Query 008418
Match_columns 566
No_of_seqs 297 out of 1436
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 51.2 12 0.0004 30.7 3.5 26 220-245 20-47 (84)
2 2ayj_A 50S ribosomal protein L 46.1 7.7 0.00026 30.0 1.4 27 220-246 18-44 (56)
3 3j21_g 50S ribosomal protein L 43.0 9.4 0.00032 28.9 1.5 27 220-246 13-39 (51)
4 1x4u_A Zinc finger, FYVE domai 42.0 12 0.0004 30.7 2.1 25 220-244 13-39 (84)
5 1joc_A EEA1, early endosomal a 38.6 12 0.00041 33.1 1.7 26 220-245 68-95 (125)
6 2yw8_A RUN and FYVE domain-con 35.0 17 0.00059 29.5 2.0 26 220-245 18-45 (82)
7 1wfk_A Zinc finger, FYVE domai 30.1 22 0.00075 29.5 1.9 26 220-245 8-35 (88)
8 1vfy_A Phosphatidylinositol-3- 30.1 18 0.00062 28.8 1.3 23 223-245 13-37 (73)
9 1dvp_A HRS, hepatocyte growth 29.3 18 0.00061 34.7 1.3 24 222-245 162-187 (220)
10 2kix_A BM2 protein; channel, t 26.7 45 0.0015 22.3 2.5 22 77-98 2-23 (33)
11 3t7l_A Zinc finger FYVE domain 26.3 26 0.00089 29.1 1.7 26 220-245 19-46 (90)
12 1y02_A CARP2, FYVE-ring finger 24.3 24 0.00083 31.1 1.2 24 221-244 19-44 (120)
13 2jx6_A DD K, dermadistinctin-K 23.0 50 0.0017 22.6 2.2 24 426-449 1-24 (34)
14 3zyq_A Hepatocyte growth facto 22.2 59 0.002 31.3 3.6 24 222-245 165-190 (226)
15 2vrw_B P95VAV, VAV1, proto-onc 21.6 30 0.001 35.7 1.5 29 219-247 355-386 (406)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.19 E-value=12 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=19.3
Q ss_pred Cccccccccccc--ccCCcccccCcccc
Q 008418 220 DISFCSLCDFEV--KKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~k--P~RSkHC~~C~kCV 245 (566)
+...|..|...= -.|-|||+.|++-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 556788888752 36789999998743
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=46.11 E-value=7.7 Score=29.96 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.3
Q ss_pred CcccccccccccccCCcccccCccccc
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNRCVE 246 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~kCV~ 246 (566)
....|..|...-|+++..|+-|+..-+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred chhhhccccCcCCcccccccCCCCCCC
Confidence 678999999999999999998875433
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.00 E-value=9.4 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.5
Q ss_pred CcccccccccccccCCcccccCccccc
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNRCVE 246 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~kCV~ 246 (566)
....|..|....|.++..|+.|+.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 568899999999999999999987543
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.00 E-value=12 Score=30.68 Aligned_cols=25 Identities=24% Similarity=0.670 Sum_probs=18.6
Q ss_pred Ccccccccccc--cccCCcccccCccc
Q 008418 220 DISFCSLCDFE--VKKHSKHCRTCNRC 244 (566)
Q Consensus 220 ~~~~C~~C~~~--kP~RSkHC~~C~kC 244 (566)
+...|..|... .-.|-|||+.|++-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcE
Confidence 45678888764 34688999999873
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.64 E-value=12 Score=33.10 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=18.9
Q ss_pred Ccccccccccc--cccCCcccccCcccc
Q 008418 220 DISFCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
....|..|... ...|-|||+.||+-|
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEE
Confidence 45678888864 246889999998743
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.03 E-value=17 Score=29.54 Aligned_cols=26 Identities=27% Similarity=0.845 Sum_probs=18.9
Q ss_pred Cccccccccccc--ccCCcccccCcccc
Q 008418 220 DISFCSLCDFEV--KKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~k--P~RSkHC~~C~kCV 245 (566)
+...|..|...= -.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 456788888643 46889999998744
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.06 E-value=22 Score=29.48 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=18.8
Q ss_pred Ccccccccccc--cccCCcccccCcccc
Q 008418 220 DISFCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
+...|..|... .-.|-|||+.|++-+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEE
Confidence 45678888864 346789999998733
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.05 E-value=18 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.826 Sum_probs=16.7
Q ss_pred cccccccc--cccCCcccccCcccc
Q 008418 223 FCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 223 ~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
.|..|... .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888764 235789999998743
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.30 E-value=18 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.866 Sum_probs=17.9
Q ss_pred cccccccccc--ccCCcccccCcccc
Q 008418 222 SFCSLCDFEV--KKHSKHCRTCNRCV 245 (566)
Q Consensus 222 ~~C~~C~~~k--P~RSkHC~~C~kCV 245 (566)
..|..|...= -.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 5798887542 35789999998844
No 10
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=26.71 E-value=45 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhh
Q 008418 77 LHPLQMVGMAVYSCLVVAFYTF 98 (566)
Q Consensus 77 lhplQvVai~Vf~lL~~afYvf 98 (566)
+.|+|+++|.-|.+.+.-|.++
T Consensus 2 lep~qilsi~sfilsalhf~aw 23 (33)
T 2kix_A 2 LEPFQILSISSFILSALHFIAW 23 (33)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 4689999998888766655544
No 11
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.32 E-value=26 Score=29.06 Aligned_cols=26 Identities=27% Similarity=0.793 Sum_probs=18.4
Q ss_pred Ccccccccccc--cccCCcccccCcccc
Q 008418 220 DISFCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
+...|..|... .-.|-|||+.||+-+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE
Confidence 45678888753 235789999998743
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.25 E-value=24 Score=31.12 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=17.5
Q ss_pred cccccccccc--cccCCcccccCccc
Q 008418 221 ISFCSLCDFE--VKKHSKHCRTCNRC 244 (566)
Q Consensus 221 ~~~C~~C~~~--kP~RSkHC~~C~kC 244 (566)
...|..|... ...|-|||+.||+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred cCcccCcCCccccccccccCCCCCCe
Confidence 3568888763 34688999999984
No 13
>2jx6_A DD K, dermadistinctin-K; peptide, alpha helix, amphipathic character, C-terminal carboxyamidation, membrane peptide; NMR {Phyllomedusa distincta} PDB: 2k9b_A
Probab=23.05 E-value=50 Score=22.55 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=18.5
Q ss_pred CccccccCCHHHHHHHHHHHHHhh
Q 008418 426 DPWKLIKLSREKALLAAEKARERL 449 (566)
Q Consensus 426 ~~w~la~l~~~~a~~aa~~ar~~~ 449 (566)
+-|+-+|---.||.+||+||--+.
T Consensus 1 gLWskIK~~gk~aa~aaakAAgkA 24 (34)
T 2jx6_A 1 GLWSKIKAAGKEAAKAAAKAAGKA 24 (34)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888889999888876553
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.16 E-value=59 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.791 Sum_probs=17.3
Q ss_pred ccccccccc--cccCCcccccCcccc
Q 008418 222 SFCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 222 ~~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
..|..|... .-.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 468888753 235789999998844
No 15
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=21.63 E-value=30 Score=35.71 Aligned_cols=29 Identities=14% Similarity=0.445 Sum_probs=21.7
Q ss_pred cCccccccccccc---ccCCcccccCcccccC
Q 008418 219 DDISFCSLCDFEV---KKHSKHCRTCNRCVEG 247 (566)
Q Consensus 219 ~~~~~C~~C~~~k---P~RSkHC~~C~kCV~r 247 (566)
....+|..|...- -.|-|||+.|+..|-+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 3568999998754 4688999988765543
Done!