Query 008415
Match_columns 566
No_of_seqs 399 out of 3629
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 11:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-55 2.8E-60 479.5 21.0 525 1-558 306-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.7E-39 1.4E-43 367.4 25.5 466 7-525 346-911 (1153)
3 KOG0444 Cytoskeletal regulator 99.8 7.6E-23 1.7E-27 203.6 -2.4 277 198-528 77-359 (1255)
4 PLN03210 Resistant to P. syrin 99.8 7.5E-20 1.6E-24 210.7 19.0 297 199-524 589-947 (1153)
5 PLN00113 leucine-rich repeat r 99.8 1.6E-19 3.4E-24 207.5 16.7 307 197-540 116-436 (968)
6 PLN00113 leucine-rich repeat r 99.8 8.2E-19 1.8E-23 201.6 16.8 305 196-539 137-459 (968)
7 KOG4194 Membrane glycoprotein 99.7 3.6E-19 7.8E-24 176.6 3.2 322 185-544 110-460 (873)
8 KOG0444 Cytoskeletal regulator 99.7 4E-20 8.7E-25 184.4 -6.3 295 181-530 36-338 (1255)
9 KOG4194 Membrane glycoprotein 99.7 1.7E-18 3.7E-23 171.8 -1.3 295 199-543 173-482 (873)
10 KOG0472 Leucine-rich repeat pr 99.6 9.4E-18 2E-22 159.7 -2.0 308 187-525 193-544 (565)
11 KOG0472 Leucine-rich repeat pr 99.6 3.8E-17 8.3E-22 155.6 -6.5 206 186-404 77-310 (565)
12 KOG0618 Serine/threonine phosp 99.5 2.7E-16 5.9E-21 164.4 -3.4 69 195-265 64-133 (1081)
13 PRK15387 E3 ubiquitin-protein 99.5 9E-14 2E-18 149.7 15.3 253 179-517 203-455 (788)
14 KOG4658 Apoptotic ATPase [Sign 99.5 5.7E-14 1.2E-18 154.5 9.0 312 181-526 527-866 (889)
15 PRK15387 E3 ubiquitin-protein 99.4 7E-13 1.5E-17 142.9 13.1 254 200-542 202-455 (788)
16 KOG0617 Ras suppressor protein 99.3 3.4E-14 7.3E-19 120.4 -3.3 156 190-374 24-182 (264)
17 PRK15370 E3 ubiquitin-protein 99.3 3.7E-12 8.1E-17 138.2 11.2 93 202-312 181-273 (754)
18 PRK15370 E3 ubiquitin-protein 99.3 5.8E-12 1.3E-16 136.7 11.9 242 182-493 183-425 (754)
19 KOG0618 Serine/threonine phosp 99.3 1E-13 2.2E-18 145.4 -1.8 106 199-315 219-324 (1081)
20 KOG0617 Ras suppressor protein 99.3 2.7E-14 5.9E-19 120.9 -5.6 164 211-405 23-187 (264)
21 KOG4237 Extracellular matrix p 99.2 1.5E-12 3.3E-17 124.4 -0.6 127 180-315 49-178 (498)
22 PF14580 LRR_9: Leucine-rich r 99.1 8E-11 1.7E-15 104.4 4.5 134 193-347 13-148 (175)
23 cd00116 LRR_RI Leucine-rich re 99.0 1.1E-10 2.4E-15 116.8 0.6 90 220-313 22-120 (319)
24 PF00931 NB-ARC: NB-ARC domain 99.0 1.1E-10 2.4E-15 115.0 0.3 115 6-134 151-286 (287)
25 KOG4237 Extracellular matrix p 98.9 2.4E-10 5.2E-15 109.6 -0.8 123 182-312 72-199 (498)
26 PF14580 LRR_9: Leucine-rich r 98.9 3.4E-09 7.3E-14 94.1 5.8 125 182-313 24-152 (175)
27 cd00116 LRR_RI Leucine-rich re 98.9 1.2E-09 2.7E-14 109.2 3.4 182 199-402 23-232 (319)
28 KOG3207 Beta-tubulin folding c 98.7 4.8E-09 1.1E-13 102.1 1.4 68 387-457 267-337 (505)
29 PF13855 LRR_8: Leucine rich r 98.6 1.9E-08 4.1E-13 73.3 3.2 58 222-286 2-59 (61)
30 PF13855 LRR_8: Leucine rich r 98.6 2.4E-08 5.3E-13 72.7 3.5 61 245-313 1-61 (61)
31 KOG4341 F-box protein containi 98.6 1.3E-09 2.9E-14 105.4 -5.2 292 199-524 138-443 (483)
32 KOG4341 F-box protein containi 98.6 1.5E-09 3.3E-14 105.0 -5.0 286 221-543 138-440 (483)
33 KOG1259 Nischarin, modulator o 98.5 1E-08 2.2E-13 95.1 -1.2 130 195-350 280-410 (490)
34 KOG2120 SCF ubiquitin ligase, 98.5 2.2E-09 4.9E-14 99.3 -6.3 159 278-459 187-351 (419)
35 KOG3207 Beta-tubulin folding c 98.5 2.6E-08 5.6E-13 97.2 0.3 185 218-458 118-313 (505)
36 KOG0532 Leucine-rich repeat (L 98.5 4.8E-09 1E-13 105.4 -5.5 171 200-405 76-248 (722)
37 COG4886 Leucine-rich repeat (L 98.4 1.8E-07 3.9E-12 96.5 5.2 101 200-311 117-219 (394)
38 COG4886 Leucine-rich repeat (L 98.4 3.5E-07 7.7E-12 94.3 5.6 101 204-315 98-200 (394)
39 KOG1259 Nischarin, modulator o 98.2 2.2E-07 4.8E-12 86.4 0.2 106 198-315 306-413 (490)
40 KOG2120 SCF ubiquitin ligase, 98.2 5E-08 1.1E-12 90.6 -4.3 184 221-459 185-376 (419)
41 KOG0532 Leucine-rich repeat (L 98.2 4.7E-07 1E-11 91.4 1.2 113 198-315 120-248 (722)
42 PLN03150 hypothetical protein; 98.1 6.3E-06 1.4E-10 89.5 8.5 84 222-315 419-504 (623)
43 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 55.4 3.4 20 273-293 21-40 (44)
44 KOG0531 Protein phosphatase 1, 98.0 6.6E-07 1.4E-11 92.6 -1.7 102 200-314 73-175 (414)
45 KOG2982 Uncharacterized conser 98.0 1.5E-06 3.2E-11 81.0 0.5 65 390-462 198-265 (418)
46 PLN03150 hypothetical protein; 98.0 1.6E-05 3.5E-10 86.4 8.3 106 200-314 419-528 (623)
47 PF12799 LRR_4: Leucine Rich r 98.0 9.7E-06 2.1E-10 54.1 4.0 41 221-263 1-41 (44)
48 KOG3665 ZYG-1-like serine/thre 98.0 1.7E-06 3.7E-11 93.7 0.3 59 273-347 170-228 (699)
49 KOG1909 Ran GTPase-activating 97.9 4.5E-06 9.8E-11 79.7 1.6 94 386-494 208-309 (382)
50 KOG0531 Protein phosphatase 1, 97.8 2.7E-06 5.8E-11 88.1 -1.0 108 195-315 91-200 (414)
51 PRK15386 type III secretion pr 97.8 3.9E-05 8.5E-10 76.8 6.9 68 365-454 52-120 (426)
52 KOG1859 Leucine-rich repeat pr 97.7 2.7E-06 5.8E-11 88.3 -3.0 101 221-349 164-264 (1096)
53 KOG1909 Ran GTPase-activating 97.7 6E-06 1.3E-10 78.8 -0.7 258 217-518 26-309 (382)
54 PRK15386 type III secretion pr 97.7 7.8E-05 1.7E-09 74.7 6.9 64 197-265 50-114 (426)
55 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.2E-11 90.2 -7.7 104 198-314 163-267 (1096)
56 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 64.5 4.6 107 200-313 43-152 (233)
57 KOG1644 U2-associated snRNP A' 97.4 0.00021 4.5E-09 63.4 4.4 109 220-349 41-150 (233)
58 KOG4579 Leucine-rich repeat (L 97.3 4.5E-05 9.7E-10 63.2 -0.7 87 199-295 53-141 (177)
59 KOG1947 Leucine rich repeat pr 97.1 9E-05 2E-09 78.6 -0.8 117 219-350 186-306 (482)
60 KOG4579 Leucine-rich repeat (L 97.1 6.9E-05 1.5E-09 62.1 -1.5 105 201-315 29-137 (177)
61 KOG2982 Uncharacterized conser 97.0 0.00046 9.9E-09 64.8 3.0 39 275-314 70-110 (418)
62 KOG3665 ZYG-1-like serine/thre 97.0 0.00066 1.4E-08 73.9 4.4 132 199-350 122-261 (699)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00061 1.3E-08 63.1 2.6 108 197-312 41-154 (260)
64 KOG2123 Uncharacterized conser 96.8 0.00014 3.1E-09 67.5 -1.9 80 222-313 20-100 (388)
65 KOG2123 Uncharacterized conser 96.6 0.00016 3.4E-09 67.2 -3.3 103 198-308 18-124 (388)
66 KOG1947 Leucine rich repeat pr 96.5 0.0004 8.7E-09 73.6 -1.6 119 241-378 184-307 (482)
67 KOG2739 Leucine-rich acidic nu 96.0 0.0039 8.4E-08 57.9 2.2 88 218-315 40-130 (260)
68 PF00560 LRR_1: Leucine Rich R 95.5 0.0054 1.2E-07 33.9 0.6 17 278-295 2-18 (22)
69 COG5238 RNA1 Ran GTPase-activa 94.4 0.035 7.7E-07 51.9 3.2 96 219-315 28-134 (388)
70 PF13504 LRR_7: Leucine rich r 94.3 0.026 5.5E-07 28.9 1.2 9 247-255 3-11 (17)
71 PF00560 LRR_1: Leucine Rich R 94.2 0.019 4.1E-07 31.7 0.6 18 246-264 1-18 (22)
72 PF13504 LRR_7: Leucine rich r 94.1 0.028 6E-07 28.8 1.1 17 276-293 1-17 (17)
73 PF13306 LRR_5: Leucine rich r 93.7 0.19 4E-06 42.3 6.2 81 218-309 9-89 (129)
74 PF13306 LRR_5: Leucine rich r 93.2 0.26 5.6E-06 41.4 6.3 99 199-310 12-112 (129)
75 KOG3864 Uncharacterized conser 92.9 0.016 3.6E-07 51.7 -1.6 35 422-456 150-186 (221)
76 smart00369 LRR_TYP Leucine-ric 92.2 0.12 2.6E-06 29.8 2.0 20 275-295 1-20 (26)
77 smart00370 LRR Leucine-rich re 92.2 0.12 2.6E-06 29.8 2.0 20 275-295 1-20 (26)
78 COG5238 RNA1 Ran GTPase-activa 91.7 0.21 4.5E-06 46.9 3.9 111 198-313 29-169 (388)
79 KOG0473 Leucine-rich repeat pr 90.6 0.015 3.1E-07 53.1 -4.5 86 217-313 38-123 (326)
80 smart00370 LRR Leucine-rich re 89.6 0.27 5.7E-06 28.3 1.8 21 244-265 1-21 (26)
81 smart00369 LRR_TYP Leucine-ric 89.6 0.27 5.7E-06 28.3 1.8 21 244-265 1-21 (26)
82 KOG3864 Uncharacterized conser 88.4 0.081 1.7E-06 47.4 -1.5 42 390-439 150-192 (221)
83 KOG0473 Leucine-rich repeat pr 82.8 0.05 1.1E-06 49.7 -5.5 84 195-287 38-122 (326)
84 smart00367 LRR_CC Leucine-rich 81.9 1 2.2E-05 25.8 1.6 17 506-522 1-17 (26)
85 smart00364 LRR_BAC Leucine-ric 73.1 2.4 5.2E-05 24.4 1.3 17 246-263 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 59.8 7.8 0.00017 22.3 1.7 14 245-259 2-15 (26)
87 PF13516 LRR_6: Leucine Rich r 57.1 5.2 0.00011 22.2 0.7 10 246-255 3-12 (24)
88 smart00368 LRR_RI Leucine rich 48.5 14 0.00031 21.5 1.7 14 245-259 2-15 (28)
89 cd04443 DEP_GPR155 DEP (Dishev 43.8 37 0.00081 26.0 3.8 43 110-152 25-68 (83)
90 PF12777 MT: Microtubule-bindi 42.1 59 0.0013 32.7 6.0 50 70-126 292-342 (344)
91 PF07820 TraC: TraC-like prote 38.8 1.8E+02 0.004 22.6 6.7 48 38-85 7-59 (92)
92 cd04441 DEP_2_DEP6 DEP (Dishev 37.8 42 0.0009 25.9 3.2 42 111-152 28-70 (85)
93 cd04440 DEP_2_P-Rex DEP (Dishe 35.2 56 0.0012 25.7 3.5 42 111-152 33-75 (93)
94 PF02022 Integrase_Zn: Integra 32.7 42 0.00091 21.7 2.1 29 31-59 8-36 (40)
95 cd04448 DEP_PIKfyve DEP (Dishe 31.4 76 0.0017 24.2 3.7 43 110-152 23-66 (81)
96 PF00610 DEP: Domain found in 31.1 60 0.0013 23.9 3.1 43 110-152 12-57 (74)
97 cd04442 DEP_1_DEP6 DEP (Dishev 26.4 87 0.0019 24.0 3.2 43 110-152 23-66 (82)
98 cd04444 DEP_PLEK2 DEP (Disheve 25.2 1E+02 0.0022 25.0 3.6 38 115-152 32-69 (109)
99 cd04439 DEP_1_P-Rex DEP (Dishe 23.3 1.1E+02 0.0024 23.3 3.3 43 110-152 23-66 (81)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-55 Score=479.55 Aligned_cols=525 Identities=32% Similarity=0.463 Sum_probs=401.2
Q ss_pred CCCceeecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHH--HhccccccCcchhhHH
Q 008415 1 MGNLISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIE--EQRPRTRRTNQVAGWL 75 (566)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la--~~~g~l~~~~~~~~W~ 75 (566)
||.+..+.+.|-..++||++|.+.|+.... ... +++.++|++|+++| |+| ++||.|+.|+++++|+
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~--------~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSH--------PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccc-ccc--------ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 788889999998889999999999975421 111 12678888889888 888 6689999999999999
Q ss_pred HHHHHHHHh--------------hHHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCccccc---
Q 008415 76 EDVQKLETE--------------YTELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDD--- 135 (566)
Q Consensus 76 ~~~~~l~~~--------------~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~--- 135 (566)
++.+.+.+. +.+++|++||+++|.|| +|| |+||| |++++||.+||||||+.+...
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF-Lyc----alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~ 451 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF-LYC----ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET 451 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH-Hhh----ccCCcccccchHHHHHHHHhccCcCccccccc
Confidence 999887653 23577899999999999 999 99999 999999999999999988442
Q ss_pred ----HhHHHHHHHHcccccccC----CcceecchhHHHHHHHHhcccCcccceEEEecCCccccCCCccccccccEEEee
Q 008415 136 ----GCDFIDDLLQACLLEEEG----DDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLM 207 (566)
Q Consensus 136 ----~~~~~~~L~~r~ll~~~~----~~~~~mHdli~dl~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~ 207 (566)
|++|+.+|++++|++.++ ..+|+|||+|||||.|+|++.+..+++.++..+.+....|+...+..+|++++.
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 999999999999999973 478999999999999999988887778777777677778889999999999999
Q ss_pred cCCcccccCCCCCCCccEEEecCCc--ccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccC
Q 008415 208 GNGIRSLSEIPTCPRLVTLLLGGNR--IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDY 285 (566)
Q Consensus 208 ~~~~~~l~~~~~~~~Lr~L~l~~~~--l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~ 285 (566)
++.+..++....++.|++|.+.++. +..++..+|..|+.||+|||++|..+.+||+ +|++|.|||||++++
T Consensus 532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-------~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-------SIGELVHLRYLDLSD 604 (889)
T ss_pred ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-------HHhhhhhhhcccccC
Confidence 9999999988999999999999995 7889988899999999999999867765555 569999999999999
Q ss_pred cccCCccchhhhcCCCCCcEEEecCCCCccc----------ccccc--cccccCccchHhhhcCCCCCceEEEEEcCccc
Q 008415 286 TRFLSIIPHQLISGFSKLEVLRLFGCGFWVV----------TEEEG--NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG 353 (566)
Q Consensus 286 ~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~ 353 (566)
+ .++.+|.+ +++|+.|.+|++..+..... ++.+. ......+...+.++.+|++|+.++++..+...
T Consensus 605 t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 605 T-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred C-CccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence 8 88899988 89999999998887664331 00000 00112234455566666666666665433322
Q ss_pred hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCcc-CCCcccEEecc
Q 008415 354 VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQS-GFRSLNTVSVH 431 (566)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~-~l~~L~~L~L~ 431 (566)
++.+.....+.+..+.+.+.+ + .......++..+.+|+.|.|.+|. .+. ...+.. ..... .|+++.++.+.
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~-~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~---~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEG-C--SKRTLISSLGSLGNLEELSILDCGISEI-VIEWEE---SLIVLLCFPNLSKVSIL 755 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcc-c--ccceeecccccccCcceEEEEcCCCchh-hccccc---ccchhhhHHHHHHHHhh
Confidence 233332222222333333322 1 123334567888999999999999 442 222221 01112 27789999999
Q ss_pred cCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCcccccccee-eccccccccccCCCCCCCCCcc
Q 008415 432 YCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYL-SISWGTNLKSVYPNPLPFPKLK 510 (566)
Q Consensus 432 ~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L-~L~~~~~L~~l~~~~~~~p~L~ 510 (566)
+|...+++.|....|+|+.|.+..|..++.+++....... .......|+++..+ .+.+.+.+.++......++.|+
T Consensus 756 ~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~---l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~ 832 (889)
T KOG4658|consen 756 NCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE---LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLE 832 (889)
T ss_pred ccccccccchhhccCcccEEEEecccccccCCCHHHHhhh---cccEEecccccccceeeecCCCCceeEecccCccchh
Confidence 9999999999889999999999999999987753322110 11124567777888 5888888888877778889999
Q ss_pred EEeecCCCCCCCCCCCCcccc---CCcEEEechhhhhhcccccchhhhhhc
Q 008415 511 KIDVCHCPQLKKLPLNSSSAK---ERRVVIEGEKKWWEELQWEDQATQNAF 558 (566)
Q Consensus 511 ~L~i~~C~~L~~lP~~~~~~l---~~L~i~~~~~~~~~~l~~~~~~~~~~~ 558 (566)
.+.+..||++..+|....... ....+..-+.+|.+.+.|++++++..|
T Consensus 833 ~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 833 ELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred heehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 999999999999998765541 133444445668899999999999888
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.7e-39 Score=367.43 Aligned_cols=466 Identities=16% Similarity=0.167 Sum_probs=278.8
Q ss_pred ecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHH
Q 008415 7 TFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKL 81 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l 81 (566)
..+...-.+++|++|+++||....+.+ ++.+++++|+++| |+|+ +|+.|+ +++.++|+.+++++
T Consensus 346 ~~v~~l~~~ea~~LF~~~Af~~~~~~~----------~~~~l~~~iv~~c~GLPLAl~vlgs~L~-~k~~~~W~~~l~~L 414 (1153)
T PLN03210 346 YEVCLPSNELALEMFCRSAFKKNSPPD----------GFMELASEVALRAGNLPLGLNVLGSYLR-GRDKEDWMDMLPRL 414 (1153)
T ss_pred EEecCCCHHHHHHHHHHHhcCCCCCcH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 333332347899999999986543332 3456677777777 8884 456554 56889999999998
Q ss_pred HH-------hhHHHhhhchHH-HHHHHhcccccCccccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 82 ET-------EYTELERDRAQE-MDRLCLGGLCSKNFVSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 82 ~~-------~~~~~~~~~L~~-~lK~Cf~lyc~~~~~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
+. .+.+++|++|++ ..|.|| +|| |+||. .+.+ .+..|.|.+.+... ..++.|+++||++..
T Consensus 415 ~~~~~~~I~~~L~~SYd~L~~~~~k~~F-l~i----a~ff~~~~~~-~v~~~l~~~~~~~~----~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 415 RNGLDGKIEKTLRVSYDGLNNKKDKAIF-RHI----ACLFNGEKVN-DIKLLLANSDLDVN----IGLKNLVDKSLIHVR 484 (1153)
T ss_pred HhCccHHHHHHHHHhhhccCccchhhhh-hee----hhhcCCCCHH-HHHHHHHhcCCCch----hChHHHHhcCCEEEc
Confidence 86 345788999986 599999 999 99999 5554 46777877655433 339999999999986
Q ss_pred CCcceecchhHHHHHHHHhcccC--cccceEEEecCCccccCCCccccccccEEEeecCCccccc----CCCCCCCccEE
Q 008415 153 GDDHVKMHDMIREMSLWIACTVD--KEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS----EIPTCPRLVTL 226 (566)
Q Consensus 153 ~~~~~~mHdli~dl~~~i~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~----~~~~~~~Lr~L 226 (566)
...++|||++||||++++++++ +.++.+++...+....+....+..+++.+++....+.++. .+..+++|+.|
T Consensus 485 -~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 485 -EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred -CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence 4679999999999999998775 2345566654322222222233345666665544443321 23455555555
Q ss_pred EecCCcc-------cccchHHHhcC-ccCCEEecCCCCCCccccccc---------------cccCcchhccccCcEecc
Q 008415 227 LLGGNRI-------EEITDGFFQSM-STLRVLSLRINISLRKLPSGI---------------RGLPQELKALEKLRYLNL 283 (566)
Q Consensus 227 ~l~~~~l-------~~lp~~~~~~l-~~Lr~L~L~~~~~i~~lp~~i---------------~~LP~~i~~L~~L~~L~L 283 (566)
.+..+.. ..+|.. +..+ .+||+|++.++ .++.+|..+ ..+|.++..+++|++|++
T Consensus 564 ~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L 641 (1153)
T PLN03210 564 KFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641 (1153)
T ss_pred EEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEEC
Confidence 5543311 123444 2222 34555555555 555555433 345555678888888888
Q ss_pred cCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcc
Q 008415 284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKL 363 (566)
Q Consensus 284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~ 363 (566)
++|..++.+|. ++.+++|++|++.+|.... ..+..++++++|+.|+++.+. .+..++... .
T Consensus 642 s~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~--------------~lp~si~~L~~L~~L~L~~c~--~L~~Lp~~i-~ 702 (1153)
T PLN03210 642 RGSKNLKEIPD--LSMATNLETLKLSDCSSLV--------------ELPSSIQYLNKLEDLDMSRCE--NLEILPTGI-N 702 (1153)
T ss_pred CCCCCcCcCCc--cccCCcccEEEecCCCCcc--------------ccchhhhccCCCCEEeCCCCC--CcCccCCcC-C
Confidence 88767788886 7888888888888876654 355566777777777776442 222222222 2
Q ss_pred cccceEEEEecccCCCCCee------------------eeccccc-------------------------------cCcc
Q 008415 364 VSITQSVLVKSGVHTSPPFN------------------VLHLAYM-------------------------------ENLQ 394 (566)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~------------------~~~l~~~-------------------------------~~L~ 394 (566)
+++|+.|.+++ |.....+. ++....+ ++|+
T Consensus 703 l~sL~~L~Lsg-c~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 703 LKSLYRLNLSG-CSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCCCEEeCCC-CCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 34555555555 43211110 0000011 2333
Q ss_pred eEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCccccccccc------
Q 008415 395 KFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDK------ 467 (566)
Q Consensus 395 ~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~------ 467 (566)
.|++++|. +..+| .....+++|+.|+|++|+.++.+|....+++|+.|++++|..+..++....
T Consensus 782 ~L~Ls~n~~l~~lP---------~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 782 RLFLSDIPSLVELP---------SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred heeCCCCCCccccC---------hhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence 33333333 22221 112345667777777766666666544566777777777666554432100
Q ss_pred -ccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 008415 468 -LRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL 525 (566)
Q Consensus 468 -~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~ 525 (566)
..+.-..+|..+..+++|+.|++.+|++|+.++.....+++|+.+++.+|++|+.++.
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 0000011344455667777777777777777766666667777777777777765543
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=7.6e-23 Score=203.63 Aligned_cols=277 Identities=19% Similarity=0.230 Sum_probs=200.6
Q ss_pred cccccEEEeecCCccc--cc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 198 WEGAKRVSLMGNGIRS--LS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~--l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
+..+|.+.+..|+++. +| ++.++..|.+|+++.|++.+.|.. +..-+++-+|+||+| +|+.+|.++ +.+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~l------fin 148 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSL------FIN 148 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchH------HHh
Confidence 3455555555555543 33 457788899999999999999988 788899999999999 999999887 889
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV 354 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~ 354 (566)
|+.|-+|||++| ++..+|+. +.+|.+|++|.+++|+... ..+..+.+++.|+.|.++... ..+
T Consensus 149 LtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h--------------fQLrQLPsmtsL~vLhms~Tq-RTl 211 (1255)
T KOG0444|consen 149 LTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH--------------FQLRQLPSMTSLSVLHMSNTQ-RTL 211 (1255)
T ss_pred hHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH--------------HHHhcCccchhhhhhhccccc-chh
Confidence 999999999999 89999999 9999999999999998865 677888888899999888532 345
Q ss_pred hccccCCcccccceEEEEecccCCCCCeeee--ccccccCcceEEEeccccceeeecccccccccCccCCCcccEEeccc
Q 008415 355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVL--HLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHY 432 (566)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 432 (566)
.+++.++..+.+|..++++. +.+... .+-.+++|+.|++++|.++.+.. ......+|++|+++.
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~-----N~Lp~vPecly~l~~LrrLNLS~N~iteL~~---------~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSE-----NNLPIVPECLYKLRNLRRLNLSGNKITELNM---------TEGEWENLETLNLSR 277 (1255)
T ss_pred hcCCCchhhhhhhhhccccc-----cCCCcchHHHhhhhhhheeccCcCceeeeec---------cHHHHhhhhhhcccc
Confidence 66677777778888888885 333222 36678899999999999555432 223557888898888
Q ss_pred CcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccE
Q 008415 433 CRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKK 511 (566)
Q Consensus 433 c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~ 511 (566)
+.++.+|. +..++.|+.|.+.++.. ..-+ +|+.++.+.+|+.+...+ .+|+-.|.+...++.|+.
T Consensus 278 -NQLt~LP~avcKL~kL~kLy~n~NkL-~FeG-----------iPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 278 -NQLTVLPDAVCKLTKLTKLYANNNKL-TFEG-----------IPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQK 343 (1255)
T ss_pred -chhccchHHHhhhHHHHHHHhccCcc-cccC-----------CccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHH
Confidence 57777776 78888888888866532 2111 344555555666655554 345555555555555555
Q ss_pred EeecCCCCCCCCCCCCc
Q 008415 512 IDVCHCPQLKKLPLNSS 528 (566)
Q Consensus 512 L~i~~C~~L~~lP~~~~ 528 (566)
|.+ +|+.|..||+++.
T Consensus 344 L~L-~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 344 LKL-DHNRLITLPEAIH 359 (1255)
T ss_pred hcc-cccceeechhhhh
Confidence 555 3355555555543
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=7.5e-20 Score=210.67 Aligned_cols=297 Identities=20% Similarity=0.297 Sum_probs=163.4
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc-------------
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI------------- 265 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i------------- 265 (566)
.++|.|.+.++.++.+|....+.+|+.|++.++.+..+|.. ++.+++|++|+|+++..++.+|..-
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 35677777777776676655667777777777777777666 5667777777777663455555310
Q ss_pred ---cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccccc-ccc-----cccccCccchHhhhc
Q 008415 266 ---RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTE-EEG-----NVLCEDAEPLMKELL 336 (566)
Q Consensus 266 ---~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~-~~~-----~~~~~~~~~~~~~l~ 336 (566)
..+|.++++|++|++|++++|..++.+|.. + ++++|++|++.+|....... ... .+........+. ..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~-~~ 744 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS-NL 744 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc-cc
Confidence 234444556666666666665555566653 3 55666666666554322100 000 000000000000 01
Q ss_pred CCCCCceEEEEEcCccch----hcccc-CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecc
Q 008415 337 GSKHLNVLSWTFRSSLGV----QNFLK-YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDS 410 (566)
Q Consensus 337 ~L~~L~~L~i~~~~~~~~----~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~ 410 (566)
.+++|+.|.+.......+ ..+.. ......+|+.|.+++ +.....+. ..+..+++|+.|++.+|. ++.+|..
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~-n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~- 821 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD-IPSLVELP-SSIQNLHKLEHLEIENCINLETLPTG- 821 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCC-CCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCC-
Confidence 223333333321100000 00000 001124566666665 43222111 135677788888888877 6665422
Q ss_pred cccccccCccCCCcccEEecccCcC--------------------CCCCch-hhccCCcceEeEecccCccccccccccc
Q 008415 411 TEEVKKLFQSGFRSLNTVSVHYCRK--------------------AKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLR 469 (566)
Q Consensus 411 ~~~~~~~~~~~l~~L~~L~L~~c~~--------------------l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~ 469 (566)
..+++|++|++++|.. ++.+|. ++.+++|+.|++.+|+.++.++
T Consensus 822 ---------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~------ 886 (1153)
T PLN03210 822 ---------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS------ 886 (1153)
T ss_pred ---------CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC------
Confidence 1244455555554443 344443 6778899999999999888755
Q ss_pred ccccccCCCCccccccceeeccccccccccCCCC-------------CCCCCccEEeecCCCCCCCCC
Q 008415 470 DISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-------------LPFPKLKKIDVCHCPQLKKLP 524 (566)
Q Consensus 470 ~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-------------~~~p~L~~L~i~~C~~L~~lP 524 (566)
.....+++|+.|.+.+|++|+.++... ..+|....+.+.+|.+|..-+
T Consensus 887 -------~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 887 -------LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred -------cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 356788999999999999998765321 235566777888998887644
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.6e-19 Score=207.48 Aligned_cols=307 Identities=17% Similarity=0.121 Sum_probs=154.8
Q ss_pred ccccccEEEeecCCcccccCCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
.+.++|+|++++|.+........+++|++|++++|.+. .+|.. ++++++|++|+|++| .+. ..+|..++++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~------~~~p~~~~~l 187 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLV------GKIPNSLTNL 187 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-ccc------ccCChhhhhC
Confidence 34566666666666554323345667777777777665 45555 677777777777777 554 2334445777
Q ss_pred ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415 276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ 355 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~ 355 (566)
++|++|++++|.....+|.. ++++++|++|++.+|.... ..+..++++++|+.|+++.+....
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--------------~~p~~l~~l~~L~~L~L~~n~l~~-- 250 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG--------------EIPYEIGGLTSLNHLDLVYNNLTG-- 250 (968)
T ss_pred cCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC--------------cCChhHhcCCCCCEEECcCceecc--
Confidence 77777777777333345665 6777777777777666543 344556666666666665443211
Q ss_pred ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCc
Q 008415 356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR 434 (566)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 434 (566)
..+.....+++|+.|.+++ +.- .......+..+++|+.|++++|. ...++. + ...+++|+.|+++++.
T Consensus 251 ~~p~~l~~l~~L~~L~L~~-n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-------~--~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQ-NKL-SGPIPPSIFSLQKLISLDLSDNSLSGEIPE-------L--VIQLQNLEILHLFSNN 319 (968)
T ss_pred ccChhHhCCCCCCEEECcC-Cee-eccCchhHhhccCcCEEECcCCeeccCCCh-------h--HcCCCCCcEEECCCCc
Confidence 1112222334555665554 210 00111124445555666665555 222110 0 1234445555554443
Q ss_pred CCCCCch-hhccCCcceEeEecccCccccccccc-ccc----------cccccCCCCccccccceeeccccccccccCCC
Q 008415 435 KAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDK-LRD----------ISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN 502 (566)
Q Consensus 435 ~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~-~~~----------~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~ 502 (566)
....+|. +..+++|+.|++++|.....++..-. ... ....+|..+..+++|+.|.+.++.-...++..
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 3222222 44444555555544432221111000 000 00001223444566666666665433344444
Q ss_pred CCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEech
Q 008415 503 PLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE 540 (566)
Q Consensus 503 ~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~ 540 (566)
...+++|+.|++.+|.--..+|..+..+ +.|..++..
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls 436 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDIS 436 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcC-CCCCEEECc
Confidence 5567888888888875434566655444 455554443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=8.2e-19 Score=201.58 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=206.5
Q ss_pred cccccccEEEeecCCccc-cc-CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 196 EEWEGAKRVSLMGNGIRS-LS-EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 196 ~~~~~lr~Lsl~~~~~~~-l~-~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
....++++|++.+|.+.. +| .+..+++|++|++++|.+. .+|.. ++++++|++|+|++| .+. ..+|..+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~------~~~p~~l 208 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLV------GQIPREL 208 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCc------CcCChHH
Confidence 345789999999998763 44 3678999999999999875 56766 899999999999999 765 3455667
Q ss_pred hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCcc
Q 008415 273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSL 352 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~ 352 (566)
+++++|++|++++|.....+|.. ++++++|++|++.+|.... ..+..++++++|+.|+++.+...
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--------------~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG--------------PIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc--------------ccChhHhCCCCCCEEECcCCeee
Confidence 99999999999999433467877 8999999999999887754 45667888888888888755322
Q ss_pred chhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecc
Q 008415 353 GVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVH 431 (566)
Q Consensus 353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 431 (566)
. ..+.....+.+|+.|++++ +.- .......+..+++|+.|++.+|. ...++ .....+++|+.|+++
T Consensus 274 ~--~~p~~l~~l~~L~~L~Ls~-n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 274 G--PIPPSIFSLQKLISLDLSD-NSL-SGEIPELVIQLQNLEILHLFSNNFTGKIP---------VALTSLPRLQVLQLW 340 (968)
T ss_pred c--cCchhHhhccCcCEEECcC-Cee-ccCCChhHcCCCCCcEEECCCCccCCcCC---------hhHhcCCCCCEEECc
Confidence 1 1222233346788888876 421 11111235667888888888877 33322 112357788888888
Q ss_pred cCcCCCCCch-hhccCCcceEeEecccCcccccccccccc------------cccccCCCCccccccceeeccccccccc
Q 008415 432 YCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRD------------ISVIIGSEHNFFAQLEYLSISWGTNLKS 498 (566)
Q Consensus 432 ~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------------~~~~l~~~~~~f~~L~~L~L~~~~~L~~ 498 (566)
+|.....+|. ++.+++|+.|++++|.....++. .+... ....+|..+..+++|+.|++.++.--..
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 7755545554 77778888888877654332221 11000 0012344567789999999999864445
Q ss_pred cCCCCCCCCCccEEeecCCCCCCC-CCCCCccccCCcEEEec
Q 008415 499 VYPNPLPFPKLKKIDVCHCPQLKK-LPLNSSSAKERRVVIEG 539 (566)
Q Consensus 499 l~~~~~~~p~L~~L~i~~C~~L~~-lP~~~~~~l~~L~i~~~ 539 (566)
++.....+++|+.|++.++. +.. +|...... +.|+.++.
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L 459 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNN-LQGRINSRKWDM-PSLQMLSL 459 (968)
T ss_pred CChhHhcCCCCCEEECcCCc-ccCccChhhccC-CCCcEEEC
Confidence 66666779999999999975 554 55444333 44444433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=3.6e-19 Score=176.56 Aligned_cols=322 Identities=19% Similarity=0.214 Sum_probs=185.5
Q ss_pred cCCccccCCCcccc-ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415 185 AGVELTEAPKFEEW-EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261 (566)
Q Consensus 185 ~~~~~~~~~~~~~~-~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l 261 (566)
..+.+..+|..... .++.+|++.+|.|..+. +..-++.||+|+++.|.+.++|...|..-.++++|+|++| .|+.+
T Consensus 110 ~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l 188 (873)
T KOG4194|consen 110 NKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTL 188 (873)
T ss_pred ccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-ccccc
Confidence 33445556654443 45777888777776654 3456777888888888777777655666677888888888 88776
Q ss_pred cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL 341 (566)
Q Consensus 262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 341 (566)
-..- +..|.+|-+|.|+.| .++.+|..++.+|++|+.|++..|.+... .--.+..|++|
T Consensus 189 ~~~~------F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv--------------e~ltFqgL~Sl 247 (873)
T KOG4194|consen 189 ETGH------FDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV--------------EGLTFQGLPSL 247 (873)
T ss_pred cccc------ccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee--------------hhhhhcCchhh
Confidence 6543 678888999999998 78999987688899999999988877541 12223444555
Q ss_pred ceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccC
Q 008415 342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSG 421 (566)
Q Consensus 342 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~ 421 (566)
+.|.+..++...++.-. .-.+..++.|++.. +....+....+-+++.|+.|+++.|.++.+.++ +|. .
T Consensus 248 ~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~--N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-----~Ws---f 315 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGA--FYGLEKMEHLNLET--NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-----SWS---F 315 (873)
T ss_pred hhhhhhhcCcccccCcc--eeeecccceeeccc--chhhhhhcccccccchhhhhccchhhhheeecc-----hhh---h
Confidence 55555444333322210 11124556666653 222222223355566677777766665544433 231 3
Q ss_pred CCcccEEecccCcCCCCCch--hhccCCcceEeEecccCcccccccccccc------------ccccc---CCCCccccc
Q 008415 422 FRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCYDMEEIISVDKLRD------------ISVII---GSEHNFFAQ 484 (566)
Q Consensus 422 l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------------~~~~l---~~~~~~f~~ 484 (566)
.++|+.|+|+. +.++.++. +..|..|++|.++++. +..+-..-|.+- ..|.+ ...+.++|+
T Consensus 316 tqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 316 TQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred cccceeEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 45666666655 34554433 4444444444444432 111110000000 00001 013556888
Q ss_pred cceeeccccccccccCCC-CCCCCCccEEeecCCCCCCC-CCCCCccc-cCCcEE------Eechhhhh
Q 008415 485 LEYLSISWGTNLKSVYPN-PLPFPKLKKIDVCHCPQLKK-LPLNSSSA-KERRVV------IEGEKKWW 544 (566)
Q Consensus 485 L~~L~L~~~~~L~~l~~~-~~~~p~L~~L~i~~C~~L~~-lP~~~~~~-l~~L~i------~~~~~~~~ 544 (566)
|+.|.+.+ .+++.++.. ..-+++|++|++.+- .+.+ =|..+.+. +++|.+ =+|.-.|.
T Consensus 394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred hhheeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhhcccceEEeccHHHH
Confidence 88888887 568887754 344788888888874 4555 34445444 444433 26665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=4e-20 Score=184.43 Aligned_cols=295 Identities=17% Similarity=0.220 Sum_probs=220.7
Q ss_pred EEEecCCccccCCC-ccccccccEEEeecCCccccc-CCCCCCCccEEEecCCccc--ccchHHHhcCccCCEEecCCCC
Q 008415 181 FLVHAGVELTEAPK-FEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINI 256 (566)
Q Consensus 181 ~~~~~~~~~~~~~~-~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~ 256 (566)
.+......+..+|. ...+.++.||++..|++..+. +...++.||++++..|++. .+|.. +-++..|.+||||+|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN- 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN- 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-
Confidence 44555556666663 445678999999999887664 5688999999999999765 68998 777999999999999
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhc
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELL 336 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (566)
.+++.|. .+.+-+++-.|+|++| +|..||..++-+|+-|-.|++++|.... .+..+.
T Consensus 114 qL~EvP~-------~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~---------------LPPQ~R 170 (1255)
T KOG0444|consen 114 QLREVPT-------NLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM---------------LPPQIR 170 (1255)
T ss_pred hhhhcch-------hhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh---------------cCHHHH
Confidence 8876554 4588899999999999 8999999988999999999999988754 788889
Q ss_pred CCCCCceEEEEEcCccc--hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccc
Q 008415 337 GSKHLNVLSWTFRSSLG--VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEV 414 (566)
Q Consensus 337 ~L~~L~~L~i~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~ 414 (566)
.|.+|++|.++.+.... +..+++ +.+|+.|++++ .+........++..+.+|..++++.|.+..+|..
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~-TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec----- 240 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSN-TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC----- 240 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhccc-ccchhhcCCCchhhhhhhhhccccccCCCcchHH-----
Confidence 99999999998654332 223322 25677777776 3321111223567778888888888775544322
Q ss_pred cccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415 415 KKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493 (566)
Q Consensus 415 ~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~ 493 (566)
...+++|+.|+|++ +.++.+.. .+.-.+|+.|+++.+.. .. +|..+..+++|+.|.+.+-
T Consensus 241 ----ly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQL-t~-------------LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 241 ----LYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQL-TV-------------LPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred ----HhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchh-cc-------------chHHHhhhHHHHHHHhccC
Confidence 13568888888888 46666644 56667888888887643 22 4557788999999999863
Q ss_pred c-cccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc
Q 008415 494 T-NLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSA 530 (566)
Q Consensus 494 ~-~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~ 530 (566)
. +.+.+|.+.+.+.+|+.+...+ ++|+-+|+++.+.
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC 338 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRC 338 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhc-cccccCchhhhhh
Confidence 2 3567899999999999998887 6788888887664
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-18 Score=171.83 Aligned_cols=295 Identities=20% Similarity=0.253 Sum_probs=201.7
Q ss_pred ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 199 EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.++.+|.+.+|.|..+. .+..+.+|.+|.++.|.++.+|...|+++++|+.|+|..| .|+..-- ..+..|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~------ltFqgL~ 245 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEG------LTFQGLP 245 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehh------hhhcCch
Confidence 46778888888877654 4566778888888888888888877788888888888888 7654321 1257788
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN 356 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~ 356 (566)
+|+.|.+..| .+..+-++++..|.++++|++..|.... -.-+.+-+|+.|+.|+++.+....+.
T Consensus 246 Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------------vn~g~lfgLt~L~~L~lS~NaI~rih- 309 (873)
T KOG4194|consen 246 SLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQA--------------VNEGWLFGLTSLEQLDLSYNAIQRIH- 309 (873)
T ss_pred hhhhhhhhhc-CcccccCcceeeecccceeecccchhhh--------------hhcccccccchhhhhccchhhhheee-
Confidence 8888888888 7888888878888888888888877654 23445778888899998865432221
Q ss_pred cccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcC-
Q 008415 357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK- 435 (566)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~- 435 (566)
.........|+.|+++. +....++..++..+..|+.|+++.|.+..+.... ...+.+|++|+|+....
T Consensus 310 -~d~WsftqkL~~LdLs~--N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a--------f~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 310 -IDSWSFTQKLKELDLSS--NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA--------FVGLSSLHKLDLRSNELS 378 (873)
T ss_pred -cchhhhcccceeEeccc--cccccCChhHHHHHHHhhhhcccccchHHHHhhH--------HHHhhhhhhhcCcCCeEE
Confidence 11223447888999986 5555666667888889999999998855443221 13568999999876321
Q ss_pred --CCCC-chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccE
Q 008415 436 --AKDL-TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKK 511 (566)
Q Consensus 436 --l~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~ 511 (566)
+++- -.+..+++|+.|.+.++ .++.|.. ..+.+|+.|++|+|.+-+ +.++-... ..+ .|++
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k------------rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK------------RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKE 443 (873)
T ss_pred EEEecchhhhccchhhhheeecCc-eeeecch------------hhhccCcccceecCCCCc-ceeecccccccc-hhhh
Confidence 1221 12555999999999886 5666654 357789999999998854 55554332 334 7888
Q ss_pred Eeec------CCCCCCCCCCCCccc-cCCcEEEec-hhhh
Q 008415 512 IDVC------HCPQLKKLPLNSSSA-KERRVVIEG-EKKW 543 (566)
Q Consensus 512 L~i~------~C~~L~~lP~~~~~~-l~~L~i~~~-~~~~ 543 (566)
|.+. +| .|+=++..+-.. ++.-.+..| .++|
T Consensus 444 Lv~nSssflCDC-ql~Wl~qWl~~~~lq~sv~a~CayPe~ 482 (873)
T KOG4194|consen 444 LVMNSSSFLCDC-QLKWLAQWLYRRKLQSSVIAKCAYPEP 482 (873)
T ss_pred hhhcccceEEec-cHHHHHHHHHhcccccceeeeccCCcc
Confidence 8764 45 456566665444 455555444 3444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=9.4e-18 Score=159.68 Aligned_cols=308 Identities=20% Similarity=0.228 Sum_probs=187.1
Q ss_pred CccccCC-CccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc
Q 008415 187 VELTEAP-KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265 (566)
Q Consensus 187 ~~~~~~~-~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i 265 (566)
..+..+| ....++++..+.++.|++..+|++..|..|..|.+..|+++.+|....+++.+|.+|||+.| .+++.|+.
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde- 270 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE- 270 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-
Confidence 3444454 45667888889999999999999999999999999999999999997779999999999999 99776654
Q ss_pred cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc--------c----------ccccccccc-
Q 008415 266 RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV--------T----------EEEGNVLCE- 326 (566)
Q Consensus 266 ~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~--------~----------~~~~~~~~~- 326 (566)
++.|++|.+||+++| .++.+|.+ +|+| +|+.|-+.|++.... . ....+...+
T Consensus 271 ------~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 271 ------ICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred ------HHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 699999999999999 89999998 9999 999999999987532 0 000000000
Q ss_pred --------CccchHhhhcCCCCCceEEEEEcCccchhc-cccCCcccccceEEEEecccCCCCCe-eee-ccccccCcce
Q 008415 327 --------DAEPLMKELLGSKHLNVLSWTFRSSLGVQN-FLKYPKLVSITQSVLVKSGVHTSPPF-NVL-HLAYMENLQK 395 (566)
Q Consensus 327 --------~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~l~~~~~L~~ 395 (566)
.......+...+.+.+.|+++....+..+. ++... ...-....+++. +.. .++ .+..+..+.+
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~Vnfsk-----NqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSK-----NQLCELPKRLVELKELVT 415 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEeccc-----chHhhhhhhhHHHHHHHH
Confidence 011112222333344444444322111110 00000 001112222222 000 000 1111222222
Q ss_pred EEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCccccccccc------
Q 008415 396 FELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDK------ 467 (566)
Q Consensus 396 L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~------ 467 (566)
.-+..++ +.+++ .....+++|+.|++++ +.+.++|. ++++..|+.|+|+.+. ...++..-.
T Consensus 416 ~l~lsnn~isfv~---------~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 416 DLVLSNNKISFVP---------LELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLE 484 (565)
T ss_pred HHHhhcCccccch---------HHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHH
Confidence 1111112 33221 1124677888888877 45666665 7777788888887663 222221000
Q ss_pred -cccc---ccccC-CCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 008415 468 -LRDI---SVIIG-SEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL 525 (566)
Q Consensus 468 -~~~~---~~~l~-~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~ 525 (566)
+-.. -..++ ..++.+.+|..|++.+ ..++.+|...+.|.+|++|.+.+-| ++ .|.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-CCH
Confidence 0000 00122 2377888999999987 5688999999999999999999853 44 553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=3.8e-17 Score=155.58 Aligned_cols=206 Identities=22% Similarity=0.306 Sum_probs=137.6
Q ss_pred CCccccCC-CccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccc
Q 008415 186 GVELTEAP-KFEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263 (566)
Q Consensus 186 ~~~~~~~~-~~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~ 263 (566)
++.+...| .+....+..++..+.|.+..+| +......|+.|+.+.|.+.++|++ ++.+..|..|+..+| .+.++|.
T Consensus 77 ~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N-~i~slp~ 154 (565)
T KOG0472|consen 77 DNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNN-QISSLPE 154 (565)
T ss_pred cchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccc-ccccCch
Confidence 33344443 3445566677777777777766 456777888888888888888877 777778888888877 7888887
Q ss_pred cc----------------cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccc-----c
Q 008415 264 GI----------------RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEG-----N 322 (566)
Q Consensus 264 ~i----------------~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~-----~ 322 (566)
++ ..+|...-+++.|++||...| -++.+|++ ++.|.+|+.|++..+.+...-+... .
T Consensus 155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIRFLPEFPGCSLLKE 232 (565)
T ss_pred HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence 76 566666666788888888887 78888887 8888888888888777654210000 0
Q ss_pred c-cc-cCccchHh-hhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeee--eccccccCcceEE
Q 008415 323 V-LC-EDAEPLMK-ELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNV--LHLAYMENLQKFE 397 (566)
Q Consensus 323 ~-~~-~~~~~~~~-~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~l~~~~~L~~L~ 397 (566)
+ ++ ......+. .+++|++|..|++..+ .+..++....++++|+.|++++ +++.. .+++++ +|+.|-
T Consensus 233 lh~g~N~i~~lpae~~~~L~~l~vLDLRdN---klke~Pde~clLrsL~rLDlSN-----N~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 233 LHVGENQIEMLPAEHLKHLNSLLVLDLRDN---KLKEVPDEICLLRSLERLDLSN-----NDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHhcccHHHhhHHHHhcccccceeeecccc---ccccCchHHHHhhhhhhhcccC-----CccccCCcccccc-eeeehh
Confidence 0 00 00112223 3457888888888855 3444555556668888999987 33322 257777 899999
Q ss_pred Eeccccc
Q 008415 398 LESCNLE 404 (566)
Q Consensus 398 l~~~~l~ 404 (566)
+.|+++.
T Consensus 304 leGNPlr 310 (565)
T KOG0472|consen 304 LEGNPLR 310 (565)
T ss_pred hcCCchH
Confidence 9988843
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=2.7e-16 Score=164.40 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred ccccccccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i 265 (566)
+....+++.+.++.|.+..+|. ..++.+|+.|.+.+|.+..+|.+ +..+++|.+|++++| .+...|..+
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N-~f~~~Pl~i 133 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFN-HFGPIPLVI 133 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh-HHhhhcccccccchh-ccCCCchhH
Confidence 4445678888888888888873 47889999999999999999998 899999999999999 888888766
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=9e-14 Score=149.74 Aligned_cols=253 Identities=19% Similarity=0.105 Sum_probs=161.7
Q ss_pred ceEEEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 179 QNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
...+......+..+|..- ...++.|++..|+++.+|.. +++|++|++++|.++.+|.. .++|+.|++++| .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-ch
Confidence 345666666777777522 35789999999999988754 58999999999999888853 468999999999 88
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.+|.. ..+|+.|++++| .++.+|.. +++|++|++++|.+.. .+.. .
T Consensus 275 ~~Lp~l----------p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~------------Lp~l------p 321 (788)
T PRK15387 275 THLPAL----------PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS------------LPAL------P 321 (788)
T ss_pred hhhhhc----------hhhcCEEECcCC-cccccccc----ccccceeECCCCcccc------------CCCC------c
Confidence 877642 246778899998 78888863 4689999998887654 1111 1
Q ss_pred CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415 339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF 418 (566)
Q Consensus 339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 418 (566)
.+|+.|.+..+....++. ...+|+.|++++ .. ... ++.+ .++|+.|++++|.+..+|.
T Consensus 322 ~~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~-N~-Ls~--LP~l--p~~L~~L~Ls~N~L~~LP~---------- 379 (788)
T PRK15387 322 SELCKLWAYNNQLTSLPT------LPSGLQELSVSD-NQ-LAS--LPTL--PSELYKLWAYNNRLTSLPA---------- 379 (788)
T ss_pred ccccccccccCccccccc------cccccceEecCC-Cc-cCC--CCCC--CcccceehhhccccccCcc----------
Confidence 235555555443333322 224677777775 21 111 1111 2467777777766443321
Q ss_pred ccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc
Q 008415 419 QSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS 498 (566)
Q Consensus 419 ~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~ 498 (566)
.+++|+.|+++++ .+..+|.. .++|+.|+++++. +..++. .+.+|+.|++.+ .+++.
T Consensus 380 --l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----------------l~~~L~~L~Ls~-NqLt~ 436 (788)
T PRK15387 380 --LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYR-NQLTR 436 (788)
T ss_pred --cccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc----------------chhhhhhhhhcc-Ccccc
Confidence 2346777777764 45555543 3567777777764 333321 234566777766 34666
Q ss_pred cCCCCCCCCCccEEeecCC
Q 008415 499 VYPNPLPFPKLKKIDVCHC 517 (566)
Q Consensus 499 l~~~~~~~p~L~~L~i~~C 517 (566)
+|.....+++|+.|++.++
T Consensus 437 LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cChHHhhccCCCeEECCCC
Confidence 6666666777777777764
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.48 E-value=5.7e-14 Score=154.47 Aligned_cols=312 Identities=23% Similarity=0.271 Sum_probs=200.4
Q ss_pred EEEecCCccccCCCccccccccEEEeecCC--cccccC--CCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNG--IRSLSE--IPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRIN 255 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~--~~~l~~--~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~ 255 (566)
.++..+.....++......++++|-+..|. +..++. +..++.||+|++++| ++.++|.+ ++.+-+||||+|+++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 344445555555555555689999999886 555554 688999999999988 67899998 999999999999999
Q ss_pred CCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc---------cccccccccc
Q 008415 256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV---------TEEEGNVLCE 326 (566)
Q Consensus 256 ~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~---------~~~~~~~~~~ 326 (566)
.+..||. ++++|+.|.||++..+..+..+|.. +..|++||+|.+........ ++.+..+..+
T Consensus 606 -~I~~LP~-------~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 606 -GISHLPS-------GLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred -Cccccch-------HHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 8876655 4699999999999999777777663 67799999999987652211 1122222221
Q ss_pred C-ccchHhhhcCCCCCceEEEEEc-CccchhccccCCcccccceEEEEecccCCCCCee-e---eccc-cccCcceEEEe
Q 008415 327 D-AEPLMKELLGSKHLNVLSWTFR-SSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFN-V---LHLA-YMENLQKFELE 399 (566)
Q Consensus 327 ~-~~~~~~~l~~L~~L~~L~i~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~l~-~~~~L~~L~l~ 399 (566)
. .......+..+..|+.+..... ..............+.+|+.|.+.. |...+... . .... .++++..+.+.
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD-CGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc-CCCchhhcccccccchhhhHHHHHHHHhh
Confidence 1 1122344445555543332221 1134455556666778999999998 76422111 0 0111 14566666666
Q ss_pred ccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCC
Q 008415 400 SCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGS 477 (566)
Q Consensus 400 ~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~ 477 (566)
+|. ...+ .|. ...++|+.|.+..|+.++++.+ ...+..++.+.+..+ ....... + .
T Consensus 756 ~~~~~r~l--------~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~----------~-~ 813 (889)
T KOG4658|consen 756 NCHMLRDL--------TWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRM----------L-C 813 (889)
T ss_pred cccccccc--------chh--hccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-cccccee----------e-e
Confidence 766 4432 222 3569999999999999988644 555555655333322 2221100 0 1
Q ss_pred CCccccccceeeccccccccccCCCC----CCCCCccEEeecCC-CCCCCCCCC
Q 008415 478 EHNFFAQLEYLSISWGTNLKSVYPNP----LPFPKLKKIDVCHC-PQLKKLPLN 526 (566)
Q Consensus 478 ~~~~f~~L~~L~L~~~~~L~~l~~~~----~~~p~L~~L~i~~C-~~L~~lP~~ 526 (566)
+.+.||++..+.+.... |+.|..+. ..+|.+.++.+.+| +.+..+|.+
T Consensus 814 ~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 814 SLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 34455555555555432 55444443 56899999999997 889999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=7e-13 Score=142.94 Aligned_cols=254 Identities=19% Similarity=0.150 Sum_probs=178.9
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
.-..|++..+.+..+|... .++|+.|.+.+|+++.+|.. +++|++|++++| .++.+|.. ..+|+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l----------p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL----------PPGLL 265 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc----------ccccc
Confidence 4556788888888887632 35899999999999988863 688999999999 99887742 25788
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|++++| .++.+|.. ..+|+.|++.+|.+.. .+. .+++|+.|+++.+....++.+
T Consensus 266 ~L~Ls~N-~L~~Lp~l----p~~L~~L~Ls~N~Lt~---------------LP~---~p~~L~~LdLS~N~L~~Lp~l-- 320 (788)
T PRK15387 266 ELSIFSN-PLTHLPAL----PSGLCKLWIFGNQLTS---------------LPV---LPPGLQELSVSDNQLASLPAL-- 320 (788)
T ss_pred eeeccCC-chhhhhhc----hhhcCEEECcCCcccc---------------ccc---cccccceeECCCCccccCCCC--
Confidence 9999999 78888873 3678899999887754 111 236789999987654444332
Q ss_pred CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415 360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439 (566)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 439 (566)
...|+.|.+.+ +. ... ++.+ ..+|+.|++++|.+..+|. .+++|+.|++++ +.+..+
T Consensus 321 ----p~~L~~L~Ls~-N~-L~~--LP~l--p~~Lq~LdLS~N~Ls~LP~------------lp~~L~~L~Ls~-N~L~~L 377 (788)
T PRK15387 321 ----PSELCKLWAYN-NQ-LTS--LPTL--PSGLQELSVSDNQLASLPT------------LPSELYKLWAYN-NRLTSL 377 (788)
T ss_pred ----ccccccccccc-Cc-ccc--cccc--ccccceEecCCCccCCCCC------------CCcccceehhhc-cccccC
Confidence 24577777776 32 111 1221 2489999999988665431 246788999887 467777
Q ss_pred chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCC
Q 008415 440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQ 519 (566)
Q Consensus 440 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~ 519 (566)
|.+ .++|+.|+++++. +..++. .+++|+.|+++++ .++.+|. .+.+|+.|++.+ ++
T Consensus 378 P~l--~~~L~~LdLs~N~-Lt~LP~----------------l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~-Nq 433 (788)
T PRK15387 378 PAL--PSGLKELIVSGNR-LTSLPV----------------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQ 433 (788)
T ss_pred ccc--ccccceEEecCCc-ccCCCC----------------cccCCCEEEccCC-cCCCCCc---chhhhhhhhhcc-Cc
Confidence 754 3689999998874 333321 2468999999986 4777773 346789999988 57
Q ss_pred CCCCCCCCccccCCcEEEechhh
Q 008415 520 LKKLPLNSSSAKERRVVIEGEKK 542 (566)
Q Consensus 520 L~~lP~~~~~~l~~L~i~~~~~~ 542 (566)
|+.+|..+..+ ..|..++...+
T Consensus 434 Lt~LP~sl~~L-~~L~~LdLs~N 455 (788)
T PRK15387 434 LTRLPESLIHL-SSETTVNLEGN 455 (788)
T ss_pred ccccChHHhhc-cCCCeEECCCC
Confidence 99999876655 56655555443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=3.4e-14 Score=120.36 Aligned_cols=156 Identities=24% Similarity=0.318 Sum_probs=104.1
Q ss_pred ccCCCccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccccccc
Q 008415 190 TEAPKFEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268 (566)
Q Consensus 190 ~~~~~~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L 268 (566)
.+++..-.++.++++.++.|.+..+| .+..+.+|++|.+++|+++++|.+ ++.+++||.|++.-| .+..+|.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lpr----- 96 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPR----- 96 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCcc-----
Confidence 34455556677888888888877664 567788888888888888888887 788888888888877 6655444
Q ss_pred CcchhccccCcEecccCcccCC--ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEE
Q 008415 269 PQELKALEKLRYLNLDYTRFLS--IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSW 346 (566)
Q Consensus 269 P~~i~~L~~L~~L~L~~~~~l~--~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i 346 (566)
++|.++-|+.||+.+| ++. .+|.. +-.|+.|+.|+++.+.... .+.++++|++|+.|.+
T Consensus 97 --gfgs~p~levldltyn-nl~e~~lpgn-ff~m~tlralyl~dndfe~---------------lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 97 --GFGSFPALEVLDLTYN-NLNENSLPGN-FFYMTTLRALYLGDNDFEI---------------LPPDVGKLTNLQILSL 157 (264)
T ss_pred --ccCCCchhhhhhcccc-ccccccCCcc-hhHHHHHHHHHhcCCCccc---------------CChhhhhhcceeEEee
Confidence 4577777777777776 443 36666 6666677777776665543 5666667777776666
Q ss_pred EEcCccchhccccCCcccccceEEEEec
Q 008415 347 TFRSSLGVQNFLKYPKLVSITQSVLVKS 374 (566)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 374 (566)
..++.. .++...+.+..|+.|++.+
T Consensus 158 rdndll---~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 158 RDNDLL---SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccCchh---hCcHHHHHHHHHHHHhccc
Confidence 644322 2333334445666666665
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=3.7e-12 Score=138.17 Aligned_cols=93 Identities=19% Similarity=0.413 Sum_probs=40.3
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
..+.+.++++..+|... .++|+.|++++|.+..+|..+ ..+|++|++++| .++.+|..+ | .+|+.|
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l---~------~~L~~L 246 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATL---P------DTIQEM 246 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhh---h------ccccEE
Confidence 34444444444444311 234555555555554454432 134555555555 444444321 1 234445
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCC
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 312 (566)
++++| .+..+|.. +. .+|+.|++++|.
T Consensus 247 ~Ls~N-~L~~LP~~-l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 247 ELSIN-RITELPER-LP--SALQSLDLFHNK 273 (754)
T ss_pred ECcCC-ccCcCChh-Hh--CCCCEEECcCCc
Confidence 55554 44444443 22 244555554443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=5.8e-12 Score=136.69 Aligned_cols=242 Identities=17% Similarity=0.174 Sum_probs=156.6
Q ss_pred EEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l 261 (566)
+...+.++..+|..- ...++.|.+.+|.+..+|... +++|++|++++|.+..+|..+ ..+|+.|+|++| .+..+
T Consensus 183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITEL 256 (754)
T ss_pred EEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcC
Confidence 444555666666421 357999999999999887543 469999999999999999763 357999999999 99888
Q ss_pred cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL 341 (566)
Q Consensus 262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 341 (566)
|..+ . .+|++|++++| +++.+|.. +. .+|++|++++|.+.. .+..+. ++|
T Consensus 257 P~~l-------~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~---------------LP~~lp--~sL 306 (754)
T PRK15370 257 PERL-------P--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRT---------------LPAHLP--SGI 306 (754)
T ss_pred ChhH-------h--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCcccc---------------Ccccch--hhH
Confidence 7543 2 47999999998 89999986 54 589999999987654 111111 346
Q ss_pred ceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccC
Q 008415 342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSG 421 (566)
Q Consensus 342 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~ 421 (566)
+.|+++.+....++. ....+|+.|.+.+ +. ...+. ..+ .++|+.|++++|.+..+|. ..
T Consensus 307 ~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~-N~-Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~-----------~l 365 (754)
T PRK15370 307 THLNVQSNSLTALPE-----TLPPGLKTLEAGE-NA-LTSLP-ASL--PPELQVLDVSKNQITVLPE-----------TL 365 (754)
T ss_pred HHHHhcCCccccCCc-----cccccceeccccC-Cc-cccCC-hhh--cCcccEEECCCCCCCcCCh-----------hh
Confidence 666666543332221 1125677777776 32 11111 012 2578888888887544331 12
Q ss_pred CCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415 422 FRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493 (566)
Q Consensus 422 l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~ 493 (566)
.++|+.|+|++| .+..+|. +. ++|+.|++++|. +..++.. ++.....+|++..|.+.+-
T Consensus 366 p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~s---------l~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 366 PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN-LVRLPES---------LPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC-cccCchh---------HHHHhhcCCCccEEEeeCC
Confidence 357888888886 4556654 32 367888887764 3333320 1112234566777777653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=1e-13 Score=145.43 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=91.0
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
.++++|....|.+..+.......+|++++++.+.+..+| ++++.+.+|..|+..+| .+..+|.. +...++|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~r-------i~~~~~L 289 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLR-------ISRITSL 289 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHH-------HhhhhhH
Confidence 577888888887776655567789999999999999999 66999999999999999 88776654 5888999
Q ss_pred cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
++|.+.+| .++.+|+. .+++++|++|++..+.+..
T Consensus 290 ~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 290 VSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred HHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccc
Confidence 99999999 89999986 7889999999999887765
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=2.7e-14 Score=120.92 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=117.9
Q ss_pred cccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC
Q 008415 211 IRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS 290 (566)
Q Consensus 211 ~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~ 290 (566)
+.+++....+.+...|.++.|++..+|+. +..+++|++|++++| .|+++|.+ |..|++|++|+++-| ++.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~-------issl~klr~lnvgmn-rl~ 92 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTS-------ISSLPKLRILNVGMN-RLN 92 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChh-------hhhchhhhheecchh-hhh
Confidence 34566677788899999999999999999 899999999999999 99776655 599999999999999 899
Q ss_pred ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEE
Q 008415 291 IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSV 370 (566)
Q Consensus 291 ~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L 370 (566)
.+|.+ +|.++-|+.|++..+...+. ..+..+-.++.|+.|.+..+ .++-++.....+++|+.|
T Consensus 93 ~lprg-fgs~p~levldltynnl~e~-------------~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 93 ILPRG-FGSFPALEVLDLTYNNLNEN-------------SLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQIL 155 (264)
T ss_pred cCccc-cCCCchhhhhhccccccccc-------------cCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEE
Confidence 99998 99999999999999887652 45555666677777777643 334444444444555555
Q ss_pred EEecccCCCCCeeee-ccccccCcceEEEeccccce
Q 008415 371 LVKSGVHTSPPFNVL-HLAYMENLQKFELESCNLEE 405 (566)
Q Consensus 371 ~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~ 405 (566)
.+.. . .-+.++ .++.+..|+.|+|.|+.+..
T Consensus 156 ~lrd-n---dll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 156 SLRD-N---DLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eecc-C---chhhCcHHHHHHHHHHHHhcccceeee
Confidence 5544 1 111122 24445555555555555443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=1.5e-12 Score=124.40 Aligned_cols=127 Identities=26% Similarity=0.312 Sum_probs=102.7
Q ss_pred eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCC-CC
Q 008415 180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRI-NI 256 (566)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~-~~ 256 (566)
..+.+.+.++.++|..- ......|.+..|.|+.+| .+..+++||.|+++.|.|+.+.+..|.+++.|-.|-+.+ |
T Consensus 49 ~~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N- 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN- 126 (498)
T ss_pred ceEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC-
Confidence 44556667777776422 256777889999999988 468899999999999999988777799998888777766 6
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+|+++|... ++.|..|+.|.+.-| .+..++.+++..|++|..|.+..+.+..
T Consensus 127 kI~~l~k~~------F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 127 KITDLPKGA------FGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred chhhhhhhH------hhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence 999999877 888999999999888 7888888878889999988888876643
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=8e-11 Score=104.45 Aligned_cols=134 Identities=23% Similarity=0.301 Sum_probs=53.1
Q ss_pred CCccccccccEEEeecCCcccccCCC-CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcc
Q 008415 193 PKFEEWEGAKRVSLMGNGIRSLSEIP-TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE 271 (566)
Q Consensus 193 ~~~~~~~~lr~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~ 271 (566)
+...+..+.|.|++.++.+..+.... .+.+|++|++++|.+..++. +..++.|+.|++++| .|+++++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l------ 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGL------ 83 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHH------
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccch------
Confidence 33444457888999999998887765 57899999999999888864 778999999999999 888775433
Q ss_pred hhccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 272 LKALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 272 i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
...+++|++|++++| +|..+.. ..+..+++|++|++.+|++... ......-+..+++|+.|+-.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-----------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-----------TTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-----------hhHHHHHHHHcChhheeCCE
Confidence 246889999999998 7776543 1267889999999998887541 23344456677778777655
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=1.1e-10 Score=116.83 Aligned_cols=90 Identities=24% Similarity=0.323 Sum_probs=43.2
Q ss_pred CCCccEEEecCCccc-----ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC-ccc
Q 008415 220 CPRLVTLLLGGNRIE-----EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS-IIP 293 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~-----~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~-~lP 293 (566)
+.+|+.|.+.++.+. .++.. +...+.|+.|+++++ .+...|..+..++..+.++++|++|++++| .+. ..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~ 98 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGC 98 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHH
Confidence 344555666555442 23322 444555666666655 444333333333444555556666666665 333 222
Q ss_pred hhhhcCCCC---CcEEEecCCCC
Q 008415 294 HQLISGFSK---LEVLRLFGCGF 313 (566)
Q Consensus 294 ~~~i~~L~~---L~~L~l~~~~~ 313 (566)
.. +..+.+ |++|++++|..
T Consensus 99 ~~-~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 99 GV-LESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HH-HHHHhccCcccEEEeeCCcc
Confidence 22 333333 66666665554
No 24
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.96 E-value=1.1e-10 Score=114.97 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=82.4
Q ss_pred eecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHH--HhccccccCcchhhHHHHHHH
Q 008415 6 STFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIE--EQRPRTRRTNQVAGWLEDVQK 80 (566)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la--~~~g~l~~~~~~~~W~~~~~~ 80 (566)
.+.+..--.+++|++|.+.++... .. ..+.+.+.+++|+++| |+| ++|+.++.+.+.++|+++++.
T Consensus 151 ~~~l~~L~~~ea~~L~~~~~~~~~-~~--------~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~ 221 (287)
T PF00931_consen 151 VIELEPLSEEEALELFKKRAGRKE-SE--------SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEE 221 (287)
T ss_dssp EEECSS--HHHHHHHHHHHHTSHS-------------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHH
T ss_pred cccccccccccccccccccccccc-cc--------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 444555445789999998886533 00 1123355666677776 877 456777666689999999888
Q ss_pred HHHhh-------------HHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccc
Q 008415 81 LETEY-------------TELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFD 134 (566)
Q Consensus 81 l~~~~-------------~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~ 134 (566)
+.... ...+|+.||+++|+|| +|| |+||+ |+++.|+++|+|+|||...+
T Consensus 222 l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f-~~L----~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 222 LENSLRESRDYDRSVFSALELSYDSLPDELRRCF-LYL----SIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHH-HHG----GGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccccccccccccccceechhcCCccHHHHH-hhC----cCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 76633 3467788999999999 999 99998 99999999999999998754
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=2.4e-10 Score=109.62 Aligned_cols=123 Identities=23% Similarity=0.354 Sum_probs=103.5
Q ss_pred EEecCCccccCCC--ccccccccEEEeecCCccccc--CCCCCCCccEEEecC-CcccccchHHHhcCccCCEEecCCCC
Q 008415 182 LVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGG-NRIEEITDGFFQSMSTLRVLSLRINI 256 (566)
Q Consensus 182 ~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~-~~l~~lp~~~~~~l~~Lr~L~L~~~~ 256 (566)
+....+.++.+|. ++.+.++|+|+++.|.|..+. .+..++.|-+|.+.+ |+|+++|...|+++..|+-|.+.-|
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan- 150 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN- 150 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-
Confidence 3444556666664 556789999999999999875 568888888887777 7999999999999999999999999
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCC
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 312 (566)
.+..++... +..|++|..|.+.+| .++.++.+.+..+..++++.+..+.
T Consensus 151 ~i~Cir~~a------l~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 151 HINCIRQDA------LRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhcchhHHH------HHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 888777654 889999999999999 8999999779999999999887665
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=3.4e-09 Score=94.11 Aligned_cols=125 Identities=27% Similarity=0.332 Sum_probs=60.3
Q ss_pred EEecCCccccCCCcc-ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415 182 LVHAGVELTEAPKFE-EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~-~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~ 260 (566)
+...+..+..+.... .+.+++.|++++|.+..++.+..+++|++|++++|.+.++++.+...+++|+.|++++| .|..
T Consensus 24 L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~ 102 (175)
T PF14580_consen 24 LNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISD 102 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----S
T ss_pred ccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCC
Confidence 444555555555554 35789999999999999999999999999999999999997764467999999999999 8887
Q ss_pred ccccccccCcchhccccCcEecccCcccCCccch---hhhcCCCCCcEEEecCCCC
Q 008415 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~~~~~ 313 (566)
+-+- ..+..+++|++|++.+| .+..-+. -+|..+++|+.||-.....
T Consensus 103 l~~l-----~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 103 LNEL-----EPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp CCCC-----GGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred hHHh-----HHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEccH
Confidence 6431 34678999999999999 5666553 4578899999999865443
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=1.2e-09 Score=109.21 Aligned_cols=182 Identities=20% Similarity=0.134 Sum_probs=106.8
Q ss_pred ccccEEEeecCCccc-----cc-CCCCCCCccEEEecCCcccc-------cchHHHhcCccCCEEecCCCCCCccccccc
Q 008415 199 EGAKRVSLMGNGIRS-----LS-EIPTCPRLVTLLLGGNRIEE-------ITDGFFQSMSTLRVLSLRINISLRKLPSGI 265 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~-----l~-~~~~~~~Lr~L~l~~~~l~~-------lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i 265 (566)
..++.+.+.++.+.. ++ .....++++.|.++++.+.. ++. .+..+++|++|++++| .+....
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-~~~~~~--- 97 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDN-ALGPDG--- 97 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCC-CCChhH---
Confidence 458888888877633 22 23566779999998876542 223 3677889999999999 775321
Q ss_pred cccCcchhccc---cCcEecccCcccCCc-----cchhhhcCC-CCCcEEEecCCCCcccccccccccccCccchHhhhc
Q 008415 266 RGLPQELKALE---KLRYLNLDYTRFLSI-----IPHQLISGF-SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELL 336 (566)
Q Consensus 266 ~~LP~~i~~L~---~L~~L~L~~~~~l~~-----lP~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (566)
+..+..+. +|++|++++| .+.. +... +..+ ++|++|++.+|.+... ........+.
T Consensus 98 ---~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~ 162 (319)
T cd00116 98 ---CGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA----------SCEALAKALR 162 (319)
T ss_pred ---HHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch----------HHHHHHHHHH
Confidence 22234444 4999999998 5652 3333 5667 8999999999987631 0112344566
Q ss_pred CCCCCceEEEEEcCccc--hhccccCCcccccceEEEEecccCCCCCeee----eccccccCcceEEEeccc
Q 008415 337 GSKHLNVLSWTFRSSLG--VQNFLKYPKLVSITQSVLVKSGVHTSPPFNV----LHLAYMENLQKFELESCN 402 (566)
Q Consensus 337 ~L~~L~~L~i~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~ 402 (566)
.+++|+.|++..+.... ...+........+|+.|++++ +. ...... ..+..+++|+.|++++|.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-NG-LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-Cc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 77788888887654321 111111111124566666655 32 111100 123344556666666655
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.8e-09 Score=102.15 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=34.9
Q ss_pred cccccCcceEEEeccccceeee-cccccccccCccCCCcccEEecccCcC--CCCCchhhccCCcceEeEeccc
Q 008415 387 LAYMENLQKFELESCNLEEMKI-DSTEEVKKLFQSGFRSLNTVSVHYCRK--AKDLTWLVFVQNLKVLRIGDCY 457 (566)
Q Consensus 387 l~~~~~L~~L~l~~~~l~~l~~-~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~l~~l~~l~~L~~L~L~~~~ 457 (566)
...++.|..|+++.|.+..+.. +.. .......|++|++|.+...+- +..+..+..+++|+.|.+..++
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~---s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVE---SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccccchhhhhccccCcchhcCCCcc---chhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 4556677777776666332211 000 001124567777777766432 3333335556666766665443
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=1.9e-08 Score=73.26 Aligned_cols=58 Identities=33% Similarity=0.547 Sum_probs=28.1
Q ss_pred CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCc
Q 008415 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYT 286 (566)
Q Consensus 222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~ 286 (566)
+|++|++++|++..+|...|.++++|++|++++| .++.+|+.. +..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDA------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTT------TTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHH------HcCCCCCCEEeCcCC
Confidence 4455555555555555444455555555555555 444444322 444444555544444
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.4e-08 Score=72.67 Aligned_cols=61 Identities=28% Similarity=0.400 Sum_probs=55.5
Q ss_pred ccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 245 STLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 245 ~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
++|++|++++| .++.+|... +..+++|++|++++| .++.+|.+++..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~------f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS------FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTT------TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHH------HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47999999999 999998765 899999999999999 89999988799999999999998863
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=1.3e-09 Score=105.42 Aligned_cols=292 Identities=21% Similarity=0.204 Sum_probs=160.1
Q ss_pred ccccEEEeecCCcccccC----CCCCCCccEEEecCCc-ccc-cchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 199 EGAKRVSLMGNGIRSLSE----IPTCPRLVTLLLGGNR-IEE-ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~----~~~~~~Lr~L~l~~~~-l~~-lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
..+|.+++.+..-..... ...++++..|.+.++. +++ .-.++-..+++|++|+|..|..++... |-.-.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~-----Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS-----LKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH-----HHHHH
Confidence 356667776654332221 2667888888887773 332 112223567888888888875665421 11113
Q ss_pred hccccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 273 KALEKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
..+++|++|+++.|..++. +-.- ..++.+++.+...||.... .......=+....+-++++..+.
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~~~~~kGC~e~~------------le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQAL-QRGCKELEKLSLKGCLELE------------LEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHH-hccchhhhhhhhccccccc------------HHHHHHHhccChHhhccchhhhc
Confidence 4567888888888865554 1111 3456667777777765543 11111111111222233322222
Q ss_pred ccchhccccCCcccccceEEEEecccCCCCCeeeecc-ccccCcceEEEeccc-cceeeecccccccccCccCCCcccEE
Q 008415 351 SLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHL-AYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTV 428 (566)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L 428 (566)
..+.+.+...-.....|+.|..++ |.+..+..+..+ .+.++|+.|.+.+|. +........ ..+.+.|+.+
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~-~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le~l 351 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSS-CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLERL 351 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccC-CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhhhh
Confidence 111122211222234567777777 665444444443 355788888888887 554332211 1245778888
Q ss_pred ecccCcCCCCC--ch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCC-CCC
Q 008415 429 SVHYCRKAKDL--TW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYP-NPL 504 (566)
Q Consensus 429 ~L~~c~~l~~l--~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~-~~~ 504 (566)
.+.+|....+- .. -...|.|+.|.++.|+.+++..... +.....+...|+.|.|++||.+++-.. ...
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~--------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH--------LSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh--------hhhccccccccceeeecCCCCchHHHHHHHh
Confidence 88887555443 12 3347888888888887766432100 112334566788888888887654221 223
Q ss_pred CCCCccEEeecCCCCCCCCC
Q 008415 505 PFPKLKKIDVCHCPQLKKLP 524 (566)
Q Consensus 505 ~~p~L~~L~i~~C~~L~~lP 524 (566)
..++|+.+++.+|....+=|
T Consensus 424 ~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hCcccceeeeechhhhhhhh
Confidence 46788888888887776544
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1.5e-09 Score=104.99 Aligned_cols=286 Identities=19% Similarity=0.195 Sum_probs=172.4
Q ss_pred CCccEEEecCCcc---cccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchh-h
Q 008415 221 PRLVTLLLGGNRI---EEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ-L 296 (566)
Q Consensus 221 ~~Lr~L~l~~~~l---~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~-~ 296 (566)
..||.|.+.|+.- ..+ ..+-.+++++..|++.+|..++. ..+-.--..+.+|++|++..|..++...-. .
T Consensus 138 g~lk~LSlrG~r~v~~ssl-rt~~~~CpnIehL~l~gc~~iTd-----~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSL-RTFASNCPNIEHLALYGCKKITD-----SSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchh-hHHhhhCCchhhhhhhcceeccH-----HHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 4688888888832 122 22356788899999998855543 111112356788999999998777764321 2
Q ss_pred hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEeccc
Q 008415 297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGV 376 (566)
Q Consensus 297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (566)
...+++|++|+++.|.... ....-.-.....+++.+...++.....+.+........-+..+++.. |
T Consensus 212 a~gC~kL~~lNlSwc~qi~------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~-c 278 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQIS------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH-C 278 (483)
T ss_pred HHhhhhHHHhhhccCchhh------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh-h
Confidence 4568899999999887654 11122223444556666555554444444433322223344555555 6
Q ss_pred CCCCCeeeecc-ccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC--chh-hccCCcceE
Q 008415 377 HTSPPFNVLHL-AYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL--TWL-VFVQNLKVL 451 (566)
Q Consensus 377 ~~~~~~~~~~l-~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l-~~l~~L~~L 451 (566)
....+.+.-.+ .....|+.|..++|. +...++..+ ....++|+.|.+++|..+.+. ..+ .+.+.|+.+
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL-------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH-------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 44444332222 245678889888887 544332211 134588999999999887764 223 347888999
Q ss_pred eEecccCcccccccccccccccccCCCCccccccceeecccccccccc-----CCCCCCCCCccEEeecCCCCCCCCCCC
Q 008415 452 RIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-----YPNPLPFPKLKKIDVCHCPQLKKLPLN 526 (566)
Q Consensus 452 ~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-----~~~~~~~p~L~~L~i~~C~~L~~lP~~ 526 (566)
++.+|.....-- +..-..++|.|+.|.|+.|...+.- .....++..|+.+.+.+||.++.--..
T Consensus 352 ~~e~~~~~~d~t-----------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 352 DLEECGLITDGT-----------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred cccccceehhhh-----------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 888887654320 1123457889999999988766543 222345778899999999887652221
Q ss_pred Cc---cccCCcEEEechhhh
Q 008415 527 SS---SAKERRVVIEGEKKW 543 (566)
Q Consensus 527 ~~---~~l~~L~i~~~~~~~ 543 (566)
.. +.++.+..++|..-.
T Consensus 421 ~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVT 440 (483)
T ss_pred HHhhCcccceeeeechhhhh
Confidence 11 125666667776443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1e-08 Score=95.08 Aligned_cols=130 Identities=21% Similarity=0.250 Sum_probs=101.2
Q ss_pred ccccccccEEEeecCCcccccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
...|+.++.+++++|.++.+.++ .-.|.+|.|+++.|.+..+.. +..+.+|..|||++| .+.++-.. -.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gw-------h~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGW-------HL 349 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhh-------Hh
Confidence 34577888899999988888765 446889999999998877654 678889999999998 77665432 25
Q ss_pred ccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 274 ~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
+|-|.++|.+++| .+..+.. +++|.+|..|++++|++.. ......+++|+-|+.+.+.++.
T Consensus 350 KLGNIKtL~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~-------------ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEE-------------LDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhh-hHhhhhh--hHhhhhheeccccccchhh-------------HHHhcccccccHHHHHhhcCCC
Confidence 6778889999998 7888877 8899999999999888754 2456678888888887777543
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.2e-09 Score=99.35 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=72.1
Q ss_pred CcEecccCcccCCccc-hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415 278 LRYLNLDYTRFLSIIP-HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN 356 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~ 356 (566)
|++|||+.. .++.=. .++++.+.+|+.|.+.|..... .....++.=.+|+.|+++.+++-.-.+
T Consensus 187 lq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD--------------~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 187 LQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDD--------------PIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCc--------------HHHHHHhccccceeeccccccccchhH
Confidence 555555554 333210 1224555566666666555533 344455555556666665443222111
Q ss_pred cccCCcccccceEEEEecccCCCCCeeeeccc-cccCcceEEEeccc--cceeeecccccccccCccCCCcccEEecccC
Q 008415 357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLA-YMENLQKFELESCN--LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC 433 (566)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~--l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 433 (566)
+.-....++.|..|.++| |..........+. --++|..|+++||. +..-.++.. ....++|..|+|++|
T Consensus 252 ~~ll~~scs~L~~LNlsW-c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-------~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSW-CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-------VRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHHHHhhhhHhhcCchH-hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-------HHhCCceeeeccccc
Confidence 111112234555555555 5322221101111 11466666666665 221010000 023466666666666
Q ss_pred cCCCC--CchhhccCCcceEeEecccCc
Q 008415 434 RKAKD--LTWLVFVQNLKVLRIGDCYDM 459 (566)
Q Consensus 434 ~~l~~--l~~l~~l~~L~~L~L~~~~~l 459 (566)
..+++ +..+.+++.|++|.++.|+.+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC
Confidence 65554 122455666666666666653
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.6e-08 Score=97.18 Aligned_cols=185 Identities=19% Similarity=0.159 Sum_probs=97.9
Q ss_pred CCCCCccEEEecCCcccccch-HHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-h
Q 008415 218 PTCPRLVTLLLGGNRIEEITD-GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-Q 295 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~-~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~ 295 (566)
.++..||...+.++.+...+. +....|+++|.|||++| -+...-. +-+-+.+|++|+.|+++.| .+...-. .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~----v~~i~eqLp~Le~LNls~N-rl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFP----VLKIAEQLPSLENLNLSSN-RLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHH----HHHHHHhcccchhcccccc-cccCCcccc
Confidence 556677777777776554442 23566777777777776 4433211 1112356667777777766 3433211 1
Q ss_pred hhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecc
Q 008415 296 LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSG 375 (566)
Q Consensus 296 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (566)
.-..+++|+.|.+++|+..+. ....-+...++|+.|.+..+.
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k-------------~V~~~~~~fPsl~~L~L~~N~------------------------- 233 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWK-------------DVQWILLTFPSLEVLYLEANE------------------------- 233 (505)
T ss_pred chhhhhhhheEEeccCCCCHH-------------HHHHHHHhCCcHHHhhhhccc-------------------------
Confidence 123456666666666666541 122223334444444444221
Q ss_pred cCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC--ch------hhccC
Q 008415 376 VHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL--TW------LVFVQ 446 (566)
Q Consensus 376 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~------l~~l~ 446 (566)
.......+...+..|+.|+|+++. +.+- .....+.|+.|+.|+++.| .+.++ |. ...+|
T Consensus 234 ---~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 234 ---IILIKATSTKILQTLQELDLSNNNLIDFD--------QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred ---ccceecchhhhhhHHhhccccCCcccccc--------cccccccccchhhhhcccc-CcchhcCCCccchhhhcccc
Confidence 000011123345677888888877 4431 1233357788888888775 33332 22 24578
Q ss_pred CcceEeEecccC
Q 008415 447 NLKVLRIGDCYD 458 (566)
Q Consensus 447 ~L~~L~L~~~~~ 458 (566)
+|++|.+..++-
T Consensus 302 kL~~L~i~~N~I 313 (505)
T KOG3207|consen 302 KLEYLNISENNI 313 (505)
T ss_pred cceeeecccCcc
Confidence 888888877654
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=4.8e-09 Score=105.36 Aligned_cols=171 Identities=21% Similarity=0.167 Sum_probs=105.0
Q ss_pred cccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 200 GAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
.....+++.|.+.++|. ...|..|..+.+..|.+..+|.. ++++..|.||||+.| .+..+|..+ +.|+ |
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~l-------C~lp-L 145 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGL-------CDLP-L 145 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhh-------hcCc-c
Confidence 44556677777777763 35566788888888888888877 788888888888888 887766554 4443 6
Q ss_pred cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc
Q 008415 279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL 358 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~ 358 (566)
+.|-+++| +++.+|.+ |+.+..|..|+.+.|.+.. .+..++.|..|+.|.+..+....+ +
T Consensus 146 kvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s---------------lpsql~~l~slr~l~vrRn~l~~l---p 205 (722)
T KOG0532|consen 146 KVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS---------------LPSQLGYLTSLRDLNVRRNHLEDL---P 205 (722)
T ss_pred eeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh---------------chHHhhhHHHHHHHHHhhhhhhhC---C
Confidence 66666666 66666666 6666666666666665543 555666666666666654322222 2
Q ss_pred cCCcccccceEEEEecccCCCCCeeee-ccccccCcceEEEeccccce
Q 008415 359 KYPKLVSITQSVLVKSGVHTSPPFNVL-HLAYMENLQKFELESCNLEE 405 (566)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~ 405 (566)
..... -.|..|+++ |+. -..++ .+..|+.|+.|-+.+|.+..
T Consensus 206 ~El~~-LpLi~lDfS--cNk--is~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 206 EELCS-LPLIRLDFS--CNK--ISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHhC-Cceeeeecc--cCc--eeecchhhhhhhhheeeeeccCCCCC
Confidence 11110 134445555 321 11122 35667777777777766554
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.8e-07 Score=96.55 Aligned_cols=101 Identities=29% Similarity=0.367 Sum_probs=45.6
Q ss_pred cccEEEeecCCcccccCCCCCC--CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCP--RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK 277 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~ 277 (566)
.++.+.+.++.+..++...... +|+.|+++++++..+|.. ++.++.|+.|++++| .+..+|.. .+.+.+
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~-------~~~~~~ 187 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKL-------LSNLSN 187 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhh-------hhhhhh
Confidence 3444444444444444333222 455555555544444332 444555555555554 44443332 134444
Q ss_pred CcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415 278 LRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 311 (566)
|+.|+++++ .+..+|.. ++.+..|++|.+.++
T Consensus 188 L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 188 LNNLDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hhheeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 555555554 44444443 334444555544444
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=3.5e-07 Score=94.35 Aligned_cols=101 Identities=31% Similarity=0.400 Sum_probs=65.8
Q ss_pred EEeecCCc-ccccCCCCCCCccEEEecCCcccccchHHHhcCc-cCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 204 VSLMGNGI-RSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMS-TLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 204 Lsl~~~~~-~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~-~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
+....+.+ .........+.+..|++.++.+.+++.. .+.+. +|+.|+++++ .+..+|. .++.+++|+.|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~-------~~~~l~~L~~L 168 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPS-------PLRNLPNLKNL 168 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhh-------hhhcccccccc
Confidence 44444444 3333344556677777777777777765 55553 7777777777 7765543 25777777777
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
++++| .+..+|.. .+.+++|+.|+++++.+..
T Consensus 169 ~l~~N-~l~~l~~~-~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 169 DLSFN-DLSDLPKL-LSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred ccCCc-hhhhhhhh-hhhhhhhhheeccCCcccc
Confidence 77777 67777774 4577777777777776653
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=2.2e-07 Score=86.37 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=92.2
Q ss_pred cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK 277 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~ 277 (566)
..++|+|.++.|.+..+.....+++|..|++++|.+.++.. +-.++-+.+.|.|++| .|+.+. ++++|.+
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N-~iE~LS--------GL~KLYS 375 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN-KIETLS--------GLRKLYS 375 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh-hHhhhh--------hhHhhhh
Confidence 46899999999999999999999999999999997776643 2456889999999999 888765 3789999
Q ss_pred CcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcc
Q 008415 278 LRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~ 315 (566)
|.+||+++| +|..+.. + ||+|+.|+++.+.+|++..
T Consensus 376 LvnLDl~~N-~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 376 LVNLDLSSN-QIEELDEVNH-IGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred heecccccc-chhhHHHhcc-cccccHHHHHhhcCCCccc
Confidence 999999999 8888764 4 9999999999999998764
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5e-08 Score=90.59 Aligned_cols=184 Identities=20% Similarity=0.169 Sum_probs=104.8
Q ss_pred CCccEEEecCCccc--ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchh-hh
Q 008415 221 PRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ-LI 297 (566)
Q Consensus 221 ~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~-~i 297 (566)
..|+.|++++..++ .+. .+++.+.+|+-|.+.|. .+.. .+-..|.+=.+|+.|+|+.|..+++.... ++
T Consensus 185 sRlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~-~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGL-RLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHHH-HHHHHHHhhhhcccccc-ccCc------HHHHHHhccccceeeccccccccchhHHHHHH
Confidence 34677777776554 222 33666777777777777 5542 11223455567777777777666654432 24
Q ss_pred cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415 298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH 377 (566)
Q Consensus 298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (566)
.+++.|+.|+++.|..... ..-..+.+. ...+..|.+++ |.
T Consensus 257 ~scs~L~~LNlsWc~l~~~-------------~Vtv~V~hi-------------------------se~l~~LNlsG-~r 297 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTE-------------KVTVAVAHI-------------------------SETLTQLNLSG-YR 297 (419)
T ss_pred HhhhhHhhcCchHhhccch-------------hhhHHHhhh-------------------------chhhhhhhhhh-hH
Confidence 6677777777777765431 011111111 12344444444 32
Q ss_pred CC-CCeeeec-cccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCC--CchhhccCCcceEe
Q 008415 378 TS-PPFNVLH-LAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD--LTWLVFVQNLKVLR 452 (566)
Q Consensus 378 ~~-~~~~~~~-l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~ 452 (566)
.. ....+.. ...+|+|.+|+++.|. ++.-. ......|+.|++|.++.|..+.. +-.+...|+|.+|+
T Consensus 298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~--------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC--------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhhHHHHHHHhCCceeeeccccccccCchH--------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence 10 0011111 2456889999998887 55311 12223678999999999976543 23367789999999
Q ss_pred EecccCc
Q 008415 453 IGDCYDM 459 (566)
Q Consensus 453 L~~~~~l 459 (566)
+.+|-.-
T Consensus 370 v~g~vsd 376 (419)
T KOG2120|consen 370 VFGCVSD 376 (419)
T ss_pred eccccCc
Confidence 9888544
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.19 E-value=4.7e-07 Score=91.36 Aligned_cols=113 Identities=24% Similarity=0.342 Sum_probs=80.8
Q ss_pred cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc------------
Q 008415 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI------------ 265 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i------------ 265 (566)
...+..++++.|++..+|.-...--|++|.+++|+++.+|+. ++....|..||.+.| .+..+|+.+
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 345566666666666666544445567777777777777766 666667777777777 666666655
Q ss_pred ----cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 266 ----RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 266 ----~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
..+|..++.| .|..||++.| ++..||-. |.+|+.||+|.+.+|....
T Consensus 198 Rn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 198 RNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCC
Confidence 4566666754 4888999988 89999988 8999999999999888765
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=6.3e-06 Score=89.46 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=67.2
Q ss_pred CccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC-ccchhhhcC
Q 008415 222 RLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS-IIPHQLISG 299 (566)
Q Consensus 222 ~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~-~lP~~~i~~ 299 (566)
.++.|+|+++.+. .+|.. ++.+++|++|+|++| .+. ..+|..++++++|++|+|++| .+. .+|.. +++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~------g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIR------GNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQ 488 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-ccc------CcCChHHhCCCCCCEEECCCC-CCCCCCchH-Hhc
Confidence 4778888888776 56666 888999999999998 775 344555789999999999998 555 67877 899
Q ss_pred CCCCcEEEecCCCCcc
Q 008415 300 FSKLEVLRLFGCGFWV 315 (566)
Q Consensus 300 L~~L~~L~l~~~~~~~ 315 (566)
|++|++|++++|....
T Consensus 489 L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 489 LTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCEEECcCCcccc
Confidence 9999999999887754
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.1e-06 Score=55.38 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=8.5
Q ss_pred hccccCcEecccCcccCCccc
Q 008415 273 KALEKLRYLNLDYTRFLSIIP 293 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~lP 293 (566)
++|++|++|++++| .++.+|
T Consensus 21 ~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 21 SNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TTCTTSSEEEETSS-CCSBEG
T ss_pred hCCCCCCEEEecCC-CCCCCc
Confidence 44444444444444 344333
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=6.6e-07 Score=92.61 Aligned_cols=102 Identities=30% Similarity=0.357 Sum_probs=60.7
Q ss_pred cccEEEeecCCccc-ccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 200 GAKRVSLMGNGIRS-LSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
.+..+++..|.+.. ......+.+|..|++.+|.+..+... +..+++|++|++++| .|+.+.. +..+..|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~--------l~~l~~L 142 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG--------LSTLTLL 142 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc--------hhhccch
Confidence 34444455555544 22245566666666666666655543 455666666666666 6665543 4555666
Q ss_pred cEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
+.|++.+| .++.++. +..+++|+.+++.++.+.
T Consensus 143 ~~L~l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 143 KELNLSGN-LISDISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhheeccC-cchhccC--CccchhhhcccCCcchhh
Confidence 66666666 5666665 556666666666666554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1.5e-06 Score=81.05 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=29.5
Q ss_pred ccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC---CchhhccCCcceEeEecccCcccc
Q 008415 390 MENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD---LTWLVFVQNLKVLRIGDCYDMEEI 462 (566)
Q Consensus 390 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~---l~~l~~l~~L~~L~L~~~~~l~~i 462 (566)
+|++..+.+..|+++....+ -+...++.+--|.|.. +++.+ +..+..+|.|..|.+.+.+..+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~e-------k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSE-------KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccchhhc-------ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 45566666655553322111 1112344444444433 22332 233555666666666665554433
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.99 E-value=1.6e-05 Score=86.36 Aligned_cols=106 Identities=25% Similarity=0.401 Sum_probs=84.9
Q ss_pred cccEEEeecCCccc-cc-CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 200 GAKRVSLMGNGIRS-LS-EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~-l~-~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.++.|.+.++.+.. +| .+..+++|+.|++++|.+. .+|.. ++.+++|++|+|++| .+. ..+|..+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~ls------g~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFN------GSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCC------CCCchHHhcCC
Confidence 47788888888764 33 4578999999999999887 67777 899999999999999 886 34566679999
Q ss_pred cCcEecccCcccCCccchhhhcC-CCCCcEEEecCCCCc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISG-FSKLEVLRLFGCGFW 314 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~-L~~L~~L~l~~~~~~ 314 (566)
+|++|+|++|..-..+|.. ++. +.++..+++.+|...
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCEEECcCCcccccCChH-HhhccccCceEEecCCccc
Confidence 9999999999444478987 665 457788888877543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=9.7e-06 Score=54.06 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccc
Q 008415 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263 (566)
Q Consensus 221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~ 263 (566)
++|++|++++|++.++|.. +++|++|++|++++| .++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCcC
Confidence 5799999999999999987 899999999999999 8887653
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=1.7e-06 Score=93.67 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=29.5
Q ss_pred hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
.+++||+.||+++| +++.+.. |++|++||+|.+.+-.+.. ...+.+|-+|++|+.|+|+
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl~G--IS~LknLq~L~mrnLe~e~-------------~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNLSG--ISRLKNLQVLSMRNLEFES-------------YQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred hccCccceeecCCC-CccCcHH--HhccccHHHHhccCCCCCc-------------hhhHHHHhcccCCCeeecc
Confidence 34455555555555 5555522 5555555555555443321 1344455555555555555
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=4.5e-06 Score=79.67 Aligned_cols=94 Identities=14% Similarity=0.084 Sum_probs=54.8
Q ss_pred ccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC------ch-hhccCCcceEeEeccc
Q 008415 386 HLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL------TW-LVFVQNLKVLRIGDCY 457 (566)
Q Consensus 386 ~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~-l~~l~~L~~L~L~~~~ 457 (566)
.+..+++|+.|++..|. ...-... . --..+.+++|+.|++.+|. +++= .. -...|+|+.|.+.+|.
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~-L----akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVA-L----AKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHH-H----HHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 46677888888888877 2210000 0 0112456788889888884 3331 11 2337888888888875
Q ss_pred CcccccccccccccccccCCCCccccccceeeccccc
Q 008415 458 DMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT 494 (566)
Q Consensus 458 ~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~ 494 (566)
.-..-.. .+......-|.|+.|.|+++.
T Consensus 282 It~da~~---------~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 282 ITRDAAL---------ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hHHHHHH---------HHHHHHhcchhhHHhcCCccc
Confidence 4332110 011234457888888888764
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=2.7e-06 Score=88.11 Aligned_cols=108 Identities=23% Similarity=0.362 Sum_probs=93.1
Q ss_pred ccccccccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
...+.++..+++..|.++.+.. ...+++|++|++++|.|.++.. +..+..|+.|++++| .|..++. +.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~--------~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG--------LE 159 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC--------Cc
Confidence 4456789999999999999988 8899999999999999998876 788899999999999 9988664 45
Q ss_pred ccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcc
Q 008415 274 ALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 274 ~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~ 315 (566)
.+++|+.+++++| .+..+.. . ...+.+|+.+++.++.+..
T Consensus 160 ~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 6899999999999 7888877 2 3789999999999887754
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=3.9e-05 Score=76.77 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=41.6
Q ss_pred ccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCchhh
Q 008415 365 SITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLV 443 (566)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~ 443 (566)
.++..|+++. |. ...+ +.+ .++|++|.+.+|. +..+|. ...++|++|.+++|..+..+|
T Consensus 52 ~~l~~L~Is~-c~-L~sL--P~L--P~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 52 RASGRLYIKD-CD-IESL--PVL--PNELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred cCCCEEEeCC-CC-Cccc--CCC--CCCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCcccccccc---
Confidence 6777888887 52 2222 111 2368888888877 655431 123578888888887666554
Q ss_pred ccCCcceEeEe
Q 008415 444 FVQNLKVLRIG 454 (566)
Q Consensus 444 ~l~~L~~L~L~ 454 (566)
++|+.|.|.
T Consensus 112 --~sLe~L~L~ 120 (426)
T PRK15386 112 --ESVRSLEIK 120 (426)
T ss_pred --cccceEEeC
Confidence 457777765
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=2.7e-06 Score=88.33 Aligned_cols=101 Identities=26% Similarity=0.399 Sum_probs=63.6
Q ss_pred CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCC
Q 008415 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGF 300 (566)
Q Consensus 221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L 300 (566)
..|.+.++++|.+..+..+ +.-++.|+.|||++| .+++.. .+..|++|++|||++| .++.+|.-....+
T Consensus 164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~--------~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD--------NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC 232 (1096)
T ss_pred hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH--------HHHhcccccccccccc-hhccccccchhhh
Confidence 3455666666666555554 666777777777777 666533 2566777777777777 6777776112233
Q ss_pred CCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 301 SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
. |+.|.+++|... .+.++.+|.+|+.|+++.+
T Consensus 233 ~-L~~L~lrnN~l~----------------tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALT----------------TLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred h-heeeeecccHHH----------------hhhhHHhhhhhhccchhHh
Confidence 3 777777776553 3455666666666666644
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=6e-06 Score=78.82 Aligned_cols=258 Identities=17% Similarity=0.148 Sum_probs=130.6
Q ss_pred CCCCCCccEEEecCCcccc----cchHHHhcCccCCEEecCCC--C-CCccccccccccCcchhccccCcEecccCcccC
Q 008415 217 IPTCPRLVTLLLGGNRIEE----ITDGFFQSMSTLRVLSLRIN--I-SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFL 289 (566)
Q Consensus 217 ~~~~~~Lr~L~l~~~~l~~----lp~~~~~~l~~Lr~L~L~~~--~-~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l 289 (566)
...+..+..++|+||.+.. .-...+.+.+.||.-+|+.- . ....+|+.+..|-..+-..++|++|||++| .+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-cc
Confidence 3455566666666664421 11222555667777777643 0 122334333333333444567888888877 33
Q ss_pred Cc--cc--hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC-CCCCceEEEEEcCccchhccccCCccc
Q 008415 290 SI--IP--HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG-SKHLNVLSWTFRSSLGVQNFLKYPKLV 364 (566)
Q Consensus 290 ~~--lP--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~i~~~~~~~~~~~~~~~~~~ 364 (566)
.. ++ .+.|.+++.|++|++.+|++... .-..++. |..| .. .......
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~--------------ag~~l~~al~~l---~~-----------~kk~~~~ 156 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPE--------------AGGRLGRALFEL---AV-----------NKKAASK 156 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChh--------------HHHHHHHHHHHH---HH-----------HhccCCC
Confidence 21 22 12367788888888888877541 1111110 0000 00 0001111
Q ss_pred ccceEEEEecccCCCCCee---e-eccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC--
Q 008415 365 SITQSVLVKSGVHTSPPFN---V-LHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-- 438 (566)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~---~-~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-- 438 (566)
..|+.+..++ ++..... + ..++.++.|+.+.+..+.+..-..... .......++|+.|+|.+...-..
T Consensus 157 ~~Lrv~i~~r--Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al----~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 157 PKLRVFICGR--NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL----AEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred cceEEEEeec--cccccccHHHHHHHHHhccccceEEEecccccCchhHHH----HHHHHhCCcceeeecccchhhhHHH
Confidence 3444444443 1111111 1 135666788888888777321111000 01224678999999988432222
Q ss_pred --C-chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc-----cCCCCCCCCCcc
Q 008415 439 --L-TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS-----VYPNPLPFPKLK 510 (566)
Q Consensus 439 --l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~-----l~~~~~~~p~L~ 510 (566)
+ ..+..+|+|++|++.+|-. +.-+...+.. .-...+|+|+.|.+.++. .+. +.......|.|+
T Consensus 231 ~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~-------al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCLL-ENEGAIAFVD-------ALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLE 301 (382)
T ss_pred HHHHHHhcccchheeeccccccc-ccccHHHHHH-------HHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhH
Confidence 1 1256678899999998843 2221111100 112358999999988764 221 111223478999
Q ss_pred EEeecCCC
Q 008415 511 KIDVCHCP 518 (566)
Q Consensus 511 ~L~i~~C~ 518 (566)
.|.+.+|.
T Consensus 302 kLnLngN~ 309 (382)
T KOG1909|consen 302 KLNLNGNR 309 (382)
T ss_pred HhcCCccc
Confidence 99998874
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=7.8e-05 Score=74.69 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=44.4
Q ss_pred ccccccEEEeecCCcccccCCCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCCCCCccccccc
Q 008415 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i 265 (566)
.+.++++|+++++.++.+|.+ .++|++|.+.+| .+..+|.. + ..+|++|++++|..+..+|+++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccccc
Confidence 446778888888888777732 246888888876 56667765 2 3578888888875666666543
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=1.5e-06 Score=90.25 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=57.0
Q ss_pred cccccEEEeecCCcccccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 198 WEGAKRVSLMGNGIRSLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
|.++..+++.+|.+..+... .-++.|+.|+|+.|++.+.. ++..+++|++|||++| .+..+|.-- ...+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~------~~gc~ 233 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLS------MVGCK 233 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccc------hhhhh
Confidence 45555566666655544322 33456666666666655543 2566666666666666 665555311 12222
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
|+.|.+++| .++.+-. |.+|.+|+.|+++.|-+.
T Consensus 234 -L~~L~lrnN-~l~tL~g--ie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 234 -LQLLNLRNN-ALTTLRG--IENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred -heeeeeccc-HHHhhhh--HHhhhhhhccchhHhhhh
Confidence 666666666 5555554 566666666666555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00014 Score=64.45 Aligned_cols=107 Identities=28% Similarity=0.350 Sum_probs=69.1
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
....+++.+|++..++.+..+++|.+|.+.+|.|..+.+.+-..+++|..|.|.+| .|.++-+- ..+..++.|+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl-----~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDL-----DPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhc-----chhccCCccc
Confidence 45567777777777777778888888888888777777664445667888888877 66654321 1134556677
Q ss_pred EecccCcccCCccch---hhhcCCCCCcEEEecCCCC
Q 008415 280 YLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~~~~~ 313 (566)
+|.+-+| .++.-+. -++.++++|++|++.+...
T Consensus 117 ~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 117 YLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeeecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence 7777666 4444332 2356667777777665443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00021 Score=63.41 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=82.7
Q ss_pred CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-hhhc
Q 008415 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLIS 298 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~ 298 (566)
..+...++|.+|++..++. |..++.|..|.|++| +|+.+.+.+ -..+++|..|.+.+| +|.++.+ .-+.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L------~~~~p~l~~L~LtnN-si~~l~dl~pLa 110 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDL------DTFLPNLKTLILTNN-SIQELGDLDPLA 110 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccch------hhhccccceEEecCc-chhhhhhcchhc
Confidence 4567789999998887765 788999999999999 999887765 456678999999998 7777654 1167
Q ss_pred CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 299 GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 299 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
.+++|++|.+-+|.+... ......-+..+++|+.|+....
T Consensus 111 ~~p~L~~Ltll~Npv~~k-----------~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHK-----------KNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCchhcc-----------cCceeEEEEecCcceEeehhhh
Confidence 788999999998877542 2233344667788888887743
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=4.5e-05 Score=63.18 Aligned_cols=87 Identities=28% Similarity=0.379 Sum_probs=68.8
Q ss_pred ccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
..+..+++++|.++.+|. ..+++.+.+|.+.+|.+.++|.. +..++.||.|+++.| .+...|.. |..|.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~v-------i~~L~ 123 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRV-------IAPLI 123 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHH-------HHHHH
Confidence 356678888888887764 25677888888888888888888 888899999999888 88666654 46688
Q ss_pred cCcEecccCcccCCccchh
Q 008415 277 KLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~ 295 (566)
+|-+|+..++ .+..||-+
T Consensus 124 ~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred hHHHhcCCCC-ccccCcHH
Confidence 8888888888 67777765
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.11 E-value=9e-05 Score=78.59 Aligned_cols=117 Identities=24% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCCCccEEEecCC-cccccc-hHHHhcCccCCEEecCCC-CCCccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415 219 TCPRLVTLLLGGN-RIEEIT-DGFFQSMSTLRVLSLRIN-ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 219 ~~~~Lr~L~l~~~-~l~~lp-~~~~~~l~~Lr~L~L~~~-~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~ 295 (566)
.+++|+.|.+.++ .+.... ..+...+++|+.|+++++ ..+...+. ..+.....+.+|+.|++++|..++..--.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL---LLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh---HhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 3677777777776 333311 223566778888888762 12222121 01112345577888888887445543322
Q ss_pred hhc-CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 296 LIS-GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 296 ~i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
.+. .+++|++|.+.+|.... +.....-....++|+.|+++.+.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt------------~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT------------DEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhhCCCcceEccCCCCccc------------hhHHHHHHHhcCcccEEeeecCc
Confidence 233 36788888877676321 12233334456667777777554
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=6.9e-05 Score=62.10 Aligned_cols=105 Identities=22% Similarity=0.256 Sum_probs=81.8
Q ss_pred ccEEEeecCCccccc----CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 201 AKRVSLMGNGIRSLS----EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 201 lr~Lsl~~~~~~~l~----~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
...+.++++.+-.++ ....-.+|...++++|.+.++|..+..+++-+..|+|++| .|..+|.. +..++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-------~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-------LAAMP 100 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-------HhhhH
Confidence 344555555544333 2356678899999999999999997778889999999999 88776654 58889
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
.|+.|+++.| .+...|.- |..|.+|-.|+..++....
T Consensus 101 aLr~lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 101 ALRSLNLRFN-PLNAEPRV-IAPLIKLDMLDSPENARAE 137 (177)
T ss_pred HhhhcccccC-ccccchHH-HHHHHhHHHhcCCCCcccc
Confidence 9999999999 78888885 7779999999888776644
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00046 Score=64.83 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=21.9
Q ss_pred cccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCc
Q 008415 275 LEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~ 314 (566)
.++++.|||.+| .|..-.+ .++.+|+.|++|+++.|...
T Consensus 70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 356666666666 5554332 12455666666666655543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00066 Score=73.93 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=85.6
Q ss_pred ccccEEEeecCCcc--ccc--CCCCCCCccEEEecCCccc--ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 199 EGAKRVSLMGNGIR--SLS--EIPTCPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~--~l~--~~~~~~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
.++++|++.+...- ..+ ....+|.||+|.+.+-.+. ++. ....++++|+.||+|++ +++.+ .+|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~T-nI~nl--------~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGT-NISNL--------SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCC-CccCc--------HHH
Confidence 57888888764321 111 2367899999999886442 222 23677899999999999 88876 237
Q ss_pred hccccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 273 KALEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
++|+||+.|.+++= .+..-+. + +-.|++|++||++........ .+ ...-++--..|++||.|++++..
T Consensus 192 S~LknLq~L~mrnL-e~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~----~i----i~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNL-EFESYQDLID-LFNLKKLRVLDISRDKNNDDT----KI----IEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccccHHHHhccCC-CCCchhhHHH-HhcccCCCeeeccccccccch----HH----HHHHHHhcccCccccEEecCCcc
Confidence 99999999988776 4443221 3 778999999999876654410 00 00112222357888888888543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00061 Score=63.09 Aligned_cols=108 Identities=24% Similarity=0.347 Sum_probs=72.3
Q ss_pred ccccccEEEeecCCcccccCCCCCCCccEEEecCC--ccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGN--RIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~--~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
.+..+..+++.+..+..+..+..+++|+.|.++.| .+. .++.- ..++++|++|+|++| .|.. ++++ ....
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~-lstl----~pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD-LSTL----RPLK 113 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc-cccc----chhh
Confidence 34567777777777777888888899999999888 333 33332 455689999999998 7664 2222 1246
Q ss_pred ccccCcEecccCcccCCccc---hhhhcCCCCCcEEEecCCC
Q 008415 274 ALEKLRYLNLDYTRFLSIIP---HQLISGFSKLEVLRLFGCG 312 (566)
Q Consensus 274 ~L~~L~~L~L~~~~~l~~lP---~~~i~~L~~L~~L~l~~~~ 312 (566)
.+.||..|++.+| ..+.+- ..++.-+++|..|+-....
T Consensus 114 ~l~nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 114 ELENLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcchhhhhcccC-CccccccHHHHHHHHhhhhccccccccC
Confidence 7778888888888 444443 2335567777777765543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00014 Score=67.45 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=43.3
Q ss_pred CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-hhhcCC
Q 008415 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLISGF 300 (566)
Q Consensus 222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L 300 (566)
+.+.|.+.||.+..+. +..+|+.|.+|.|+-| .|+.|.+ +..+++|+.|.|+.| .|..+.. ..+.+|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~p--------l~rCtrLkElYLRkN-~I~sldEL~YLknl 87 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLAP--------LQRCTRLKELYLRKN-CIESLDELEYLKNL 87 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccchh--------HHHHHHHHHHHHHhc-ccccHHHHHHHhcC
Confidence 4445555555554443 2455666666666666 5555433 455566666666666 4555443 114556
Q ss_pred CCCcEEEecCCCC
Q 008415 301 SKLEVLRLFGCGF 313 (566)
Q Consensus 301 ~~L~~L~l~~~~~ 313 (566)
++|++|.+..|..
T Consensus 88 psLr~LWL~ENPC 100 (388)
T KOG2123|consen 88 PSLRTLWLDENPC 100 (388)
T ss_pred chhhhHhhccCCc
Confidence 6666666655443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.00016 Score=67.22 Aligned_cols=103 Identities=27% Similarity=0.322 Sum_probs=82.4
Q ss_pred cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK 277 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~ 277 (566)
+.+++.|.+.++++.++....+++.|++|.|+-|+++.+.. +..|++|+-|.|..| .|.++.+- .-+.+|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL-----~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDEL-----EYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHH-----HHHhcCch
Confidence 35788889999999988878999999999999999988865 789999999999999 88776542 23578899
Q ss_pred CcEecccCcccCCccch----hhhcCCCCCcEEEe
Q 008415 278 LRYLNLDYTRFLSIIPH----QLISGFSKLEVLRL 308 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~----~~i~~L~~L~~L~l 308 (566)
|+.|-|..|.....-+. .++.-|++|+.|+=
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99999988765554443 34566888888864
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.0004 Score=73.63 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=57.4
Q ss_pred HhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccC-cccCCccc---hhhhcCCCCCcEEEecCCCCccc
Q 008415 241 FQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDY-TRFLSIIP---HQLISGFSKLEVLRLFGCGFWVV 316 (566)
Q Consensus 241 ~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~-~~~l~~lP---~~~i~~L~~L~~L~l~~~~~~~~ 316 (566)
...++.|+.|.+.++..+.... +-......++|+.|++++ |......+ ......+++|+.|++..+....
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is- 257 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS-----LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT- 257 (482)
T ss_pred HhhCchhhHhhhcccccCChhh-----HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-
Confidence 3446777777777664444311 111235667777777776 22222222 1113445777777777766321
Q ss_pred ccccccccccCccchHhhhcC-CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCC
Q 008415 317 TEEEGNVLCEDAEPLMKELLG-SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT 378 (566)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 378 (566)
...+..+.. .++|+.|.+..+.......+.......+.|+.|++.+ |..
T Consensus 258 ------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~ 307 (482)
T KOG1947|consen 258 ------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG-CHG 307 (482)
T ss_pred ------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec-Ccc
Confidence 134444433 4566666644332212222222222234566666665 543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0039 Score=57.89 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=55.1
Q ss_pred CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC---ccch
Q 008415 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS---IIPH 294 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~---~lP~ 294 (566)
..+..|..|++.+..++.+.. +..|++|++|.++.| ...-- ..++-...++++|++|++++| +++ .+++
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn-~~~~~----~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p 111 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDN-YRRVS----GGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP 111 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCC-ccccc----ccceehhhhCCceeEEeecCC-ccccccccch
Confidence 445566666666665554433 556788888888877 22100 223333466688888888888 554 3444
Q ss_pred hhhcCCCCCcEEEecCCCCcc
Q 008415 295 QLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 295 ~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+..+.+|..|++++|....
T Consensus 112 --l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 --LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred --hhhhcchhhhhcccCCccc
Confidence 5667777788888776543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0054 Score=33.92 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=9.0
Q ss_pred CcEecccCcccCCccchh
Q 008415 278 LRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~~ 295 (566)
|++||+++| .++.+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555555 45555554
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.40 E-value=0.035 Score=51.86 Aligned_cols=96 Identities=26% Similarity=0.277 Sum_probs=54.6
Q ss_pred CCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCC--C-CCccccccccccCcchhccccCcEecccCcccCC
Q 008415 219 TCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRIN--I-SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS 290 (566)
Q Consensus 219 ~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~--~-~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~ 290 (566)
.+..+..++++||.+.. +... +.+-++||+-+++.- . .-..+|+++.-|-..+-++++|+..+|++|..-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35566666677664432 2222 455566777766643 0 1123444333333445567788888888873333
Q ss_pred ccch---hhhcCCCCCcEEEecCCCCcc
Q 008415 291 IIPH---QLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 291 ~lP~---~~i~~L~~L~~L~l~~~~~~~ 315 (566)
..|+ +.|++-+.|.+|.+.+|+.-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 3443 336777888888888887643
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.026 Score=28.94 Aligned_cols=9 Identities=56% Similarity=0.667 Sum_probs=3.5
Q ss_pred CCEEecCCC
Q 008415 247 LRVLSLRIN 255 (566)
Q Consensus 247 Lr~L~L~~~ 255 (566)
||.|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.19 E-value=0.019 Score=31.71 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=11.7
Q ss_pred cCCEEecCCCCCCcccccc
Q 008415 246 TLRVLSLRINISLRKLPSG 264 (566)
Q Consensus 246 ~Lr~L~L~~~~~i~~lp~~ 264 (566)
+|++||+++| .++.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4677777777 66666554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.11 E-value=0.028 Score=28.81 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=10.5
Q ss_pred ccCcEecccCcccCCccc
Q 008415 276 EKLRYLNLDYTRFLSIIP 293 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP 293 (566)
++|+.|++++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 46888888888 588776
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.65 E-value=0.19 Score=42.32 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI 297 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i 297 (566)
..+.+|+.+.+.. .+..++...|..+.+|+.+.+.++ +..++... +.++.+|+.+.+.. .+..++..++
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~------F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNA------FSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTT------TTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceee------eecccccccccccc--cccccccccc
Confidence 3444555555543 244444444555555555555432 33333322 44444555555543 2444444434
Q ss_pred cCCCCCcEEEec
Q 008415 298 SGFSKLEVLRLF 309 (566)
Q Consensus 298 ~~L~~L~~L~l~ 309 (566)
..+++|+.+.+.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 445555555554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.19 E-value=0.26 Score=41.42 Aligned_cols=99 Identities=13% Similarity=0.308 Sum_probs=58.3
Q ss_pred ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 199 EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.+++.+.+.. .+..+. .+..+.+|+.+.+.++ +..++...|.+++.|+.+.+.. .+..++... +..+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~------F~~~~ 81 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNA------FSNCT 81 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTT------TTT-T
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccc------ccccc
Confidence 4666666653 455554 3567778999998775 7778877788888899998864 455555443 66788
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecC
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 310 (566)
+|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 8998888654 677877667777 888888764
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.016 Score=51.69 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCcccEEecccCcCCCC--CchhhccCCcceEeEecc
Q 008415 422 FRSLNTVSVHYCRKAKD--LTWLVFVQNLKVLRIGDC 456 (566)
Q Consensus 422 l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~ 456 (566)
.++|+.|+|++|+.+++ +-++..+++|+.|.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 34444444444444443 233444444444444443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.20 E-value=0.12 Score=29.77 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=12.6
Q ss_pred cccCcEecccCcccCCccchh
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~ 295 (566)
|++|++|++++| .++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 345666666666 66666665
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.20 E-value=0.12 Score=29.77 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=12.6
Q ss_pred cccCcEecccCcccCCccchh
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~ 295 (566)
|++|++|++++| .++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 345666666666 66666665
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.65 E-value=0.21 Score=46.93 Aligned_cols=111 Identities=21% Similarity=0.187 Sum_probs=68.2
Q ss_pred cccccEEEeecCCcccc------cCCCCCCCccEEEecCCcc----cccchH------HHhcCccCCEEecCCCCCCc-c
Q 008415 198 WEGAKRVSLMGNGIRSL------SEIPTCPRLVTLLLGGNRI----EEITDG------FFQSMSTLRVLSLRINISLR-K 260 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l------~~~~~~~~Lr~L~l~~~~l----~~lp~~------~~~~l~~Lr~L~L~~~~~i~-~ 260 (566)
+..+..+.+++|.+.+- ..+..-.+||+..++.-.. .++++. .+-+|++|+..+||.| -+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence 46778888888877531 1235567788887776411 123322 2567889999999988 554 3
Q ss_pred ccccccccCcchhccccCcEecccCcccCCccchhhhc-------------CCCCCcEEEecCCCC
Q 008415 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS-------------GFSKLEVLRLFGCGF 313 (566)
Q Consensus 261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~-------------~L~~L~~L~l~~~~~ 313 (566)
.|+ .|-.-|.+-++|.+|.+++| .+.-+..+-|+ .-+.|++.....|+.
T Consensus 108 ~~e---~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 108 FPE---ELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cch---HHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 332 22233566688999999998 77665543343 345566666655554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.55 E-value=0.015 Score=53.08 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415 217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296 (566)
Q Consensus 217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~ 296 (566)
+..+....+|+++.+.+..+... |+.+..|..|+++.+ .+..+|. +++++..++++++..| +.+..|.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~-------d~~q~~e~~~~~~~~n-~~~~~p~s- 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPK-------DAKQQRETVNAASHKN-NHSQQPKS- 106 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChh-------hHHHHHHHHHHHhhcc-chhhCCcc-
Confidence 34555666666666655555555 566666666777766 6644443 3466666666666666 66666766
Q ss_pred hcCCCCCcEEEecCCCC
Q 008415 297 ISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 297 i~~L~~L~~L~l~~~~~ 313 (566)
.+++++++.++..++..
T Consensus 107 ~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccCCcchhhhccCcc
Confidence 66677777766666554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.56 E-value=0.27 Score=28.26 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=15.5
Q ss_pred CccCCEEecCCCCCCccccccc
Q 008415 244 MSTLRVLSLRINISLRKLPSGI 265 (566)
Q Consensus 244 l~~Lr~L~L~~~~~i~~lp~~i 265 (566)
+++|++|+|++| .++.+|..+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 457888888888 887777643
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.56 E-value=0.27 Score=28.26 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=15.5
Q ss_pred CccCCEEecCCCCCCccccccc
Q 008415 244 MSTLRVLSLRINISLRKLPSGI 265 (566)
Q Consensus 244 l~~Lr~L~L~~~~~i~~lp~~i 265 (566)
+++|++|+|++| .++.+|..+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 457888888888 887777643
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.43 E-value=0.081 Score=47.42 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=25.1
Q ss_pred ccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415 390 MENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439 (566)
Q Consensus 390 ~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 439 (566)
.++|+.|+|++|. +++-.. .....|++|+.|.|.+.+....+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL--------~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGL--------ACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchheeeccCCCeechhHH--------HHHHHhhhhHHHHhcCchhhhch
Confidence 3577777777777 543221 12245677777777776655554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.84 E-value=0.05 Score=49.68 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=67.9
Q ss_pred ccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 195 FEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
+..+++++.|+++.|....+. .++.+..|..|+++.+.+..+|.+ ++....++.+++..| +.+.+| .+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p-------~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQP-------KSQK 108 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCC-------cccc
Confidence 345578888888888765543 346667888899999999999998 899999999999988 776555 4569
Q ss_pred ccccCcEecccCcc
Q 008415 274 ALEKLRYLNLDYTR 287 (566)
Q Consensus 274 ~L~~L~~L~L~~~~ 287 (566)
++++++++++.++.
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 99999999999984
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.88 E-value=1 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.768 Sum_probs=13.0
Q ss_pred CCCccEEeecCCCCCCC
Q 008415 506 FPKLKKIDVCHCPQLKK 522 (566)
Q Consensus 506 ~p~L~~L~i~~C~~L~~ 522 (566)
+|+|++|++.+|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36788888888887763
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.12 E-value=2.4 Score=24.37 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=9.4
Q ss_pred cCCEEecCCCCCCccccc
Q 008415 246 TLRVLSLRINISLRKLPS 263 (566)
Q Consensus 246 ~Lr~L~L~~~~~i~~lp~ 263 (566)
+|++|++++| .+++||+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 4555555555 5555553
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.83 E-value=7.8 Score=22.32 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=7.0
Q ss_pred ccCCEEecCCCCCCc
Q 008415 245 STLRVLSLRINISLR 259 (566)
Q Consensus 245 ~~Lr~L~L~~~~~i~ 259 (566)
.+|+.|+|++| .|+
T Consensus 2 ~~L~~L~L~~N-kI~ 15 (26)
T smart00365 2 TNLEELDLSQN-KIK 15 (26)
T ss_pred CccCEEECCCC-ccc
Confidence 34555555555 443
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.06 E-value=5.2 Score=22.20 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=3.6
Q ss_pred cCCEEecCCC
Q 008415 246 TLRVLSLRIN 255 (566)
Q Consensus 246 ~Lr~L~L~~~ 255 (566)
+|++|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4444444444
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.45 E-value=14 Score=21.47 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=8.4
Q ss_pred ccCCEEecCCCCCCc
Q 008415 245 STLRVLSLRINISLR 259 (566)
Q Consensus 245 ~~Lr~L~L~~~~~i~ 259 (566)
++|++|+|++| .+.
T Consensus 2 ~~L~~LdL~~N-~i~ 15 (28)
T smart00368 2 PSLRELDLSNN-KLG 15 (28)
T ss_pred CccCEEECCCC-CCC
Confidence 35666666666 543
No 89
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=43.77 E-value=37 Score=26.01 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=35.9
Q ss_pred ccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 110 VSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 110 ~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
-.||. +.-.++|.+.+..|.+.....|..+-..|.+.++|..+
T Consensus 25 ~~y~~cF~GselVdWL~~~~~~~sR~eAv~lg~~Ll~~G~i~HV 68 (83)
T cd04443 25 RTYKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGVLQHI 68 (83)
T ss_pred eeccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEec
Confidence 45666 78889999888778877765699999999999999987
No 90
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.08 E-value=59 Score=32.68 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHHHhhHHHhhhchHHHHHHHhcccccCccccCCCCChHHHH-HHHHh
Q 008415 70 QVAGWLEDVQKLETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLI-DYWIS 126 (566)
Q Consensus 70 ~~~~W~~~~~~l~~~~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~i~~~~Li-~~wia 126 (566)
...-|...++.++.....+..| .-+-.+|..|| |-|+.-.+++|+ +.|+.
T Consensus 292 E~~RW~~~~~~l~~~~~~l~GD---~llaaa~isY~----G~f~~~~R~~l~~~~W~~ 342 (344)
T PF12777_consen 292 EKERWSEQIEELEEQLKNLVGD---SLLAAAFISYL----GPFTPEYRQELLKKMWKP 342 (344)
T ss_dssp HHHCCHCHHHHHHHHHHHHHHH---HHHHHHHHHCC----CCTSHHHHHHHHHHH---
T ss_pred hhhhHHHHHHHHHHHhcccHHH---HHHHHHHHHHc----CCCCHHHHHHHHHHhccc
Confidence 3456999988888888887664 44556676899 999996667777 57874
No 91
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=38.77 E-value=1.8e+02 Score=22.63 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHH----HHHHHHH-HHHhccccccCcchhhHHHHHHHHHHhh
Q 008415 38 LETELHKLTRARA----DLKTKVE-IEEQRPRTRRTNQVAGWLEDVQKLETEY 85 (566)
Q Consensus 38 l~~~~~~L~~i~~----~i~~k~~-la~~~g~l~~~~~~~~W~~~~~~l~~~~ 85 (566)
+..++++|++--+ .-+.|.. +|+++|+.-..-+-++|..+++.+-..+
T Consensus 7 I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RF 59 (92)
T PF07820_consen 7 IREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARF 59 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHH
Confidence 3444444444333 3344443 6778896666778899999987776544
No 92
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=37.80 E-value=42 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=34.3
Q ss_pred cCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 111 SNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 111 ~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
.||. +.-.++|.+.+..|.+.....|..+-..|.+.++|+.+
T Consensus 28 ~y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~HV 70 (85)
T cd04441 28 KYERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQHV 70 (85)
T ss_pred EcCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEec
Confidence 3444 56678999999998766666699999999999999987
No 93
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=35.15 E-value=56 Score=25.67 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=34.6
Q ss_pred cCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 111 SNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 111 ~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
.||+ +--.++|.+.+..|-+.....|..|-..|.+.++|..+
T Consensus 33 ~y~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~gii~HV 75 (93)
T cd04440 33 TYKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNNGFMHHV 75 (93)
T ss_pred EcccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 3444 55678999999999888666699999999999999886
No 94
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=32.73 E-value=42 Score=21.65 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=19.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008415 31 LEKNLRVLETELHKLTRARADLKTKVEIE 59 (566)
Q Consensus 31 ~~~~~~~l~~~~~~L~~i~~~i~~k~~la 59 (566)
+..|...|..+.-=-..++++|+..||.-
T Consensus 8 ~H~n~~~L~~~f~ip~~vAk~IV~~C~~C 36 (40)
T PF02022_consen 8 YHSNAKALRHKFGIPRLVAKQIVNQCPKC 36 (40)
T ss_dssp HHH-HHHHHHHHT--HHHHHHHHHHSCCH
T ss_pred HccCHHHHHHHHccCHHHHHHHHHHCHHH
Confidence 45566667666666678999999999743
No 95
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=31.41 E-value=76 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=35.1
Q ss_pred ccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 110 VSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 110 ~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
..||. +.-.++|.+.+..|.+..+..|..+-..|.+.++|+++
T Consensus 23 ~~y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i~hV 66 (81)
T cd04448 23 RTYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGWIECV 66 (81)
T ss_pred EEcCcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEec
Confidence 44555 67779999999888776655599999999999999987
No 96
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=31.12 E-value=60 Score=23.93 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=35.6
Q ss_pred ccCCC-CChHHHHHHHHh--cCCCcccccHhHHHHHHHHccccccc
Q 008415 110 VSNSE-IPKRQLIDYWIS--EGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 110 ~~Fp~-i~~~~Li~~wia--egfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
..||. +.-.++|.+.+. +|++.....|..+-..|++.++|..+
T Consensus 12 ~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g~i~~v 57 (74)
T PF00610_consen 12 KTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDHGFIEHV 57 (74)
T ss_dssp EEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHCTSEEES
T ss_pred EEcCCEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHCCCEEEC
Confidence 45566 778889998886 77777766699999999999999987
No 97
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=26.43 E-value=87 Score=23.96 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=34.8
Q ss_pred ccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 110 VSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 110 ~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
-.||+ +.-.++|.+.+..|.+.....|..+-..|.+.++|..+
T Consensus 23 r~y~~cF~GselVdWL~~~~~~~sR~eAv~lgq~Ll~~gvi~HV 66 (82)
T cd04442 23 RTYPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDHSIIHHV 66 (82)
T ss_pred EEcCceeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEec
Confidence 34555 66778999999988875555599999999999999987
No 98
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=25.16 E-value=1e+02 Score=24.97 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.6
Q ss_pred CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 115 IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 115 i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
+--.++|.+.|.+++...+..|..+=..|++.++|+++
T Consensus 32 F~Gse~VDWLv~~~~~i~R~EAv~l~q~Lmd~gli~hV 69 (109)
T cd04444 32 FLGSALVDWLISNSFAASRLEAVTLASMLMEENFLRPV 69 (109)
T ss_pred ccchHHHHHHHHCCCCCCHHHHHHHHHHHHhCCchhhH
Confidence 45568899889998877555599999999999999986
No 99
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=23.35 E-value=1.1e+02 Score=23.30 Aligned_cols=43 Identities=9% Similarity=0.271 Sum_probs=35.3
Q ss_pred ccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 110 VSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 110 ~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
..||. +.-.++|.+.+..+.+.....|..+-+.|.+.++|..+
T Consensus 23 ~~~~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~i~HV 66 (81)
T cd04439 23 STFPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGIIHHV 66 (81)
T ss_pred EEcCceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEec
Confidence 56677 78889999777788776654599999999999999987
Done!