 292 GGFCQCDSGWYGVDCSIPSV 311 (567)
Q Consensus 292 ~G~C~C~~G~~G~~C~~~~~ 311 (567)
.+.|.|.++|.+..|.....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (316)
T KOG1218|consen 281 KGSCRCSPGAALATCQKICF 300 (316)
T ss_pred cccccCCCcccccccccccC
Confidence 45677777777777665543
No 39
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.45 E-value=0.1 Score=34.63 Aligned_cols=28 Identities=36% Similarity=0.986 Sum_probs=22.5
Q ss_pred CCCCCCCEEecCCC--eEEeCCCCcCC-CCC
Q 008406 125 SDCSGQGVCNHELG--QCRCFHGFRGK-GCS 152 (567)
Q Consensus 125 ~~Cs~~G~C~~~~G--~C~C~~G~~G~-~Ce 152 (567)
..|.+++.|....+ .|.|+.||.|. .|+
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 56888999986544 89999999998 663
No 40
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.16 E-value=0.13 Score=34.52 Aligned_cols=27 Identities=37% Similarity=0.947 Sum_probs=21.2
Q ss_pred CCCCCCCEEecCCC--eEEeCCCCcC-CCCC
Q 008406 125 SDCSGQGVCNHELG--QCRCFHGFRG-KGCS 152 (567)
Q Consensus 125 ~~Cs~~G~C~~~~G--~C~C~~G~~G-~~Ce 152 (567)
..|.++ +|....+ +|.|+.||.| ..|+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 468877 9986544 8999999999 7664
No 41
>PHA02887 EGF-like protein; Provisional
Probab=91.94 E-value=0.16 Score=43.98 Aligned_cols=28 Identities=32% Similarity=0.778 Sum_probs=22.6
Q ss_pred CCCCCCEEecCCC----eEEeCCCCcCCCCCcc
Q 008406 126 DCSGQGVCNHELG----QCRCFHGFRGKGCSER 154 (567)
Q Consensus 126 ~Cs~~G~C~~~~G----~C~C~~G~~G~~Ce~~ 154 (567)
-|- ||+|..... .|.|+.||+|.+|+..
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 377 789965433 7999999999999974
No 42
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=91.34 E-value=0.24 Score=33.84 Aligned_cols=26 Identities=35% Similarity=0.961 Sum_probs=21.4
Q ss_pred CCCCCCeeee----CCeeecCCCcc-cCCCC
Q 008406 282 NQCSGHGHCR----GGFCQCDSGWY-GVDCS 307 (567)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~-G~~C~ 307 (567)
.+|.++|+|+ ...|.|.+||. |..|+
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 4688888997 23799999999 98885
No 43
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=90.95 E-value=0.27 Score=33.07 Aligned_cols=26 Identities=35% Similarity=0.942 Sum_probs=21.1
Q ss_pred CCCCCCeeee----CCeeecCCCcccCCCC
Q 008406 282 NQCSGHGHCR----GGFCQCDSGWYGVDCS 307 (567)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~G~~C~ 307 (567)
.+|.+++.|. ...|.|.+||.|..|+
T Consensus 9 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 9 NPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 3688888997 2379999999998885
No 44
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=90.65 E-value=0.2 Score=36.99 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=17.3
Q ss_pred eee--CCeeecCCCcccCCCCC
Q 008406 289 HCR--GGFCQCDSGWYGVDCSI 308 (567)
Q Consensus 289 ~C~--~G~C~C~~G~~G~~C~~ 308 (567)
.|+ +|+|.|++||+|.+|++
T Consensus 13 ~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 13 QCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred cccCCCCEEeCCCcCCCCCCCC
Confidence 364 78999999999999985
No 45
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=90.36 E-value=0.3 Score=32.28 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=21.0
Q ss_pred CCCCCCeeee----CCeeecCCCcccC-CCC
Q 008406 282 NQCSGHGHCR----GGFCQCDSGWYGV-DCS 307 (567)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~G~-~C~ 307 (567)
..|.+++.|+ ...|.|+.||.|. .|+
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 5688888897 3589999999998 663
No 46
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=89.89 E-value=0.088 Score=41.07 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=25.4
Q ss_pred eeecCCCCCccccccCccCCCCC-CC-CCCCCCEEecCCCeEEeCCCCcCCCC
Q 008406 101 WLSGCDSVAKEVDLVEMIGGKSC-KS-DCSGQGVCNHELGQCRCFHGFRGKGC 151 (567)
Q Consensus 101 ~~~~C~~g~~g~~~~~~~~~~~C-~~-~Cs~~G~C~~~~G~C~C~~G~~G~~C 151 (567)
+...|...|.|..|.. -| |. +=.+|-+|+. +|.-.|.+||+|+.|
T Consensus 17 ~rv~C~~nyyG~~C~~-----~C~~~~d~~ghy~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 17 IRVVCDENYYGPNCSK-----FCKPRDDSFGHYTCDS-NGNKVCLPGWTGPNC 63 (63)
T ss_dssp ------TTEETTTT-E-----E---EEETTEEEEE-S-S--EEE-TTEESTTS
T ss_pred EEEECCCCCCCccccC-----CcCCCcCCcCCcccCC-CCCCCCCCCCcCCCC
Confidence 3456888899888874 34 22 2456889995 899999999999988
No 47
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=89.10 E-value=0.36 Score=34.21 Aligned_cols=27 Identities=30% Similarity=0.943 Sum_probs=22.5
Q ss_pred CCC---CCCCCCCCEEecCCC--eEEeCCCCc
Q 008406 121 KSC---KSDCSGQGVCNHELG--QCRCFHGFR 147 (567)
Q Consensus 121 ~~C---~~~Cs~~G~C~~~~G--~C~C~~G~~ 147 (567)
+|| +..|..++.|....| .|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 567 346988999988777 799999998
No 48
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=89.09 E-value=0.22 Score=36.51 Aligned_cols=20 Identities=35% Similarity=0.866 Sum_probs=16.7
Q ss_pred eee--CCeeecCCCcccCCCCC
Q 008406 289 HCR--GGFCQCDSGWYGVDCSI 308 (567)
Q Consensus 289 ~C~--~G~C~C~~G~~G~~C~~ 308 (567)
.|. +|.|.|+++|.|..|++
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 12 TCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SEEETCEEESBSTTEESTTS-E
T ss_pred cccCCCCEEeccccccCCcCcC
Confidence 675 78999999999999996
No 49
>PHA02887 EGF-like protein; Provisional
Probab=89.04 E-value=0.28 Score=42.45 Aligned_cols=26 Identities=35% Similarity=1.016 Sum_probs=21.5
Q ss_pred CCCCCeeee------CCeeecCCCcccCCCCCC
Q 008406 283 QCSGHGHCR------GGFCQCDSGWYGVDCSIP 309 (567)
Q Consensus 283 ~Cs~~G~C~------~G~C~C~~G~~G~~C~~~ 309 (567)
-|- ||+|. ...|.|.+||+|.+|+.-
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 366 68996 459999999999999864
No 50
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=0.37 Score=55.25 Aligned_cols=33 Identities=33% Similarity=0.772 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCEEecCCCeEEeCCCCcCCCCCcc
Q 008406 121 KSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSER 154 (567)
Q Consensus 121 ~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~ 154 (567)
..|+..|++||+|++ ...|+|.+||.+++|+..
T Consensus 626 ~~~~~~C~g~GVCnn-~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 626 SCCPTTCNGHGVCNN-ELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred cccccccCCCcccCC-CcceeeCCCCCCCccccc
Confidence 445778999999995 689999999999999986
No 51
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=86.18 E-value=0.48 Score=35.38 Aligned_cols=29 Identities=34% Similarity=0.754 Sum_probs=17.2
Q ss_pred CCCCCCEEecC----CC--eEEeCCCCcCCCCCcc
Q 008406 126 DCSGQGVCNHE----LG--QCRCFHGFRGKGCSER 154 (567)
Q Consensus 126 ~Cs~~G~C~~~----~G--~C~C~~G~~G~~Ce~~ 154 (567)
.||+||..-.+ .| .|+|..-|.|++|++.
T Consensus 18 ~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 18 SCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp --TTSEE--TTS-EETTEE--EE-TTEESTTS-EE
T ss_pred CcCCCCeeeeccccccCCccccccCCcCCCCcccC
Confidence 59999988431 23 6999999999999985
No 52
>smart00181 EGF Epidermal growth factor-like domain.
Probab=85.75 E-value=0.85 Score=30.42 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=19.2
Q ss_pred CCCCCCeeee----CCeeecCCCccc-CCCC
Q 008406 282 NQCSGHGHCR----GGFCQCDSGWYG-VDCS 307 (567)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~G-~~C~ 307 (567)
++|.++ +|+ ...|.|.+||.| ..|+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 357777 786 348999999999 7764
No 53
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=84.93 E-value=0.57 Score=40.08 Aligned_cols=31 Identities=42% Similarity=0.949 Sum_probs=24.1
Q ss_pred CCCCCCeeeeC---------CeeecCC-------------CcccCCCCCCccc
Q 008406 282 NQCSGHGHCRG---------GFCQCDS-------------GWYGVDCSIPSVM 312 (567)
Q Consensus 282 ~~Cs~~G~C~~---------G~C~C~~-------------G~~G~~C~~~~~~ 312 (567)
++|++||.|+. ..|+|.+ .|.|..|+..-..
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDvS 65 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDVS 65 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccccccc
Confidence 68999999972 2689987 6888888876443
No 54
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=84.57 E-value=0.44 Score=35.55 Aligned_cols=29 Identities=45% Similarity=0.927 Sum_probs=17.0
Q ss_pred CCCCCCeeee------CC--eeecCCCcccCCCCCCc
Q 008406 282 NQCSGHGHCR------GG--FCQCDSGWYGVDCSIPS 310 (567)
Q Consensus 282 ~~Cs~~G~C~------~G--~C~C~~G~~G~~C~~~~ 310 (567)
-.|++||..- +| .|.|..-|.|++|++..
T Consensus 17 i~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~~ 53 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTLI 53 (56)
T ss_dssp S--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE-
T ss_pred CCcCCCCeeeeccccccCCccccccCCcCCCCcccCC
Confidence 3699999984 33 79999999999999754
No 55
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=1 Score=51.85 Aligned_cols=34 Identities=35% Similarity=0.838 Sum_probs=30.1
Q ss_pred ccCCCCCCCeeee-CCeeecCCCcccCCCCCCccc
Q 008406 279 TCVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPSVM 312 (567)
Q Consensus 279 ~C~~~Cs~~G~C~-~G~C~C~~G~~G~~C~~~~~~ 312 (567)
.|+..|++||.|+ ...|+|.+||.+++|++....
T Consensus 627 ~~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~~~~ 661 (716)
T KOG3607|consen 627 CCPTTCNGHGVCNNELNCHCEPGWAPPFCFIFGYG 661 (716)
T ss_pred ccccccCCCcccCCCcceeeCCCCCCCccccccCC
Confidence 5677799999998 679999999999999998655
No 56
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=83.70 E-value=0.94 Score=38.77 Aligned_cols=32 Identities=31% Similarity=0.922 Sum_probs=23.9
Q ss_pred CCCCCCCCEEecCC----C---eEEeCC-------------CCcCCCCCccc
Q 008406 124 KSDCSGQGVCNHEL----G---QCRCFH-------------GFRGKGCSERI 155 (567)
Q Consensus 124 ~~~Cs~~G~C~~~~----G---~C~C~~-------------G~~G~~Ce~~~ 155 (567)
.++|++||.|.... + .|.|.+ .|.|+.|+..+
T Consensus 12 Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkD 63 (103)
T PF12955_consen 12 TNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKD 63 (103)
T ss_pred ccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccccc
Confidence 46799999997642 1 689987 57888888753
No 57
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=83.43 E-value=0.73 Score=31.64 Aligned_cols=25 Identities=32% Similarity=0.939 Sum_probs=18.4
Q ss_pred CCCCCCEEecCCC--eEEeCCCCcCCC
Q 008406 126 DCSGQGVCNHELG--QCRCFHGFRGKG 150 (567)
Q Consensus 126 ~Cs~~G~C~~~~G--~C~C~~G~~G~~ 150 (567)
.|..+.+|....+ .|.|++||.|+.
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCcEeecCCCCEEeECCCCCccCC
Confidence 5888999987555 799999999974
No 58
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=83.35 E-value=0.87 Score=30.59 Aligned_cols=21 Identities=43% Similarity=1.092 Sum_probs=18.0
Q ss_pred ccCCCcccCC-CCeEecCCCcc
Q 008406 175 SICPTHCDTT-RAMCFCGEGTK 195 (567)
Q Consensus 175 ~~C~g~C~~~-~g~C~C~~G~~ 195 (567)
+.|++.|+.. .++|.|++||.
T Consensus 6 t~CpA~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 6 TECPADCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCccCCCCCCceeCCCceE
Confidence 4799999985 66999999997
No 59
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=82.61 E-value=1.2 Score=32.35 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=14.5
Q ss_pred CCeeecCCCcccCCCCC
Q 008406 292 GGFCQCDSGWYGVDCSI 308 (567)
Q Consensus 292 ~G~C~C~~G~~G~~C~~ 308 (567)
+|+|.|+++++|.+|++
T Consensus 17 ~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 17 TGQCECKPNVTGRRCDR 33 (46)
T ss_pred CCEEECCCCCCCCCCCc
Confidence 68889999999999984
No 60
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=79.70 E-value=1.3 Score=39.10 Aligned_cols=26 Identities=35% Similarity=1.050 Sum_probs=20.8
Q ss_pred CCCCeeee------CCeeecCCCcccCCCCCCc
Q 008406 284 CSGHGHCR------GGFCQCDSGWYGVDCSIPS 310 (567)
Q Consensus 284 Cs~~G~C~------~G~C~C~~G~~G~~C~~~~ 310 (567)
|-+ |+|. ...|.|..||+|.+|+...
T Consensus 53 ClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 53 CLH-GDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred eEC-CEEEeeccCCCceeECCCCccccccccee
Confidence 544 4785 4589999999999999754
No 61
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=77.98 E-value=2.2 Score=31.61 Aligned_cols=31 Identities=39% Similarity=0.827 Sum_probs=23.1
Q ss_pred CCCCcccccccCCccCCCCCCCeeeeCCeeecCCCcc
Q 008406 266 GLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWY 302 (567)
Q Consensus 266 G~~G~~Ce~~~~~~C~~~Cs~~G~C~~G~C~C~~G~~ 302 (567)
-..|..|+.. .+|.++..|++|+|.|++||.
T Consensus 16 ~~~g~~C~~~------~qC~~~s~C~~g~C~C~~g~~ 46 (52)
T PF01683_consen 16 VQPGESCESD------EQCIGGSVCVNGRCQCPPGYV 46 (52)
T ss_pred CCCCCCCCCc------CCCCCcCEEcCCEeECCCCCE
Confidence 3446667643 356688999999999999974
No 62
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=77.89 E-value=1.6 Score=38.52 Aligned_cols=28 Identities=39% Similarity=0.929 Sum_probs=21.5
Q ss_pred CCCCCEEecCC----CeEEeCCCCcCCCCCccc
Q 008406 127 CSGQGVCNHEL----GQCRCFHGFRGKGCSERI 155 (567)
Q Consensus 127 Cs~~G~C~~~~----G~C~C~~G~~G~~Ce~~~ 155 (567)
|-+ |+|.... -.|.|..||+|.+||..+
T Consensus 53 ClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 53 CLH-GDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred eEC-CEEEeeccCCCceeECCCCccccccccee
Confidence 654 5895433 369999999999999853
No 63
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=71.15 E-value=2.1 Score=29.33 Aligned_cols=23 Identities=26% Similarity=0.743 Sum_probs=16.8
Q ss_pred CCCCCeeee----CCeeecCCCcccCC
Q 008406 283 QCSGHGHCR----GGFCQCDSGWYGVD 305 (567)
Q Consensus 283 ~Cs~~G~C~----~G~C~C~~G~~G~~ 305 (567)
.|..+++|. ...|+|++||.|+.
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCcEeecCCCCEEeECCCCCccCC
Confidence 577888886 45899999999863
No 64
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=61.14 E-value=3.6 Score=38.99 Aligned_cols=133 Identities=23% Similarity=0.552 Sum_probs=65.0
Q ss_pred CCEEecCCC--eEEeCCCCc---CCCCCccccccCCCCCCCCCCCCCcccccCC--CcccC-------CCCeEecCCCcc
Q 008406 130 QGVCNHELG--QCRCFHGFR---GKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDT-------TRAMCFCGEGTK 195 (567)
Q Consensus 130 ~G~C~~~~G--~C~C~~G~~---G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--g~C~~-------~~g~C~C~~G~~ 195 (567)
+|......+ .|.|.+||. -..||.. ..|..... ....|. +.|.. ....|.|.+||.
T Consensus 10 NG~LiQMSNHfEC~Cnegfvl~~EntCE~k--v~C~~~e~--------~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~ 79 (197)
T PF06247_consen 10 NGYLIQMSNHFECKCNEGFVLKNENTCEEK--VECDKLEN--------VNKPCGDYAKCINQANKGEERAYKCDCINGYI 79 (197)
T ss_dssp TEEEEEESSEEEEEESTTEEEEETTEEEE------SG-GG--------TTSEEETTEEEEE-SSTTSSTSEEEEE-TTEE
T ss_pred CCEEEEccCceEEEcCCCcEEccccccccc--eecCcccc--------cCccccchhhhhcCCCcccceeEEEecccCce
Confidence 455544344 799999995 4557663 34543110 001232 22322 234899999997
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcccCCCcccccccccccccccccCCCCCC---Cccc
Q 008406 196 YPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLL---GQFC 272 (567)
Q Consensus 196 G~~C~~~~~C~~~~~~~~c~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~---G~~C 272 (567)
-.. ..|... .|. ...|. .|.|..++... ....|.|. -|+. +..|
T Consensus 80 ~~~----~vCvp~------------------~C~---~~~Cg-~GKCI~d~~~~------~~~~CSC~-IGkV~~dn~kC 126 (197)
T PF06247_consen 80 LKQ----GVCVPN------------------KCN---NKDCG-SGKCILDPDNP------NNPTCSCN-IGKVPDDNKKC 126 (197)
T ss_dssp ESS----SSEEEG------------------GGS---S---T-TEEEEEEEGGG------SEEEEEE--TEEETTTTTES
T ss_pred eeC----CeEchh------------------hcC---ceecC-CCeEEecCCCC------CCceeEee-eceEeccCCcc
Confidence 432 122110 111 12333 58887654321 13489998 8887 5667
Q ss_pred ccccCCccCCCCCCCeeee----CCeeecCCCcccCC
Q 008406 273 EVPVSSTCVNQCSGHGHCR----GGFCQCDSGWYGVD 305 (567)
Q Consensus 273 e~~~~~~C~~~Cs~~G~C~----~G~C~C~~G~~G~~ 305 (567)
...-+..|...|..+-+|. -+.|.|.+|+.|..
T Consensus 127 tk~G~T~C~LKCk~nE~CK~~~~~Y~C~~~~~~~~~~ 163 (197)
T PF06247_consen 127 TKTGETKCSLKCKENEECKLVDGYYKCVCKEGFPGDG 163 (197)
T ss_dssp EEEE--------TTTEEEEEETTEEEEEE-TT-EEET
T ss_pred cCCCccceeeecCCCcceeeeCcEEEeecCCCCCCCC
Confidence 7666778888898899996 34899999987654
No 65
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=59.07 E-value=4.4 Score=28.56 Aligned_cols=21 Identities=29% Similarity=0.865 Sum_probs=17.6
Q ss_pred CCCCCCeeee----CCeeecCCCcc
Q 008406 282 NQCSGHGHCR----GGFCQCDSGWY 302 (567)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~ 302 (567)
+.|..++.|+ ...|.|++||.
T Consensus 10 ~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 10 HNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 4688889997 34899999997
No 66
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=57.52 E-value=11 Score=27.72 Aligned_cols=22 Identities=36% Similarity=0.975 Sum_probs=18.2
Q ss_pred CCCCCCCCEEecCCCeEEeCCCCc
Q 008406 124 KSDCSGQGVCNHELGQCRCFHGFR 147 (567)
Q Consensus 124 ~~~Cs~~G~C~~~~G~C~C~~G~~ 147 (567)
...|..+..|. .|+|.|+.||.
T Consensus 25 ~~qC~~~s~C~--~g~C~C~~g~~ 46 (52)
T PF01683_consen 25 DEQCIGGSVCV--NGRCQCPPGYV 46 (52)
T ss_pred cCCCCCcCEEc--CCEeECCCCCE
Confidence 34577889997 89999999984
No 67
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=44.57 E-value=13 Score=43.97 Aligned_cols=35 Identities=31% Similarity=0.827 Sum_probs=27.8
Q ss_pred CCCC-CCCCCCCCEEecCC--CeEEeC-CCCcCCCCCcc
Q 008406 120 GKSC-KSDCSGQGVCNHEL--GQCRCF-HGFRGKGCSER 154 (567)
Q Consensus 120 ~~~C-~~~Cs~~G~C~~~~--G~C~C~-~G~~G~~Ce~~ 154 (567)
.+.| +++|.|+|+|...- -.|.|. .||.|..||..
T Consensus 623 ~~~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE 661 (1591)
T KOG3514|consen 623 EKICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCERE 661 (1591)
T ss_pred ccccCCCcccCCCCccccccccccccccCcccCccccce
Confidence 3589 89999999997322 279994 79999999963
No 68
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=43.09 E-value=22 Score=30.67 Aligned_cols=28 Identities=32% Similarity=0.901 Sum_probs=21.9
Q ss_pred CCC--CCCCCCCCEEecCC-CeEEeCCCCcC
Q 008406 121 KSC--KSDCSGQGVCNHEL-GQCRCFHGFRG 148 (567)
Q Consensus 121 ~~C--~~~Cs~~G~C~~~~-G~C~C~~G~~G 148 (567)
++| ...|-..|.|+... ..|.|.+||.-
T Consensus 78 d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 577 46799999998543 37999999963
No 69
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=36.66 E-value=23 Score=42.49 Aligned_cols=35 Identities=26% Similarity=0.780 Sum_probs=28.6
Q ss_pred CCCC-CCCCCCCCEEecC--CCeEEeC-CCCcCCCCCcc
Q 008406 120 GKSC-KSDCSGQGVCNHE--LGQCRCF-HGFRGKGCSER 154 (567)
Q Consensus 120 ~~~C-~~~Cs~~G~C~~~--~G~C~C~-~G~~G~~Ce~~ 154 (567)
...| |+.|.++|.|+.. +-.|.|. .||+|..|...
T Consensus 545 ~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHts 583 (1306)
T KOG3516|consen 545 SDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTS 583 (1306)
T ss_pred ccccCCccccCCCcccccccceeEeccccccccccccCC
Confidence 3678 9999999999751 2379998 99999999864
No 70
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=32.43 E-value=28 Score=41.28 Aligned_cols=41 Identities=29% Similarity=0.866 Sum_probs=30.0
Q ss_pred ccccccCCcc-CCCCCCCeeeeCC----eeecC-CCcccCCCCCCcc
Q 008406 271 FCEVPVSSTC-VNQCSGHGHCRGG----FCQCD-SGWYGVDCSIPSV 311 (567)
Q Consensus 271 ~Ce~~~~~~C-~~~Cs~~G~C~~G----~C~C~-~G~~G~~C~~~~~ 311 (567)
.|....+..| +|+|.|+|.|..| .|.|. .||.|..|++...
T Consensus 617 sCs~~~~~~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE~t 663 (1591)
T KOG3514|consen 617 SCSLSNEKICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCEREAT 663 (1591)
T ss_pred ccchhhccccCCCcccCCCCccccccccccccccCcccCccccceee
Confidence 3443323345 4899999999855 79995 5999999998654
No 71
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=31.84 E-value=26 Score=21.83 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=6.3
Q ss_pred cccccCCCCCC
Q 008406 258 EECDCKYDGLL 268 (567)
Q Consensus 258 g~C~C~~~G~~ 268 (567)
++|.|+ +||.
T Consensus 2 y~C~C~-~Gy~ 11 (24)
T PF12662_consen 2 YTCSCP-PGYQ 11 (24)
T ss_pred EEeeCC-CCCc
Confidence 456676 6665
No 72
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=31.57 E-value=2.6e+02 Score=31.16 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=17.4
Q ss_pred HHHHHhhCCCcccCCccCCcEEEEec
Q 008406 399 AFYESILASPHRTLNGEEADFFFVPV 424 (567)
Q Consensus 399 ~f~~~ll~s~~rT~dp~eAd~FfVP~ 424 (567)
.+.|....|..-|.|+.+|=+| +|-
T Consensus 127 ~lleA~~~S~yyt~n~N~aclf-~Ps 151 (691)
T KOG1022|consen 127 ALLEAWHLSFYYTFNYNGACLF-MPS 151 (691)
T ss_pred HHHHHHHhccceecCCCceEEE-ecc
Confidence 3444555677889999999664 565
No 73
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=28.81 E-value=38 Score=32.93 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=19.6
Q ss_pred CcccCCCCeEec-CCCcccCCCCCCCC
Q 008406 179 THCDTTRAMCFC-GEGTKYPNRPVAEA 204 (567)
Q Consensus 179 g~C~~~~g~C~C-~~G~~G~~C~~~~~ 204 (567)
..|....++|+| ..|..|..|+.++.
T Consensus 104 ~~~~~~~~~c~c~~kgvvgd~c~~~e~ 130 (217)
T KOG1388|consen 104 SACVTLTGKCFCTTKGVVGDLCPKCEV 130 (217)
T ss_pred eeeeccCCccccccceEecccCccccc
Confidence 346777899999 67888888876543
No 74
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=28.61 E-value=76 Score=37.00 Aligned_cols=64 Identities=28% Similarity=0.654 Sum_probs=33.7
Q ss_pred CCCCCEEecCCCeEEeCCCCc----CCCCCccccccCCCCCCCCCCCCCcccccCCCcccC-CCC--eEecCCCccc
Q 008406 127 CSGQGVCNHELGQCRCFHGFR----GKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDT-TRA--MCFCGEGTKY 196 (567)
Q Consensus 127 Cs~~G~C~~~~G~C~C~~G~~----G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~-~~g--~C~C~~G~~G 196 (567)
|++-|.=.--.|.|.|.+||. |..|+. |..+.... ..|.-....|+.+-.. ..| .|.|..||.-
T Consensus 248 C~~dGeWlvpiG~C~C~aGye~~~~~~~C~a-----Cp~G~yK~-~~~~~~C~~CP~~S~s~~ega~~C~C~~gyyR 318 (996)
T KOG0196|consen 248 CSGDGEWLVPIGGCVCKAGYEEAENGKACQA-----CPPGTYKA-SQGDSLCLPCPPNSHSSSEGATSCTCENGYYR 318 (996)
T ss_pred EcCCCcEEEEcCceeecCCCCcccCCCccee-----CCCCcccC-CCCCCCCCCCCCCCCCCCCCCCcccccCCccc
Confidence 665554433467899999994 455654 55332110 0011111245533322 223 7999999873
No 75
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=28.34 E-value=71 Score=23.38 Aligned_cols=27 Identities=37% Similarity=0.397 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhcccc
Q 008406 9 FSWTLVATVASVLTLVSVVHLFLFPLV 35 (567)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (567)
+-|.+.++++++++-.++||...=|-+
T Consensus 10 yl~~~~~s~~sM~aGA~vVH~~ykPdl 36 (47)
T PF14990_consen 10 YLKSLVASLLSMLAGASVVHNIYKPDL 36 (47)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCccC
Confidence 447788899999999999999876655
No 76
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.38 E-value=2.4e+02 Score=31.56 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCcccCCccCCcEEEEeccceeeeeecCCCCcccccccccccchhHHHHHHHHHHHHHhcCchhhcCCCCC
Q 008406 398 MAFYESILASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRD 477 (567)
Q Consensus 398 ~~f~~~ll~s~~rT~dp~eAd~FfVP~~~s~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~p~W~r~~G~D 477 (567)
..|.+.+-...+.|.||+.|=++.+=+= -...| ..++..... -|- .-|+| |+.|++
T Consensus 218 ~~fq~t~~~n~~~ve~pd~ACiyi~lvg-------e~q~P-------~~l~p~ele--------kly-slp~w-~~dg~N 273 (907)
T KOG2264|consen 218 QVFQETIPNNVYLVETPDKACIYIHLVG-------EIQSP-------VVLTPAELE--------KLY-SLPHW-RTDGFN 273 (907)
T ss_pred HHHHHhcccceeEeeCCCccEEEEEEec-------cccCC-------CcCChHhhh--------hhh-cCccc-cCCCcc
Confidence 3566666677899999999987766441 11111 123332222 222 37999 889999
Q ss_pred eEEEe
Q 008406 478 HIWFF 482 (567)
Q Consensus 478 H~~v~ 482 (567)
|+++.
T Consensus 274 hvl~N 278 (907)
T KOG2264|consen 274 HVLFN 278 (907)
T ss_pred eEEEE
Confidence 99995
No 77
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=27.27 E-value=51 Score=27.99 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=22.1
Q ss_pred ccccchHHHHHHhhCC-CcccCCccCCcEEEEec
Q 008406 392 MLYGSQMAFYESILAS-PHRTLNGEEADFFFVPV 424 (567)
Q Consensus 392 ~~y~~E~~f~~~ll~s-~~rT~dp~eAd~FfVP~ 424 (567)
++|-+|.+. ..|.+. --.|.+|++||+++|--
T Consensus 12 N~~Dse~i~-~~l~~~G~~~~~~~e~AD~iiiNT 44 (98)
T PF00919_consen 12 NQYDSERIA-SILQAAGYEIVDDPEEADVIIINT 44 (98)
T ss_pred cHHHHHHHH-HHHHhcCCeeecccccCCEEEEEc
Confidence 566666653 344443 36799999999998875
No 78
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=27.22 E-value=76 Score=31.18 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=31.4
Q ss_pred cCceeEe-ecCCcccchhhhcCCCCcccCCccccCCCCccccccccccchHHHHHHhhC---------CCcccCCccCCc
Q 008406 349 KRPLLYV-YDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILA---------SPHRTLNGEEAD 418 (567)
Q Consensus 349 ~~~~IYv-YdLP~~fn~~ll~~~~~~~~c~~~~~~~~~~~~~~~~~y~~E~~f~~~ll~---------s~~rT~dp~eAd 418 (567)
.+++||| |||-|.-. .-..-|.||+ .+.+.|.++|+. +-=|-.=.+.-|
T Consensus 140 ptRKiYmLYdlvPS~e--------------------iTGGpWFtD~-elDvEfi~~ll~ii~rf~~~n~fp~kn~~~gpn 198 (301)
T COG5111 140 PTRKIYMLYDLVPSEE--------------------ITGGPWFTDN-ELDVEFIARLLEIIERFLEKNLFPRKNFEEGPN 198 (301)
T ss_pred CCceEEEEeccccccc--------------------ccCCCccccC-cccHHHHHHHHHHHHHHHHhccCCccchhcCCc
Confidence 3678987 88776431 1122343332 256667777773 111112225669
Q ss_pred EEEEeccc
Q 008406 419 FFFVPVLD 426 (567)
Q Consensus 419 ~FfVP~~~ 426 (567)
+||-|=|-
T Consensus 199 v~~~P~y~ 206 (301)
T COG5111 199 VFYAPKYE 206 (301)
T ss_pred cccCCccC
Confidence 99999873
No 79
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.38 E-value=69 Score=27.82 Aligned_cols=31 Identities=26% Similarity=0.611 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHhhhhhhhcccccCchhh
Q 008406 10 SWTLVATVASVLTLVSVVHLFLFPLVPSFDYF 41 (567)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 41 (567)
||+|++....+++.=.++.++.++- +.||.|
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~-~~fDpy 33 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPR-PAFDPY 33 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcccc-CCCCCc
Confidence 8999999888888777777764444 677775
No 80
>TIGR02659 TTQ_MADH_Lt methylamine dehydrogenase light chain. This family consists of the light chain of methylamine dehydrogenase light chain, a periplasmic enzyme. This subunit contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from Trp-114 and Trp-165 of the precursor, numbered according to the sequence from Paracoccus denitrificans. The enzyme forms a complex with the type I blue copper protein amicyanin and cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.63 E-value=2.5e+02 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccc
Q 008406 12 TLVATVASVLTLVSVVHLFLFPLVP 36 (567)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p 36 (567)
+||+.+..+++-+++ +|+||
T Consensus 26 s~l~~lG~~l~g~a~-----~PlLP 45 (186)
T TIGR02659 26 GFIGRLGTALAGSAL-----VPLLP 45 (186)
T ss_pred HHHHHHHHHHhhhhh-----ccccc
Confidence 466666666554443 78888
No 81
>COG4420 Predicted membrane protein [Function unknown]
Probab=20.63 E-value=76 Score=30.25 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=29.5
Q ss_pred ccccCcchHHHHHHHHHHHHHhhhhhhhcccccCc
Q 008406 4 IEKWRFSWTLVATVASVLTLVSVVHLFLFPLVPSF 38 (567)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 38 (567)
|-..+=||.|+.+-..++.+=-+++++++|++|..
T Consensus 51 ia~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wD 85 (191)
T COG4420 51 IARFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWD 85 (191)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 44567799999999999998899999999987743
No 82
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=20.05 E-value=62 Score=39.06 Aligned_cols=35 Identities=29% Similarity=0.775 Sum_probs=28.8
Q ss_pred Ccc-CCCCCCCeeee----CCeeecC-CCcccCCCCCCccc
Q 008406 278 STC-VNQCSGHGHCR----GGFCQCD-SGWYGVDCSIPSVM 312 (567)
Q Consensus 278 ~~C-~~~Cs~~G~C~----~G~C~C~-~G~~G~~C~~~~~~ 312 (567)
+.| ||.|..+|.|. +..|.|. .||.|..|..+...
T Consensus 546 drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~e 586 (1306)
T KOG3516|consen 546 DRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIYE 586 (1306)
T ss_pred cccCCccccCCCcccccccceeEeccccccccccccCCCcc
Confidence 455 58999999997 5589998 89999999986543
Done!