Query 008418
Match_columns 566
No_of_seqs 297 out of 1436
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 1.1E-35 2.5E-40 306.8 15.5 230 64-357 5-241 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 1E-35 2.2E-40 306.1 12.3 216 73-357 13-232 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 6.5E-34 1.4E-38 269.8 10.6 129 217-357 44-173 (174)
4 KOG1314 DHHC-type Zn-finger pr 100.0 5.6E-31 1.2E-35 268.8 10.9 140 220-360 90-229 (414)
5 COG5273 Uncharacterized protei 100.0 2.9E-30 6.3E-35 267.9 16.4 133 217-362 105-237 (309)
6 KOG1313 DHHC-type Zn-finger pr 100.0 5.8E-30 1.3E-34 254.5 11.7 147 220-366 101-254 (309)
7 KOG1312 DHHC-type Zn-finger pr 99.9 1.1E-24 2.4E-29 218.0 10.2 63 220-282 147-209 (341)
8 KOG0509 Ankyrin repeat and DHH 99.9 3.6E-23 7.8E-28 225.6 9.2 68 222-289 421-488 (600)
9 COG5273 Uncharacterized protei 92.8 0.53 1.1E-05 49.8 9.1 130 217-361 119-248 (309)
10 KOG1311 DHHC-type Zn-finger pr 90.4 0.99 2.1E-05 47.1 8.1 42 234-275 112-164 (299)
11 KOG1315 Predicted DHHC-type Zn 90.4 2.3 4.9E-05 45.1 10.7 32 234-265 108-139 (307)
12 PF01529 zf-DHHC: DHHC palmito 86.9 3 6.6E-05 39.3 8.2 59 219-288 60-118 (174)
13 KOG1314 DHHC-type Zn-finger pr 78.7 13 0.00029 40.0 9.6 47 219-276 103-149 (414)
14 KOG0509 Ankyrin repeat and DHH 69.7 2.1 4.4E-05 48.9 1.1 59 220-279 324-382 (600)
15 PF13240 zinc_ribbon_2: zinc-r 65.1 3.3 7.2E-05 27.1 0.9 21 223-243 1-21 (23)
16 PRK04136 rpl40e 50S ribosomal 51.7 7.9 0.00017 30.0 1.1 24 220-243 13-36 (48)
17 PF12773 DZR: Double zinc ribb 49.2 15 0.00032 27.9 2.3 35 220-254 11-48 (50)
18 KOG1313 DHHC-type Zn-finger pr 47.8 73 0.0016 33.5 7.7 58 219-287 114-171 (309)
19 PF07010 Endomucin: Endomucin; 46.5 24 0.00052 35.9 3.9 26 113-138 197-222 (259)
20 PF13248 zf-ribbon_3: zinc-rib 46.2 11 0.00023 25.3 1.0 22 222-243 3-24 (26)
21 PRK15103 paraquat-inducible me 39.5 3.8E+02 0.0082 29.8 12.3 33 219-251 219-251 (419)
22 PTZ00303 phosphatidylinositol 38.6 18 0.00038 42.7 1.8 22 222-243 461-489 (1374)
23 PF06906 DUF1272: Protein of u 36.5 14 0.00031 29.6 0.5 35 224-261 8-50 (57)
24 KOG3488 Dolichol phosphate-man 34.4 1.4E+02 0.0029 25.3 5.8 15 114-128 57-71 (81)
25 PF10571 UPF0547: Uncharacteri 33.0 24 0.00051 23.9 1.0 21 223-243 2-22 (26)
26 TIGR00155 pqiA_fam integral me 30.9 6.6E+02 0.014 27.7 12.4 32 220-251 214-246 (403)
27 PF01363 FYVE: FYVE zinc finge 30.0 23 0.00049 28.6 0.7 26 220-245 8-35 (69)
28 PF12666 PrgI: PrgI family pro 29.0 1.2E+02 0.0027 25.8 5.2 30 77-106 17-46 (93)
29 KOG4399 C2HC-type Zn-finger pr 28.7 13 0.00028 38.5 -1.1 44 217-260 200-260 (325)
30 KOG3183 Predicted Zn-finger pr 26.9 27 0.00059 35.7 0.8 12 245-256 38-49 (250)
31 KOG2927 Membrane component of 26.2 46 0.001 36.0 2.4 18 119-136 235-252 (372)
32 PF12773 DZR: Double zinc ribb 25.1 48 0.001 25.0 1.7 24 219-242 27-50 (50)
33 PF01020 Ribosomal_L40e: Ribos 24.5 41 0.0009 26.6 1.2 25 220-244 16-42 (52)
34 smart00064 FYVE Protein presen 23.5 54 0.0012 26.2 1.8 25 221-245 10-36 (68)
35 KOG1842 FYVE finger-containing 22.8 30 0.00065 38.4 0.2 25 220-244 179-205 (505)
36 COG1552 RPL40A Ribosomal prote 20.5 23 0.00051 27.6 -0.8 24 220-243 13-36 (50)
37 PF12794 MscS_TM: Mechanosensi 20.4 9.9E+02 0.021 25.6 11.1 23 344-366 252-274 (340)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=306.81 Aligned_cols=230 Identities=24% Similarity=0.397 Sum_probs=152.2
Q ss_pred CCCcccccccccCcchhhHHHHHHHHHHHhh--hhhhhhccchhhhH-HH--HHHHHHHHHHHHHHHHhhhhee--eCCC
Q 008418 64 SPMNTRRHGWQRPLHPLQMVGMAVYSCLVVA--FYTFLGLFLGNRIA-EF--TVTSIFSFVALSVIFLFIRCTA--IDPT 136 (566)
Q Consensus 64 ~~~~~RrhGWqlPlhplQvVai~Vf~lL~~a--fYvf~~PfLg~~i~-~~--i~~~Iys~L~l~v~~lYi~c~~--iDPG 136 (566)
.....++.||.....|..+..++.++++.++ |+++..++++.... .. ...+++..+.+.. +...+.. +|||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~if~~~~~~~--~~~~~~~~~sdpg 82 (299)
T KOG1311|consen 5 LGNRIPRRGGRILDPPVALPVLVTYVLLVGSETFFVFLPPLLPRGGVSPAVLVLGAIFFLLNILN--LMLACFRMLSDPG 82 (299)
T ss_pred ccccccCCCceeeccccchhHHHHHHHHhhheEEEEEEeeecCCcccchHHHHHHHHHHHHHHHH--HHHHHhcccCCCc
Confidence 3456888999999999999888887776554 46666666665222 11 1122332222222 2222333 5999
Q ss_pred CcchhHHhhhhccccCCccccCcccchhhhhHHHHHHHHHhhHhhhhhhcccCCCCCcCCCCCCCCCcccccccCCCccc
Q 008418 137 DKTSFRRKRKAKYNANGFTKLNHGYILGQIVMRFLRRMERKILMTFIRRKYLDPLKTSTQLEPLLPFPLVIKDDAISPEL 216 (566)
Q Consensus 137 d~~v~~~~k~~k~~~~~l~~~~~g~i~~~~~~~~~~~~e~~~~~s~~~~~~~dp~~~~~q~~~~~p~~~~~~d~~~~~~~ 216 (566)
..+... ....+ .. + ....+.....+.
T Consensus 83 ~~p~~~-----------~~~~~----------------------------------------~~-~--~~~~~~~~~~~~ 108 (299)
T KOG1311|consen 83 IVPRAD-----------DEQIE----------------------------------------DP-E--RAPLYKNVDVNG 108 (299)
T ss_pred eecCcc-----------cCCCC----------------------------------------Cc-c--ccccCCCcccCC
Confidence 754311 00000 00 0 000011112233
Q ss_pred cCcCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008418 217 KEDDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDK 296 (566)
Q Consensus 217 ~~~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~ 296 (566)
.+.+++||.+|+.++|+|||||++||+||++|||||+|+|||||++|||+|+.|++++.+++++..+...+.+.....+.
T Consensus 109 ~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~ 188 (299)
T KOG1311|consen 109 IQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNL 188 (299)
T ss_pred cccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44578999999999999999999999999999999999999999999999999999999998888777777665544332
Q ss_pred cchhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Q 008418 297 KGIEQELERRLHVEFPREVLATILVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILA 357 (566)
Q Consensus 297 ~~~~~~i~~~l~~~~~~~~~~~i~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~ 357 (566)
..... .........+.++++++++++++++++|+.||+++|.+|+||+|+++.
T Consensus 189 ~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~ 241 (299)
T KOG1311|consen 189 KVNLT--------PVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS 241 (299)
T ss_pred ccccc--------ccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc
Confidence 22111 011122233445556777888888889999999999999999999865
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1e-35 Score=306.13 Aligned_cols=216 Identities=25% Similarity=0.483 Sum_probs=145.6
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhcc----chhhhHHHHHHHHHHHHHHHHHHHhhhheeeCCCCcchhHHhhhhc
Q 008418 73 WQRPLHPLQMVGMAVYSCLVVAFYTFLGLF----LGNRIAEFTVTSIFSFVALSVIFLFIRCTAIDPTDKTSFRRKRKAK 148 (566)
Q Consensus 73 WqlPlhplQvVai~Vf~lL~~afYvf~~Pf----Lg~~i~~~i~~~Iys~L~l~v~~lYi~c~~iDPGd~~v~~~~k~~k 148 (566)
|-.+++-.+++ ++.+|++++-+ +...+...+...++.+++++.++.|++++.+|||.++......
T Consensus 13 ~~~~~~i~~~~--------~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~--- 81 (307)
T KOG1315|consen 13 WIPVLIILLVI--------GWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPS--- 81 (307)
T ss_pred chhheeeeeeE--------EEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCC---
Confidence 66555544443 34444443322 2333445555678889999999999999999999887532110
Q ss_pred cccCCccccCcccchhhhhHHHHHHHHHhhHhhhhhhcccCCCCCcCCCCCCCCCcccccccCCCccccCcCcccccccc
Q 008418 149 YNANGFTKLNHGYILGQIVMRFLRRMERKILMTFIRRKYLDPLKTSTQLEPLLPFPLVIKDDAISPELKEDDISFCSLCD 228 (566)
Q Consensus 149 ~~~~~l~~~~~g~i~~~~~~~~~~~~e~~~~~s~~~~~~~dp~~~~~q~~~~~p~~~~~~d~~~~~~~~~~~~~~C~~C~ 228 (566)
.++....+. ...+ + .+......+.++..++|.+|+
T Consensus 82 --~~~~~~~~~--------------------------~~~~------------~-----~~~~~~~~~~~g~~R~C~kC~ 116 (307)
T KOG1315|consen 82 --VEDEDSLEN--------------------------GSDN------------E-----RDLPGYTRTSDGAVRYCDKCK 116 (307)
T ss_pred --cCccccccc--------------------------cCcc------------c-----ccceeeEecCCCCceeecccc
Confidence 000000000 0000 0 000111223446889999999
Q ss_pred cccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHhhhhc
Q 008418 229 FEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDKKGIEQELERRLH 308 (566)
Q Consensus 229 ~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~~~~~~~i~~~l~ 308 (566)
.+||+|||||++|+|||++|||||+|+|||||.+|||+|++|++|+.+.+++..+..+..++..+....
T Consensus 117 ~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~----------- 185 (307)
T KOG1315|consen 117 CIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGA----------- 185 (307)
T ss_pred cccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 999999999999999999999999999999999999999999999999998877766666665441110
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Q 008418 309 VEFPREVLATILVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILA 357 (566)
Q Consensus 309 ~~~~~~~~~~i~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~ 357 (566)
.+......+.++++++++.+++.+++|+++|++||.+|+||+|....
T Consensus 186 --~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~ 232 (307)
T KOG1315|consen 186 --GPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKS 232 (307)
T ss_pred --cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcc
Confidence 11111122334555666666777778999999999999999997643
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=6.5e-34 Score=269.85 Aligned_cols=129 Identities=30% Similarity=0.657 Sum_probs=103.1
Q ss_pred cCcCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008418 217 KEDDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDK 296 (566)
Q Consensus 217 ~~~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~ 296 (566)
..+..++|.+|+..||+|||||+.||+||.+|||||+|+|||||.+|||+|++|+++..+++++..+..+..+.......
T Consensus 44 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (174)
T PF01529_consen 44 ENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSI 123 (174)
T ss_pred cCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44578999999999999999999999999999999999999999999999999999999998888776766665443322
Q ss_pred cchhHHHhhhhcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Q 008418 297 KGIEQELERRLHVEFPREVLATI-LVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILA 357 (566)
Q Consensus 297 ~~~~~~i~~~l~~~~~~~~~~~i-~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~ 357 (566)
... ........ .+++++++++++++++.|+++|+++|.+|+||+|++++
T Consensus 124 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 124 SFS------------SFWIFSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred ccc------------ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 110 00001111 24555666777888999999999999999999999864
No 4
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.97 E-value=5.6e-31 Score=268.78 Aligned_cols=140 Identities=29% Similarity=0.452 Sum_probs=96.0
Q ss_pred CcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDKKGI 299 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~~~~ 299 (566)
-.+||..|+.+|+||||||+.|||||.+|||||||+|||||..||-+|..||++..++++-...+.+..+++-+...+..
T Consensus 90 ~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~ 169 (414)
T KOG1314|consen 90 FLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYI 169 (414)
T ss_pred HHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999876543222211111111100100
Q ss_pred hHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHh
Q 008418 300 EQELERRLHVEFPREVLATILVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILAMKE 360 (566)
Q Consensus 300 ~~~i~~~l~~~~~~~~~~~i~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~~R~ 360 (566)
.....+...+.+....+ +..++.+.+++...+.++.||+.|+..|.+|+|.+|-....++
T Consensus 170 ~~g~~hlp~v~ft~~~l-i~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka 229 (414)
T KOG1314|consen 170 KYGLRHLPIVFFTLSSL-IALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKA 229 (414)
T ss_pred hcccccCceeeccHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 00011111111222211 2233445566667788889999999999999999997664443
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=267.89 Aligned_cols=133 Identities=28% Similarity=0.542 Sum_probs=100.3
Q ss_pred cCcCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008418 217 KEDDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDK 296 (566)
Q Consensus 217 ~~~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~ 296 (566)
+.+..++|.+|+.+||+|||||+.||+||++|||||+|+|||||++|||+|++|+++..+..++.++...+.+...+...
T Consensus 105 ~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (309)
T COG5273 105 KFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIR 184 (309)
T ss_pred ccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34578999999999999999999999999999999999999999999999999999998877777666666554333221
Q ss_pred cchhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhh
Q 008418 297 KGIEQELERRLHVEFPREVLATILVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILAMKEQN 362 (566)
Q Consensus 297 ~~~~~~i~~~l~~~~~~~~~~~i~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~~R~~~ 362 (566)
.. +......++..+..+....++.+..++.+|.+++..|.||+|.+...|..+
T Consensus 185 ~~-------------~~~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~ 237 (309)
T COG5273 185 HD-------------TSLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGS 237 (309)
T ss_pred CC-------------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccee
Confidence 11 111111112223344444566677899999999999999999986655444
No 6
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.96 E-value=5.8e-30 Score=254.55 Aligned_cols=147 Identities=27% Similarity=0.569 Sum_probs=110.3
Q ss_pred CcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDKKGI 299 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~~~~ 299 (566)
...+|.+|+.+||+|+|||+.|||||++|||||||+|||||.+|||+||+|++|+.+.+.+..+.+.+.++......+..
T Consensus 101 ~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~ 180 (309)
T KOG1313|consen 101 NDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEI 180 (309)
T ss_pred cccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhc
Confidence 55899999999999999999999999999999999999999999999999999999999988777777666544322211
Q ss_pred hHHHhhhhccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhhcccc
Q 008418 300 EQELERRLHVE-------FPREVLATILVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILAMKEQNQFSE 366 (566)
Q Consensus 300 ~~~i~~~l~~~-------~~~~~~~~i~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~~R~~~~~~~ 366 (566)
...-.+..... +...+...-++.+.++++.++++++.|..+|.++|..|.|.+|+...++++++...
T Consensus 181 tay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a 254 (309)
T KOG1313|consen 181 TAYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLA 254 (309)
T ss_pred ccccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHH
Confidence 11100000000 11111111223356666677888999999999999999999999988887776644
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=218.01 Aligned_cols=63 Identities=40% Similarity=0.886 Sum_probs=57.3
Q ss_pred CcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHH
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEG 282 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~ 282 (566)
....|++|+.+||.|||||+.||+||.+|||||.|+|||||.+|+|+|++|+++...++.+..
T Consensus 147 k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yai 209 (341)
T KOG1312|consen 147 KNVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAI 209 (341)
T ss_pred CCCccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999999999999966655543
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.88 E-value=3.6e-23 Score=225.63 Aligned_cols=68 Identities=37% Similarity=0.845 Sum_probs=63.0
Q ss_pred ccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008418 222 SFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVF 289 (566)
Q Consensus 222 ~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~ 289 (566)
+||.+|.+.||.|||||+.||+||.+|||||||++||||.+||++|+.|++.....+.++...+.+++
T Consensus 421 ~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~ 488 (600)
T KOG0509|consen 421 RFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYI 488 (600)
T ss_pred cceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999888877766666554
No 9
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=92.77 E-value=0.53 Score=49.80 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=81.2
Q ss_pred cCcCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008418 217 KEDDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAVFIRCFVDK 296 (566)
Q Consensus 217 ~~~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~~i~~~~~~ 296 (566)
+.+..++|+.|+.=+...-|||.-=|+||.+-.| +=+-.|+.++.+..+..++.....+......-.+.
T Consensus 119 KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (309)
T COG5273 119 KPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDT 187 (309)
T ss_pred cCCCCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCh
Confidence 3457899999999999999999999999998766 66778888887666555444444444333222222
Q ss_pred cchhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 008418 297 KGIEQELERRLHVEFPREVLATILVFLVLMTAYSTAAMGQLFFFHVVLIRKGIRTYDYILAMKEQ 361 (566)
Q Consensus 297 ~~~~~~i~~~l~~~~~~~~~~~i~illlll~~~~~i~lg~L~~fHiyLI~kn~TTyE~i~~~R~~ 361 (566)
......+- ...+......+.++..++......++..+.....+.+.++.++-|.....|+.
T Consensus 188 ~~~~~~li----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~ 248 (309)
T COG5273 188 SLAICFLI----FGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES 248 (309)
T ss_pred HHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC
Confidence 22211000 00111112122223333333445566678889999999999999987666654
No 10
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=90.37 E-value=0.99 Score=47.05 Aligned_cols=42 Identities=26% Similarity=0.511 Sum_probs=36.1
Q ss_pred CCcccccCcccccCCcccccccCceeeccch-----------hHHHHHHHHHH
Q 008418 234 HSKHCRTCNRCVEGFDHHCRWLNNCVGKRNY-----------TTFILLMVFVL 275 (566)
Q Consensus 234 RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNy-----------k~FilfL~~~~ 275 (566)
+-|+|..|+..+...-|||+.-|+||-+.-| +-+-.|+.++.
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 4799999999999999999999999988855 56777885555
No 11
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=90.36 E-value=2.3 Score=45.07 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCcccccCcccccCCcccccccCceeeccchh
Q 008418 234 HSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYT 265 (566)
Q Consensus 234 RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk 265 (566)
+.+.|..|+.-....-|||.--+-||.+.-|.
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHH 139 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHH 139 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccC
Confidence 56677777777777777777777777776543
No 12
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=86.92 E-value=3 Score=39.33 Aligned_cols=59 Identities=20% Similarity=0.426 Sum_probs=44.5
Q ss_pred cCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008418 219 DDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIAV 288 (566)
Q Consensus 219 ~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~~ 288 (566)
...++|..|+.-+..+-|||.--|.||..--| +.+-.|+.++....+..++.....+..
T Consensus 60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~ 118 (174)
T PF01529_consen 60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLYYLVR 118 (174)
T ss_pred CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998776 556677777766655554444444443
No 13
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=78.68 E-value=13 Score=39.97 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=39.0
Q ss_pred cCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHH
Q 008418 219 DDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLL 276 (566)
Q Consensus 219 ~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l 276 (566)
...+.|.+|+.=+..=-|||.--|.||.-..| --+-+|++|.+...+
T Consensus 103 pRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh-----------~~F~~FLlf~ivG~i 149 (414)
T KOG1314|consen 103 PRSHHCRKCNRCVMKMDHHCPWINNCVGWANH-----------AYFLRFLLFSIVGCI 149 (414)
T ss_pred CccccchHHHHHHHhhccCCcchhhccccccc-----------HHHHHHHHHHHHhcc
Confidence 46789999999999999999999999986655 346789999888544
No 14
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=69.72 E-value=2.1 Score=48.85 Aligned_cols=59 Identities=8% Similarity=-0.007 Sum_probs=48.5
Q ss_pred CcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHH
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLI 279 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li 279 (566)
-...|..|....+.+-.+|..|..|+..|++||.|+. ||+.+|-..|....+...+...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~ 382 (600)
T KOG0509|consen 324 LTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYF 382 (600)
T ss_pred hheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999 9999998865554444443333
No 15
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=65.06 E-value=3.3 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.937 Sum_probs=18.1
Q ss_pred cccccccccccCCcccccCcc
Q 008418 223 FCSLCDFEVKKHSKHCRTCNR 243 (566)
Q Consensus 223 ~C~~C~~~kP~RSkHC~~C~k 243 (566)
||..|....++.++.|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 688899999999999988875
No 16
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=51.69 E-value=7.9 Score=30.03 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=21.9
Q ss_pred CcccccccccccccCCcccccCcc
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNR 243 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~k 243 (566)
....|..|...-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 568899999999999999998875
No 17
>PF12773 DZR: Double zinc ribbon
Probab=49.17 E-value=15 Score=27.86 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=25.2
Q ss_pred Ccccccccccccc---cCCcccccCcccccCCcccccc
Q 008418 220 DISFCSLCDFEVK---KHSKHCRTCNRCVEGFDHHCRW 254 (566)
Q Consensus 220 ~~~~C~~C~~~kP---~RSkHC~~C~kCV~rfDHHCpW 254 (566)
+.+||..|....+ ...++|..|+.=+...+.+|++
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 5678888887766 3356688888877777777764
No 18
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=47.77 E-value=73 Score=33.49 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=46.5
Q ss_pred cCcccccccccccccCCcccccCcccccCCcccccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008418 219 DDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTTFILLMVFVLLMLIIEGGTAIA 287 (566)
Q Consensus 219 ~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHHCpWlnNCIG~rNyk~FilfL~~~~l~li~~~~~~i~ 287 (566)
...+.|+.|+.=+-.=-|||.-=|.||.-..| +=+-.|+.++..++.++.++....+.
T Consensus 114 prTHHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~~~~~w~ 171 (309)
T KOG1313|consen 114 PRTHHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIMCVYTWI 171 (309)
T ss_pred CCcchhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999998888889999999999998887 66778999988777766666443333
No 19
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=46.52 E-value=24 Score=35.92 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhheeeCCCCc
Q 008418 113 TSIFSFVALSVIFLFIRCTAIDPTDK 138 (566)
Q Consensus 113 ~~Iys~L~l~v~~lYi~c~~iDPGd~ 138 (566)
+++.+++++.++.+|..|...|||++
T Consensus 197 liVitl~vf~LvgLyr~C~k~dPg~p 222 (259)
T PF07010_consen 197 LIVITLSVFTLVGLYRMCWKTDPGTP 222 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 34556677778889999999999986
No 20
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=46.25 E-value=11 Score=25.26 Aligned_cols=22 Identities=32% Similarity=0.869 Sum_probs=17.8
Q ss_pred ccccccccccccCCcccccCcc
Q 008418 222 SFCSLCDFEVKKHSKHCRTCNR 243 (566)
Q Consensus 222 ~~C~~C~~~kP~RSkHC~~C~k 243 (566)
.+|..|....++.++.|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5788888888888888888874
No 21
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=39.54 E-value=3.8e+02 Score=29.80 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=23.7
Q ss_pred cCcccccccccccccCCcccccCcccccCCccc
Q 008418 219 DDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHH 251 (566)
Q Consensus 219 ~~~~~C~~C~~~kP~RSkHC~~C~kCV~rfDHH 251 (566)
++..-|..|+...+....||..|+.-..+..++
T Consensus 219 ~~l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~ 251 (419)
T PRK15103 219 QGLRSCSCCTAILPADQPVCPRCHTKGYVRRRN 251 (419)
T ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCC
Confidence 355679999998777777888887766554443
No 22
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=38.58 E-value=18 Score=42.72 Aligned_cols=22 Identities=27% Similarity=0.750 Sum_probs=18.3
Q ss_pred ccccccccccc-------cCCcccccCcc
Q 008418 222 SFCSLCDFEVK-------KHSKHCRTCNR 243 (566)
Q Consensus 222 ~~C~~C~~~kP-------~RSkHC~~C~k 243 (566)
..|..|+..-. .|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 67999998764 38999999887
No 23
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.54 E-value=14 Score=29.61 Aligned_cols=35 Identities=34% Similarity=0.866 Sum_probs=25.5
Q ss_pred ccccccccccCC-------cccccCcccccCC-cccccccCceeec
Q 008418 224 CSLCDFEVKKHS-------KHCRTCNRCVEGF-DHHCRWLNNCVGK 261 (566)
Q Consensus 224 C~~C~~~kP~RS-------kHC~~C~kCV~rf-DHHCpWlnNCIG~ 261 (566)
|..|+.-.|+-| +-|..|..|+..+ +++|| ||=|.
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 555555555443 5688999999988 99999 77664
No 24
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=1.4e+02 Score=25.25 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhh
Q 008418 114 SIFSFVALSVIFLFI 128 (566)
Q Consensus 114 ~Iys~L~l~v~~lYi 128 (566)
+++.++++.+|++++
T Consensus 57 gl~ll~lig~Fis~v 71 (81)
T KOG3488|consen 57 GLFLLCLIGTFISLV 71 (81)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666676665
No 25
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.01 E-value=24 Score=23.89 Aligned_cols=21 Identities=33% Similarity=0.765 Sum_probs=17.8
Q ss_pred cccccccccccCCcccccCcc
Q 008418 223 FCSLCDFEVKKHSKHCRTCNR 243 (566)
Q Consensus 223 ~C~~C~~~kP~RSkHC~~C~k 243 (566)
.|..|...+|.-++-|..||.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCC
Confidence 588899999999998888874
No 26
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=30.88 E-value=6.6e+02 Score=27.74 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=20.1
Q ss_pred Ccccccccccc-cccCCcccccCcccccCCccc
Q 008418 220 DISFCSLCDFE-VKKHSKHCRTCNRCVEGFDHH 251 (566)
Q Consensus 220 ~~~~C~~C~~~-kP~RSkHC~~C~kCV~rfDHH 251 (566)
+..-|..|+.. .+....||..|+.-..+..++
T Consensus 214 ~~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 214 KLRSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred CCCcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 45569999974 344455677777666554443
No 27
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.04 E-value=23 Score=28.57 Aligned_cols=26 Identities=35% Similarity=0.853 Sum_probs=12.7
Q ss_pred Cccccccccccc--ccCCcccccCcccc
Q 008418 220 DISFCSLCDFEV--KKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~k--P~RSkHC~~C~kCV 245 (566)
+...|..|...= -.|-|||+.||+.|
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 456788887653 46889999999854
No 28
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=29.01 E-value=1.2e+02 Score=25.82 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=21.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhccchhh
Q 008418 77 LHPLQMVGMAVYSCLVVAFYTFLGLFLGNR 106 (566)
Q Consensus 77 lhplQvVai~Vf~lL~~afYvf~~PfLg~~ 106 (566)
+.--|++..++.++.+++.|.++..+++..
T Consensus 17 lT~RQl~~l~~~~~~~~~~~~~~~~~l~~~ 46 (93)
T PF12666_consen 17 LTLRQLICLAIGALVGVGVYLLLWFFLGPD 46 (93)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 455688888888888888887777777633
No 29
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=28.72 E-value=13 Score=38.47 Aligned_cols=44 Identities=34% Similarity=0.721 Sum_probs=30.6
Q ss_pred cCcCcccccccccccccCCcccccCcccccC-----------------CcccccccCceee
Q 008418 217 KEDDISFCSLCDFEVKKHSKHCRTCNRCVEG-----------------FDHHCRWLNNCVG 260 (566)
Q Consensus 217 ~~~~~~~C~~C~~~kP~RSkHC~~C~kCV~r-----------------fDHHCpWlnNCIG 260 (566)
.+++.+||+.|..++...--||..|+.|..+ -=-||.-+|||-|
T Consensus 200 ~EE~~~~~~~~~~Yv~~~~~H~~~~~S~~~~~~~~~~H~~~~~~~~~~~~i~C~~~~~~A~ 260 (325)
T KOG4399|consen 200 TEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDGRKWNHCFLCKKCVKPSWIHCSICNHCAV 260 (325)
T ss_pred cccceEEEeehHHHHHHHhhhchhhcccccchhHHHhHhHHhhhhcccceeeeecccchhh
Confidence 4557888999998888877777777666542 1236667777766
No 30
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=26.85 E-value=27 Score=35.73 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=9.4
Q ss_pred ccCCcccccccC
Q 008418 245 VEGFDHHCRWLN 256 (566)
Q Consensus 245 V~rfDHHCpWln 256 (566)
....+|||||..
T Consensus 38 rsye~H~Cp~~~ 49 (250)
T KOG3183|consen 38 RSYESHHCPKGL 49 (250)
T ss_pred chHhhcCCCccc
Confidence 456799999974
No 31
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.24 E-value=46 Score=35.98 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhheeeCCC
Q 008418 119 VALSVIFLFIRCTAIDPT 136 (566)
Q Consensus 119 L~l~v~~lYi~c~~iDPG 136 (566)
|+++=+++|.....+=+|
T Consensus 235 LaIvRlILF~I~~il~~g 252 (372)
T KOG2927|consen 235 LAIVRLILFGITWILTGG 252 (372)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 333344445444444443
No 32
>PF12773 DZR: Double zinc ribbon
Probab=25.07 E-value=48 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=21.5
Q ss_pred cCcccccccccccccCCcccccCc
Q 008418 219 DDISFCSLCDFEVKKHSKHCRTCN 242 (566)
Q Consensus 219 ~~~~~C~~C~~~kP~RSkHC~~C~ 242 (566)
....+|..|....++.+++|..|+
T Consensus 27 ~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 27 QSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCCcCCcCCCcCCcCccCccc
Confidence 467899999999999999999886
No 33
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=24.49 E-value=41 Score=26.58 Aligned_cols=25 Identities=24% Similarity=0.676 Sum_probs=17.0
Q ss_pred CcccccccccccccCCccccc--Cccc
Q 008418 220 DISFCSLCDFEVKKHSKHCRT--CNRC 244 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~--C~kC 244 (566)
+...|..|...-|+++..|+- ||.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 678899999999999999998 7654
No 34
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=22.77 E-value=30 Score=38.42 Aligned_cols=25 Identities=32% Similarity=0.927 Sum_probs=20.4
Q ss_pred Cccccccccccc--ccCCcccccCccc
Q 008418 220 DISFCSLCDFEV--KKHSKHCRTCNRC 244 (566)
Q Consensus 220 ~~~~C~~C~~~k--P~RSkHC~~C~kC 244 (566)
...+|..|...- ..|-|||+.||+-
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~V 205 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRV 205 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchH
Confidence 678999998654 4689999999983
No 36
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=23 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=21.5
Q ss_pred CcccccccccccccCCcccccCcc
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNR 243 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~k 243 (566)
....|..|...-|+++.-|+-|+.
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccC
Confidence 567899999999999999998865
No 37
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.45 E-value=9.9e+02 Score=25.55 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHhCCccHHHHHHHHhhhcccc
Q 008418 344 LIRKGIRTYDYILAMKEQNQFSE 366 (566)
Q Consensus 344 LI~kn~TTyE~i~~~R~~~~~~~ 366 (566)
++.+-+=.||..+++|++..+++
T Consensus 252 ~v~~RRLA~~Ra~~kR~~~~aqr 274 (340)
T PF12794_consen 252 LVARRRLAYERAKEKRAEALAQR 274 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444447888888888876655
Done!