BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008415
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 223 LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLN 282
L L LGGN+++ + +G F +++L L+L N L+ LP+G+ L +L+ L
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGV------FDKLTQLKELA 106
Query: 283 LDYTRFLSIIPHQLISGFSKLEVLRLF 309
L+ T L +P + ++L+ LRL+
Sbjct: 107 LN-TNQLQSLPDGVFDKLTQLKDLRLY 132
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260
+ ++L GN + +S + L L+L GN+++ + +G F ++ L+ L L N L+
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQS 123
Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
LP G+ L L YLNL + + S +P + + L L L
Sbjct: 124 LPDGV------FDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL 164
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281
+L L LGGN+++ + G F ++ L+ L L N L+ +P+G L L+ L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGA------FDKLTNLQTL 160
Query: 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
+L T L +PH KL+ + LFG F
Sbjct: 161 SLS-TNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281
+L L LGGN+++ + G F ++ L+ L L N L+ +P+G L L+ L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGA------FDKLTNLQTL 160
Query: 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
+L T L +PH KL+ + LFG F
Sbjct: 161 SLS-TNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLL---LGGNRIEEITDGFFQSMSTLRVLSLRI 254
+EG + + G+ +L +IP LV L L GNR++ I G FQ +++LR L L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 255 NISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
++ + R +LK+LE+ LNL + +S +PH L + +LE + L
Sbjct: 212 ----AQVATIERNAFDDLKSLEE---LNLSHNNLMS-LPHDLFTPLHRLERVHL 257
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLL---LGGNRIEEITDGFFQSMSTLRVLSLRI 254
+EG + + G+ +L +IP LV L L GNR++ I G FQ +++LR L L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM- 210
Query: 255 NISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
++ + R +LK+LE+ LNL + +S +PH L + +LE + L
Sbjct: 211 ---HAQVATIERNAFDDLKSLEE---LNLSHNNLMS-LPHDLFTPLHRLERVHL 257
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
+ ++L GN + +S + L L+L GN+++ + +G F ++ L+ L L N L+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQ 122
Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
LP G+ L L YL L Y L +P + + L L L
Sbjct: 123 SLPDGV------FDKLTNLTYLYL-YHNQLQSLPKGVFDKLTNLTRLDL 164
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
+T+A E ++ + I+S+ I P + L LGGN++ +I+ + ++ L
Sbjct: 30 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNL 87
Query: 248 RVLSLRINISLRKLPSGI 265
L L N L+ LP+G+
Sbjct: 88 TYLILTGN-QLQSLPNGV 104
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 19/102 (18%)
Query: 226 LLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-----------------RGL 268
L LG N++ + G F S++ L VL L N L LPS + L
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
P+ ++ L L +L LD + S IPH S L LFG
Sbjct: 128 PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFG 168
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 199 EGAKRVSLMGNGIR--SLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
E K + L N I S S++ C L L+L N I I + F S+ +L L L N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
L L S K L L +LNL + ++ L S +KL++LR+
Sbjct: 112 -LSNLSSSW------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 199 EGAKRVSLMGNGIR--SLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
E K + L N I S S++ C L L+L N I I + F S+ +L L L N
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
L L S K L L +LNL + ++ L S +KL++LR+
Sbjct: 86 -LSNLSSSW------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280
P L TL+L N + + ++ TL L NI + K + +P+ + EK++Y
Sbjct: 361 PSLQTLILRQNHLASLE----KTGETLLTLKNLTNIDISK--NSFHSMPETCQWPEKMKY 414
Query: 281 LNLDYTRFLSI---IPHQL 296
LNL TR S+ IP L
Sbjct: 415 LNLSSTRIHSVTGCIPKTL 433
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 201 AKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
A R+ L N ++SL +L L L N+I+ + DG F ++ L +L L N L
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KL 88
Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI 291
+ LP+G+ L +L+ L LD + S+
Sbjct: 89 QSLPNGV------FDKLTQLKELALDTNQLKSV 115
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 173
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 174 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 208
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 170
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 171 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 205
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N R +P
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP------ 171
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
L L KL+ L L + + + G L+VL LF
Sbjct: 172 ---LARLTKLQNLYLSKNHISDL---RALRGLKNLDVLELFS 207
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 173
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 174 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 208
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 171
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 172 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 206
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 142 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 193
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
L L KL+ L L + + ++G L+VL LF
Sbjct: 194 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 229
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
N IR L P RL TLL+ NRI I +G Q++ L L L N SL +L G
Sbjct: 52 NEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL-TNNSLVEL-----GD 105
Query: 269 PQELKALEKLRYL 281
L +L+ L YL
Sbjct: 106 LDPLASLKSLTYL 118
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 22/103 (21%)
Query: 219 TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLP--------- 269
T L L L N+I +I D F + L+VL+L N+ S GLP
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 270 --------QELKALEKLRYLN-----LDYTRFLSIIPHQLISG 299
Q K LEKL+ L+ L F+ IP +SG
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 168
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
L L KL+ L L + + ++G L+VL LF
Sbjct: 169 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 204
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 212 RSLSE----IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG 267
RSL+ IPT +++ L + N+I ++ G F S++ L L+L +N L LP G+
Sbjct: 29 RSLASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVN-QLTALPVGV-- 83
Query: 268 LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L KL +L L + S IP + L + LF
Sbjct: 84 ----FDKLTKLTHLALHINQLKS-IPMGVFDNLKSLTHIYLF 120
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 191
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 192 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 191
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 192 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 191
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
L L KL+ L L + + ++G L+VL LF
Sbjct: 192 ---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 226
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 214 LSEIP-----TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN----ISLRKLPS 263
LS +P P+L TL + N +E I D FQ+ ++L+ L L N + L +PS
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
NGI ++ + P+L +L LG N+I +IT ++ L LSL N +P
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP------ 168
Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
L L KL+ L L + + + G L+VL LF
Sbjct: 169 ---LACLTKLQNLYLSKNHISDL---RALCGLKNLDVLELFS 204
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 214 LSEIP-----TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN----ISLRKLPS 263
LS +P P+L TL + N +E I D FQ+ ++L+ L L N + L +PS
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|B Chain B, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|C Chain C, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|D Chain D, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|E Chain E, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|F Chain F, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|G Chain G, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|H Chain H, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|I Chain I, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|J Chain J, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|K Chain K, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|L Chain L, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
Length = 515
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 240 FFQSMSTLRVLSLRINISL-RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS 298
+FQS ++ ++N +L ++ + I G+P+ L LE++ + ++D T L + HQ I
Sbjct: 19 YFQS----NAMNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHII 74
Query: 299 GFSKLEVLRLFGCGFWV 315
G +V +++ F V
Sbjct: 75 G---SKVGKIYTTAFDV 88
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPL 331
+K EK + N+ Y F ++ P +I+ + L L GC + + + G+ C+D
Sbjct: 390 VKEPEKGLWENIVYLDFRALYPSIIITHNVSPDTLNLEGCKNYDIAPQVGHKFCKDIPGF 449
Query: 332 MKELLG 337
+ LLG
Sbjct: 450 IPSLLG 455
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPL 331
+K EK + ++ Y F+++ P +I+ + L L GC + + + G+ C+D
Sbjct: 390 VKEPEKGLWDDIVYLDFIALYPSIIITHNVSPDTLNLEGCKNYDIAPQVGHKFCKDIPGF 449
Query: 332 MKELLG 337
+ LLG
Sbjct: 450 IPSLLG 455
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPL 331
+K EK + N+ Y + S+ P +I+ + L L GC + + + G+ C+D
Sbjct: 390 VKEPEKGLWENIVYLDYKSLYPSIIITHNVSPDTLNLEGCKNYDIAPQVGHKFCKDIPGF 449
Query: 332 MKELLG 337
+ LLG
Sbjct: 450 IPSLLG 455
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGF 240
+ A +E + F++ E + + N +R + P+L L L N+++ + DG
Sbjct: 154 LRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Query: 241 FQSMSTLRVLSLRIN 255
F +++L+ + L N
Sbjct: 214 FDRLTSLQKIWLHTN 228
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 173 TVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIP----TCPRLVTLLL 228
T+D NF L + PK + + L NG +IP C LV+L L
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPK----NTLQELYLQNNGFTG--KIPPTLSNCSELVSLHL 425
Query: 229 GGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG-LPQELKALEKLRYLNLDYTR 287
N + S+S LR L L +N+ + G +PQEL ++ L L LD+
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNM--------LEGEIPQELMYVKTLETLILDFND 477
Query: 288 FLSIIPHQL 296
IP L
Sbjct: 478 LTGEIPSGL 486
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 173 TVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIP----TCPRLVTLLL 228
T+D NF L + PK + + L NG +IP C LV+L L
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPK----NTLQELYLQNNGFTG--KIPPTLSNCSELVSLHL 422
Query: 229 GGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG-LPQELKALEKLRYLNLDYTR 287
N + S+S LR L L +N+ + G +PQEL ++ L L LD+
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNM--------LEGEIPQELMYVKTLETLILDFND 474
Query: 288 FLSIIPHQL 296
IP L
Sbjct: 475 LTGEIPSGL 483
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338
N+ Y F S+ P +I+ + L GC + V E G+ C+D + LLG
Sbjct: 399 NIVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPEVGHKFCKDFPGFIPSLLGD 455
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 186 GVELTEAPK-FEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQ 242
G + T PK ++ + L N I +LS +L+TL+L NR+ I F
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 243 SMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278
+ +LR+LSL N + +P G +L AL L
Sbjct: 100 GLKSLRLLSLHGN-DISVVPEGAF---NDLSALSHL 131
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 223 LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLN 282
L TL L NR++ I G F +S L +++IS K+ + + Q+L L+ L +
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLT----KLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 283 LDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE 319
D L I H+ SG + LE L L C + E
Sbjct: 138 ND----LVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 165 EMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRS--LSEIPTCPR 222
E S + D + N+L + +LT PK + E + L N I++ L ++ +
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSK 218
Query: 223 LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
L L LG N+I I +G + TLR L L N L ++P+G+ L
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRVPAGLPDL 263
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLL---LGGNRIEEITDGFFQSMSTLRVLSLRI 254
+EG + + + +L EIP L+ L L GN + I G FQ + L+ L +
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM-- 238
Query: 255 NISLRKLPSGIRGLPQE-LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
+ S I+ + + L+ L +NL + L+++PH L + LE + L
Sbjct: 239 ------IQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL 286
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 178 EQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEE 235
QNFL ++ FE + + + L N IR+L + P L L L N+++
Sbjct: 331 SQNFLGS-----IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 236 ITDGFFQSMSTLRVLSLRIN 255
+ DG F +++L+ + L N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 28/114 (24%)
Query: 223 LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP-------------------- 262
L TL L N + + S++ LR LS+R L +LP
Sbjct: 129 LETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 263 -----SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
+GIR LP + L+ L+ L + + ++ P I KLE L L GC
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGC 239
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338
N+ Y F S+ P +I+ + L GC + V + G+ C+D + LLG
Sbjct: 399 NIVYLDFRSLYPSIIITHNVSPDTLNREGCEEYDVAPQVGHKFCKDFPGFIPSLLGD 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,022,120
Number of Sequences: 62578
Number of extensions: 633057
Number of successful extensions: 1657
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1589
Number of HSP's gapped (non-prelim): 90
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)