Query 008408
Match_columns 566
No_of_seqs 181 out of 248
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 02:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008408.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008408hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 19.1 20 0.0015 25.8 1.4 18 364-381 29-46 (51)
2 d1xrda1 f.3.1.1 (A:1-52) Light 9.8 64 0.0047 23.5 1.9 14 155-168 14-27 (52)
3 d1ug0a_ a.217.1.1 (A:) Splicin 8.3 90 0.0066 24.1 2.4 55 325-391 25-80 (88)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 6.7 40 0.0029 22.6 -0.4 12 278-289 3-14 (35)
5 d1unda_ a.14.1.1 (A:) Advillin 6.5 42 0.003 22.7 -0.4 12 278-289 4-15 (36)
6 d2j3wa1 d.110.4.3 (A:1-140) Se 6.3 73 0.0053 26.5 0.9 34 415-452 104-137 (140)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 5.6 1.6E+02 0.012 19.7 2.2 13 160-172 22-34 (37)
8 d1q1ha_ a.4.5.41 (A:) Transcri 4.7 45 0.0032 26.6 -1.5 7 305-311 74-80 (88)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 4.2 2.6E+02 0.019 21.1 3.0 29 42-70 7-35 (158)
10 d1iyca_ g.31.1.2 (A:) Antifung 4.1 1.3E+02 0.0096 19.8 0.9 9 139-147 15-23 (36)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.08 E-value=20 Score=25.84 Aligned_cols=18 Identities=50% Similarity=0.744 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHhhhhhhh
Q 008408 364 QLVLHLIHFALFQNAFQI 381 (566)
Q Consensus 364 rllL~LIHfiLFQNAFel 381 (566)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 578889999999999976
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.78 E-value=64 Score=23.48 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHH
Q 008408 155 LHQLHILIFFLAVF 168 (566)
Q Consensus 155 LHQLHIFIFVLAv~ 168 (566)
+--+++|+|+||+.
T Consensus 14 lva~~~fL~~LAl~ 27 (52)
T d1xrda1 14 LVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44578999999964
No 3
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.28 E-value=90 Score=24.15 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHhhcccccCcccc-cCCCcccccCCChHHHHHHHHHHhhhhhhhHHHHHHHhhc
Q 008408 325 TELQSILTKMALEISERHAVVQGIPLV-QGSDQYFWFGRPQLVLHLIHFALFQNAFQITYFFWIWYSF 391 (566)
Q Consensus 325 TKLq~IIt~lAlei~e~~~~v~G~p~V-~PsD~lFWF~rPrllL~LIHfiLFQNAFelAfF~W~w~~f 391 (566)
.++..||.++|.=|++.+...+-...- +.+|..|||=+ -++.=.-+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~------------d~~~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLH------------DKNSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHH------------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeC------------CCCCCCcHHHHHHHHHH
Confidence 367899999999998866554433222 35788899732 02333346677777665
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.71 E-value=40 Score=22.64 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=8.8
Q ss_pred hhccccccccch
Q 008408 278 EDDFKIVVGVSP 289 (566)
Q Consensus 278 EdDFk~VVGIS~ 289 (566)
++||+.|.|+|-
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 577888877774
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.54 E-value=42 Score=22.69 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=8.9
Q ss_pred hhccccccccch
Q 008408 278 EDDFKIVVGVSP 289 (566)
Q Consensus 278 EdDFk~VVGIS~ 289 (566)
++||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 577888888774
No 6
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.28 E-value=73 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=25.2
Q ss_pred cccccccchhhHHHHHhhccccccccccHhHHHHHHHH
Q 008408 415 LFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRW 452 (566)
Q Consensus 415 QvLCSY~TLPLYALVTQMGS~~Kk~if~e~v~~aL~~W 452 (566)
++-+-|+.=|+| +.|+..+-..|+++|++..++|
T Consensus 104 ~lYv~~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 104 DLYIKFAMNPFY----EPNSPIRSSAFDRKVQFLGKKH 137 (140)
T ss_dssp HHHHHHHHSTTC----CTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccC----CCCCcccCHHHHHHHHHHHHHH
Confidence 333456666777 4577788888999999888887
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.64 E-value=1.6e+02 Score=19.72 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 008408 160 ILIFFLAVFHVLY 172 (566)
Q Consensus 160 IFIFVLAv~HV~Y 172 (566)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999876555
No 8
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.66 E-value=45 Score=26.59 Aligned_cols=7 Identities=43% Similarity=1.863 Sum_probs=3.6
Q ss_pred chhhHHH
Q 008408 305 GWHALFW 311 (566)
Q Consensus 305 Gw~~yfW 311 (566)
||++|+|
T Consensus 74 gw~~Y~W 80 (88)
T d1q1ha_ 74 GWFIYYW 80 (88)
T ss_dssp CCCEEEE
T ss_pred CcEEEEE
Confidence 5555555
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.17 E-value=2.6e+02 Score=21.05 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=23.5
Q ss_pred eehhHhHhhhhhhhHHHHHHHHHHhhhhh
Q 008408 42 LLVFVQLSFSFPFSWKRVFTNLERGLRRG 70 (566)
Q Consensus 42 c~v~V~iSl~~Er~Lh~lgk~L~~~~~k~ 70 (566)
..|+++|++|+-=.+=.+.++.++++++.
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~ 35 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSE 35 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888889998887654
No 10
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=4.14 E-value=1.3e+02 Score=19.75 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=7.0
Q ss_pred ccccCCCcc
Q 008408 139 STECEKGSE 147 (566)
Q Consensus 139 ~~~C~kGkv 147 (566)
...|++|||
T Consensus 15 rsncpkgkv 23 (36)
T d1iyca_ 15 RSNCPKGKV 23 (36)
T ss_dssp TSCCCSSCE
T ss_pred ccCCCCcce
Confidence 357999986
Done!