Query 008419
Match_columns 566
No_of_seqs 422 out of 1582
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 5.1E-19 1.8E-23 136.4 1.7 56 271-330 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 1.9E-16 6.6E-21 134.0 6.0 87 115-204 4-93 (94)
3 2ct7_A Ring finger protein 31; 99.2 4.6E-13 1.6E-17 111.3 -1.2 77 186-266 4-84 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.0 2.2E-11 7.4E-16 108.7 -2.1 115 115-289 6-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 99.0 1.4E-11 4.9E-16 100.7 -3.7 65 186-254 5-75 (80)
6 3hcs_A TNF receptor-associated 98.6 2.9E-08 9.8E-13 92.7 5.6 84 113-224 15-98 (170)
7 2ysj_A Tripartite motif-contai 98.5 1.4E-07 4.8E-12 72.9 5.6 46 113-165 17-62 (63)
8 2egp_A Tripartite motif-contai 98.5 2.3E-08 7.9E-13 80.9 0.6 57 114-175 10-66 (79)
9 2ecv_A Tripartite motif-contai 98.5 1.5E-07 5E-12 76.9 5.3 56 114-175 17-72 (85)
10 2ysl_A Tripartite motif-contai 98.4 6.2E-08 2.1E-12 77.1 2.5 53 113-174 17-69 (73)
11 2ecy_A TNF receptor-associated 98.4 9E-08 3.1E-12 74.8 3.3 51 114-175 13-63 (66)
12 3ztg_A E3 ubiquitin-protein li 98.4 8.2E-08 2.8E-12 80.1 3.1 49 114-172 11-60 (92)
13 2ecw_A Tripartite motif-contai 98.4 2E-07 6.7E-12 76.1 4.9 56 114-175 17-72 (85)
14 2ct2_A Tripartite motif protei 98.4 8.6E-08 2.9E-12 79.0 2.5 61 114-181 13-75 (88)
15 2d8t_A Dactylidin, ring finger 98.4 1.7E-07 5.7E-12 74.4 3.8 55 112-178 11-65 (71)
16 1t1h_A Gspef-atpub14, armadill 98.4 9.3E-08 3.2E-12 77.2 2.2 51 114-175 6-56 (78)
17 1e4u_A Transcriptional repress 98.4 2.2E-07 7.6E-12 75.4 3.9 53 114-175 9-63 (78)
18 2yu4_A E3 SUMO-protein ligase 98.4 2E-07 6.9E-12 78.3 3.8 56 115-174 6-63 (94)
19 2yur_A Retinoblastoma-binding 98.3 4.1E-07 1.4E-11 72.8 4.9 49 113-171 12-61 (74)
20 1rmd_A RAG1; V(D)J recombinati 98.3 1.8E-07 6E-12 81.6 2.4 82 115-223 22-103 (116)
21 1jm7_A BRCA1, breast cancer ty 98.3 2.6E-07 8.8E-12 79.8 3.3 54 115-177 20-73 (112)
22 3hct_A TNF receptor-associated 98.3 5.7E-07 1.9E-11 78.7 5.4 84 113-224 15-98 (118)
23 3l11_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 79.8 3.6 51 113-174 12-62 (115)
24 3lrq_A E3 ubiquitin-protein li 98.3 2.2E-07 7.4E-12 79.0 2.2 51 115-176 21-72 (100)
25 3knv_A TNF receptor-associated 98.3 4.7E-07 1.6E-11 81.9 4.5 49 113-172 28-76 (141)
26 2csy_A Zinc finger protein 183 98.3 6E-07 2.1E-11 73.0 4.7 48 114-173 13-60 (81)
27 2ecj_A Tripartite motif-contai 98.3 6.6E-07 2.2E-11 67.6 4.4 45 114-165 13-57 (58)
28 3fl2_A E3 ubiquitin-protein li 98.3 3.5E-07 1.2E-11 80.7 3.2 49 115-174 51-99 (124)
29 2djb_A Polycomb group ring fin 98.2 9E-07 3.1E-11 70.3 4.9 50 114-175 13-63 (72)
30 2ecm_A Ring finger and CHY zin 98.2 5.9E-07 2E-11 67.1 3.4 48 115-172 4-53 (55)
31 2kr4_A Ubiquitin conjugation f 98.2 7.1E-07 2.4E-11 73.5 4.1 50 114-175 12-61 (85)
32 3ng2_A RNF4, snurf, ring finge 98.2 1.4E-07 4.9E-12 74.4 -0.4 52 114-175 8-64 (71)
33 2y43_A E3 ubiquitin-protein li 98.2 4E-07 1.4E-11 77.0 2.2 48 115-174 21-69 (99)
34 4ayc_A E3 ubiquitin-protein li 98.2 5E-07 1.7E-11 81.4 2.4 46 116-173 53-98 (138)
35 2ea6_A Ring finger protein 4; 98.2 8.5E-07 2.9E-11 69.4 3.4 50 114-173 13-67 (69)
36 2xeu_A Ring finger protein 4; 98.2 2.2E-07 7.4E-12 71.7 -0.4 51 115-175 2-57 (64)
37 3htk_C E3 SUMO-protein ligase 98.2 1.2E-06 4.2E-11 86.2 4.8 55 113-175 178-233 (267)
38 1g25_A CDK-activating kinase a 98.1 2.7E-07 9.1E-12 71.8 -0.1 52 116-176 3-57 (65)
39 1z6u_A NP95-like ring finger p 98.1 1.2E-06 4.1E-11 80.1 3.1 50 115-175 77-126 (150)
40 2ckl_A Polycomb group ring fin 98.1 1.3E-06 4.4E-11 75.1 2.9 47 115-173 14-61 (108)
41 2kiz_A E3 ubiquitin-protein li 98.1 3.4E-06 1.2E-10 66.2 5.0 50 114-173 12-62 (69)
42 1jm7_B BARD1, BRCA1-associated 98.1 6.1E-07 2.1E-11 78.4 0.3 46 115-174 21-67 (117)
43 2kre_A Ubiquitin conjugation f 98.0 2.3E-06 7.7E-11 72.8 3.6 49 114-174 27-75 (100)
44 1bor_A Transcription factor PM 98.0 8.2E-07 2.8E-11 67.1 0.7 44 115-173 5-48 (56)
45 1wgm_A Ubiquitin conjugation f 98.0 2.9E-06 9.9E-11 71.8 3.7 50 114-175 20-70 (98)
46 2l0b_A E3 ubiquitin-protein li 98.0 3.7E-06 1.3E-10 70.0 3.3 51 114-174 38-89 (91)
47 1iym_A EL5; ring-H2 finger, ub 97.9 3.4E-06 1.2E-10 63.0 2.7 48 115-172 4-53 (55)
48 1v87_A Deltex protein 2; ring- 97.9 4.8E-06 1.6E-10 72.1 3.9 53 116-173 25-93 (114)
49 2ect_A Ring finger protein 126 97.9 5.3E-06 1.8E-10 66.7 3.8 52 114-175 13-65 (78)
50 1chc_A Equine herpes virus-1 r 97.9 5.1E-06 1.8E-10 64.9 3.0 47 115-173 4-51 (68)
51 2ecn_A Ring finger protein 141 97.9 3.2E-06 1.1E-10 66.5 1.7 47 114-173 13-59 (70)
52 2ep4_A Ring finger protein 24; 97.9 8.5E-06 2.9E-10 64.8 4.0 50 114-173 13-63 (74)
53 2ckl_B Ubiquitin ligase protei 97.9 5.5E-06 1.9E-10 76.7 3.1 49 114-173 52-101 (165)
54 1x4j_A Ring finger protein 38; 97.9 6.8E-06 2.3E-10 65.6 3.0 50 114-173 21-71 (75)
55 2c2l_A CHIP, carboxy terminus 97.8 7.1E-06 2.4E-10 81.9 3.9 51 114-175 206-256 (281)
56 2f42_A STIP1 homology and U-bo 97.7 1.3E-05 4.5E-10 75.1 3.6 51 114-175 104-154 (179)
57 4ic3_A E3 ubiquitin-protein li 97.7 8.7E-06 3E-10 65.0 1.5 43 115-173 23-66 (74)
58 2ecg_A Baculoviral IAP repeat- 97.6 1.8E-05 6.2E-10 63.3 1.7 43 115-173 24-67 (75)
59 2ecl_A Ring-box protein 2; RNF 97.4 5.4E-05 1.9E-09 61.5 2.5 49 115-173 14-75 (81)
60 2vje_A E3 ubiquitin-protein li 97.4 5.4E-05 1.8E-09 58.6 2.3 50 112-173 4-56 (64)
61 2yho_A E3 ubiquitin-protein li 97.4 4.5E-05 1.5E-09 61.8 1.2 43 116-174 18-61 (79)
62 2y1n_A E3 ubiquitin-protein li 97.3 8.9E-05 3E-09 77.4 3.7 47 117-174 333-379 (389)
63 2ea5_A Cell growth regulator w 97.3 0.00016 5.5E-09 56.7 3.9 44 114-173 13-57 (68)
64 2d8s_A Cellular modulator of i 97.3 0.00023 8E-09 57.7 4.9 52 114-173 13-69 (80)
65 2ct7_A Ring finger protein 31; 97.3 8.5E-05 2.9E-09 61.2 2.0 49 276-329 25-74 (86)
66 2vje_B MDM4 protein; proto-onc 97.3 0.00012 4.2E-09 56.4 2.6 47 115-173 6-55 (63)
67 4ap4_A E3 ubiquitin ligase RNF 97.2 9.5E-05 3.3E-09 65.1 1.4 54 113-176 69-127 (133)
68 3dpl_R Ring-box protein 1; ubi 96.9 0.00043 1.5E-08 59.2 3.3 48 115-172 36-99 (106)
69 2jmo_A Parkin; IBR, E3 ligase, 96.8 0.0005 1.7E-08 55.7 2.2 38 276-313 25-70 (80)
70 3t6p_A Baculoviral IAP repeat- 96.7 0.00037 1.3E-08 72.1 1.5 43 115-173 294-337 (345)
71 4a0k_B E3 ubiquitin-protein li 96.2 0.00078 2.7E-08 58.6 0.0 48 116-173 48-111 (117)
72 3k1l_B Fancl; UBC, ring, RWD, 96.2 0.0028 9.4E-08 64.6 3.8 60 114-175 306-374 (381)
73 2bay_A PRE-mRNA splicing facto 95.5 0.0054 1.9E-07 46.8 2.0 47 116-174 3-50 (61)
74 2ct0_A Non-SMC element 1 homol 95.2 0.0077 2.6E-07 47.9 2.1 50 115-173 14-63 (74)
75 1v92_A NSFL1 cofactor P47; 3-h 93.9 0.14 4.8E-06 36.3 6.1 40 51-90 5-44 (46)
76 2jun_A Midline-1; B-BOX, TRIM, 93.8 0.008 2.7E-07 50.4 -0.8 75 228-316 17-95 (101)
77 3vk6_A E3 ubiquitin-protein li 93.1 0.047 1.6E-06 45.5 2.7 44 118-172 3-47 (101)
78 2dal_A Protein KIAA0794; FAS a 92.2 0.33 1.1E-05 36.9 6.3 42 49-90 13-54 (62)
79 1vyx_A ORF K3, K3RING; zinc-bi 92.2 0.12 3.9E-06 39.2 3.6 49 115-173 5-58 (60)
80 2cs3_A Protein C14ORF4, MY039 92.1 0.19 6.4E-06 39.9 4.7 54 113-169 12-68 (93)
81 2jun_A Midline-1; B-BOX, TRIM, 91.6 0.078 2.7E-06 44.2 2.3 33 116-149 3-37 (101)
82 1wj7_A Hypothetical protein (R 90.7 0.46 1.6E-05 39.9 6.0 48 43-90 21-78 (104)
83 1wd2_A Ariadne-1 protein homol 89.9 0.11 3.6E-06 39.5 1.4 37 206-246 5-44 (60)
84 2di0_A Activating signal coint 89.5 0.89 3.1E-05 35.4 6.4 41 50-90 12-53 (71)
85 2dam_A ETEA protein; KIAA0887, 88.9 0.93 3.2E-05 35.0 6.1 41 50-90 17-58 (67)
86 1g25_A CDK-activating kinase a 86.5 0.36 1.2E-05 36.4 2.5 32 233-289 25-56 (65)
87 1z96_A DNA-damage, UBA-domain 85.8 1.3 4.5E-05 30.0 4.9 35 52-87 5-39 (40)
88 3vk6_A E3 ubiquitin-protein li 83.5 0.66 2.2E-05 38.6 2.9 47 209-289 3-50 (101)
89 2dzl_A Protein FAM100B; UBA-li 83.2 2.1 7.3E-05 32.8 5.5 37 53-89 19-55 (66)
90 3nw0_A Non-structural maintena 81.8 0.7 2.4E-05 44.9 2.9 50 116-175 180-230 (238)
91 3lrq_A E3 ubiquitin-protein li 81.7 0.37 1.3E-05 40.0 0.7 30 277-311 23-53 (100)
92 3e21_A HFAF1, FAS-associated f 80.7 1.3 4.5E-05 31.4 3.1 37 52-88 6-43 (45)
93 1fre_A Nuclear factor XNF7; zi 80.6 0.84 2.9E-05 31.3 2.1 32 277-315 4-37 (42)
94 1e4u_A Transcriptional repress 80.5 0.3 1E-05 38.9 -0.3 51 208-288 12-62 (78)
95 2yrg_A Tripartite motif-contai 80.5 0.8 2.7E-05 34.2 2.2 33 277-316 15-49 (59)
96 2did_A Tripartite motif protei 80.3 0.82 2.8E-05 33.2 2.1 32 277-315 9-42 (53)
97 2jrp_A Putative cytoplasmic pr 79.8 1.1 3.6E-05 36.0 2.7 33 277-311 3-41 (81)
98 2ecy_A TNF receptor-associated 79.7 0.72 2.5E-05 34.8 1.7 49 207-289 15-63 (66)
99 2csv_A Tripartite motif protei 79.6 0.78 2.7E-05 35.6 1.9 32 277-315 19-51 (72)
100 1x4j_A Ring finger protein 38; 78.3 1.9 6.5E-05 33.3 3.8 33 233-291 43-75 (75)
101 2yvr_A Transcription intermedi 78.3 0.87 3E-05 32.5 1.7 32 277-315 7-40 (50)
102 2ysj_A Tripartite motif-contai 78.1 0.57 1.9E-05 35.0 0.6 31 277-312 21-51 (63)
103 3ddt_A E3 ubiquitin-protein li 75.9 1 3.5E-05 31.9 1.5 32 277-315 7-41 (48)
104 1ify_A HHR23A, UV excision rep 75.8 5.7 0.0002 28.4 5.5 37 52-89 9-45 (49)
105 4ayc_A E3 ubiquitin-protein li 74.5 1.2 4E-05 39.2 1.8 32 277-313 54-85 (138)
106 2dja_A Midline-2; tripartite m 74.4 1.5 5.3E-05 34.9 2.3 33 277-316 19-54 (84)
107 2jne_A Hypothetical protein YF 74.2 1.9 6.5E-05 35.5 2.8 33 277-311 33-71 (101)
108 1pft_A TFIIB, PFTFIIBN; N-term 74.1 2.1 7.3E-05 30.7 2.8 29 275-303 4-34 (50)
109 2ysl_A Tripartite motif-contai 73.9 0.87 3E-05 34.9 0.7 32 277-313 21-52 (73)
110 2k4x_A 30S ribosomal protein S 73.7 1.4 4.8E-05 32.6 1.7 30 274-303 16-46 (55)
111 2yur_A Retinoblastoma-binding 73.7 0.94 3.2E-05 35.1 0.9 31 277-312 16-47 (74)
112 2ecm_A Ring finger and CHY zin 73.5 2.3 7.7E-05 30.5 2.9 29 233-287 26-54 (55)
113 2egp_A Tripartite motif-contai 72.5 1.3 4.4E-05 34.5 1.4 32 277-313 13-44 (79)
114 2d8t_A Dactylidin, ring finger 72.4 1.1 3.8E-05 34.3 1.0 31 277-312 16-46 (71)
115 2ckl_A Polycomb group ring fin 72.2 1.1 3.7E-05 37.5 0.9 31 277-312 16-47 (108)
116 2ckl_B Ubiquitin ligase protei 71.6 1.1 3.8E-05 40.6 0.9 31 277-312 55-86 (165)
117 2ep4_A Ring finger protein 24; 71.2 3 0.0001 32.0 3.3 32 230-287 32-63 (74)
118 2d8u_A Ubiquitin ligase TRIM63 71.1 1.7 5.9E-05 32.6 1.8 33 277-316 9-44 (64)
119 2g3q_A Protein YBL047C; endocy 71.0 7.2 0.00024 26.8 4.9 36 53-89 6-41 (43)
120 1bor_A Transcription factor PM 70.1 2.6 8.8E-05 30.7 2.5 27 233-288 23-49 (56)
121 2ecw_A Tripartite motif-contai 69.9 1.3 4.4E-05 34.8 0.9 30 277-311 20-49 (85)
122 2djb_A Polycomb group ring fin 69.5 1.3 4.4E-05 34.1 0.8 30 277-311 16-46 (72)
123 3ztg_A E3 ubiquitin-protein li 69.0 0.85 2.9E-05 36.8 -0.4 30 277-311 14-44 (92)
124 1wfh_A Zinc finger (AN1-like) 69.0 2.2 7.4E-05 32.5 1.9 28 275-306 14-41 (64)
125 2jr6_A UPF0434 protein NMA0874 68.7 2.8 9.4E-05 32.4 2.5 31 276-306 8-39 (68)
126 1t1h_A Gspef-atpub14, armadill 68.2 1.8 6E-05 33.7 1.3 31 277-312 9-39 (78)
127 3j20_Y 30S ribosomal protein S 68.0 1.9 6.5E-05 31.2 1.3 28 274-302 17-46 (50)
128 2y43_A E3 ubiquitin-protein li 67.7 1.4 4.9E-05 36.1 0.7 31 277-312 23-54 (99)
129 2csy_A Zinc finger protein 183 67.4 1.5 5E-05 34.5 0.7 30 277-311 16-45 (81)
130 2egm_A Tripartite motif-contai 66.9 1.2 4.2E-05 32.9 0.1 32 277-315 19-52 (57)
131 1oai_A Nuclear RNA export fact 66.6 23 0.00079 26.3 7.2 40 50-89 6-45 (59)
132 2ecj_A Tripartite motif-contai 66.0 1.1 3.8E-05 32.5 -0.3 30 277-311 16-45 (58)
133 1vg5_A RSGI RUH-014, rhomboid 65.8 8.3 0.00028 30.1 4.7 36 53-89 31-66 (73)
134 3fl2_A E3 ubiquitin-protein li 65.5 1.8 6.1E-05 37.1 0.9 30 277-311 53-82 (124)
135 1vq8_Z 50S ribosomal protein L 65.4 2.4 8.2E-05 34.1 1.6 36 275-313 26-62 (83)
136 4ic3_A E3 ubiquitin-protein li 65.4 1.9 6.3E-05 33.5 0.9 26 233-288 41-67 (74)
137 1wg2_A Zinc finger (AN1-like) 64.9 2.9 0.0001 31.8 1.9 27 276-306 15-41 (64)
138 2d8v_A Zinc finger FYVE domain 64.6 3.6 0.00012 31.4 2.3 33 115-150 7-40 (67)
139 2ecv_A Tripartite motif-contai 64.6 1.6 5.6E-05 34.1 0.5 30 277-311 20-49 (85)
140 1wfl_A Zinc finger protein 216 64.5 2.9 0.0001 32.7 1.9 26 277-306 26-51 (74)
141 3knv_A TNF receptor-associated 64.5 1.8 6.1E-05 38.4 0.7 30 277-311 32-61 (141)
142 1chc_A Equine herpes virus-1 r 63.0 2.1 7.2E-05 32.2 0.8 31 276-311 5-36 (68)
143 3ng2_A RNF4, snurf, ring finge 63.0 1.6 5.6E-05 33.1 0.2 37 276-312 10-48 (71)
144 3l11_A E3 ubiquitin-protein li 62.4 3.8 0.00013 34.4 2.4 31 277-312 16-46 (115)
145 2ct2_A Tripartite motif protei 62.2 2.1 7.2E-05 33.9 0.7 35 277-312 16-50 (88)
146 2jp7_A MRNA export factor MEX6 61.8 21 0.0007 26.5 6.0 41 49-89 4-44 (57)
147 1jm7_A BRCA1, breast cancer ty 61.7 1.7 5.9E-05 36.2 0.1 31 277-312 22-52 (112)
148 1jm7_B BARD1, BRCA1-associated 61.6 3.1 0.00011 35.3 1.7 30 277-311 23-53 (117)
149 2dak_A Ubiquitin carboxyl-term 61.6 11 0.00036 28.4 4.6 35 54-89 12-46 (63)
150 3hct_A TNF receptor-associated 61.5 2.2 7.5E-05 36.3 0.7 30 277-311 19-48 (118)
151 1wji_A Tudor domain containing 61.1 13 0.00045 28.0 5.0 37 53-90 11-47 (63)
152 1iym_A EL5; ring-H2 finger, ub 61.1 3 0.0001 29.8 1.3 35 277-313 6-41 (55)
153 1wfp_A Zinc finger (AN1-like) 60.9 3.6 0.00012 32.2 1.8 28 275-306 24-51 (74)
154 1veg_A NEDD8 ultimate buster-1 60.8 17 0.00057 29.2 5.7 35 54-89 32-66 (83)
155 2jrp_A Putative cytoplasmic pr 60.5 8.1 0.00028 30.8 3.8 25 278-310 33-60 (81)
156 1v87_A Deltex protein 2; ring- 60.0 4.5 0.00015 33.8 2.5 37 233-290 60-96 (114)
157 1wff_A Riken cDNA 2810002D23 p 60.0 4.1 0.00014 32.8 2.0 29 275-306 24-52 (85)
158 2ko5_A Ring finger protein Z; 60.0 2.9 9.9E-05 34.2 1.1 47 115-175 27-74 (99)
159 1rmd_A RAG1; V(D)J recombinati 59.6 2.5 8.5E-05 35.7 0.7 30 277-311 24-53 (116)
160 2c2l_A CHIP, carboxy terminus 59.2 7.5 0.00026 37.6 4.3 15 230-244 222-236 (281)
161 2xeu_A Ring finger protein 4; 58.8 2.3 7.9E-05 31.3 0.3 36 277-312 4-41 (64)
162 2knz_A Ubiquilin-4; cytoplasm, 57.7 21 0.00072 25.8 5.4 37 52-89 12-49 (53)
163 2y1n_A E3 ubiquitin-protein li 57.5 11 0.00037 39.1 5.3 34 230-288 346-379 (389)
164 2ecn_A Ring finger protein 141 57.4 2.9 0.0001 31.6 0.8 31 277-313 16-46 (70)
165 2ea6_A Ring finger protein 4; 55.4 2.7 9.4E-05 31.4 0.3 36 277-312 16-53 (69)
166 1z6u_A NP95-like ring finger p 55.2 3.4 0.00012 36.9 0.9 30 277-311 79-108 (150)
167 2ect_A Ring finger protein 126 54.7 5 0.00017 31.0 1.7 34 277-312 16-49 (78)
168 2kiz_A E3 ubiquitin-protein li 54.3 4 0.00014 30.7 1.1 34 277-312 15-48 (69)
169 1wiv_A UBP14, ubiquitin-specif 54.1 28 0.00095 27.0 5.9 35 55-90 33-67 (73)
170 3bq3_A Defective in cullin ned 52.4 16 0.00054 36.0 5.2 44 47-90 11-54 (270)
171 3hcs_A TNF receptor-associated 50.8 4.1 0.00014 36.8 0.7 30 277-311 19-48 (170)
172 1x4w_A Hypothetical protein FL 49.2 2.6 9E-05 32.4 -0.7 29 275-306 14-44 (67)
173 2hf1_A Tetraacyldisaccharide-1 48.6 10 0.00035 29.1 2.6 27 277-303 9-36 (68)
174 2js4_A UPF0434 protein BB2007; 48.2 11 0.00037 29.2 2.7 30 276-305 8-38 (70)
175 3qt1_I DNA-directed RNA polyme 47.3 5.3 0.00018 35.0 0.8 30 205-237 22-55 (133)
176 2dai_A Ubadc1, ubiquitin assoc 46.8 35 0.0012 27.2 5.5 36 54-90 32-67 (83)
177 2jy5_A Ubiquilin-1; UBA, alter 46.3 34 0.0012 24.6 5.0 36 53-89 14-50 (52)
178 2pk7_A Uncharacterized protein 46.1 13 0.00043 28.8 2.7 27 277-303 9-36 (69)
179 1weo_A Cellulose synthase, cat 45.6 24 0.00083 28.5 4.3 49 115-172 15-68 (93)
180 2dkl_A Trinucleotide repeat co 45.3 37 0.0013 27.2 5.5 38 52-90 22-59 (85)
181 2l0b_A E3 ubiquitin-protein li 45.0 3.6 0.00012 33.2 -0.6 35 277-313 41-75 (91)
182 2ecl_A Ring-box protein 2; RNF 44.2 8 0.00027 30.4 1.4 25 290-314 39-63 (81)
183 2dah_A Ubiquilin-3; UBA domain 43.6 38 0.0013 24.6 4.9 36 53-89 11-47 (54)
184 1wgl_A TOLL-interacting protei 43.0 40 0.0014 25.0 5.0 38 52-89 10-48 (59)
185 2cpw_A CBL-interacting protein 42.2 43 0.0015 25.2 5.1 35 54-89 22-57 (64)
186 1weo_A Cellulose synthase, cat 41.8 17 0.00058 29.4 2.8 53 215-292 21-74 (93)
187 3t7l_A Zinc finger FYVE domain 41.1 22 0.00076 28.7 3.6 38 112-149 16-55 (90)
188 3h0g_I DNA-directed RNA polyme 41.0 17 0.00057 30.8 2.9 28 276-303 4-36 (113)
189 3qt1_I DNA-directed RNA polyme 40.7 11 0.00039 32.9 1.9 30 274-303 22-56 (133)
190 2jny_A Uncharacterized BCR; st 40.6 16 0.00056 27.9 2.6 30 276-305 10-40 (67)
191 1deq_A Fibrinogen (alpha chain 40.4 54 0.0019 33.5 7.0 29 431-459 106-134 (390)
192 2dag_A Ubiquitin carboxyl-term 40.3 52 0.0018 25.5 5.5 36 54-90 12-48 (74)
193 2cp9_A EF-TS, EF-TSMT, elongat 39.7 39 0.0013 25.6 4.4 40 53-92 11-50 (64)
194 4a0k_B E3 ubiquitin-protein li 37.7 6.9 0.00024 33.5 0.0 26 289-314 74-99 (117)
195 3t6p_A Baculoviral IAP repeat- 37.6 24 0.00083 35.9 4.1 28 231-288 310-338 (345)
196 3nyb_B Protein AIR2; polya RNA 37.3 26 0.00087 28.0 3.3 47 236-310 5-55 (83)
197 2akl_A PHNA-like protein PA012 36.5 17 0.00059 31.4 2.3 29 274-303 25-54 (138)
198 2f42_A STIP1 homology and U-bo 35.8 47 0.0016 30.4 5.4 30 206-244 105-134 (179)
199 1twf_I B12.6, DNA-directed RNA 34.9 18 0.00061 31.1 2.2 28 276-303 4-36 (122)
200 3m7n_A Putative uncharacterize 34.9 18 0.00061 33.1 2.4 24 277-302 141-165 (179)
201 1z60_A TFIIH basal transcripti 34.2 11 0.00038 28.1 0.7 34 209-249 17-51 (59)
202 1dv0_A DNA repair protein HHR2 34.1 14 0.00046 26.2 1.1 35 54-89 7-41 (47)
203 1joc_A EEA1, early endosomal a 33.6 25 0.00084 30.3 2.9 39 270-310 62-102 (125)
204 3htk_C E3 SUMO-protein ligase 32.7 16 0.00055 35.7 1.7 30 277-311 182-212 (267)
205 2kpi_A Uncharacterized protein 32.6 28 0.00097 25.5 2.6 25 277-303 11-38 (56)
206 1dvp_A HRS, hepatocyte growth 31.9 17 0.00057 34.4 1.7 32 277-310 162-194 (220)
207 1vek_A UBP14, ubiquitin-specif 31.8 80 0.0027 25.1 5.4 36 54-90 32-68 (84)
208 1whc_A RSGI RUH-027, UBA/UBX 3 31.7 66 0.0022 24.1 4.7 35 55-90 13-48 (64)
209 3dpl_R Ring-box protein 1; ubi 31.7 14 0.00048 30.8 1.0 25 290-314 64-88 (106)
210 1odh_A MGCM1; transcription fa 31.6 32 0.0011 30.9 3.2 19 277-301 111-131 (174)
211 1ee8_A MUTM (FPG) protein; bet 31.4 22 0.00074 34.8 2.4 25 277-301 236-263 (266)
212 2xzf_A Formamidopyrimidine-DNA 30.8 19 0.00066 35.3 2.0 25 277-301 243-270 (271)
213 1y02_A CARP2, FYVE-ring finger 30.8 18 0.00062 31.0 1.5 38 112-149 15-54 (120)
214 4esj_A Type-2 restriction enzy 30.4 29 0.00099 33.2 3.0 36 267-303 26-66 (257)
215 1joc_A EEA1, early endosomal a 30.4 26 0.00088 30.2 2.4 36 114-149 67-104 (125)
216 2jne_A Hypothetical protein YF 30.1 49 0.0017 27.1 3.9 16 277-292 62-77 (101)
217 2xzm_9 RPS31E; ribosome, trans 30.1 22 0.00074 33.0 2.0 30 275-305 112-143 (189)
218 3u6p_A Formamidopyrimidine-DNA 29.8 20 0.00068 35.3 1.8 24 277-300 246-272 (273)
219 1k82_A Formamidopyrimidine-DNA 29.6 21 0.00071 35.0 1.9 24 277-300 241-267 (268)
220 1twf_L ABC10-alpha, DNA-direct 29.5 14 0.00047 28.7 0.5 24 277-301 29-53 (70)
221 1wff_A Riken cDNA 2810002D23 p 29.2 54 0.0018 26.3 3.9 30 114-143 23-52 (85)
222 1k3x_A Endonuclease VIII; hydr 28.8 22 0.00075 34.7 1.9 24 277-300 235-261 (262)
223 2lli_A Protein AIR2; RNA surve 28.7 53 0.0018 27.8 4.2 16 237-252 23-39 (124)
224 2lbm_A Transcriptional regulat 28.6 1E+02 0.0036 27.0 6.1 48 115-170 62-116 (142)
225 1z2q_A LM5-1; membrane protein 28.5 30 0.001 27.4 2.4 37 112-148 17-55 (84)
226 3k9o_A Ubiquitin-conjugating e 28.2 65 0.0022 29.9 5.1 36 53-89 165-200 (201)
227 1dl6_A Transcription factor II 27.6 37 0.0013 25.0 2.6 25 277-301 12-38 (58)
228 2lli_A Protein AIR2; RNA surve 27.5 46 0.0016 28.2 3.6 18 237-254 5-22 (124)
229 2yw8_A RUN and FYVE domain-con 27.4 29 0.00098 27.4 2.1 34 115-148 18-53 (82)
230 3u5c_f 40S ribosomal protein S 27.4 30 0.001 30.9 2.4 30 276-305 118-150 (152)
231 1wr1_B Ubiquitin-like protein 27.1 1.5E+02 0.0053 21.7 5.9 37 52-89 18-55 (58)
232 2yu4_A E3 SUMO-protein ligase 26.9 18 0.00063 29.1 0.9 30 277-311 8-38 (94)
233 1wii_A Hypothetical UPF0222 pr 26.6 29 0.001 27.8 2.0 27 277-303 24-57 (85)
234 2bwb_A Ubiquitin-like protein 26.3 1.5E+02 0.0052 20.5 5.5 36 52-88 8-44 (46)
235 1vej_A Riken cDNA 4931431F19; 26.3 1.4E+02 0.0048 23.1 5.8 37 52-89 30-67 (74)
236 1zbd_B Rabphilin-3A; G protein 26.3 25 0.00084 30.8 1.6 27 118-144 57-86 (134)
237 2zet_C Melanophilin; complex, 26.3 41 0.0014 30.0 3.1 41 276-317 68-109 (153)
238 3e46_A Ubiquitin-conjugating e 25.4 99 0.0034 29.9 5.9 36 53-89 217-252 (253)
239 3zyq_A Hepatocyte growth facto 24.4 38 0.0013 32.1 2.7 34 116-149 164-199 (226)
240 1qxf_A GR2, 30S ribosomal prot 24.0 62 0.0021 24.6 3.2 33 208-243 8-41 (66)
241 2o35_A Hypothetical protein DU 23.6 29 0.001 28.6 1.4 17 139-155 42-58 (105)
242 3fyb_A Protein of unknown func 23.3 30 0.001 28.4 1.4 16 139-154 41-56 (104)
243 1tr8_A Conserved protein (MTH1 23.1 89 0.003 25.8 4.4 31 52-82 66-96 (102)
244 2l2d_A OTU domain-containing p 23.1 2E+02 0.0069 21.6 5.7 39 50-88 16-54 (73)
245 2gvi_A Conserved hypothetical 22.7 43 0.0015 31.3 2.7 64 81-147 138-202 (204)
246 3mjh_B Early endosome antigen 22.3 23 0.00079 23.3 0.5 14 114-127 3-16 (34)
247 1x4u_A Zinc finger, FYVE domai 22.2 42 0.0014 26.5 2.1 35 114-148 12-48 (84)
248 3lay_A Zinc resistance-associa 21.5 4.5E+02 0.015 23.7 9.6 58 423-480 67-129 (175)
249 3v2d_5 50S ribosomal protein L 21.3 24 0.00081 26.4 0.4 13 275-287 29-41 (60)
250 3j20_W 30S ribosomal protein S 21.1 75 0.0026 23.9 3.1 32 208-242 16-48 (63)
251 3h0g_L DNA-directed RNA polyme 21.0 36 0.0012 25.7 1.3 25 277-302 22-47 (63)
252 2kr4_A Ubiquitin conjugation f 21.0 27 0.00091 27.6 0.7 30 277-311 15-44 (85)
253 2zet_C Melanophilin; complex, 20.7 37 0.0013 30.3 1.7 31 115-145 67-100 (153)
254 2a01_A Apolipoprotein A-I; fou 20.6 5.3E+02 0.018 24.2 11.6 25 432-456 163-187 (243)
255 1otr_A Protein CUE2; protein-p 20.6 2.2E+02 0.0075 20.2 5.4 38 52-89 5-43 (49)
256 2ekk_A UBA domain from E3 ubiq 20.4 1.6E+02 0.0054 20.3 4.7 34 54-89 12-45 (47)
257 1vfy_A Phosphatidylinositol-3- 20.2 45 0.0015 25.6 1.8 32 117-148 12-45 (73)
258 2dhy_A CUE domain-containing p 20.0 2.2E+02 0.0074 21.6 5.6 38 52-89 19-57 (67)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.73 E-value=5.1e-19 Score=136.39 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=48.9
Q ss_pred HHHcCCcCCCCCCcceeecCCCCeeEec---cCccccccccccccCCCCccccCCccCCCCcc
Q 008419 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 330 (566)
Q Consensus 271 ~i~~~tK~CPkC~~~IEKn~GCNhm~C~---C~~~FCw~C~~~~~~~H~~~~~~g~~C~~y~~ 330 (566)
||.+++|+||+|+.+|||++|||||+|+ |+++|||+|+++|.. |+ ...|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~-~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc-CC---CccccCCCccc
Confidence 7889999999999999999999999995 999999999999753 21 23589999975
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.63 E-value=1.9e-16 Score=134.05 Aligned_cols=87 Identities=20% Similarity=0.476 Sum_probs=78.2
Q ss_pred cccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCccccccc--chhHHHHHhhcCCChhHHHH
Q 008419 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI--CDEAVVRNLVSKKHPNLAEK 191 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~--~~~~~i~~ll~~~~~e~~~k 191 (566)
+.++|+||+++++...++.+ +|||.||++||+.||..+|.+|...+++||.++|+.. +++..++.+++ ++++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~k 80 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQR 80 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHHH
Confidence 56899999999876666665 7999999999999999999888766899999999999 99999999998 899999
Q ss_pred HHHHHHHhhhhcC
Q 008419 192 FERFLLESFIEDN 204 (566)
Q Consensus 192 y~~~l~~~~v~~~ 204 (566)
|.++++++|++++
T Consensus 81 y~~~~~~~~v~~~ 93 (94)
T 1wim_A 81 YKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHSSCSSC
T ss_pred HHHHHHHhhhccC
Confidence 9999999988754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.24 E-value=4.6e-13 Score=111.27 Aligned_cols=77 Identities=23% Similarity=0.526 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHhhhhcCcccccCCCCCCCCceEEecCCcceeeEec-CCCeeeccccCCC---CCCCCchhhHHHHHh
Q 008419 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEA---HSPCSCSMWDLWAKK 261 (566)
Q Consensus 186 ~e~~~ky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~---H~p~~C~~~~~w~~~ 261 (566)
++++++|++++++++|..++.++||| +|++++..... ...++|+ |+..||+.|+.+| |.|.+|.++++|..+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 67788999999999999999999999 69999886654 4559998 9999999999999 999999999999987
Q ss_pred hhhhH
Q 008419 262 CRDES 266 (566)
Q Consensus 262 ~~~e~ 266 (566)
...++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 65554
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=2.2e-11 Score=108.66 Aligned_cols=115 Identities=26% Similarity=0.589 Sum_probs=76.7
Q ss_pred cccccccccccccC-----CCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHHHHhhcCCChhHH
Q 008419 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLA 189 (566)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~ 189 (566)
+.++|+||++.+.. ..++.++|||.||..||..|+... ..||. |+..+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCccccccccc--------
Confidence 46899999999761 122788999999999999998742 38998 98877654322211
Q ss_pred HHHHHHHHHhhhhcCcccccCCCCCCCCceEEecC-CcceeeEecCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHH
Q 008419 190 EKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE-VEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESET 268 (566)
Q Consensus 190 ~ky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~ 268 (566)
+ +.....|| -|...+.... .....+..+||+.||..|... |..
T Consensus 68 -----------i--~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~-------- 111 (133)
T 4ap4_A 68 -----------I--GSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK-------- 111 (133)
T ss_dssp -----------C--SSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH--------
T ss_pred -----------c--CCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHH------------HHH--------
Confidence 1 12334687 4865544211 111225567999999999653 321
Q ss_pred HHHHHcCCcCCCCCCcceeec
Q 008419 269 VNWITVHTKPCPKCHKPVEKN 289 (566)
Q Consensus 269 ~~~i~~~tK~CPkC~~~IEKn 289 (566)
. .+.||.|+..|.++
T Consensus 112 -----~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 -----N-ANTCPTCRKKINHK 126 (133)
T ss_dssp -----H-CSBCTTTCCBCCGG
T ss_pred -----c-CCCCCCCCCcCChh
Confidence 1 27999999999865
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-11 Score=100.69 Aligned_cols=65 Identities=26% Similarity=0.587 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhhhhcCcccccCCCCCCCCceEEecCCcceeeEe------cCCCeeeccccCCCCCCCCchh
Q 008419 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVEC------ACGAQFCFSCLSEAHSPCSCSM 254 (566)
Q Consensus 186 ~e~~~ky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~Cg~~fC~~C~~~~H~p~~C~~ 254 (566)
++++++|++++++++|+.+. ++||| .|+|++++..+.+ ...+.| .|+..||+.|+.+||. .+|..
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~~-~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEPD-QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCSC-TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECCC-CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 78889999999999999886 99999 6999999987653 345899 5999999999999999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.61 E-value=2.9e-08 Score=92.72 Aligned_cols=84 Identities=27% Similarity=0.511 Sum_probs=58.7
Q ss_pred CccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHHHHhhcCCChhHHHHH
Q 008419 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~~ky 192 (566)
..+.+.|+||++.+. +++.++|||.||..||..++.... ..||. |+..+.... +.. ...+
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~---~~~---~~~~--- 74 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQ---LFP---DNFA--- 74 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGG---CEE---CHHH---
T ss_pred CCCCCCCCCCChhhc--CcEECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhh---hhh---hHHH---
Confidence 446799999999976 788899999999999999997531 38998 888776532 222 1111
Q ss_pred HHHHHHhhhhcCcccccCCCCCCCCceEEecC
Q 008419 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (566)
Q Consensus 193 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (566)
+..+. .....|| +.+|+..+....
T Consensus 75 -----~~~i~--~l~v~C~-n~GC~~~~~~~~ 98 (170)
T 3hcs_A 75 -----KREIL--SLMVKCP-NEGCLHKMELRH 98 (170)
T ss_dssp -----HHHHH--TSEEECC-STTCCCEEEGGG
T ss_pred -----HHHHh--hcccCCC-CCCCCceecHhH
Confidence 11111 1345899 579998887654
No 7
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.4e-07 Score=72.90 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=37.7
Q ss_pred CccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCc
Q 008419 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~ 165 (566)
....+.|+||++.+. +++.++|||.||..|+..|+.. .. ...+||.
T Consensus 17 ~~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--~~---~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGET--SC---GFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHHH--CS---SCCCCSC
T ss_pred CccCCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHHc--CC---CCCcCcC
Confidence 345789999999977 7888999999999999999985 11 2368987
No 8
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.47 E-value=2.3e-08 Score=80.86 Aligned_cols=57 Identities=25% Similarity=0.568 Sum_probs=45.1
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.++|||.||..|+..|+......+. ....||. |+..+...
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSS
T ss_pred ccCCCCcCCCcccC--CeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHh
Confidence 35689999999976 7788999999999999999987543222 3579999 99877543
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=76.90 Aligned_cols=56 Identities=27% Similarity=0.679 Sum_probs=45.5
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.++|||.||..|+..|+......+. ...||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCSS
T ss_pred cCCCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCHH
Confidence 45689999999976 7788899999999999999988654332 489999 98876643
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=6.2e-08 Score=77.11 Aligned_cols=53 Identities=30% Similarity=0.693 Sum_probs=42.6
Q ss_pred CccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
....+.|+||++.+. +++.++|||.||..|+..|+... . ....||. |+..+..
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS--C---GFFKCPL--CKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHCSSS--C---SCCCCSS--SCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEcCCCChhhHHHHHHHHHcC--C---CCCCCCC--CCCcCCc
Confidence 345789999999877 78889999999999999998731 1 2479999 9887654
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=9e-08 Score=74.77 Aligned_cols=51 Identities=22% Similarity=0.611 Sum_probs=41.6
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQTECGHRFCESCMAALLSS----S---SPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES--SCCCCSSSCCCCHHHHHHHHTT----S---SCCCTT--TCCCCCTT
T ss_pred CcCCCCCCCChHhc--CeeECCCCCHHHHHHHHHHHHh----C---cCCCCC--CCcCCChh
Confidence 45789999999976 7777999999999999999861 2 268999 98876543
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.43 E-value=8.2e-08 Score=80.10 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=41.1
Q ss_pred ccccccccccccccCCCceecC-CCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 114 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
...+.|+||++.+. +++.++ |||.||..|+..++... + ...||. |+..+
T Consensus 11 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--SCEECTTTCCEECHHHHHHHHHHC---T---TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHHhc---C---CCcCcC--CCCcC
Confidence 45789999999977 889998 99999999999999742 2 268999 88765
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.41 E-value=2e-07 Score=76.14 Aligned_cols=56 Identities=27% Similarity=0.607 Sum_probs=44.9
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.++|||.||..|+..|+......+ ....||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 45689999999976 778899999999999999998754222 2489998 98876643
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=8.6e-08 Score=79.05 Aligned_cols=61 Identities=26% Similarity=0.679 Sum_probs=46.9
Q ss_pred ccccccccccccccCCC--ceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHHHHhh
Q 008419 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLV 181 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll 181 (566)
...+.|+||++.+.... ++.++|||.||..|+..|+.... ....||. |+..+....+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTT--TCCCBCCSSTTTSE
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCC--CCCcccchhHHHHH
Confidence 35689999999987332 78889999999999999998641 2379999 99877665544433
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-07 Score=74.39 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=44.6
Q ss_pred CCccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHHH
Q 008419 112 PLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVR 178 (566)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~ 178 (566)
+......|+||++.+. +++.++|||.||..|+..|+... ..||. |+..+....+.
T Consensus 11 ~~~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~ 65 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV--HPVSLPCKHVFCYLCVKGASWLG--------KRCAL--CRQEIPEDFLD 65 (71)
T ss_dssp SSSSCCBCSSSSSBCS--SEEEETTTEEEEHHHHHHCTTCS--------SBCSS--SCCBCCHHHHS
T ss_pred cCCCCCCCccCCcccC--CCEEccCCCHHHHHHHHHHHHCC--------CcCcC--cCchhCHhhcc
Confidence 3446789999999976 78888999999999999998641 58999 99988766543
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.38 E-value=9.3e-08 Score=77.20 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=42.4
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.++|||.||..|+..|+.. |. ..||. |+..+...
T Consensus 6 ~~~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~~----~~---~~CP~--C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPVIVSTGQTYERSSIQKWLDA----GH---KTCPK--SQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHTT----TC---CBCTT--TCCBCSSC
T ss_pred cccCCCCCcccccc--CCEEcCCCCeecHHHHHHHHHH----Cc---CCCCC--CcCCCChh
Confidence 35789999999976 8899999999999999999963 22 68999 88876543
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.36 E-value=2.2e-07 Score=75.35 Aligned_cols=53 Identities=28% Similarity=0.557 Sum_probs=40.9
Q ss_pred ccccccccccccccCCCceecC--CCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
.+.++|+||++.+...++..++ |||.||..||..++.. + ...||. |+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~---~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E---NGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S---CSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C---CCCCCC--CCCccCCC
Confidence 3568999999988644555444 9999999999999863 2 268999 99877654
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=2e-07 Score=78.34 Aligned_cols=56 Identities=25% Similarity=0.448 Sum_probs=44.7
Q ss_pred cccccccccccccCCCceecC-CCCccchhhHHHHHHhhhccCCcceeecCccccccc-chh
Q 008419 115 STVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI-CDE 174 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~-~~~ 174 (566)
..+.|+||++.+. +|+.++ |||.||+.|+..||...-.. .....||..+|... +..
T Consensus 6 ~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~--~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKR--KKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTT--TCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCc--CCCCCCCcCcCcccccCH
Confidence 5689999999977 899995 99999999999999864211 12479999999865 543
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.33 E-value=4.1e-07 Score=72.78 Aligned_cols=49 Identities=20% Similarity=0.714 Sum_probs=40.9
Q ss_pred CccccccccccccccCCCceecC-CCCccchhhHHHHHHhhhccCCcceeecCccccccc
Q 008419 113 LSSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI 171 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~ 171 (566)
....+.|+||++.+. +++.++ |||.||..|+..|+... + ...||. |+..
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~ 61 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQN 61 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCS
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCc
Confidence 346789999999977 788898 99999999999999852 2 268999 8874
No 20
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.31 E-value=1.8e-07 Score=81.63 Aligned_cols=82 Identities=22% Similarity=0.558 Sum_probs=56.4
Q ss_pred cccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHHHHhhcCCChhHHHHHHH
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFER 194 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~~ky~~ 194 (566)
..+.|+||++.+. +++.++|||.||..|+..++... ...||. |+..+....+...+ ..+.+.
T Consensus 22 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~l~~~--- 83 (116)
T 1rmd_A 22 KSISCQICEHILA--DPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KSFLNI--- 83 (116)
T ss_dssp HHTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HHHHHH---
T ss_pred CCCCCCCCCcHhc--CcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HHHHHH---
Confidence 5689999999976 78889999999999999999862 258998 99887654322111 111111
Q ss_pred HHHHhhhhcCcccccCCCCCCCCceEEec
Q 008419 195 FLLESFIEDNKMVKWCPSTPHCGNAIRVE 223 (566)
Q Consensus 195 ~l~~~~v~~~~~~~~CP~~p~C~~~i~~~ 223 (566)
+. ....+|| ..+|+..+...
T Consensus 84 ------i~--~l~v~C~-~~gC~~~~~~~ 103 (116)
T 1rmd_A 84 ------LN--SLMVKCP-AQDCNEEVSLE 103 (116)
T ss_dssp ------HH--HCEEECC-STTCCCEEEHH
T ss_pred ------HH--HhcCCCC-CCCCcchhhHh
Confidence 11 1234799 46898877644
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=2.6e-07 Score=79.82 Aligned_cols=54 Identities=24% Similarity=0.600 Sum_probs=43.3
Q ss_pred cccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHH
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVV 177 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i 177 (566)
..+.|+||++.+. +++.++|||.||..|+..++... .+ ...||. |+..+....+
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~~---~~~CP~--Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCDHIFCKFCMLKLLNQK--KG---PSQCPL--CKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTSCCCCSHHHHHHHHSS--SS---SCCCTT--TSCCCCTTTC
T ss_pred CCCCCcccChhhc--CeEECCCCCHHHHHHHHHHHHhC--CC---CCCCcC--CCCcCCHhhc
Confidence 3578999999876 77889999999999999999853 22 378999 9987765443
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.30 E-value=5.7e-07 Score=78.74 Aligned_cols=84 Identities=26% Similarity=0.497 Sum_probs=58.6
Q ss_pred CccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHHHHHhhcCCChhHHHHH
Q 008419 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~~ky 192 (566)
....+.|+||++.+. +++.++|||.||..|+..++...- ..||. |+..+.... +.. ...
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~---~~~---~~~---- 73 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQ---LFP---DNF---- 73 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGG---CEE---CHH----
T ss_pred CCCCCCCCcCChhhc--CeEECCcCChhhHHHHHHHHhhCC-------CCCCC--CCCCcCHHh---ccc---CHH----
Confidence 446789999999976 788899999999999999987531 38998 888776532 222 111
Q ss_pred HHHHHHhhhhcCcccccCCCCCCCCceEEecC
Q 008419 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (566)
Q Consensus 193 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (566)
+++.+. .....|| +.+|+..+....
T Consensus 74 ----l~~~i~--~l~v~C~-n~gC~~~~~~~~ 98 (118)
T 3hct_A 74 ----AKREIL--SLMVKCP-NEGCLHKMELRH 98 (118)
T ss_dssp ----HHHHHH--TSEEECS-STTCCCEEEGGG
T ss_pred ----HHHHHc--cceeECC-CCCCCCEEeeHH
Confidence 111122 2345899 589998877554
No 23
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.29 E-value=3.2e-07 Score=79.84 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=42.6
Q ss_pred CccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
....+.|+||++.+. +++.++|||.||..|+..++.. +. ..||. |+..+..
T Consensus 12 ~~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~~---~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILV--EPVTLPCNHTLCKPCFQSTVEK----AS---LCCPF--CRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCS--SCEECTTSCEECHHHHCCCCCT----TT---SBCTT--TCCBCHH
T ss_pred CCCCCCCccCCcccC--ceeEcCCCCHHhHHHHHHHHhH----Cc---CCCCC--CCcccCc
Confidence 446789999999976 7899999999999999998853 22 68999 9987764
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.28 E-value=2.2e-07 Score=79.03 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=42.8
Q ss_pred cccccccccccccCCCcee-cCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHH
Q 008419 115 STVMCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~ 176 (566)
+.+.|+||++.+. +++. ++|||.||..|+..|+... . ..||. |+..+....
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~----~---~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ----R---AQCPH--CRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT----C---SBCTT--TCCBCCGGG
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC----c---CCCCC--CCCcCCHHH
Confidence 4689999999986 7888 8999999999999999863 1 58999 998776543
No 25
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.27 E-value=4.7e-07 Score=81.93 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=40.4
Q ss_pred CccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
....+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+
T Consensus 28 l~~~~~C~IC~~~~~--~pv~~~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLR--RPFQAQCGHRYCSFCLASILSS----G---PQNCAA--CVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHGGG----S---CEECHH--HHHTT
T ss_pred CCcCcCCCCCChhhc--CcEECCCCCccCHHHHHHHHhc----C---CCCCCC--CCCcc
Confidence 346789999999976 7888999999999999999863 2 268998 87654
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=6e-07 Score=72.98 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=40.8
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
...+.|+||++.+. +++.++|||.||..|+..++.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--NPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchhc--CeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 35689999999976 7888999999999999999964 258999 988765
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=6.6e-07 Score=67.62 Aligned_cols=45 Identities=27% Similarity=0.729 Sum_probs=36.2
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCc
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~ 165 (566)
.....|+||++.+. +++.++|||.||..|+..|+... . ....||.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL--E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS--C---CSCCCSC
T ss_pred ccCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc--C---CCCCCCC
Confidence 35689999999976 67889999999999999998641 1 2368886
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=80.74 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=41.4
Q ss_pred cccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
..+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPITTVCQHNVCKDCLDRSFRA----Q---VFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT----T---CCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHc--CcEEeeCCCcccHHHHHHHHhH----C---cCCCCC--CCccCCC
Confidence 4678999999977 8899999999999999999972 2 268999 9887754
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=9e-07 Score=70.28 Aligned_cols=50 Identities=32% Similarity=0.830 Sum_probs=41.2
Q ss_pred ccccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcc
Confidence 45789999999876 67776 99999999999999965 158998 98876543
No 30
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.23 E-value=5.9e-07 Score=67.13 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=38.7
Q ss_pred cccccccccccccC--CCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 115 STVMCDICMEEVAG--DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 115 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
....|+||++.+.. ..+..++|||.||..|+..|+... ..||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcC
Confidence 45789999999753 236778999999999999999863 57998 87655
No 31
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.23 E-value=7.1e-07 Score=73.54 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=42.4
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +++.++|||+||+.|+..||.. . ..||. |+..+...
T Consensus 12 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~~-----~---~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DPVRLPSGTVMDRSIILRHLLN-----S---PTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHH-----C---SBCTT--TCCBCCGG
T ss_pred chheECcccCchhc--CCeECCCCCEECHHHHHHHHhc-----C---CCCCC--CcCCCChH
Confidence 45799999999977 9999999999999999999984 1 47999 88776543
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.21 E-value=1.4e-07 Score=74.44 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=40.5
Q ss_pred ccccccccccccccC-----CCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
.+...|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChh
Confidence 356899999998752 122778999999999999998742 48998 98876644
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.21 E-value=4e-07 Score=77.04 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=40.4
Q ss_pred cccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
..+.|+||++.+. +++.+ +|||.||..|+..|+.. . ..||. |+..+..
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-----~---~~CP~--Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY-----K---TQCPT--CCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT-----C---CBCTT--TCCBCCG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC-----C---CCCCC--CCCcCCh
Confidence 4689999999977 67777 99999999999999874 1 58998 9987764
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.18 E-value=5e-07 Score=81.39 Aligned_cols=46 Identities=30% Similarity=0.717 Sum_probs=38.6
Q ss_pred ccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 116 TVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.++|+||++.+. +++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 53 ~~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFI--EAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCS--SEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccC--CceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 468999999976 8899999999999999999863 147999 887653
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=8.5e-07 Score=69.37 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=39.1
Q ss_pred ccccccccccccccCC-----CceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGD-----KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|+||++.+... .++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 4568999999987521 1277899999999999999875 148998 887654
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.16 E-value=2.2e-07 Score=71.71 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=40.0
Q ss_pred cccccccccccccC-----CCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
+...|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCcc
Confidence 35789999998752 12367799999999999999875 148998 98877654
No 37
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.2e-06 Score=86.19 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=45.5
Q ss_pred CccccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 113 LSSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
....+.||||++.+. +|++. .|||.||+.|+..||.. .|. ..||..||+..+...
T Consensus 178 ~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~---~~~---~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQG---YTT---RDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTT---CSC---EECSGGGCSCEECGG
T ss_pred CceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHh---CCC---CCCCcccccCcCchh
Confidence 346789999999987 88875 99999999999999974 233 799999999876543
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.15 E-value=2.7e-07 Score=71.81 Aligned_cols=52 Identities=21% Similarity=0.478 Sum_probs=38.9
Q ss_pred ccccccccc-cccCCC--ceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHH
Q 008419 116 TVMCDICME-EVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (566)
Q Consensus 116 ~~~C~IC~e-~~~~~~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~ 176 (566)
...|+||++ .+.... ++.++|||.||..|+..++.. +. ..||. |+..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~---~~CP~--Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----GA---GNCPE--CGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----TS---SSCTT--TCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----CC---CcCCC--CCCcccccc
Confidence 478999999 554211 246799999999999999864 22 68998 998776543
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=80.14 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=42.2
Q ss_pred cccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
..+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVTTECFHNVCKDCLQRSFKA----Q---VFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT----T---CCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhc--CCEEcCCCCchhHHHHHHHHHh----C---CCcCCC--CCccCCCC
Confidence 4589999999976 8889999999999999999984 2 268999 98877654
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.08 E-value=1.3e-06 Score=75.12 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=39.7
Q ss_pred cccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
..+.|+||++.+. +++.+ +|||.||..|+..++... ..||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSC
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCcccc
Confidence 4689999999976 78887 999999999999998752 58998 887654
No 41
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.07 E-value=3.4e-06 Score=66.18 Aligned_cols=50 Identities=20% Similarity=0.574 Sum_probs=39.6
Q ss_pred ccccccccccccccC-CCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAG-DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|+||++.+.. ..+..++|||.||..|+..|+... ..||. |+..+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCcccc
Confidence 346789999998754 356778999999999999998751 36998 887654
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=6.1e-07 Score=78.41 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=39.2
Q ss_pred cccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
..+.|+||++.+. +++.+ +|||.||..|+..++. ..||. |+..+..
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSC
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCcc
Confidence 4588999999976 78888 9999999999999976 47998 8887643
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.04 E-value=2.3e-06 Score=72.77 Aligned_cols=49 Identities=6% Similarity=-0.013 Sum_probs=42.1
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
...+.|+||++.+. +|+.++|||+||+.|+..||.. . ..||. |+..+..
T Consensus 27 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~~-----~---~~cP~--~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--DPVRLPSGTIMDRSIILRHLLN-----S---PTDPF--NRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS--SEEEETTTEEEEHHHHHHHTTS-----C---SBCSS--SCCBCCT
T ss_pred cHhhCCcCccCccc--CCeECCCCCEEchHHHHHHHHc-----C---CCCCC--CCCCCCh
Confidence 46799999999977 9999999999999999999974 1 57999 8877654
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.04 E-value=8.2e-07 Score=67.07 Aligned_cols=44 Identities=23% Similarity=0.605 Sum_probs=36.3
Q ss_pred cccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
+.+.|+||++.+. +++.++|||.||..|+.. . ...||. |+..+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~--------~---~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA--------S---GMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS--------S---SSSCSS--CCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc--------C---CCCCCc--CCcEee
Confidence 4678999999987 788899999999999866 1 368999 887654
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.01 E-value=2.9e-06 Score=71.82 Aligned_cols=50 Identities=4% Similarity=-0.065 Sum_probs=42.6
Q ss_pred ccccccccccccccCCCceecCCC-CccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCG-HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...+.|+||++.+. +|+.++|| |.||+.|+..||.. . ..||. |+..+...
T Consensus 20 p~~~~CpI~~~~m~--dPV~~~cG~htf~r~cI~~~l~~-----~---~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--DPVVLPSSRVTVDRSTIARHLLS-----D---QTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHTTT-----S---CBCTT--TCSBCCTT
T ss_pred cHhcCCcCcccccc--CCeECCCCCeEECHHHHHHHHHh-----C---CCCCC--CCCCCChh
Confidence 46799999999977 99999999 99999999999984 1 47999 88877643
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.96 E-value=3.7e-06 Score=70.00 Aligned_cols=51 Identities=24% Similarity=0.532 Sum_probs=39.9
Q ss_pred ccccccccccccccCCC-ceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 114 SSTVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
.....|+||++.+.... +..++|||.||..|+..|+.. . ..||. |+..++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~---~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----S---GTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----T---CBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----C---CcCcC--cCccCCC
Confidence 35678999999986433 566899999999999999863 1 38999 9876653
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.95 E-value=3.4e-06 Score=62.96 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=37.5
Q ss_pred cccccccccccccCC-CceecC-CCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 115 STVMCDICMEEVAGD-KATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
+...|+||++.+... .+..++ |||.||..|+..|+.. ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 457899999998643 356676 9999999999999854 147998 88654
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.94 E-value=4.8e-06 Score=72.10 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=38.5
Q ss_pred ccccccccccccCC----------------CceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
...|+||++.+... ....++|+|.||..|+..|+...-.. ....||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 35899999997531 11256999999999999999643212 2378999 987664
No 49
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.93 E-value=5.3e-06 Score=66.69 Aligned_cols=52 Identities=21% Similarity=0.489 Sum_probs=40.4
Q ss_pred ccccccccccccccCC-CceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
.....|+||++.+... .+..++|||.||..|+..|+... ..||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCCc
Confidence 3568999999997643 34567999999999999998641 48999 98876543
No 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.89 E-value=5.1e-06 Score=64.86 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=37.9
Q ss_pred cccccccccccccCCC-ceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
....|+||++.+. + .+.++|||.||..|+..|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 3568999999975 4 4778999999999999998641 48999 887664
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3.2e-06 Score=66.47 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=38.1
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|+||++.+. + +.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTT
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCccc
Confidence 34689999999976 4 77899999999999998762 258998 876554
No 52
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=8.5e-06 Score=64.76 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=39.0
Q ss_pred ccccccccccccccCC-CceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|+||++.+... ....++|||.||..|+..|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 3467899999997643 34456999999999999999752 37999 887654
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.86 E-value=5.5e-06 Score=76.75 Aligned_cols=49 Identities=29% Similarity=0.701 Sum_probs=40.4
Q ss_pred ccccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
...+.|+||++.+. +++.+ +|||.||..|+..++.. +. ..||. |+..+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~~---~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----GN---KECPT--CRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----TC---CBCTT--TCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----Cc---CCCCC--CCCcCC
Confidence 35679999999977 67776 99999999999999874 22 68999 887663
No 54
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=6.8e-06 Score=65.62 Aligned_cols=50 Identities=22% Similarity=0.536 Sum_probs=39.4
Q ss_pred ccccccccccccccCCC-ceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|+||++.+.... +..++|||.||..|+..|+... ..||. |+..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCC
Confidence 35678999999976433 3567999999999999998641 37999 887664
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.85 E-value=7.1e-06 Score=81.93 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=42.5
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
+..+.|+||++.+. +|+.++|||+||+.|+..||.. .+ ..||. |+..+...
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~~~gh~f~~~~i~~~~~~---~~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQR---VG----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEECSSCCEEETTHHHHHHHH---TC----SSCTT--TCCCCCGG
T ss_pred CcccCCcCcCCHhc--CCeECCCCCEECHHHHHHHHHH---CC----CCCcC--CCCCCchh
Confidence 45799999999977 9999999999999999999975 12 24999 88877643
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.75 E-value=1.3e-05 Score=75.09 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=42.7
Q ss_pred ccccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
+..+.||||++.+. +|+.++|||+||+.|+..||... |. .||. |+..+...
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~Ghtfer~~I~~~l~~~---~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQRV---GH----FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT---CS----BCTT--TCCBCCGG
T ss_pred cHhhcccCccccCC--CCeECCCCCEECHHHHHHHHHhC---CC----CCCC--CcCCCChh
Confidence 36799999999977 89999999999999999999752 32 6999 88777653
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.71 E-value=8.7e-06 Score=65.04 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=35.9
Q ss_pred cccccccccccccCCCceecCCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 23 ~~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBC--CEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCCC--CEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 3578999999866 7888999999 999998765 47998 887654
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=1.8e-05 Score=63.30 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=35.0
Q ss_pred cccccccccccccCCCceecCCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
....|+||++.+. +++.++|||. ||..|+... ..||. |+..+.
T Consensus 24 ~~~~C~IC~~~~~--~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCC--CBCCSSSCCCCBCHHHHHHC------------SBCTT--TCCBCC
T ss_pred CCCCCCcCCCCCC--CEEEecCCCHHHHHHHhhCC------------CCCcc--CCceec
Confidence 4578999999866 7888999999 999998521 58999 887664
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=5.4e-05 Score=61.45 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=35.3
Q ss_pred cccccccccccccC------------CCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAG------------DKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
+..+|+||++.+.. +.+..+ +|||.||..|+..++... -.||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcc
Confidence 34567777777642 224455 599999999999998752 38999 887654
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.41 E-value=5.4e-05 Score=58.64 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=38.2
Q ss_pred CCccccccccccccccCCCceec--CCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 112 PLSSTVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
|......|.||++... +++.+ +|||. ||..|...++.. + -.||. |+..+.
T Consensus 4 ~~~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 56 (64)
T 2vje_A 4 PLNAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR----N----KPCPV--CRQPIQ 56 (64)
T ss_dssp -CGGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT----T----CCCTT--TCCCCC
T ss_pred CCCCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc----C----CcCCC--cCcchh
Confidence 3445678999999865 66665 99999 899999988753 1 37999 887653
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.35 E-value=4.5e-05 Score=61.76 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=35.3
Q ss_pred ccccccccccccCCCceecCCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 116 TVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
...|+||++... +++.++|||. ||..|+..+ ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccC--cEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 468999999866 7888999999 999998754 28998 9886653
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.35 E-value=8.9e-05 Score=77.38 Aligned_cols=47 Identities=26% Similarity=0.558 Sum_probs=38.9
Q ss_pred cccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 117 VMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 117 ~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
..|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+..
T Consensus 333 ~~C~ICle~~~--~pv~lpCGH~FC~~Ci~~wl~~----~---~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK--DVKIEPCGHLMCTSCLTSWQES----E---GQGCPF--CRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC--CEEEETTCCEECHHHHHHHHHH----T---CSBCTT--TCCBCCE
T ss_pred CCCCccCcCCC--CeEEeCCCChhhHHHHHHHHhc----C---CCCCCC--CCCccCC
Confidence 68999999876 7888999999999999998873 1 258999 8876543
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00016 Score=56.68 Aligned_cols=44 Identities=18% Similarity=0.584 Sum_probs=35.7
Q ss_pred ccccccccccccccCCCceecCCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|.||++... +++.++|||. ||..|.... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~------------~~CP~--CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKYF------------QQCPM--CRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCC--CCEETTTTBCCSCTTHHHHC------------SSCTT--TCCCCC
T ss_pred CCCCCCCCcCcCCC--CEEEECCCChhhhHHHHhcC------------CCCCC--CCcchh
Confidence 35678999999865 7888999999 999999831 47998 887654
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00023 Score=57.66 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=41.5
Q ss_pred ccccccccccccccCCCceecCCC-----CccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCG-----HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
.....|.||++++..++...++|+ |.|+..|+..|+... + ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeee
Confidence 345789999998876666678996 999999999999863 2 268999 887654
No 65
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.27 E-value=8.5e-05 Score=61.16 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=39.2
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCccccccccccccCCCCccccCCccCCCCc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDHTWSRIAGHSCGRYK 329 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~~~H~~~~~~g~~C~~y~ 329 (566)
.+-||.|...+....+-..++| .|++.||+.|+.+|...| .|..|..|+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H-----~~~sC~~~~ 74 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH-----RGRSCEDFQ 74 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT-----TTSCHHHHH
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC-----CCCChHHHH
Confidence 4569999999988888888999 599999999999984434 456676554
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.25 E-value=0.00012 Score=56.40 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=36.5
Q ss_pred cccccccccccccCCCceec--CCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
....|.||++... +++.+ +|||. ||..|...++.. + -+||. |+..+.
T Consensus 6 ~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKA----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHT----T----CBCTT--TCCBCC
T ss_pred cCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHh----C----CcCCC--cCchhh
Confidence 4578999999755 55555 99998 999999987753 1 48999 887653
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.17 E-value=9.5e-05 Score=65.09 Aligned_cols=54 Identities=28% Similarity=0.638 Sum_probs=41.6
Q ss_pred CccccccccccccccC-----CCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhHH
Q 008419 113 LSSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~ 176 (566)
......|+||++.+.. ..++.++|||.||..|+..|+... -.||. |+..+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhc
Confidence 3456889999998752 123677999999999999998751 48999 998776553
No 68
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.94 E-value=0.00043 Score=59.18 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=36.7
Q ss_pred cccccccccccccCC----------------CceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 115 STVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
...+|+||++.+... ....++|+|.|+..|+..|+.. . ..||. |+..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----~---~~CP~--Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----R---QVCPL--DNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-----C---SBCSS--SCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-----C---CcCcC--CCCcc
Confidence 346799999887632 1345699999999999999875 1 47998 88764
No 69
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.76 E-value=0.0005 Score=55.70 Aligned_cols=38 Identities=32% Similarity=0.627 Sum_probs=34.4
Q ss_pred CcCCCC--CCcceeecCCCCeeEe------ccCccccccccccccC
Q 008419 276 TKPCPK--CHKPVEKNGGCNLVSC------ICGQAFCWLCGGATGR 313 (566)
Q Consensus 276 tK~CPk--C~~~IEKn~GCNhm~C------~C~~~FCw~C~~~~~~ 313 (566)
.+-||. |+..|....+...++| .||+.||+.|+..||.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 588998 9999998889999999 6999999999999753
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.74 E-value=0.00037 Score=72.07 Aligned_cols=43 Identities=26% Similarity=0.755 Sum_probs=36.1
Q ss_pred cccccccccccccCCCceecCCCCc-cchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 294 ~~~~C~IC~~~~~--~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV--SVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC--CEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcCC--ceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 4578999999876 8889999999 999998754 47999 887654
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.20 E-value=0.00078 Score=58.59 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=0.4
Q ss_pred ccccccccccccCC----------------CceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
..+|.||++.+... ..+.++|+|.|+..|+..|+... -.||. |+..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREWE 111 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCeee
Confidence 46899999997531 11224899999999999998761 47998 887653
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.18 E-value=0.0028 Score=64.57 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=42.7
Q ss_pred ccccccccccccccC-CCce-----ecCCCCccchhhHHHHHHhhhccCCcce---eecCcccccccchhH
Q 008419 114 SSTVMCDICMEEVAG-DKAT-----KMDCGHCFCNDCWTEHFIVKINEGQSKR---IRCMAHKCNAICDEA 175 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~yl~~~i~~g~~~~---i~CP~~~C~~~~~~~ 175 (566)
.....|+||++.+.. .... ...|+|.|...|+..|+.+.-...+++. =.||. |+..++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 356789999998653 2221 2479999999999999987654433322 37998 99877644
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.48 E-value=0.0054 Score=46.79 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=37.4
Q ss_pred ccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccchh
Q 008419 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (566)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (566)
.+.|+||++.+. +++.+ +|||.|++.|+..|+... | +||. .+..+..
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCG
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCCh
Confidence 478999999977 88888 999999999999999852 2 3888 5555543
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.18 E-value=0.0077 Score=47.85 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=37.4
Q ss_pred cccccccccccccCCCceecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
....|.||.+.+.... .-..|+|.|...|+..||...- . -.||. |+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~---~---~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA---E---PRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS---S---CCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC---C---CCCCC--CcCcCC
Confidence 3568999999986432 2238999999999999997531 1 47998 887654
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.92 E-value=0.14 Score=36.27 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
+++.|..-+.+.|.++..|+.+|..++||.+.-+..|++.
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5567888999999999999999999999999999999964
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.84 E-value=0.008 Score=50.39 Aligned_cols=75 Identities=23% Similarity=0.422 Sum_probs=47.3
Q ss_pred eeeEec-CCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCC-CcceeecCCCCeeEe-ccCcccc
Q 008419 228 CEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKC-HKPVEKNGGCNLVSC-ICGQAFC 304 (566)
Q Consensus 228 ~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC-~~~IEKn~GCNhm~C-~C~~~FC 304 (566)
+...|. |+++||..|...+|....-...+.......+. ......|+.+ +.+++ ++| .|+..+|
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~-------~~~~~~C~~H~~e~l~-------~fC~~~~~~iC 82 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDS-------HIRGLMCLEHEDEKVN-------MYCVTDDQLIC 82 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSC-------CSSCCCCSSCSSSCCC-------EEETTTTEEEC
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeecccccc-------CccCCcCcCcCCCcce-------EECCCCCCccc
Confidence 447896 99999999988767632211111111111000 1123579999 58887 999 5999999
Q ss_pred ccccc-cccCCCC
Q 008419 305 WLCGG-ATGRDHT 316 (566)
Q Consensus 305 w~C~~-~~~~~H~ 316 (566)
+.|.. .-+++|.
T Consensus 83 ~~C~~~~~H~~H~ 95 (101)
T 2jun_A 83 ALCKLVGRHRDHQ 95 (101)
T ss_dssp HHHHHHTTTSSSC
T ss_pred hhcCCCCCcCCCC
Confidence 99986 4444453
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.09 E-value=0.047 Score=45.50 Aligned_cols=44 Identities=27% Similarity=0.530 Sum_probs=29.6
Q ss_pred ccccccccccCCCce-ecCCCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 118 MCDICMEEVAGDKAT-KMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 118 ~C~IC~e~~~~~~~~-~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
-|++|--.+. ... .+||.|.||.+|...+..... -.||. |+..+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBC
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCee
Confidence 4777755443 333 459999999999999876422 25776 66544
No 78
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.25 E-value=0.33 Score=36.93 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 49 AAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 49 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
..|++.|..-+.+.+.++..|+.+|..++||.+.-+..|++.
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 346778889999999999999999999999999999999964
No 79
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.16 E-value=0.12 Score=39.17 Aligned_cols=49 Identities=20% Similarity=0.546 Sum_probs=35.8
Q ss_pred cccccccccccccCCCceecCCC--C---ccchhhHHHHHHhhhccCCcceeecCcccccccch
Q 008419 115 STVMCDICMEEVAGDKATKMDCG--H---CFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 173 (566)
+...|.||+++.. +...+||. | .|...|+..|+..+ +. ..||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~~---~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS---RN---TACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH---TC---SBCTT--TCCBCC
T ss_pred CCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC---CC---CccCC--CCCeee
Confidence 4568999998743 33456755 4 89999999999863 22 68999 887653
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.10 E-value=0.19 Score=39.86 Aligned_cols=54 Identities=26% Similarity=0.524 Sum_probs=40.7
Q ss_pred CccccccccccccccCCCceecC--CCCccchhhHHHHHHhhhccCCcceeecCcc-ccc
Q 008419 113 LSSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMAH-KCN 169 (566)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~-~C~ 169 (566)
....+.|.+|-+.+....++..| =.|.||..|-+.+|..+-..+. +.||.. +|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~E---vyCPSG~kCp 68 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGE---VYCPSGEKCP 68 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSC---CCCTTSSCCB
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCc---EECCCCCccc
Confidence 45678999999998766666543 2699999999999998765544 778753 455
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.56 E-value=0.078 Score=44.19 Aligned_cols=33 Identities=27% Similarity=0.815 Sum_probs=25.2
Q ss_pred ccccccccccccCCCcee--cCCCCccchhhHHHHH
Q 008419 116 TVMCDICMEEVAGDKATK--MDCGHCFCNDCWTEHF 149 (566)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~~yl 149 (566)
...|+||.+.+.. +++. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCC-CceEECCcCChHHhHHHCHHHh
Confidence 4789999976322 3444 8999999999999843
No 82
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.72 E-value=0.46 Score=39.88 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=42.0
Q ss_pred CHHHHHHHH----------HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 43 TRESLLAAQ----------KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 43 t~~~l~~~~----------~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
|.|+|+-++ +++|..|+++.|++.+.|+..|...+||++..++.+++.
T Consensus 21 TaeQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 21 TAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp SHHHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 666665443 679999999999999999999999999999999999964
No 83
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.86 E-value=0.11 Score=39.45 Aligned_cols=37 Identities=32% Similarity=0.768 Sum_probs=29.5
Q ss_pred ccccCCCCCCCCceEEecCCcceeeEec---CCCeeeccccCCC
Q 008419 206 MVKWCPSTPHCGNAIRVEEVEVCEVECA---CGAQFCFSCLSEA 246 (566)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~---Cg~~fC~~C~~~~ 246 (566)
+.+.|| .|+..|...+ .-..++|. |+..||+.|+.+|
T Consensus 5 ~~k~CP---~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP---KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT---TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc---CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 5999888544 45568996 9999999999876
No 84
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.50 E-value=0.89 Score=35.42 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 50 AQKEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 50 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
.+...|..|.++| .+..+....+|.+|+-|+|.+++.+++.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4667899999999 7999999999999999999999999973
No 85
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.86 E-value=0.93 Score=34.98 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 50 AQKEDLRRVMELLS-LREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 50 ~~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
.+++.|..-+.+.| -++..|+.+|..++||.+.-+..|++.
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45667889999999 889999999999999999999999963
No 86
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.51 E-value=0.36 Score=36.42 Aligned_cols=32 Identities=31% Similarity=0.834 Sum_probs=22.9
Q ss_pred cCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceeec
Q 008419 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKN 289 (566)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn 289 (566)
+||+.||..|... | +..+...||.|+.++.++
T Consensus 25 ~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 25 VCGHTLCESCVDL------------L-------------FVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCCEEHHHHHH------------H-------------HHTTSSSCTTTCCCCSSC
T ss_pred CCCCHhHHHHHHH------------H-------------HHcCCCcCCCCCCccccc
Confidence 6999999999542 2 112236899999998753
No 87
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=85.82 E-value=1.3 Score=29.96 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHH
Q 008419 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVL 87 (566)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~ 87 (566)
.+.|.+++++ |.+.+.|+..|+..+||++.-++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888887 9999999999999999999877654
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=83.54 E-value=0.66 Score=38.61 Aligned_cols=47 Identities=32% Similarity=0.790 Sum_probs=31.7
Q ss_pred cCCCCCCCCceEEecCCcceeeEe-cCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCccee
Q 008419 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (566)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (566)
.|+ .|+..|..-+ .- ||++.||..|... |.....+.||.|+.+|.
T Consensus 3 fC~---~C~~Pi~iyg------RmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCD---KCGLPIKVYG------RMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCT---TTCSBCSEEE------EEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecC---ccCCCeEEEe------eeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 576 4876655322 23 6999999999431 22234489999999998
Q ss_pred ec
Q 008419 288 KN 289 (566)
Q Consensus 288 Kn 289 (566)
+.
T Consensus 49 rV 50 (101)
T 3vk6_A 49 RI 50 (101)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 89
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.18 E-value=2.1 Score=32.83 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|..-+.+.+.++..|+..|...+||.+.-++.|++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4578888999999999999999999999999999996
No 90
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.81 E-value=0.7 Score=44.88 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=37.7
Q ss_pred ccccccccccccCCCceec-CCCCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
...|.||.+.+.. -... .|+|.|...|+..|+... + ...||. |+..++..
T Consensus 180 i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~---~---~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN---A---EPRCPH--CNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC---S---SCBCTT--TCCBCCSC
T ss_pred CCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC---C---CCCCCC--CCCCCCCC
Confidence 5689999998763 2333 499999999999999752 2 268997 98876543
No 91
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=81.69 E-value=0.37 Score=40.02 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=25.6
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++| .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~ 53 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRW 53 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHH
Confidence 57999998886 56787 69999999999886
No 92
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=80.66 E-value=1.3 Score=31.36 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHcCCChHHHHHHHH
Q 008419 52 KEDLRRVMELLSLRE-HHARTLLIHYRWDVEKLLAVLV 88 (566)
Q Consensus 52 ~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~~~l~~~~~ 88 (566)
.+.|..-.++.|++. ..|+..|-.++||.+.-+..|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 456777888999995 9999999999999988665544
No 93
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=80.55 E-value=0.84 Score=31.32 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=25.6
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccc-cccCCC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H 315 (566)
..|+.++.+++ ++| .|+..+|+.|.. .-+++|
T Consensus 4 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 37 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCKDDGTLSCVICRDSLKHASH 37 (42)
T ss_dssp CCCCSSCSSCC-------CCCCSSSSSSCCTTSSCSSCTTC
T ss_pred ccchhhCCeee-------EEeCCCCeEEeccCCCCCCCCCC
Confidence 57999998887 999 599999999986 333444
No 94
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=80.51 E-value=0.3 Score=38.90 Aligned_cols=51 Identities=27% Similarity=0.728 Sum_probs=30.9
Q ss_pred ccCCCCCCCCceEEecCCcceeeEecCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCccee
Q 008419 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (566)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (566)
..|| -|-..+...+ .....|+||+.||..|...+ |. .....||.|+.++.
T Consensus 12 ~~Cp---ICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-----------~~--------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECP---LCMEPLEIDD--INFFPCTCGYQICRFCWHRI-----------RT--------------DENGLCPACRKPYP 61 (78)
T ss_dssp CBCT---TTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-----------TT--------------SSCSBCTTTCCBCS
T ss_pred CcCC---ccCccCcccc--ccccccCCCCCcCHHHHHHH-----------Hh--------------cCCCCCCCCCCccC
Confidence 3577 3755332222 12244789999999996421 11 01268999999886
Q ss_pred e
Q 008419 288 K 288 (566)
Q Consensus 288 K 288 (566)
+
T Consensus 62 ~ 62 (78)
T 1e4u_A 62 E 62 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 95
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.51 E-value=0.8 Score=34.21 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=26.8
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H~ 316 (566)
..|+.++.+++ ++| .|+..+|+.|.. ..+++|.
T Consensus 15 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp SBCTTTCCBCC-------EEETTTCSEECHHHHTSTTTTTCC
T ss_pred ccChhhCceee-------eecCCCCcEEecccCCCCcCCCCc
Confidence 57999998887 999 599999999986 4455553
No 96
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=80.35 E-value=0.82 Score=33.17 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=26.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccc-cccCCC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H 315 (566)
..||.++.+++ ++| .|+..+|+.|.. .-+++|
T Consensus 9 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 42 (53)
T 2did_A 9 SLCPQHHEALS-------LFCYEDQEAVCLICAISHTHRAH 42 (53)
T ss_dssp CBCTTTCCBCC-------EEESSSCSEECHHHHTSSTTTTS
T ss_pred CcChhhCCeee-------EEeCCCCeEEeccccCCCCCCCC
Confidence 68999998888 999 599999999986 444444
No 97
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.81 E-value=1.1 Score=35.96 Aligned_cols=33 Identities=36% Similarity=0.917 Sum_probs=21.7
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCc-----cccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~-----~FCw~C~~~~ 311 (566)
..||.|+.+|++++| +..| .|+. .||-.|+.+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 467888877777766 4557 4663 3677776663
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.72 E-value=0.72 Score=34.82 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=30.6
Q ss_pred cccCCCCCCCCceEEecCCcceeeEecCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcce
Q 008419 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPV 286 (566)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~I 286 (566)
...|| -|...+.. . +.-+||+.||..|... | +......||.|+.++
T Consensus 15 ~~~C~---IC~~~~~~---p---~~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCE---KCHLVLCS---P---KQTECGHRFCESCMAA------------L-------------LSSSSPKCTACQESI 60 (66)
T ss_dssp CEECT---TTCCEESS---C---CCCSSSCCCCHHHHHH------------H-------------HTTSSCCCTTTCCCC
T ss_pred CCCCC---CCChHhcC---e---eECCCCCHHHHHHHHH------------H-------------HHhCcCCCCCCCcCC
Confidence 34687 47655431 1 2236999999999543 2 212336899999988
Q ss_pred eec
Q 008419 287 EKN 289 (566)
Q Consensus 287 EKn 289 (566)
..+
T Consensus 61 ~~~ 63 (66)
T 2ecy_A 61 VKD 63 (66)
T ss_dssp CTT
T ss_pred Chh
Confidence 643
No 99
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=79.60 E-value=0.78 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=26.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccccccCCC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDH 315 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~~~H 315 (566)
..||.++.+++ ++| .|+..+|+.|....+++|
T Consensus 19 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~H~~H 51 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQTDQTCICYLCMFQEHKNH 51 (72)
T ss_dssp CBCTTTCCBCC-------EEESSSCCEECHHHHHTTTSSS
T ss_pred CcCcccCCceE-------EEeCCCCeEEccccCCCCCCCC
Confidence 68999998888 999 599999999986544444
No 100
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.33 E-value=1.9 Score=33.31 Aligned_cols=33 Identities=27% Similarity=0.862 Sum_probs=24.3
Q ss_pred cCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceeecCC
Q 008419 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (566)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~G 291 (566)
+|++.||..|... |.. .+ ..||-|+..+....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~~-------------~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WLK-------------AN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HHH-------------HC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HHH-------------cC-CcCcCcCCcCCCCCC
Confidence 6999999999543 321 12 589999999887665
No 101
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=78.25 E-value=0.87 Score=32.54 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=26.1
Q ss_pred cCCCCC-CcceeecCCCCeeEe-ccCccccccccccccCCC
Q 008419 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDH 315 (566)
Q Consensus 277 K~CPkC-~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~~~H 315 (566)
..|+.+ +.+++ ++| .|+..+|+.|...-+++|
T Consensus 7 ~~C~~H~~e~l~-------lfC~~~~~~iC~~C~~~~H~~H 40 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCESCDTLTCRDCQLNAHKDH 40 (50)
T ss_dssp CBCSSSTTCBCC-------EEETTTTEEECHHHHHTTTTTC
T ss_pred CcCcCCCCCCEE-------EEeCCCCEEEecccCCCcCCCC
Confidence 579999 88888 999 599999999987544444
No 102
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.05 E-value=0.57 Score=35.00 Aligned_cols=31 Identities=32% Similarity=0.738 Sum_probs=25.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++-.|||.||+.|...|-
T Consensus 21 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCS-----SCEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhC-----CeEEeCCCCcchHHHHHHHH
Confidence 58999988776 34555899999999998864
No 103
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=75.94 E-value=1 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.520 Sum_probs=25.5
Q ss_pred cCCCCCC-cceeecCCCCeeEe-ccCccccccccc-cccCCC
Q 008419 277 KPCPKCH-KPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (566)
Q Consensus 277 K~CPkC~-~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H 315 (566)
..|+.+. .+++ ++| .|+..+||.|.. .-+++|
T Consensus 7 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 41 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKAC 41 (48)
T ss_dssp CBCSSSTTSBCC-------EEETTTTEEECHHHHHHSTTTTS
T ss_pred CcCCCCCCcccc-------EEcCCCCeeEcccccCCCcCCCC
Confidence 5799998 8888 999 599999999973 334444
No 104
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.82 E-value=5.7 Score=28.38 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.+.|.+++++ |.+.+.|+.-|+...||+++-.+.++.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456666665 899999999999999999999988874
No 105
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=74.54 E-value=1.2 Score=39.19 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=25.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccccC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~~ 313 (566)
-.||-|...+. +-++-.|||.||..|...|-.
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHHH
Confidence 46999988775 345668999999999988743
No 106
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=74.37 E-value=1.5 Score=34.87 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=26.7
Q ss_pred cCCCCC-CcceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 008419 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (566)
Q Consensus 277 K~CPkC-~~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H~ 316 (566)
..||.+ +.+++ ++| .|+...|+.|.. ..+++|.
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 54 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLVGRHRDHQ 54 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHTSTTTTCC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCCCCCCCCC
Confidence 579999 68888 999 599999999987 5455554
No 107
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.20 E-value=1.9 Score=35.48 Aligned_cols=33 Identities=27% Similarity=0.827 Sum_probs=27.7
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCcc-----ccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQA-----FCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~-----FCw~C~~~~ 311 (566)
..||.|+.+++.++| +.+| .|+.. +|-.|.++.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 689999999999988 7789 59854 699998774
No 108
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=74.14 E-value=2.1 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=21.3
Q ss_pred CCcCCCCCCc-ceeecCCCCeeEe-ccCccc
Q 008419 275 HTKPCPKCHK-PVEKNGGCNLVSC-ICGQAF 303 (566)
Q Consensus 275 ~tK~CPkC~~-~IEKn~GCNhm~C-~C~~~F 303 (566)
+...||.|+. .+.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999988 7776666567888 487655
No 109
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.86 E-value=0.87 Score=34.92 Aligned_cols=32 Identities=31% Similarity=0.719 Sum_probs=25.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccccC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~~ 313 (566)
..||-|...+. +-++-.|||.||+.|...|-.
T Consensus 21 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 58999998776 345558999999999988753
No 110
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=73.73 E-value=1.4 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred cCCcCCCCCCcceeecCCCCeeEe-ccCccc
Q 008419 274 VHTKPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (566)
Q Consensus 274 ~~tK~CPkC~~~IEKn~GCNhm~C-~C~~~F 303 (566)
...+.||+|+..+--...-+.++| +|++.+
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 345899999974432223368899 698864
No 111
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=73.73 E-value=0.94 Score=35.13 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=24.7
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++-. |||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHH
Confidence 58999988876 446666 99999999998863
No 112
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=73.49 E-value=2.3 Score=30.46 Aligned_cols=29 Identities=24% Similarity=0.570 Sum_probs=20.8
Q ss_pred cCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCccee
Q 008419 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (566)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (566)
+||+.||..|.. +|. ..+ ..||.|+..|.
T Consensus 26 ~CgH~fc~~Ci~------------~~~-------------~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYE------------EML-------------KEG-YRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHH------------HHH-------------HHT-CCCTTSCCSSC
T ss_pred CCCCcccHHHHH------------HHH-------------HcC-CcCCCCCCcCC
Confidence 599999999864 232 222 68999998763
No 113
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=72.46 E-value=1.3 Score=34.46 Aligned_cols=32 Identities=25% Similarity=0.673 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccccC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~~ 313 (566)
-.||-|...+. +-++-.|||.||..|...|-.
T Consensus 13 ~~C~IC~~~~~-----~p~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLT-----EPLSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECS-----SCCCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccC-----CeeECCCCCHHHHHHHHHHHH
Confidence 57999987765 234457999999999988643
No 114
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.41 E-value=1.1 Score=34.35 Aligned_cols=31 Identities=29% Similarity=0.701 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
..||-|...+. +-++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCV-----HPVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCS-----SEEEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccC-----CCEEccCCCHHHHHHHHHHH
Confidence 57999988775 33555799999999998864
No 115
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=72.16 E-value=1.1 Score=37.55 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=25.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++. .|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp TBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHH
T ss_pred CCCccCChHHh-----CcCEeCCCCChhhHHHHHHHH
Confidence 58999998876 45777 799999999988863
No 116
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=71.57 E-value=1.1 Score=40.58 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=25.7
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++. .|||.||+.|...|-
T Consensus 55 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTKECLHRFCADCIITAL 86 (165)
T ss_dssp HBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHH
T ss_pred CCCcccChHhh-----CcCEeCCCCChhHHHHHHHHH
Confidence 48999998887 45777 799999999998863
No 117
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.17 E-value=3 Score=31.97 Aligned_cols=32 Identities=41% Similarity=0.911 Sum_probs=22.5
Q ss_pred eEecCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCccee
Q 008419 230 VECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (566)
Q Consensus 230 v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (566)
+..+|++.||..|... |. ..+ ..||-|+.+|.
T Consensus 32 ~~~~C~H~f~~~Ci~~------------~~-------------~~~-~~CP~Cr~~~~ 63 (74)
T 2ep4_A 32 GICPCKHAFHRKCLIK------------WL-------------EVR-KVCPLCNMPVL 63 (74)
T ss_dssp EEETTTEEEEHHHHHH------------HH-------------HHC-SBCTTTCCBCS
T ss_pred EEcCCCCEecHHHHHH------------HH-------------HcC-CcCCCcCcccc
Confidence 3447999999999542 32 212 58999998875
No 118
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=71.11 E-value=1.7 Score=32.62 Aligned_cols=33 Identities=15% Similarity=0.504 Sum_probs=26.6
Q ss_pred cCCCCC-CcceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 008419 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (566)
Q Consensus 277 K~CPkC-~~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H~ 316 (566)
..||.+ +.+++ ++| .|+...|+.|.. .-+++|.
T Consensus 9 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 44 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKACE 44 (64)
T ss_dssp CCCSSCTTCCCC-------SEESSSCCCCCSHHHHSSSTTSSC
T ss_pred CcCcCcCCCccc-------eEcCcCCceeCccccCCCcCCCCC
Confidence 579999 88888 999 599999999975 3455553
No 119
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=70.97 E-value=7.2 Score=26.84 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|.++++ +|.+.+.|+..|+..+||++.-.+-+++
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45677776 5999999999999999999998887763
No 120
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.06 E-value=2.6 Score=30.73 Aligned_cols=27 Identities=30% Similarity=0.784 Sum_probs=21.4
Q ss_pred cCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceee
Q 008419 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (566)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (566)
+||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 59999999997641 2689999988763
No 121
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=69.91 E-value=1.3 Score=34.80 Aligned_cols=30 Identities=30% Similarity=0.699 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-+.-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 20 VTCPICLELLK-----EPVSADCNHSFCRACITLN 49 (85)
T ss_dssp TSCTTTCSCCS-----SCEECTTSCCBCHHHHHHH
T ss_pred CCCcCCChhhC-----cceeCCCCCHHHHHHHHHH
Confidence 58999988775 3355579999999998875
No 122
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.49 E-value=1.3 Score=34.05 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=20.7
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~ 311 (566)
-.||-|...+.. -++- .|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 46 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRH 46 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHH
Confidence 589999887763 3444 57777777776664
No 123
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=69.04 E-value=0.85 Score=36.83 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++-. |||.||..|...|
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 44 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 44 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHH
Confidence 57999988776 446666 9999999999875
No 124
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.98 E-value=2.2 Score=32.49 Aligned_cols=28 Identities=36% Similarity=0.850 Sum_probs=22.6
Q ss_pred CCcCCCCCCcceeecCCCCeeEeccCcccccc
Q 008419 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (566)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNhm~C~C~~~FCw~ 306 (566)
...+|..|++.+... | +.|+||..||-.
T Consensus 14 ~~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT-G---FMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT-C---EECSSSCEECTT
T ss_pred cCCcChhhCCccCcc-C---EEeecCCEeccc
Confidence 347899999987754 2 889999999975
No 125
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=68.74 E-value=2.8 Score=32.42 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=23.7
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCcccccc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWL 306 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~ 306 (566)
.-.||.|+.+++-+.+...+.| .||..|=-.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 3589999999998888888888 477655333
No 126
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=68.15 E-value=1.8 Score=33.70 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++-.|||.||..|...|-
T Consensus 9 ~~C~IC~~~~~-----~Pv~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp SSCTTTSCCCS-----SEEEETTTEEEEHHHHHHHH
T ss_pred CCCCCcccccc-----CCEEcCCCCeecHHHHHHHH
Confidence 57999998876 34555799999999988764
No 127
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.97 E-value=1.9 Score=31.21 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=18.7
Q ss_pred cCCcCCCCCCccee-ecCCCCeeEe-ccCcc
Q 008419 274 VHTKPCPKCHKPVE-KNGGCNLVSC-ICGQA 302 (566)
Q Consensus 274 ~~tK~CPkC~~~IE-Kn~GCNhm~C-~C~~~ 302 (566)
...+.||+|+..+. .+.+ +.+.| +||+.
T Consensus 17 ~~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t 46 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHG-DRWACGKCGYT 46 (50)
T ss_dssp CSSEECSSSCSSCEEEECS-SEEECSSSCCE
T ss_pred EecccCCCCCCceEEecCC-CeEECCCCCCE
Confidence 34589999987433 3333 67888 68864
No 128
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.69 E-value=1.4 Score=36.09 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=24.9
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++. .|||.||..|...|-
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFN-----IAMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhC-----CcCEECCCCCHhhHHHHHHHH
Confidence 58999998876 35666 699999999988864
No 129
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.41 E-value=1.5 Score=34.54 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=22.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 16 FRCFICRQAFQ-----NPVVTKCRHYFCESCALEH 45 (81)
T ss_dssp SBCSSSCSBCC-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCcCCCchhc-----CeeEccCCCHhHHHHHHHH
Confidence 57999988875 2344468888888888775
No 130
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.88 E-value=1.2 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=26.0
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccc-cccCCC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~-~~~~~H 315 (566)
..|+.++.+++ ++| .|+..+|+.|.. .-+++|
T Consensus 19 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~~~eH~~H 52 (57)
T 2egm_A 19 GICPKHQEALK-------LFCEVDEEAICVVCRESRSHKQH 52 (57)
T ss_dssp SBCTTTCCBCC-------EEETTTTEEECHHHHHSHHHHSS
T ss_pred CcChhhCceee-------EEcCCCCcEEecccCCCCCCCCC
Confidence 57999998888 999 599999999986 434444
No 131
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=66.60 E-value=23 Score=26.31 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.|++.|..++...|++..-+...|...+||.++-+..|.+
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5778899999999999999999999999999999888874
No 132
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.04 E-value=1.1 Score=32.53 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+.. -+.-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSS-----CCCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCc-----cEeCCCCCccCHHHHHHH
Confidence 579999887763 244479999999999986
No 133
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=65.77 E-value=8.3 Score=30.13 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|.++++ +|.+.+.|+..|+...||+++.++.++.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556665 4899999999999999999999999884
No 134
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=65.54 E-value=1.8 Score=37.11 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=22.8
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++-.|||.||..|...|
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 82 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRS 82 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHH
Confidence 47999988776 3355578888888888775
No 135
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=65.39 E-value=2.4 Score=34.13 Aligned_cols=36 Identities=25% Similarity=0.665 Sum_probs=28.7
Q ss_pred CCcCCCCCCcceeecCCCCeeEe-ccCccccccccccccC
Q 008419 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGR 313 (566)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~~ 313 (566)
....||.|+....+..+-..+.| .|++.|- ++.|.+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSSS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEecc
Confidence 34689999999999888889999 4999874 566543
No 136
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=65.36 E-value=1.9 Score=33.54 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=21.6
Q ss_pred cCCCe-eeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceee
Q 008419 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (566)
Q Consensus 233 ~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (566)
+||+. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 79999 999996532 689999999874
No 137
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=64.89 E-value=2.9 Score=31.79 Aligned_cols=27 Identities=33% Similarity=0.725 Sum_probs=21.8
Q ss_pred CcCCCCCCcceeecCCCCeeEeccCcccccc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C~C~~~FCw~ 306 (566)
..+|..|++.+... -+.|+||..||-.
T Consensus 15 ~~rC~~C~kkvgl~----~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCKCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECTTSCEECSS
T ss_pred CCcChhhCCccccc----CeEeecCCEeccc
Confidence 47899999887644 2889999999975
No 138
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.59 E-value=3.6 Score=31.40 Aligned_cols=33 Identities=27% Similarity=0.665 Sum_probs=25.9
Q ss_pred cccccccccccccCCCceecCC-CCccchhhHHHHHH
Q 008419 115 STVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFI 150 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~ 150 (566)
+..-|.||.++- .+.-+.| |-.||..||++.=.
T Consensus 7 e~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 7 GLPWCCICNEDA---TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTT
T ss_pred CCCeeEEeCCCC---eEEecCCCCceehHHHHHHHcc
Confidence 456899999983 2455689 78999999999753
No 139
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.56 E-value=1.6 Score=34.15 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=22.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+.. -++-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHH
Confidence 589999888752 233468888888888775
No 140
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.52 E-value=2.9 Score=32.70 Aligned_cols=26 Identities=42% Similarity=0.952 Sum_probs=22.2
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~ 306 (566)
.+|..|++.+...+ +.|+||..||-.
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSS
T ss_pred CcChhhCCcccccC----eecCCCCEechh
Confidence 68999999888653 899999999975
No 141
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=64.48 E-value=1.8 Score=38.37 Aligned_cols=30 Identities=20% Similarity=0.660 Sum_probs=24.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++..||+.||..|...|
T Consensus 32 ~~C~IC~~~~~-----~pv~~~CgH~FC~~Ci~~~ 61 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQAQCGHRYCSFCLASI 61 (141)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred cCCCCCChhhc-----CcEECCCCCccCHHHHHHH
Confidence 47999998876 4466789999999999886
No 142
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=63.03 E-value=2.1 Score=32.19 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=19.4
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCccccccccccc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~ 311 (566)
...||-|...+.. -..- .|||.||+.|...|
T Consensus 5 ~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~ 36 (68)
T 1chc_A 5 AERCPICLEDPSN-----YSMALPCLHAFCYVCITRW 36 (68)
T ss_dssp CCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHH
T ss_pred CCCCeeCCccccC-----CcEecCCCCeeHHHHHHHH
Confidence 3689999887752 1222 46666666666654
No 143
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=62.97 E-value=1.6 Score=33.06 Aligned_cols=37 Identities=32% Similarity=0.610 Sum_probs=25.1
Q ss_pred CcCCCCCCcceeec--CCCCeeEeccCcccccccccccc
Q 008419 276 TKPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 276 tK~CPkC~~~IEKn--~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
...||-|...+... +|-.-+.-.|||.||+.|...|-
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 36799998887643 23222333699999999988863
No 144
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=62.40 E-value=3.8 Score=34.45 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++=.|||.||..|...|-
T Consensus 16 ~~C~iC~~~~~-----~p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILV-----EPVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCS-----SCEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccC-----ceeEcCCCCHHhHHHHHHHH
Confidence 47999987765 23343799999999998864
No 145
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.22 E-value=2.1 Score=33.89 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+..... .-+.-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHHH
T ss_pred CCCccCCccccccCC-CeEECCCCChhhHHHHHHHH
Confidence 579999887764321 12334689999999988763
No 146
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=61.80 E-value=21 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 49 AAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 49 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
..|++.|..++...|++..-+...|...+||-++-+..|.+
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35778899999999999999999999999999999988875
No 147
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.71 E-value=1.7 Score=36.22 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=23.2
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
-.||-|...+. +-++-.|||.||+.|...|-
T Consensus 22 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 22 LECPICLELIK-----EPVSTKCDHIFCKFCMLKLL 52 (112)
T ss_dssp TSCSSSCCCCS-----SCCBCTTSCCCCSHHHHHHH
T ss_pred CCCcccChhhc-----CeEECCCCCHHHHHHHHHHH
Confidence 58999988775 22334689999999988763
No 148
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.58 E-value=3.1 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=23.3
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++- .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~-----~pv~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCCSSSCCBCTTTGGGG
T ss_pred CCCCCCChHhh-----CccEeCCCCCHHHHHHHHHH
Confidence 58999988775 33444 78999999998875
No 149
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.57 E-value=11 Score=28.43 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.|.++++ +|.+...|+..|+...||++...+-++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4556666 5999999999999999999999998885
No 150
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=61.47 E-value=2.2 Score=36.27 Aligned_cols=30 Identities=30% Similarity=0.682 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++..||+.||+.|...|
T Consensus 19 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 48 (118)
T 3hct_A 19 YECPICLMALR-----EAVQTPCGHRFCKACIIKS 48 (118)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCCcCChhhc-----CeEECCcCChhhHHHHHHH
Confidence 58999998876 3356679999999998875
No 151
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.14 E-value=13 Score=28.02 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
+.|.++++ +|.+...|+.-|+...||+++-.+-++..
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34556665 59999999999999999999999888853
No 152
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=61.05 E-value=3 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.1
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCccccccccccccC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 313 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~~FCw~C~~~~~~ 313 (566)
..||-|...+..... .+.-. ||+.||..|+..|-.
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 579999888764332 34554 999999999998753
No 153
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.92 E-value=3.6 Score=32.19 Aligned_cols=28 Identities=36% Similarity=0.874 Sum_probs=22.6
Q ss_pred CCcCCCCCCcceeecCCCCeeEeccCcccccc
Q 008419 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (566)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNhm~C~C~~~FCw~ 306 (566)
...+|..|++.+... | +.|+|+..||-.
T Consensus 24 ~~~RC~~C~kkvgL~-~---f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT-G---FKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT-C---EECTTSCEECTT
T ss_pred cCccchhhcCccccc-c---eEeccCCEeccc
Confidence 457899999887755 2 899999999974
No 154
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.76 E-value=17 Score=29.15 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.|.+++++ |.+...|+..|+...||+++-.+.++.
T Consensus 32 ~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 32 SINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555554 999999999999999999999998885
No 155
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=60.53 E-value=8.1 Score=30.83 Aligned_cols=25 Identities=36% Similarity=0.910 Sum_probs=20.0
Q ss_pred CCCCCCcceeecCCCCeeEec-cC--cccccccccc
Q 008419 278 PCPKCHKPVEKNGGCNLVSCI-CG--QAFCWLCGGA 310 (566)
Q Consensus 278 ~CPkC~~~IEKn~GCNhm~C~-C~--~~FCw~C~~~ 310 (566)
.||.|+.++|+ |+ || ..||-.|++-
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCE
Confidence 89999999995 73 77 4688888765
No 156
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.02 E-value=4.5 Score=33.83 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=23.5
Q ss_pred cCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceeecC
Q 008419 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNG 290 (566)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~ 290 (566)
+|++.||..|... |...... .....||-|+..+.+..
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCC
Confidence 5999999999653 3211000 12368999998886543
No 157
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.96 E-value=4.1 Score=32.83 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCcCCCCCCcceeecCCCCeeEeccCcccccc
Q 008419 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (566)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNhm~C~C~~~FCw~ 306 (566)
...+|..|++.+-... -+.|+||..||-.
T Consensus 24 ~~~rC~~C~kkvgl~~---~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLAT---SFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSS---CEECTTCCEECTT
T ss_pred cCccchhhCCeecccC---CeEcCCCCEeccc
Confidence 3478999998766432 3899999999974
No 158
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=59.96 E-value=2.9 Score=34.24 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=34.9
Q ss_pred cccccccccccccCCCceecCC-CCccchhhHHHHHHhhhccCCcceeecCcccccccchhH
Q 008419 115 STVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (566)
..+.|-.|+-... . .+.| .|+.|..|+...+.. + =+||. |+..++..
T Consensus 27 G~~nCKsCWf~~k--~--LV~C~dHYLCl~CLtlmL~~----S----drCpI--C~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--G--LVECNNHYLCLNCLTLLLSV----S----NRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--S--EEECSSCEEEHHHHHHTCSS----S----SEETT--TTEECCCC
T ss_pred CcccChhhccccC--C--eeeecchhhHHHHHHHHHhh----c----cCCcc--cCCcCCcc
Confidence 5688999986533 2 3355 599999999998775 2 38999 98877654
No 159
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.59 E-value=2.5 Score=35.69 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++-.|||.||+.|...|
T Consensus 24 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 53 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVETSCKHLFCRICILRC 53 (116)
T ss_dssp TBCTTTCSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCCCCCcHhc-----CcEEcCCCCcccHHHHHHH
Confidence 57999998876 3455579999999998875
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=59.19 E-value=7.5 Score=37.64 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=11.7
Q ss_pred eEecCCCeeeccccC
Q 008419 230 VECACGAQFCFSCLS 244 (566)
Q Consensus 230 v~C~Cg~~fC~~C~~ 244 (566)
|+-+||+.||..|..
T Consensus 222 v~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 222 CITPSGITYDRKDIE 236 (281)
T ss_dssp EECSSCCEEETTHHH
T ss_pred eECCCCCEECHHHHH
Confidence 444699999999854
No 161
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=58.84 E-value=2.3 Score=31.34 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=23.7
Q ss_pred cCCCCCCcceeec--CCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn--~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
..||-|...+... .+-.-+.-.|||.||..|...|-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 4688888877643 22111333689999999988763
No 162
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=57.72 E-value=21 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.+.|.+++++ |. +.+.++..|+...||+++-++.++.
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456666664 77 8899999999999999999998885
No 163
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=57.46 E-value=11 Score=39.09 Aligned_cols=34 Identities=29% Similarity=0.750 Sum_probs=23.9
Q ss_pred eEecCCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceee
Q 008419 230 VECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (566)
Q Consensus 230 v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (566)
+.-+||+.||..|.. .|. ......||-|+.+|..
T Consensus 346 v~lpCGH~FC~~Ci~------------~wl-------------~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 346 KIEPCGHLMCTSCLT------------SWQ-------------ESEGQGCPFCRCEIKG 379 (389)
T ss_dssp EEETTCCEECHHHHH------------HHH-------------HHTCSBCTTTCCBCCE
T ss_pred EEeCCCChhhHHHHH------------HHH-------------hcCCCCCCCCCCccCC
Confidence 334799999999854 232 1133789999998874
No 164
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.40 E-value=2.9 Score=31.60 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccccC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~~ 313 (566)
..||-|...+.. +.=.|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHHH
Confidence 689999887652 4447999999999888643
No 165
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.40 E-value=2.7 Score=31.44 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=24.2
Q ss_pred cCCCCCCcceeecC--CCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNG--GCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~--GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
..||-|...+.... +-.-+.-.|||.||..|...|-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence 67999988776432 2111333688899999988863
No 166
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=55.20 E-value=3.4 Score=36.87 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=21.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|...+. +-++-.||+.||+.|...|
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~ 108 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRS 108 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHH
Confidence 57999988776 3444468888888887765
No 167
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.70 E-value=5 Score=31.01 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
..||-|...+.... ..+.-.|+|.||+.|+..|-
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHH
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHH
Confidence 68999987765322 11222477777777777653
No 168
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=54.28 E-value=4 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=23.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCcccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~ 312 (566)
..||-|...+.... ..+.-.|||.||+.|+..|-
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHH
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHH
Confidence 68999988775322 22333688888988888763
No 169
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.13 E-value=28 Score=27.02 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 55 LRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 55 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
|.++++ +|.+...|+.-|+..+||+++-.+-++..
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 444444 49999999999999999999999988853
No 170
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=52.43 E-value=16 Score=35.98 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 47 LLAAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 47 l~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
+...+++.|++-+.+.|.++..|+..|..++||.+.-++.|++.
T Consensus 11 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 11 DASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp --CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34457778999999999999999999999999999999999963
No 171
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=50.85 E-value=4.1 Score=36.81 Aligned_cols=30 Identities=30% Similarity=0.682 Sum_probs=25.2
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|..++. +-+++.||+.||..|...|
T Consensus 19 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 19 YECPICLMALR-----EAVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCCCCChhhc-----CcEECCCCCHHHHHHHHHH
Confidence 47999998887 4477789999999999885
No 172
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.21 E-value=2.6 Score=32.38 Aligned_cols=29 Identities=34% Similarity=0.741 Sum_probs=21.6
Q ss_pred CCcCCCCCCcceeecC--CCCeeEeccCcccccc
Q 008419 275 HTKPCPKCHKPVEKNG--GCNLVSCICGQAFCWL 306 (566)
Q Consensus 275 ~tK~CPkC~~~IEKn~--GCNhm~C~C~~~FCw~ 306 (566)
...+|..|++.+...+ | +.|+||..||-.
T Consensus 14 ~~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQEL---GSCRCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHH---HCCSSSCCCCTT
T ss_pred cCCcchhhCCeecccccCc---eEecCCCEehhc
Confidence 3478999998877332 2 579999999974
No 173
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=48.59 E-value=10 Score=29.14 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=19.4
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~F 303 (566)
-.||.|+.+++-+.+=..+.| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 479999999887655456777 366555
No 174
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=48.25 E-value=11 Score=29.19 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=21.4
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCccccc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCW 305 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C-~C~~~FCw 305 (566)
.-.||.|+.+++-+.+=..+.| .||..|=-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 3589999999987655456888 47765533
No 175
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=47.28 E-value=5.3 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=19.9
Q ss_pred cccccCCCCCCCCceEEecCC---cceeeEec-CCCe
Q 008419 205 KMVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQ 237 (566)
Q Consensus 205 ~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-Cg~~ 237 (566)
..+++|| .|++.+.++.+ ......|. |++.
T Consensus 22 ~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 22 TTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred cCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 4678998 59999987653 23345664 6654
No 176
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.83 E-value=35 Score=27.20 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
.|.++++ +|.+...|+..|+..+||++.-.+-+++.
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4556666 59999999999999999999999988863
No 177
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=46.30 E-value=34 Score=24.56 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|.+++++ |. +.+.++..|+...||+++-++.++.
T Consensus 14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 355666654 78 8889999999999999999888773
No 178
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.12 E-value=13 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=19.4
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~F 303 (566)
-.||.|+.+++-..+=+.+.| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 589999999886554456777 376555
No 179
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.56 E-value=24 Score=28.49 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=34.7
Q ss_pred cccccccccccccC---CCceec--CCCCccchhhHHHHHHhhhccCCcceeecCcccccccc
Q 008419 115 STVMCDICMEEVAG---DKATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (566)
Q Consensus 115 ~~~~C~IC~e~~~~---~~~~~l--~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 172 (566)
....|.||-+++.. .+++.. .|+-..|+.|+.-- .++|. -.||. |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----rkeG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----RREGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----HHTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----HhccC---ccccc--cCCcc
Confidence 45789999999643 234433 78999999997654 34565 68998 87654
No 180
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.33 E-value=37 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008419 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (566)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (566)
.+.|.++++ +|++...|+..|+..+||++.-.+-+++.
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 456677777 59999999999999999999999999864
No 181
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=45.04 E-value=3.6 Score=33.20 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccccC
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~~~ 313 (566)
..||-|...+.... ..+.-.|||.||+.|...|-.
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHH
Confidence 56999987765332 123336999999999998754
No 182
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.16 E-value=8 Score=30.37 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=17.4
Q ss_pred CCCCeeEeccCccccccccccccCC
Q 008419 290 GGCNLVSCICGQAFCWLCGGATGRD 314 (566)
Q Consensus 290 ~GCNhm~C~C~~~FCw~C~~~~~~~ 314 (566)
+.+..+.-.|+|.|+..|+..|-..
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~~ 63 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVKQ 63 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTTT
T ss_pred CceEEEeCCCCCccChHHHHHHHHh
Confidence 3444444469999999999887543
No 183
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.56 E-value=38 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCHHH-HHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSLREHH-ARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~-a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|.++.++ |.+..+ ++..|+...||+++.++.++.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345566655 786554 599999999999999999985
No 184
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=42.98 E-value=40 Score=25.03 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=33.5
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+++|..+++++ ++.....+..|..+++|+|..++.+.+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35667788888 899999999999999999999999885
No 185
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.19 E-value=43 Score=25.19 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-ChHHHHHHHHh
Q 008419 54 DLRRVMELLSLREHHARTLLIHYRW-DVEKLLAVLVE 89 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~~~l~~~~~~ 89 (566)
.|.++++ +|.+...|+..|+...| |++.-.+-+++
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4556666 59999999999999999 99999988885
No 186
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.77 E-value=17 Score=29.42 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=36.2
Q ss_pred CCCceEEecCCcceeeEec-CCCeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceeecCCC
Q 008419 215 HCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGC 292 (566)
Q Consensus 215 ~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~GC 292 (566)
-|+--|....+....|-|. |+...|..|.. +. ++...+.||+|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----------YE---------------rkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCYE----------YE---------------RREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----------HH---------------HHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHHH----------HH---------------HhccCccccccCCccccccCC
Confidence 4776666555555668896 99998887732 11 123458999999998765554
No 187
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.12 E-value=22 Score=28.66 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=26.7
Q ss_pred CCccccccccccccccCCC--ceecCCCCccchhhHHHHH
Q 008419 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (566)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (566)
+......|.+|...|.... -.--.||+.||..|....+
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3345578999998876321 1223899999999987654
No 188
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=40.96 E-value=17 Score=30.79 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=21.6
Q ss_pred CcCCCCCCcceee-c---CCCCeeEec-cCccc
Q 008419 276 TKPCPKCHKPVEK-N---GGCNLVSCI-CGQAF 303 (566)
Q Consensus 276 tK~CPkC~~~IEK-n---~GCNhm~C~-C~~~F 303 (566)
.+.||.|+.++.- . .|.+.+.|+ |++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4789999887643 2 368899994 99876
No 189
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=40.66 E-value=11 Score=32.88 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=22.2
Q ss_pred cCCcCCCCCCccee-ec---CCCCeeEec-cCccc
Q 008419 274 VHTKPCPKCHKPVE-KN---GGCNLVSCI-CGQAF 303 (566)
Q Consensus 274 ~~tK~CPkC~~~IE-Kn---~GCNhm~C~-C~~~F 303 (566)
...+.||.|+.++- +. .|.+.+.|+ |++.+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 34589999987763 32 368899995 99865
No 190
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=40.57 E-value=16 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=21.0
Q ss_pred CcCCCCCCcceeecCCCCeeEec-cCccccc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCW 305 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C~-C~~~FCw 305 (566)
.-.||.|+.+++-+..=+.+.|. ||..|=-
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccC
Confidence 35899999998866544567884 7765533
No 191
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.35 E-value=54 Score=33.47 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008419 431 IKQHLFEDQQQQLEANVEKLSKFLEEPFD 459 (566)
Q Consensus 431 ~~~~lfe~~Q~~le~~~E~L~~~le~~~~ 459 (566)
...+.|...-.+||.+++.|.+.+...|.
T Consensus 106 dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456666666666666666666665444
No 192
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.28 E-value=52 Score=25.52 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-CChHHHHHHHHhc
Q 008419 54 DLRRVMELLSLREHHARTLLIHYR-WDVEKLLAVLVEN 90 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~~~~~~~ 90 (566)
.|.++++ +|.+...|+..|+... ||++.-.+-+++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 12 VIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 4555666 5999999999999988 6899999998864
No 193
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=39.65 E-value=39 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhcCh
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVENGK 92 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~~ 92 (566)
++|..+.+..|++..+++.-|...+||+++-++.+-+++.
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~ 50 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQ 50 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 4567888889999999999999999999999998876543
No 194
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=37.68 E-value=6.9 Score=33.49 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=0.0
Q ss_pred cCCCCeeEeccCccccccccccccCC
Q 008419 289 NGGCNLVSCICGQAFCWLCGGATGRD 314 (566)
Q Consensus 289 n~GCNhm~C~C~~~FCw~C~~~~~~~ 314 (566)
.+.|.-+.-.|+|.|+..|...|-..
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp --------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHHc
Confidence 34455566679999999999997543
No 195
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=37.56 E-value=24 Score=35.89 Aligned_cols=28 Identities=25% Similarity=0.722 Sum_probs=22.5
Q ss_pred EecCCCe-eeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceee
Q 008419 231 ECACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (566)
Q Consensus 231 ~C~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (566)
.=+||+. ||..|...+ +.||-|+.+|.+
T Consensus 310 ~lpCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 310 FIPCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp EETTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred EcCCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 3379999 999996532 589999999874
No 196
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=37.33 E-value=26 Score=27.99 Aligned_cols=47 Identities=23% Similarity=0.387 Sum_probs=27.8
Q ss_pred CeeeccccCCCCCCCCchhhHHHHHhhhhhHHHHHHHHcCCcCCCCCCcceeecCCCCee--Eec--cCcccccccccc
Q 008419 236 AQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLV--SCI--CGQAFCWLCGGA 310 (566)
Q Consensus 236 ~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~GCNhm--~C~--C~~~FCw~C~~~ 310 (566)
..+|+.|+..-|..-.|... .+|.+|+.. .|| .|. =...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~-------gh~~~~c~~p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDD-------NEKAKPKVLPFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC--------------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccC-------CcccccccCCCCCCeecccCCC
Confidence 35799999999998777541 257777654 223 132 245799999987
No 197
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=36.46 E-value=17 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.825 Sum_probs=20.3
Q ss_pred cCCcCCCCCCcceeecCCCCeeEec-cCccc
Q 008419 274 VHTKPCPKCHKPVEKNGGCNLVSCI-CGQAF 303 (566)
Q Consensus 274 ~~tK~CPkC~~~IEKn~GCNhm~C~-C~~~F 303 (566)
...-.||+|+...-=..| +.+.|. |+++|
T Consensus 25 ~~lP~CP~C~seytYeDg-~l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDG-ALLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECS-SSEEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecC-CeEECCcccccc
Confidence 345799999987665555 347774 87776
No 198
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=35.77 E-value=47 Score=30.42 Aligned_cols=30 Identities=7% Similarity=-0.148 Sum_probs=18.8
Q ss_pred ccccCCCCCCCCceEEecCCcceeeEecCCCeeeccccC
Q 008419 206 MVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (566)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~ 244 (566)
....|| -|...+. + + |.-+||+.||..|-.
T Consensus 105 ~~f~CP---I~~elm~---D--P-V~~~~Ghtfer~~I~ 134 (179)
T 2f42_A 105 DYLCGK---ISFELMR---E--P-CITPSGITYDRKDIE 134 (179)
T ss_dssp GGGBCT---TTCSBCS---S--E-EECTTSCEEEHHHHH
T ss_pred Hhhccc---CccccCC---C--C-eECCCCCEECHHHHH
Confidence 444787 3755443 1 1 334799999999844
No 199
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=34.86 E-value=18 Score=31.05 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=21.4
Q ss_pred CcCCCCCCcceee----cCCCCeeEec-cCccc
Q 008419 276 TKPCPKCHKPVEK----NGGCNLVSCI-CGQAF 303 (566)
Q Consensus 276 tK~CPkC~~~IEK----n~GCNhm~C~-C~~~F 303 (566)
.+.||.|+.++.- ..+-+.+.|+ |++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999976652 2667899994 99865
No 200
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=34.85 E-value=18 Score=33.14 Aligned_cols=24 Identities=25% Similarity=0.930 Sum_probs=20.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCcc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQA 302 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~ 302 (566)
-.||+|+.++.+.+ ++|.| .||.-
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 58999999998866 99999 59863
No 201
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.18 E-value=11 Score=28.12 Aligned_cols=34 Identities=26% Similarity=0.719 Sum_probs=23.2
Q ss_pred cCCCCCCCCceEEecCCcceeeEec-CCCeeeccccCCCCCC
Q 008419 209 WCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSP 249 (566)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p 249 (566)
.|- +|...+. +. ....|+ |+..||..|-.-.|.-
T Consensus 17 ~C~---~C~~~~~--~~--~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCY---GCQGELK--DQ--HVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EET---TTTEECT--TS--EEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccc---ccCcccC--CC--ccEECCccCcCcccchhHHHHhh
Confidence 475 4876653 11 126797 9999999997766753
No 202
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=34.07 E-value=14 Score=26.17 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.|.++.+ +|.+...|...|....||.+.-.+-+++
T Consensus 7 aI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4555554 4999999999999999999998887774
No 203
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.56 E-value=25 Score=30.28 Aligned_cols=39 Identities=26% Similarity=0.660 Sum_probs=26.8
Q ss_pred HHHHc-CCcCCCCCCcceeecCCCCeeEec-cCcccccccccc
Q 008419 270 NWITV-HTKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (566)
Q Consensus 270 ~~i~~-~tK~CPkC~~~IEKn~GCNhm~C~-C~~~FCw~C~~~ 310 (566)
.|+.. ....|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 35532 35689999987541 12335895 999999999865
No 204
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.69 E-value=16 Score=35.75 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=25.3
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~ 311 (566)
-.||-|..++. +-++- .|||.||-.|...|
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~ 212 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNY 212 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHH
Confidence 58999999887 66888 69999999998775
No 205
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.60 E-value=28 Score=25.54 Aligned_cols=25 Identities=40% Similarity=1.071 Sum_probs=17.7
Q ss_pred cCCCCCCcceeecCCCCeeEec---cCccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI---CGQAF 303 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~---C~~~F 303 (566)
-.||.|+.+++-.. ..+.|. ||..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988766 556664 55443
No 206
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.94 E-value=17 Score=34.40 Aligned_cols=32 Identities=28% Similarity=0.699 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCcccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~~FCw~C~~~ 310 (566)
..|+.|+...-- .--.-.|| ||.-||..|...
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCC
Confidence 689999887531 12346796 999999999764
No 207
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.83 E-value=80 Score=25.09 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-CChHHHHHHHHhc
Q 008419 54 DLRRVMELLSLREHHARTLLIHYR-WDVEKLLAVLVEN 90 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~~~~~~~ 90 (566)
.|.++++ +|.+...|+..|++.. ||++.-.+-+++.
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3445555 5999999999888874 9999999888864
No 208
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.73 E-value=66 Score=24.10 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 008419 55 LRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (566)
Q Consensus 55 i~~v~~~l~i~~~~a~~LL~~~-~W~~~~l~~~~~~~ 90 (566)
|.++++ +|.+...|+..|+.. +||++...+-+++.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 13 LESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 445554 699999999999998 79999999988864
No 209
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=31.72 E-value=14 Score=30.83 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=17.5
Q ss_pred CCCCeeEeccCccccccccccccCC
Q 008419 290 GGCNLVSCICGQAFCWLCGGATGRD 314 (566)
Q Consensus 290 ~GCNhm~C~C~~~FCw~C~~~~~~~ 314 (566)
++|.-+.-.|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred ccceEeecccCcEECHHHHHHHHHc
Confidence 4455555578999999998887543
No 210
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=31.59 E-value=32 Score=30.85 Aligned_cols=19 Identities=42% Similarity=1.127 Sum_probs=15.3
Q ss_pred cCCCCCCcceeecCCCCeeEec--cCc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI--CGQ 301 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~--C~~ 301 (566)
|.||+|.-+++ ++-|+ ||+
T Consensus 111 k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 111 KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp SBCSSSCCBEE------EECCCTBTTB
T ss_pred CCCCCCCccee------eEeccCcCCC
Confidence 89999998887 67784 764
No 211
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=31.44 E-value=22 Score=34.84 Aligned_cols=25 Identities=40% Similarity=0.955 Sum_probs=19.3
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccCc
Q 008419 277 KPCPKCHKPVEK--NGGCNLVSC-ICGQ 301 (566)
Q Consensus 277 K~CPkC~~~IEK--n~GCNhm~C-~C~~ 301 (566)
++||.|+.+|++ -+|=+-.+| .|+.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 799999999987 466666777 4764
No 212
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=30.79 E-value=19 Score=35.27 Aligned_cols=25 Identities=28% Similarity=0.763 Sum_probs=19.6
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccCc
Q 008419 277 KPCPKCHKPVEK--NGGCNLVSC-ICGQ 301 (566)
Q Consensus 277 K~CPkC~~~IEK--n~GCNhm~C-~C~~ 301 (566)
++||.|+.+|++ -+|=.-.+| +|+.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 789999999986 467666777 4764
No 213
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.76 E-value=18 Score=31.03 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=22.8
Q ss_pred CCccccccccccccccCCC--ceecCCCCccchhhHHHHH
Q 008419 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (566)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (566)
|......|..|-..|.... -.--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 4445578999988876321 1223899999999976554
No 214
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.43 E-value=29 Score=33.24 Aligned_cols=36 Identities=25% Similarity=0.663 Sum_probs=21.7
Q ss_pred HHHHHHHcCCcCCCCCCc-ceeecC---CCCeeEe-ccCccc
Q 008419 267 ETVNWITVHTKPCPKCHK-PVEKNG---GCNLVSC-ICGQAF 303 (566)
Q Consensus 267 e~~~~i~~~tK~CPkC~~-~IEKn~---GCNhm~C-~C~~~F 303 (566)
-|..|+..| --||+|+. ++.+-+ -=--++| .|+-+|
T Consensus 26 LTE~Wv~~n-~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 26 LTEDWVYRQ-SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HHHHHHHHH-CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred hhHHHHHHC-CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 466788777 48999998 675422 1123555 355444
No 215
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.37 E-value=26 Score=30.17 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=25.3
Q ss_pred ccccccccccccccCCC--ceecCCCCccchhhHHHHH
Q 008419 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (566)
.....|.+|...|.... -.--.||+.||..|....+
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 34568999998876321 1223799999999976653
No 216
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.15 E-value=49 Score=27.15 Aligned_cols=16 Identities=38% Similarity=1.107 Sum_probs=12.1
Q ss_pred cCCCCCCcceeecCCC
Q 008419 277 KPCPKCHKPVEKNGGC 292 (566)
Q Consensus 277 K~CPkC~~~IEKn~GC 292 (566)
-.||.|+.++|+-..|
T Consensus 62 a~CPdC~q~LevLkAC 77 (101)
T 2jne_A 62 ALCPDCHQPLQVLKAC 77 (101)
T ss_dssp EECTTTCSBCEEEEET
T ss_pred ccCcchhhHHHHHHHh
Confidence 4899999999954433
No 217
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=30.09 E-value=22 Score=33.03 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=19.4
Q ss_pred CCcCCCCCCcce-eecCCCCeeEe-ccCccccc
Q 008419 275 HTKPCPKCHKPV-EKNGGCNLVSC-ICGQAFCW 305 (566)
Q Consensus 275 ~tK~CPkC~~~I-EKn~GCNhm~C-~C~~~FCw 305 (566)
.-+.||+|+..+ --...+.| +| +|++-|++
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred ccccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 348999999653 34555555 77 67766643
No 218
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.82 E-value=20 Score=35.25 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=19.0
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 008419 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (566)
Q Consensus 277 K~CPkC~~~IEK--n~GCNhm~C-~C~ 300 (566)
++||.|+.+|+| -+|=+-.+| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 799999999997 567666777 475
No 219
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.60 E-value=21 Score=35.00 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=18.8
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 008419 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (566)
Q Consensus 277 K~CPkC~~~IEK--n~GCNhm~C-~C~ 300 (566)
++||.|+.+|++ -+|=+-.+| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 789999999986 466666777 475
No 220
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.54 E-value=14 Score=28.65 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=13.7
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQ 301 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~ 301 (566)
-.|+.|+..++...+ .-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 367777777665433 335563 555
No 221
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.18 E-value=54 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=22.2
Q ss_pred ccccccccccccccCCCceecCCCCccchh
Q 008419 114 SSTVMCDICMEEVAGDKATKMDCGHCFCND 143 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~ 143 (566)
.....|..|-..+.....+...||..||..
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEeccc
Confidence 345689999887654346777899999964
No 222
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=28.77 E-value=22 Score=34.69 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=18.8
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 008419 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (566)
Q Consensus 277 K~CPkC~~~IEK--n~GCNhm~C-~C~ 300 (566)
++||.|+.+|++ -+|=.-.+| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 689999999986 466666777 476
No 223
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=28.72 E-value=53 Score=27.83 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=7.9
Q ss_pred eeeccccCC-CCCCCCc
Q 008419 237 QFCFSCLSE-AHSPCSC 252 (566)
Q Consensus 237 ~fC~~C~~~-~H~p~~C 252 (566)
..|+.|+.. -|....|
T Consensus 23 ~~C~~Cg~~~gH~~~~C 39 (124)
T 2lli_A 23 IICSYCGATDDHYSRHC 39 (124)
T ss_dssp CCCTTTCCTTTCCTTTG
T ss_pred CcCcCCCCcCCccCccc
Confidence 345555554 4554444
No 224
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.61 E-value=1e+02 Score=27.01 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=33.3
Q ss_pred cccccccccccccCCCceec-CCCCccchhhHHHHHH----hhh--ccCCcceeecCcccccc
Q 008419 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFI----VKI--NEGQSKRIRCMAHKCNA 170 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~----~~i--~~g~~~~i~CP~~~C~~ 170 (566)
....|.||.+. .+.... .|...||..|+..-+. ..| .+|. -.||. |..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~---W~C~~--C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQ---WYCYI--CHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTC---CCCTT--TCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCC---CEeec--ccC
Confidence 35689999874 244444 7999999999997764 222 3444 78998 664
No 225
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.48 E-value=30 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCccccccccccccccCCC--ceecCCCCccchhhHHHH
Q 008419 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (566)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (566)
|......|.+|...|.... -.--.||+.||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3445678999998876322 122379999999997664
No 226
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=28.20 E-value=65 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|+++.+ +|++.+.|+..|...+||++...+.++.
T Consensus 165 ekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 165 KKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 33444433 4999999999999999999999988874
No 227
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.61 E-value=37 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=14.3
Q ss_pred cCCCCCCc-ceeecCCCCeeEe-ccCc
Q 008419 277 KPCPKCHK-PVEKNGGCNLVSC-ICGQ 301 (566)
Q Consensus 277 K~CPkC~~-~IEKn~GCNhm~C-~C~~ 301 (566)
..||.|+. .|.....=.-+.| .||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 57999975 4544333333666 3553
No 228
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=27.47 E-value=46 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=14.5
Q ss_pred eeeccccCCCCCCCCchh
Q 008419 237 QFCFSCLSEAHSPCSCSM 254 (566)
Q Consensus 237 ~fC~~C~~~~H~p~~C~~ 254 (566)
..|+.|+..-|....|..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 469999999999777754
No 229
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.42 E-value=29 Score=27.40 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=24.2
Q ss_pred cccccccccccccCCC--ceecCCCCccchhhHHHH
Q 008419 115 STVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (566)
....|.+|...|.... -.--.||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4467999998876321 122379999999998754
No 230
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=27.35 E-value=30 Score=30.86 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=19.8
Q ss_pred CcCCCC--CCcceeecCCCCeeEe-ccCccccc
Q 008419 276 TKPCPK--CHKPVEKNGGCNLVSC-ICGQAFCW 305 (566)
Q Consensus 276 tK~CPk--C~~~IEKn~GCNhm~C-~C~~~FCw 305 (566)
-+.||+ |+.-+--..-=+..+| +||+-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 478999 9875432111145789 79987765
No 231
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=27.08 E-value=1.5e+02 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.+.|.++.++ |.+ .+.++..|+...||+++.++.++.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556677765 764 667799999999999999999884
No 232
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.88 E-value=18 Score=29.11 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=25.5
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~~FCw~C~~~~ 311 (566)
-.||-|..++. +-++-. |||-||-.|...|
T Consensus 8 ~~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp CBCTTTCSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcCCCCCeecHHHHHHH
Confidence 46999998887 678874 9999999998886
No 233
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=26.64 E-value=29 Score=27.83 Aligned_cols=27 Identities=26% Similarity=0.785 Sum_probs=17.4
Q ss_pred cCCCCCCcc--e----eecCCCCeeEec-cCccc
Q 008419 277 KPCPKCHKP--V----EKNGGCNLVSCI-CGQAF 303 (566)
Q Consensus 277 K~CPkC~~~--I----EKn~GCNhm~C~-C~~~F 303 (566)
=.||.|+.. | .|..|=-++.|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 479998765 2 234555667774 77766
No 234
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.31 E-value=1.5e+02 Score=20.49 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCChHHHHHHHH
Q 008419 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLV 88 (566)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~ 88 (566)
.+.|.++.++ |.+ ...++..|+...||+++-++.++
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566677765 775 55678999999999999998877
No 235
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.29 E-value=1.4e+02 Score=23.15 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.+.|.+++++ |. ..+.++..|+...||+++-++.++.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456677765 76 4677799999999999999999984
No 236
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.27 E-value=25 Score=30.75 Aligned_cols=27 Identities=30% Similarity=0.751 Sum_probs=0.0
Q ss_pred ccccccccc-cCCCceec--CCCCccchhh
Q 008419 118 MCDICMEEV-AGDKATKM--DCGHCFCNDC 144 (566)
Q Consensus 118 ~C~IC~e~~-~~~~~~~l--~CgH~fC~~C 144 (566)
.|.+|..++ -....-.. .|.|.+|..|
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred cccccCCCcccccCCCCCCCCCCccccccc
No 237
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.27 E-value=41 Score=30.00 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=30.4
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCccccccccccccCCCCc
Q 008419 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDHTW 317 (566)
Q Consensus 276 tK~CPkC~~~IEKn~GCNhm~C-~C~~~FCw~C~~~~~~~H~~ 317 (566)
...|..|..+.---.+. ...| .|++.+|-.|+....++..|
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~~~~~~W 109 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAHPEEQGW 109 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECCSSSSSC
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhcccccccCCCCcE
Confidence 47899999987766666 4688 59999999999654333334
No 238
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=25.37 E-value=99 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
+.|.++.+ .|++.+.|+..|..++||.+..++.++.
T Consensus 217 ~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444443 3999999999999999999999998874
No 239
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.37 E-value=38 Score=32.09 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=24.4
Q ss_pred ccccccccccccCCC--ceecCCCCccchhhHHHHH
Q 008419 116 TVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (566)
Q Consensus 116 ~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (566)
...|.+|...|.... ..--.||+.||..|-...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 358999998876321 1223799999999977653
No 240
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.96 E-value=62 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=24.6
Q ss_pred ccCCCCCCCCceEEecCCcceeeEec-CCCeeecccc
Q 008419 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCL 243 (566)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~ 243 (566)
+.|| +|.+...+-..+...|.|. |+...|.-=+
T Consensus 8 VKCp---~C~niq~VFShA~tvV~C~~Cg~~L~~PTG 41 (66)
T 1qxf_A 8 VKCP---DCEHEQVIFDHPSTIVKCIICGRTVAEPTG 41 (66)
T ss_dssp EECT---TTCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECC---CCCCceEEEecCceEEEcccCCCEEeecCC
Confidence 3688 6998877666566679997 9999986533
No 241
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.61 E-value=29 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=14.0
Q ss_pred ccchhhHHHHHHhhhcc
Q 008419 139 CFCNDCWTEHFIVKINE 155 (566)
Q Consensus 139 ~fC~~C~~~yl~~~i~~ 155 (566)
-||++|+..|+...-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887643
No 242
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.30 E-value=30 Score=28.45 Aligned_cols=16 Identities=19% Similarity=0.656 Sum_probs=13.5
Q ss_pred ccchhhHHHHHHhhhc
Q 008419 139 CFCNDCWTEHFIVKIN 154 (566)
Q Consensus 139 ~fC~~C~~~yl~~~i~ 154 (566)
-||++|+..|+...-.
T Consensus 41 GFCRNCLskWy~~aA~ 56 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAAT 56 (104)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999987654
No 243
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=23.09 E-value=89 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHH
Q 008419 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEK 82 (566)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~ 82 (566)
.++|.-|++-.|++...|..-|+..++|+-.
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~ 96 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAE 96 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHH
Confidence 3677888999999999999999999999644
No 244
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=23.06 E-value=2e+02 Score=21.57 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHH
Q 008419 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLV 88 (566)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~ 88 (566)
.|...|+.-..-++..|+-||-||---+|++...+..|-
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 456667777778899999999999999999999888775
No 245
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.71 E-value=43 Score=31.27 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=38.0
Q ss_pred HHHHHHHHhcChhhhhhhcCC-cccCCCCCCCCCccccccccccccccCCCceecCCCCccchhhHHH
Q 008419 81 EKLLAVLVENGKESLFNEAGV-TVIDDADPMLPLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTE 147 (566)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~gl-~~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~ 147 (566)
+.+.+.+...+.+.+|.-..+ .+..+. ..+......|++|-|.+......... |-..|.+|...
T Consensus 138 ~~~~~~il~~~~eelf~v~~v~~~~~p~--~~~~~~~~~C~~CGE~~~~~~~~~~~-g~~~C~~C~~~ 202 (204)
T 2gvi_A 138 DPVLEWISSLEDEEIFEYREIDGFTFEP--VKKNGAKVRCDVCGEYTYEADAKLLN-GKPVCKPDYYG 202 (204)
T ss_dssp HHHHHHHHHSCHHHHEEEEEESSCCCCC--CCCCCCEEECTTTCCEEEGGGCEEET-TEEECHHHHHC
T ss_pred HHHHHHHHhCChhHeEEEEEeeccCCCC--CCCCCCceECCCCCCchhhcceeeeC-CcEEChhhhcc
Confidence 344555555566777765444 322211 11223468899999998744433333 77899999753
No 246
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.27 E-value=23 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.3
Q ss_pred cccccccccccccc
Q 008419 114 SSTVMCDICMEEVA 127 (566)
Q Consensus 114 ~~~~~C~IC~e~~~ 127 (566)
++.|.||+|...+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 35699999998876
No 247
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.21 E-value=42 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=24.2
Q ss_pred ccccccccccccccCCC--ceecCCCCccchhhHHHH
Q 008419 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (566)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (566)
.....|.+|...|..-. -.--.||..||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34568999998876321 122379999999996554
No 248
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.46 E-value=4.5e+02 Score=23.69 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccC--CCCCchHHHHHHHHHHHHHHHH
Q 008419 423 EMTDEEREIKQHLFEDQQQQLEANV---EKLSKFLEEPF--DQYPDDKVMEIRMQVINLSVIT 480 (566)
Q Consensus 423 ~~~~~~~~~~~~lfe~~Q~~le~~~---E~L~~~le~~~--~~~~~~~i~~~k~~~~~l~~~~ 480 (566)
++|++++...+.|++..+.+..... ..+..-|...+ ...++.+|..+-.++.+|-.-.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999888888887766554322 22223333322 2334456777777776655433
No 249
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.30 E-value=24 Score=26.43 Aligned_cols=13 Identities=31% Similarity=0.812 Sum_probs=10.2
Q ss_pred CCcCCCCCCccee
Q 008419 275 HTKPCPKCHKPVE 287 (566)
Q Consensus 275 ~tK~CPkC~~~IE 287 (566)
+.-.||+|+.+..
T Consensus 29 ~l~~c~~cGe~~~ 41 (60)
T 3v2d_5 29 TLVPCPECKAMKP 41 (60)
T ss_dssp CCEECTTTCCEEC
T ss_pred ceeECCCCCCeec
Confidence 4568999998876
No 250
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.10 E-value=75 Score=23.94 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=24.1
Q ss_pred ccCCCCCCCCceEEecCCcceeeEec-CCCeeeccc
Q 008419 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSC 242 (566)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C 242 (566)
..|| +|.+...+-..+...|.|. |+...|.-=
T Consensus 16 VkCp---~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 16 VKCI---DCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp EECS---SSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred EECC---CCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 4688 6998777666556679997 999998643
No 251
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.97 E-value=36 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.611 Sum_probs=12.2
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCcc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCI-CGQA 302 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~-C~~~ 302 (566)
-.|..|+..++...+ .-|.|+ ||+.
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCcE
Confidence 356666555553332 335553 5543
No 252
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=20.96 E-value=27 Score=27.62 Aligned_cols=30 Identities=10% Similarity=-0.147 Sum_probs=23.6
Q ss_pred cCCCCCCcceeecCCCCeeEeccCccccccccccc
Q 008419 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (566)
Q Consensus 277 K~CPkC~~~IEKn~GCNhm~C~C~~~FCw~C~~~~ 311 (566)
-.||-|..++. +-++=.||+-||..|...|
T Consensus 15 ~~CpI~~~~m~-----dPV~~~cGhtf~r~~I~~~ 44 (85)
T 2kr4_A 15 FRDPLMDTLMT-----DPVRLPSGTVMDRSIILRH 44 (85)
T ss_dssp TBCTTTCSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred eECcccCchhc-----CCeECCCCCEECHHHHHHH
Confidence 47999998876 4555568999999998876
No 253
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.69 E-value=37 Score=30.31 Aligned_cols=31 Identities=16% Similarity=0.505 Sum_probs=22.6
Q ss_pred cccccccccccccCC-C--ceecCCCCccchhhH
Q 008419 115 STVMCDICMEEVAGD-K--ATKMDCGHCFCNDCW 145 (566)
Q Consensus 115 ~~~~C~IC~e~~~~~-~--~~~l~CgH~fC~~C~ 145 (566)
..-.|.+|..+|..- + ..-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999986421 1 223489999999996
No 254
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=20.63 E-value=5.3e+02 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008419 432 KQHLFEDQQQQLEANVEKLSKFLEE 456 (566)
Q Consensus 432 ~~~lfe~~Q~~le~~~E~L~~~le~ 456 (566)
..-+.+..+..++.+++.|.+.++-
T Consensus 163 l~P~~ee~r~kl~~~~~el~~~l~p 187 (243)
T 2a01_A 163 LAPYSDELRQRLAARLEALKENGGA 187 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcch
Confidence 3345667777777777777776653
No 255
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=20.62 E-value=2.2e+02 Score=20.17 Aligned_cols=38 Identities=13% Similarity=0.361 Sum_probs=33.3
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.+++..+++++ +++...++..|...++|++..++.+..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46777888898 799999999999999999999888774
No 256
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.41 E-value=1.6e+02 Score=20.26 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.|.++++ +|.+...|+..|+..+ |++.-.+-++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 3555555 5899999999999997 99888877763
No 257
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.19 E-value=45 Score=25.60 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=22.7
Q ss_pred cccccccccccCCC--ceecCCCCccchhhHHHH
Q 008419 117 VMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (566)
Q Consensus 117 ~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (566)
..|.+|...|.... -.--.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 37999998876321 112379999999997654
No 258
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=2.2e+02 Score=21.60 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008419 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (566)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (566)
.+.+..+++++ +|.....+..|...++|++.-++.+..
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 44566788888 799999999999999999999998864
Done!