Query 008408
Match_columns 566
No_of_seqs 181 out of 248
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 02:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uon_A Human M2 muscarinic ace 12.2 4.7E+02 0.016 25.5 7.3 24 158-181 58-81 (467)
2 2knc_B Integrin beta-3; transm 11.4 2.7E+02 0.0094 22.9 4.5 22 184-205 41-62 (79)
3 3rko_A NADH-quinone oxidoreduc 7.4 2.6E+02 0.0088 25.7 3.0 12 293-304 70-81 (147)
4 1wy3_A Villin; structural prot 6.7 86 0.003 22.5 -0.4 12 278-289 3-14 (35)
5 2j3w_A Sedlin, trafficking pro 6.7 1.4E+02 0.0049 26.5 0.9 29 420-452 111-139 (142)
6 1und_A Advillin, P92; actin bi 6.5 89 0.003 22.7 -0.4 12 278-289 5-16 (37)
7 2w7n_A TRFB transcriptional re 6.5 2.6E+02 0.009 24.0 2.4 24 438-461 75-98 (101)
8 2our_A CAMP and CAMP-inhibited 6.1 3E+02 0.01 28.0 3.0 62 391-459 261-324 (331)
9 2ztb_A Crystal protein; beta-h 5.8 93 0.0032 31.3 -0.9 17 351-367 203-219 (252)
10 2l6x_A GPR, green-light absorb 5.5 1.1E+03 0.036 22.8 6.5 51 247-312 57-109 (243)
No 1
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=12.21 E-value=4.7e+02 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008408 158 LHILIFFLAVFHVLYSAITMMLGR 181 (566)
Q Consensus 158 LHIFIFVLAv~HV~Ys~~Tm~Lg~ 181 (566)
.++||..||+..++++++++.+..
T Consensus 58 ~~~~l~~La~aDll~~~~~~p~~~ 81 (467)
T 3uon_A 58 NNYFLFSLACADLIIGVFSMNLYT 81 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888776544
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.44 E-value=2.7e+02 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhcccccccCCCC
Q 008408 184 IRGWKKWEEETSTHDYEFSNDP 205 (566)
Q Consensus 184 ir~Wk~WE~e~~~~~~~~~~dp 205 (566)
-|.++++|+|-+....+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 6899999999876655544455
No 3
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=7.39 E-value=2.6e+02 Score=25.67 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=8.1
Q ss_pred HHHHHHHHhccc
Q 008408 293 TSFVVFLLLNVN 304 (566)
Q Consensus 293 ~fvViFLLlNv~ 304 (566)
+++++|+++++.
T Consensus 70 LiAilFlIFDvE 81 (147)
T 3rko_A 70 LVAMFFVIFDVE 81 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456777777665
No 4
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=6.68 E-value=86 Score=22.54 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=9.0
Q ss_pred hhccccccccch
Q 008408 278 EDDFKIVVGVSP 289 (566)
Q Consensus 278 EdDFk~VVGIS~ 289 (566)
++||+.|.|+|.
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888774
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=6.66 E-value=1.4e+02 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=18.6
Q ss_pred ccchhhHHHHHhhccccccccccHhHHHHHHHH
Q 008408 420 YITLPLYALVTQMGSQMKKSIFDEQTSKALKRW 452 (566)
Q Consensus 420 Y~TLPLYALVTQMGS~~Kk~if~e~v~~aL~~W 452 (566)
|+.=|+| +.|...+...|+++|.+.+++|
T Consensus 111 ~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 111 FAMNPFY----EPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp HHHSTTC----CTTCCCCCHHHHHHHHHHHHHH
T ss_pred HhcCCCC----CCCCceecHHHHHHHHHHHHHh
Confidence 3334555 3466677777777777777766
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=6.54 E-value=89 Score=22.70 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=9.4
Q ss_pred hhccccccccch
Q 008408 278 EDDFKIVVGVSP 289 (566)
Q Consensus 278 EdDFk~VVGIS~ 289 (566)
++||+.|.|+|.
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
No 7
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=6.46 E-value=2.6e+02 Score=24.03 Aligned_cols=24 Identities=17% Similarity=0.574 Sum_probs=18.1
Q ss_pred cccccHhHHHHHHHHHHHHHhhhc
Q 008408 438 KSIFDEQTSKALKRWHMAVKKRKK 461 (566)
Q Consensus 438 k~if~e~v~~aL~~W~~~akkk~k 461 (566)
..+.+++.+.-+++|++.|+||..
T Consensus 75 ~v~lP~~~a~~v~~~~~~a~~~~~ 98 (101)
T 2w7n_A 75 TAVLPEHQAYIVRKWEADAKKKQE 98 (101)
T ss_dssp EEEECHHHHHHHHHHHHHHHC---
T ss_pred eeecCHHHHHHHHHHHHHHHHhhc
Confidence 345689999999999999988764
No 8
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=6.10 E-value=3e+02 Score=27.98 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=40.4
Q ss_pred cCCc-cccccccc-ceeeeeeehhcccccccccchhhHHHHHhhccccccccccHhHHHHHHHHHHHHHhh
Q 008408 391 FSLK-SCFHANFT-LAIMKVALGVGVLFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHMAVKKR 459 (566)
Q Consensus 391 fG~~-SCf~~~~~-~ii~Rl~~Gv~vQvLCSY~TLPLYALVTQMGS~~Kk~if~e~v~~aL~~W~~~akkk 459 (566)
.|.. |-+|+... .-+++.=+|++ .|+.+|||..++++-..++. .-+++.+.++.|.+.++++
T Consensus 261 lgl~~sp~~DR~~~~~~~k~QigFi-----~~vv~Pl~~~l~~~~p~~~~--~~~~l~~N~~~W~~~~~~~ 324 (331)
T 2our_A 261 LGIQPIPMMDRDKKDEVPQGQLGFY-----NAVAIPCYTTLTQILPPTEP--LLKACRDNLSQWEKVIRGE 324 (331)
T ss_dssp TTCCCCGGGCGGGGGGHHHHHHHHH-----HHTHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCccCccccccchHHHHHHH-----HHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHHHHHhCC
Confidence 3553 44454332 22444444543 48899999999988655553 3478999999998776654
No 9
>2ztb_A Crystal protein; beta-hairpin, toxin; 2.38A {Bacillus thuringiensis serovar dakota}
Probab=5.78 E-value=93 Score=31.25 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=12.5
Q ss_pred ccCCCcccccCCChHHH
Q 008408 351 VQGSDQYFWFGRPQLVL 367 (566)
Q Consensus 351 V~PsD~lFWF~rPrllL 367 (566)
|-|+++||||..++-+|
T Consensus 203 v~~~gHyfWf~~v~~ll 219 (252)
T 2ztb_A 203 VGPGGHYFWFNPARDVL 219 (252)
T ss_dssp ETTTTEEEEEEEHHHHS
T ss_pred ccCCCcEEEeCCHHHHh
Confidence 45788888888777665
No 10
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=5.55 E-value=1.1e+03 Score=22.80 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=27.9
Q ss_pred hhHHHHHHhHhhhhcCCCCCCcHHHHHHHHhhhccccccccchHHHHHHHHHHHhcccc--hhhHHHh
Q 008408 247 ADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNG--WHALFWA 312 (566)
Q Consensus 247 ~DYltLR~GFI~~H~~~~~kFDFhkYi~RsLEdDFk~VVGIS~~LW~fvViFLLlNv~G--w~~yfWl 312 (566)
.-|++||.|+..+. ..+ +|.+|+-=. +..|| ..+-+.++++..| +...+|-
T Consensus 57 ~~Yf~Ma~~~~~~~--~~~--~~~RYidWl----------lTvPL-llvel~Li~~~~g~~~~~~~~~ 109 (243)
T 2l6x_A 57 WHYMYMRGVWIETG--DSP--TVFRYIDWL----------LTVPL-LICEFYLILAAATNVAGSLFKK 109 (243)
T ss_dssp HHHHHHHHHHHHHS--CCC--HHHHHHHHH----------HHHHH-HHHHHHHHHHTTTSCCTHHHHH
T ss_pred HHHHHHHHhhcccC--Ccc--ceeehhcHH----------HHHHH-HHHHHHHHHhccCCccHHHHHH
Confidence 46999999988762 222 566665321 12222 3444555555433 6666763
Done!