Query 008415
Match_columns 566
No_of_seqs 399 out of 3629
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 4.7E-23 1.6E-27 211.0 20.8 278 197-525 43-335 (390)
2 2id5_A Lingo-1, leucine rich r 99.9 1.8E-22 6E-27 212.5 24.3 305 181-537 15-325 (477)
3 4fmz_A Internalin; leucine ric 99.9 1.6E-22 5.6E-27 203.6 22.1 291 183-540 50-341 (347)
4 3oja_B Anopheles plasmodium-re 99.9 3.1E-22 1.1E-26 216.3 20.1 278 198-526 50-342 (597)
5 3o6n_A APL1; leucine-rich repe 99.9 2.8E-22 9.7E-27 205.2 18.5 295 181-518 49-350 (390)
6 4fmz_A Internalin; leucine ric 99.9 3.4E-22 1.2E-26 201.2 18.8 284 194-544 39-323 (347)
7 4fcg_A Uncharacterized protein 99.9 5.5E-22 1.9E-26 197.7 19.1 241 219-551 79-320 (328)
8 3v47_A TOLL-like receptor 5B a 99.9 3.6E-21 1.2E-25 201.2 23.6 313 179-540 12-403 (455)
9 3oja_B Anopheles plasmodium-re 99.9 7E-22 2.4E-26 213.5 18.5 295 181-518 55-356 (597)
10 2z63_A TOLL-like receptor 4, v 99.9 3.3E-20 1.1E-24 199.6 26.3 129 182-314 12-162 (570)
11 1o6v_A Internalin A; bacterial 99.9 3.7E-20 1.3E-24 194.0 25.2 283 185-517 54-363 (466)
12 3t6q_A CD180 antigen; protein- 99.9 2.6E-20 8.7E-25 202.1 22.8 333 181-540 16-433 (606)
13 1o6v_A Internalin A; bacterial 99.9 3.3E-20 1.1E-24 194.4 22.8 289 197-542 44-341 (466)
14 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.5E-20 2.2E-24 196.9 25.2 122 180-314 34-159 (562)
15 1ziw_A TOLL-like receptor 3; i 99.8 5.2E-20 1.8E-24 202.4 23.5 247 180-458 7-284 (680)
16 3vq2_A TLR4, TOLL-like recepto 99.8 9.7E-20 3.3E-24 197.5 25.1 129 182-314 16-166 (606)
17 2id5_A Lingo-1, leucine rich r 99.8 5.7E-20 1.9E-24 193.3 22.2 291 201-542 13-306 (477)
18 3rgz_A Protein brassinosteroid 99.8 1.7E-20 5.9E-25 208.6 18.8 297 195-536 196-542 (768)
19 3bz5_A Internalin-J, INLJ; leu 99.8 5E-20 1.7E-24 191.8 21.0 250 189-500 54-303 (457)
20 2ft3_A Biglycan; proteoglycan, 99.8 3.8E-20 1.3E-24 185.0 19.3 104 199-313 54-159 (332)
21 4ecn_A Leucine-rich repeat pro 99.8 3.8E-20 1.3E-24 205.2 20.7 327 195-547 444-842 (876)
22 1xku_A Decorin; proteoglycan, 99.8 2.2E-19 7.5E-24 179.3 23.8 235 183-457 37-274 (330)
23 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-19 3.9E-24 193.1 23.0 122 181-315 4-129 (520)
24 3vq2_A TLR4, TOLL-like recepto 99.8 3.3E-20 1.1E-24 201.2 19.1 194 334-539 345-552 (606)
25 3t6q_A CD180 antigen; protein- 99.8 1.1E-19 3.9E-24 196.9 23.3 118 195-315 125-315 (606)
26 2z81_A CD282 antigen, TOLL-lik 99.8 8.9E-20 3E-24 195.4 21.0 146 182-350 10-159 (549)
27 4fcg_A Uncharacterized protein 99.8 4.8E-20 1.6E-24 183.7 17.2 217 199-491 81-309 (328)
28 4eco_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 201.3 17.6 323 195-548 202-603 (636)
29 3bz5_A Internalin-J, INLJ; leu 99.8 8.8E-20 3E-24 190.0 19.6 258 195-526 38-305 (457)
30 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.8E-24 180.9 19.4 265 199-519 33-306 (332)
31 1xku_A Decorin; proteoglycan, 99.8 4E-19 1.4E-23 177.4 22.5 150 199-374 31-180 (330)
32 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-20 8.9E-25 184.4 12.2 127 199-349 50-184 (313)
33 3v47_A TOLL-like receptor 5B a 99.8 2.8E-19 9.4E-24 186.9 20.1 311 182-524 35-412 (455)
34 3j0a_A TOLL-like receptor 5; m 99.8 7.5E-19 2.5E-23 197.4 24.5 148 180-350 7-159 (844)
35 2z81_A CD282 antigen, TOLL-lik 99.8 1.5E-19 5.1E-24 193.6 17.5 128 182-315 31-162 (549)
36 3rgz_A Protein brassinosteroid 99.8 2.9E-19 9.9E-24 198.7 18.6 207 218-459 315-551 (768)
37 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-18 6E-23 184.0 21.8 124 202-350 3-126 (520)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-18 1.3E-22 183.0 24.2 126 199-349 31-156 (562)
39 2z80_A TOLL-like receptor 2, v 99.8 7.8E-19 2.7E-23 177.0 17.0 269 204-518 36-312 (353)
40 4eco_A Uncharacterized protein 99.8 4.3E-19 1.5E-23 192.8 16.0 286 195-524 269-603 (636)
41 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-18 7.4E-23 187.8 21.3 105 420-539 466-574 (635)
42 2z63_A TOLL-like receptor 4, v 99.8 2.3E-18 7.8E-23 185.3 20.2 320 195-540 48-526 (570)
43 3zyj_A Leucine-rich repeat-con 99.8 2.1E-18 7.3E-23 179.2 19.3 239 182-457 48-290 (440)
44 1ziw_A TOLL-like receptor 3; i 99.8 3.2E-18 1.1E-22 188.1 21.8 126 182-315 30-159 (680)
45 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.3E-23 173.4 19.0 268 181-494 35-312 (353)
46 3zyi_A Leucine-rich repeat-con 99.8 2.2E-18 7.6E-23 179.8 18.9 240 181-457 58-301 (452)
47 4ecn_A Leucine-rich repeat pro 99.8 1.3E-18 4.4E-23 193.0 18.0 295 195-524 511-843 (876)
48 3zyi_A Leucine-rich repeat-con 99.8 3.8E-18 1.3E-22 177.9 20.6 244 200-494 55-301 (452)
49 3zyj_A Leucine-rich repeat-con 99.8 5.1E-18 1.8E-22 176.3 20.9 244 200-494 44-290 (440)
50 2z66_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 170.0 15.8 102 204-313 12-113 (306)
51 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-17 5E-22 186.9 23.0 300 202-543 7-373 (844)
52 2z66_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 167.1 16.8 144 181-349 11-160 (306)
53 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-17 4.9E-22 178.6 20.5 252 181-518 44-295 (622)
54 3g06_A SSPH2 (leucine-rich rep 99.7 6.9E-17 2.3E-21 173.3 22.2 252 200-540 41-292 (622)
55 1ozn_A Reticulon 4 receptor; N 99.7 3.2E-17 1.1E-21 160.0 16.9 223 202-459 14-238 (285)
56 1ogq_A PGIP-2, polygalacturona 99.7 9.5E-18 3.2E-22 165.9 13.2 229 194-498 71-306 (313)
57 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.5E-22 164.7 13.1 246 218-524 31-279 (317)
58 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.7E-21 156.2 18.5 221 182-437 16-239 (285)
59 1jl5_A Outer protein YOPM; leu 99.7 2.9E-16 9.9E-21 163.3 22.7 188 183-403 97-289 (454)
60 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-18 1.5E-22 168.7 7.8 265 198-521 33-300 (317)
61 1jl5_A Outer protein YOPM; leu 99.7 2.3E-16 7.8E-21 164.0 21.0 263 185-529 139-420 (454)
62 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 154.2 16.9 198 200-457 17-216 (270)
63 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.6E-21 157.2 16.4 193 195-458 37-229 (308)
64 4g8a_A TOLL-like receptor 4; l 99.7 6.5E-16 2.2E-20 168.1 21.8 148 182-351 36-185 (635)
65 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.6E-21 150.6 13.8 98 208-315 20-119 (239)
66 2z62_A TOLL-like receptor 4, v 99.7 4.3E-16 1.5E-20 151.2 16.8 216 183-458 13-236 (276)
67 3rfs_A Internalin B, repeat mo 99.7 1.8E-16 6E-21 153.5 13.0 111 195-315 37-147 (272)
68 4ay9_X Follicle-stimulating ho 99.7 8.8E-16 3E-20 154.3 18.3 239 202-515 12-254 (350)
69 2o6q_A Variable lymphocyte rec 99.7 8.9E-16 3E-20 148.4 17.2 195 181-434 20-216 (270)
70 1wwl_A Monocyte differentiatio 99.7 3.5E-17 1.2E-21 161.9 6.2 85 220-313 94-185 (312)
71 2xwt_C Thyrotropin receptor; s 99.7 3.5E-16 1.2E-20 148.3 12.9 205 189-458 23-238 (239)
72 3oja_A Leucine-rich immune mol 99.7 7.3E-16 2.5E-20 161.8 15.7 237 218-515 31-270 (487)
73 1p9a_G Platelet glycoprotein I 99.7 1.1E-15 3.8E-20 149.2 15.6 199 197-458 8-207 (290)
74 2z62_A TOLL-like receptor 4, v 99.6 1.4E-15 4.7E-20 147.6 15.3 121 204-347 12-132 (276)
75 3rfs_A Internalin B, repeat mo 99.6 8.4E-16 2.9E-20 148.7 12.7 144 182-347 46-189 (272)
76 2a5y_B CED-4; apoptosis; HET: 99.6 1E-16 3.5E-21 170.6 6.6 146 7-175 288-472 (549)
77 3oja_A Leucine-rich immune mol 99.6 1.2E-15 4.2E-20 160.1 14.0 239 198-496 33-275 (487)
78 4ay9_X Follicle-stimulating ho 99.6 2.6E-15 8.7E-20 150.9 15.4 239 181-456 13-256 (350)
79 1h6u_A Internalin H; cell adhe 99.6 1.7E-14 5.7E-19 142.2 16.9 183 182-402 46-228 (308)
80 1p9a_G Platelet glycoprotein I 99.6 1.1E-14 3.8E-19 142.1 15.3 198 217-493 6-205 (290)
81 2ast_B S-phase kinase-associat 99.6 6.2E-16 2.1E-20 154.5 5.7 246 201-522 49-307 (336)
82 1wwl_A Monocyte differentiatio 99.6 2.2E-16 7.6E-21 156.1 1.4 106 388-517 198-306 (312)
83 3m19_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 137.0 15.0 107 200-315 15-121 (251)
84 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.6E-19 141.6 13.0 169 218-457 43-211 (291)
85 1h6t_A Internalin B; cell adhe 99.6 1.7E-14 5.8E-19 140.9 13.4 171 194-402 41-211 (291)
86 3m19_A Variable lymphocyte rec 99.6 4.3E-14 1.5E-18 134.9 14.9 145 181-348 18-164 (251)
87 4glp_A Monocyte differentiatio 99.6 3.3E-15 1.1E-19 147.5 7.3 110 200-314 65-182 (310)
88 2ast_B S-phase kinase-associat 99.5 4.8E-15 1.7E-19 148.0 7.6 202 199-456 70-282 (336)
89 2ca6_A RAN GTPase-activating p 99.5 1.5E-15 5.2E-20 154.8 3.8 92 219-313 30-134 (386)
90 1m9s_A Internalin B; cell inva 99.5 1E-14 3.5E-19 156.3 9.3 103 197-313 41-143 (605)
91 1z7x_W Ribonuclease inhibitor; 99.5 2.4E-15 8.1E-20 157.2 2.6 291 200-521 86-411 (461)
92 1m9s_A Internalin B; cell inva 99.5 6.9E-14 2.3E-18 149.9 13.4 149 216-402 38-186 (605)
93 3ogk_B Coronatine-insensitive 99.5 9.8E-15 3.3E-19 157.6 6.6 103 422-538 435-544 (592)
94 2o6s_A Variable lymphocyte rec 99.5 8.6E-14 2.9E-18 128.7 12.0 103 203-314 11-113 (208)
95 2v9t_B SLIT homolog 2 protein 99.5 1.9E-13 6.6E-18 127.5 12.7 146 181-349 15-162 (220)
96 3ogk_B Coronatine-insensitive 99.5 1.5E-14 5.2E-19 156.1 4.9 156 200-374 139-302 (592)
97 2ca6_A RAN GTPase-activating p 99.5 2.4E-14 8.4E-19 145.9 5.4 243 197-458 30-315 (386)
98 3e6j_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 124.9 13.3 144 182-349 24-169 (229)
99 2v9t_B SLIT homolog 2 protein 99.4 4.5E-13 1.5E-17 125.0 12.2 124 202-348 14-137 (220)
100 1z7x_W Ribonuclease inhibitor; 99.4 3.5E-15 1.2E-19 155.9 -3.1 297 196-522 25-355 (461)
101 2v70_A SLIT-2, SLIT homolog 2 99.4 5.6E-13 1.9E-17 124.3 12.2 146 181-349 15-163 (220)
102 2o6s_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 122.4 13.0 143 182-347 12-156 (208)
103 4glp_A Monocyte differentiatio 99.4 3.3E-13 1.1E-17 133.0 10.6 203 199-458 91-306 (310)
104 3e6j_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 124.1 12.4 124 200-347 20-143 (229)
105 4ezg_A Putative uncharacterize 99.4 7.9E-13 2.7E-17 121.1 11.7 125 196-347 41-167 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.2E-17 122.0 12.6 124 201-347 13-137 (220)
107 4ezg_A Putative uncharacterize 99.4 1.4E-12 4.9E-17 119.4 12.2 144 181-350 48-192 (197)
108 2xot_A Amphoterin-induced prot 99.4 7.2E-13 2.5E-17 133.5 10.6 107 200-314 40-149 (361)
109 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.8E-17 125.9 11.4 150 193-403 35-184 (263)
110 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.6E-18 130.1 6.9 167 198-435 18-184 (263)
111 3goz_A Leucine-rich repeat-con 99.4 2.2E-13 7.6E-18 137.4 6.1 242 221-493 22-294 (362)
112 2p1m_B Transport inhibitor res 99.4 2.1E-13 7.2E-18 147.2 5.3 101 421-539 430-538 (594)
113 2p1m_B Transport inhibitor res 99.4 1.9E-13 6.4E-18 147.6 4.6 107 199-311 105-221 (594)
114 3goz_A Leucine-rich repeat-con 99.4 2.8E-13 9.6E-18 136.7 4.4 263 226-518 3-295 (362)
115 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.5E-17 117.3 7.2 134 195-350 15-151 (176)
116 2xot_A Amphoterin-induced prot 99.3 6.9E-12 2.4E-16 126.3 12.2 176 202-402 21-200 (361)
117 2ell_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 113.0 9.0 131 199-350 24-158 (168)
118 2wfh_A SLIT homolog 2 protein 99.3 9.7E-12 3.3E-16 113.3 11.4 124 202-349 13-136 (193)
119 3cvr_A Invasion plasmid antige 99.3 2.4E-11 8.1E-16 128.8 15.4 185 200-461 60-245 (571)
120 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.9E-16 112.1 11.3 126 180-314 13-139 (193)
121 2o6r_A Variable lymphocyte rec 99.3 2.1E-11 7.2E-16 109.4 12.3 108 199-314 28-137 (177)
122 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 110.1 11.0 127 201-350 9-135 (177)
123 2je0_A Acidic leucine-rich nuc 99.3 5.3E-12 1.8E-16 109.9 7.1 126 199-346 17-147 (149)
124 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 128.0 13.8 176 221-494 59-241 (571)
125 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-11 5.7E-16 110.0 9.9 128 181-315 23-154 (176)
126 1w8a_A SLIT protein; signaling 99.2 2.6E-11 9E-16 110.3 11.0 106 200-313 30-138 (192)
127 2ell_A Acidic leucine-rich nuc 99.2 6.2E-11 2.1E-15 105.3 12.2 128 181-315 28-161 (168)
128 1w8a_A SLIT protein; signaling 99.2 2.5E-11 8.6E-16 110.5 9.8 125 202-349 11-136 (192)
129 2r9u_A Variable lymphocyte rec 99.2 4.2E-11 1.4E-15 107.0 10.3 106 201-315 14-119 (174)
130 3g39_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 106.4 10.1 107 200-315 10-116 (170)
131 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 128.6 10.3 105 222-353 442-547 (567)
132 2je0_A Acidic leucine-rich nuc 99.2 1.1E-10 3.7E-15 101.5 9.9 120 182-309 22-148 (149)
133 1vt4_I APAF-1 related killer D 99.0 5.1E-11 1.7E-15 130.2 2.9 130 14-168 300-437 (1221)
134 1dce_A Protein (RAB geranylger 99.0 3.2E-10 1.1E-14 120.7 9.0 151 218-398 406-567 (567)
135 4b8c_D Glucose-repressible alc 99.0 2.7E-10 9.1E-15 125.1 8.3 109 196-315 221-330 (727)
136 4b8c_D Glucose-repressible alc 99.0 2E-10 6.9E-15 126.0 7.1 109 217-351 220-328 (727)
137 3sfz_A APAF-1, apoptotic pepti 99.0 6.3E-11 2.1E-15 139.0 3.1 137 13-174 287-452 (1249)
138 1ds9_A Outer arm dynein; leuci 99.0 2E-11 6.8E-16 111.8 -1.6 104 199-313 48-152 (198)
139 3sb4_A Hypothetical leucine ri 99.0 2.3E-09 8E-14 106.3 12.1 102 197-313 23-136 (329)
140 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 97.0 8.0 103 222-349 10-112 (170)
141 2r9u_A Variable lymphocyte rec 98.9 5.8E-09 2E-13 93.0 10.9 107 180-295 15-123 (174)
142 1ds9_A Outer arm dynein; leuci 98.9 9E-11 3.1E-15 107.4 -1.3 124 200-349 24-150 (198)
143 2ifg_A High affinity nerve gro 98.9 2.9E-09 1E-13 106.4 9.5 104 203-315 12-117 (347)
144 3sb4_A Hypothetical leucine ri 98.9 6.7E-09 2.3E-13 103.0 10.7 43 220-264 100-142 (329)
145 4fdw_A Leucine rich hypothetic 98.8 2.2E-07 7.4E-12 94.4 19.0 119 200-347 114-234 (401)
146 4fdw_A Leucine rich hypothetic 98.7 9.8E-07 3.4E-11 89.5 20.1 266 220-547 112-385 (401)
147 1z6t_A APAF-1, apoptotic prote 98.5 3E-08 1E-12 106.6 4.2 134 14-172 288-450 (591)
148 2ifg_A High affinity nerve gro 98.5 2.7E-07 9.4E-12 92.0 10.0 102 182-292 13-118 (347)
149 3un9_A NLR family member X1; l 98.3 1.4E-07 4.8E-12 94.8 2.4 38 221-259 101-139 (372)
150 3un9_A NLR family member X1; l 98.2 2.6E-07 8.8E-12 92.9 1.1 166 220-404 71-252 (372)
151 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.3E-10 73.8 4.8 90 220-315 60-153 (176)
152 2ra8_A Uncharacterized protein 98.0 9.1E-06 3.1E-10 81.0 6.9 172 241-457 135-318 (362)
153 4fs7_A Uncharacterized protein 97.9 0.00019 6.4E-09 72.7 16.3 107 198-310 70-194 (394)
154 3e4g_A ATP synthase subunit S, 97.8 1.6E-05 5.4E-10 69.7 4.5 37 276-313 61-97 (176)
155 3rw6_A Nuclear RNA export fact 97.7 1.1E-05 3.8E-10 76.2 2.6 90 218-315 138-234 (267)
156 4fs7_A Uncharacterized protein 97.7 0.00044 1.5E-08 69.8 14.3 70 233-312 150-219 (394)
157 3rw6_A Nuclear RNA export fact 97.7 5.3E-05 1.8E-09 71.6 6.6 82 218-309 167-259 (267)
158 1io0_A Tropomodulin; LRR prote 97.6 3.9E-05 1.3E-09 68.7 4.4 91 218-314 33-136 (185)
159 1io0_A Tropomodulin; LRR prote 97.6 4.2E-05 1.4E-09 68.5 4.0 111 199-315 36-165 (185)
160 4gt6_A Cell surface protein; l 97.4 0.0068 2.3E-07 61.0 18.6 101 200-311 65-170 (394)
161 4gt6_A Cell surface protein; l 97.4 0.011 3.9E-07 59.4 20.1 86 217-311 59-147 (394)
162 2ra8_A Uncharacterized protein 97.3 0.00047 1.6E-08 68.5 8.9 107 199-313 172-291 (362)
163 3rfe_A Platelet glycoprotein I 95.9 0.01 3.5E-07 49.2 5.7 54 249-313 12-67 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.0091 3.1E-07 49.5 4.9 52 203-255 12-65 (130)
165 4h09_A Hypothetical leucine ri 95.6 0.026 9E-07 56.2 8.1 103 198-311 216-320 (379)
166 4h09_A Hypothetical leucine ri 94.9 0.041 1.4E-06 54.8 7.1 106 217-347 213-318 (379)
167 1pgv_A TMD-1, tropomodulin TMD 84.8 1.2 4E-05 39.5 5.3 85 221-311 41-136 (197)
168 1pgv_A TMD-1, tropomodulin TMD 78.7 0.84 2.9E-05 40.4 2.0 93 241-347 37-134 (197)
169 1lyp_A CAP18; lipopolysacchari 44.7 38 0.0013 18.6 4.5 23 35-57 6-29 (32)
170 2lz0_A Uncharacterized protein 41.4 26 0.00088 26.8 3.9 38 272-311 16-53 (100)
171 1uhw_A Pleckstrin; three-helix 25.7 46 0.0016 25.9 2.9 43 110-152 32-75 (109)
172 2lz0_A Uncharacterized protein 24.7 45 0.0015 25.4 2.7 35 218-253 17-51 (100)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.7e-23 Score=210.99 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=174.8
Q ss_pred ccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 197 EWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
...+++++++.++.+..+|. +..+++|++|++++|.+..++...|+.+++|++|++++| .++.+|... +++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV------FQN 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHH------hcC
Confidence 45788999999998888876 467899999999999888887756889999999999999 888766443 788
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV 354 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~ 354 (566)
+++|++|++++| .++.+|.++++++++|++|++++|.+.. .....++.+++|+.|+++.+.....
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER--------------IEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc--------------cChhhccCCCCCCEEECCCCcCCcc
Confidence 999999999999 7889988756889999999999887754 3445577888888888886543332
Q ss_pred hccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccc-----------cccccCccCCC
Q 008415 355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTE-----------EVKKLFQSGFR 423 (566)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~-----------~~~~~~~~~l~ 423 (566)
. ....++|+.|.+++ .. . ..+...++|+.|++++|.+..++..... .........++
T Consensus 181 ~-----~~~l~~L~~L~l~~-n~----l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~ 248 (390)
T 3o6n_A 181 D-----LSLIPSLFHANVSY-NL----L--STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 248 (390)
T ss_dssp C-----GGGCTTCSEEECCS-SC----C--SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCT
T ss_pred c-----cccccccceeeccc-cc----c--cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCC
Confidence 1 22235666666665 21 1 1122334566666655553332211000 00001112344
Q ss_pred cccEEecccCcCCCCC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCC
Q 008415 424 SLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYP 501 (566)
Q Consensus 424 ~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~ 501 (566)
+|+.|+++++. +..+ + .+..+++|++|++++|.. +.+ +.....+|+|+.|+++++ .++.++.
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~-------------~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 249 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-VAL-------------NLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp TCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCC-CEE-------------ECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred CccEEECCCCc-CCCcChhHccccccCCEEECCCCcC-ccc-------------CcccCCCCCCCEEECCCC-cceecCc
Confidence 45555554432 2222 1 244445555555544422 111 123455677777777765 4555554
Q ss_pred CCCCCCCccEEeecCCCCCCCCCC
Q 008415 502 NPLPFPKLKKIDVCHCPQLKKLPL 525 (566)
Q Consensus 502 ~~~~~p~L~~L~i~~C~~L~~lP~ 525 (566)
....+++|+.|++.+| .++.+|.
T Consensus 313 ~~~~l~~L~~L~L~~N-~i~~~~~ 335 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHN-SIVTLKL 335 (390)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCCC
T ss_pred cccccCcCCEEECCCC-ccceeCc
Confidence 4455677777777775 4666663
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.8e-22 Score=212.50 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=231.8
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+.+.+..+..+|.. -...++.|++.+|.+..++ .+..+++|++|++++|.+..++...|+++++|++|+|++| .+
T Consensus 15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l 92 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RL 92 (477)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cC
Confidence 455566667777652 2368999999999999875 5788999999999999998886555999999999999999 99
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.+|... ++++++|++|++++| .+..++...+..+++|++|++.+|.+.. .....+..+
T Consensus 93 ~~~~~~~------~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l 151 (477)
T 2id5_A 93 KLIPLGV------FTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY--------------ISHRAFSGL 151 (477)
T ss_dssp CSCCTTS------STTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE--------------ECTTSSTTC
T ss_pred CccCccc------ccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce--------------eChhhccCC
Confidence 8888654 789999999999999 7888766559999999999999998765 345678899
Q ss_pred CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeeccccccccc
Q 008415 339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKL 417 (566)
Q Consensus 339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~ 417 (566)
++|+.|+++.+....+.. .....+.+|+.|++.+ +. ........+..+++|+.|++++|. +..++...
T Consensus 152 ~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~-n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------- 220 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRH-LN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC------- 220 (477)
T ss_dssp TTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEES-CC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-------
T ss_pred CCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCC-Cc-CcEeChhhcccCcccceeeCCCCccccccCccc-------
Confidence 999999999765443321 1122347899999997 32 233333357788999999999998 77654321
Q ss_pred CccCCCcccEEecccCcCCCCCch--hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccc
Q 008415 418 FQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTN 495 (566)
Q Consensus 418 ~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~ 495 (566)
....+|++|+++++ .+..++. +..+++|+.|+|+++.. ..+.. ..+..+++|+.|+|.++ .
T Consensus 221 --~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~------------~~~~~l~~L~~L~L~~n-~ 283 (477)
T 2id5_A 221 --LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI-STIEG------------SMLHELLRLQEIQLVGG-Q 283 (477)
T ss_dssp --TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCC-CEECT------------TSCTTCTTCCEEECCSS-C
T ss_pred --ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcC-CccCh------------hhccccccCCEEECCCC-c
Confidence 23459999999997 5667763 88899999999998863 33332 34678899999999986 4
Q ss_pred cccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEE
Q 008415 496 LKSV-YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVI 537 (566)
Q Consensus 496 L~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~ 537 (566)
++.+ +.....+++|+.|++++| +++.+|......++.|+.+
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence 6655 344567899999999996 7998887543323444443
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.6e-22 Score=203.59 Aligned_cols=291 Identities=18% Similarity=0.214 Sum_probs=177.5
Q ss_pred EecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccc
Q 008415 183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262 (566)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp 262 (566)
...+..+..++....+.++++|++.+|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~ 126 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDIS 126 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCG
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCch
Confidence 33344444455555556666666666666666556666666666666666665542 566666666666666 665544
Q ss_pred ccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCc
Q 008415 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLN 342 (566)
Q Consensus 263 ~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 342 (566)
. +.++++|++|++++|..+..++. +..+++|++|++.+|.... ...+..+++|+
T Consensus 127 ~--------~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~----------------~~~~~~l~~L~ 180 (347)
T 4fmz_A 127 P--------LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD----------------VTPIANLTDLY 180 (347)
T ss_dssp G--------GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC----------------CGGGGGCTTCS
T ss_pred h--------hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC----------------chhhccCCCCC
Confidence 3 45666666666666654444444 6666666666666665543 11256667777
Q ss_pred eEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCC
Q 008415 343 VLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGF 422 (566)
Q Consensus 343 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l 422 (566)
.|+++.+....+.. .....+|+.|.+.+ +. .. ....+..+++|+.|++++|.+..++ ....+
T Consensus 181 ~L~l~~n~l~~~~~----~~~l~~L~~L~l~~-n~-l~--~~~~~~~~~~L~~L~l~~n~l~~~~----------~~~~l 242 (347)
T 4fmz_A 181 SLSLNYNQIEDISP----LASLTSLHYFTAYV-NQ-IT--DITPVANMTRLNSLKIGNNKITDLS----------PLANL 242 (347)
T ss_dssp EEECTTSCCCCCGG----GGGCTTCCEEECCS-SC-CC--CCGGGGGCTTCCEEECCSSCCCCCG----------GGTTC
T ss_pred EEEccCCccccccc----ccCCCccceeeccc-CC-CC--CCchhhcCCcCCEEEccCCccCCCc----------chhcC
Confidence 77776554333322 22335677777765 32 11 1223666777888888777743322 13467
Q ss_pred CcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccC-C
Q 008415 423 RSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY-P 501 (566)
Q Consensus 423 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~-~ 501 (566)
++|++|++++| .+..++.+..+++|++|++++|. +..+. .+..+++|+.|++++|. +.... .
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~L~~n~-l~~~~~~ 305 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS--------------VLNNLSQLNSLFLNNNQ-LGNEDME 305 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG--------------GGGGCTTCSEEECCSSC-CCGGGHH
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh--------------hhcCCCCCCEEECcCCc-CCCcChh
Confidence 78888888876 56667777788888888888774 33221 35678888888888875 43322 2
Q ss_pred CCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEech
Q 008415 502 NPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE 540 (566)
Q Consensus 502 ~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~ 540 (566)
....+++|+.|++++|+ ++.+|. +.. ++.|+.++..
T Consensus 306 ~l~~l~~L~~L~L~~n~-l~~~~~-~~~-l~~L~~L~l~ 341 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNH-ITDIRP-LAS-LSKMDSADFA 341 (347)
T ss_dssp HHHTCTTCSEEECCSSS-CCCCGG-GGG-CTTCSEESSS
T ss_pred HhhccccCCEEEccCCc-cccccC-hhh-hhccceeehh
Confidence 23557889999998875 777655 333 3555555443
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-22 Score=216.28 Aligned_cols=278 Identities=19% Similarity=0.194 Sum_probs=157.5
Q ss_pred cccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 198 WEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
..+++.+++.++.+..+|. +..+++|++|++++|.+..++...|+.+++|++|+|++| .++.+|+.. ++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV------FQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH------HcCC
Confidence 3566777777777766664 356677777777777777666544777777777777777 676665433 6777
Q ss_pred ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415 276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ 355 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~ 355 (566)
++|++|++++| .++.+|.++++.+++|++|++++|.+.. ..+..++.+++|+.|+++.+.....+
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER--------------IEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC--------------CChhhhhcCCcCcEEECcCCCCCCcC
Confidence 77777777777 6777776645777777777777776644 23445666777777777654332221
Q ss_pred ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccc-----------cccccCccCCCc
Q 008415 356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTE-----------EVKKLFQSGFRS 424 (566)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~-----------~~~~~~~~~l~~ 424 (566)
....++|+.|.+++ +. + ..+...++|+.|++++|.+..++..... ..+......+++
T Consensus 188 -----~~~l~~L~~L~l~~-n~----l--~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~ 255 (597)
T 3oja_B 188 -----LSLIPSLFHANVSY-NL----L--STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 255 (597)
T ss_dssp -----GGGCTTCSEEECCS-SC----C--SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred -----hhhhhhhhhhhccc-Cc----c--ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCC
Confidence 12224555555554 11 0 1122233445555544442222110000 000011234555
Q ss_pred ccEEecccCcCCCCC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCC
Q 008415 425 LNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN 502 (566)
Q Consensus 425 L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~ 502 (566)
|+.|+|+++. +..+ | .++.+++|+.|+|++|.. ..+ |.....+|+|+.|+|+++ .+..++..
T Consensus 256 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l-------------~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 319 (597)
T 3oja_B 256 LVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-VAL-------------NLYGQPIPTLKVLDLSHN-HLLHVERN 319 (597)
T ss_dssp CSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC-CEE-------------ECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred CCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC-CCC-------------CcccccCCCCcEEECCCC-CCCccCcc
Confidence 6666665543 3222 2 255556666666655432 222 224456777888888775 35566655
Q ss_pred CCCCCCccEEeecCCCCCCCCCCC
Q 008415 503 PLPFPKLKKIDVCHCPQLKKLPLN 526 (566)
Q Consensus 503 ~~~~p~L~~L~i~~C~~L~~lP~~ 526 (566)
...+++|+.|++++| .++.+|..
T Consensus 320 ~~~l~~L~~L~L~~N-~l~~~~~~ 342 (597)
T 3oja_B 320 QPQFDRLENLYLDHN-SIVTLKLS 342 (597)
T ss_dssp HHHHTTCSEEECCSS-CCCCCCCC
T ss_pred cccCCCCCEEECCCC-CCCCcChh
Confidence 556778888888875 46666643
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.8e-22 Score=205.19 Aligned_cols=295 Identities=17% Similarity=0.192 Sum_probs=208.1
Q ss_pred EEEecCCccccCCC--ccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCC
Q 008415 181 FLVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256 (566)
Q Consensus 181 ~~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~ 256 (566)
.+...+..+..+|. ...+.++++|++.++.+..++ .+..+++|++|++++|.+..++...++++++|++|++++|
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 127 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN- 127 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-
Confidence 34445555666665 345689999999999998875 4688999999999999999888777899999999999999
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc-ccccccccc-cCccchHhh
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV-TEEEGNVLC-EDAEPLMKE 334 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 334 (566)
.++.+|..+ ++++++|++|++++| .++.++...++.+++|++|++++|.+... ......... .-....+..
T Consensus 128 ~l~~l~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 128 DLSSLPRGI------FHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCCCCCTTT------TTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred ccCcCCHHH------hcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 998888665 689999999999999 78888766699999999999999987641 000000000 000001111
Q ss_pred hcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccc
Q 008415 335 LLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEV 414 (566)
Q Consensus 335 l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~ 414 (566)
+....+|+.|+++.+....++. ....+|+.|++++ +. .. ....+..+++|+.|++++|.+..+...
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~-n~-l~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~----- 266 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQH-NN-LT--DTAWLLNYPGLVEVDLSYNELEKIMYH----- 266 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCS-SC-CC--CCGGGGGCTTCSEEECCSSCCCEEESG-----
T ss_pred cCCCCcceEEECCCCeeeeccc-----cccccccEEECCC-CC-Cc--ccHHHcCCCCccEEECCCCcCCCcChh-----
Confidence 1222334444444332222111 1125788888886 32 12 224577889999999999985544322
Q ss_pred cccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415 415 KKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493 (566)
Q Consensus 415 ~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~ 493 (566)
....+++|++|+++++ .+..++. ...+++|++|++++|. +..++ ..+..+++|+.|++.++
T Consensus 267 ---~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 267 ---PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVE-------------RNQPQFDRLENLYLDHN 328 (390)
T ss_dssp ---GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCG-------------GGHHHHTTCSEEECCSS
T ss_pred ---HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecC-------------ccccccCcCCEEECCCC
Confidence 1246899999999996 5666655 6679999999999985 33333 35678999999999987
Q ss_pred ccccccCCCCCCCCCccEEeecCCC
Q 008415 494 TNLKSVYPNPLPFPKLKKIDVCHCP 518 (566)
Q Consensus 494 ~~L~~l~~~~~~~p~L~~L~i~~C~ 518 (566)
+ ++.++ ...+++|+.|++.+++
T Consensus 329 ~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 S-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSSC
T ss_pred c-cceeC--chhhccCCEEEcCCCC
Confidence 5 66665 5678999999999864
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.4e-22 Score=201.19 Aligned_cols=284 Identities=19% Similarity=0.182 Sum_probs=222.8
Q ss_pred CccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 194 KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 194 ~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
....+++++++++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .++.+|. ++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~~--------~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDISA--------LQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--------GT
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCchH--------Hc
Confidence 345668999999999999999989999999999999999998887 899999999999999 8887652 68
Q ss_pred ccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccc
Q 008415 274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG 353 (566)
Q Consensus 274 ~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~ 353 (566)
++++|++|++++| .+..+|. +..+++|++|++.+|.... .+..+..+++|+.|+++.+....
T Consensus 108 ~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~---------------~~~~~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 108 NLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLS---------------DLSPLSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp TCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCC---------------CCGGGTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcc---------------cccchhhCCCCcEEEecCCCcCC
Confidence 9999999999999 8999988 9999999999999997654 34458899999999999765444
Q ss_pred hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccC
Q 008415 354 VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC 433 (566)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 433 (566)
... ...+++|+.|++++ +. .. ....+..+++|+.|++.+|.+..++ ....+++|++|++++|
T Consensus 170 ~~~----~~~l~~L~~L~l~~-n~-l~--~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 170 VTP----IANLTDLYSLSLNY-NQ-IE--DISPLASLTSLHYFTAYVNQITDIT----------PVANMTRLNSLKIGNN 231 (347)
T ss_dssp CGG----GGGCTTCSEEECTT-SC-CC--CCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECCSS
T ss_pred chh----hccCCCCCEEEccC-Cc-cc--ccccccCCCccceeecccCCCCCCc----------hhhcCCcCCEEEccCC
Confidence 433 33457899999997 43 12 2334778899999999998844321 1357899999999997
Q ss_pred cCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEe
Q 008415 434 RKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKID 513 (566)
Q Consensus 434 ~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~ 513 (566)
.+..++.+..+++|++|++++|.. ..+. .+..+++|+.|+++++ .++.++ ....+++|+.|+
T Consensus 232 -~l~~~~~~~~l~~L~~L~l~~n~l-~~~~--------------~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~ 293 (347)
T 4fmz_A 232 -KITDLSPLANLSQLTWLEIGTNQI-SDIN--------------AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLF 293 (347)
T ss_dssp -CCCCCGGGTTCTTCCEEECCSSCC-CCCG--------------GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEE
T ss_pred -ccCCCcchhcCCCCCEEECCCCcc-CCCh--------------hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEE
Confidence 577777799999999999999843 3332 3668899999999987 466664 345689999999
Q ss_pred ecCCCCCCCCC-CCCccccCCcEEEechhhhh
Q 008415 514 VCHCPQLKKLP-LNSSSAKERRVVIEGEKKWW 544 (566)
Q Consensus 514 i~~C~~L~~lP-~~~~~~l~~L~i~~~~~~~~ 544 (566)
+++| .++..+ ..+.. ++.|+.++.....+
T Consensus 294 L~~n-~l~~~~~~~l~~-l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 294 LNNN-QLGNEDMEVIGG-LTNLTTLFLSQNHI 323 (347)
T ss_dssp CCSS-CCCGGGHHHHHT-CTTCSEEECCSSSC
T ss_pred CcCC-cCCCcChhHhhc-cccCCEEEccCCcc
Confidence 9998 465543 33333 35666665554433
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.5e-22 Score=197.70 Aligned_cols=241 Identities=20% Similarity=0.244 Sum_probs=177.1
Q ss_pred CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhc
Q 008415 219 TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS 298 (566)
Q Consensus 219 ~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~ 298 (566)
...+++.|+++++.+..+|.. ++++++|++|+|++| .++.+|.. ++++++|++|++++| .++.+|.. ++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~-------~~~l~~L~~L~Ls~n-~l~~lp~~-l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDT-------MQQFAGLETLTLARN-PLRALPAS-IA 147 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSC-------GGGGTTCSEEEEESC-CCCCCCGG-GG
T ss_pred cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHH-------HhccCCCCEEECCCC-ccccCcHH-Hh
Confidence 346788888888888888887 677888999999888 77665544 588888999999888 78888887 88
Q ss_pred CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCC
Q 008415 299 GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT 378 (566)
Q Consensus 299 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 378 (566)
++++|++|++++|.... ..+..+. ...+.+
T Consensus 148 ~l~~L~~L~L~~n~~~~--------------~~p~~~~--------------------------------~~~~~~---- 177 (328)
T 4fcg_A 148 SLNRLRELSIRACPELT--------------ELPEPLA--------------------------------STDASG---- 177 (328)
T ss_dssp GCTTCCEEEEEEETTCC--------------CCCSCSE--------------------------------EEC-CC----
T ss_pred cCcCCCEEECCCCCCcc--------------ccChhHh--------------------------------hccchh----
Confidence 88888888888876543 1111111 001111
Q ss_pred CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCc-hhhccCCcceEeEeccc
Q 008415 379 SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT-WLVFVQNLKVLRIGDCY 457 (566)
Q Consensus 379 ~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~ 457 (566)
.+..+++|+.|++++|.+..++. ....+++|++|+|+++. +..+| .++.+++|++|++++|.
T Consensus 178 -------~~~~l~~L~~L~L~~n~l~~lp~---------~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 178 -------EHQGLVNLQSLRLEWTGIRSLPA---------SIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp -------CEEESTTCCEEEEEEECCCCCCG---------GGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCT
T ss_pred -------hhccCCCCCEEECcCCCcCcchH---------hhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCc
Confidence 24456778888888777444431 12467788888888864 44554 48888999999998887
Q ss_pred CcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEE
Q 008415 458 DMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVI 537 (566)
Q Consensus 458 ~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~ 537 (566)
....++ ..+..+++|+.|+|.+|..+..++.....+++|+.|++++|+.+..+|..+..+ +.|+++
T Consensus 241 ~~~~~p-------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l 306 (328)
T 4fcg_A 241 ALRNYP-------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCII 306 (328)
T ss_dssp TCCBCC-------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEE
T ss_pred chhhhH-------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEE
Confidence 766543 367788999999999998888888878889999999999999999999888776 889999
Q ss_pred echhhhhhcccccc
Q 008415 538 EGEKKWWEELQWED 551 (566)
Q Consensus 538 ~~~~~~~~~l~~~~ 551 (566)
.++......+.+..
T Consensus 307 ~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 307 LVPPHLQAQLDQHR 320 (328)
T ss_dssp ECCGGGSCC-----
T ss_pred eCCHHHHHHHhhhh
Confidence 99888777766553
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=3.6e-21 Score=201.21 Aligned_cols=313 Identities=17% Similarity=0.178 Sum_probs=202.4
Q ss_pred ceEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCC
Q 008415 179 QNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRIN 255 (566)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~ 255 (566)
...+.+.+.++..+|. -..++++|++++|.+..++ .+..+++|++|++++|.+. .++...|+++++|++|+|++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3445666667777776 3378999999999998863 4688999999999999775 666656899999999999999
Q ss_pred CCCccccccccccCcchhccccCcEecccCcccCCc-cc-hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHh
Q 008415 256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-IP-HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMK 333 (566)
Q Consensus 256 ~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-lP-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (566)
.+..++ |..++++++|++|++++| .++. +| ...++.+++|++|++++|.+.. ..+.
T Consensus 90 -~l~~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~ 147 (455)
T 3v47_A 90 -QFLQLE------TGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--------------IQPA 147 (455)
T ss_dssp -TTCEEC------TTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCS--------------CCCC
T ss_pred -ccCccC------hhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCc--------------cCcc
Confidence 887553 344788899999999998 6765 22 2337888999999999887754 1222
Q ss_pred h-hcCCCCCceEEEEEcCccchh--ccccC------------------------------CcccccceEEEEecccCCCC
Q 008415 334 E-LLGSKHLNVLSWTFRSSLGVQ--NFLKY------------------------------PKLVSITQSVLVKSGVHTSP 380 (566)
Q Consensus 334 ~-l~~L~~L~~L~i~~~~~~~~~--~~~~~------------------------------~~~~~~L~~L~l~~~~~~~~ 380 (566)
. ++++++|+.|+++.+...... .+... .....+|+.|++++ +.-..
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~ 226 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKE 226 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCH
T ss_pred cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC-Ccccc
Confidence 2 667778888877754322110 00000 00113455555554 21000
Q ss_pred -------------Ceee-----------------------eccc--cccCcceEEEeccccceeeecccccccccCccCC
Q 008415 381 -------------PFNV-----------------------LHLA--YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGF 422 (566)
Q Consensus 381 -------------~~~~-----------------------~~l~--~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l 422 (566)
.... ..+. ..++|+.|++++|.+..+.. .....+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l 298 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK--------SVFSHF 298 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT--------TTTTTC
T ss_pred cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch--------hhcccC
Confidence 0000 0000 11456666666655322211 112456
Q ss_pred CcccEEecccCcCCCCC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccccc-
Q 008415 423 RSLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV- 499 (566)
Q Consensus 423 ~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l- 499 (566)
++|+.|+++++. +..+ + .++.+++|++|++++|.. ..+. +..+..+++|+.|+|+++. ++.+
T Consensus 299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~------------~~~~~~l~~L~~L~Ls~N~-l~~~~ 363 (455)
T 3v47_A 299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFL-GSID------------SRMFENLDKLEVLDLSYNH-IRALG 363 (455)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC-CEEC------------GGGGTTCTTCCEEECCSSC-CCEEC
T ss_pred CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCcc-CCcC------------hhHhcCcccCCEEECCCCc-ccccC
Confidence 788888888764 4433 3 377788888888888754 3332 1356788999999999874 6665
Q ss_pred CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEech
Q 008415 500 YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE 540 (566)
Q Consensus 500 ~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~ 540 (566)
+.....+++|++|++.+| +++.+|......++.|+.++..
T Consensus 364 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEcc
Confidence 455677899999999995 7999887654334566555443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7e-22 Score=213.53 Aligned_cols=295 Identities=17% Similarity=0.191 Sum_probs=209.3
Q ss_pred EEEecCCccccCCC--ccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCC
Q 008415 181 FLVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256 (566)
Q Consensus 181 ~~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~ 256 (566)
.+...+..+..+|. ...+.+++.|++.+|.+..++ .+..+++|++|++++|.+..+|+..|+++++|++|+|++|
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 133 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN- 133 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-
Confidence 34444545555554 345679999999999998876 5789999999999999999998887899999999999999
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc-ccccccccc-cCccchHhh
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV-TEEEGNVLC-EDAEPLMKE 334 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 334 (566)
.++.+|..+ ++++++|++|++++| .++.+|+..++.+++|++|++++|.+... ......... .-....+..
T Consensus 134 ~l~~l~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 134 DLSSLPRGI------FHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCCCCCTTT------TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCCCCCHHH------hccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 998888765 789999999999999 78888775599999999999999987641 000000000 000001111
Q ss_pred hcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccc
Q 008415 335 LLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEV 414 (566)
Q Consensus 335 l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~ 414 (566)
+....+|+.|+++.+....+.. ....+|+.|.+++ +. .. ....+..+++|+.|++++|.+..++..
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~-n~-l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~----- 272 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQH-NN-LT--DTAWLLNYPGLVEVDLSYNELEKIMYH----- 272 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCS-SC-CC--CCGGGGGCTTCSEEECCSSCCCEEESG-----
T ss_pred ccCCchhheeeccCCccccccc-----ccCCCCCEEECCC-CC-CC--CChhhccCCCCCEEECCCCccCCCCHH-----
Confidence 2223344444444332222111 1124688888886 42 11 234578889999999999985544322
Q ss_pred cccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415 415 KKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493 (566)
Q Consensus 415 ~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~ 493 (566)
....+++|+.|+|+++ .+..+|. .+.+|+|+.|+|++|... .++ ..+..+++|+.|+|+++
T Consensus 273 ---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~-------------~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 273 ---PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE-------------RNQPQFDRLENLYLDHN 334 (597)
T ss_dssp ---GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCG-------------GGHHHHTTCSEEECCSS
T ss_pred ---HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccC-------------cccccCCCCCEEECCCC
Confidence 2246899999999996 5666655 667999999999998643 333 35678999999999997
Q ss_pred ccccccCCCCCCCCCccEEeecCCC
Q 008415 494 TNLKSVYPNPLPFPKLKKIDVCHCP 518 (566)
Q Consensus 494 ~~L~~l~~~~~~~p~L~~L~i~~C~ 518 (566)
. +..++ ...+++|+.|++.+++
T Consensus 335 ~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 S-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSSC
T ss_pred C-CCCcC--hhhcCCCCEEEeeCCC
Confidence 5 66654 5678999999999875
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=3.3e-20 Score=199.63 Aligned_cols=129 Identities=26% Similarity=0.326 Sum_probs=75.0
Q ss_pred EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+.+.+.++..+|.. -...+++|++++|.+..++ .+..+++|++|++++|.+..++...|+++++|++|+|++| .++
T Consensus 12 ~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~ 89 (570)
T 2z63_A 12 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 89 (570)
T ss_dssp EECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCC
Confidence 34444444444431 1245666666666655543 3455566666666666555555444555566666666655 555
Q ss_pred ccccc-c----------------cccCc-chhccccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCCCCc
Q 008415 260 KLPSG-I----------------RGLPQ-ELKALEKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 260 ~lp~~-i----------------~~LP~-~i~~L~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
.+|.. + ..+|. .++++++|++|++++| .++. +|.. ++++++|++|++++|.+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence 44421 1 12222 3677888888888887 5664 5666 788888888888877653
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.7e-20 Score=193.98 Aligned_cols=283 Identities=15% Similarity=0.180 Sum_probs=132.3
Q ss_pred cCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc
Q 008415 185 AGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264 (566)
Q Consensus 185 ~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~ 264 (566)
.+..+..++....+.++++|++++|.+..++.+..+++|++|++++|.+..++. ++++++|++|++++| .++.+|.
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~- 129 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP- 129 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-
Confidence 333444455555566677777776666666556666666666666666665554 566666666666666 6655543
Q ss_pred ccccCcchhccccCcEecccCcccCCccch--------------------hhhcCCCCCcEEEecCCCCcccc-----cc
Q 008415 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPH--------------------QLISGFSKLEVLRLFGCGFWVVT-----EE 319 (566)
Q Consensus 265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~--------------------~~i~~L~~L~~L~l~~~~~~~~~-----~~ 319 (566)
++++++|++|++++| .+..+|. . ++++++|++|++++|...... ..
T Consensus 130 -------~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 200 (466)
T 1o6v_A 130 -------LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTN 200 (466)
T ss_dssp -------GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred -------HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCC
Confidence 233333333333333 2222221 1 445555556666555443200 00
Q ss_pred cc--cccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEE
Q 008415 320 EG--NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFE 397 (566)
Q Consensus 320 ~~--~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 397 (566)
+. ++... .......++.+++|+.|+++.+....++. ...+++|+.|++++ +.- . ....+..+++|+.|+
T Consensus 201 L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~-n~l-~--~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 201 LESLIATNN-QISDITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLAN-NQI-S--NLAPLSGLTKLTELK 271 (466)
T ss_dssp CSEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCS-SCC-C--CCGGGTTCTTCSEEE
T ss_pred CCEEEecCC-cccccccccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCC-Ccc-c--cchhhhcCCCCCEEE
Confidence 00 00000 00000113344444444444332222211 11224455555554 211 1 111244455555555
Q ss_pred EeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCC
Q 008415 398 LESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGS 477 (566)
Q Consensus 398 l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~ 477 (566)
+++|.+..++ ....+++|+.|++++| .+..++.++.+++|+.|++++|... .+.
T Consensus 272 l~~n~l~~~~----------~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~~-------------- 325 (466)
T 1o6v_A 272 LGANQISNIS----------PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNIS-DIS-------------- 325 (466)
T ss_dssp CCSSCCCCCG----------GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCS-CCG--------------
T ss_pred CCCCccCccc----------cccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCC-Cch--------------
Confidence 5555522211 1234566666666664 3555555666666666666665322 111
Q ss_pred CCccccccceeeccccccccccCCCCCCCCCccEEeecCC
Q 008415 478 EHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHC 517 (566)
Q Consensus 478 ~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C 517 (566)
.+..+++|+.|++.++ .++.++ ....+++|+.|++.+|
T Consensus 326 ~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC
Confidence 1345556666666554 243332 2334556666666554
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.6e-20 Score=202.06 Aligned_cols=333 Identities=16% Similarity=0.064 Sum_probs=182.5
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+.+.+.++..+|..- ...+++|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .+
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PL 93 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred eEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cc
Confidence 4555566666666422 257899999999888874 4678889999999998888775555888999999999988 87
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc-cc------ccc--cccccC-c
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV-TE------EEG--NVLCED-A 328 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~-~~------~~~--~~~~~~-~ 328 (566)
..+++ ..++++++|++|++++| .++.++...++++++|++|++++|.+... .. .+. ++.... .
T Consensus 94 ~~~~~------~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 94 IFMAE------TALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp SEECT------TTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cccCh------hhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 75533 33677777777777777 67776433377777777777777765431 00 000 000000 1
Q ss_pred cchHhhhcCCCCCc--eEEEEEcCccchhccccCCcccc-----------------------------------------
Q 008415 329 EPLMKELLGSKHLN--VLSWTFRSSLGVQNFLKYPKLVS----------------------------------------- 365 (566)
Q Consensus 329 ~~~~~~l~~L~~L~--~L~i~~~~~~~~~~~~~~~~~~~----------------------------------------- 365 (566)
...+..++.+++|+ .|++..+...... .......
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIE---PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEEC---TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred ccChhhhhhhcccceeEEecCCCccCccC---hhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 12244566666666 3333322211110 0000001
Q ss_pred -----------cceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415 366 -----------ITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR 434 (566)
Q Consensus 366 -----------~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 434 (566)
.++.|++++ + .........+..+++|+.|++++|.+..+|. ....+++|++|+++++.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~---------~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQK-H-YFFNISSNTFHCFSGLQELDLTATHLSELPS---------GLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTT-C-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCS---------SCCSCTTCCEEECTTCC
T ss_pred ChhHhchhhcCceeEEEeec-C-ccCccCHHHhccccCCCEEeccCCccCCCCh---------hhcccccCCEEECccCC
Confidence 344444443 1 1111212235666777788877777444432 12345666666666653
Q ss_pred CCCCC-c-hhhccCCcceEeEecccCcccccccccccc-------------cc-cccCCCCccccccceeeccccccccc
Q 008415 435 KAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRD-------------IS-VIIGSEHNFFAQLEYLSISWGTNLKS 498 (566)
Q Consensus 435 ~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~-------------~~-~~l~~~~~~f~~L~~L~L~~~~~L~~ 498 (566)
+..+ + .++.+++|++|++++|.....++...+... .. ...+..+..+++|+.|++.++. +..
T Consensus 313 -l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~ 390 (606)
T 3t6q_A 313 -FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLS 390 (606)
T ss_dssp -CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEE
T ss_pred -cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCc
Confidence 3332 2 255666666666666543322221100000 00 0012345667777777777754 333
Q ss_pred c-CCCCCCCCCccEEeecCCCCCCC-CCCC-CccccCCcEEEech
Q 008415 499 V-YPNPLPFPKLKKIDVCHCPQLKK-LPLN-SSSAKERRVVIEGE 540 (566)
Q Consensus 499 l-~~~~~~~p~L~~L~i~~C~~L~~-lP~~-~~~~l~~L~i~~~~ 540 (566)
+ +.....+++|+.|++.+|. ++. .|.. +.. ++.|+.++..
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~ 433 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQN-LHLLKVLNLS 433 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTT-CTTCCEEECT
T ss_pred CCHHHhcCCccCCeEECCCCc-CCCcccchhhhC-cccCCEEECC
Confidence 3 3344567788888888764 443 3433 333 3555555544
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=3.3e-20 Score=194.35 Aligned_cols=289 Identities=16% Similarity=0.184 Sum_probs=186.9
Q ss_pred ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.+.+++.+++.++.+..++.+..+++|++|++++|.+..++. ++++++|++|++++| .+..+|. +++++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--------~~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--------LANLT 112 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--------GTTCT
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--------hcCCC
Confidence 357899999999999999988999999999999999998886 899999999999999 8877654 68999
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN 356 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~ 356 (566)
+|++|++++| .++.+|. ++++++|++|++++|.+.. +..++.+++|+.|++... ......
T Consensus 113 ~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------~~~~~~l~~L~~L~l~~~-~~~~~~ 172 (466)
T 1o6v_A 113 NLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISD----------------ISALSGLTSLQQLSFGNQ-VTDLKP 172 (466)
T ss_dssp TCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEEEECC----------------CGGGTTCTTCSEEEEEES-CCCCGG
T ss_pred CCCEEECCCC-CCCCChH--HcCCCCCCEEECCCCccCC----------------ChhhccCCcccEeecCCc-ccCchh
Confidence 9999999999 8999987 9999999999999987653 234677777777777532 111111
Q ss_pred cccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCC
Q 008415 357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKA 436 (566)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 436 (566)
...+++|+.|++++ +. .. ....+..+++|+.|++++|.+..++ +...+++|+.|++++| .+
T Consensus 173 ----~~~l~~L~~L~l~~-n~-l~--~~~~l~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n-~l 233 (466)
T 1o6v_A 173 ----LANLTTLERLDISS-NK-VS--DISVLAKLTNLESLIATNNQISDIT----------PLGILTNLDELSLNGN-QL 233 (466)
T ss_dssp ----GTTCTTCCEEECCS-SC-CC--CCGGGGGCTTCSEEECCSSCCCCCG----------GGGGCTTCCEEECCSS-CC
T ss_pred ----hccCCCCCEEECcC-Cc-CC--CChhhccCCCCCEEEecCCcccccc----------cccccCCCCEEECCCC-Cc
Confidence 22335677777765 32 11 1233556667777777666632211 1123455555555553 34
Q ss_pred CCCchhhccCCcceEeEecccCccccccccccccc------c---cccCCCCccccccceeeccccccccccCCCCCCCC
Q 008415 437 KDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDI------S---VIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFP 507 (566)
Q Consensus 437 ~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~------~---~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p 507 (566)
..++.+..+++|+.|++++|.... +......... . ..++ .+..+++|+.|++.++. ++.++. ...++
T Consensus 234 ~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~ 309 (466)
T 1o6v_A 234 KDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ-LEDISP-ISNLK 309 (466)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CSCCGG-GGGCT
T ss_pred ccchhhhcCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCCc-ccCchh-hcCCC
Confidence 444444455555555555443211 1100000000 0 0011 24567788888887753 555443 45678
Q ss_pred CccEEeecCCCCCCCCCCCCccccCCcEEEechhh
Q 008415 508 KLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKK 542 (566)
Q Consensus 508 ~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~~~ 542 (566)
+|+.|++++| +++.++. +.. ++.|+.++....
T Consensus 310 ~L~~L~L~~n-~l~~~~~-~~~-l~~L~~L~l~~n 341 (466)
T 1o6v_A 310 NLTYLTLYFN-NISDISP-VSS-LTKLQRLFFYNN 341 (466)
T ss_dssp TCSEEECCSS-CCSCCGG-GGG-CTTCCEEECCSS
T ss_pred CCCEEECcCC-cCCCchh-hcc-CccCCEeECCCC
Confidence 8888988887 5666554 222 355655555433
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=6.5e-20 Score=196.88 Aligned_cols=122 Identities=26% Similarity=0.344 Sum_probs=99.9
Q ss_pred eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
..+...+..+..+|..- ..++++|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-R 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-c
Confidence 45666677777777532 378999999999999886 5789999999999999999886666899999999999999 8
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccc--hhhhcCCCCCcEEEecCCCCc
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIP--HQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP--~~~i~~L~~L~~L~l~~~~~~ 314 (566)
++.+|. . .+++|++|++++| .++.+| .. ++++++|++|++++|.+.
T Consensus 112 l~~lp~-------~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 112 LQNISC-------C--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCEECS-------C--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCC
T ss_pred CCccCc-------c--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCccc
Confidence 987764 2 6888999999988 787765 44 888899999988887764
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=5.2e-20 Score=202.41 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=165.3
Q ss_pred eEEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
..+.+.+..+..+|..- ..++++|++++|.+..++. +..+++|++|++++|.+..+++..|+++++|++|+|++| .
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence 34566666677777432 3789999999999988764 688999999999999998887767999999999999999 9
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG 337 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (566)
++.+|... ++++++|++|++++| .++.+|...++++++|++|++++|.... ..+..+++
T Consensus 85 l~~l~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~ 143 (680)
T 1ziw_A 85 LSQLSDKT------FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS--------------TKLGTQVQ 143 (680)
T ss_dssp CCCCCTTT------TTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC--------------CCCCSSSC
T ss_pred cCccChhh------hccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc--------------cCchhhcc
Confidence 98877643 799999999999999 7888886559999999999999998765 34455778
Q ss_pred CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccc---------------------------
Q 008415 338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYM--------------------------- 390 (566)
Q Consensus 338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--------------------------- 390 (566)
+++|+.|+++.+................+|+.|++++ +. ........+..+
T Consensus 144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS-NQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT-CC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred cccCCEEEccCCcccccCHHHhhccccccccEEECCC-Cc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence 8889988888654332211100011125677777776 32 111111112222
Q ss_pred cCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC-c-hhhccCCcceEeEecccC
Q 008415 391 ENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYD 458 (566)
Q Consensus 391 ~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~ 458 (566)
++|+.|++++|.+..+... +......++|+.|+++++. +..+ + .++.+++|++|+++++..
T Consensus 222 ~~L~~L~L~~n~l~~~~~~------~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNT------TFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp SCCCEEECTTSCCCEECTT------TTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccccEEEccCCcccccChh------HhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCcc
Confidence 4455555555553222111 1111111347777777753 3332 2 266677777777776643
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=9.7e-20 Score=197.50 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=77.9
Q ss_pred EEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+.+.+.++..+|..- ..++++|++++|.+..++. +..+++|++|++++|.+..+++..|+++++|++|+|++| .++
T Consensus 16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQ 93 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred eEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccc
Confidence 444555555555421 2566667776666666543 456666666666666666654444666666666666666 565
Q ss_pred cc-cccc----------------cccC-cchhccccCcEecccCcccCC--ccchhhhcCCCCCcEEEecCCCCc
Q 008415 260 KL-PSGI----------------RGLP-QELKALEKLRYLNLDYTRFLS--IIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 260 ~l-p~~i----------------~~LP-~~i~~L~~L~~L~L~~~~~l~--~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
.+ |..+ ..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce
Confidence 55 3322 1122 34677777777777777 555 35665 777777777777777654
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=5.7e-20 Score=193.30 Aligned_cols=291 Identities=17% Similarity=0.185 Sum_probs=218.9
Q ss_pred ccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
-+.+...++.+..+|.. -.+++++|++++|.+..++...|.++++|++|+|++| .++.++ |..++++++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~------~~~~~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVE------PGAFNNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEEC------TTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeC------hhhhhCCccCCE
Confidence 35677777888888753 3479999999999999887666999999999999999 888664 344799999999
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccC
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKY 360 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~ 360 (566)
|++++| .++.+|.++++++++|++|++++|.+.. .....+..+++|+.|+++.+...... ...
T Consensus 85 L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~ 147 (477)
T 2id5_A 85 LGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVI--------------LLDYMFQDLYNLKSLEVGDNDLVYIS--HRA 147 (477)
T ss_dssp EECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCE--------------ECTTTTTTCTTCCEEEECCTTCCEEC--TTS
T ss_pred EECCCC-cCCccCcccccCCCCCCEEECCCCcccc--------------CChhHccccccCCEEECCCCccceeC--hhh
Confidence 999999 8999998768999999999999998865 34566889999999999876443322 112
Q ss_pred CcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCc
Q 008415 361 PKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT 440 (566)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 440 (566)
...+.+|+.|++++ +. ........+..+++|+.|++.+|.+..++.. ....+++|+.|++++|+.+..++
T Consensus 148 ~~~l~~L~~L~l~~-n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 148 FSGLNSLEQLTLEK-CN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDY--------SFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp STTCTTCCEEEEES-CC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTT--------CSCSCTTCCEEEEECCTTCCEEC
T ss_pred ccCCCCCCEEECCC-Cc-CcccChhHhcccCCCcEEeCCCCcCcEeChh--------hcccCcccceeeCCCCccccccC
Confidence 33457899999997 42 2333333477889999999999985544321 22467999999999988877765
Q ss_pred h-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCC-CCCCCCccEEeecCCC
Q 008415 441 W-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN-PLPFPKLKKIDVCHCP 518 (566)
Q Consensus 441 ~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~-~~~~p~L~~L~i~~C~ 518 (566)
. ....++|++|++++|. ++.++. ..+..+++|+.|+|+++. ++.++.. ...+++|+.|++.++
T Consensus 218 ~~~~~~~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n- 282 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCN-LTAVPY------------LAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG- 282 (477)
T ss_dssp TTTTTTCCCSEEEEESSC-CCSCCH------------HHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-
T ss_pred cccccCccccEEECcCCc-ccccCH------------HHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-
Confidence 4 5556799999999985 333331 235678999999999864 6666543 466899999999996
Q ss_pred CCCCC-CCCCccccCCcEEEechhh
Q 008415 519 QLKKL-PLNSSSAKERRVVIEGEKK 542 (566)
Q Consensus 519 ~L~~l-P~~~~~~l~~L~i~~~~~~ 542 (566)
+++.+ |..+... +.|+.++....
T Consensus 283 ~l~~~~~~~~~~l-~~L~~L~L~~N 306 (477)
T 2id5_A 283 QLAVVEPYAFRGL-NYLRVLNVSGN 306 (477)
T ss_dssp CCSEECTTTBTTC-TTCCEEECCSS
T ss_pred ccceECHHHhcCc-ccCCEEECCCC
Confidence 67775 4444433 66666555443
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.7e-20 Score=208.58 Aligned_cols=297 Identities=16% Similarity=0.164 Sum_probs=172.5
Q ss_pred ccccccccEEEeecCCccc-ccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCCCcc-ccccc------
Q 008415 195 FEEWEGAKRVSLMGNGIRS-LSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINISLRK-LPSGI------ 265 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i------ 265 (566)
...+.++++|++.+|.+.. ++.+..+++|++|++++|.+.. +|.. ++++++|++|++++| .+.. +|..-
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN-QFVGPIPPLPLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSS-CCEESCCCCCCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCC-cccCccCccccCCCCE
Confidence 4556788888888888765 4557888899999999998874 4444 888999999999888 6653 22210
Q ss_pred ---------cccCcchhcc-ccCcEecccCcccCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchH-h
Q 008415 266 ---------RGLPQELKAL-EKLRYLNLDYTRFLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLM-K 333 (566)
Q Consensus 266 ---------~~LP~~i~~L-~~L~~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 333 (566)
..+|..+..+ ++|++|++++| .+. .+|.. ++.+++|++|++.+|.... ..+ .
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l~~--------------~ip~~ 337 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPF-FGSCSLLESLALSSNNFSG--------------ELPMD 337 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGG-GGGCTTCCEEECCSSEEEE--------------ECCHH
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchH-HhcCCCccEEECCCCcccC--------------cCCHH
Confidence 2567777665 88888888888 555 56666 8888888888888887653 122 2
Q ss_pred hhcCCCCCceEEEEEcCccchhccccCCcc---------------------------cccceEEEEecccCCCCCeeeec
Q 008415 334 ELLGSKHLNVLSWTFRSSLGVQNFLKYPKL---------------------------VSITQSVLVKSGVHTSPPFNVLH 386 (566)
Q Consensus 334 ~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~ 386 (566)
.++.+++|+.|+++.+.... .++..... ..+|+.|.+.+ +. ........
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~-n~-l~~~~p~~ 413 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN-NG-FTGKIPPT 413 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS-SE-EEEECCGG
T ss_pred HHhcCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC-Cc-cccccCHH
Confidence 36777777777776543210 11111111 22344444443 21 00000112
Q ss_pred cccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccc
Q 008415 387 LAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIIS 464 (566)
Q Consensus 387 l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~ 464 (566)
+..+++|+.|++++|. ...++ .....+++|+.|++++|.....+|. ++.+++|++|++++|.....+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p---------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-- 482 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIP---------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-- 482 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCC---------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--
T ss_pred HhcCCCCCEEECcCCcccCccc---------HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC--
Confidence 4455556666665555 22211 1112455666666666543334433 555666666666665433222
Q ss_pred cccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEE
Q 008415 465 VDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVV 536 (566)
Q Consensus 465 ~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i 536 (566)
|..+..+++|+.|+|.++.--..+|...+.+++|+.|++++|.-...+|..+... +.|+.
T Consensus 483 -----------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~ 542 (768)
T 3rgz_A 483 -----------PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIW 542 (768)
T ss_dssp -----------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCE
T ss_pred -----------CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCE
Confidence 2345566667777776654333455445556677777776663333466555444 33433
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=5e-20 Score=191.83 Aligned_cols=250 Identities=17% Similarity=0.186 Sum_probs=115.9
Q ss_pred cccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccccccc
Q 008415 189 LTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268 (566)
Q Consensus 189 ~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L 268 (566)
+..+|....+.++++|++.+|.+..++ +..+++|++|++++|.+..++ ++++++|++|++++| .++.+|
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~------ 122 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD------ 122 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC------
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec------
Confidence 333344444455555555555555543 445555555555555554443 445555555555555 554332
Q ss_pred CcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF 348 (566)
Q Consensus 269 P~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 348 (566)
++++++|++|++++| .++.+| ++.+++|++|++.+|.... .+ .++.+++|+.|+++.
T Consensus 123 ---~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~---------------~~-~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 123 ---VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT---------------KL-DVTPQTQLTTLDCSF 179 (457)
T ss_dssp ---CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC---------------CC-CCTTCTTCCEEECCS
T ss_pred ---CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc---------------cc-ccccCCcCCEEECCC
Confidence 345555555555555 455542 4455555555555553322 01 345556666666654
Q ss_pred cCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEE
Q 008415 349 RSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTV 428 (566)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L 428 (566)
+....++ ....++|+.|.+++ +. ... ..+..+++|+.|++++|.+..++ ...+++|+.|
T Consensus 180 n~l~~l~-----l~~l~~L~~L~l~~-N~-l~~---~~l~~l~~L~~L~Ls~N~l~~ip-----------~~~l~~L~~L 238 (457)
T 3bz5_A 180 NKITELD-----VSQNKLLNRLNCDT-NN-ITK---LDLNQNIQLTFLDCSSNKLTEID-----------VTPLTQLTYF 238 (457)
T ss_dssp SCCCCCC-----CTTCTTCCEEECCS-SC-CSC---CCCTTCTTCSEEECCSSCCSCCC-----------CTTCTTCSEE
T ss_pred Cccceec-----cccCCCCCEEECcC-Cc-CCe---eccccCCCCCEEECcCCcccccC-----------ccccCCCCEE
Confidence 4333321 22234566666654 21 111 13455566666666666533322 1245556666
Q ss_pred ecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccC
Q 008415 429 SVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY 500 (566)
Q Consensus 429 ~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~ 500 (566)
+++++ .+..++ ++.+++|+.|+++++. ++.+.-....... .+ ..+.+++|+.|++++++.+..++
T Consensus 239 ~l~~N-~l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~--~~--~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 239 DCSVN-PLTELD-VSTLSKLTTLHCIQTD-LLEIDLTHNTQLI--YF--QAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ECCSS-CCSCCC-CTTCTTCCEEECTTCC-CSCCCCTTCTTCC--EE--ECTTCTTCCCCCCTTCTTCCEEE
T ss_pred EeeCC-cCCCcC-HHHCCCCCEEeccCCC-CCEEECCCCccCC--cc--cccccccCCEEECCCCcccceec
Confidence 66554 333333 3344444444433221 1111100000000 01 12355677777777766555554
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.8e-20 Score=185.04 Aligned_cols=104 Identities=21% Similarity=0.369 Sum_probs=50.9
Q ss_pred ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 199 EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
..++.|++.+|.+..++ .+..+++|++|++++|.+..++...|+++++|++|++++| .++.+|..+ . +
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-------~--~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-------P--S 123 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-------C--T
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccc-------c--c
Confidence 34555555555554442 2444555555555555554443333455555555555555 554444322 1 4
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
+|++|++++| .++.+|...+..+++|++|++.+|..
T Consensus 124 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 124 SLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp TCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred cCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcc
Confidence 5555555555 45555443345555555555555544
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=3.8e-20 Score=205.23 Aligned_cols=327 Identities=12% Similarity=0.095 Sum_probs=186.9
Q ss_pred ccccccccEEEeecCCccc------------------ccCC-C--CCCCccEEEecCCcc-cccchHHHhcCccCCEEec
Q 008415 195 FEEWEGAKRVSLMGNGIRS------------------LSEI-P--TCPRLVTLLLGGNRI-EEITDGFFQSMSTLRVLSL 252 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l-~~lp~~~~~~l~~Lr~L~L 252 (566)
+..+.+++.|++++|.+.. +|.. . .+++|++|++++|.+ ..+|.. ++++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 5566789999999998887 6653 3 789999999999864 467766 889999999999
Q ss_pred CCCCC-Ccc--ccccccccCcchhccccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccc--c---c--c
Q 008415 253 RINIS-LRK--LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVT--E---E--E 320 (566)
Q Consensus 253 ~~~~~-i~~--lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~--~---~--~ 320 (566)
++| . ++. +|..+..++..+..+++|++|++++| .++.+|. . ++++++|++|++++|.+.... . . .
T Consensus 523 s~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD 599 (876)
T ss_dssp TTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBCCCCCTTSEESE
T ss_pred cCC-CCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccchhhcCCCcceE
Confidence 999 6 663 55443211111222236666666666 5666665 4 666666666666666543210 0 0 0
Q ss_pred ccccccCccchHhhhcCCCC-CceEEEEEcCccchhccccCCcccccceEEEEecccCC---------------------
Q 008415 321 GNVLCEDAEPLMKELLGSKH-LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT--------------------- 378 (566)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------- 378 (566)
.++........+..+..+++ |+.|+++.+....++....... ..+|+.|++++ +.-
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcC-CcCCCccccchhhhccccCCCcCE
Confidence 00000011123344666666 7777776554332222111100 01245555544 211
Q ss_pred -------CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hh--ccCCc
Q 008415 379 -------SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LV--FVQNL 448 (566)
Q Consensus 379 -------~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~--~l~~L 448 (566)
...+....+..+++|+.|++++|.+..++...... .......+++|+.|+|++| .+..+|. +. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-ccccccccCCccEEECCCC-CCccchHHhhhccCCCc
Confidence 01110001223456666666665533333211100 0000112348888888886 4556665 54 78888
Q ss_pred ceEeEecccCcccccccccccccccccCCCCccccccceeeccccc------cccccCCCCCCCCCccEEeecCCCCCCC
Q 008415 449 KVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT------NLKSVYPNPLPFPKLKKIDVCHCPQLKK 522 (566)
Q Consensus 449 ~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~------~L~~l~~~~~~~p~L~~L~i~~C~~L~~ 522 (566)
+.|+|++|.... + |..+..+++|+.|+|++++ -...+|.....+++|+.|++++| .+..
T Consensus 756 ~~L~Ls~N~L~~-l-------------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 756 SNMDVSYNCFSS-F-------------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK 820 (876)
T ss_dssp CEEECCSSCCSS-C-------------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred CEEEeCCCCCCc-c-------------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence 888888875432 3 3467789999999997633 23456666677899999999997 5688
Q ss_pred CCCCCccccCCcEEEechhhhhhcc
Q 008415 523 LPLNSSSAKERRVVIEGEKKWWEEL 547 (566)
Q Consensus 523 lP~~~~~~l~~L~i~~~~~~~~~~l 547 (566)
+|..+. +.|+.++.....+..+
T Consensus 821 Ip~~l~---~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 821 VDEKLT---PQLYILDIADNPNISI 842 (876)
T ss_dssp CCSCCC---SSSCEEECCSCTTCEE
T ss_pred cCHhhc---CCCCEEECCCCCCCcc
Confidence 998765 3555555544444433
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.2e-19 Score=179.31 Aligned_cols=235 Identities=17% Similarity=0.179 Sum_probs=132.9
Q ss_pred EecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415 183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260 (566)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~ 260 (566)
...+..+..+|.. -...++.|++.+|.+..++. +..+++|++|++++|.+..+++..++.+++|++|++++| .++.
T Consensus 37 ~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 114 (330)
T 1xku_A 37 QCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKE 114 (330)
T ss_dssp ECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSB
T ss_pred EecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCc
Confidence 3334444444431 12466777777777766653 566777777777777766663333677777777777777 6666
Q ss_pred ccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCC
Q 008415 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH 340 (566)
Q Consensus 261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 340 (566)
+|..+ . ++|++|++++| .++.++...+.++++|++|++.+|.... .+.....++++++
T Consensus 115 l~~~~-------~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~l~~ 172 (330)
T 1xku_A 115 LPEKM-------P--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS------------SGIENGAFQGMKK 172 (330)
T ss_dssp CCSSC-------C--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG------------GGBCTTGGGGCTT
T ss_pred cChhh-------c--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc------------cCcChhhccCCCC
Confidence 65433 2 56777777777 6666666556777777777777766543 1123445666677
Q ss_pred CceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCcc
Q 008415 341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQS 420 (566)
Q Consensus 341 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~ 420 (566)
|+.|+++.+....++. .. ..+|+.|++++ +. ........+..+++|+.|++++|.+..++.. ...
T Consensus 173 L~~L~l~~n~l~~l~~---~~--~~~L~~L~l~~-n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~ 237 (330)
T 1xku_A 173 LSYIRIADTNITTIPQ---GL--PPSLTELHLDG-NK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNG--------SLA 237 (330)
T ss_dssp CCEEECCSSCCCSCCS---SC--CTTCSEEECTT-SC-CCEECTGGGTTCTTCCEEECCSSCCCEECTT--------TGG
T ss_pred cCEEECCCCccccCCc---cc--cccCCEEECCC-Cc-CCccCHHHhcCCCCCCEEECCCCcCceeChh--------hcc
Confidence 7777766543332221 11 14566666665 21 1222222355566666666666664333211 113
Q ss_pred CCCcccEEecccCcCCCCCch-hhccCCcceEeEeccc
Q 008415 421 GFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCY 457 (566)
Q Consensus 421 ~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~ 457 (566)
.+++|+.|+|+++ .+..+|. +..+++|++|++++|.
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 4566666666665 3444443 5666666666666653
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=193.15 Aligned_cols=122 Identities=22% Similarity=0.269 Sum_probs=98.6
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+...+..+..+|..-. .++++|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .+
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l 81 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL 81 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CC
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ce
Confidence 45556666777775332 79999999999998875 4688999999999999999886555999999999999999 99
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCCCCcc
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+.+|. . .+++|++|++++| .++. +|.. ++++++|++|++++|.+..
T Consensus 82 ~~lp~-------~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 82 VKISC-------H--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CEEEC-------C--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred eecCc-------c--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccch
Confidence 87664 2 7889999999998 6775 4566 8899999999998887643
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=3.3e-20 Score=201.23 Aligned_cols=194 Identities=10% Similarity=0.018 Sum_probs=99.8
Q ss_pred hhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccc
Q 008415 334 ELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEE 413 (566)
Q Consensus 334 ~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~ 413 (566)
.+..+++|+.|+++.+..............+++|+.|++++ +. ..... ..+..+++|+.|++++|.+..++.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~----- 416 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTE----- 416 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS-CS-EEEEC-CCCTTCTTCCEEECTTSEEESTTT-----
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC-Cc-cccch-hhccCCCCCCeeECCCCccCCccC-----
Confidence 34567888888888654433321122222335677777776 32 11111 235566667777776666222110
Q ss_pred ccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccc------------cccccCCCCc
Q 008415 414 VKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRD------------ISVIIGSEHN 480 (566)
Q Consensus 414 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------------~~~~l~~~~~ 480 (566)
......+++|+.|++++|......+. ++.+++|++|++++|.....+....+... .....+..+.
T Consensus 417 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 417 --FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp --TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred --hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 00112344444444444432222222 34444444444444432211111000000 0001234567
Q ss_pred cccccceeecccccccccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEec
Q 008415 481 FFAQLEYLSISWGTNLKSV-YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEG 539 (566)
Q Consensus 481 ~f~~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~ 539 (566)
.+++|+.|+++++. ++.+ +.....+++|+.|++++| +++.+|..+....+.|+.++.
T Consensus 495 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 495 TLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEEC
T ss_pred ccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEc
Confidence 88999999999874 5544 555677899999999997 599999886555334655543
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.1e-19 Score=196.92 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=90.2
Q ss_pred ccccccccEEEeecCCcccc--cCCCCCCCccEEEecCCcccccchHHHhcCccCC--EEecCCCCCCccccccc-----
Q 008415 195 FEEWEGAKRVSLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLR--VLSLRINISLRKLPSGI----- 265 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l--~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr--~L~L~~~~~i~~lp~~i----- 265 (566)
...+.++++|.+.+|.+..+ +.+..+++|++|++++|.+..++...++.+++|+ .|++++| .+..+++..
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTTCE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccChhHhhhcc
Confidence 34556788888888877765 5566688888888888888877666688888888 7888888 766554321
Q ss_pred ---------------------------------------------------------------ccc-CcchhccccCcEe
Q 008415 266 ---------------------------------------------------------------RGL-PQELKALEKLRYL 281 (566)
Q Consensus 266 ---------------------------------------------------------------~~L-P~~i~~L~~L~~L 281 (566)
..+ |..++++++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 112 2237788999999
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
++++| .++.+|.. ++.+++|++|++.+|.+..
T Consensus 284 ~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 284 DLTAT-HLSELPSG-LVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp ECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSB
T ss_pred eccCC-ccCCCChh-hcccccCCEEECccCCcCc
Confidence 99999 89999987 8999999999999988764
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=8.9e-20 Score=195.38 Aligned_cols=146 Identities=25% Similarity=0.276 Sum_probs=106.1
Q ss_pred EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+...+..+..+|..- ..++++|++++|.+..++ .+..+++|++|++++|.+..++...|+++++|++|+|++| .++
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC
Confidence 344445566666522 368899999999888764 4688899999999999888877656888999999999999 887
Q ss_pred cccccccccCcchhccccCcEecccCcccCCcc--chhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSII--PHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG 337 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l--P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (566)
.+|... ++++++|++|++++| .++.+ |.. ++++++|++|++++|..... .....+++
T Consensus 88 ~~~~~~------~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~-------------~~~~~~~~ 146 (549)
T 2z81_A 88 SLSSSW------FGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFSE-------------IRRIDFAG 146 (549)
T ss_dssp SCCHHH------HTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCCE-------------ECTTTTTT
T ss_pred ccCHHH------hccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCccccc-------------cCHhhhhc
Confidence 766542 688888888888888 67643 454 78888888888888764321 12235666
Q ss_pred CCCCceEEEEEcC
Q 008415 338 SKHLNVLSWTFRS 350 (566)
Q Consensus 338 L~~L~~L~i~~~~ 350 (566)
+++|+.|+++.+.
T Consensus 147 l~~L~~L~L~~n~ 159 (549)
T 2z81_A 147 LTSLNELEIKALS 159 (549)
T ss_dssp CCEEEEEEEEETT
T ss_pred ccccCeeeccCCc
Confidence 6777777776543
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.8e-20 Score=183.65 Aligned_cols=217 Identities=18% Similarity=0.286 Sum_probs=148.2
Q ss_pred ccccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415 199 EGAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK 277 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~ 277 (566)
.+++.|++.++.+..+|. +..+++|++|++++|.+..+|.. ++++++|++|+|++| .++.+|.. ++++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~-------l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPAS-------IASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGG-------GGGCTT
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHH-------HhcCcC
Confidence 589999999999998875 57799999999999999999987 899999999999999 88766654 699999
Q ss_pred CcEecccCcccCCccchhhhcC---------CCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415 278 LRYLNLDYTRFLSIIPHQLISG---------FSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF 348 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 348 (566)
|++|++++|..+..+|.. ++. +++|++|++.+|.+.. .+..++++++|+.|+++.
T Consensus 152 L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 152 LRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS---------------LPASIANLQNLKSLKIRN 215 (328)
T ss_dssp CCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC---------------CCGGGGGCTTCCEEEEES
T ss_pred CCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc---------------chHhhcCCCCCCEEEccC
Confidence 999999998788889886 554 7777777777766543 334456666666666663
Q ss_pred cCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccE
Q 008415 349 RSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNT 427 (566)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~ 427 (566)
+....+ ...+..+++|+.|++++|. ...++. ....+++|+.
T Consensus 216 N~l~~l-----------------------------~~~l~~l~~L~~L~Ls~n~~~~~~p~---------~~~~l~~L~~ 257 (328)
T 4fcg_A 216 SPLSAL-----------------------------GPAIHHLPKLEELDLRGCTALRNYPP---------IFGGRAPLKR 257 (328)
T ss_dssp SCCCCC-----------------------------CGGGGGCTTCCEEECTTCTTCCBCCC---------CTTCCCCCCE
T ss_pred CCCCcC-----------------------------chhhccCCCCCEEECcCCcchhhhHH---------HhcCCCCCCE
Confidence 211100 0124455666666666666 443221 1134566666
Q ss_pred EecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecc
Q 008415 428 VSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSIS 491 (566)
Q Consensus 428 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~ 491 (566)
|+|++|+....+|. ++.+++|++|+|++|.....++ ..+..+++|+.+.+.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-------------~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-------------SLIAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-------------GGGGGSCTTCEEECC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-------------HHHhhccCceEEeCC
Confidence 66666655555553 5666666666666665555433 244555555555554
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=3.7e-20 Score=201.29 Aligned_cols=323 Identities=12% Similarity=0.108 Sum_probs=192.4
Q ss_pred ccccccccEEEeecCCccc------------------ccC-CC--CCCCccEEEecCCccc-ccchHHHhcCccCCEEec
Q 008415 195 FEEWEGAKRVSLMGNGIRS------------------LSE-IP--TCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSL 252 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~------------------l~~-~~--~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L 252 (566)
+..+.+++.|++.+|.+.. +|. +. .+++|++|++++|.+. .+|.. ++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 4556788999999988887 664 35 6889999999988754 57766 888999999999
Q ss_pred CCCCC-CccccccccccCcchhcc------ccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccccc----
Q 008415 253 RINIS-LRKLPSGIRGLPQELKAL------EKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVTEE---- 319 (566)
Q Consensus 253 ~~~~~-i~~lp~~i~~LP~~i~~L------~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~---- 319 (566)
++| . ++. ..+|..++++ ++|++|++++| .++.+|. . ++++++|++|++++|.+......
T Consensus 281 s~n-~~l~~-----~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 281 ACN-RGISG-----EQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp TTC-TTSCH-----HHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred cCC-CCCcc-----ccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccchhhhCCC
Confidence 988 6 652 0234445665 88888888888 6778887 5 88888888888888776521000
Q ss_pred ----cccccccCccchHhhhcCCCC-CceEEEEEcCccchhccccCCcccccceEEEEecccCC----------------
Q 008415 320 ----EGNVLCEDAEPLMKELLGSKH-LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT---------------- 378 (566)
Q Consensus 320 ----~~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------- 378 (566)
..++........+..+..+++ |+.|+++.+....++....... ..+|+.|++++ +.-
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~-l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS-VSVMSAIDFSY-NEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC-SSCEEEEECCS-SCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcc-cCccCEEECcC-CcCCCcchhhhcccccccc
Confidence 000011111133445666666 7777776554332222111100 12455555544 211
Q ss_pred --------------CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hh
Q 008415 379 --------------SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LV 443 (566)
Q Consensus 379 --------------~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~ 443 (566)
...+....+..+++|+.|++++|.+..++...... .......+++|+.|+|+++ .+..+|. +.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFN-KLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-TTEECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-ccccccccCCccEEECcCC-cCCccChhhh
Confidence 11110001223455666666665533333221100 0000012237888888875 4446654 54
Q ss_pred --ccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc------ccccccCCCCCCCCCccEEeec
Q 008415 444 --FVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG------TNLKSVYPNPLPFPKLKKIDVC 515 (566)
Q Consensus 444 --~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~------~~L~~l~~~~~~~p~L~~L~i~ 515 (566)
.+++|+.|+|++|.... + |..+..+++|+.|+|+++ .-...+|.....+++|+.|+++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-i-------------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-F-------------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-C-------------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred hccCCCcCEEECCCCCCCC-c-------------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 78888888888775433 3 345678899999999543 3345566667778999999999
Q ss_pred CCCCCCCCCCCCccccCCcEEEechhhhhhccc
Q 008415 516 HCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQ 548 (566)
Q Consensus 516 ~C~~L~~lP~~~~~~l~~L~i~~~~~~~~~~l~ 548 (566)
+| +++.+|..+. +.|+.++.....+..+.
T Consensus 575 ~N-~l~~ip~~~~---~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 575 SN-DIRKVNEKIT---PNISVLDIKDNPNISID 603 (636)
T ss_dssp SS-CCCBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred CC-cCCccCHhHh---CcCCEEECcCCCCcccc
Confidence 97 5688998755 45555555544444433
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=8.8e-20 Score=189.95 Aligned_cols=258 Identities=17% Similarity=0.169 Sum_probs=198.4
Q ss_pred ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
...+.++++|+++++.+..+|.+..+++|++|++++|.+..+| ++.+++|++|++++| .++.+| +++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~---------~~~ 104 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD---------VTP 104 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---------CTT
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee---------cCC
Confidence 4456899999999999999998899999999999999998886 789999999999999 887754 589
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV 354 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~ 354 (566)
+++|++|++++| .++.+| ++.+++|++|++++|.+.. . .++.+++|+.|+++.+...
T Consensus 105 l~~L~~L~L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~~---------------l--~l~~l~~L~~L~l~~n~~~-- 161 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD---VSQNPLLTYLNCARNTLTE---------------I--DVSHNTQLTELDCHLNKKI-- 161 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC---CTTCTTCCEEECTTSCCSC---------------C--CCTTCTTCCEEECTTCSCC--
T ss_pred CCcCCEEECCCC-cCCeec---CCCCCcCCEEECCCCccce---------------e--ccccCCcCCEEECCCCCcc--
Confidence 999999999999 899885 7899999999999998764 1 3778899999998865311
Q ss_pred hccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415 355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR 434 (566)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 434 (566)
..+ ....+.+|+.|++++ +. ... ..+..+++|+.|++++|.+..++ ...+++|+.|+++++
T Consensus 162 ~~~--~~~~l~~L~~L~ls~-n~-l~~---l~l~~l~~L~~L~l~~N~l~~~~-----------l~~l~~L~~L~Ls~N- 222 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSF-NK-ITE---LDVSQNKLLNRLNCDTNNITKLD-----------LNQNIQLTFLDCSSN- 222 (457)
T ss_dssp CCC--CCTTCTTCCEEECCS-SC-CCC---CCCTTCTTCCEEECCSSCCSCCC-----------CTTCTTCSEEECCSS-
T ss_pred ccc--ccccCCcCCEEECCC-Cc-cce---eccccCCCCCEEECcCCcCCeec-----------cccCCCCCEEECcCC-
Confidence 111 133457899999997 42 222 23778899999999999855432 246899999999996
Q ss_pred CCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCcccc----------ccceeeccccccccccCCCCC
Q 008415 435 KAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFA----------QLEYLSISWGTNLKSVYPNPL 504 (566)
Q Consensus 435 ~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~----------~L~~L~L~~~~~L~~l~~~~~ 504 (566)
.+..+| ++.+++|+.|+++++.. +.++ ...++ +|+.|++.++..+..++. .
T Consensus 223 ~l~~ip-~~~l~~L~~L~l~~N~l-~~~~---------------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~ 283 (457)
T 3bz5_A 223 KLTEID-VTPLTQLTYFDCSVNPL-TELD---------------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--E 283 (457)
T ss_dssp CCSCCC-CTTCTTCSEEECCSSCC-SCCC---------------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--T
T ss_pred cccccC-ccccCCCCEEEeeCCcC-CCcC---------------HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--c
Confidence 567777 88999999999998853 3222 22344 455566666655555542 3
Q ss_pred CCCCccEEeecCCCCCCCCCCC
Q 008415 505 PFPKLKKIDVCHCPQLKKLPLN 526 (566)
Q Consensus 505 ~~p~L~~L~i~~C~~L~~lP~~ 526 (566)
.+++|+.|++++|+.+..+|..
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECT
T ss_pred ccccCCEEECCCCcccceeccC
Confidence 5678888888888766666543
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.4e-19 Score=180.87 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=191.4
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
..++.+.+.++.+..+|... .++|++|++++|.+..++...|+++++|++|++++| .++.++ |..++++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~------~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIH------EKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEEC------GGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccC------HhHhhCcCCC
Confidence 36889999999998887533 479999999999999887756999999999999999 888664 3447999999
Q ss_pred cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc
Q 008415 279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL 358 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~ 358 (566)
++|++++| .++.+|.. +. ++|++|++.+|.+.. .....++++++|+.|+++.+.........
T Consensus 105 ~~L~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 105 QKLYISKN-HLVEIPPN-LP--SSLVELRIHDNRIRK--------------VPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CEEECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCC--------------CCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CEEECCCC-cCCccCcc-cc--ccCCEEECCCCccCc--------------cCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 99999999 89999986 54 899999999998765 23445788999999999876543322222
Q ss_pred cCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC
Q 008415 359 KYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD 438 (566)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 438 (566)
...... +|+.|++++ +. ...+ + ..-.++|+.|++++|.+..++.. ....+++|+.|+++++ .+..
T Consensus 167 ~~~~~l-~L~~L~l~~-n~-l~~l--~-~~~~~~L~~L~l~~n~i~~~~~~--------~l~~l~~L~~L~L~~N-~l~~ 231 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISE-AK-LTGI--P-KDLPETLNELHLDHNKIQAIELE--------DLLRYSKLYRLGLGHN-QIRM 231 (332)
T ss_dssp TSSCSC-CCSCCBCCS-SB-CSSC--C-SSSCSSCSCCBCCSSCCCCCCTT--------SSTTCTTCSCCBCCSS-CCCC
T ss_pred ccccCC-ccCEEECcC-CC-CCcc--C-ccccCCCCEEECCCCcCCccCHH--------HhcCCCCCCEEECCCC-cCCc
Confidence 222222 677777776 32 1111 1 11226888899988885443221 2246788899999886 4555
Q ss_pred Cc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-------CCCCCc
Q 008415 439 LT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-------LPFPKL 509 (566)
Q Consensus 439 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-------~~~p~L 509 (566)
++ .+..+++|++|++++|.. ..+ |..+..+++|+.|+++++ .++.++... ..++.|
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l-~~l-------------p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKL-SRV-------------PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCC-CBC-------------CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCB
T ss_pred CChhHhhCCCCCCEEECCCCcC-eec-------------ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccc
Confidence 54 378889999999988743 333 345677888999999875 466665432 115778
Q ss_pred cEEeecCCCC
Q 008415 510 KKIDVCHCPQ 519 (566)
Q Consensus 510 ~~L~i~~C~~ 519 (566)
+.|++.++|-
T Consensus 297 ~~L~l~~N~~ 306 (332)
T 2ft3_A 297 NGISLFNNPV 306 (332)
T ss_dssp SEEECCSSSS
T ss_pred cceEeecCcc
Confidence 8899988763
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=4e-19 Score=177.39 Aligned_cols=150 Identities=20% Similarity=0.181 Sum_probs=113.7
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
.+++.+.+.++.+..+|.. -.++|++|++++|.+..++...|+++++|++|++++| .++.++ |..++++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~------~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKIS------PGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBC------TTTTTTCTTC
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeC------HHHhcCCCCC
Confidence 4788899988888888753 2479999999999999998866899999999999999 887653 3447999999
Q ss_pred cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc
Q 008415 279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL 358 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~ 358 (566)
++|++++| .++.+|.. +. ++|++|++.+|.+.. .....+.++++|+.|+++.+.........
T Consensus 103 ~~L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 103 ERLYLSKN-QLKELPEK-MP--KTLQELRVHENEITK--------------VRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CEEECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB--------------BCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CEEECCCC-cCCccChh-hc--ccccEEECCCCcccc--------------cCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 99999999 89999986 44 899999999998765 35566888999999988855332211111
Q ss_pred cCCcccccceEEEEec
Q 008415 359 KYPKLVSITQSVLVKS 374 (566)
Q Consensus 359 ~~~~~~~~L~~L~l~~ 374 (566)
.....+++|+.|.+++
T Consensus 165 ~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 165 GAFQGMKKLSYIRIAD 180 (330)
T ss_dssp TGGGGCTTCCEEECCS
T ss_pred hhccCCCCcCEEECCC
Confidence 2222234555555554
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.6e-20 Score=184.42 Aligned_cols=127 Identities=18% Similarity=0.288 Sum_probs=100.2
Q ss_pred ccccEEEeecCCccc---cc-CCCCCCCccEEEecC-Cccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 199 EGAKRVSLMGNGIRS---LS-EIPTCPRLVTLLLGG-NRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~---l~-~~~~~~~Lr~L~l~~-~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
.++++|++.++.+.. +| .+..+++|++|++++ +.+. .+|.. ++++++|++|++++| .++ ..+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~------~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVS------GAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCE------EECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeC------CcCCHHH
Confidence 478899999988874 44 467889999999995 6665 56766 889999999999999 876 2344557
Q ss_pred hccccCcEecccCcccCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC-CCceEEEEEc
Q 008415 273 KALEKLRYLNLDYTRFLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK-HLNVLSWTFR 349 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~i~~~ 349 (566)
+++++|++|++++| .++ .+|.. ++.+++|++|++.+|.+.. ..+..+..++ +|+.|+++.+
T Consensus 122 ~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~--------------~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 122 SQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISG--------------AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEE--------------ECCGGGGCCCTTCCEEECCSS
T ss_pred hCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccC--------------cCCHHHhhhhhcCcEEECcCC
Confidence 89999999999999 666 67776 8999999999999988764 3566777776 8888887744
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.8e-19 Score=186.87 Aligned_cols=311 Identities=16% Similarity=0.127 Sum_probs=205.6
Q ss_pred EEecCCccccC--CCccccccccEEEeecCCcc-ccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCC
Q 008415 182 LVHAGVELTEA--PKFEEWEGAKRVSLMGNGIR-SLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256 (566)
Q Consensus 182 ~~~~~~~~~~~--~~~~~~~~lr~Lsl~~~~~~-~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~ 256 (566)
+...+..+..+ ..+..+.++++|++.+|.+. .++ .+..+++|++|++++|.+..++...|+++++|++|++++|
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 113 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC- 113 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-
Confidence 44444444443 23556789999999999875 443 4688999999999999998875545899999999999999
Q ss_pred CCcc-ccccccccCcchhccccCcEecccCcccCCcc-chhhhcCCCCCcEEEecCCCCccccc-ccccc----------
Q 008415 257 SLRK-LPSGIRGLPQELKALEKLRYLNLDYTRFLSII-PHQLISGFSKLEVLRLFGCGFWVVTE-EEGNV---------- 323 (566)
Q Consensus 257 ~i~~-lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l-P~~~i~~L~~L~~L~l~~~~~~~~~~-~~~~~---------- 323 (566)
.++. +|.. ..++++++|++|++++| .++.+ |...++++++|++|++++|.+..... .....
T Consensus 114 ~l~~~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 114 NLDGAVLSG-----NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp CCBTHHHHS-----STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCccccCc-----ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 8874 2221 12688999999999999 77777 54447899999999999987654200 00000
Q ss_pred ccc---C------ccchHhhhcCCCCCceEEEEEcCccc-h-hccccC--------------------------------
Q 008415 324 LCE---D------AEPLMKELLGSKHLNVLSWTFRSSLG-V-QNFLKY-------------------------------- 360 (566)
Q Consensus 324 ~~~---~------~~~~~~~l~~L~~L~~L~i~~~~~~~-~-~~~~~~-------------------------------- 360 (566)
... . .......+..+++|+.|+++.+.... . ..+...
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 000 0 00001112344667777776543211 0 000000
Q ss_pred ---CcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCC
Q 008415 361 ---PKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAK 437 (566)
Q Consensus 361 ---~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 437 (566)
.....+|+.|++++ +. ........+..+++|+.|++++|.+..++.. ....+++|++|+|+++. +.
T Consensus 268 ~~~~~~~~~L~~L~l~~-n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~-l~ 336 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSK-SK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDN--------AFWGLTHLLKLNLSQNF-LG 336 (455)
T ss_dssp TTGGGTTSCCCEEECCS-SC-CCEECTTTTTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSC-CC
T ss_pred ccccccccCceEEEecC-cc-ccccchhhcccCCCCCEEECCCCcccccChh--------HhcCcccCCEEECCCCc-cC
Confidence 00014677777776 32 2222222477889999999999995544322 22468999999999974 55
Q ss_pred CC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccEEee
Q 008415 438 DL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKKIDV 514 (566)
Q Consensus 438 ~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i 514 (566)
.+ + .++.+++|++|++++|.. ..+. +..+..+++|++|+|+++ .++.++... ..+++|+.|++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l-~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHI-RALG------------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCC-CEEC------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred CcChhHhcCcccCCEEECCCCcc-cccC------------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence 54 3 378899999999999854 3332 236778999999999985 588877653 67899999999
Q ss_pred cCCCCCCCCC
Q 008415 515 CHCPQLKKLP 524 (566)
Q Consensus 515 ~~C~~L~~lP 524 (566)
++++---..|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 9975333344
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=7.5e-19 Score=197.43 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=118.6
Q ss_pred eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCCC
Q 008415 180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINI 256 (566)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~~ 256 (566)
..+.+.+.++..+|. ...++++|++++|.+..+. .+..+++|++|++++| .+..+++..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 456667777888887 5589999999999998864 5789999999999999 455775555999999999999999
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCc-cch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhh
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-IPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE 334 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (566)
.+..++ |..++++++|++|++++| .+.. +|. ..++++++|++|++++|..... .....
T Consensus 84 ~l~~~~------p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-------------~~~~~ 143 (844)
T 3j0a_A 84 KIYFLH------PDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-------------YLHPS 143 (844)
T ss_dssp CCCEEC------TTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-------------CCCGG
T ss_pred cCcccC------HhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccc-------------ccchh
Confidence 888653 444799999999999999 6765 443 3378999999999999987641 12356
Q ss_pred hcCCCCCceEEEEEcC
Q 008415 335 LLGSKHLNVLSWTFRS 350 (566)
Q Consensus 335 l~~L~~L~~L~i~~~~ 350 (566)
++++++|+.|+++.+.
T Consensus 144 ~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp GGTCSSCCEEEEESSC
T ss_pred HhhCCCCCEEECCCCc
Confidence 8899999999998654
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1.5e-19 Score=193.62 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=104.0
Q ss_pred EEecCCccccCC--CccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 182 LVHAGVELTEAP--KFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
+...+..+...+ ....+.++++|++.+|.+..++ .+..+++|++|++++|.+..++...|+++++|++|++++| .
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-P 109 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-C
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-c
Confidence 334444444332 3566789999999999998876 4789999999999999999998887999999999999999 8
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
++.++ .|..++++++|++|++++|..+..+|...++++++|++|++.+|....
T Consensus 110 l~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 110 YQTLG-----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CSSSC-----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccccc-----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 87542 244579999999999999955788885449999999999999988764
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=2.9e-19 Score=198.72 Aligned_cols=207 Identities=20% Similarity=0.155 Sum_probs=111.0
Q ss_pred CCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc-cCcEecccCcc--------
Q 008415 218 PTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE-KLRYLNLDYTR-------- 287 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~-~L~~L~L~~~~-------- 287 (566)
..+++|++|++++|.+. .+|...++++++|++|++++| .+. ..+|..++++. +|++|++++|.
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~------~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFS------GELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-EEE------ECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC-ccC------ccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 44455555555555444 444444555555555555555 443 13344444444 44444444441
Q ss_pred -----------------cCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 288 -----------------FLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 288 -----------------~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
.+. .+|.. ++.+++|++|++++|.... ..+..++.+++|+.|+++.+
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~--------------~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSG--------------TIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEES--------------CCCGGGGGCTTCCEEECCSS
T ss_pred hhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCCcccC--------------cccHHHhcCCCCCEEECCCC
Confidence 222 33433 4445555555555444332 24445566666666666644
Q ss_pred CccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEE
Q 008415 350 SSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTV 428 (566)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L 428 (566)
.... ..+.....+++|+.|++++ +. ........+..+++|+.|++++|. ...+| .| ...+++|+.|
T Consensus 453 ~l~~--~~p~~~~~l~~L~~L~L~~-N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-------~~--~~~l~~L~~L 519 (768)
T 3rgz_A 453 MLEG--EIPQELMYVKTLETLILDF-ND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIP-------KW--IGRLENLAIL 519 (768)
T ss_dssp CCCS--CCCGGGGGCTTCCEEECCS-SC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCC-------GG--GGGCTTCCEE
T ss_pred cccC--cCCHHHcCCCCceEEEecC-Cc-ccCcCCHHHhcCCCCCEEEccCCccCCcCC-------hH--HhcCCCCCEE
Confidence 3221 1122223346677777776 32 121222246677788888888777 33332 11 2357888888
Q ss_pred ecccCcCCCCCch-hhccCCcceEeEecccCc
Q 008415 429 SVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDM 459 (566)
Q Consensus 429 ~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l 459 (566)
+|++|.....+|. ++.+++|+.|++++|...
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 8888765545554 788888888888877644
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=184.00 Aligned_cols=124 Identities=24% Similarity=0.235 Sum_probs=103.7
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
+++++++++++.+|.... ++|++|++++|.+..++...|.++++|++|+|++| .++.++ |..++++++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~------~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLD------ISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEE------GGGGTTCTTCCEE
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcC------hHHhhcccCCCEE
Confidence 678999999999886433 89999999999999988766999999999999999 888664 3447999999999
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
++++| .++.+|.. .+++|++|++++|.+... ..+..++++++|+.|+++.+.
T Consensus 75 ~Ls~N-~l~~lp~~---~l~~L~~L~L~~N~l~~~-------------~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 75 DLSHN-KLVKISCH---PTVNLKHLDLSFNAFDAL-------------PICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECCSS-CCCEEECC---CCCCCSEEECCSSCCSSC-------------CCCGGGGGCTTCCEEEEEESS
T ss_pred ecCCC-ceeecCcc---ccCCccEEeccCCccccc-------------cchhhhccCCcceEEEecCcc
Confidence 99999 89999983 899999999999987641 234567777777777777654
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=3.9e-18 Score=183.02 Aligned_cols=126 Identities=26% Similarity=0.245 Sum_probs=103.3
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
...+++++++++++.+|... .++|++|++++|.+..++...|+++++|++|+|++| .++.+++ ..++++++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------~~~~~l~~L 102 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDF------HVFLFNQDL 102 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECT------TTTTTCTTC
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCH------HHhCCCCCC
Confidence 34589999999999988643 389999999999999998766999999999999999 9987653 347999999
Q ss_pred cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
++|++++| .++.+|.. .+++|++|++++|.+... ..+..++++++|+.|+++.+
T Consensus 103 ~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l-------------~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 103 EYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVL-------------PVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBC-------------CCCGGGGGCTTCCEEEEECS
T ss_pred CEEECCCC-cCCccCcc---ccccCCEEECCCCCcccc-------------CchHhhcccCcccEEecCCC
Confidence 99999999 89999984 899999999999987641 12345667777777777754
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=7.8e-19 Score=177.04 Aligned_cols=269 Identities=17% Similarity=0.118 Sum_probs=129.3
Q ss_pred EEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecc
Q 008415 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNL 283 (566)
Q Consensus 204 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L 283 (566)
.+..++.++.+|.. -.++|++|++++|.+..++...+.++++|++|++++| .++.++.. .++++++|++|++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L 107 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEED------SFSSLGSLEHLDL 107 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTT------TTTTCTTCCEEEC
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHh------hcCCCCCCCEEEC
Confidence 34444444444431 1235555555555555555433555555555555555 55443321 2455555555555
Q ss_pred cCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchH-hhhcCCCCCceEEEEEcC-ccchhccccCC
Q 008415 284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLM-KELLGSKHLNVLSWTFRS-SLGVQNFLKYP 361 (566)
Q Consensus 284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~L~i~~~~-~~~~~~~~~~~ 361 (566)
++| .++.+|.+.++++++|++|++++|.+.. ... ..++++++|+.|+++.+. ...+. ....
T Consensus 108 s~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~ 170 (353)
T 2z80_A 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKT--------------LGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDF 170 (353)
T ss_dssp CSS-CCSSCCHHHHTTCTTCSEEECTTCCCSS--------------SCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTT
T ss_pred CCC-cCCcCCHhHhCCCccCCEEECCCCCCcc--------------cCchhhhccCCCCcEEECCCCccccccC--HHHc
Confidence 555 4555555445555555555555554432 011 234445555555555432 11110 0111
Q ss_pred cccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCc-
Q 008415 362 KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT- 440 (566)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~- 440 (566)
..+++|+.|++++ +. ........+..+++|++|++++|.+..++... ...+++|+.|+++++. +..++
T Consensus 171 ~~l~~L~~L~l~~-n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~L~~n~-l~~~~~ 239 (353)
T 2z80_A 171 AGLTFLEELEIDA-SD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIF--------VDVTSSVECLELRDTD-LDTFHF 239 (353)
T ss_dssp TTCCEEEEEEEEE-TT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHH--------HHHTTTEEEEEEESCB-CTTCCC
T ss_pred cCCCCCCEEECCC-CC-cCccCHHHHhccccCCeecCCCCccccchhhh--------hhhcccccEEECCCCc-cccccc
Confidence 2224555555554 21 11111223555666666666666633222110 1235666777776643 33321
Q ss_pred ----hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccEEeec
Q 008415 441 ----WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKKIDVC 515 (566)
Q Consensus 441 ----~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i~ 515 (566)
.....+.++.++++++.....-.. .+|..+..+++|+.|+++++ .++.++... ..+++|++|++.
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~---------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLF---------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHH---------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cccccccccchhhccccccccccCcchh---------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 123355666666665532211000 01223556777777877775 466777654 567788888887
Q ss_pred CCC
Q 008415 516 HCP 518 (566)
Q Consensus 516 ~C~ 518 (566)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=4.3e-19 Score=192.84 Aligned_cols=286 Identities=15% Similarity=0.146 Sum_probs=185.9
Q ss_pred ccccccccEEEeecCC-ccc--ccC-C------CCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCc-cc
Q 008415 195 FEEWEGAKRVSLMGNG-IRS--LSE-I------PTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLR-KL 261 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~-~~~--l~~-~------~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~-~l 261 (566)
+..+.++++|++.+|. +.. +|. + ..+++|++|++++|.+..+|. . ++++++|++|++++| .++ .+
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~-l~~l~~L~~L~L~~N-~l~g~i 346 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYN-QLEGKL 346 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH-HTTCTTCCEEECCSC-CCEEEC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh-hccCCCCCEEeCcCC-cCccch
Confidence 5567899999999997 764 543 2 334899999999998888987 5 899999999999999 887 66
Q ss_pred cccc----------------cccCcchhcccc-CcEecccCcccCCccchhhhcCCC--CCcEEEecCCCCccccccccc
Q 008415 262 PSGI----------------RGLPQELKALEK-LRYLNLDYTRFLSIIPHQLISGFS--KLEVLRLFGCGFWVVTEEEGN 322 (566)
Q Consensus 262 p~~i----------------~~LP~~i~~L~~-L~~L~L~~~~~l~~lP~~~i~~L~--~L~~L~l~~~~~~~~~~~~~~ 322 (566)
| .+ ..+|..++++++ |++|++++| .++.+|.. +..+. +|++|++++|.+..
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~------- 416 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI-FDAKSVSVMSAIDFSYNEIGS------- 416 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSC-CCTTCSSCEEEEECCSSCTTT-------
T ss_pred h-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchh-hhhcccCccCEEECcCCcCCC-------
Confidence 6 43 234444444444 555555555 34444443 33322 45555555444432
Q ss_pred ccccCccchHhhhc-------CCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccc-------
Q 008415 323 VLCEDAEPLMKELL-------GSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLA------- 388 (566)
Q Consensus 323 ~~~~~~~~~~~~l~-------~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~------- 388 (566)
..+..+. .+.+|+.|+++.+....++.. ....+++|+.|++++ +. ...+....+.
T Consensus 417 -------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~-N~-l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 417 -------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMG-NM-LTEIPKNSLKDENENFK 485 (636)
T ss_dssp -------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCS-SC-CSBCCSSSSEETTEECT
T ss_pred -------cchhhhcccccccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCC-CC-CCCcCHHHhcccccccc
Confidence 2333444 667888888886544332211 011246899999987 43 2222211222
Q ss_pred cccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcc--ccccc
Q 008415 389 YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDME--EIISV 465 (566)
Q Consensus 389 ~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~--~i~~~ 465 (566)
.+++|+.|++++|.+..++.. .....+++|+.|+|+++. +..+|. ++.+++|+.|+|++|..+. .+..
T Consensus 486 ~l~~L~~L~Ls~N~l~~lp~~-------~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~- 556 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKLSDD-------FRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR- 556 (636)
T ss_dssp TGGGCCEEECCSSCCCBCCGG-------GSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-
T ss_pred ccCCccEEECcCCcCCccChh-------hhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccc-
Confidence 234999999999995555421 111268999999999964 555654 8899999999997654211 1110
Q ss_pred ccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415 466 DKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLP 524 (566)
Q Consensus 466 ~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP 524 (566)
.+|..+..+++|+.|+|+++. ++.+|... +++|+.|++++|+ +..++
T Consensus 557 --------~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 557 --------EWPEGITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNP-NISID 603 (636)
T ss_dssp --------CCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSCT-TCEEE
T ss_pred --------cChHHHhcCCCCCEEECCCCc-CCccCHhH--hCcCCEEECcCCC-Ccccc
Confidence 134567889999999999975 68887653 3899999999985 44443
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=2.2e-18 Score=187.76 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=75.0
Q ss_pred cCCCcccEEecccCcCCCCCc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccc
Q 008415 420 SGFRSLNTVSVHYCRKAKDLT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK 497 (566)
Q Consensus 420 ~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~ 497 (566)
..+++|+.|+++++.....+. .+..+++|++|+|++|. ++.+. |..+..+++|++|+|+++ +++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~------------~~~f~~l~~L~~L~Ls~N-~l~ 531 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS------------PTAFNSLSSLQVLNMSHN-NFF 531 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC------------TTTTTTCTTCCEEECTTS-CCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcC------------hHHHcCCCCCCEEECCCC-cCC
Confidence 356888999998876555432 27788999999999884 44443 235778999999999985 577
Q ss_pred ccCCC-CCCCCCccEEeecCCCCCCCCCC-CCccccCCcEEEec
Q 008415 498 SVYPN-PLPFPKLKKIDVCHCPQLKKLPL-NSSSAKERRVVIEG 539 (566)
Q Consensus 498 ~l~~~-~~~~p~L~~L~i~~C~~L~~lP~-~~~~~l~~L~i~~~ 539 (566)
.++.. ...+++|+.|+++++ +|+.+|. .+......|+.++.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC
T ss_pred CCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe
Confidence 77643 456899999999995 6877654 44444345665543
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=185.25 Aligned_cols=320 Identities=16% Similarity=0.132 Sum_probs=203.2
Q ss_pred ccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc-c------
Q 008415 195 FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG-I------ 265 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i------ 265 (566)
+..+.++++|++.+|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|++++| .++.+|.. +
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccc
Confidence 344567777777777766654 2466677777777777666666544666777777777776 66665541 1
Q ss_pred ----------c--ccCcchhccccCcEecccCcccCCccchhhhcCCCCC----cEEEecCCCCcccc---------cc-
Q 008415 266 ----------R--GLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKL----EVLRLFGCGFWVVT---------EE- 319 (566)
Q Consensus 266 ----------~--~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L----~~L~l~~~~~~~~~---------~~- 319 (566)
. .+|..++++++|++|++++| .++.++...++.+++| ++|++.+|...... +.
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 1 46888899999999999998 6777654336655555 55555554332100 00
Q ss_pred ---------------------------------------------------------------------------ccc--
Q 008415 320 ---------------------------------------------------------------------------EGN-- 322 (566)
Q Consensus 320 ---------------------------------------------------------------------------~~~-- 322 (566)
...
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 000
Q ss_pred ---ccc---cCccc-----------------------h----------------HhhhcCCCCCceEEEEEcCccchhcc
Q 008415 323 ---VLC---EDAEP-----------------------L----------------MKELLGSKHLNVLSWTFRSSLGVQNF 357 (566)
Q Consensus 323 ---~~~---~~~~~-----------------------~----------------~~~l~~L~~L~~L~i~~~~~~~~~~~ 357 (566)
+.. ...+. . ......+++|+.|+++.+........
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc
Confidence 000 00000 0 00015789999999987654433221
Q ss_pred ccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCC
Q 008415 358 LKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAK 437 (566)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 437 (566)
......+.+|+.|++++ +. ..... ..+..+++|+.|++.+|.+...+. ......+++|++|++++|....
T Consensus 366 ~~~~~~~~~L~~L~l~~-n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSF-NG-VITMS-SNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp EHHHHTCSCCCEEECCS-CS-EEEEE-EEEETCTTCCEEECTTSEEESCTT-------SCTTTTCTTCCEEECTTSCCEE
T ss_pred cccccccCccCEEECCC-Cc-ccccc-ccccccCCCCEEEccCCccccccc-------hhhhhcCCCCCEEeCcCCcccc
Confidence 22233347899999997 42 11111 137788999999999988433211 1123468999999999986555
Q ss_pred CCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccccc-CCCCCCCCCccEEeec
Q 008415 438 DLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-YPNPLPFPKLKKIDVC 515 (566)
Q Consensus 438 ~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~ 515 (566)
..+. +..+++|++|++++|...... +|..+..+++|+.|+++++. ++.+ +.....+++|++|+++
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~------------~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENF------------LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGE------------ECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred cchhhhhcCCcCcEEECcCCcCcccc------------chhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCC
Confidence 4443 788999999999998654211 23467889999999999975 6665 5566778999999999
Q ss_pred CCCCCCCCCCCCccccCCcEEEech
Q 008415 516 HCPQLKKLPLNSSSAKERRVVIEGE 540 (566)
Q Consensus 516 ~C~~L~~lP~~~~~~l~~L~i~~~~ 540 (566)
+| +++.+|......++.|+.++..
T Consensus 503 ~n-~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 503 SN-QLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred CC-cCCCCCHHHhhcccCCcEEEec
Confidence 97 7888876533333566555433
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=179.22 Aligned_cols=239 Identities=18% Similarity=0.162 Sum_probs=171.7
Q ss_pred EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+.+.+..+..+|..- ..+++.|++++|.+..++ .+..+++|++|++++|.+..++...|.++++|++|+|++| .++
T Consensus 48 v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~ 125 (440)
T 3zyj_A 48 VICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLT 125 (440)
T ss_dssp EECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCS
T ss_pred EEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCC
Confidence 455555666666422 367889999998888765 4678889999999999888888766888999999999999 888
Q ss_pred cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK 339 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 339 (566)
.+|... +..+++|++|++++| .++.+|...+.++++|++|++.+|..... .....+.+++
T Consensus 126 ~~~~~~------~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------------i~~~~~~~l~ 185 (440)
T 3zyj_A 126 TIPNGA------FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY-------------ISEGAFEGLS 185 (440)
T ss_dssp SCCTTT------SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-------------ECTTTTTTCS
T ss_pred eeCHhH------hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce-------------eCcchhhccc
Confidence 777543 688899999999998 78888876688899999999988655431 2233577788
Q ss_pred CCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCc
Q 008415 340 HLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQ 419 (566)
Q Consensus 340 ~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~ 419 (566)
+|+.|+++.+....++. ...+.+|+.|++++ + .........+..+++|+.|++.+|.+..++.. ..
T Consensus 186 ~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~ 251 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN----LTPLIKLDELDLSG-N-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--------AF 251 (440)
T ss_dssp SCCEEECTTSCCSSCCC----CTTCSSCCEEECTT-S-CCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------SS
T ss_pred ccCeecCCCCcCccccc----cCCCcccCEEECCC-C-ccCccChhhhccCccCCEEECCCCceeEEChh--------hh
Confidence 88888888665444332 23346788888876 3 22222233567778888888888775544322 12
Q ss_pred cCCCcccEEecccCcCCCCCch--hhccCCcceEeEeccc
Q 008415 420 SGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCY 457 (566)
Q Consensus 420 ~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~ 457 (566)
..+++|+.|+|+++ .+..++. +..+++|+.|+|++++
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 35678888888875 5666554 6678888888887765
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=3.2e-18 Score=188.10 Aligned_cols=126 Identities=22% Similarity=0.210 Sum_probs=96.8
Q ss_pred EEecCCccccCCC--ccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 182 LVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 182 ~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
+...+..+..++. +..+.++++|++.+|.+..++. +..+++|++|++++|.+..+|...|+++++|++|++++| .
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~ 108 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-S 108 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-C
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-c
Confidence 4444444555543 5566889999999888877643 467889999999999888888866889999999999999 8
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
++.+|.. .++++++|++|++++| .+..++.+.++++++|++|++++|.+..
T Consensus 109 l~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 109 IQKIKNN------PFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCCCCSC------TTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred cCccChh------HccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccc
Confidence 8776643 3788889999999988 6776654447888999999998887654
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=173.40 Aligned_cols=268 Identities=19% Similarity=0.211 Sum_probs=196.6
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+...+..+..+|.. -..++++|++++|.+..++. +..+++|++|++++|.+..++...|+++++|++|++++| .+
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence 355566677777752 23689999999999998875 788999999999999999887666899999999999999 99
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG 337 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (566)
+.+|... ++++++|++|++++| .++.+|. +.++.+++|++|++.+|.... ......++.
T Consensus 113 ~~~~~~~------~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------~~~~~~~~~ 172 (353)
T 2z80_A 113 SNLSSSW------FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT-------------KIQRKDFAG 172 (353)
T ss_dssp SSCCHHH------HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------EECTTTTTT
T ss_pred CcCCHhH------hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc-------------ccCHHHccC
Confidence 8877653 789999999999999 8999987 448999999999999985332 123456888
Q ss_pred CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccccccc
Q 008415 338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKL 417 (566)
Q Consensus 338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~ 417 (566)
+++|+.|+++.+..... .......+++|+.|++++ +. ........+..+++|+.|++++|.+..++.... .
T Consensus 173 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~-n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~ 243 (353)
T 2z80_A 173 LTFLEELEIDASDLQSY--EPKSLKSIQNVSHLILHM-KQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-----S 243 (353)
T ss_dssp CCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEEC-SC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred CCCCCEEECCCCCcCcc--CHHHHhccccCCeecCCC-Cc-cccchhhhhhhcccccEEECCCCcccccccccc-----c
Confidence 99999999997654332 122334457899999997 32 222222234557899999999998544332211 1
Q ss_pred CccCCCcccEEecccCcCCCC-----Cc-hhhccCCcceEeEecccCcccccccccccccccccCCC-Cccccccceeec
Q 008415 418 FQSGFRSLNTVSVHYCRKAKD-----LT-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSE-HNFFAQLEYLSI 490 (566)
Q Consensus 418 ~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~-~~~f~~L~~L~L 490 (566)
.....+.++.+++.++. +.+ +| .+..+++|++|++++|.. +.++ .. +..+++|+.|+|
T Consensus 244 ~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~-------------~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQL-KSVP-------------DGIFDRLTSLQKIWL 308 (353)
T ss_dssp ---CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCC-------------TTTTTTCTTCCEEEC
T ss_pred cccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCCC-CccC-------------HHHHhcCCCCCEEEe
Confidence 12345677888887753 322 33 378899999999998853 3443 23 478999999999
Q ss_pred cccc
Q 008415 491 SWGT 494 (566)
Q Consensus 491 ~~~~ 494 (566)
.+++
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9865
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.2e-18 Score=179.76 Aligned_cols=240 Identities=20% Similarity=0.179 Sum_probs=166.4
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+.+.+..+..+|.. -..++++|++.+|.+..++ .+..+++|++|++++|.+..++...|.++++|++|+|++| .+
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WL 135 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cC
Confidence 344555566666642 2357888898888888763 4678888999999988888877666888889999999988 88
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.+|... ++++++|++|++++| .++.+|...+.++++|++|++.+|..... .....+..+
T Consensus 136 ~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-------------i~~~~~~~l 195 (452)
T 3zyi_A 136 TVIPSGA------FEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY-------------ISEGAFEGL 195 (452)
T ss_dssp SBCCTTT------SSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-------------ECTTTTTTC
T ss_pred CccChhh------hcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc-------------cChhhccCC
Confidence 8777554 678888999999888 78888876688888999999888655431 223356778
Q ss_pred CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415 339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF 418 (566)
Q Consensus 339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 418 (566)
++|+.|+++.+....++. ...+.+|+.|++++ + .........+..+++|+.|++++|.+..+... .
T Consensus 196 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~ 261 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSG-N-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN--------A 261 (452)
T ss_dssp TTCCEEECTTSCCSSCCC----CTTCTTCCEEECTT-S-CCSEECGGGGTTCTTCCEEECTTSCCCEECTT--------T
T ss_pred CCCCEEECCCCccccccc----ccccccccEEECcC-C-cCcccCcccccCccCCCEEEeCCCcCceECHH--------H
Confidence 888888887655443332 23346777788776 2 22222223466777888888887775443321 1
Q ss_pred ccCCCcccEEecccCcCCCCCch--hhccCCcceEeEeccc
Q 008415 419 QSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCY 457 (566)
Q Consensus 419 ~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~ 457 (566)
...+++|+.|+|+++ .+..++. +..+++|+.|+|++++
T Consensus 262 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 235677888888775 5555544 5667888888887664
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=1.3e-18 Score=192.98 Aligned_cols=295 Identities=17% Similarity=0.183 Sum_probs=192.4
Q ss_pred ccccccccEEEeecCC-ccc--cc--------CCCCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCccc
Q 008415 195 FEEWEGAKRVSLMGNG-IRS--LS--------EIPTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLRKL 261 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~-~~~--l~--------~~~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~~l 261 (566)
+..+.+++.|.+++|. +.. +| .+..+++|+.|++++|.+..+|. . ++++++|++|+|++| .++.+
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-l~~L~~L~~L~Ls~N-~l~~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-LQKMVKLGLLDCVHN-KVRHL 588 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH-HTTCTTCCEEECTTS-CCCBC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh-hhcCCCCCEEECCCC-Ccccc
Confidence 5567899999999987 664 44 34566799999999998888888 5 899999999999999 88776
Q ss_pred cccccccCcchhccccCcEecccCcccCCccchhhhcCCCC-CcEEEecCCCCcccccc--------cc--cccccCc--
Q 008415 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSK-LEVLRLFGCGFWVVTEE--------EG--NVLCEDA-- 328 (566)
Q Consensus 262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~-L~~L~l~~~~~~~~~~~--------~~--~~~~~~~-- 328 (566)
| . ++++++|++|++++| .+..+|.. +..+++ |++|++++|.+...... +. ++.....
T Consensus 589 p-~-------~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 589 E-A-------FGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp C-C-------CCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred h-h-------hcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 6 3 577777777777777 66677766 777777 77777777765421000 00 0000000
Q ss_pred --cchHhhhc--CCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeec-------cccccCcceEE
Q 008415 329 --EPLMKELL--GSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLH-------LAYMENLQKFE 397 (566)
Q Consensus 329 --~~~~~~l~--~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------l~~~~~L~~L~ 397 (566)
+..+..+. .+.+|+.|+++.+....++... ...+++|+.|++++ +. ...+.... +.++++|+.|+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--~~~l~~L~~L~Ls~-N~-L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--FATGSPISTIILSN-NL-MTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--HHTTCCCSEEECCS-CC-CSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHH--HccCCCCCEEECCC-Cc-CCccChHHhccccccccccCCccEEE
Confidence 11111222 2346777777765443222111 11346889999987 32 22221111 22345999999
Q ss_pred EeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccC
Q 008415 398 LESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIG 476 (566)
Q Consensus 398 l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~ 476 (566)
+++|.+..++.. .....+++|+.|+|+++ .+..+|. ++.+++|+.|+|++|..+..- ... ..+|
T Consensus 735 Ls~N~L~~lp~~-------l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N---~l~----~~ip 799 (876)
T 4ecn_A 735 LRFNKLTSLSDD-------FRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGN---RIL----RQWP 799 (876)
T ss_dssp CCSSCCCCCCGG-------GSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCC---BCC----CCCC
T ss_pred CCCCCCccchHH-------hhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccc---ccc----ccCh
Confidence 999995555421 21136899999999996 4555664 889999999999885521100 000 0134
Q ss_pred CCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415 477 SEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLP 524 (566)
Q Consensus 477 ~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP 524 (566)
..+..+++|+.|+|+++. +..+|... +++|+.|++++|+ +..++
T Consensus 800 ~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNP-NISID 843 (876)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCT-TCEEE
T ss_pred HHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCC-CCccC
Confidence 577889999999999975 58888653 4799999999986 54443
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=3.8e-18 Score=177.93 Aligned_cols=244 Identities=17% Similarity=0.139 Sum_probs=166.5
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
..+.+...+..+..+|.. -.++|++|++++|.+..++...|+++++|++|+|++| .++.++.. .+.++++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~------~~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVG------AFNGLASLN 126 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT------TTTTCTTCC
T ss_pred CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChh------hccCcccCC
Confidence 346677777788888753 3479999999999999887666999999999999999 99877643 479999999
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|+|++| .++.+|.+.++.+++|++|++++|.+.. .....+.++++|+.|+++.++. +..+..
T Consensus 127 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~l~~~~~--l~~i~~ 189 (452)
T 3zyi_A 127 TLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIES--------------IPSYAFNRVPSLMRLDLGELKK--LEYISE 189 (452)
T ss_dssp EEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCE--------------ECTTTTTTCTTCCEEECCCCTT--CCEECT
T ss_pred EEECCCC-cCCccChhhhcccCCCCEEECCCCCcce--------------eCHhHHhcCCcccEEeCCCCCC--ccccCh
Confidence 9999999 8999998778999999999999998765 2344678889999988875321 111111
Q ss_pred -CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC
Q 008415 360 -YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD 438 (566)
Q Consensus 360 -~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 438 (566)
....+.+|+.|++++ +. .. .++.+..+++|+.|++++|.+..++.. ....+++|+.|+|+++. +..
T Consensus 190 ~~~~~l~~L~~L~L~~-n~-l~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~n~-l~~ 256 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGM-CN-IK--DMPNLTPLVGLEELEMSGNHFPEIRPG--------SFHGLSSLKKLWVMNSQ-VSL 256 (452)
T ss_dssp TTTTTCTTCCEEECTT-SC-CS--SCCCCTTCTTCCEEECTTSCCSEECGG--------GGTTCTTCCEEECTTSC-CCE
T ss_pred hhccCCCCCCEEECCC-Cc-cc--ccccccccccccEEECcCCcCcccCcc--------cccCccCCCEEEeCCCc-Cce
Confidence 122335677777765 32 11 223456667777777777764433221 11356677777777653 333
Q ss_pred Cc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccc
Q 008415 439 LT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT 494 (566)
Q Consensus 439 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~ 494 (566)
++ .+..+++|+.|+|++|. +..+.. ..+..+++|+.|+|.+.+
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNN-LSSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred ECHHHhcCCCCCCEEECCCCc-CCccCh------------HHhccccCCCEEEccCCC
Confidence 32 25667777777777663 333321 234556777777776543
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=5.1e-18 Score=176.34 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=171.0
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
..+.+...+..+..+|.. -.++++.|++++|.+..++...|.++++|++|+|++| .++.++.. .+.++++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~------~~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIG------AFNGLANLN 115 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGG------GGTTCSSCC
T ss_pred CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChh------hccCCccCC
Confidence 345777778888888753 3479999999999999888766999999999999999 99877643 379999999
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|++++| .++.+|.+.+..+++|++|++++|.+.. .....+..+++|+.|++..++. +..+..
T Consensus 116 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------~~~~~~~~l~~L~~L~l~~~~~--l~~i~~ 178 (440)
T 3zyj_A 116 TLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIES--------------IPSYAFNRIPSLRRLDLGELKR--LSYISE 178 (440)
T ss_dssp EEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCE--------------ECTTTTTTCTTCCEEECCCCTT--CCEECT
T ss_pred EEECCCC-cCCeeCHhHhhccccCceeeCCCCcccc--------------cCHHHhhhCcccCEeCCCCCCC--cceeCc
Confidence 9999999 8999998669999999999999998765 3344678889999998875321 111111
Q ss_pred -CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC
Q 008415 360 -YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD 438 (566)
Q Consensus 360 -~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 438 (566)
....+.+|+.|++++ +. .. .++.+..+++|+.|++++|.+..++.. ....+++|++|+|+++ .+..
T Consensus 179 ~~~~~l~~L~~L~L~~-n~-l~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~ 245 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAM-CN-LR--EIPNLTPLIKLDELDLSGNHLSAIRPG--------SFQGLMHLQKLWMIQS-QIQV 245 (440)
T ss_dssp TTTTTCSSCCEEECTT-SC-CS--SCCCCTTCSSCCEEECTTSCCCEECTT--------TTTTCTTCCEEECTTC-CCCE
T ss_pred chhhcccccCeecCCC-Cc-Cc--cccccCCCcccCEEECCCCccCccChh--------hhccCccCCEEECCCC-ceeE
Confidence 122346777777776 32 12 233466677777777777774443221 1235677777777775 3444
Q ss_pred Cc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccc
Q 008415 439 LT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT 494 (566)
Q Consensus 439 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~ 494 (566)
++ .+..+++|++|+|++|. ++.+.. ..+..+++|+.|+|.+.+
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNN-LTLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSC-CCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred EChhhhcCCCCCCEEECCCCC-CCccCh------------hHhccccCCCEEEcCCCC
Confidence 32 26667777777777763 333321 234566777777776643
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.3e-18 Score=169.99 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=51.7
Q ss_pred EEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecc
Q 008415 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNL 283 (566)
Q Consensus 204 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L 283 (566)
+...++.++.+|. .-.++|++|++++|.+..+|..+|+++++|++|++++| .++.+. ..|..+..+++|++|++
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKG----CCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEE----EEEHHHHSCSCCCEEEC
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCccc----CcccccccccccCEEEC
Confidence 4444444444443 12245555555555555555544555555555555555 544321 11222345555555555
Q ss_pred cCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
++| .+..+|.. +..+++|++|++++|.+
T Consensus 86 s~n-~i~~l~~~-~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 86 SFN-GVITMSSN-FLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp CSC-SEEEEEEE-EETCTTCCEEECTTSEE
T ss_pred CCC-ccccChhh-cCCCCCCCEEECCCCcc
Confidence 555 45555554 55555555555555544
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.5e-17 Score=186.89 Aligned_cols=300 Identities=17% Similarity=0.155 Sum_probs=196.7
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
+.++.++++++.+|. ..++|++|++++|.+..++...|+++++|++|+|++|..+..++ |..+++|++|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~------~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID------KEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC------TTTTSSCTTCCEE
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC------HHHhcCCCCCCEE
Confidence 456677788888987 66899999999999988765559999999999999993344443 4458999999999
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhh--hcCCCCCceEEEEEcCccchhcccc
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE--LLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|++| .+..++++.++++++|++|++++|.... ..+.. ++++++|+.|+++.+...... ...
T Consensus 79 ~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~ 142 (844)
T 3j0a_A 79 DLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSD--------------AVLKDGYFRNLKALTRLDLSKNQIRSLY-LHP 142 (844)
T ss_dssp ECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSS--------------CCSTTCCCSSCSSCCEEEEESCCCCCCC-CCG
T ss_pred ECCCC-cCcccCHhHccCCcccCEeeCcCCCCCc--------------ccccCccccccCCCCEEECCCCcccccc-cch
Confidence 99999 7888744449999999999999998764 23333 889999999999976543321 111
Q ss_pred CCcccccceEEEEecccCCCCCeeeeccccc--cCcceEEEeccc-cceeeeccccc-----------------------
Q 008415 360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYM--ENLQKFELESCN-LEEMKIDSTEE----------------------- 413 (566)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~-l~~l~~~~~~~----------------------- 413 (566)
....+++|+.|++++ +. ........+..+ ++|+.|++++|. ....+......
T Consensus 143 ~~~~L~~L~~L~Ls~-N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSS-NQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp GGGTCSSCCEEEEES-SC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred hHhhCCCCCEEECCC-Cc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH
Confidence 233457899999987 32 121111223333 455555555554 22111110000
Q ss_pred cc------------------------------------ccCccCCCcccEEecccCcCCCCC-c-hhhccCCcceEeEec
Q 008415 414 VK------------------------------------KLFQSGFRSLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGD 455 (566)
Q Consensus 414 ~~------------------------------------~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~ 455 (566)
+. .......++|+.|+++++. +..+ + .++.+++|+.|++++
T Consensus 221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAY 299 (844)
T ss_dssp TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEES
T ss_pred HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCC
Confidence 00 0000012567777776653 3332 2 266777888888877
Q ss_pred ccCcccccccccccccccccCCCCccccccceeecccccccccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCc
Q 008415 456 CYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERR 534 (566)
Q Consensus 456 ~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L 534 (566)
|.... +. +..+..+++|+.|+|+++. ++.+ +.....+++|+.|++.++ +++.+|......++.|
T Consensus 300 n~i~~-~~------------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 300 NKINK-IA------------DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CCCCE-EC------------TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCC
T ss_pred CcCCC-CC------------hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCC
Confidence 64322 22 2356788999999998864 5555 445667899999999997 6888776533334666
Q ss_pred EEEechhhh
Q 008415 535 VVIEGEKKW 543 (566)
Q Consensus 535 ~i~~~~~~~ 543 (566)
+.++.....
T Consensus 365 ~~L~Ls~N~ 373 (844)
T 3j0a_A 365 QTLDLRDNA 373 (844)
T ss_dssp CEEEEETCC
T ss_pred CEEECCCCC
Confidence 666555443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=5.6e-18 Score=167.15 Aligned_cols=144 Identities=21% Similarity=0.217 Sum_probs=116.3
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCccccc---chHHHhcCccCCEEecCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEI---TDGFFQSMSTLRVLSLRIN 255 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l---p~~~~~~l~~Lr~L~L~~~ 255 (566)
.+...+..+..+|. ....++++|++.+|.+..++. +..+++|++|++++|.+..+ +.. +..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC
Confidence 35556666777765 223689999999999998875 57899999999999988755 455 678999999999999
Q ss_pred CCCccccccccccCcchhccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhh
Q 008415 256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE 334 (566)
Q Consensus 256 ~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (566)
.+..+|.. +..+++|++|++++| .++.+|. ..+..+++|++|++++|.... .....
T Consensus 89 -~i~~l~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~ 145 (306)
T 2z66_A 89 -GVITMSSN-------FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------AFNGI 145 (306)
T ss_dssp -SEEEEEEE-------EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE--------------CSTTT
T ss_pred -ccccChhh-------cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc--------------cchhh
Confidence 88776654 588999999999999 7888875 348999999999999998754 34455
Q ss_pred hcCCCCCceEEEEEc
Q 008415 335 LLGSKHLNVLSWTFR 349 (566)
Q Consensus 335 l~~L~~L~~L~i~~~ 349 (566)
++.+++|+.|+++.+
T Consensus 146 ~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 146 FNGLSSLEVLKMAGN 160 (306)
T ss_dssp TTTCTTCCEEECTTC
T ss_pred cccCcCCCEEECCCC
Confidence 778888888888743
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.4e-17 Score=178.64 Aligned_cols=252 Identities=19% Similarity=0.107 Sum_probs=154.8
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~ 260 (566)
.+...+..+..+|.... .+++.|.+.+|.+..+|. .+++|++|++++|.+..+|. .+++|++|++++| .++.
T Consensus 44 ~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~ 115 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTH 115 (622)
T ss_dssp EEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCC
T ss_pred EEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCC
Confidence 45555556666654222 577778887777777765 56778888888777777775 4677778888777 7766
Q ss_pred ccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCC
Q 008415 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH 340 (566)
Q Consensus 261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 340 (566)
+|. .+.+|++|++++| .++.+|.. +++|++|++++|.+.. . + ..+.+
T Consensus 116 l~~----------~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~------------l---~---~~~~~ 162 (622)
T 3g06_A 116 LPA----------LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS------------L---P---ALPSE 162 (622)
T ss_dssp CCC----------CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC------------C---C---CCCTT
T ss_pred CCC----------CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCC------------c---C---CccCC
Confidence 553 3467777788777 67777763 3777788887776543 1 1 12355
Q ss_pred CceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCcc
Q 008415 341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQS 420 (566)
Q Consensus 341 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~ 420 (566)
|+.|++..+....++ ....+|+.|++++ +. ... ++. .+++|+.|++.+|.+..++ .
T Consensus 163 L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~-N~-l~~--l~~--~~~~L~~L~L~~N~l~~l~------------~ 218 (622)
T 3g06_A 163 LCKLWAYNNQLTSLP------MLPSGLQELSVSD-NQ-LAS--LPT--LPSELYKLWAYNNRLTSLP------------A 218 (622)
T ss_dssp CCEEECCSSCCSCCC------CCCTTCCEEECCS-SC-CSC--CCC--CCTTCCEEECCSSCCSSCC------------C
T ss_pred CCEEECCCCCCCCCc------ccCCCCcEEECCC-CC-CCC--CCC--ccchhhEEECcCCcccccC------------C
Confidence 666666654433322 2235677777765 22 111 111 2356777777776644332 1
Q ss_pred CCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccC
Q 008415 421 GFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY 500 (566)
Q Consensus 421 ~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~ 500 (566)
.+++|+.|+++++ .++.+| ..+++|+.|++++|. ++.++ . .+++|+.|+|+++ .++.+|
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp-------------~---~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP-------------M---LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC-------------C---CCTTCCEEECCSS-CCCSCC
T ss_pred CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC-------------c---ccccCcEEeCCCC-CCCcCC
Confidence 2466777777764 555555 445777777777663 33222 1 4567777777765 466666
Q ss_pred CCCCCCCCccEEeecCCC
Q 008415 501 PNPLPFPKLKKIDVCHCP 518 (566)
Q Consensus 501 ~~~~~~p~L~~L~i~~C~ 518 (566)
.....+++|+.|++.+++
T Consensus 278 ~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGGGSCTTCEEECCSCC
T ss_pred HHHhhccccCEEEecCCC
Confidence 555667777777777754
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=6.9e-17 Score=173.35 Aligned_cols=252 Identities=19% Similarity=0.154 Sum_probs=154.6
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
+++.+++.++.+..+|.... ++|++|++++|.+..+|. .+++|++|+|++| .++.+|. .+++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----------~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----------LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----------CCTTCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----------CCCCCC
Confidence 46777777777777665332 677777777777777765 3677777777777 6765552 456777
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|++++| .++.+|. .+++|++|++++|.+.. .+. .+++|+.|+++.+....++.
T Consensus 105 ~L~Ls~N-~l~~l~~----~l~~L~~L~L~~N~l~~---------------lp~---~l~~L~~L~Ls~N~l~~l~~--- 158 (622)
T 3g06_A 105 ELSIFSN-PLTHLPA----LPSGLCKLWIFGNQLTS---------------LPV---LPPGLQELSVSDNQLASLPA--- 158 (622)
T ss_dssp EEEECSC-CCCCCCC----CCTTCCEEECCSSCCSC---------------CCC---CCTTCCEEECCSSCCSCCCC---
T ss_pred EEECcCC-cCCCCCC----CCCCcCEEECCCCCCCc---------------CCC---CCCCCCEEECcCCcCCCcCC---
Confidence 7777777 6777765 35677777777776543 111 23667777777554333322
Q ss_pred CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415 360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439 (566)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 439 (566)
...+|+.|.+.+ +. ...+ + ..+++|+.|++++|.+..++ ..+++|+.|+++++ .+..+
T Consensus 159 ---~~~~L~~L~L~~-N~-l~~l--~--~~~~~L~~L~Ls~N~l~~l~------------~~~~~L~~L~L~~N-~l~~l 216 (622)
T 3g06_A 159 ---LPSELCKLWAYN-NQ-LTSL--P--MLPSGLQELSVSDNQLASLP------------TLPSELYKLWAYNN-RLTSL 216 (622)
T ss_dssp ---CCTTCCEEECCS-SC-CSCC--C--CCCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSC
T ss_pred ---ccCCCCEEECCC-CC-CCCC--c--ccCCCCcEEECCCCCCCCCC------------CccchhhEEECcCC-ccccc
Confidence 225667777765 21 1211 1 34567777777777644332 13467777777764 45555
Q ss_pred chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCC
Q 008415 440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQ 519 (566)
Q Consensus 440 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~ 519 (566)
|.. +++|+.|++++|. ++.++ ..+++|+.|+|+++ .++.++. .+++|+.|++.+| +
T Consensus 217 ~~~--~~~L~~L~Ls~N~-L~~lp----------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~ 272 (622)
T 3g06_A 217 PAL--PSGLKELIVSGNR-LTSLP----------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-Q 272 (622)
T ss_dssp CCC--CTTCCEEECCSSC-CSCCC----------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-C
T ss_pred CCC--CCCCCEEEccCCc-cCcCC----------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-C
Confidence 532 4677777777663 22221 24567777777775 4666664 5677777777775 6
Q ss_pred CCCCCCCCccccCCcEEEech
Q 008415 520 LKKLPLNSSSAKERRVVIEGE 540 (566)
Q Consensus 520 L~~lP~~~~~~l~~L~i~~~~ 540 (566)
|+.+|..+..+ +.|+.++..
T Consensus 273 L~~lp~~l~~l-~~L~~L~L~ 292 (622)
T 3g06_A 273 LTRLPESLIHL-SSETTVNLE 292 (622)
T ss_dssp CCSCCGGGGGS-CTTCEEECC
T ss_pred CCcCCHHHhhc-cccCEEEec
Confidence 77777665544 555555444
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.2e-17 Score=159.95 Aligned_cols=223 Identities=17% Similarity=0.171 Sum_probs=116.0
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
+.++..++.+..+|. ...++|++|+++++.+..++...|..+++|++|++++| .++.++ |..++++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~------~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID------AAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEEC------TTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeC------HhhcCCccCCCEE
Confidence 334444444444442 22345555555555555555444555555555555555 554432 1224555555555
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCC
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYP 361 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~ 361 (566)
++++|..++.++...+..+++|++|++.+|.+.. ..+..++.+++|+.|+++.+....+.. ...
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~ 149 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--------------LGPGLFRGLAALQYLYLQDNALQALPD--DTF 149 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC--------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTT
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE--------------ECHhHhhCCcCCCEEECCCCcccccCH--hHh
Confidence 5555522555533225555555555555555433 123334455555555555332211110 011
Q ss_pred cccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch
Q 008415 362 KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW 441 (566)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 441 (566)
..+++|+.|++++ + .........+..+++|+.|++++|.+..+.. .....+++|+.|+++++ .+..++.
T Consensus 150 ~~l~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 150 RDLGNLTHLFLHG-N-RISSVPERAFRGLHSLDRLLLHQNRVAHVHP--------HAFRDLGRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp TTCTTCCEEECCS-S-CCCEECTTTTTTCTTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred ccCCCccEEECCC-C-cccccCHHHhcCccccCEEECCCCcccccCH--------hHccCcccccEeeCCCC-cCCcCCH
Confidence 2224455555554 2 1121111236677888888888888444322 12235788888888886 4555543
Q ss_pred --hhccCCcceEeEecccCc
Q 008415 442 --LVFVQNLKVLRIGDCYDM 459 (566)
Q Consensus 442 --l~~l~~L~~L~L~~~~~l 459 (566)
+..+++|++|++++++..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEE
T ss_pred HHcccCcccCEEeccCCCcc
Confidence 777888888888877643
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=9.5e-18 Score=165.94 Aligned_cols=229 Identities=17% Similarity=0.134 Sum_probs=169.3
Q ss_pred CccccccccEEEeec-CCccc-cc-CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccC
Q 008415 194 KFEEWEGAKRVSLMG-NGIRS-LS-EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLP 269 (566)
Q Consensus 194 ~~~~~~~lr~Lsl~~-~~~~~-l~-~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP 269 (566)
.+..+.++++|++.+ |.+.. +| .+..+++|++|++++|.+. .+|.. ++++++|++|++++| .++ ..+|
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~------~~~p 142 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALS------GTLP 142 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEE------SCCC
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccC------CcCC
Confidence 355678999999994 77763 44 4688999999999999987 67776 899999999999999 886 2345
Q ss_pred cchhccccCcEecccCcccCC-ccchhhhcCCC-CCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 270 QELKALEKLRYLNLDYTRFLS-IIPHQLISGFS-KLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 270 ~~i~~L~~L~~L~L~~~~~l~-~lP~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
..++++++|++|++++| .++ .+|.. ++.++ +|++|++++|.+.. ..+..++.++ |+.|+++
T Consensus 143 ~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~--------------~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTG--------------KIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp GGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEE--------------ECCGGGGGCC-CSEEECC
T ss_pred hHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeec--------------cCChHHhCCc-ccEEECc
Confidence 55799999999999999 677 78987 99998 99999999998754 3445556665 7777776
Q ss_pred EcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccE
Q 008415 348 FRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNT 427 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~ 427 (566)
.+.. .. .....+..+++|+.|++++|.+.... +....+++|++
T Consensus 206 ~N~l---------------------~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~L~~ 248 (313)
T 1ogq_A 206 RNML---------------------EG-------DASVLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSKNLNG 248 (313)
T ss_dssp SSEE---------------------EE-------CCGGGCCTTSCCSEEECCSSEECCBG---------GGCCCCTTCCE
T ss_pred CCcc---------------------cC-------cCCHHHhcCCCCCEEECCCCceeeec---------CcccccCCCCE
Confidence 3211 00 00123566788999999888843211 11245789999
Q ss_pred EecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc
Q 008415 428 VSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS 498 (566)
Q Consensus 428 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~ 498 (566)
|+++++.....+|. +..+++|++|++++|.....++ ....+++|+.|++.+.+.+..
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip--------------~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--------------QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--------------CSTTGGGSCGGGTCSSSEEES
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC--------------CCccccccChHHhcCCCCccC
Confidence 99988754435554 8889999999998886544433 236788888888888776654
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.6e-17 Score=164.65 Aligned_cols=246 Identities=15% Similarity=0.097 Sum_probs=168.2
Q ss_pred CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI 297 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i 297 (566)
..+++|++|++++|.+..++...++.+++|++|+|++| .++.+++ ++.+++|++|++++| .++.+|.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--------~~~l~~L~~L~Ls~n-~l~~l~~--- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--------LESLSTLRTLDLNNN-YVQELLV--- 97 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--------ETTCTTCCEEECCSS-EEEEEEE---
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--------hhhcCCCCEEECcCC-ccccccC---
Confidence 55679999999999998888766899999999999999 8876543 688999999999999 7877664
Q ss_pred cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415 298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH 377 (566)
Q Consensus 298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (566)
.++|++|++++|.+... . ...+++|+.|+++.+....... .....+.+|+.|++++ +.
T Consensus 98 --~~~L~~L~l~~n~l~~~--------------~---~~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~-N~ 155 (317)
T 3o53_A 98 --GPSIETLHAANNNISRV--------------S---CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKL-NE 155 (317)
T ss_dssp --CTTCCEEECCSSCCSEE--------------E---ECCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTT-SC
T ss_pred --CCCcCEEECCCCccCCc--------------C---ccccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCC-CC
Confidence 48999999999887651 1 1236778888888665433322 1223346788888876 32
Q ss_pred CCCCeeeecc-ccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC-chhhccCCcceEeEec
Q 008415 378 TSPPFNVLHL-AYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL-TWLVFVQNLKVLRIGD 455 (566)
Q Consensus 378 ~~~~~~~~~l-~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~ 455 (566)
........+ ..+++|+.|++++|.+..++ ....+++|+.|+++++ .+..+ +.+..+++|++|++++
T Consensus 156 -l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 156 -IDTVNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp -CCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTT
T ss_pred -CCcccHHHHhhccCcCCEEECCCCcCcccc----------cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcC
Confidence 222222233 35678888888888755432 1124778888888875 45554 3477788888888887
Q ss_pred ccCcccccccccccccccccCCCCccccccceeeccccccc-cccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415 456 CYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL-KSVYPNPLPFPKLKKIDVCHCPQLKKLP 524 (566)
Q Consensus 456 ~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L-~~l~~~~~~~p~L~~L~i~~C~~L~~lP 524 (566)
|. ++.++ ..+..+++|+.|++.+++-- ..++.....+++|+.|++.+|+.++..+
T Consensus 224 N~-l~~l~-------------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 224 NK-LVLIE-------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp SC-CCEEC-------------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred Cc-ccchh-------------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 74 33332 34667788888888875422 1233333457778888887766666543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.1e-16 Score=156.16 Aligned_cols=221 Identities=19% Similarity=0.187 Sum_probs=167.9
Q ss_pred EEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC-C
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS-L 258 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~-i 258 (566)
+...+.++..+|. ....++++|+++++.+..++. +..+++|++|++++|.+..++...++.+++|++|++++| . +
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~l 93 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN-AQL 93 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC-TTC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC-CCc
Confidence 4455556666664 234789999999999998873 688999999999999998885555899999999999999 6 8
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.++. ..+..+++|++|++++| .++.++...+..+++|++|++++|.+.. .....++.+
T Consensus 94 ~~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l 152 (285)
T 1ozn_A 94 RSVDP------ATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA--------------LPDDTFRDL 152 (285)
T ss_dssp CCCCT------TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred cccCH------HHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc--------------cCHhHhccC
Confidence 76643 34789999999999999 7888866558999999999999998765 234457889
Q ss_pred CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415 339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF 418 (566)
Q Consensus 339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 418 (566)
++|+.|+++.+....+.. .....+.+|+.|++++ +. ........+..+++|+.|++++|.+..++.+.
T Consensus 153 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~-n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------- 220 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQ-NR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-------- 220 (285)
T ss_dssp TTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCS-SC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--------
T ss_pred CCccEEECCCCcccccCH--HHhcCccccCEEECCC-Cc-ccccCHhHccCcccccEeeCCCCcCCcCCHHH--------
Confidence 999999998765433222 1133457899999997 32 22232335778899999999999855443221
Q ss_pred ccCCCcccEEecccCcCCC
Q 008415 419 QSGFRSLNTVSVHYCRKAK 437 (566)
Q Consensus 419 ~~~l~~L~~L~L~~c~~l~ 437 (566)
...+++|+.|++++++..-
T Consensus 221 ~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HTTCTTCCEEECCSSCEEC
T ss_pred cccCcccCEEeccCCCccC
Confidence 2467999999999875433
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=2.9e-16 Score=163.26 Aligned_cols=188 Identities=19% Similarity=0.195 Sum_probs=108.1
Q ss_pred EecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccc
Q 008415 183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262 (566)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp 262 (566)
...+..+..+|. ...+++++++++|.+..++... ++|++|++++|.+..+| . ++++++|++|++++| .++.+|
T Consensus 97 ~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp 169 (454)
T 1jl5_A 97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLP 169 (454)
T ss_dssp ECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCC
T ss_pred EccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccC
Confidence 333444444443 2357777777777776665432 68888888888888887 3 788888999999888 887766
Q ss_pred ccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccc---c--ccccccCccchHhhhcC
Q 008415 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE---E--GNVLCEDAEPLMKELLG 337 (566)
Q Consensus 263 ~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~---~--~~~~~~~~~~~~~~l~~ 337 (566)
..+ .+|++|++++| .++.+|. ++.+++|++|++.+|........ + .++...... .+.+++.
T Consensus 170 ~~~----------~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~~~~ 235 (454)
T 1jl5_A 170 DLP----------PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPELQN 235 (454)
T ss_dssp CCC----------TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCCCTT
T ss_pred CCc----------ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccccCC
Confidence 432 36777777777 6777773 77777777777777665431000 0 000000000 1223566
Q ss_pred CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEecccc
Q 008415 338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNL 403 (566)
Q Consensus 338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 403 (566)
+++|+.|+++.+....++. ...+|+.|++++ +. ... ++. .+++|+.|++++|.+
T Consensus 236 l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~-N~-l~~--l~~--~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPD------LPPSLEALNVRD-NY-LTD--LPE--LPQSLTFLDVSENIF 289 (454)
T ss_dssp CTTCCEEECCSSCCSSCCS------CCTTCCEEECCS-SC-CSC--CCC--CCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCCcccc------cccccCEEECCC-Cc-ccc--cCc--ccCcCCEEECcCCcc
Confidence 6677777776543332221 124666666665 32 111 111 125666666666653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=4.5e-18 Score=168.66 Aligned_cols=265 Identities=16% Similarity=0.102 Sum_probs=193.5
Q ss_pred cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
..++++|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++| .++.+| ..
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~-----------~~ 98 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL-----------VG 98 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE-----------EC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc-----------CC
Confidence 358999999999988875 46889999999999998887665 788999999999999 887644 33
Q ss_pred ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415 276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ 355 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~ 355 (566)
++|++|++++| .++.+|.. .+++|++|++++|.+.. .....++.+++|+.|+++.+......
T Consensus 99 ~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~--------------~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 99 PSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp TTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCS--------------GGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCC--------------ccchhhhccCCCCEEECCCCCCCccc
Confidence 78999999999 78888764 47889999999988765 23445677888999888865433321
Q ss_pred ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcC
Q 008415 356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK 435 (566)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 435 (566)
. ......+.+|+.|++++ +. .. .......+++|+.|++++|.+..++.. ...+++|+.|+++++ .
T Consensus 161 ~-~~~~~~l~~L~~L~L~~-N~-l~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------~~~l~~L~~L~L~~N-~ 225 (317)
T 3o53_A 161 F-AELAASSDTLEHLNLQY-NF-IY--DVKGQVVFAKLKTLDLSSNKLAFMGPE---------FQSAAGVTWISLRNN-K 225 (317)
T ss_dssp G-GGGGGGTTTCCEEECTT-SC-CC--EEECCCCCTTCCEEECCSSCCCEECGG---------GGGGTTCSEEECTTS-C
T ss_pred H-HHHhhccCcCCEEECCC-Cc-Cc--ccccccccccCCEEECCCCcCCcchhh---------hcccCcccEEECcCC-c
Confidence 1 00112246899999987 42 22 224455689999999999996655422 246799999999996 5
Q ss_pred CCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEee
Q 008415 436 AKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDV 514 (566)
Q Consensus 436 l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i 514 (566)
+..+|. +..+++|+.|++++++...... +..+..+++|+.|.+.+++.++.........+.+....-
T Consensus 226 l~~l~~~~~~l~~L~~L~l~~N~~~~~~~------------~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~ 293 (317)
T 3o53_A 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293 (317)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCCBHHHH------------HHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETT
T ss_pred ccchhhHhhcCCCCCEEEccCCCccCcCH------------HHHHhccccceEEECCCchhccCCchhccCCCceecccc
Confidence 666654 7889999999999987652211 124667899999999988888776554455555555555
Q ss_pred cCCCCCC
Q 008415 515 CHCPQLK 521 (566)
Q Consensus 515 ~~C~~L~ 521 (566)
..|..+.
T Consensus 294 ~cc~~l~ 300 (317)
T 3o53_A 294 YCCEDLP 300 (317)
T ss_dssp EEEBCCT
T ss_pred eeeccCC
Confidence 5565554
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=2.3e-16 Score=164.04 Aligned_cols=263 Identities=18% Similarity=0.181 Sum_probs=149.5
Q ss_pred cCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc
Q 008415 185 AGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264 (566)
Q Consensus 185 ~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~ 264 (566)
.+..+..+|....+.+++++++.+|.+..+|.. ..+|++|++++|.+..+| . ++++++|++|++++| .++.+|..
T Consensus 139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N-~l~~l~~~ 213 (454)
T 1jl5_A 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNN-SLKKLPDL 213 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSSCCCC
T ss_pred cCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCC-cCCcCCCC
Confidence 333444445455555666666666666555433 246666666666666665 2 566777777777777 66655532
Q ss_pred ccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceE
Q 008415 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVL 344 (566)
Q Consensus 265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 344 (566)
..+|++|++++| .++.+|. ++.+++|++|++++|.... . +. .+++|+.|
T Consensus 214 ----------~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~------------l---~~---~~~~L~~L 262 (454)
T 1jl5_A 214 ----------PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT------------L---PD---LPPSLEAL 262 (454)
T ss_dssp ----------CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS------------C---CS---CCTTCCEE
T ss_pred ----------cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc------------c---cc---cccccCEE
Confidence 147888888888 7788885 8888899999998887653 1 11 23688888
Q ss_pred EEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCc
Q 008415 345 SWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRS 424 (566)
Q Consensus 345 ~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~ 424 (566)
+++.+....++.. ..+|+.|++++ +. ... +..+ .++|+.|++++|.+..++ ...++
T Consensus 263 ~l~~N~l~~l~~~------~~~L~~L~ls~-N~-l~~--l~~~--~~~L~~L~l~~N~l~~i~------------~~~~~ 318 (454)
T 1jl5_A 263 NVRDNYLTDLPEL------PQSLTFLDVSE-NI-FSG--LSEL--PPNLYYLNASSNEIRSLC------------DLPPS 318 (454)
T ss_dssp ECCSSCCSCCCCC------CTTCCEEECCS-SC-CSE--ESCC--CTTCCEEECCSSCCSEEC------------CCCTT
T ss_pred ECCCCcccccCcc------cCcCCEEECcC-Cc-cCc--ccCc--CCcCCEEECcCCcCCccc------------CCcCc
Confidence 8886644433322 26788888887 32 111 1112 268899999888854332 11258
Q ss_pred ccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc---cCC
Q 008415 425 LNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS---VYP 501 (566)
Q Consensus 425 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~---l~~ 501 (566)
|+.|+++++ .+..+|.. +++|++|++++|. ++.++ . .+++|+.|+++++. ++. +|.
T Consensus 319 L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~-l~~lp-------------~---~l~~L~~L~L~~N~-l~~l~~ip~ 377 (454)
T 1jl5_A 319 LEELNVSNN-KLIELPAL--PPRLERLIASFNH-LAEVP-------------E---LPQNLKQLHVEYNP-LREFPDIPE 377 (454)
T ss_dssp CCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCCC-------------C---CCTTCCEEECCSSC-CSSCCCCCT
T ss_pred CCEEECCCC-cccccccc--CCcCCEEECCCCc-ccccc-------------c---hhhhccEEECCCCC-CCcCCCChH
Confidence 888888875 45566543 5788888888774 33322 2 46788888888753 443 333
Q ss_pred CCCCC-------------CCccEEeecCCCCCCC---CCCCCcc
Q 008415 502 NPLPF-------------PKLKKIDVCHCPQLKK---LPLNSSS 529 (566)
Q Consensus 502 ~~~~~-------------p~L~~L~i~~C~~L~~---lP~~~~~ 529 (566)
....+ ++|+.|+++++ .++. +|..+..
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIPESVED 420 (454)
T ss_dssp TCCEEECCC-----------------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCC-cCCccccchhhHhh
Confidence 33333 78999999885 4654 5554433
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=154.18 Aligned_cols=198 Identities=19% Similarity=0.221 Sum_probs=140.3
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
..+.+++.++.+..+|... .++|+.|++++|.+..++...|+++++|++|++++| .++.+|..+ +.++++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~------~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI------FKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT------TSSCTTCC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh------hcCCCCCC
Confidence 5677888888888877532 368999999999888888766888999999999999 888777654 67889999
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|++++| .++.+|.+.+..+++|++|++.+|.+.. .....++.+++|+.|+++.+..
T Consensus 89 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~Ls~n~l-------- 145 (270)
T 2o6q_A 89 TLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKS--------------LPPRVFDSLTKLTYLSLGYNEL-------- 145 (270)
T ss_dssp EEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSSCC--------
T ss_pred EEECCCC-cCCcCCHhHcccccCCCEEECCCCccCe--------------eCHHHhCcCcCCCEEECCCCcC--------
Confidence 9999998 7888887657889999999999887754 2334456677777776663211
Q ss_pred CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415 360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439 (566)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 439 (566)
.......+..+++|+.|++++|.+..++.. ....+++|+.|+|+++ .+..+
T Consensus 146 --------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~ 196 (270)
T 2o6q_A 146 --------------------QSLPKGVFDKLTSLKELRLYNNQLKRVPEG--------AFDKLTELKTLKLDNN-QLKRV 196 (270)
T ss_dssp --------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSS-CCSCC
T ss_pred --------------------CccCHhHccCCcccceeEecCCcCcEeChh--------HhccCCCcCEEECCCC-cCCcC
Confidence 111111245667778888877774443321 1135677888888775 45555
Q ss_pred ch--hhccCCcceEeEeccc
Q 008415 440 TW--LVFVQNLKVLRIGDCY 457 (566)
Q Consensus 440 ~~--l~~l~~L~~L~L~~~~ 457 (566)
+. +..+++|+.|++++++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccccCCCEEEecCCC
Confidence 43 6667888888887765
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.3e-16 Score=157.22 Aligned_cols=193 Identities=19% Similarity=0.295 Sum_probs=140.7
Q ss_pred ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
...+.++++|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .++.+| .+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~--------~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--------AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG--------GGTT
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch--------hhcC
Confidence 33457888888888888888878888888888888888888776 788888888888888 787654 2678
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV 354 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~ 354 (566)
+++|++|++++| .++.+|. +..+++|++|++++|.+.. +..++.+++|+.|+++.+..
T Consensus 106 l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~l~~n~l--- 163 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITN----------------ISPLAGLTNLQYLSIGNAQV--- 163 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC----------------CGGGGGCTTCCEEECCSSCC---
T ss_pred CCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCc----------------CccccCCCCccEEEccCCcC---
Confidence 888888888888 7888876 8888888888888887654 11256666666666653211
Q ss_pred hccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415 355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR 434 (566)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 434 (566)
.. +..+..+++|+.|++++|.+..++ ....+++|+.|+++++
T Consensus 164 -------------------------~~--~~~l~~l~~L~~L~l~~n~l~~~~----------~l~~l~~L~~L~L~~N- 205 (308)
T 1h6u_A 164 -------------------------SD--LTPLANLSKLTTLKADDNKISDIS----------PLASLPNLIEVHLKNN- 205 (308)
T ss_dssp -------------------------CC--CGGGTTCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECTTS-
T ss_pred -------------------------CC--ChhhcCCCCCCEEECCCCccCcCh----------hhcCCCCCCEEEccCC-
Confidence 11 112556678888888887744332 1246778888888875
Q ss_pred CCCCCchhhccCCcceEeEecccC
Q 008415 435 KAKDLTWLVFVQNLKVLRIGDCYD 458 (566)
Q Consensus 435 ~l~~l~~l~~l~~L~~L~L~~~~~ 458 (566)
.+..++.+..+++|+.|++++++.
T Consensus 206 ~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 206 QISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred ccCccccccCCCCCCEEEccCCee
Confidence 566666678888888888887753
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=6.5e-16 Score=168.12 Aligned_cols=148 Identities=23% Similarity=0.199 Sum_probs=125.3
Q ss_pred EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+.+.+.++..+|..- ...+++|++++|.++.++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .++
T Consensus 36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 113 (635)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC
Confidence 445556677777422 258999999999999987 4789999999999999999999887999999999999999 999
Q ss_pred cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK 339 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 339 (566)
.+|... +++|++|++|++++| .++.+|...++++++|++|++++|.+... ..+..++.++
T Consensus 114 ~l~~~~------f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-------------~~~~~~~~l~ 173 (635)
T 4g8a_A 114 SLALGA------FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF-------------KLPEYFSNLT 173 (635)
T ss_dssp EECGGG------GTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC-------------CCCGGGGGCT
T ss_pred CCCHHH------hcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccC-------------CCchhhccch
Confidence 888654 799999999999999 89999986699999999999999987541 2456678899
Q ss_pred CCceEEEEEcCc
Q 008415 340 HLNVLSWTFRSS 351 (566)
Q Consensus 340 ~L~~L~i~~~~~ 351 (566)
+|+.|+++.+..
T Consensus 174 ~L~~L~L~~N~l 185 (635)
T 4g8a_A 174 NLEHLDLSSNKI 185 (635)
T ss_dssp TCCEEECCSSCC
T ss_pred hhhhhcccCccc
Confidence 999999986543
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.6e-16 Score=150.65 Aligned_cols=98 Identities=19% Similarity=0.298 Sum_probs=75.2
Q ss_pred cCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC-CccccccccccCcchhccccCcEecccC-
Q 008415 208 GNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS-LRKLPSGIRGLPQELKALEKLRYLNLDY- 285 (566)
Q Consensus 208 ~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~-i~~lp~~i~~LP~~i~~L~~L~~L~L~~- 285 (566)
..++..+|. -.++|++|++++|.+..+|...|+.+++|++|++++| . ++.+|... +.++++|++|++++
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~------f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHS------FYNLSKVTHIEIRNT 90 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTT------EESCTTCCEEEEEEE
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhH------cCCCcCCcEEECCCC
Confidence 334666665 3458888888888888888766888888999999888 6 77766533 67888888888888
Q ss_pred cccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 286 TRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 286 ~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
| .++.+|.+.+..+++|++|++.+|.+..
T Consensus 91 n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 91 R-NLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp T-TCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred C-CeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 5 7888886557888888888888876643
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=4.3e-16 Score=151.19 Aligned_cols=216 Identities=18% Similarity=0.147 Sum_probs=133.2
Q ss_pred EecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415 183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260 (566)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~ 260 (566)
.+.+..+..+|..- ..++++|++.+|.+..++ .+..+++|++|++++|.+..++...+.++++|++|++++| .++.
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCc
Confidence 33444444455311 246777777777777665 3566777777777777777766655777777777777777 7765
Q ss_pred ccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCC
Q 008415 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH 340 (566)
Q Consensus 261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 340 (566)
++.. .+.++++|++|++++| .+..++...++.+++|++|++++|.+... ..+..++++++
T Consensus 91 ~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~l~~~~~~l~~ 150 (276)
T 2z62_A 91 LALG------AFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF-------------KLPEYFSNLTN 150 (276)
T ss_dssp ECTT------TTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC-------------CCCGGGGGCTT
T ss_pred cChh------hhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCcccee-------------cCchhhccCCC
Confidence 5532 2677777777777777 66666653377777777777777765430 12445566666
Q ss_pred CceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcc----eEEEeccccceeeecccccccc
Q 008415 341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQ----KFELESCNLEEMKIDSTEEVKK 416 (566)
Q Consensus 341 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~l~~l~~~~~~~~~~ 416 (566)
|+.|+++.+.. .......+..+++|+ +|++++|.+..++...
T Consensus 151 L~~L~Ls~N~l----------------------------~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~------ 196 (276)
T 2z62_A 151 LEHLDLSSNKI----------------------------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA------ 196 (276)
T ss_dssp CCEEECCSSCC----------------------------CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS------
T ss_pred CCEEECCCCCC----------------------------CcCCHHHhhhhhhccccceeeecCCCcccccCccc------
Confidence 66666653211 111111233344444 7788887755443221
Q ss_pred cCccCCCcccEEecccCcCCCCCch--hhccCCcceEeEecccC
Q 008415 417 LFQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCYD 458 (566)
Q Consensus 417 ~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~ 458 (566)
....+|+.|+++++ .++.++. +..+++|+.|++++++.
T Consensus 197 ---~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 197 ---FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp ---SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ---cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 12347888888886 4666554 57788888888887653
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.8e-16 Score=153.54 Aligned_cols=111 Identities=25% Similarity=0.400 Sum_probs=87.4
Q ss_pred ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
...+.+++.+.+.++.+..++.+..+++|++|++++|.+..++ . ++.+++|++|++++| .++.+|... +++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n-~l~~~~~~~------~~~ 107 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGN-QLQSLPNGV------FDK 107 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTS-CCCCCCTTT------TTT
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCC-ccCccChhH------hcC
Confidence 3445688888888888888877888888888888888877765 3 788888888888888 887766543 678
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+++|++|++++| .++.+|...++.+++|++|++.+|.+..
T Consensus 108 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 108 LTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCc
Confidence 888888888888 7888877657888888888888886644
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=8.8e-16 Score=154.33 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=151.4
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC-ccccccccccCcchhccccCcE
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL-RKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i-~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
+.+..++++++.+|... .++++.|++++|+++.+|...|.++++|++|+|++| .+ +.+|... +.+|++|++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~------f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADV------FSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTS------BCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhH------hhcchhhhh
Confidence 45677778888887532 468899999999998888877888999999999998 65 4455443 678888776
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccC
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKY 360 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~ 360 (566)
+.+.++.+++.+|.+++..+++|++|++.+|.+... .........++..+.+.
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~~~l~~l~l~------------- 136 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL--------------PDVHKIHSLQKVLLDIQ------------- 136 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC--------------CCCTTCCBSSCEEEEEE-------------
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccC--------------Cchhhcccchhhhhhhc-------------
Confidence 544443378888776688899999999988876541 11111222233334433
Q ss_pred CcccccceEEEEecccCCCCCeeeeccccc-cCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415 361 PKLVSITQSVLVKSGVHTSPPFNVLHLAYM-ENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439 (566)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 439 (566)
. +.....+....+..+ ..++.|++++|.++.++... ....+|++|.+.+++.++.+
T Consensus 137 -------------~-~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~---------f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 137 -------------D-NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA---------FNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp -------------S-CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS---------STTEEEEEEECTTCTTCCCC
T ss_pred -------------c-ccccccccccchhhcchhhhhhccccccccCCChhh---------ccccchhHHhhccCCcccCC
Confidence 1 111111111122222 35667777777755543221 13456777777777777777
Q ss_pred ch--hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeec
Q 008415 440 TW--LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVC 515 (566)
Q Consensus 440 ~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~ 515 (566)
|. +..+++|++|+++++. ++.++ ...|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~-l~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTR-IHSLP---------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CTTTTTTEECCSEEECTTSC-CCCCC---------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred CHHHhccCcccchhhcCCCC-cCccC---------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 65 5677788888887763 44333 23466777777777777777763 4557777777764
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=8.9e-16 Score=148.40 Aligned_cols=195 Identities=19% Similarity=0.230 Sum_probs=149.4
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+...+..+..+|..- ...+++|++.+|.+..++ .+..+++|++|++++|.+..+|...|..+++|++|++++| .+
T Consensus 20 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l 97 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KL 97 (270)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CC
T ss_pred EEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cC
Confidence 4556666667666422 368999999999999887 4788999999999999999999887899999999999999 99
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.+|... +.++++|++|++++| .++.+|...++.+++|++|++++|.+.. .....++.+
T Consensus 98 ~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~l 156 (270)
T 2o6q_A 98 QALPIGV------FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQS--------------LPKGVFDKL 156 (270)
T ss_dssp CCCCTTT------TTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred CcCCHhH------cccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCc--------------cCHhHccCC
Confidence 8887654 789999999999999 8999988768999999999999998765 233346777
Q ss_pred CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415 339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF 418 (566)
Q Consensus 339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 418 (566)
++|+.|+++.+.. .......+..+++|+.|++++|.+..++.. .
T Consensus 157 ~~L~~L~L~~n~l----------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~ 200 (270)
T 2o6q_A 157 TSLKELRLYNNQL----------------------------KRVPEGAFDKLTELKTLKLDNNQLKRVPEG--------A 200 (270)
T ss_dssp TTCCEEECCSSCC----------------------------SCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------T
T ss_pred cccceeEecCCcC----------------------------cEeChhHhccCCCcCEEECCCCcCCcCCHH--------H
Confidence 8888777763321 111111355677888888888875544321 1
Q ss_pred ccCCCcccEEecccCc
Q 008415 419 QSGFRSLNTVSVHYCR 434 (566)
Q Consensus 419 ~~~l~~L~~L~L~~c~ 434 (566)
...+++|+.|+|++++
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccccCCCEEEecCCC
Confidence 2357888888888764
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.5e-17 Score=161.87 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=44.4
Q ss_pred CCCccEEEecCCccc-ccchHHH-hcCccCCEEecCCCCCCccccccccccCcchhcc-----ccCcEecccCcccCCcc
Q 008415 220 CPRLVTLLLGGNRIE-EITDGFF-QSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL-----EKLRYLNLDYTRFLSII 292 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~-~lp~~~~-~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L-----~~L~~L~L~~~~~l~~l 292 (566)
+++|++|++++|.+. .+|..++ +.+++|++|+|++| .++.+|.. ++.+ ++|++|++++| .++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~l~~~~~~~L~~L~L~~N-~l~~~ 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAW-------LAELQQWLKPGLKVLSIAQA-HSLNF 164 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSH-------HHHHHTTCCTTCCEEEEESC-SCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHH-------HHHHHHhhcCCCcEEEeeCC-CCccc
Confidence 555556666555554 3444321 55555666666555 55443322 2433 55566666555 45555
Q ss_pred chhhhcCCCCCcEEEecCCCC
Q 008415 293 PHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 293 P~~~i~~L~~L~~L~l~~~~~ 313 (566)
|...++++++|++|++++|..
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTT
T ss_pred hHHHhccCCCCCEEECCCCCc
Confidence 533355555666666655544
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=3.5e-16 Score=148.33 Aligned_cols=205 Identities=15% Similarity=0.207 Sum_probs=145.5
Q ss_pred cccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCc-ccccchHHHhcCccCCEEecCC-CCCCcccccc
Q 008415 189 LTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRI-NISLRKLPSG 264 (566)
Q Consensus 189 ~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~-l~~lp~~~~~~l~~Lr~L~L~~-~~~i~~lp~~ 264 (566)
+..+|. -..++++|++.+|.+..++. +..+++|++|++++|. +..++...|.++++|++|++++ | .++.+|..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence 566666 34589999999999999875 6789999999999996 9999886689999999999998 8 89887754
Q ss_pred ccccCcchhccccCcEecccCcccCCccchhhhcCCCCCc---EEEecCC-CCcccccccccccccCccchHhhhcCCCC
Q 008415 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLE---VLRLFGC-GFWVVTEEEGNVLCEDAEPLMKELLGSKH 340 (566)
Q Consensus 265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 340 (566)
. +.++++|++|++++| .++.+|. ++.+++|+ +|++++| .+.. .....+..+++
T Consensus 100 ~------f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~--------------i~~~~~~~l~~ 156 (239)
T 2xwt_C 100 A------LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTS--------------IPVNAFQGLCN 156 (239)
T ss_dssp S------EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCE--------------ECTTTTTTTBS
T ss_pred H------hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchhh--------------cCcccccchhc
Confidence 3 789999999999999 7999997 88899998 9999998 6543 22334667777
Q ss_pred Cc-eEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccC
Q 008415 341 LN-VLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLF 418 (566)
Q Consensus 341 L~-~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~ 418 (566)
|+ .|+++.+....++. ..+.. ++|+.|++++|. +..++.+.
T Consensus 157 L~~~L~l~~n~l~~i~~----------------------------~~~~~-~~L~~L~L~~n~~l~~i~~~~-------- 199 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQG----------------------------YAFNG-TKLDAVYLNKNKYLTVIDKDA-------- 199 (239)
T ss_dssp SEEEEECCSCCCCEECT----------------------------TTTTT-CEEEEEECTTCTTCCEECTTT--------
T ss_pred ceeEEEcCCCCCcccCH----------------------------hhcCC-CCCCEEEcCCCCCcccCCHHH--------
Confidence 77 77776432211110 11222 466666666664 55443221
Q ss_pred ccCC-CcccEEecccCcCCCCCchhhccCCcceEeEecccC
Q 008415 419 QSGF-RSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYD 458 (566)
Q Consensus 419 ~~~l-~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~ 458 (566)
...+ ++|+.|+++++ .++.+|.- .+++|+.|++.++..
T Consensus 200 ~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred hhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence 1234 66777777663 45555443 566777777766543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=7.3e-16 Score=161.77 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=160.6
Q ss_pred CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI 297 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i 297 (566)
..+++|++|++++|.+..+++..|+.+++|++|+|++| .++.+++ ++.+++|++|++++| .++.+|.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l~~--- 97 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--------LESLSTLRTLDLNNN-YVQELLV--- 97 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--------CTTCTTCCEEECCSS-EEEEEEE---
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--------cccCCCCCEEEecCC-cCCCCCC---
Confidence 45669999999999999887666999999999999999 8876543 689999999999999 7888775
Q ss_pred cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415 298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH 377 (566)
Q Consensus 298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (566)
.++|++|++++|.+... .. ..+++|+.|+++.+....... .....+++|+.|++++ +
T Consensus 98 --~~~L~~L~L~~N~l~~~--------------~~---~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~-N- 154 (487)
T 3oja_A 98 --GPSIETLHAANNNISRV--------------SC---SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKL-N- 154 (487)
T ss_dssp --CTTCCEEECCSSCCCCE--------------EE---CCCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTT-S-
T ss_pred --CCCcCEEECcCCcCCCC--------------Cc---cccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCC-C-
Confidence 38999999999987651 11 245778888888654433211 1223346788888876 2
Q ss_pred CCCCeeeeccc-cccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC-chhhccCCcceEeEec
Q 008415 378 TSPPFNVLHLA-YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL-TWLVFVQNLKVLRIGD 455 (566)
Q Consensus 378 ~~~~~~~~~l~-~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~ 455 (566)
.........+. .+++|+.|++++|.+..++ +...+++|+.|+|+++ .+..+ +.++.+++|+.|++++
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTT
T ss_pred CCCCcChHHHhhhCCcccEEecCCCcccccc----------ccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecC
Confidence 22222222343 5678888888887754432 1124678888888775 44444 4477788888888877
Q ss_pred ccCcccccccccccccccccCCCCccccccceeeccccccc-cccCCCCCCCCCccEEeec
Q 008415 456 CYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL-KSVYPNPLPFPKLKKIDVC 515 (566)
Q Consensus 456 ~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L-~~l~~~~~~~p~L~~L~i~ 515 (566)
|... .+ |..+..+++|+.|++.+++-. ..++.....++.|+.+.+.
T Consensus 224 N~l~-~l-------------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLV-LI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCC-EE-------------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCc-cc-------------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6432 22 235666778888888775532 1222223456667666664
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.1e-15 Score=149.17 Aligned_cols=199 Identities=18% Similarity=0.070 Sum_probs=143.2
Q ss_pred ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.+.+++.+.+.++.+..+|... .+++++|++++|.+..++...|..+++|++|+|++| .++.+|. .+.++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~l~ 77 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--------DGTLP 77 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--------CSCCT
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--------CCCCC
Confidence 3467888999998888887533 378999999999988887666899999999999999 8887664 26888
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN 356 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~ 356 (566)
+|++|++++| .++.+|.. +..+++|++|++++|.+.. .....+..+++|+.|+++.+...
T Consensus 78 ~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~--------------l~~~~~~~l~~L~~L~L~~N~l~---- 137 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS--------------LPLGALRGLGELQELYLKGNELK---- 137 (290)
T ss_dssp TCCEEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC--------------CCSSTTTTCTTCCEEECTTSCCC----
T ss_pred cCCEEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcc--------------cCHHHHcCCCCCCEEECCCCCCC----
Confidence 9999999999 89999986 8899999999999988765 23345667777777776632211
Q ss_pred cccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCC
Q 008415 357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKA 436 (566)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 436 (566)
......+..+++|+.|++++|.+..++.+. ...+++|+.|+|+++ .+
T Consensus 138 ------------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--------~~~l~~L~~L~L~~N-~l 184 (290)
T 1p9a_G 138 ------------------------TLPPGLLTPTPKLEKLSLANNNLTELPAGL--------LNGLENLDTLLLQEN-SL 184 (290)
T ss_dssp ------------------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTT--------TTTCTTCCEEECCSS-CC
T ss_pred ------------------------ccChhhcccccCCCEEECCCCcCCccCHHH--------hcCcCCCCEEECCCC-cC
Confidence 111112455677777877777755443221 134677888888774 45
Q ss_pred CCCch-hhccCCcceEeEecccC
Q 008415 437 KDLTW-LVFVQNLKVLRIGDCYD 458 (566)
Q Consensus 437 ~~l~~-l~~l~~L~~L~L~~~~~ 458 (566)
..+|. +...++|+.|.+.+++.
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCCB
T ss_pred CccChhhcccccCCeEEeCCCCc
Confidence 56554 66667788888876653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.4e-15 Score=147.62 Aligned_cols=121 Identities=19% Similarity=0.115 Sum_probs=91.1
Q ss_pred EEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecc
Q 008415 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNL 283 (566)
Q Consensus 204 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L 283 (566)
+...+..+..+|... .++|++|++++|.+..++...+.++++|++|++++| .++.+|.. .++++++|++|++
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~L 83 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG------AYQSLSHLSTLIL 83 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTT------TTTTCTTCCEEEC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHH------HccCCcCCCEEEC
Confidence 344445566666422 367999999999998888755889999999999999 88876653 3788999999999
Q ss_pred cCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
++| .++.++.+.+.++++|++|++.+|.... .....++.+++|+.|+++
T Consensus 84 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 84 TGN-PIQSLALGAFSGLSSLQKLVAVETNLAS--------------LENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TTC-CCCEECTTTTTTCTTCCEEECTTSCCCC--------------STTCCCTTCTTCCEEECC
T ss_pred CCC-ccCccChhhhcCCccccEEECCCCCccc--------------cCchhcccCCCCCEEECc
Confidence 999 7888876558999999999999887754 122235566666666665
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=8.4e-16 Score=148.72 Aligned_cols=144 Identities=22% Similarity=0.361 Sum_probs=120.7
Q ss_pred EEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l 261 (566)
+...+..+..++....+.++++|++.+|.+..++.+..+++|++|++++|.+..++...++++++|++|++++| .++.+
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 124 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCcc
Confidence 44555566667777788999999999999999888899999999999999999998887899999999999999 99887
Q ss_pred cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL 341 (566)
Q Consensus 262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 341 (566)
|... ++++++|++|++++| .++.+|...++.+++|++|++++|.+.. .....++.+++|
T Consensus 125 ~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L 183 (272)
T 3rfs_A 125 PDGV------FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS--------------LPEGVFDKLTQL 183 (272)
T ss_dssp CTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTCTTC
T ss_pred CHHH------hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc--------------cCHHHhcCCccC
Confidence 7654 789999999999999 8999998767899999999999997754 223335566666
Q ss_pred ceEEEE
Q 008415 342 NVLSWT 347 (566)
Q Consensus 342 ~~L~i~ 347 (566)
+.|+++
T Consensus 184 ~~L~L~ 189 (272)
T 3rfs_A 184 KDLRLY 189 (272)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 666665
No 76
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.64 E-value=1e-16 Score=170.64 Aligned_cols=146 Identities=8% Similarity=-0.009 Sum_probs=105.1
Q ss_pred ecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHH
Q 008415 7 TFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKL 81 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l 81 (566)
+.+...-.+++|++|.++|+.... .+++++++++|+++| |+|+ +|+.++.+ .|+.+ +.+
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~-----------~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l 351 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPV-----------GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQL 351 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC-------------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHH
T ss_pred EECCCCCHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHh
Confidence 334443458999999999875321 135577888999999 8884 45655433 36554 556
Q ss_pred HHhhH-----------HHhhhchHHHHHHHhcc-----------cccCccccCCC-CChHHHHHHHHhc--CCCcccc-c
Q 008415 82 ETEYT-----------ELERDRAQEMDRLCLGG-----------LCSKNFVSNSE-IPKRQLIDYWISE--GFVCDFD-D 135 (566)
Q Consensus 82 ~~~~~-----------~~~~~~L~~~lK~Cf~l-----------yc~~~~~~Fp~-i~~~~Li~~wiae--gfi~~~~-~ 135 (566)
.+.++ .++|++||.++|.|| + || |+||+ ...+ ++.|+|+ ||+.... +
T Consensus 352 ~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f-~~Ls~~er~l~~~l----s~fp~~~~i~--i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 352 NNKLESRGLVGVECITPYSYKSLAMALQRCV-EVLSDEDRSALAFA----VVMPPGVDIP--VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHHCSSTTCCCSSSSSSSHHHHHHHHH-HTSCHHHHHHTTGG----GSSCTTCCEE--HHHHHHHSCC-------C
T ss_pred HHHhhcccHHHHHHHHhcccccccHHHHHHH-hccchhhhhHhhhe----eeeCCCCeee--eeeeeeeccceeccCCCC
Confidence 66544 356778999999999 9 99 99999 4444 8999999 9998765 1
Q ss_pred -----HhHHHHHHHHccccccc---CCcceecchhHHHHHHHHhcccC
Q 008415 136 -----GCDFIDDLLQACLLEEE---GDDHVKMHDMIREMSLWIACTVD 175 (566)
Q Consensus 136 -----~~~~~~~L~~r~ll~~~---~~~~~~mHdli~dl~~~i~~~e~ 175 (566)
+.+||++|++|||++.. ...+|+|||+|||+|++++++++
T Consensus 425 ~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 425 QLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 34499999999999986 34579999999999999998765
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.2e-15 Score=160.08 Aligned_cols=239 Identities=16% Similarity=0.093 Sum_probs=180.3
Q ss_pred cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
..++++|++++|.+..++ .+..+++|++|++++|.+...++ ++.+++|++|+|++| .++.+|. .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~-----------~ 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV-----------G 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE-----------C
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC-----------C
Confidence 358999999999998875 47899999999999999887665 889999999999999 8876552 3
Q ss_pred ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415 276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ 355 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~ 355 (566)
++|++|++++| .+..+|.. .+++|++|++++|.+.. ..+..++.+++|+.|+++.+......
T Consensus 99 ~~L~~L~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 99 PSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp TTCCEEECCSS-CCCCEEEC---CCSSCEEEECCSSCCCS--------------GGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCEEECcCC-cCCCCCcc---ccCCCCEEECCCCCCCC--------------CCchhhcCCCCCCEEECCCCCCCCcC
Confidence 79999999999 78888763 57899999999998865 34556778889999999866443311
Q ss_pred ccccCC-cccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415 356 NFLKYP-KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR 434 (566)
Q Consensus 356 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 434 (566)
+... ..+++|+.|++++ +. . ...+....+++|+.|++++|.+..++.. ...+++|+.|+|+++
T Consensus 161 --~~~l~~~l~~L~~L~Ls~-N~-l--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~~l~~L~~L~Ls~N- 224 (487)
T 3oja_A 161 --FAELAASSDTLEHLNLQY-NF-I--YDVKGQVVFAKLKTLDLSSNKLAFMGPE---------FQSAAGVTWISLRNN- 224 (487)
T ss_dssp --GGGGGGGTTTCCEEECTT-SC-C--CEEECCCCCTTCCEEECCSSCCCEECGG---------GGGGTTCSEEECTTS-
T ss_pred --hHHHhhhCCcccEEecCC-Cc-c--ccccccccCCCCCEEECCCCCCCCCCHh---------HcCCCCccEEEecCC-
Confidence 1111 1347899999997 42 2 2234455689999999999996655422 246799999999996
Q ss_pred CCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccc
Q 008415 435 KAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL 496 (566)
Q Consensus 435 ~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L 496 (566)
.+..+|. ++.+++|+.|++++|+..... +|..+..+++|+.|.+..+..+
T Consensus 225 ~l~~lp~~l~~l~~L~~L~l~~N~l~c~~------------~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGT------------LRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCBCHHH------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcccchhhccCCCCCEEEcCCCCCcCcc------------hHHHHHhCCCCcEEeccccccc
Confidence 5556654 788999999999998765221 1124567888888888655443
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.6e-15 Score=150.94 Aligned_cols=239 Identities=12% Similarity=0.055 Sum_probs=176.0
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcc-cccchHHHhcCccCCE-EecCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRI-EEITDGFFQSMSTLRV-LSLRINI 256 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l-~~lp~~~~~~l~~Lr~-L~L~~~~ 256 (566)
.+.+.+.+++++|..- ..++++|.+++|.++.++. +..+++|++|++++|.+ ..+|...|.++++|+. +.+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N- 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence 4556666777777522 3689999999999999984 68899999999999987 4577777889988775 566677
Q ss_pred CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhc
Q 008415 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELL 336 (566)
Q Consensus 257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (566)
.++.+|... +..+++|++|++++| .++.+|...+....++..|++.++..... .....+.
T Consensus 91 ~l~~l~~~~------f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-------------l~~~~f~ 150 (350)
T 4ay9_X 91 NLLYINPEA------FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT-------------IERNSFV 150 (350)
T ss_dssp TCCEECTTS------BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE-------------ECTTSST
T ss_pred cccccCchh------hhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc-------------ccccchh
Confidence 898887544 799999999999999 89999875466677888898876543320 1122334
Q ss_pred CC-CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccccc
Q 008415 337 GS-KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVK 415 (566)
Q Consensus 337 ~L-~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~ 415 (566)
.+ ..++.|+++.+....+ ........+++.|.+.+ +.....+....+..+++|+.|++++|.++.+|.
T Consensus 151 ~~~~~l~~L~L~~N~i~~i---~~~~f~~~~L~~l~l~~-~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~------- 219 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEI---HNSAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISRTRIHSLPS------- 219 (350)
T ss_dssp TSBSSCEEEECCSSCCCEE---CTTSSTTEEEEEEECTT-CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-------
T ss_pred hcchhhhhhccccccccCC---ChhhccccchhHHhhcc-CCcccCCCHHHhccCcccchhhcCCCCcCccCh-------
Confidence 44 3577788776544333 22222235678888876 444444444457888999999999988665432
Q ss_pred ccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecc
Q 008415 416 KLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDC 456 (566)
Q Consensus 416 ~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~ 456 (566)
..|.+|++|.+.++..++.+|.+..+++|+.+++.+.
T Consensus 220 ----~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 220 ----YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp ----SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ----hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 3578999999999999999999999999999998643
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=1.7e-14 Score=142.21 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=138.6
Q ss_pred EEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l 261 (566)
+...+..+..++....+.++++|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .++.+
T Consensus 46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~ 122 (308)
T 1h6u_A 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QITDV 122 (308)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-CCCCC
T ss_pred EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-CCCCc
Confidence 455555666677777789999999999999998889999999999999999988863 899999999999999 89876
Q ss_pred cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL 341 (566)
Q Consensus 262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 341 (566)
|. ++.+++|++|++++| .++.+|. ++.+++|++|++++|.+.. +..+..+++|
T Consensus 123 ~~--------l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L 175 (308)
T 1h6u_A 123 TP--------LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD----------------LTPLANLSKL 175 (308)
T ss_dssp GG--------GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGGGTTCTTC
T ss_pred hh--------hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC----------------ChhhcCCCCC
Confidence 53 689999999999999 8999988 9999999999999998754 1227888899
Q ss_pred ceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc
Q 008415 342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN 402 (566)
Q Consensus 342 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 402 (566)
+.|+++.+....+.. ...+.+|+.|++++ +. .. ....+..+++|+.|++++|.
T Consensus 176 ~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~-N~-l~--~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNKISDISP----LASLPNLIEVHLKN-NQ-IS--DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSCCCCCGG----GGGCTTCCEEECTT-SC-CC--BCGGGTTCTTCCEEEEEEEE
T ss_pred CEEECCCCccCcChh----hcCCCCCCEEEccC-Cc-cC--ccccccCCCCCCEEEccCCe
Confidence 988888654333222 12234555555554 21 11 11234555555666655555
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.1e-14 Score=142.05 Aligned_cols=198 Identities=17% Similarity=0.097 Sum_probs=141.7
Q ss_pred CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415 217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296 (566)
Q Consensus 217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~ 296 (566)
...+++++++++.++.+..+|..+ .+.|++|+|++| .++.++.. .+.++++|++|++++| .++.+|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~-- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLA------TLMPYTRLTQLNLDRA-ELTKLQV-- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGG------GGTTCTTCCEEECTTS-CCCEEEC--
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHH------HhhcCCCCCEEECCCC-ccCcccC--
Confidence 356778899999998888888763 368899999999 88766543 3788899999999998 7888887
Q ss_pred hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEeccc
Q 008415 297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGV 376 (566)
Q Consensus 297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (566)
.+.+++|++|++++|.+.. .+..+..+++|+.|+++.+.
T Consensus 73 ~~~l~~L~~L~Ls~N~l~~---------------l~~~~~~l~~L~~L~l~~N~-------------------------- 111 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQS---------------LPLLGQTLPALTVLDVSFNR-------------------------- 111 (290)
T ss_dssp CSCCTTCCEEECCSSCCSS---------------CCCCTTTCTTCCEEECCSSC--------------------------
T ss_pred CCCCCcCCEEECCCCcCCc---------------CchhhccCCCCCEEECCCCc--------------------------
Confidence 5788999999998887654 23345566666666665321
Q ss_pred CCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch--hhccCCcceEeEe
Q 008415 377 HTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIG 454 (566)
Q Consensus 377 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~ 454 (566)
........+..+++|+.|++++|.+..++... ...+++|+.|+|+++ .++.++. +..+++|++|+++
T Consensus 112 --l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 112 --LTSLPLGALRGLGELQELYLKGNELKTLPPGL--------LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp --CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred --CcccCHHHHcCCCCCCEEECCCCCCCccChhh--------cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECC
Confidence 11111224667889999999998855543221 135789999999885 5777765 5778999999998
Q ss_pred cccCcccccccccccccccccCCCCccccccceeecccc
Q 008415 455 DCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493 (566)
Q Consensus 455 ~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~ 493 (566)
++.. +.+ |..+...++|+.|.|.+.
T Consensus 181 ~N~l-~~i-------------p~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 181 ENSL-YTI-------------PKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp SSCC-CCC-------------CTTTTTTCCCSEEECCSC
T ss_pred CCcC-Ccc-------------ChhhcccccCCeEEeCCC
Confidence 8753 333 335566778888888753
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=6.2e-16 Score=154.53 Aligned_cols=246 Identities=16% Similarity=0.173 Sum_probs=127.7
Q ss_pred ccEEEeecCCcccccCCCCC--CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 201 AKRVSLMGNGIRSLSEIPTC--PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 201 lr~Lsl~~~~~~~l~~~~~~--~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
.+++++.++.+.. .....+ ++++.|++.++.+...+.. +..+++|++|++++| .+.. ..+|..+.++++|
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~-----~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEV-----STLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECH-----HHHHHHHTTBCCC
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCH-----HHHHHHHhhCCCC
Confidence 4556665554431 111222 5566666666655544444 445666666666666 4432 1133334566666
Q ss_pred cEecccCcccCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcc
Q 008415 279 RYLNLDYTRFLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNF 357 (566)
Q Consensus 279 ~~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~ 357 (566)
++|++++| .++ ..|.. ++++++|++|++.+|.... .......++++++|+.|+++
T Consensus 121 ~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~------------~~~l~~~~~~~~~L~~L~l~---------- 176 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFS------------EFALQTLLSSCSRLDELNLS---------- 176 (336)
T ss_dssp SEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCC------------HHHHHHHHHHCTTCCEEECC----------
T ss_pred CEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCCC------------HHHHHHHHhcCCCCCEEcCC----------
Confidence 66666666 444 23443 5666666666666662211 11122334455555555554
Q ss_pred ccCCcccccceEEEEecccCCCCCeeee-cccccc-CcceEEEeccc--c--ceeeecccccccccCccCCCcccEEecc
Q 008415 358 LKYPKLVSITQSVLVKSGVHTSPPFNVL-HLAYME-NLQKFELESCN--L--EEMKIDSTEEVKKLFQSGFRSLNTVSVH 431 (566)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~-~L~~L~l~~~~--l--~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 431 (566)
+ |.......+. .+..++ +|++|++++|. + ..++ .....+++|+.|+++
T Consensus 177 ----------------~-~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---------~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 177 ----------------W-CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---------TLVRRCPNLVHLDLS 230 (336)
T ss_dssp ----------------C-CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---------HHHHHCTTCSEEECT
T ss_pred ----------------C-CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---------HHHhhCCCCCEEeCC
Confidence 3 2111111111 245566 78888887773 2 1111 011356788888888
Q ss_pred cCcCCCC--CchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCC-CCCC-C
Q 008415 432 YCRKAKD--LTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN-PLPF-P 507 (566)
Q Consensus 432 ~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~-~~~~-p 507 (566)
+|..+.+ ++.++.+++|++|++++|..+....- ..+..+++|+.|++.+| ++.. ...+ .
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~ 293 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI-----VPDGTLQLLKE 293 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS-----SCTTCHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc-----cCHHHHHHHHh
Confidence 8764443 44577788888888888863322110 13456788888888877 2221 1111 2
Q ss_pred CccEEeecCCCCCCC
Q 008415 508 KLKKIDVCHCPQLKK 522 (566)
Q Consensus 508 ~L~~L~i~~C~~L~~ 522 (566)
+|+.|++ +|++++.
T Consensus 294 ~l~~L~l-~~n~l~~ 307 (336)
T 2ast_B 294 ALPHLQI-NCSHFTT 307 (336)
T ss_dssp HSTTSEE-SCCCSCC
T ss_pred hCcceEE-ecccCcc
Confidence 3445555 4566776
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=2.2e-16 Score=156.07 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=66.6
Q ss_pred ccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC-C--chhhccCCcceEeEecccCcccccc
Q 008415 388 AYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-L--TWLVFVQNLKVLRIGDCYDMEEIIS 464 (566)
Q Consensus 388 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l--~~l~~l~~L~~L~L~~~~~l~~i~~ 464 (566)
..+++|++|++++|.+..++.-. . .....+++|+.|+++++. +.. . +.+..+++|++|++++|.. +.++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~----~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip- 269 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVC----S-ALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGL-KQVP- 269 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHH----H-HHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCC-SSCC-
T ss_pred ccCCCCCEEECCCCcCcchHHHH----H-HHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCcc-Chhh-
Confidence 56678888888877744221000 0 001245788888888753 443 2 2355578888888887753 3332
Q ss_pred cccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCC
Q 008415 465 VDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHC 517 (566)
Q Consensus 465 ~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C 517 (566)
..+. ++|+.|++++. .++.++. ...+++|++|++.+.
T Consensus 270 ------------~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 270 ------------KGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ------------SSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred ------------hhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 2332 78888888875 5777765 667888888888874
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.2e-14 Score=136.95 Aligned_cols=107 Identities=24% Similarity=0.347 Sum_probs=82.1
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
..+++++.++.+..+|... .++|+.|++++|.+..++...++++++|++|+|++| .++.++... +.++++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV------FDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT------TTTCTTCC
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhH------hccCCcCC
Confidence 4567777777777777532 268888888888888777666788888888888888 887665433 67888888
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+|++++| .++.+|...+..+++|++|++++|.+..
T Consensus 87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 121 (251)
T 3m19_A 87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKS 121 (251)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCC
Confidence 8888888 7888886657888888888888876654
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.3e-14 Score=141.59 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI 297 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i 297 (566)
..+++|+.|++++|.+..++. +..+++|++|++++| .++.+|. ++++++|++|++++| .++.+|. +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--------l~~l~~L~~L~l~~n-~l~~~~~--l 108 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--------LANLKNLGWLFLDEN-KVKDLSS--L 108 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--------GTTCTTCCEEECCSS-CCCCGGG--G
T ss_pred hhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc--------cccCCCCCEEECCCC-cCCCChh--h
Confidence 344455555555555544432 445555555555555 5544332 345555555555555 4555444 5
Q ss_pred cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415 298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH 377 (566)
Q Consensus 298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (566)
+.+++|++|++++|.+.. +..+..+++|+.|+++.+..
T Consensus 109 ~~l~~L~~L~L~~n~i~~----------------~~~l~~l~~L~~L~l~~n~l-------------------------- 146 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKI-------------------------- 146 (291)
T ss_dssp TTCTTCCEEECTTSCCCC----------------CGGGGGCTTCCEEECCSSCC--------------------------
T ss_pred ccCCCCCEEECCCCcCCC----------------ChhhcCCCCCCEEEccCCcC--------------------------
Confidence 555555555555554432 12333444444444432110
Q ss_pred CCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEeccc
Q 008415 378 TSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCY 457 (566)
Q Consensus 378 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 457 (566)
.. +..+..+++|+.|++++|.+..++ +...+++|+.|+++++ .+.+++.+..+++|+.|++++++
T Consensus 147 --~~--~~~l~~l~~L~~L~L~~N~l~~~~----------~l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 --TD--ITVLSRLTKLDTLSLEDNQISDIV----------PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --CC--CGGGGGCTTCSEEECCSSCCCCCG----------GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred --Cc--chhhccCCCCCEEEccCCccccch----------hhcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 00 012344556666666665533221 1235666777777664 45566666777777777777664
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.7e-14 Score=140.85 Aligned_cols=171 Identities=25% Similarity=0.268 Sum_probs=128.5
Q ss_pred CccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 194 KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 194 ~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
....+.+++.+++.++.+..++.+..+++|++|++++|.+..++. +.++++|++|++++| .++.+|. ++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--------l~ 109 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS--------LK 109 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG--------GT
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh--------hc
Confidence 344567899999999999999888999999999999999998876 899999999999999 8877553 68
Q ss_pred ccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccc
Q 008415 274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG 353 (566)
Q Consensus 274 ~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~ 353 (566)
++++|++|++++| .++.++. +..+++|++|++++|.+.. +..++.+++|+.|+++.+....
T Consensus 110 ~l~~L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------ITVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp TCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGGGGGCTTCSEEECCSSCCCC
T ss_pred cCCCCCEEECCCC-cCCCChh--hcCCCCCCEEEccCCcCCc----------------chhhccCCCCCEEEccCCcccc
Confidence 9999999999999 8999875 9999999999999998754 2567788888888887554333
Q ss_pred hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc
Q 008415 354 VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN 402 (566)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 402 (566)
... ...+++|+.|++++ +. ... +..+..+++|+.|++++|.
T Consensus 171 ~~~----l~~l~~L~~L~L~~-N~-i~~--l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 IVP----LAGLTKLQNLYLSK-NH-ISD--LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG----GTTCTTCCEEECCS-SC-CCB--CGGGTTCTTCSEEEEEEEE
T ss_pred chh----hcCCCccCEEECCC-Cc-CCC--ChhhccCCCCCEEECcCCc
Confidence 222 22234555555554 21 111 2234455555555555554
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=4.3e-14 Score=134.90 Aligned_cols=145 Identities=24% Similarity=0.302 Sum_probs=118.7
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+...+..+..+|..- ...++.|.+.+|.+..++ .+..+++|++|++++|.+..++...+..+++|++|++++| .+
T Consensus 18 ~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 95 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QL 95 (251)
T ss_dssp EEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred EEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence 3556666677776432 268999999999998876 3688999999999999999888877899999999999999 99
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.+|... ++.+++|++|++++| .++.+|.+.+..+++|++|++++|.+.. .....++.+
T Consensus 96 ~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l 154 (251)
T 3m19_A 96 ASLPLGV------FDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS--------------IPAGAFDKL 154 (251)
T ss_dssp CCCCTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred cccChhH------hcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc--------------cCHHHcCcC
Confidence 8887654 789999999999999 8999998767899999999999997754 223346666
Q ss_pred CCCceEEEEE
Q 008415 339 KHLNVLSWTF 348 (566)
Q Consensus 339 ~~L~~L~i~~ 348 (566)
++|+.|+++.
T Consensus 155 ~~L~~L~L~~ 164 (251)
T 3m19_A 155 TNLQTLSLST 164 (251)
T ss_dssp TTCCEEECCS
T ss_pred cCCCEEECCC
Confidence 7677666663
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=147.46 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=65.8
Q ss_pred cccEEEeecCCccc-----ccCCCCCCCccEEEecCCcccc-cchHHH--hcCccCCEEecCCCCCCccccccccccCcc
Q 008415 200 GAKRVSLMGNGIRS-----LSEIPTCPRLVTLLLGGNRIEE-ITDGFF--QSMSTLRVLSLRINISLRKLPSGIRGLPQE 271 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~-----l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~--~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~ 271 (566)
.++++.+....+.. +.....+++|+.|++++|.+.. .|.. + +.+++|++|++++| .+......+ -...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~--~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWL--AELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSH--HHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecc-cccchhhhh--HHHH
Confidence 45666666554432 1122334557777777776653 3433 4 67777777777777 665321110 0022
Q ss_pred hhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 272 i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
+..+++|++|++++| .+..+|...++.+++|++|++++|...
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc
Confidence 356777777777777 666666544777777777777777653
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=4.8e-15 Score=148.05 Aligned_cols=202 Identities=19% Similarity=0.125 Sum_probs=133.3
Q ss_pred ccccEEEeecCCcccc-cCCCCCCCccEEEecCCcccc--cchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 199 EGAKRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEE--ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l-~~~~~~~~Lr~L~l~~~~l~~--lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
..++.+.+.++.+... +....+++|++|++++|.+.. ++.. +..+++|++|++++| .++. ..|..++++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~-~l~~------~~~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGL-RLSD------PIVNTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTC-BCCH------HHHHHHTTC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCc-ccCH------HHHHHHhcC
Confidence 5788888888877654 345778999999999998764 5554 899999999999999 7762 345557889
Q ss_pred ccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCC-CCcccccccccccccCccchHhhhcCCC-CCceEEEEEcCc
Q 008415 276 EKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGC-GFWVVTEEEGNVLCEDAEPLMKELLGSK-HLNVLSWTFRSS 351 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~i~~~~~ 351 (566)
++|++|++++|..++. +|.. +.++++|++|++.+| .+.. ......+..++ +|+.|+++.+..
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~-------------~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE-------------KHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH-------------HHHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh-------------HHHHHHHHhcccCCCEEEeCCCcc
Confidence 9999999999966774 6665 889999999999999 6543 12455677788 888888875421
Q ss_pred -cchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEe
Q 008415 352 -LGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVS 429 (566)
Q Consensus 352 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~ 429 (566)
.....+.. .+..+++|+.|++++|. +..... .....+++|++|+
T Consensus 208 ~~~~~~l~~--------------------------~~~~~~~L~~L~l~~~~~l~~~~~--------~~l~~l~~L~~L~ 253 (336)
T 2ast_B 208 NLQKSDLST--------------------------LVRRCPNLVHLDLSDSVMLKNDCF--------QEFFQLNYLQHLS 253 (336)
T ss_dssp GSCHHHHHH--------------------------HHHHCTTCSEEECTTCTTCCGGGG--------GGGGGCTTCCEEE
T ss_pred cCCHHHHHH--------------------------HHhhCCCCCEEeCCCCCcCCHHHH--------HHHhCCCCCCEee
Confidence 00011111 12344566666666655 332111 1113446666666
Q ss_pred cccCcCCCC--CchhhccCCcceEeEecc
Q 008415 430 VHYCRKAKD--LTWLVFVQNLKVLRIGDC 456 (566)
Q Consensus 430 L~~c~~l~~--l~~l~~l~~L~~L~L~~~ 456 (566)
+++|..... +..++.+++|++|+|++|
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666643222 123555666666666666
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.5e-15 Score=154.83 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=42.7
Q ss_pred CCCCccEEEecCCcccccchH----HHhcCccCCEEecCCCCCCccc----cccccccCcchhccccCcEecccCcccCC
Q 008415 219 TCPRLVTLLLGGNRIEEITDG----FFQSMSTLRVLSLRINISLRKL----PSGIRGLPQELKALEKLRYLNLDYTRFLS 290 (566)
Q Consensus 219 ~~~~Lr~L~l~~~~l~~lp~~----~~~~l~~Lr~L~L~~~~~i~~l----p~~i~~LP~~i~~L~~L~~L~L~~~~~l~ 290 (566)
.+++|++|++++|.+...... .+..+++|++|+|++| .+..+ |..+..+...+.++++|++|++++| .++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 345555555555544322111 1334555555555554 43322 2222222223345555555555555 444
Q ss_pred c-----cchhhhcCCCCCcEEEecCCCC
Q 008415 291 I-----IPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 291 ~-----lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
. +|.. +..+++|++|++++|.+
T Consensus 108 ~~~~~~l~~~-l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 108 PTAQEPLIDF-LSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTHHHHHHH-HHHCTTCCEEECCSSCC
T ss_pred HHHHHHHHHH-HHhCCCCCEEECcCCCC
Confidence 3 4443 55555555555555544
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1e-14 Score=156.30 Aligned_cols=103 Identities=27% Similarity=0.386 Sum_probs=59.2
Q ss_pred ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.+..++.|.+.++.+..++.+..+++|+.|++++|.+..++. +..+++|++|+|++| .+..+| .+..++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~--------~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--------SLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT--------TSTTCT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh--------hhccCC
Confidence 344555566666665555555556666666666665555554 555666666666666 555433 145556
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
+|++|+|++| .+..+|. +..|++|+.|++++|.+
T Consensus 110 ~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 110 KLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp TCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCcc
Confidence 6666666666 5555544 55566666666665544
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=2.4e-15 Score=157.20 Aligned_cols=291 Identities=18% Similarity=0.147 Sum_probs=174.0
Q ss_pred cccEEEeecCCccc-----c-cCCCCCCCccEEEecCCcccccc-----hHHHhcCccCCEEecCCCCCCcccccccccc
Q 008415 200 GAKRVSLMGNGIRS-----L-SEIPTCPRLVTLLLGGNRIEEIT-----DGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~-----l-~~~~~~~~Lr~L~l~~~~l~~lp-----~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L 268 (566)
++++|++.+|.+.. + ..+..+++|++|++++|.+.... ..+....++|++|++++| .++.... ..+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~--~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC--EPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH--HHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH--HHH
Confidence 57788887777663 1 23567778888888887664321 121222456888888888 7664322 234
Q ss_pred CcchhccccCcEecccCcccCCccchhhhc-----CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCce
Q 008415 269 PQELKALEKLRYLNLDYTRFLSIIPHQLIS-----GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNV 343 (566)
Q Consensus 269 P~~i~~L~~L~~L~L~~~~~l~~lP~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 343 (566)
+..+..+++|++|++++| .+...+...+. .+++|++|++++|.+... ........+..+++|+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----------~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----------NCRDLCGIVASKASLRE 231 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----------HHHHHHHHHHHCTTCCE
T ss_pred HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----------HHHHHHHHHHhCCCccE
Confidence 555677788888888888 56543221122 366888888888876541 00123556778889999
Q ss_pred EEEEEcCccc--hhccccC-CcccccceEEEEecccCCCCCee---e-eccccccCcceEEEeccccceeeecccccccc
Q 008415 344 LSWTFRSSLG--VQNFLKY-PKLVSITQSVLVKSGVHTSPPFN---V-LHLAYMENLQKFELESCNLEEMKIDSTEEVKK 416 (566)
Q Consensus 344 L~i~~~~~~~--~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~-~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~ 416 (566)
|+++.+.... ...+... .....+|+.|++++ +. ..... + ..+..+++|++|++++|.+......... ..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~--~~ 307 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-CG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ET 307 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH--HH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcC-CC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH--HH
Confidence 9998664322 1111111 11246899999987 52 22211 1 1355678999999999884321111000 00
Q ss_pred cCccCCCcccEEecccCcCCCCC-----c-hhhccCCcceEeEecccCcccccccccccccccccCCCC-ccccccceee
Q 008415 417 LFQSGFRSLNTVSVHYCRKAKDL-----T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEH-NFFAQLEYLS 489 (566)
Q Consensus 417 ~~~~~l~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~-~~f~~L~~L~ 489 (566)
. ....++|++|++++|. +... + .+..+++|++|++++|. +........ ...+ ...++|+.|+
T Consensus 308 l-~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l--------~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 308 L-LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVREL--------CQGLGQPGSVLRVLW 376 (461)
T ss_dssp H-TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHH--------HHHHTSTTCCCCEEE
T ss_pred h-ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHH--------HHHHcCCCCceEEEE
Confidence 0 0134699999999985 4332 2 26678999999999884 332211000 0011 1267999999
Q ss_pred cccccccc-----ccCCCCCCCCCccEEeecCCCCCC
Q 008415 490 ISWGTNLK-----SVYPNPLPFPKLKKIDVCHCPQLK 521 (566)
Q Consensus 490 L~~~~~L~-----~l~~~~~~~p~L~~L~i~~C~~L~ 521 (566)
+++|. ++ .++.....+++|++|++++| .+.
T Consensus 377 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~ 411 (461)
T 1z7x_W 377 LADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLG 411 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred CCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence 99874 55 34433445899999999997 454
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=6.9e-14 Score=149.87 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=72.3
Q ss_pred CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415 216 EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 216 ~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~ 295 (566)
....+++|+.|++++|.+..++. +..+++|++|+|++| .+..+|. +..+++|++|+|++| .+..+|.
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l~~- 104 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--------LTNLKNLGWLFLDEN-KIKDLSS- 104 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--------GGGCTTCCEEECCSS-CCCCCTT-
T ss_pred chhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--------hccCCCCCEEECcCC-CCCCChh-
Confidence 33445555555555555555542 455555555555555 5544332 355555555555555 4555553
Q ss_pred hhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecc
Q 008415 296 LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSG 375 (566)
Q Consensus 296 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (566)
+..+++|++|++++|.+.. +..+..+++|+.|+++.+....+. ....+.+|+.|++++
T Consensus 105 -l~~l~~L~~L~Ls~N~l~~----------------l~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~- 162 (605)
T 1m9s_A 105 -LKDLKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLED- 162 (605)
T ss_dssp -STTCTTCCEEECTTSCCCC----------------CGGGGGCTTCSEEECCSSCCCCCG----GGGSCTTCSEEECCS-
T ss_pred -hccCCCCCEEEecCCCCCC----------------CccccCCCccCEEECCCCccCCch----hhcccCCCCEEECcC-
Confidence 5555555555555554432 123455555555555544333221 112234555555554
Q ss_pred cCCCCCeeeeccccccCcceEEEeccc
Q 008415 376 VHTSPPFNVLHLAYMENLQKFELESCN 402 (566)
Q Consensus 376 ~~~~~~~~~~~l~~~~~L~~L~l~~~~ 402 (566)
+. .. ....+..+++|+.|+|++|.
T Consensus 163 N~-l~--~~~~l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 163 NQ-IS--DIVPLAGLTKLQNLYLSKNH 186 (605)
T ss_dssp SC-CC--CCGGGTTCTTCCEEECCSSC
T ss_pred Cc-CC--CchhhccCCCCCEEECcCCC
Confidence 21 11 11124455555555555555
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=9.8e-15 Score=157.60 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=56.0
Q ss_pred CCcccEEecccCcC-CCC--Cchhh-ccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccc
Q 008415 422 FRSLNTVSVHYCRK-AKD--LTWLV-FVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK 497 (566)
Q Consensus 422 l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~ 497 (566)
+++|++|+++.|.. +.+ +..++ .+++|++|+|++|..-... ++.....+++|++|+|++|+ ++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG------------LMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH------------HHHHHTCCTTCCEEEEESCC-CB
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH------------HHHHHhcCcccCeeeccCCC-Cc
Confidence 55666666655443 121 12222 2566666666655421110 11124567899999999987 43
Q ss_pred c--cCCCCCCCCCccEEeecCCCCCCCCCC-CCccccCCcEEEe
Q 008415 498 S--VYPNPLPFPKLKKIDVCHCPQLKKLPL-NSSSAKERRVVIE 538 (566)
Q Consensus 498 ~--l~~~~~~~p~L~~L~i~~C~~L~~lP~-~~~~~l~~L~i~~ 538 (566)
. ++.....+|+|+.|++++|+ ++.-.. .+...++.+.+..
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEE
T ss_pred HHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEE
Confidence 2 22222357999999999997 654321 1222245565543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=8.6e-14 Score=128.75 Aligned_cols=103 Identities=26% Similarity=0.403 Sum_probs=63.0
Q ss_pred EEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEec
Q 008415 203 RVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLN 282 (566)
Q Consensus 203 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~ 282 (566)
.+...++.+..+|. ...++|+.|++++|.+..++...++.+++|++|++++| .++.+|... +.++++|++|+
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~l~~L~~L~ 82 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGV------FNKLTSLTYLN 82 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCCEEE
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhh------cCCCCCcCEEE
Confidence 34444555555542 22356667777766666666655666677777777766 666555433 56666777777
Q ss_pred ccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 283 LDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 283 L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
+++| .++.+|...++.+++|++|++++|.+.
T Consensus 83 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 83 LSTN-QLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCC-cCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 7766 566666554566667777776666554
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.9e-13 Score=127.50 Aligned_cols=146 Identities=20% Similarity=0.271 Sum_probs=112.5
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
.+...+..+..+|..- ...++.|.+.+|.+..++ .+..+++|+.|++++|.+..++...|.++++|++|+|++| .+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KI 92 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cC
Confidence 3555566666666422 267889999998888876 4677889999999999888775555888999999999999 88
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS 338 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 338 (566)
+.+|..+ +..+++|++|++++| .++.++.+.+..+++|++|++++|.+.. .....+..+
T Consensus 93 ~~l~~~~------f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l 151 (220)
T 2v9t_B 93 TELPKSL------FEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT--------------IAKGTFSPL 151 (220)
T ss_dssp CCCCTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--------------CCTTTTTTC
T ss_pred CccCHhH------ccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE--------------ECHHHHhCC
Confidence 8877655 688889999999998 7888866558889999999999888765 233456777
Q ss_pred CCCceEEEEEc
Q 008415 339 KHLNVLSWTFR 349 (566)
Q Consensus 339 ~~L~~L~i~~~ 349 (566)
++|+.|++..+
T Consensus 152 ~~L~~L~L~~N 162 (220)
T 2v9t_B 152 RAIQTMHLAQN 162 (220)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 78888777743
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=1.5e-14 Score=156.07 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=91.9
Q ss_pred cccEEEeecCCcc---cccC-CCCCCCccEEEecCCcccccc----hHHHhcCccCCEEecCCCCCCccccccccccCcc
Q 008415 200 GAKRVSLMGNGIR---SLSE-IPTCPRLVTLLLGGNRIEEIT----DGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE 271 (566)
Q Consensus 200 ~lr~Lsl~~~~~~---~l~~-~~~~~~Lr~L~l~~~~l~~lp----~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~ 271 (566)
++++|.+.++... .++. ...+++|++|++++|.+.... ..++..+++|++|+++++ .++.+.. ..++..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~--~~l~~~ 215 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISP--KDLETI 215 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCH--HHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCH--HHHHHH
Confidence 4777887766421 1111 136788888888888654321 223567888888888888 7653332 234555
Q ss_pred hhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCc
Q 008415 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSS 351 (566)
Q Consensus 272 i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~ 351 (566)
+.++++|++|++++| .+..+|.. +..+++|++|++........ .......+..+++|+.|++.....
T Consensus 216 ~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDIG-----------MPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp HHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCTT-----------CTTSSSCCCCCTTCCEEEETTCCT
T ss_pred HhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhcccccccccc-----------hHHHHHHhhccccccccCccccch
Confidence 677888888888888 67778865 88888888888875332210 112233445555666655543221
Q ss_pred cchhccccCCcccccceEEEEec
Q 008415 352 LGVQNFLKYPKLVSITQSVLVKS 374 (566)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~l~~ 374 (566)
..++ ......++|+.|++++
T Consensus 283 ~~l~---~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 283 NEMP---ILFPFAAQIRKLDLLY 302 (592)
T ss_dssp TTGG---GGGGGGGGCCEEEETT
T ss_pred hHHH---HHHhhcCCCcEEecCC
Confidence 1222 2222335666666665
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=2.4e-14 Score=145.87 Aligned_cols=243 Identities=15% Similarity=0.103 Sum_probs=149.1
Q ss_pred ccccccEEEeecCCcccc------cCCCCCCCccEEEecCCccc----ccchHH------HhcCccCCEEecCCCCCCcc
Q 008415 197 EWEGAKRVSLMGNGIRSL------SEIPTCPRLVTLLLGGNRIE----EITDGF------FQSMSTLRVLSLRINISLRK 260 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~~~l------~~~~~~~~Lr~L~l~~~~l~----~lp~~~------~~~l~~Lr~L~L~~~~~i~~ 260 (566)
...++++|++.+|.+... ..+..+++|++|++++|.+. .+|..+ +..+++|++|+|++| .+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCH
Confidence 346899999999987653 13578999999999998554 334442 478999999999999 8764
Q ss_pred ccccccccCcchhccccCcEecccCcccCCccchhh----hcCC---------CCCcEEEecCCCCcccccccccccccC
Q 008415 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL----ISGF---------SKLEVLRLFGCGFWVVTEEEGNVLCED 327 (566)
Q Consensus 261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~----i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 327 (566)
-- ...+|..+.++++|++|++++| .++..+... +..+ ++|++|++++|.+... .
T Consensus 109 ~~--~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~----------~ 175 (386)
T 2ca6_A 109 TA--QEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG----------S 175 (386)
T ss_dssp TT--HHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG----------G
T ss_pred HH--HHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH----------H
Confidence 11 1235666799999999999999 675432211 4444 8999999999987531 0
Q ss_pred ccchHhhhcCCCCCceEEEEEcCcc--chhcccc-CCcccccceEEEEecccCCCCC---eee-eccccccCcceEEEec
Q 008415 328 AEPLMKELLGSKHLNVLSWTFRSSL--GVQNFLK-YPKLVSITQSVLVKSGVHTSPP---FNV-LHLAYMENLQKFELES 400 (566)
Q Consensus 328 ~~~~~~~l~~L~~L~~L~i~~~~~~--~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~-~~l~~~~~L~~L~l~~ 400 (566)
.......+..+++|+.|+++.+... +...+.. .....++|+.|++++ +. ... ..+ ..+..+++|+.|++++
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~-l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NT-FTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SC-CHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-CC-CCcHHHHHHHHHHccCCCcCEEECCC
Confidence 1112246778889999999876543 2222222 333446677777776 32 110 001 1355667777777777
Q ss_pred cccceeeecccccccccCccCCCcccEEecccCcCCCC-----Cch-h-hccCCcceEeEecccC
Q 008415 401 CNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-----LTW-L-VFVQNLKVLRIGDCYD 458 (566)
Q Consensus 401 ~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~~-l-~~l~~L~~L~L~~~~~ 458 (566)
|.+........ +.......+++|++|+|++|. +.. ++. + ..+++|++|++++|..
T Consensus 254 n~i~~~~~~~l--~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 254 CLLSARGAAAV--VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCCCHHHHHHH--HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCCchhhHHHH--HHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 66322100000 000111235677777777653 333 433 3 4467777777766653
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=6.1e-13 Score=124.94 Aligned_cols=144 Identities=23% Similarity=0.205 Sum_probs=108.5
Q ss_pred EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+.+.+..+..+|.. -..++++|.+++|.+..++ .+..+++|++|++++|.+..+|...|..+++|++|+|++| .++
T Consensus 24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~ 101 (229)
T 3e6j_A 24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLT 101 (229)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCC
Confidence 44455555666542 2367888888888888764 3577888888888888888888776788888888888888 888
Q ss_pred cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK 339 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 339 (566)
.+|... +..+++|++|++++| .++.+|.. +..+++|++|++++|.+.. .....+..++
T Consensus 102 ~l~~~~------~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~ 159 (229)
T 3e6j_A 102 VLPSAV------FDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKS--------------IPHGAFDRLS 159 (229)
T ss_dssp CCCTTT------TTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC--------------CCTTTTTTCT
T ss_pred ccChhH------hCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCc--------------cCHHHHhCCC
Confidence 777554 678888888888888 78888887 7888888888888887754 2234567777
Q ss_pred CCceEEEEEc
Q 008415 340 HLNVLSWTFR 349 (566)
Q Consensus 340 ~L~~L~i~~~ 349 (566)
+|+.|++..+
T Consensus 160 ~L~~L~l~~N 169 (229)
T 3e6j_A 160 SLTHAYLFGN 169 (229)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEEeeCC
Confidence 7887777643
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=4.5e-13 Score=125.01 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=101.9
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
+.+...++.+..+|... .++|+.|++++|.+..++...|..+++|++|+|++| .++.++ |..+.++++|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~------~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELA------PDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEEC------TTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcC------HHHhhCCcCCCEE
Confidence 56777888888887533 379999999999999998866899999999999999 888664 3447999999999
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF 348 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 348 (566)
+|++| .++.+|.+++..+++|++|++++|.+.. ..+..+..+++|+.|+++.
T Consensus 86 ~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 86 VLYGN-KITELPKSLFEGLFSLQLLLLNANKINC--------------LRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCS
T ss_pred ECCCC-cCCccCHhHccCCCCCCEEECCCCCCCE--------------eCHHHcCCCCCCCEEECCC
Confidence 99999 8999998867899999999999998765 2345566777777776663
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.44 E-value=3.5e-15 Score=155.94 Aligned_cols=297 Identities=18% Similarity=0.134 Sum_probs=179.9
Q ss_pred cccccccEEEeecCCcccc-----c-CCCCCCCccEEEecCCccccc-chHHHhcCc----cCCEEecCCCCCCcccccc
Q 008415 196 EEWEGAKRVSLMGNGIRSL-----S-EIPTCPRLVTLLLGGNRIEEI-TDGFFQSMS----TLRVLSLRINISLRKLPSG 264 (566)
Q Consensus 196 ~~~~~lr~Lsl~~~~~~~l-----~-~~~~~~~Lr~L~l~~~~l~~l-p~~~~~~l~----~Lr~L~L~~~~~i~~lp~~ 264 (566)
..++++++|++.++.+... + .+..+++|++|++++|.+... +..++..++ +|++|++++| .++...-
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~- 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC- 102 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH-
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH-
Confidence 3456788888888877632 2 245678888888888877642 333344555 6888888888 7763211
Q ss_pred ccccCcchhccccCcEecccCcccCCccc-----hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415 265 IRGLPQELKALEKLRYLNLDYTRFLSIIP-----HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK 339 (566)
Q Consensus 265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP-----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 339 (566)
..+|..+.++++|++|++++| .++... .......++|++|++++|.+... ........++.++
T Consensus 103 -~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----------~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 103 -GVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA----------SCEPLASVLRAKP 170 (461)
T ss_dssp -HHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG----------GHHHHHHHHHHCT
T ss_pred -HHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH----------HHHHHHHHHhhCC
Confidence 234555788888888888888 565322 22122356788888888876541 0112345567788
Q ss_pred CCceEEEEEcCccc--hhccccCC-cccccceEEEEecccCCCCCee----eeccccccCcceEEEeccccceeeecccc
Q 008415 340 HLNVLSWTFRSSLG--VQNFLKYP-KLVSITQSVLVKSGVHTSPPFN----VLHLAYMENLQKFELESCNLEEMKIDSTE 412 (566)
Q Consensus 340 ~L~~L~i~~~~~~~--~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~l~~~~~~ 412 (566)
+|+.|+++.+.... ...+.... ....+|+.|++++ +. ..... ...+..+++|++|++++|.+.........
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES-CG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT-SC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC-CC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 99999998654322 11121111 0124889999987 53 12211 11355678999999999884321111000
Q ss_pred cccccCccCCCcccEEecccCcCCCC-----Cch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccc
Q 008415 413 EVKKLFQSGFRSLNTVSVHYCRKAKD-----LTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLE 486 (566)
Q Consensus 413 ~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~ 486 (566)
+.+ ...+++|++|++++| .+.. ++. +..+++|++|++++|.... ........ ......++|+
T Consensus 249 -~~~--~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~-------~l~~~~~~L~ 316 (461)
T 1z7x_W 249 -PGL--LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCE-------TLLEPGCQLE 316 (461)
T ss_dssp -HHH--TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-HHHHHHHH-------HHTSTTCCCC
T ss_pred -HHH--hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCch-HHHHHHHH-------HhccCCccce
Confidence 000 124789999999997 4554 333 6678999999999885322 11100000 0012346999
Q ss_pred eeecccccccccc-----CCCCCCCCCccEEeecCCCCCCC
Q 008415 487 YLSISWGTNLKSV-----YPNPLPFPKLKKIDVCHCPQLKK 522 (566)
Q Consensus 487 ~L~L~~~~~L~~l-----~~~~~~~p~L~~L~i~~C~~L~~ 522 (566)
.|++++|. ++.. +.....+++|++|++++| .+..
T Consensus 317 ~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~ 355 (461)
T 1z7x_W 317 SLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLED 355 (461)
T ss_dssp EEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHH
T ss_pred eeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-cccc
Confidence 99999885 4332 212234689999999998 5553
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.6e-13 Score=124.32 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=110.7
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCcccccC---CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE---IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
.+...+..+..+|.. -...+++|.+++|.+..++. +..+++|++|++++|.+..++...|+++++|++|+|++| .
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R 92 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence 344555556666542 23567888888888887742 567888999999998888887766888899999999988 8
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG 337 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (566)
++.+|... ++.+++|++|++++| .++.++...+..+++|++|++++|.+.. ..+..+..
T Consensus 93 l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~ 151 (220)
T 2v70_A 93 LENVQHKM------FKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT--------------VAPGAFDT 151 (220)
T ss_dssp CCCCCGGG------GTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC--------------BCTTTTTT
T ss_pred cCccCHhH------hcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE--------------ECHHHhcC
Confidence 88776543 788889999999988 7888755448888999999998887765 34566777
Q ss_pred CCCCceEEEEEc
Q 008415 338 SKHLNVLSWTFR 349 (566)
Q Consensus 338 L~~L~~L~i~~~ 349 (566)
+++|+.|+++.+
T Consensus 152 l~~L~~L~L~~N 163 (220)
T 2v70_A 152 LHSLSTLNLLAN 163 (220)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCCCEEEecCc
Confidence 888888887754
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=7.5e-13 Score=122.36 Aligned_cols=143 Identities=23% Similarity=0.348 Sum_probs=116.9
Q ss_pred EEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
+...+.++..+|.. ...++++|++.+|.+..++. +..+++|++|++++|.+..++...|..+++|++|++++| .++
T Consensus 12 v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~ 89 (208)
T 2o6s_A 12 VECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ 89 (208)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred EEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCC
Confidence 44455555556532 24689999999999988775 578999999999999999999887899999999999999 998
Q ss_pred cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK 339 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 339 (566)
.+|... ++++++|++|++++| .++.+|...+..+++|++|++++|.+.. .....+..++
T Consensus 90 ~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------------~~~~~~~~l~ 148 (208)
T 2o6s_A 90 SLPNGV------FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKS--------------VPDGVFDRLT 148 (208)
T ss_dssp CCCTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--------------CCTTTTTTCT
T ss_pred ccCHhH------hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccce--------------eCHHHhccCC
Confidence 877654 789999999999999 8999998767999999999999998754 2223456677
Q ss_pred CCceEEEE
Q 008415 340 HLNVLSWT 347 (566)
Q Consensus 340 ~L~~L~i~ 347 (566)
+|+.|+++
T Consensus 149 ~L~~L~l~ 156 (208)
T 2o6s_A 149 SLQYIWLH 156 (208)
T ss_dssp TCCEEECC
T ss_pred CccEEEec
Confidence 77777666
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=3.3e-13 Score=133.04 Aligned_cols=203 Identities=13% Similarity=0.024 Sum_probs=143.4
Q ss_pred ccccEEEeecCCccccc-C-C--CCCCCccEEEecCCccccc----chHHHhcCccCCEEecCCCCCCccccccccccCc
Q 008415 199 EGAKRVSLMGNGIRSLS-E-I--PTCPRLVTLLLGGNRIEEI----TDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQ 270 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~-~-~--~~~~~Lr~L~l~~~~l~~l----p~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~ 270 (566)
.++++|++.+|.+.... . + ..+++|++|++++|.+... +...+..+++|++|+|++| .+..+|..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~------ 163 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCE------ 163 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTT------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHH------
Confidence 56999999999887543 2 3 7799999999999987742 2233567999999999999 88876643
Q ss_pred chhccccCcEecccCcccCCc---cchh-hhcCCCCCcEEEecCCCCcccccccccccccCccchHhh-hcCCCCCceEE
Q 008415 271 ELKALEKLRYLNLDYTRFLSI---IPHQ-LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE-LLGSKHLNVLS 345 (566)
Q Consensus 271 ~i~~L~~L~~L~L~~~~~l~~---lP~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~ 345 (566)
.++++++|++|++++| .+.. ++.. .++.+++|++|++++|.+.. .+..... ++.+++|+.|+
T Consensus 164 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 164 QVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMET------------PTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp SCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------------HHHHHHHHHHHTCCCSSEE
T ss_pred HhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCc------------hHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999 5543 4332 13789999999999998754 1122222 46777788777
Q ss_pred EEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcc
Q 008415 346 WTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSL 425 (566)
Q Consensus 346 i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L 425 (566)
++.+..... .......+..+++|++|++++|.++.+|. ..+++|
T Consensus 231 Ls~N~l~~~-------------------------~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------~~~~~L 274 (310)
T 4glp_A 231 LSHNSLRAT-------------------------VNPSAPRCMWSSALNSLNLSFAGLEQVPK-----------GLPAKL 274 (310)
T ss_dssp CTTSCCCCC-------------------------CCSCCSSCCCCTTCCCEECCSSCCCSCCS-----------CCCSCC
T ss_pred CCCCCCCcc-------------------------chhhHHhccCcCcCCEEECCCCCCCchhh-----------hhcCCC
Confidence 764321110 00001122234789999999988555432 124799
Q ss_pred cEEecccCcCCCCCchhhccCCcceEeEecccC
Q 008415 426 NTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYD 458 (566)
Q Consensus 426 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~ 458 (566)
+.|+|+++ .+..+|.+..+++|+.|++++++.
T Consensus 275 ~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 275 RVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 99999885 677777778899999999988764
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=8e-13 Score=124.13 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=99.5
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
..+.++..++.+..+|.. -.++|++|++++|.+..++...|..+++|++|+|++| .++.+|... +..+++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~------~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGV------FDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTCTTCC
T ss_pred eCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhh------cccCCCcC
Confidence 455688888888888753 3489999999999998886666899999999999999 898877654 68899999
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
+|++++| .++.+|...+..+++|++|++++|.+.. .+..+..+++|+.|+++
T Consensus 92 ~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------------lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 92 VLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTE---------------LPRGIERLTHLTHLALD 143 (229)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCS---------------CCTTGGGCTTCSEEECC
T ss_pred EEECCCC-cCCccChhHhCcchhhCeEeccCCcccc---------------cCcccccCCCCCEEECC
Confidence 9999999 8999988767899999999999887754 33445666666666665
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=7.9e-13 Score=121.07 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred cccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 196 EEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 196 ~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
..+.+++++++.++.+..++.+..+++|++|++++|.+..++ . +..+++|++|++++| .++. ..|..++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n-~l~~------~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGK-DVTS------DKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECT-TCBG------GGSCCCTTC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECC-ccCc------ccChhhcCC
Confidence 445789999999999988888888999999999999777665 3 788999999999999 8764 233446889
Q ss_pred ccCcEecccCcccCCc-cchhhhcCCCCCcEEEecCCC-CcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 276 EKLRYLNLDYTRFLSI-IPHQLISGFSKLEVLRLFGCG-FWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~-lP~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
++|++|++++| .++. .|.. ++.+++|++|++++|. ... +..+..+++|+.|+++
T Consensus 112 ~~L~~L~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~----------------~~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 112 TSLTLLDISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITD----------------IMPLKTLPELKSLNIQ 167 (197)
T ss_dssp TTCCEEECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCC----------------CGGGGGCSSCCEEECT
T ss_pred CCCCEEEecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccc----------------cHhhcCCCCCCEEECC
Confidence 99999999999 6775 4554 8999999999999887 432 2356677777776665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=122.00 Aligned_cols=124 Identities=17% Similarity=0.265 Sum_probs=97.8
Q ss_pred ccEEEeecCCcccccCCCCCCCccEEEecCCccccc-chHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEI-TDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l-p~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
-++++++++.+..+|.. -.+.++.|++++|.+..+ +..+|+.+++|++|+|++| .++.+|.. .++++++|+
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~------~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG------AFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT------TTTTCTTCC
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHH------HhCCCCCCC
Confidence 35788888888888752 345788999999998887 4455789999999999999 88877653 378999999
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
+|++++| .++.+|.+.+..+++|++|++++|.+.. ..+..+..+++|+.|+++
T Consensus 85 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 85 EILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITC--------------VGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp EEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCC--------------BCTTSSTTCTTCSEEECT
T ss_pred EEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCe--------------ECHhHcCCCccCCEEECC
Confidence 9999999 7888888778899999999999988765 234456666666666665
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.4e-12 Score=119.38 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=119.5
Q ss_pred EEEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCCCc
Q 008415 181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
.+...+..+..++....+.++++|.+.+|.+..++.+..+++|++|++++|.+.. .+.. ++.+++|++|++++| .++
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~i~ 125 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-AHD 125 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS-BCB
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC-ccC
Confidence 3455566667777777889999999999999888888999999999999998875 4555 899999999999999 887
Q ss_pred cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK 339 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 339 (566)
. ..|..++++++|++|++++|..++.+|. +..+++|++|++++|.+.. +..+..++
T Consensus 126 ~------~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------------~~~l~~l~ 181 (197)
T 4ezg_A 126 D------SILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------------YRGIEDFP 181 (197)
T ss_dssp G------GGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------------CTTGGGCS
T ss_pred c------HhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------------hHHhccCC
Confidence 4 2344579999999999999944999985 9999999999999998754 22678889
Q ss_pred CCceEEEEEcC
Q 008415 340 HLNVLSWTFRS 350 (566)
Q Consensus 340 ~L~~L~i~~~~ 350 (566)
+|+.|+++.+.
T Consensus 182 ~L~~L~l~~N~ 192 (197)
T 4ezg_A 182 KLNQLYAFSQT 192 (197)
T ss_dssp SCCEEEECBC-
T ss_pred CCCEEEeeCcc
Confidence 99999988543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=7.2e-13 Score=133.55 Aligned_cols=107 Identities=23% Similarity=0.291 Sum_probs=56.9
Q ss_pred cccEEEeecCCcccccC--CC-CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 200 GAKRVSLMGNGIRSLSE--IP-TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~--~~-~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.++.|++++|.+..++. +. .+++|++|++++|.+..++...|.++++|++|+|++| .++.+|... +.+++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFL------FSDLQ 112 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT------TTTCT
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHH------hCCCc
Confidence 45555555555555442 22 4555555555555555555444555555555555555 555444332 45555
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
+|++|+|++| .++.++...+..+++|++|++++|.+.
T Consensus 113 ~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCC
Confidence 5555555555 455554333555555555555555543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.1e-12 Score=125.89 Aligned_cols=150 Identities=20% Similarity=0.180 Sum_probs=101.5
Q ss_pred CCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 193 PKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 193 ~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
+....+.++++|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .++.+|..
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~-------- 103 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGI-------- 103 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTC--------
T ss_pred cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcc--------
Confidence 3344556777777777777777777777778888887777777765 677777888888877 77766542
Q ss_pred hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCcc
Q 008415 273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSL 352 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~ 352 (566)
.. .+|++|++++| .++.+|. ++.+++|++|++++|.+.. +..++.+++|+.|+++.+..
T Consensus 104 ~~-~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~----------------~~~l~~l~~L~~L~L~~N~i- 162 (263)
T 1xeu_A 104 PS-ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS----------------IVMLGFLSKLEVLDLHGNEI- 162 (263)
T ss_dssp CC-SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB----------------CGGGGGCTTCCEEECTTSCC-
T ss_pred cc-CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC----------------ChHHccCCCCCEEECCCCcC-
Confidence 22 77778888777 6777764 7777788888877776643 12455666666666553211
Q ss_pred chhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEecccc
Q 008415 353 GVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNL 403 (566)
Q Consensus 353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 403 (566)
... ..+..+++|+.|++++|.+
T Consensus 163 ---------------------------~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 163 ---------------------------TNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ---------------------------CBC--TTSTTCCCCCEEEEEEEEE
T ss_pred ---------------------------cch--HHhccCCCCCEEeCCCCcc
Confidence 111 3456677888888888773
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=2.8e-13 Score=130.07 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=128.3
Q ss_pred cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415 198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK 277 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~ 277 (566)
+.++..+.+..+.+.+++.+..+++|++|++++|.+..++ . ++.+++|++|++++| .++.+|. ++++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~--------l~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP--------LKDLTK 86 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG--------GTTCSS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh--------hccCCC
Confidence 4556666777788888777788899999999999988888 3 788999999999999 8877664 588999
Q ss_pred CcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcc
Q 008415 278 LRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNF 357 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~ 357 (566)
|++|++++| .++.+|. +.. ++|++|++++|.+.. +..++.+++|+.|+++.+.
T Consensus 87 L~~L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N~l~~----------------~~~l~~l~~L~~L~Ls~N~------- 139 (263)
T 1xeu_A 87 LEELSVNRN-RLKNLNG--IPS-ACLSRLFLDNNELRD----------------TDSLIHLKNLEILSIRNNK------- 139 (263)
T ss_dssp CCEEECCSS-CCSCCTT--CCC-SSCCEEECCSSCCSB----------------SGGGTTCTTCCEEECTTSC-------
T ss_pred CCEEECCCC-ccCCcCc--ccc-CcccEEEccCCccCC----------------ChhhcCcccccEEECCCCc-------
Confidence 999999999 8999887 555 999999999987754 2357777777777665321
Q ss_pred ccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcC
Q 008415 358 LKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK 435 (566)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 435 (566)
... +..+..+++|+.|++++|.+..+ .....+++|+.|++++++.
T Consensus 140 ---------------------i~~--~~~l~~l~~L~~L~L~~N~i~~~----------~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 140 ---------------------LKS--IVMLGFLSKLEVLDLHGNEITNT----------GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ---------------------CCB--CGGGGGCTTCCEEECTTSCCCBC----------TTSTTCCCCCEEEEEEEEE
T ss_pred ---------------------CCC--ChHHccCCCCCEEECCCCcCcch----------HHhccCCCCCEEeCCCCcc
Confidence 111 12466788999999999985543 2234689999999998653
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=2.2e-13 Score=137.43 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=113.7
Q ss_pred CCccEEEecCCcccccch----HHHhcCc-cCCEEecCCCCCCccccccccccCcchhcc-----ccCcEecccCcccCC
Q 008415 221 PRLVTLLLGGNRIEEITD----GFFQSMS-TLRVLSLRINISLRKLPSGIRGLPQELKAL-----EKLRYLNLDYTRFLS 290 (566)
Q Consensus 221 ~~Lr~L~l~~~~l~~lp~----~~~~~l~-~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L-----~~L~~L~L~~~~~l~ 290 (566)
++|++|++++|.+...+. ..+..++ +|++|+|++| .++.... ..+..+ ++|++|++++| .++
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~------~~l~~~l~~~~~~L~~L~Ls~n-~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNS------DELVQILAAIPANVTSLNLSGN-FLS 93 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCH------HHHHHHHHTSCTTCCEEECCSS-CGG
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHH------HHHHHHHhccCCCccEEECcCC-cCC
Confidence 336666666666555543 3355555 5666666666 5554321 123333 56666666666 455
Q ss_pred ccchhhh----cCC-CCCcEEEecCCCCcccccccccccccCccchHhhhcCC-CCCceEEEEEcCcc--chhccccCCc
Q 008415 291 IIPHQLI----SGF-SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS-KHLNVLSWTFRSSL--GVQNFLKYPK 362 (566)
Q Consensus 291 ~lP~~~i----~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~i~~~~~~--~~~~~~~~~~ 362 (566)
..+...+ ..+ ++|++|++++|.+... ........+..+ ++|+.|+++.+... ....+.....
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSK----------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGS----------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcH----------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 4433212 223 5666666666655431 000111223332 45666666544322 1111111111
Q ss_pred cc-ccceEEEEecccCCCCCeeee----ccccc-cCcceEEEeccccceeeecccccccccCccC-CCcccEEecccCcC
Q 008415 363 LV-SITQSVLVKSGVHTSPPFNVL----HLAYM-ENLQKFELESCNLEEMKIDSTEEVKKLFQSG-FRSLNTVSVHYCRK 435 (566)
Q Consensus 363 ~~-~~L~~L~l~~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~ 435 (566)
.. .+|+.|++++ +. ....... .+... ++|+.|++++|.+........ + ..... .++|++|+|+++ .
T Consensus 164 ~~~~~L~~L~Ls~-n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l--~--~~l~~~~~~L~~L~Ls~N-~ 236 (362)
T 3goz_A 164 AIPANVNSLNLRG-NN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL--A--YIFSSIPNHVVSLNLCLN-C 236 (362)
T ss_dssp TSCTTCCEEECTT-SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH--H--HHHHHSCTTCCEEECCSS-C
T ss_pred cCCccccEeeecC-CC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH--H--HHHhcCCCCceEEECcCC-C
Confidence 11 2566666665 32 1111111 13334 478888888877433111000 0 00011 357888888875 4
Q ss_pred CCCCch------hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415 436 AKDLTW------LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493 (566)
Q Consensus 436 l~~l~~------l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~ 493 (566)
+.+.+. +..+++|+.|++++|..- .+..... . .++..+..+++|+.|++++.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~-~i~~~~~-~----~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVK-NMSKEQC-K----ALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHT-TCCHHHH-H----HHHTTSTTCCEEEEECTTSC
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCcc-ccCHHHH-H----HHHHHhccCCceEEEecCCC
Confidence 544322 355788888888877511 1110000 0 01124556777888888764
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=2.1e-13 Score=147.17 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=55.3
Q ss_pred CCCcccEEecccCcCCCC--Cchhhc-cCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccc
Q 008415 421 GFRSLNTVSVHYCRKAKD--LTWLVF-VQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK 497 (566)
Q Consensus 421 ~l~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~ 497 (566)
.+++|++|+|++ .+.+ ++.++. +++|+.|+|++|........ .-...+++|+.|+|++|+. .
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------------~l~~~~~~L~~L~L~~n~~-~ 494 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------------HVLSGCDSLRKLEIRDCPF-G 494 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------------HHHHHCTTCCEEEEESCSC-C
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------------HHHhcCCCcCEEECcCCCC-c
Confidence 345666666644 2222 222333 66677777766653111110 1124588999999998874 3
Q ss_pred ccC--CCCCCCCCccEEeecCCCCCCCCCCCCccc---cCCcEEEec
Q 008415 498 SVY--PNPLPFPKLKKIDVCHCPQLKKLPLNSSSA---KERRVVIEG 539 (566)
Q Consensus 498 ~l~--~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~---l~~L~i~~~ 539 (566)
... .....+++|+.|++++|+. .+.+...+ ++.+.+..+
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV---SFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC---BHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC---CHHHHHHHHHhCCCCEEEEe
Confidence 211 1224478999999999975 23332222 466666443
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=1.9e-13 Score=147.59 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=52.9
Q ss_pred ccccEEEeecCCcccc--cCCC-CCCCccEEEecCC-cccc--cchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 199 EGAKRVSLMGNGIRSL--SEIP-TCPRLVTLLLGGN-RIEE--ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l--~~~~-~~~~Lr~L~l~~~-~l~~--lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
.++++|.+.++.+... ..+. .+++|++|++.+| .+.. ++. ++.++++|++|++++| .++.... ..++.-.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~i~~~~~--~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRES-DVDDVSG--HWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTC-EEECCCG--GGGGGSC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCC-ccCCcch--HHHHHHh
Confidence 4666666666654431 1111 4567777777666 3332 222 2446667777777766 4443211 1122222
Q ss_pred hccccCcEecccCcccCCccchh----hhcCCCCCcEEEecCC
Q 008415 273 KALEKLRYLNLDYTRFLSIIPHQ----LISGFSKLEVLRLFGC 311 (566)
Q Consensus 273 ~~L~~L~~L~L~~~~~l~~lP~~----~i~~L~~L~~L~l~~~ 311 (566)
..+++|++|++++|. ..++.. .+.++++|++|++.+|
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 345566666666652 222211 1233466666666655
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=2.8e-13 Score=136.69 Aligned_cols=263 Identities=14% Similarity=0.072 Sum_probs=167.0
Q ss_pred EEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc-cCcEecccCcccCCccchhhhcCC----
Q 008415 226 LLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE-KLRYLNLDYTRFLSIIPHQLISGF---- 300 (566)
Q Consensus 226 L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~-~L~~L~L~~~~~l~~lP~~~i~~L---- 300 (566)
+.++.+.+....+.++...++|++|+|++| .++..+. ..+-..+.+++ +|++|++++| .++......+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSIST--VELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCH--HHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHH--HHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhcc
Confidence 567777777665665777777999999999 8987664 11224467888 9999999999 7887654336664
Q ss_pred -CCCcEEEecCCCCcccccccccccccCccchHhhhcCC-CCCceEEEEEcCccchh--ccccCCcc-cccceEEEEecc
Q 008415 301 -SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS-KHLNVLSWTFRSSLGVQ--NFLKYPKL-VSITQSVLVKSG 375 (566)
Q Consensus 301 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~i~~~~~~~~~--~~~~~~~~-~~~L~~L~l~~~ 375 (566)
++|++|++++|.+... ........+..+ ++|+.|+++.+...... .+...... ..+|+.|++++
T Consensus 79 ~~~L~~L~Ls~n~l~~~----------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~- 147 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYK----------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG- 147 (362)
T ss_dssp CTTCCEEECCSSCGGGS----------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-
T ss_pred CCCccEEECcCCcCChH----------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-
Confidence 9999999999987641 011122235566 89999999976543221 12111111 35899999997
Q ss_pred cCCCCCeeee----cccccc-CcceEEEeccccceeeecccccccccCccCC-CcccEEecccCcCCCC-----Cch-hh
Q 008415 376 VHTSPPFNVL----HLAYME-NLQKFELESCNLEEMKIDSTEEVKKLFQSGF-RSLNTVSVHYCRKAKD-----LTW-LV 443 (566)
Q Consensus 376 ~~~~~~~~~~----~l~~~~-~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~-----l~~-l~ 443 (566)
+. ....... .+...+ +|++|++++|.+......... .....+ ++|+.|+|+++. +.+ ++. +.
T Consensus 148 N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 148 ND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA----KFLASIPASVTSLDLSANL-LGLKSYAELAYIFS 221 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH
T ss_pred Cc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH----HHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHh
Confidence 42 1111111 233444 999999999984432211000 001234 599999999974 554 332 44
Q ss_pred c-cCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccc-------cccccCCCCCCCCCccEEeec
Q 008415 444 F-VQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT-------NLKSVYPNPLPFPKLKKIDVC 515 (566)
Q Consensus 444 ~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~-------~L~~l~~~~~~~p~L~~L~i~ 515 (566)
. .++|++|+|++|..-. .+... +......+++|+.|+++++. .+..+......+++|+.|+++
T Consensus 222 ~~~~~L~~L~Ls~N~l~~-~~~~~--------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHG-PSLEN--------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HSCTTCCEEECCSSCCCC-CCHHH--------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred cCCCCceEEECcCCCCCc-HHHHH--------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 4 3599999999985332 21100 11234678899999999875 133344445567889999998
Q ss_pred CCC
Q 008415 516 HCP 518 (566)
Q Consensus 516 ~C~ 518 (566)
+++
T Consensus 293 ~N~ 295 (362)
T 3goz_A 293 GKE 295 (362)
T ss_dssp SCB
T ss_pred CCc
Confidence 853
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.3e-12 Score=117.27 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=108.3
Q ss_pred ccccccccEEEeecCCcccccCCCCCC-CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415 195 FEEWEGAKRVSLMGNGIRSLSEIPTCP-RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273 (566)
Q Consensus 195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~-~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~ 273 (566)
.....+++.|.+.+|.+..++.+..+. +|++|++++|.+..++ . ++.+++|++|++++| .++.+|..+ ++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~------~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGL------DQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCH------HH
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcch------hh
Confidence 334568999999999999887776665 9999999999988873 3 889999999999999 998877554 58
Q ss_pred ccccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 274 ALEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 274 ~L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
.+++|++|++++| .++.+|. . ++.+++|++|++.+|.+... .......+..+++|+.|+++.+.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~i~~~-----------~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNPVTNK-----------KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSGGGGS-----------TTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCCCCCc-----------HhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999 8899987 5 88999999999999987541 11112247788889988888654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=6.9e-12 Score=126.35 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=137.3
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHh-cCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQ-SMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~-~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
+.+.+.++++..+|.. -.+.++.|++++|.+..++...+. ++++|++|+|++| .++.+|.. .+.++++|++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~------~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE------AFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT------TTTTCTTCCE
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChh------hccCCCCCCE
Confidence 5788888888888753 346799999999999999887676 8999999999999 99887754 3799999999
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc-c
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL-K 359 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~-~ 359 (566)
|+|++| .++.+|.+.+..+++|++|++++|.+.. .....+..+++|+.|+++.+....++... .
T Consensus 93 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 93 LDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVV--------------VDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE--------------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred EECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccE--------------ECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 999999 8999988768999999999999998865 34567889999999999987766654422 1
Q ss_pred CCcccccceEEEEecccCCCCCeeeeccccccC--cceEEEeccc
Q 008415 360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMEN--LQKFELESCN 402 (566)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~ 402 (566)
....+.+|+.|++++ +....+....+..++. ++.|++.+|.
T Consensus 158 ~~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 158 DGNKLPKLMLLDLSS--NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----CTTCCEEECCS--SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcccCCcCCEEECCC--CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 113347899999997 2233333334555665 4889999877
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=4.1e-12 Score=113.02 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=101.2
Q ss_pred ccccEEEeecCCcc--cccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 199 EGAKRVSLMGNGIR--SLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
.++++|.+.+|.+. .+|.. ..+++|++|++++|.+..+ .. ++.+++|++|++++| .++.. +|..++++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~------~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSEN-RIFGG------LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESC-CCCSC------CCHHHHHC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCC-cCchH------HHHHHhhC
Confidence 57899999999887 67654 7788999999999988877 33 788999999999999 88752 23346779
Q ss_pred ccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 276 EKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
++|++|++++| .++.+|. ..+..+++|++|++++|.+... .......+..+++|+.|++..+.
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-----------~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL-----------NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS-----------TTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch-----------HHHHHHHHHhCccCcEecCCCCC
Confidence 99999999999 7888873 2388999999999998877541 11112467888888888888654
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=9.7e-12 Score=113.26 Aligned_cols=124 Identities=21% Similarity=0.280 Sum_probs=89.5
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L 281 (566)
+.+.+.++.+..+|.. -.++|++|++++|.+..+|.. |..+++|++|+|++| .++.++... +.++++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~------f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQS------FSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhH------ccCCCCCCEE
Confidence 4566677777777643 236788888888888888755 788888888888888 787766433 6788888888
Q ss_pred cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
++++| .++.+|.+.+..+++|++|++.+|.+.. .....+..+++|+.|++..+
T Consensus 84 ~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 84 ILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISV--------------VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp ECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTTTCTTCCEEECCSS
T ss_pred ECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCe--------------eChhhhhcCccccEEEeCCC
Confidence 88888 7888776557888888888888877654 22234566777777777643
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=2.4e-11 Score=128.80 Aligned_cols=185 Identities=17% Similarity=0.147 Sum_probs=125.6
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
+++.|++.++.+..+|... +++|++|++++|.+..+| ..+++|++|++++| .++.+|. + .+ +|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l-------~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-L-------PA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-C-------CT--TCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-h-------hc--CCC
Confidence 7888999998888877633 478999999999888888 34788999999999 8887765 3 33 899
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK 359 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~ 359 (566)
+|++++| .++.+|. .+++|++|++++|.+.. .+. .+++|+.|+++.+...
T Consensus 124 ~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~---------------lp~---~l~~L~~L~Ls~N~L~------- 173 (571)
T 3cvr_A 124 HLDVDNN-QLTMLPE----LPALLEYINADNNQLTM---------------LPE---LPTSLEVLSVRNNQLT------- 173 (571)
T ss_dssp EEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC---------------CCC---CCTTCCEEECCSSCCS-------
T ss_pred EEECCCC-cCCCCCC----cCccccEEeCCCCccCc---------------CCC---cCCCcCEEECCCCCCC-------
Confidence 9999999 7888887 57899999999887654 111 3455666665533211
Q ss_pred CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415 360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439 (566)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 439 (566)
.+ +.+. ++|+.|++++|.+..+|. .. ... ....+.|+.|+|+++ .++.+
T Consensus 174 ---------------------~l--p~l~--~~L~~L~Ls~N~L~~lp~-~~---~~L-~~~~~~L~~L~Ls~N-~l~~l 222 (571)
T 3cvr_A 174 ---------------------FL--PELP--ESLEALDVSTNLLESLPA-VP---VRN-HHSEETEIFFRCREN-RITHI 222 (571)
T ss_dssp ---------------------CC--CCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSS-CCCCC
T ss_pred ---------------------Cc--chhh--CCCCEEECcCCCCCchhh-HH---Hhh-hcccccceEEecCCC-cceec
Confidence 11 1122 677888887777544432 00 000 001122388888885 56677
Q ss_pred ch-hhccCCcceEeEecccCccc
Q 008415 440 TW-LVFVQNLKVLRIGDCYDMEE 461 (566)
Q Consensus 440 ~~-l~~l~~L~~L~L~~~~~l~~ 461 (566)
|. +..+++|+.|+|++|+....
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCc
Confidence 66 77789999999988865443
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=112.15 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=108.3
Q ss_pred eEEEecCCccccCCCccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415 180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258 (566)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i 258 (566)
..+...+..+..+|.. -..+++.|.+.+|.+..+| .+..+++|++|++++|.+..++...|.++++|++|+|++| .+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 3455666677777743 2368999999999999886 5678999999999999999998877999999999999999 99
Q ss_pred ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
+.+|.. .+..+++|++|++++| .++.+|.+++..+++|++|++.+|...
T Consensus 91 ~~i~~~------~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPR------TFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTT------TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHH------HhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 987754 3799999999999999 899999877899999999999998764
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.1e-11 Score=109.44 Aligned_cols=108 Identities=29% Similarity=0.491 Sum_probs=64.5
Q ss_pred ccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.++++|.+.+|.+..++. +..+++|++|++++|.+..+|...++.+++|++|++++| .++.+|... +++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~------~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGV------FDKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTCT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHH------hhCCc
Confidence 456666666666655543 345666666666666666665554566666666666666 665555432 45666
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW 314 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 314 (566)
+|++|++++| .++.+|.+++..+++|++|++.+|...
T Consensus 101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 6666666666 566666553455666666666666543
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=1.7e-11 Score=110.06 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=106.0
Q ss_pred ccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
.+.+.+.++++..+|. ...++|++|++++|.+..++...++.+++|++|++++| .++.+|... ++++++|++
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV------FDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCCE
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhH------ccCCCccCE
Confidence 4677888888888874 34579999999999999998877899999999999999 998877654 789999999
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 350 (566)
|++++| .++.+|...+..+++|++|++.+|.+.. .....+..+++|+.|+++.+.
T Consensus 81 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------------~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 81 LYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKS--------------VPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--------------CCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-CccccCHHHhhCCcccCEEECcCCcceE--------------eCHHHhcCCcccCEEEecCCC
Confidence 999999 8999998767899999999999998764 223345778889988887543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=5.3e-12 Score=109.90 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=99.6
Q ss_pred ccccEEEeecCCcc--cccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 199 EGAKRVSLMGNGIR--SLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
.+++++.+.++.+. .++.. ..+++|++|++++|.+..+ .. ++.+++|++|++++| .++.. +|..++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~------~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGG------LEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSC------THHHHHHC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccch------HHHHhhhC
Confidence 68999999999988 66654 7889999999999988887 33 889999999999999 88752 33346789
Q ss_pred ccCcEecccCcccCCccc--hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEE
Q 008415 276 EKLRYLNLDYTRFLSIIP--HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSW 346 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i 346 (566)
++|++|++++| .++.+| .. ++.+++|++|++++|.+... .......++.+++|+.|++
T Consensus 88 ~~L~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~-----------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNL-----------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGS-----------TTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccch-----------HHHHHHHHHHCCCcccccC
Confidence 99999999999 788876 44 89999999999999977541 1111245677778877654
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=3e-11 Score=128.03 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=120.4
Q ss_pred CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCC
Q 008415 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGF 300 (566)
Q Consensus 221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L 300 (566)
.+|++|++++|.+..+|..+ +++|++|+|++| .++.+| +.+++|++|++++| .++.+|. +.+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip----------~~l~~L~~L~Ls~N-~l~~ip~--l~~- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP----------ELPASLEYLDACDN-RLSTLPE--LPA- 120 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCCCC--CCT-
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc----------cccCCCCEEEccCC-CCCCcch--hhc-
Confidence 37888888888888888763 377888888888 777655 23578888888888 7888887 554
Q ss_pred CCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCC
Q 008415 301 SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSP 380 (566)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 380 (566)
+|++|++++|.+.. .+. .+++|+.|+++ + +. ..
T Consensus 121 -~L~~L~Ls~N~l~~---------------lp~---~l~~L~~L~Ls--------------------------~-N~-l~ 153 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTM---------------LPE---LPALLEYINAD--------------------------N-NQ-LT 153 (571)
T ss_dssp -TCCEEECCSSCCSC---------------CCC---CCTTCCEEECC--------------------------S-SC-CS
T ss_pred -CCCEEECCCCcCCC---------------CCC---cCccccEEeCC--------------------------C-Cc-cC
Confidence 88888888876643 111 34555555554 3 11 11
Q ss_pred CeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCc-------ceEeE
Q 008415 381 PFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNL-------KVLRI 453 (566)
Q Consensus 381 ~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L-------~~L~L 453 (566)
. ++. .+++|+.|++++|.+..++. .. ++|+.|+|+++ .++.+|.+.. +| +.|++
T Consensus 154 ~--lp~--~l~~L~~L~Ls~N~L~~lp~----------l~--~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 154 M--LPE--LPTSLEVLSVRNNQLTFLPE----------LP--ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp C--CCC--CCTTCCEEECCSSCCSCCCC----------CC--TTCCEEECCSS-CCSSCCCCC----------CCEEEEC
T ss_pred c--CCC--cCCCcCEEECCCCCCCCcch----------hh--CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEec
Confidence 1 111 45789999999998554431 11 89999999986 6777776433 77 99999
Q ss_pred ecccCcccccccccccccccccCCCCccccccceeeccccc
Q 008415 454 GDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT 494 (566)
Q Consensus 454 ~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~ 494 (566)
++|. ++.+ |..+..+++|+.|+|++++
T Consensus 215 s~N~-l~~l-------------p~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 215 RENR-ITHI-------------PENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CSSC-CCCC-------------CGGGGGSCTTEEEECCSSS
T ss_pred CCCc-ceec-------------CHHHhcCCCCCEEEeeCCc
Confidence 9875 3433 3456679999999999865
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.7e-11 Score=109.97 Aligned_cols=128 Identities=27% Similarity=0.276 Sum_probs=108.0
Q ss_pred EEEecCCccccCCCccccc-cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415 181 FLVHAGVELTEAPKFEEWE-GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
.+...+..+..++...... +++.|++++|.+..++.+..+++|++|++++|.+..+|..+++.+++|++|++++| .++
T Consensus 23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~ 101 (176)
T 1a9n_A 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLV 101 (176)
T ss_dssp EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCC
T ss_pred EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCC
Confidence 3455555666666655555 99999999999999988899999999999999999999876799999999999999 998
Q ss_pred cccccccccCcchhccccCcEecccCcccCCccchh---hhcCCCCCcEEEecCCCCcc
Q 008415 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ---LISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~---~i~~L~~L~~L~l~~~~~~~ 315 (566)
.+|.- ..++.+++|++|++++| .+..+|.. +++.+++|++|++.++....
T Consensus 102 ~~~~~-----~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 102 ELGDL-----DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CGGGG-----GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cchhh-----HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77650 13689999999999999 78888874 58999999999999887643
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2.6e-11 Score=110.34 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=54.5
Q ss_pred cccEEEeecCCcccccC---CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 200 GAKRVSLMGNGIRSLSE---IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.++.|.+.+|.+..++. +..+++|++|++++|.+..++...|+.+++|++|+|++| .++.+|... +++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKM------FLGLH 102 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSS------STTCT
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHH------hcCCC
Confidence 55555555555555442 345555555555555555543333555555555555555 555444322 45555
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
+|++|++++| .++.++...+..+++|++|++.+|..
T Consensus 103 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 103 QLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5555555555 45444322255555555555555544
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=6.2e-11 Score=105.34 Aligned_cols=128 Identities=24% Similarity=0.262 Sum_probs=105.4
Q ss_pred EEEecCCccc--cCCCc-cccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 181 FLVHAGVELT--EAPKF-EEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 181 ~~~~~~~~~~--~~~~~-~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
.+...+..+. .+|.. ..+.+++.|++.+|.+..++.+..+++|++|++++|.+...++..++.+++|++|++++| .
T Consensus 28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 106 (168)
T 2ell_A 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-K 106 (168)
T ss_dssp EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-S
T ss_pred EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-c
Confidence 3444555555 55554 667899999999999998888899999999999999998834444888999999999999 9
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccch---hhhcCCCCCcEEEecCCCCcc
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~~~~~~~ 315 (566)
++.+|. +..++.+++|++|++++| .++.+|. ..+..+++|++|++.+|....
T Consensus 107 l~~~~~-----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 107 LKDIST-----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCSSGG-----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCcchh-----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 987763 134689999999999999 8888887 449999999999999987754
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=2.5e-11 Score=110.48 Aligned_cols=125 Identities=19% Similarity=0.307 Sum_probs=104.0
Q ss_pred cEEEeecCCcccccCCCCCCCccEEEecCCcccccchH-HHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDG-FFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~-~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
++++++++.+..+|... ..+|++|++++|.+..++.. +++.+++|++|+|++| .++.++ |..++++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~------~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIE------PNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC------TTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcC------HhHcCCcccCCE
Confidence 67888889988888632 34999999999999888763 5899999999999999 998664 344799999999
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
|++++| .++.+|...+..+++|++|++++|.+.. ..+..+..+++|+.|+++.+
T Consensus 83 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 83 LQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISC--------------VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCE--------------ECTTSSTTCTTCCEEECTTC
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCe--------------eCHHHhhcCCCCCEEEeCCC
Confidence 999999 8999887668999999999999998865 34566778888888887743
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=4.2e-11 Score=107.03 Aligned_cols=106 Identities=22% Similarity=0.330 Sum_probs=92.1
Q ss_pred ccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
.+.+.+.++.+..+|... .++|++|++++|.+..++...|+++++|++|+|++| .++.+|..+ ++++++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~------~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGV------FDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhH------hCCcchhhE
Confidence 357888888888888633 389999999999999887666899999999999999 998888654 689999999
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
|+|++| .++.+|.+.+..+++|++|++.+|....
T Consensus 86 L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 86 LDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EECCCC-ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999 8999998768999999999999998754
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=4.6e-11 Score=106.37 Aligned_cols=107 Identities=24% Similarity=0.346 Sum_probs=92.5
Q ss_pred cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~ 279 (566)
..+.+++.++.+..+|... .++|++|++++|.+..++...|+++++|++|+|++| .++.+|... +.++++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~------f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGV------FDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCC
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhh------ccCCCCCC
Confidence 3467888889998888543 489999999999999987666899999999999999 998888654 78999999
Q ss_pred EecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+|+|++| .++.+|.+++..+++|++|++.+|...-
T Consensus 82 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 82 QLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999999 8999998768999999999999987753
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3e-11 Score=128.61 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=59.9
Q ss_pred CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCC
Q 008415 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFS 301 (566)
Q Consensus 222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~ 301 (566)
.|++|++++|.+..+|. ++.+++|++|+|++| .++.+|.. +++|++|++|+|++| .++.+| + ++.++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~-------~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPA-------LAALRCLEVLQASDN-ALENVD-G-VANLP 508 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGG-------GGGCTTCCEEECCSS-CCCCCG-G-GTTCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchh-------hhcCCCCCEEECCCC-CCCCCc-c-cCCCC
Confidence 35666666666655554 556666666666666 55544432 356666666666666 566665 3 66666
Q ss_pred CCcEEEecCCCCcccccccccccccCccch-HhhhcCCCCCceEEEEEcCccc
Q 008415 302 KLEVLRLFGCGFWVVTEEEGNVLCEDAEPL-MKELLGSKHLNVLSWTFRSSLG 353 (566)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~i~~~~~~~ 353 (566)
+|++|++++|.+.. .. +..++.+++|+.|+++.+....
T Consensus 509 ~L~~L~Ls~N~l~~--------------~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 509 RLQELLLCNNRLQQ--------------SAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCEEECCSSCCCS--------------SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCcEEECCCCCCCC--------------CCCcHHHhcCCCCCEEEecCCcCCC
Confidence 66666666665543 11 4555566666666666544433
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=1.1e-10 Score=101.50 Aligned_cols=120 Identities=23% Similarity=0.316 Sum_probs=98.9
Q ss_pred EEecCCccc--cCCC-ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCC
Q 008415 182 LVHAGVELT--EAPK-FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 182 ~~~~~~~~~--~~~~-~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
+...+..+. .+|. ...+.+++.|++.+|.+..++.+..+++|++|++++|.+.. +|. .++.+++|++|++++| .
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ls~N-~ 99 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLNLSGN-K 99 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEECTTS-C
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEECCCC-c
Confidence 444454554 4444 35678999999999999988888999999999999999988 555 4888999999999999 8
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccch---hhhcCCCCCcEEEec
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLF 309 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~ 309 (566)
++.+|. |..++.+++|++|++++| .++.+|. ..++.+++|++|+++
T Consensus 100 i~~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 100 IKDLST-----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCSHHH-----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCChHH-----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 987542 244799999999999999 8888886 458999999999886
No 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.04 E-value=5.1e-11 Score=130.20 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=97.8
Q ss_pred hhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccccC-cchhhHHHHHHHHHHhhHHHhh
Q 008415 14 FDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEIEE--QRPRTRRT-NQVAGWLEDVQKLETEYTELER 90 (566)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~~la~--~~g~l~~~-~~~~~W~~~~~~l~~~~~~~~~ 90 (566)
.+++|++|+++... . ..++..+|++++|+|+ +|+.++.+ .+.++|+.+-..--..+.+++|
T Consensus 300 ~eEA~eLF~~~~g~--~--------------~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSY 363 (1221)
T 1vt4_I 300 PDEVKSLLLKYLDC--R--------------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363 (1221)
T ss_dssp HHHHHHHHHHHHCC--C--------------TTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--C--------------HHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHH
Confidence 47899999876311 1 0223345688999884 45666655 3688898752111124567888
Q ss_pred hchHHHH-HHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc-CCcceecchhHHH
Q 008415 91 DRAQEMD-RLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE-GDDHVKMHDMIRE 165 (566)
Q Consensus 91 ~~L~~~l-K~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~-~~~~~~mHdli~d 165 (566)
+.||++. |+|| +|| |+||+ |+++.++.+|+++|. ..++.++++|+++|||+.. ....|+|||++++
T Consensus 364 d~Lp~eelK~cF-L~L----AIFPed~~I~~elLa~LW~aeGe----edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 364 NVLEPAEYRKMF-DRL----SVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434 (1221)
T ss_dssp HHSCTTHHHHHH-HHT----TSSCTTSCEEHHHHHHHHCSSCS----HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred HhCCHHHHHHHH-HHH----hCCCCCCCCCHHHHHHHhcCCCH----HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHH
Confidence 9999999 9999 999 99998 889999999999981 2289999999999999986 4568999999999
Q ss_pred HHH
Q 008415 166 MSL 168 (566)
Q Consensus 166 l~~ 168 (566)
++.
T Consensus 435 Lr~ 437 (1221)
T 1vt4_I 435 LKV 437 (1221)
T ss_dssp HHH
T ss_pred Hhc
Confidence 663
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=3.2e-10 Score=120.65 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=103.0
Q ss_pred CCCCCccEEE-ecCCcccccchHH-----Hhc--CccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccC
Q 008415 218 PTCPRLVTLL-LGGNRIEEITDGF-----FQS--MSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFL 289 (566)
Q Consensus 218 ~~~~~Lr~L~-l~~~~l~~lp~~~-----~~~--l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l 289 (566)
..+++|+.|+ +..+.+..++.-. +.. ...|++|+|++| .++.+|. ++++++|++|++++| .+
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~--------~~~l~~L~~L~Ls~N-~l 475 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--------LEQLLLVTHLDLSHN-RL 475 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC--------GGGGTTCCEEECCSS-CC
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC--------ccccccCcEeecCcc-cc
Confidence 4567788887 5555433333211 111 125999999999 8877664 589999999999999 89
Q ss_pred CccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceE
Q 008415 290 SIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQS 369 (566)
Q Consensus 290 ~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~ 369 (566)
+.+|.. ++.+++|++|++++|.+.. .+ .++.+++|+.|+++.+....+. .+.....+++|+.
T Consensus 476 ~~lp~~-~~~l~~L~~L~Ls~N~l~~---------------lp-~l~~l~~L~~L~Ls~N~l~~~~-~p~~l~~l~~L~~ 537 (567)
T 1dce_A 476 RALPPA-LAALRCLEVLQASDNALEN---------------VD-GVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVL 537 (567)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCC---------------CG-GGTTCSSCCEEECCSSCCCSSS-TTGGGGGCTTCCE
T ss_pred cccchh-hhcCCCCCEEECCCCCCCC---------------Cc-ccCCCCCCcEEECCCCCCCCCC-CcHHHhcCCCCCE
Confidence 999987 9999999999999998754 22 7889999999999876544331 0233444578999
Q ss_pred EEEecccCCCCCeee--e-ccccccCcceEEE
Q 008415 370 VLVKSGVHTSPPFNV--L-HLAYMENLQKFEL 398 (566)
Q Consensus 370 L~l~~~~~~~~~~~~--~-~l~~~~~L~~L~l 398 (566)
|++++ .. ...... . .+..+++|+.|++
T Consensus 538 L~L~~-N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQG-NS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTT-SG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecC-Cc-CCCCccHHHHHHHHCcccCccCC
Confidence 99987 32 111110 0 1234688888753
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=2.7e-10 Score=125.10 Aligned_cols=109 Identities=25% Similarity=0.328 Sum_probs=94.1
Q ss_pred cccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 196 EEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 196 ~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
.....++.|++.+|.+..++ ....+++|++|+|++|.+..+|.. |+++++|++|+|++| .++.+|.+ +++
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~-------~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAE-------LGS 291 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSS-------GGG
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChh-------hcC
Confidence 34568999999999988876 346889999999999999999987 799999999999999 88766654 589
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
|++|++|+|++| .++.+|.+ |+.|++|++|++++|.+..
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 999999999999 89999988 9999999999999998764
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=2e-10 Score=126.05 Aligned_cols=109 Identities=24% Similarity=0.190 Sum_probs=94.6
Q ss_pred CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415 217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296 (566)
Q Consensus 217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~ 296 (566)
+..+++|++|++++|.+..+|.. +.++++|++|+|++| .++.+|.. +++|++|++|+|++| .++.+|..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~-------~~~l~~L~~L~Ls~N-~l~~lp~~- 288 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAE-------IKNLSNLRVLDLSHN-RLTSLPAE- 288 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGG-------GGGGTTCCEEECTTS-CCSSCCSS-
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChh-------hhCCCCCCEEeCcCC-cCCccChh-
Confidence 56789999999999999999988 568999999999999 88766654 699999999999999 79999998
Q ss_pred hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCc
Q 008415 297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSS 351 (566)
Q Consensus 297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~ 351 (566)
++.|++|++|++++|.+.. .+..++.|++|+.|+++.+..
T Consensus 289 ~~~l~~L~~L~L~~N~l~~---------------lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTT---------------LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGGGTTCSEEECCSSCCCC---------------CCSSTTSCTTCCCEECTTSCC
T ss_pred hcCCCCCCEEECCCCCCCc---------------cChhhhcCCCccEEeCCCCcc
Confidence 9999999999999997754 455689999999999987653
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.02 E-value=6.3e-11 Score=139.01 Aligned_cols=137 Identities=11% Similarity=0.071 Sum_probs=105.5
Q ss_pred hhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHHHH----
Q 008415 13 LFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKLET---- 83 (566)
Q Consensus 13 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l~~---- 83 (566)
-.+++|++|...++... + ++.+++++|+++| |+|+ .|+.++.+. .+|...++.+..
T Consensus 287 ~~~~a~~l~~~~~~~~~---~----------~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 287 GREKGLEILSLFVNMKK---E----------DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp CHHHHHHHHHHHHTSCS---T----------TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHhhCCCh---h----------hCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhh
Confidence 35788888887764321 1 2345577788888 8884 456565443 579999888754
Q ss_pred --------------hhHHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccccHhHHHHHHHHc
Q 008415 84 --------------EYTELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQA 146 (566)
Q Consensus 84 --------------~~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r 146 (566)
.+++++|+.||++.|.|| +|| |+||+ |+++.++.+|.+++ ..++.++++|+++
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~-~~l----~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYY-TDL----SILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNK 421 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHH-HHG----GGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHT
T ss_pred hcccccccchHHHHHHHHHHHHhCCHHHHHHH-HHh----CccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhc
Confidence 234677889999999999 999 99998 99999999997653 1289999999999
Q ss_pred ccccccCC---cceecchhHHHHHHHHhccc
Q 008415 147 CLLEEEGD---DHVKMHDMIREMSLWIACTV 174 (566)
Q Consensus 147 ~ll~~~~~---~~~~mHdli~dl~~~i~~~e 174 (566)
||++.... ..|+|||++|++++..+.++
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99998633 35999999999999987665
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=2e-11 Score=111.76 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=51.6
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL 278 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L 278 (566)
.+++.|++.+|.+..++.+..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+| .++++++|
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~--------~~~~l~~L 117 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS--------GIEKLVNL 117 (198)
T ss_dssp TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH--------HHHHHHHS
T ss_pred CCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC--------ccccCCCC
Confidence 44555555555555544444455555555555555555443 444455555555555 444333 13455555
Q ss_pred cEecccCcccCCccch-hhhcCCCCCcEEEecCCCC
Q 008415 279 RYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 279 ~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~ 313 (566)
++|++++| .++.+|. ..+..+++|++|++.+|..
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 55555555 4554443 1245555555555555443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=2.3e-09 Score=106.29 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=56.2
Q ss_pred ccccccEEEeecCCc-ccccCCCC-CCCccEEEecCCccc--ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415 197 EWEGAKRVSLMGNGI-RSLSEIPT-CPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272 (566)
Q Consensus 197 ~~~~lr~Lsl~~~~~-~~l~~~~~-~~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i 272 (566)
.+.++++|.+.++-- .++..+.. +++|++|++++|.+. ..+. +.++.++++.+..+ .+|+.. +
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~a------F 89 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYA------F 89 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTT------T
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHH------h
Confidence 345778888775311 11111122 788888888888776 2222 12233444444443 233322 3
Q ss_pred hc--------cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 273 KA--------LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 273 ~~--------L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
.+ +.+|+.|++.+ .++.++.+++..+++|+.|++..+..
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred cccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCc
Confidence 44 66677777766 36666666666677777777766554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.3e-09 Score=96.97 Aligned_cols=103 Identities=22% Similarity=0.246 Sum_probs=87.6
Q ss_pred CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCC
Q 008415 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFS 301 (566)
Q Consensus 222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~ 301 (566)
..++++++++.+..+|..+ .++|++|+|++| .++.++.. .++++++|++|++++| .++.+|.+++..++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPG------VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTT------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChh------hhcCcccCCEEECCCC-CcCccChhhccCCC
Confidence 4678999999999999763 489999999999 99887543 3799999999999999 89999988679999
Q ss_pred CCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 302 KLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
+|++|++++|.+.. .....+..+++|+.|+++.+
T Consensus 79 ~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 79 QLTQLSLNDNQLKS--------------IPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCccCE--------------eCHHHhcCCCCCCEEEeCCC
Confidence 99999999998865 23345788899999998865
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=5.8e-09 Score=93.01 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=90.3
Q ss_pred eEEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
..+...+..+..+|... ..++++|++.+|.+..++. +..+++|+.|++++|.+..+|...|.++++|++|+|++| .
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-H 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-c
Confidence 44566666677777532 3789999999999998853 688999999999999999999887899999999999999 9
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~ 295 (566)
++.+|... ++++++|++|++++| .+...|.+
T Consensus 93 l~~l~~~~------~~~l~~L~~L~L~~N-~~~c~~~~ 123 (174)
T 2r9u_A 93 LKSIPRGA------FDNLKSLTHIYLYNN-PWDCECRD 123 (174)
T ss_dssp CCCCCTTT------TTTCTTCSEEECCSS-CBCTTBGG
T ss_pred cceeCHHH------hccccCCCEEEeCCC-Cccccccc
Confidence 98887654 789999999999999 77777654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=9e-11 Score=107.37 Aligned_cols=124 Identities=24% Similarity=0.272 Sum_probs=97.3
Q ss_pred cccEEEeecC--Cccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415 200 GAKRVSLMGN--GIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE 276 (566)
Q Consensus 200 ~lr~Lsl~~~--~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~ 276 (566)
.++...+.+. .++.++ .+..+++|++|++++|.+..+| . ++.+++|++|++++| .++.+|.. ++.++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~-------~~~~~ 93 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENL-------DAVAD 93 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSH-------HHHHH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-Ccccccch-------hhcCC
Confidence 4555555543 444444 3577899999999999888888 4 889999999999999 88766643 57889
Q ss_pred cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415 277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR 349 (566)
Q Consensus 277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 349 (566)
+|++|++++| .++.+|. ++.+++|++|++.+|.+... ..+..+..+++|+.|++..+
T Consensus 94 ~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~-------------~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 94 TLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNW-------------GEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HCSEEEEEEE-ECCCHHH--HHHHHHSSEEEESEEECCCH-------------HHHHHHTTTTTCSEEEECSC
T ss_pred cCCEEECcCC-cCCcCCc--cccCCCCCEEECCCCcCCch-------------hHHHHHhcCCCCCEEEecCC
Confidence 9999999999 8999884 88999999999999877541 23357888999999888854
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=2.9e-09 Score=106.40 Aligned_cols=104 Identities=20% Similarity=0.334 Sum_probs=88.1
Q ss_pred EEEeecC-CcccccCCCCCCCccEEEecC-CcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415 203 RVSLMGN-GIRSLSEIPTCPRLVTLLLGG-NRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280 (566)
Q Consensus 203 ~Lsl~~~-~~~~l~~~~~~~~Lr~L~l~~-~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~ 280 (566)
.+...++ .+..+|.+..+.+|+.|+|++ |.+..++...|+.+++|++|+|++| .++.+|+.. +++|++|++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~------~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA------FHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG------GGSCSCCCE
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH------hcCCcCCCE
Confidence 3566666 788888888888999999996 8999999777999999999999999 998877543 799999999
Q ss_pred ecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
|+|++| .++.+|.+.+..+. |++|++.+|...-
T Consensus 85 L~l~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFN-ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSS-CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCC-ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999 89999987455555 9999999987753
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.7e-09 Score=102.95 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=35.6
Q ss_pred CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc
Q 008415 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~ 264 (566)
|++|+.|.+.. .+..+++..|.++++|+.|+++++ .+..+++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~ 142 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPE 142 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-Cccccchh
Confidence 89999999988 788888888999999999999988 77666654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=2.2e-07 Score=94.38 Aligned_cols=119 Identities=16% Similarity=0.239 Sum_probs=79.6
Q ss_pred cccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415 200 GAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK 277 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~ 277 (566)
.++.+.+.. .++.++ .+..+ +|+.+.+..+ +..++...|.++ +|+.+.+.. .++.++... +.++.+
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~a------F~~c~~ 181 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDI------FYYCYN 181 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSST------TTTCTT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHH------hhCccc
Confidence 444444432 344443 23454 6888888765 777877777775 688888875 466666543 788889
Q ss_pred CcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 278 LRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 278 L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
|+.+++.++ .++.+|.+++. ..+|+.+.+..+ +.. -....+.++.+|+.+.+.
T Consensus 182 L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~--------------I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 182 LKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKE--------------IGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCE--------------ECTTTTTTCTTCCCEECC
T ss_pred CCeeecCCC-cceEechhhEe-ecccCEEEeCCc-hhe--------------ehhhHhhCCCCCCEEecC
Confidence 999999888 78888887565 588888888744 222 123345666777776665
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=9.8e-07 Score=89.53 Aligned_cols=266 Identities=9% Similarity=0.005 Sum_probs=151.2
Q ss_pred CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcC
Q 008415 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISG 299 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~ 299 (566)
+..++.+.+... ++.++...|.++ +|+.+.+..+ ++.++..- +.+ .+|+.+.+.. .++.++.+++..
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~a------F~~-~~L~~i~lp~--~l~~I~~~aF~~ 178 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMA------FFN-STVQEIVFPS--TLEQLKEDIFYY 178 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTT------TTT-CCCCEEECCT--TCCEECSSTTTT
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHh------cCC-CCceEEEeCC--CccEehHHHhhC
Confidence 466777776653 667777667775 6888887654 66665433 455 3688888875 477787766888
Q ss_pred CCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCC
Q 008415 300 FSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS 379 (566)
Q Consensus 300 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 379 (566)
+++|+.+++..+.+... ....+. ..+|+.+.+.. +...++. .....+.+|+.+.+... .
T Consensus 179 c~~L~~l~l~~n~l~~I--------------~~~aF~-~~~L~~l~lp~-~l~~I~~--~aF~~~~~L~~l~l~~~---l 237 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKL--------------PASTFV-YAGIEEVLLPV-TLKEIGS--QAFLKTSQLKTIEIPEN---V 237 (401)
T ss_dssp CTTCCEEECTTSCCSEE--------------CTTTTT-TCCCSEEECCT-TCCEECT--TTTTTCTTCCCEECCTT---C
T ss_pred cccCCeeecCCCcceEe--------------chhhEe-ecccCEEEeCC-chheehh--hHhhCCCCCCEEecCCC---c
Confidence 88888888877655431 111122 35666666641 1111111 01122346666666541 1
Q ss_pred CCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCC----CCCch--hhccCCcceEeE
Q 008415 380 PPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKA----KDLTW--LVFVQNLKVLRI 453 (566)
Q Consensus 380 ~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l----~~l~~--l~~l~~L~~L~L 453 (566)
..+....+.. .+|+.+.+.+ .+..++.. ....+++|+.+.+.+...- ..++. +..+++|+.+.|
T Consensus 238 ~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~--------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 238 STIGQEAFRE-SGITTVKLPN-GVTNIASR--------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CEECTTTTTT-CCCSEEEEET-TCCEECTT--------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred cCcccccccc-CCccEEEeCC-CccEEChh--------HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 1222223444 5777777733 23333221 1235577888877653211 11222 666788888888
Q ss_pred ecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccEEeecCCCCCCCCCCCCcccc-
Q 008415 454 GDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKKIDVCHCPQLKKLPLNSSSAK- 531 (566)
Q Consensus 454 ~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i~~C~~L~~lP~~~~~~l- 531 (566)
.+ .++.|.. ..+..+++|+.+.|.. +++.+.... ..+ +|+.+.+.+. .+..++.+.-..+
T Consensus 308 ~~--~i~~I~~------------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 308 PE--SIRILGQ------------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFP 369 (401)
T ss_dssp CT--TCCEECT------------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSC
T ss_pred CC--ceEEEhh------------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCC
Confidence 63 4555543 2456678888888853 466665432 334 8999999874 5666665543332
Q ss_pred CCcEEEechhhhhhcc
Q 008415 532 ERRVVIEGEKKWWEEL 547 (566)
Q Consensus 532 ~~L~i~~~~~~~~~~l 547 (566)
..+..+..+....+..
T Consensus 370 ~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 370 DDITVIRVPAESVEKY 385 (401)
T ss_dssp TTCCEEEECGGGHHHH
T ss_pred CCccEEEeCHHHHHHh
Confidence 4566666665544433
No 147
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.54 E-value=3e-08 Score=106.62 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=98.2
Q ss_pred hhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHHHH-----
Q 008415 14 FDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKLET----- 83 (566)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l~~----- 83 (566)
.+++|++|...++... . ...+.+.+|+++| |+|+ .|+.++.+ ..+|..+++.+..
T Consensus 288 ~~ea~~L~~~~~~~~~---~----------~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 288 KEKGLEILSLFVNMKK---A----------DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp HHHHHHHHHHHHTSCG---G----------GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHhCCCc---c----------cccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHH
Confidence 4678888877664311 1 1123456667777 8774 34555543 3479998887763
Q ss_pred -------------hhHHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccccHhHHHHHHHHcc
Q 008415 84 -------------EYTELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQAC 147 (566)
Q Consensus 84 -------------~~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ 147 (566)
.+.+.+++.||++.|.|| +|| |+||+ |+.+.++..|.+++ ..+..++++|+++|
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l-~~l----a~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYY-TDL----SILQKDVKVPTKVLCILWDMET-----EEVEDILQEFVNKS 422 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH-HHG----GGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTT
T ss_pred hhhccccchHHHHHHHHHHHHhCCHHHHHHH-HHc----cccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHHhCc
Confidence 234567888999999999 999 99998 88899999997542 12888999999999
Q ss_pred ccccc---CCcceecchhHHHHHHHHhc
Q 008415 148 LLEEE---GDDHVKMHDMIREMSLWIAC 172 (566)
Q Consensus 148 ll~~~---~~~~~~mHdli~dl~~~i~~ 172 (566)
|++.. ....|+|||++|++++..+.
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 99864 23479999999999997743
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=2.7e-07 Score=91.97 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=85.5
Q ss_pred EEecCC-ccccCCCccccccccEEEeec-CCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415 182 LVHAGV-ELTEAPKFEEWEGAKRVSLMG-NGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257 (566)
Q Consensus 182 ~~~~~~-~~~~~~~~~~~~~lr~Lsl~~-~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~ 257 (566)
+...+. .+..+|.+....+++.|++++ |.+..++. +..+++|+.|+|++|.+..+++..|+++++|++|+|++| .
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 455555 677788766678899999996 99998874 789999999999999999998877999999999999999 9
Q ss_pred CccccccccccCcchhccccCcEecccCcccCCcc
Q 008415 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSII 292 (566)
Q Consensus 258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l 292 (566)
++.+|..+ +..+. |++|+|.+| .+...
T Consensus 92 l~~~~~~~------~~~~~-L~~l~l~~N-~~~c~ 118 (347)
T 2ifg_A 92 LESLSWKT------VQGLS-LQELVLSGN-PLHCS 118 (347)
T ss_dssp CSCCCSTT------TCSCC-CCEEECCSS-CCCCC
T ss_pred cceeCHHH------cccCC-ceEEEeeCC-CccCC
Confidence 99888655 45555 999999999 66643
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=1.4e-07 Score=94.82 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=16.0
Q ss_pred CCccEEEecCCccccc-chHHHhcCccCCEEecCCCCCCc
Q 008415 221 PRLVTLLLGGNRIEEI-TDGFFQSMSTLRVLSLRINISLR 259 (566)
Q Consensus 221 ~~Lr~L~l~~~~l~~l-p~~~~~~l~~Lr~L~L~~~~~i~ 259 (566)
++|++|++++|.+... ...+...+++|++|+|++| .++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~ 139 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLG 139 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCC
Confidence 4555555555544321 1111223344555555555 443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=2.6e-07 Score=92.89 Aligned_cols=166 Identities=17% Similarity=0.095 Sum_probs=103.9
Q ss_pred CCCccEEEecCCcccccchHHHh-----cCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch
Q 008415 220 CPRLVTLLLGGNRIEEITDGFFQ-----SMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH 294 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~~lp~~~~~-----~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~ 294 (566)
+++|+.|++++|.+.......+. ...+|++|+|++| .++.-. +..-...+.+|++|+|++| .++..+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~-----~~~l~~~L~~L~~L~Ls~n-~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAG-----LRTLLPVFLRARKLGLQLN-SLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHH-----HHHTHHHHHTEEEEECCSS-CCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHH-----HHHHHHHHHhccHhhcCCC-CCCHHHH
Confidence 46788888888877643332232 2368999999999 775311 1111345678999999999 7765443
Q ss_pred hhh-----cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccc--hhccccCCcccccc
Q 008415 295 QLI-----SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG--VQNFLKYPKLVSIT 367 (566)
Q Consensus 295 ~~i-----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~--~~~~~~~~~~~~~L 367 (566)
..+ ...++|++|++++|.+... ........+...++|+.|+++.+.... ...+........+|
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~----------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAA----------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHH----------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChH----------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 223 3568899999999877531 011234455778889999988765432 22233333334689
Q ss_pred eEEEEecccCCCCCeeee----ccccccCcceEEEeccccc
Q 008415 368 QSVLVKSGVHTSPPFNVL----HLAYMENLQKFELESCNLE 404 (566)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~ 404 (566)
+.|++++ +. ....... .+...++|++|++++|.+.
T Consensus 214 ~~L~Ls~-N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 214 QELNVAY-NG-AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CEEECCS-SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CeEECCC-CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 9999987 42 2221111 2445688999999998843
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=3.7e-06 Score=73.77 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=61.1
Q ss_pred CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc----ccCcEecccCcccCCccchh
Q 008415 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL----EKLRYLNLDYTRFLSIIPHQ 295 (566)
Q Consensus 220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L----~~L~~L~L~~~~~l~~lP~~ 295 (566)
-.+|+.|++++|.++...-..+..+++|+.|+|++|..|+.-- + ..+..+ ++|++|+|++|.+++.---.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--L----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--L----ERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--H----HHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--H----HHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 3578889999887765433346788899999999885565311 1 113443 36888888888767653322
Q ss_pred hhcCCCCCcEEEecCCCCcc
Q 008415 296 LISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 296 ~i~~L~~L~~L~l~~~~~~~ 315 (566)
.+.++++|++|++++|....
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 36778888888888887543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=9.1e-06 Score=80.96 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=88.2
Q ss_pred HhcCccCCEEecCCCCCCcccccc-c--cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccc
Q 008415 241 FQSMSTLRVLSLRINISLRKLPSG-I--RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVT 317 (566)
Q Consensus 241 ~~~l~~Lr~L~L~~~~~i~~lp~~-i--~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~ 317 (566)
+.++++||.|.+... ......-+ + ..++.-+..+++|+.|+|++|..+ .+|. +. +++|++|++..|.+..
T Consensus 135 ~~~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~-- 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI-DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPD-- 207 (362)
T ss_dssp HHHHTTCSEEEECCC-CTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCH--
T ss_pred hhhcchhhheeecCc-chhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCCh--
Confidence 445667777777544 22110000 0 123344566778888888777323 3444 43 7788888887776543
Q ss_pred cccccccccCccchHhhhc--CCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcce
Q 008415 318 EEEGNVLCEDAEPLMKELL--GSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQK 395 (566)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~--~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 395 (566)
..+..+. .+++|+.|+++......... ... ..+. .......+++|+.
T Consensus 208 ------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~---~~l~--------------~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 208 ------------SVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM---NVFR--------------PLFSKDRFPNLKW 256 (362)
T ss_dssp ------------HHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG---GGTG--------------GGSCTTTCTTCCE
T ss_pred ------------HHHHHHHHccCCCCcEEEEeccccccccc--hhH---HHHH--------------HHHhcCCCCCcCE
Confidence 3444443 67778777775321000000 000 0000 0001124577888
Q ss_pred EEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCC-----Cc-hhhccCCcceEeEeccc
Q 008415 396 FELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-----LT-WLVFVQNLKVLRIGDCY 457 (566)
Q Consensus 396 L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~ 457 (566)
|.+.+|. ...... .+.....+++|++|+|+.+ .+.+ +. .+..+++|+.|+|++|.
T Consensus 257 L~L~~~~i~~~~~~------~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 257 LGIVDAEEQNVVVE------MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EEEESCTTHHHHHH------HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred EeCCCCCCchHHHH------HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 8887766 221110 0111124678888888653 4544 11 24567888888887775
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.94 E-value=0.00019 Score=72.65 Aligned_cols=107 Identities=17% Similarity=0.341 Sum_probs=53.1
Q ss_pred cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc-----------
Q 008415 198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG----------- 264 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~----------- 264 (566)
+.+++.+.+.. .++.+. ++..|.+|+.+.+..+ +..++...|.++..|+.+.+..+ +..++..
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccccccc
Confidence 34556665542 344443 3456666666666543 55555555666666665544322 2211111
Q ss_pred ----cccc-CcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecC
Q 008415 265 ----IRGL-PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310 (566)
Q Consensus 265 ----i~~L-P~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 310 (566)
+..+ ...+.++.+|+.+.+.++ +..++.+++..+.+|+.+.+..
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 0001 112445556666666543 4555555556666666666544
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.6e-05 Score=69.72 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=22.2
Q ss_pred ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
.+|++||+++| .++..--..+.++++|++|++.+|..
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCc
Confidence 35777777777 45543222256666777777776653
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=1.1e-05 Score=76.24 Aligned_cols=90 Identities=24% Similarity=0.220 Sum_probs=60.8
Q ss_pred CCCCCccE--EEecCCcccccch---HHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCcc
Q 008415 218 PTCPRLVT--LLLGGNRIEEITD---GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSII 292 (566)
Q Consensus 218 ~~~~~Lr~--L~l~~~~l~~lp~---~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l 292 (566)
...+.|+. +++..|....++. ....++++|+.|+|++| .++.++. +|..++.+++|++|+|++| .++.+
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~----l~~~~~~l~~L~~L~Ls~N-~i~~~ 211 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDD----MSSIVQKAPNLKILNLSGN-ELKSE 211 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGG----GTTHHHHSTTCCEEECTTS-CCCSG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCcc----chhHHhhCCCCCEEECCCC-ccCCc
Confidence 33344544 4555553333332 12356888999999999 8876642 4555788899999999998 78877
Q ss_pred chhhhcCCC--CCcEEEecCCCCcc
Q 008415 293 PHQLISGFS--KLEVLRLFGCGFWV 315 (566)
Q Consensus 293 P~~~i~~L~--~L~~L~l~~~~~~~ 315 (566)
.. +..+. +|++|++.+|.+..
T Consensus 212 ~~--l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 212 RE--LDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp GG--GGGGTTSCCSEEECTTSTTGG
T ss_pred hh--hhhcccCCcceEEccCCcCcc
Confidence 44 55555 89999999888753
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.69 E-value=0.00044 Score=69.84 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=52.3
Q ss_pred ccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCC
Q 008415 233 IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312 (566)
Q Consensus 233 l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 312 (566)
...+....|.++++|+.+.+..+ +..++... +.++.+|+.+++..+ ++.++..++..+..|+.+.+..+.
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~------F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDS--METLHNGL------FSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTT------TTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccchhhhcccCCCcEEecCCc--cceecccc------ccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 34455666888999999998754 45565544 778889999998765 778887778888899888876543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=5.3e-05 Score=71.58 Aligned_cols=82 Identities=29% Similarity=0.367 Sum_probs=63.2
Q ss_pred CCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCccccccccccCcchhccc--cCcEecccCcccCC-cc
Q 008415 218 PTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE--KLRYLNLDYTRFLS-II 292 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~--~L~~L~L~~~~~l~-~l 292 (566)
..+++|++|+|++|.+..++. ..++.+++|++|+|++| .++.+.. +..+. +|++|+|++| .+. .+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--------l~~l~~l~L~~L~L~~N-pl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--------LDKIKGLKLEELWLDGN-SLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--------GGGGTTSCCSEEECTTS-TTGGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--------hhhcccCCcceEEccCC-cCcccc
Confidence 468899999999998876552 33789999999999999 9987632 34444 9999999999 454 34
Q ss_pred c------hhhhcCCCCCcEEEec
Q 008415 293 P------HQLISGFSKLEVLRLF 309 (566)
Q Consensus 293 P------~~~i~~L~~L~~L~l~ 309 (566)
| ..++..+++|+.|+-.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 4 2347789999998754
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=3.9e-05 Score=68.67 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCCCCccEEEecCC-cccc-----cchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc
Q 008415 218 PTCPRLVTLLLGGN-RIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI 291 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~-~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~ 291 (566)
...+.|++|++++| .+.. +... +...++|++|+|++| .+..-. ...+...+...++|++|+|++| .+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g--~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPV--AFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHH--HHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHH--HHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 44566666666666 5432 2222 455566777777766 554211 0122333444566677777666 5554
Q ss_pred -----cchhhhcCCCCCcEEEe--cCCCCc
Q 008415 292 -----IPHQLISGFSKLEVLRL--FGCGFW 314 (566)
Q Consensus 292 -----lP~~~i~~L~~L~~L~l--~~~~~~ 314 (566)
+... +...++|++|++ .+|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCC
Confidence 2333 555666777777 555554
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=4.2e-05 Score=68.47 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=82.1
Q ss_pred ccccEEEeecC-Cccc-----c-cCCCCCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCCCCCcccccccc
Q 008415 199 EGAKRVSLMGN-GIRS-----L-SEIPTCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIR 266 (566)
Q Consensus 199 ~~lr~Lsl~~~-~~~~-----l-~~~~~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~ 266 (566)
..+++|++.+| .+.. + ..+...++|++|++++|.+.. +... +...+.|++|+|++| .|..- +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N-~i~~~--g~~ 111 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESN-FISGS--GIL 111 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSS-CCCHH--HHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCC-cCCHH--HHH
Confidence 68999999998 7754 1 123667899999999998753 3333 567789999999999 88741 112
Q ss_pred ccCcchhccccCcEecc--cCcccCCc-----cchhhhcCCCCCcEEEecCCCCcc
Q 008415 267 GLPQELKALEKLRYLNL--DYTRFLSI-----IPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 267 ~LP~~i~~L~~L~~L~L--~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
.+...+...++|++|+| ++| .+.. +... +...++|++|++.+|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence 34455677889999999 778 6764 3333 6677999999999887643
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.42 E-value=0.0068 Score=61.02 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=74.8
Q ss_pred cccEEEeecCCccccc--CCCCCCCccEEEecCC---cccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415 200 GAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGN---RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274 (566)
Q Consensus 200 ~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~---~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~ 274 (566)
.++.+.+-. .++.+. ++..|.+|+.+.+..+ .+..+....|..+.+|+.+.+..+ ++.++... +..
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~a------F~~ 135 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEA------FHH 135 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTT------TTT
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhh------hhh
Confidence 477787754 355554 4688999999999876 477888888888998888776543 55555433 677
Q ss_pred cccCcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311 (566)
Q Consensus 275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 311 (566)
+.+|+.+.+... +..++..++..+.+|+.+.+..+
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hcccccccccce--eeeecccceecccccccccccce
Confidence 888999888754 67777776888888888888654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.011 Score=59.35 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCCCC-CccEEEecCCcccccchHHHhcCccCCEEecCCC--CCCccccccccccCcchhccccCcEecccCcccCCccc
Q 008415 217 IPTCP-RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN--ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIP 293 (566)
Q Consensus 217 ~~~~~-~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~--~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP 293 (566)
+..++ .|+++.+... ++.+....|.++.+|+.+.+..+ ..++.++..- +..+.+|+.+.+..+ ++.++
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a------F~~c~~L~~i~~~~~--~~~I~ 129 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA------FMFCSELTDIPILDS--VTEID 129 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT------TTTCTTCCBCGGGTT--CSEEC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh------chhcccceeeccCCc--cceeh
Confidence 45564 5999999764 78888888999999999999765 1355555433 678889999888764 78888
Q ss_pred hhhhcCCCCCcEEEecCC
Q 008415 294 HQLISGFSKLEVLRLFGC 311 (566)
Q Consensus 294 ~~~i~~L~~L~~L~l~~~ 311 (566)
..++..+.+|+.+.+...
T Consensus 130 ~~aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG 147 (394)
T ss_dssp TTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce
Confidence 877899999999999754
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.35 E-value=0.00047 Score=68.49 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=49.6
Q ss_pred ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHh--cCccCCEEecCCCC-------CCccccccccccC
Q 008415 199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQ--SMSTLRVLSLRINI-------SLRKLPSGIRGLP 269 (566)
Q Consensus 199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~--~l~~Lr~L~L~~~~-------~i~~lp~~i~~LP 269 (566)
++++.|.+.++.-..++.. .+++|+.|.+..+.+..-.-..+. .+++|++|+|+.+. .+..+...+
T Consensus 172 P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l---- 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF---- 246 (362)
T ss_dssp TTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS----
T ss_pred CCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH----
Confidence 4666666665532223332 356677777666654321111122 56667777664210 011111100
Q ss_pred cchhccccCcEecccCcccCCc-cchhhh---cCCCCCcEEEecCCCC
Q 008415 270 QELKALEKLRYLNLDYTRFLSI-IPHQLI---SGFSKLEVLRLFGCGF 313 (566)
Q Consensus 270 ~~i~~L~~L~~L~L~~~~~l~~-lP~~~i---~~L~~L~~L~l~~~~~ 313 (566)
..+.+++|++|++++| .+.. .+.. + ..+++|++|+++.|.+
T Consensus 247 -~~~~~p~Lr~L~L~~~-~i~~~~~~~-la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 247 -SKDRFPNLKWLGIVDA-EEQNVVVEM-FLESDILPQLETMDISAGVL 291 (362)
T ss_dssp -CTTTCTTCCEEEEESC-TTHHHHHHH-HHHCSSGGGCSEEECCSSCC
T ss_pred -hcCCCCCcCEEeCCCC-CCchHHHHH-HHhCccCCCCCEEECCCCCC
Confidence 0124566666666666 3332 1111 2 2456666666665554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.94 E-value=0.01 Score=49.17 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=37.0
Q ss_pred EEecCCCCCCc--cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415 249 VLSLRINISLR--KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313 (566)
Q Consensus 249 ~L~L~~~~~i~--~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 313 (566)
+++.++. .++ .+|..+ | .+|++|+|++| .|+.||.+++..+++|++|++.+|..
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l---p------~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF---P------VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC---C------TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCC---C------cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5666666 666 666432 2 35777777777 77777777677777888888877654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.84 E-value=0.0091 Score=49.52 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=27.7
Q ss_pred EEEeecCCcc--cccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCC
Q 008415 203 RVSLMGNGIR--SLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN 255 (566)
Q Consensus 203 ~Lsl~~~~~~--~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~ 255 (566)
+++.++++++ .+|.. -.++|+.|+|++|.+..+|..+|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444455554 44421 1234566666666666565555555666666666655
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.56 E-value=0.026 Score=56.23 Aligned_cols=103 Identities=14% Similarity=0.226 Sum_probs=73.0
Q ss_pred cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415 198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275 (566)
Q Consensus 198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L 275 (566)
...++.+.+..+ +..+. .+..+..|+.+.+..+ +..+....|.++.+|+.+.+.. .++.++... +.++
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a------F~~c 285 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLL------CSGC 285 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTT------TTTC
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccc------cccc
Confidence 345666665432 33332 3467788888888765 6677777788888888888864 366666544 6788
Q ss_pred ccCcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415 276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311 (566)
Q Consensus 276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 311 (566)
.+|+.+.+.++ .++.++..++.++.+|+.+.+..+
T Consensus 286 ~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 286 SNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccc-ccceehhhhhcCCCCCCEEEcCcc
Confidence 88888888877 688888777888888888888644
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.92 E-value=0.041 Score=54.82 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=79.9
Q ss_pred CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415 217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296 (566)
Q Consensus 217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~ 296 (566)
+..+.+|+.+.+..+ +..++...+..+..|+.+.+..+ ++.++... +.++.+|+.+.+... ++.++..+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~a------F~~~~~l~~i~l~~~--i~~i~~~a 281 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFL------LQNCTALKTLNFYAK--VKTVPYLL 281 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTT------TTTCTTCCEEEECCC--CSEECTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccc------cceeehhcccccccc--ceeccccc
Confidence 466788898888655 66677777888999999998754 66665543 678889999999764 88898877
Q ss_pred hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
+..+.+|+.+.+.++.+.. -....+.++.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~--------------I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIET--------------LEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCCE--------------ECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccce--------------ehhhhhcCCCCCCEEEcC
Confidence 9999999999998765543 123346677788877775
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.83 E-value=1.2 Score=39.49 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=41.2
Q ss_pred CCccEEEecCC-cccc-----cchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc---
Q 008415 221 PRLVTLLLGGN-RIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI--- 291 (566)
Q Consensus 221 ~~Lr~L~l~~~-~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~--- 291 (566)
+.|+.|+++++ .+.. +-+. +..-..|+.|+|++| .|..--. ..+-..+..=+.|++|+|++| .|..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n-~igd~ga--~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEA--RGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHH--TTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCC-CCChHHH--HHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 45566666553 3321 2222 444556666666666 5542110 112222333355666666666 4542
Q ss_pred --cchhhhcCCCCCcEEEecCC
Q 008415 292 --IPHQLISGFSKLEVLRLFGC 311 (566)
Q Consensus 292 --lP~~~i~~L~~L~~L~l~~~ 311 (566)
|-.. +..=+.|++|++.++
T Consensus 116 ~ala~a-L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRS-TLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHH-TTTTCCCSEEECCCC
T ss_pred HHHHHH-HhhCCceeEEECCCC
Confidence 1121 344455777777644
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.66 E-value=0.84 Score=40.41 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=55.7
Q ss_pred HhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc-----cchhhhcCCCCCcEEEecCCCCcc
Q 008415 241 FQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-----IPHQLISGFSKLEVLRLFGCGFWV 315 (566)
Q Consensus 241 ~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~~~ 315 (566)
+.+-+.|+.|+|+++..|.. .+...+-..+..=+.|+.|+|++| .+.. |... +..=+.|++|++.+|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd--~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~a-L~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSK--ERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIEL-IETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCH--HHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHH-HHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCH--HHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHH-HhcCCccCeEecCCCcCCH
Confidence 56677899999987424432 111122233455578999999998 6653 3332 5566789999999888754
Q ss_pred cccccccccccCccchHhhhcCCCCCceEEEE
Q 008415 316 VTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT 347 (566)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 347 (566)
. ......+.|..=+.|+.|++.
T Consensus 113 ~----------Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 113 E----------LLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp H----------HHHHHHHHTTTTCCCSEEECC
T ss_pred H----------HHHHHHHHHhhCCceeEEECC
Confidence 1 011233345555556666665
No 169
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=44.74 E-value=38 Score=18.62 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=15.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Q 008415 35 LRVLETELH-KLTRARADLKTKVE 57 (566)
Q Consensus 35 ~~~l~~~~~-~L~~i~~~i~~k~~ 57 (566)
+...+.++. +|+.||++|.+-+|
T Consensus 6 lrkfrnkikeklkkigqkiqgllp 29 (32)
T 1lyp_A 6 LRKFRNKIKEKLKKIGQKIQGLLP 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444554 78999999987765
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.41 E-value=26 Score=26.81 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=25.4
Q ss_pred hhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311 (566)
Q Consensus 272 i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 311 (566)
+.++.+|+.+.|..+ ++.|...++..+.+|+.+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 556666666666654 66666666777777777777653
No 171
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=25.67 E-value=46 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.6
Q ss_pred ccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415 110 VSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE 152 (566)
Q Consensus 110 ~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~ 152 (566)
..||. +.-.++|.+.+..+.+..+..|..+-..|++.++|+++
T Consensus 32 ~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~i~hV 75 (109)
T 1uhw_A 32 KVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGYLQPA 75 (109)
T ss_dssp CEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTSSEEC
T ss_pred EEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCeEEeC
Confidence 55666 77889999999988887666699999999999999987
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.73 E-value=45 Score=25.38 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=15.8
Q ss_pred CCCCCccEEEecCCcccccchHHHhcCccCCEEecC
Q 008415 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLR 253 (566)
Q Consensus 218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~ 253 (566)
..|..|+.+.+-.+ ++.+....|.++.+|+.+.+.
T Consensus 17 ~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 17 AGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44445555444433 333444344444444444444
Done!