Query 008418
Match_columns 566
No_of_seqs 297 out of 1436
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 03:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008418.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008418hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 55.8 2.1 0.00015 31.2 1.4 24 220-243 18-41 (56)
2 d2dmda2 g.37.1.1 (A:8-33) Zinc 49.1 2 0.00015 26.0 0.4 15 236-250 2-16 (26)
3 d1joca1 g.50.1.1 (A:1348-1411) 47.0 3.7 0.00027 30.3 1.7 26 220-245 7-34 (64)
4 d2dkta2 g.93.1.1 (A:82-137) RI 41.4 2.9 0.00021 30.5 0.3 30 223-252 22-54 (56)
5 d1vfya_ g.50.1.1 (A:) vps27p p 37.2 5.6 0.00041 29.5 1.3 23 223-245 7-31 (67)
6 d2dkta2 g.93.1.1 (A:82-137) RI 34.7 7.1 0.00052 28.3 1.5 41 222-262 3-47 (56)
7 d2pg3a1 c.26.2.1 (A:1-230) Que 31.1 4.6 0.00034 35.8 -0.1 24 222-247 183-206 (230)
8 d1wfka_ g.50.1.1 (A:) Zinc fin 29.4 9.1 0.00066 29.9 1.4 26 220-245 8-35 (88)
9 d1dvpa2 g.50.1.1 (A:149-220) H 26.7 12 0.00088 28.0 1.6 24 223-246 15-40 (72)
10 d1olza3 g.16.2.1 (A:481-536) S 21.1 6.8 0.00049 28.2 -0.8 23 239-261 6-31 (56)
11 d2adra2 g.37.1.1 (A:131-161) A 20.6 9.9 0.00072 24.1 0.0 13 237-249 3-15 (31)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=55.81 E-value=2.1 Score=31.19 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.7
Q ss_pred CcccccccccccccCCcccccCcc
Q 008418 220 DISFCSLCDFEVKKHSKHCRTCNR 243 (566)
Q Consensus 220 ~~~~C~~C~~~kP~RSkHC~~C~k 243 (566)
....|..|...-|+|+..|+.|+.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 678999999999999999997764
No 2
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.06 E-value=2 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.899 Sum_probs=12.5
Q ss_pred cccccCcccccCCcc
Q 008418 236 KHCRTCNRCVEGFDH 250 (566)
Q Consensus 236 kHC~~C~kCV~rfDH 250 (566)
|.|..|++|..+-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 569999999988764
No 3
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.00 E-value=3.7 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=18.1
Q ss_pred Ccccccccccc--cccCCcccccCcccc
Q 008418 220 DISFCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
+..-|..|... .-.|-|||+.||+.|
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCcCCcccCCccccchhhhCCee
Confidence 34568888653 345789999999854
No 4
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.37 E-value=2.9 Score=30.48 Aligned_cols=30 Identities=33% Similarity=0.846 Sum_probs=19.8
Q ss_pred cccccccccccCCcccccCcccccC--C-cccc
Q 008418 223 FCSLCDFEVKKHSKHCRTCNRCVEG--F-DHHC 252 (566)
Q Consensus 223 ~C~~C~~~kP~RSkHC~~C~kCV~r--f-DHHC 252 (566)
.|..|.+=....-.||..|+-|+.. + .|.|
T Consensus 22 ~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~C 54 (56)
T d2dkta2 22 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 54 (56)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCC
T ss_pred CCCceeecCCccccccCccccccCcccCCCccc
Confidence 3555555556777888888888864 2 3655
No 5
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.18 E-value=5.6 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.826 Sum_probs=16.6
Q ss_pred cccccccc--cccCCcccccCcccc
Q 008418 223 FCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 223 ~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
-|..|... .-.|-|||+.||+-+
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred ccccCCCcccCcccccccccCCCEe
Confidence 37777763 346789999999854
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.65 E-value=7.1 Score=28.32 Aligned_cols=41 Identities=37% Similarity=0.802 Sum_probs=31.0
Q ss_pred ccccccccccc-cCCcccccCcccccCC--c-ccccccCceeecc
Q 008418 222 SFCSLCDFEVK-KHSKHCRTCNRCVEGF--D-HHCRWLNNCVGKR 262 (566)
Q Consensus 222 ~~C~~C~~~kP-~RSkHC~~C~kCV~rf--D-HHCpWlnNCIG~r 262 (566)
-||.+|+.+-- +...||..||-|-.+- | -||.=-|.|+...
T Consensus 3 YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 3 YYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp EECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred eECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCcc
Confidence 47889988732 3457999999998663 2 3999999998654
No 7
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=31.11 E-value=4.6 Score=35.81 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=18.9
Q ss_pred ccccccccccccCCcccccCcccccC
Q 008418 222 SFCSLCDFEVKKHSKHCRTCNRCVEG 247 (566)
Q Consensus 222 ~~C~~C~~~kP~RSkHC~~C~kCV~r 247 (566)
..-..| +.+.+.+||..|..|+.|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 334456 578888999999999987
No 8
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.36 E-value=9.1 Score=29.91 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=19.0
Q ss_pred Ccccccccccc--cccCCcccccCcccc
Q 008418 220 DISFCSLCDFE--VKKHSKHCRTCNRCV 245 (566)
Q Consensus 220 ~~~~C~~C~~~--kP~RSkHC~~C~kCV 245 (566)
....|..|... ...|-|||+.|++.+
T Consensus 8 ~~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred ccCcCcccCchhccccccccccccChhh
Confidence 44568888864 356789999999843
No 9
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.71 E-value=12 Score=27.99 Aligned_cols=24 Identities=29% Similarity=0.827 Sum_probs=17.7
Q ss_pred cccccccc--cccCCcccccCccccc
Q 008418 223 FCSLCDFE--VKKHSKHCRTCNRCVE 246 (566)
Q Consensus 223 ~C~~C~~~--kP~RSkHC~~C~kCV~ 246 (566)
.|..|... .-.|-|||+.|++.+=
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 48888863 3467899999998543
No 10
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.08 E-value=6.8 Score=28.15 Aligned_cols=23 Identities=39% Similarity=0.882 Sum_probs=19.3
Q ss_pred ccCcccccCCccccccc---Cceeec
Q 008418 239 RTCNRCVEGFDHHCRWL---NNCVGK 261 (566)
Q Consensus 239 ~~C~kCV~rfDHHCpWl---nNCIG~ 261 (566)
..|..||.-.|-||-|- +.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 46899999999999995 678854
No 11
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=20.59 E-value=9.9 Score=24.10 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=11.5
Q ss_pred ccccCcccccCCc
Q 008418 237 HCRTCNRCVEGFD 249 (566)
Q Consensus 237 HC~~C~kCV~rfD 249 (566)
+|..|+||..+.|
T Consensus 3 ~C~~C~R~FaRrD 15 (31)
T d2adra2 3 PCGLCNRAFTRRD 15 (31)
T ss_dssp ECTTTCCEESSHH
T ss_pred ccccccchhhHHH
Confidence 6999999999877
Done!