Query 008408
Match_columns 566
No_of_seqs 181 out of 248
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 11:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 8E-181 2E-185 1426.6 30.7 455 30-497 1-478 (478)
2 PF15468 DUF4636: Domain of un 57.0 7.3 0.00016 39.9 2.2 39 270-313 25-63 (243)
3 COG3114 CcmD Heme exporter pro 32.6 97 0.0021 26.5 4.7 42 300-341 9-59 (67)
4 KOG3643 GABA receptor [Signal 31.5 29 0.00063 38.9 2.0 25 40-64 310-334 (459)
5 TIGR03777 RPE4 Rickettsial pal 24.8 32 0.0007 25.6 0.6 9 348-356 24-32 (32)
6 PF15031 DUF4528: Domain of un 22.2 19 0.00041 33.8 -1.2 50 208-276 27-81 (126)
7 PF09878 DUF2105: Predicted me 21.5 88 0.0019 31.9 3.1 46 280-330 159-207 (212)
8 TIGR01106 ATPase-IIC_X-K sodiu 21.2 2.8E+02 0.0061 33.9 7.8 43 352-394 809-853 (997)
9 PRK14472 F0F1 ATP synthase sub 17.6 89 0.0019 30.0 2.2 46 23-71 9-55 (175)
10 PF13198 DUF4014: Protein of u 16.4 2.7E+02 0.0058 24.3 4.4 31 293-332 19-49 (72)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=7.6e-181 Score=1426.57 Aligned_cols=455 Identities=56% Similarity=0.953 Sum_probs=427.0
Q ss_pred CCcceeeccce----eeehhHhHhhhhhhhHHHHHHHHHHhhhhh--------hhhhhhh----hhhhhccccccccccc
Q 008408 30 PKGSLIRHPLG----LLLVFVQLSFSFPFSWKRVFTNLERGLRRG--------TRELCLK----PSRRSKLSYISKICIP 93 (566)
Q Consensus 30 ~~~~l~~tpt~----Vc~v~V~iSl~~Er~Lh~lgk~L~~~~~k~--------~~ELMLL----LLLTV~Q~~IskICIp 93 (566)
++++||+|||| ||+|||++|+++||+||+|||||+|++||+ +|||||| |||||+|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 47899999999 999999999999999999999999988776 4999999 9999999999999999
Q ss_pred ccCCCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhc--ccccccc-CCCcccccchhhhhHHHHHHHHHHHHHH
Q 008408 94 SKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQHRYLAA--AATSTEC-EKGSEPLITVEALHQLHILIFFLAVFHV 170 (566)
Q Consensus 94 ~~~~~~mlPC~~~~~~~~~~~~~~~~~~~~~ll~~~RR~La~--~~~~~~C-~kGkvPlvS~~gLHQLHIFIFVLAv~HV 170 (566)
++++++|+||+..++.++.+ ++ . .+||+|+. +++.++| +||||||+|.|||||||||||||||+||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~-----~~-~-----~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV 149 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEG-----SS-H-----NRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHV 149 (478)
T ss_pred hhHHhcccCCCCcccccccc-----cc-h-----hhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999998654433211 00 1 46788873 3457899 6799999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccccccCCCCCceeeeeeccccccccCCCCCchhhhhHhhHHhhhCCCcchhhHH
Q 008408 171 LYSAITMMLGRLKIRGWKKWEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRADYL 250 (566)
Q Consensus 171 ~Ys~~Tm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qtsFvr~H~~~ws~~~~l~wi~cFfRQF~~SV~k~DYl 250 (566)
+||++||+||++|||+||+||+|+++++|+..+||+|+|++||++|+|+|+++|++++++.|++|||||||+||+|+||+
T Consensus 150 ~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~~~~~wi~~FfrQF~~SV~k~DYl 229 (478)
T PF03094_consen 150 LYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKSPVLSWIVCFFRQFYGSVTKSDYL 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccChhHHhHHHHHHHhhccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhcCCCCCCcHHHHHHHHhhhccccccccchHHHHHHHHHHHhcccchhhHHHhhhHHHHHHHHhhhhhHHH
Q 008408 251 TLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWASLIPLIIILAIGTELQSI 330 (566)
Q Consensus 251 tLR~GFI~~H~~~~~kFDFhkYi~RsLEdDFk~VVGIS~~LW~fvViFLLlNv~Gw~~yfWlsfiPlillLlVGTKLq~I 330 (566)
|||+|||++|++++++|||||||+||||||||+||||||+||+|||+|||+|++|||+|||++|||++++|+||||||+|
T Consensus 230 tLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~I 309 (478)
T PF03094_consen 230 TLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHI 309 (478)
T ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCcccccCCCcccccCCChHHHHHHHHHHhhhhhhhHHHHHHHhhcCCcccccccccceeeeeee
Q 008408 331 LTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLIHFALFQNAFQITYFFWIWYSFSLKSCFHANFTLAIMKVAL 410 (566)
Q Consensus 331 It~lAlei~e~~~~v~G~p~V~PsD~lFWF~rPrllL~LIHfiLFQNAFelAfF~W~w~~fG~~SCf~~~~~~ii~Rl~~ 410 (566)
|++||+||+|++++++|+|+|+|+|++||||||+|||+||||||||||||||||+|+||+||++||||++.+++++|+++
T Consensus 310 i~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~ 389 (478)
T PF03094_consen 310 ITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVM 389 (478)
T ss_pred HHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccceeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccchhhHHHHHhhccccccccccHhHHHHHHHHHHHHHhhhcCCCCC---C-CCCCCCCCCCCCccccCCc
Q 008408 411 GVGVLFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHMAVKKRKKRGKSS---T-RTLGESVSPSPSTVYSSGG 486 (566)
Q Consensus 411 Gv~vQvLCSY~TLPLYALVTQMGS~~Kk~if~e~v~~aL~~W~~~akkk~k~~~~~---~-~~~~~~~~~~~~~~~~s~~ 486 (566)
|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+++++++ . ++.++++ ++|++++||+
T Consensus 390 gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~ 467 (478)
T PF03094_consen 390 GVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSAHSGSTTPGSSRS--TTPSRGSSPV 467 (478)
T ss_pred hhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC--CCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999877633 2 2223333 6889999999
Q ss_pred cccccccccCC
Q 008408 487 HTLHRFKTTGH 497 (566)
Q Consensus 487 ~~lh~~~~~~~ 497 (566)
|+||||+++++
T Consensus 468 ~ll~~~~~~~~ 478 (478)
T PF03094_consen 468 HLLHRFKTRSD 478 (478)
T ss_pred hhhccCCCCCC
Confidence 99999999753
No 2
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=56.97 E-value=7.3 Score=39.90 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=28.9
Q ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHhcccchhhHHHhh
Q 008408 270 QKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWAS 313 (566)
Q Consensus 270 hkYi~RsLEdDFk~VVGIS~~LW~fvViFLLlNv~Gw~~yfWls 313 (566)
+.|=-| +||+..++| +..||-||+|++|.=. .+.++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 444444 899999988 7899999998886633 56777765
No 3
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=32.56 E-value=97 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=26.0
Q ss_pred HhcccchhhHHHhhh----HHHHHHHHhh-----hhhHHHHHHHHHHHHhh
Q 008408 300 LLNVNGWHALFWASL----IPLIIILAIG-----TELQSILTKMALEISER 341 (566)
Q Consensus 300 LlNv~Gw~~yfWlsf----iPlillLlVG-----TKLq~IIt~lAlei~e~ 341 (566)
++|..|...|.|+++ +|++++.+.- +-|+.|.-+.|-|..-+
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR~~ 59 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREARLR 59 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999765 6666544443 23555666666664433
No 4
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=31.49 E-value=29 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.273 Sum_probs=22.5
Q ss_pred eeeehhHhHhhhhhhhHHHHHHHHH
Q 008408 40 GLLLVFVQLSFSFPFSWKRVFTNLE 64 (566)
Q Consensus 40 ~Vc~v~V~iSl~~Er~Lh~lgk~L~ 64 (566)
|||+|||.+|++=-...+++.+...
T Consensus 310 ~vCFvfVF~sLLEYA~V~Y~~~~~~ 334 (459)
T KOG3643|consen 310 GVCFVFVFLSLLEYAAVNYMFKRRG 334 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6999999999998889999998873
No 5
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=24.76 E-value=32 Score=25.56 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=7.2
Q ss_pred cccccCCCc
Q 008408 348 IPLVQGSDQ 356 (566)
Q Consensus 348 ~p~V~PsD~ 356 (566)
+|||||+||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 578888886
No 6
>PF15031 DUF4528: Domain of unknown function (DUF4528)
Probab=22.18 E-value=19 Score=33.81 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=34.3
Q ss_pred eeeeeeccccccccCCCCCchhhhhHhhHHhhhCCCcchhhHHHHHHh---HhhhhcCCCC--CCcHHHHHHHH
Q 008408 208 FRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRADYLTLRNG---FINVHLAPGS--KFNFQKYIKRS 276 (566)
Q Consensus 208 ~r~~~qtsFvr~H~~~ws~~~~l~wi~cFfRQF~~SV~k~DYltLR~G---FI~~H~~~~~--kFDFhkYi~Rs 276 (566)
.+-.+...|++.|++ | .|..+.|.-||-| ||..||...+ +.++.+-.-|.
T Consensus 27 y~~V~nDqfG~ShFN-W------------------~v~g~NYhILRTGCfPfiKYHCtkrp~qdL~~ed~ff~~ 81 (126)
T PF15031_consen 27 YSDVRNDQFGLSHFN-W------------------TVDGSNYHILRTGCFPFIKYHCTKRPPQDLSFEDRFFTA 81 (126)
T ss_pred hhhcccccccccccC-c------------------ccCCceEEEEeecCccceeeeecCCChhhcchHHHHHHH
Confidence 344556667777765 4 4888999999998 9999997555 45444443333
No 7
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=21.49 E-value=88 Score=31.93 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=28.2
Q ss_pred ccccccccchHHHHHHHHHHHhcccchhhHHHhhhHH---HHHHHHhhhhhHHH
Q 008408 280 DFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWASLIP---LIIILAIGTELQSI 330 (566)
Q Consensus 280 DFk~VVGIS~~LW~fvViFLLlNv~Gw~~yfWlsfiP---lillLlVGTKLq~I 330 (566)
-...+-||.|-+|++.-+..++. .-+|+.++= .-+++=||+|+--|
T Consensus 159 gi~~~SGiaWalWi~gF~~Ff~~-----P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 159 GIEGVSGIAWALWIAGFIGFFLF-----PQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 34567888899998765444443 334555532 23567788887543
No 8
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=21.19 E-value=2.8e+02 Score=33.95 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=32.7
Q ss_pred cCCC--cccccCCChHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc
Q 008408 352 QGSD--QYFWFGRPQLVLHLIHFALFQNAFQITYFFWIWYSFSLK 394 (566)
Q Consensus 352 ~PsD--~lFWF~rPrllL~LIHfiLFQNAFelAfF~W~w~~fG~~ 394 (566)
+|++ +=..++++.++...+-..++|-.+.++.|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4554 346777777777777778899999999999988877753
No 9
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=17.65 E-value=89 Score=29.99 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=29.0
Q ss_pred cccccCCCCcceeeccce-eeehhHhHhhhhhhhHHHHHHHHHHhhhhhh
Q 008408 23 LEQGVAAPKGSLIRHPLG-LLLVFVQLSFSFPFSWKRVFTNLERGLRRGT 71 (566)
Q Consensus 23 ~~~g~~~~~~~l~~tpt~-Vc~v~V~iSl~~Er~Lh~lgk~L~~~~~k~~ 71 (566)
+|.|+.++.. .+..| ++..+|++.++.--..+.+.+.|+++++++.
T Consensus 9 ~~~~~~~~~~---~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~ 55 (175)
T PRK14472 9 LSGGLLSPNP---GLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQ 55 (175)
T ss_pred hcCCccCCCH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3555544432 12346 4455555556666677889999999988775
No 10
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=16.36 E-value=2.7e+02 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.648 Sum_probs=23.2
Q ss_pred HHHHHHHHhcccchhhHHHhhhHHHHHHHHhhhhhHHHHH
Q 008408 293 TSFVVFLLLNVNGWHALFWASLIPLIIILAIGTELQSILT 332 (566)
Q Consensus 293 ~fvViFLLlNv~Gw~~yfWlsfiPlillLlVGTKLq~IIt 332 (566)
+|.++|+++ . ++..|++++.++|--.|.++.
T Consensus 19 LF~ilfIvl--------m-ipI~pll~~~~i~~~~E~l~e 49 (72)
T PF13198_consen 19 LFFILFIVL--------M-IPISPLLFVWIIGKIIEPLFE 49 (72)
T ss_pred HHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 566777765 2 889999999999986655554
Done!