BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008420
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 106/169 (62%), Gaps = 10/169 (5%)
Query: 119 IGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNV 178
IG VPGVEVGD F +RMEL L+G+H P +GI YM + GGY D +
Sbjct: 3 IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMK---DDGGELVATSIVSSGGYNDVL 59
Query: 179 EDGDVLIYSGQGGNINRK--DKEVTDQKLERGNLALEKSLRRGNEVRVIRGVKDL---ST 233
++ DVLIY+GQGGN+ +K ++ DQ+L GNLAL+ S+ + N VRVIRG+K+ S+
Sbjct: 60 DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 234 PTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQPEAFMTWKLI 282
K YVYDGLY ++E W E G G VFK+K R+ GQPE + WK +
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE--LPWKEV 166
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 104/169 (61%), Gaps = 10/169 (5%)
Query: 119 IGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNV 178
IG VPGVEVGD F +R EL L+G+H P +GI Y + GGY D +
Sbjct: 3 IGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYXK---DDGGELVATSIVSSGGYNDVL 59
Query: 179 EDGDVLIYSGQGGNINRK--DKEVTDQKLERGNLALEKSLRRGNEVRVIRGVKDL---ST 233
++ DVLIY+GQGGN+ +K ++ DQ+L GNLAL+ S+ + N VRVIRG+K+ S+
Sbjct: 60 DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 234 PTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQPEAFMTWKLI 282
K YVYDGLY ++E W E G G VFK+K R+ GQPE + WK +
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE--LPWKEV 166
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 138/289 (47%), Gaps = 43/289 (14%)
Query: 305 ENIPVSLVNDVDDEKGPA-HFTYLASLKYAQ---PVDSLEIFGGCDCRN--GC-VPGDQI 357
E V+LVN+VDDE P+ F +++ + Q P D GC+C + GC +
Sbjct: 26 EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDP-NFQSGCNCSSLGGCDLNNPSR 84
Query: 358 CPCIQK--NAGYLPYTSNG-VLVTQKSLVHECGPSCQCPPTCRNRVSQGGLRVHLEVFKT 414
C C+ + Y + G V ++++EC C C C NRV Q G + LE+FKT
Sbjct: 85 CECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKT 144
Query: 415 KDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDD---YLFDATRTYQPVEPV 471
K+KGWG+RS AG FI Y G+VI ++ + DD YLFD E
Sbjct: 145 KEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASE-- 202
Query: 472 PSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKH 531
+ A++ G+V+RF NHSCSPN+ +R +AF AIK
Sbjct: 203 -------------YTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKD 249
Query: 532 IPPMRELTYDYG-----LPDKAER---------KKNCLCGSSKCRGYFY 566
I P+ ELT+DY P ++++ ++ C CGS+ CRG+ +
Sbjct: 250 IQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 128/278 (46%), Gaps = 32/278 (11%)
Query: 295 VILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGC 351
++ D+ G E IP+ VN VD E P+++ Y++ P++ ++ C C + C
Sbjct: 4 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDC 63
Query: 352 VPGDQICPCIQKNAGYLPYTSNGVLV-----TQKSLVHECGPSCQCPPTCRNRVSQGGLR 406
+ +C + Y +G L+ + L+ EC +C C CRNRV Q GLR
Sbjct: 64 SSSNCMCGQLSMRCWY---DKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR 120
Query: 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQ 466
L++++T+D GWG+RS I G F+CEY G++I S E D YLFD
Sbjct: 121 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDS---EADVREEDSYLFDLDNKDG 177
Query: 467 PVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
V I A+ GNV+RF+NH C PN+ V +AF
Sbjct: 178 EV----------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAF 221
Query: 527 HAIKHIPPMRELTYDYG--LPDKAERKKNCLCGSSKCR 562
+ + I +L +DYG D + +C CGS KCR
Sbjct: 222 FSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 259
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 128/278 (46%), Gaps = 32/278 (11%)
Query: 295 VILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGC 351
++ D+ G E IP+ VN VD E P+++ Y++ P++ ++ C C + C
Sbjct: 30 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDC 89
Query: 352 VPGDQICPCIQKNAGYLPYTSNGVLV-----TQKSLVHECGPSCQCPPTCRNRVSQGGLR 406
+ +C + Y +G L+ + L+ EC +C C CRNRV Q GLR
Sbjct: 90 SSSNCMCGQLSMRCWY---DKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR 146
Query: 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQ 466
L++++T+D GWG+RS I G F+CEY G++I S E D YLFD
Sbjct: 147 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDS---EADVREEDSYLFDLDNKDG 203
Query: 467 PVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
V I A+ GNV+RF+NH C PN+ V +AF
Sbjct: 204 EV----------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAF 247
Query: 527 HAIKHIPPMRELTYDYG--LPDKAERKKNCLCGSSKCR 562
+ + I +L +DYG D + +C CGS KCR
Sbjct: 248 FSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 128/278 (46%), Gaps = 32/278 (11%)
Query: 295 VILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGC 351
++ D+ G E IP+ VN VD E P+++ Y++ P++ ++ C C + C
Sbjct: 28 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDC 87
Query: 352 VPGDQICPCIQKNAGYLPYTSNGVLV-----TQKSLVHECGPSCQCPPTCRNRVSQGGLR 406
+ +C + Y +G L+ + L+ EC +C C CRNRV Q GLR
Sbjct: 88 SSSNCMCGQLSMRCWY---DKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR 144
Query: 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQ 466
L++++T+D GWG+RS I G F+CEY G++I S E D YLFD
Sbjct: 145 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDS---EADVREEDSYLFDLDNKDG 201
Query: 467 PVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
V I A+ GNV+RF+NH C PN+ V +AF
Sbjct: 202 EV----------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAF 245
Query: 527 HAIKHIPPMRELTYDYG--LPDKAERKKNCLCGSSKCR 562
+ + I +L +DYG D + +C CGS KCR
Sbjct: 246 FSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 283
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 127/278 (45%), Gaps = 32/278 (11%)
Query: 295 VILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGC 351
++ D+ G E IP+ VN VD E P+++ Y++ P++ ++ C C + C
Sbjct: 29 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDC 88
Query: 352 VPGDQICPCIQKNAGYLPYTSNGVLV-----TQKSLVHECGPSCQCPPTCRNRVSQGGLR 406
+ +C + Y +G L+ + L+ EC +C C CRNRV Q GLR
Sbjct: 89 SSSNCMCGQLSMRCWY---DKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR 145
Query: 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQ 466
L++++T+D GWG+RS I G F+CEY G++I S E D YLFD
Sbjct: 146 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDS---EADVREEDSYLFDLDNKDG 202
Query: 467 PVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
V I A+ GNV+RF+NH C PN+ V +AF
Sbjct: 203 EV----------------YCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAF 246
Query: 527 HAIKHIPPMRELTYDYG--LPDKAERKKNCLCGSSKCR 562
+ + I +L +D G D + +C CGS KCR
Sbjct: 247 FSTRLIEAGEQLGFDAGERFWDIKGKLFSCRCGSPKCR 284
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 123/278 (44%), Gaps = 32/278 (11%)
Query: 295 VILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGC 351
+I D+ G EN+P+ VN VD E P + Y++ ++ ++ C C + C
Sbjct: 11 IICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDC 70
Query: 352 VPGDQIC-----PCIQKNAGYLPYTSNGVLVTQKSLVHECGPSCQCPPTCRNRVSQGGLR 406
+ +C C G L N + + L+ EC +C C C+NRV Q G++
Sbjct: 71 SSSNCLCGQLSIRCWYDKDGRLLQEFNKI---EPPLIFECNQACSCWRNCKNRVVQSGIK 127
Query: 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQ 466
V L++++T GWG+R+ I G FICEY G++I + E D YLFD
Sbjct: 128 VRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDA---EADVREDDSYLFDLDNKDG 184
Query: 467 PVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
V I A+ GN++RF+NH C PN+ V +AF
Sbjct: 185 EV----------------YCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAF 228
Query: 527 HAIKHIPPMRELTYDYG--LPDKAERKKNCLCGSSKCR 562
+ + I EL +DYG D + C CGS KC+
Sbjct: 229 FSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 123/278 (44%), Gaps = 32/278 (11%)
Query: 295 VILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGC 351
+I D+ G EN+P+ VN VD E P + Y++ ++ ++ C C + C
Sbjct: 9 IICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDC 68
Query: 352 VPGDQIC-----PCIQKNAGYLPYTSNGVLVTQKSLVHECGPSCQCPPTCRNRVSQGGLR 406
+ +C C G L N + + L+ EC +C C C+NRV Q G++
Sbjct: 69 SSSNCLCGQLSIRCWYDKDGRLLQEFNKI---EPPLIFECNQACSCWRNCKNRVVQSGIK 125
Query: 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQ 466
V L++++T GWG+R+ I G FICEY G++I + E D YLFD
Sbjct: 126 VRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDA---EADVREDDSYLFDLDNKDG 182
Query: 467 PVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
V I A+ GN++RF+NH C PN+ V +AF
Sbjct: 183 EV----------------YCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAF 226
Query: 527 HAIKHIPPMRELTYDYG--LPDKAERKKNCLCGSSKCR 562
+ + I EL +DYG D + C CGS KC+
Sbjct: 227 FSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCK 264
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 129/291 (44%), Gaps = 45/291 (15%)
Query: 299 DLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVDSLEI-FGGCDC-RNGCVPGDQ 356
D+ G EN+PV +T + +D +I F GC C + C+PG
Sbjct: 16 DVACGQENLPVGAWPPGAAPAP-FQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPG-- 72
Query: 357 ICPCIQKNAGYLPYTSNGVLVTQKS------LVHECGPSCQCPPTCRNRVSQGGLRVHLE 410
C C++ Y N L S V EC C+C CRNRV Q GL+ H +
Sbjct: 73 TCSCLRHGENY---DDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQ 129
Query: 411 VFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIE---ELGGENVDDYLFDATRTYQP 467
VFKT KGWGLR+ + I G F+CEYAG+V+ S+++ L ++ +Y+ A R +
Sbjct: 130 VFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYII-AIREHV- 187
Query: 468 VEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFH 527
NG F + +GN+ RF+NHSC PN+ PV S +A
Sbjct: 188 -------YNGQVMETF---VDPTYIGNIGRFLNHSCEPNLLMIPVRIDS---MVPKLALF 234
Query: 528 AIKHIPPMRELTYDYG-------------LPDKAERKKNCLCGSSKCRGYF 565
A K I P EL+YDY D + +K C CG+ C +
Sbjct: 235 AAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 131/302 (43%), Gaps = 49/302 (16%)
Query: 306 NIPVSLVNDVDDEKGPAHFTYL--ASLKYAQPVDSLEIFGGCDCRNGCVPGDQICPCIQK 363
+P+S+VN DD +F ++ + + PV GC C + C C+ +
Sbjct: 9 QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDE 68
Query: 364 NA-------------GYLPYTSNGV--------LVTQKSLVHECGPSCQCPPTCRNRVSQ 402
A Y S G ++ + ++EC C C C NRV +
Sbjct: 69 MAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVE 128
Query: 403 GGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVI-----DISKIEELGGENVDDY 457
G V L++F+TKD+GWG++ I+ G F+ Y G++I D + E D Y
Sbjct: 129 RGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVY 188
Query: 458 LFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNV-FWQPVLRQS 516
LF + P P A PL + + + RF+NHSC PN+ + V +
Sbjct: 189 LFALDKFSDPDSLDPLLAGQ------PLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHA 242
Query: 517 DKG-YDLHVAFHAIKHIPPMRELTYDY--GL---------PDKAERKKNCLCGSSKCRGY 564
DK +DL A AIK IP ELT+DY GL P K CLCG++KCRGY
Sbjct: 243 DKHIHDL--ALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGY 300
Query: 565 FY 566
+
Sbjct: 301 LW 302
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 59/308 (19%)
Query: 282 IQQWKDGISLRV---GVILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVDS 338
+Q+W+D ++ R G+I + N VD E P+ F Y+ K A +
Sbjct: 27 LQRWQDELNRRKNHKGMIF-------------VENTVDLEGPPSDFYYINEYKPAPGISL 73
Query: 339 L-EIFGGCDCRNGCVPGDQICPCIQKNAGYLPYTSNG-VLVTQKSLVHECGPSCQCPPTC 396
+ E GC C + Q C C + L Y N + + + ++EC CQC P C
Sbjct: 74 VNEATFGCSCTDCFF---QKC-CPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDC 129
Query: 397 RNRVSQGGLRVHLEVFKTKD-KGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVD 455
NR+ Q G + L +F+T + +GWG+++ I+ +F+ EY G+VI S+ E G+ D
Sbjct: 130 PNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVI-TSEEAERRGQFYD 188
Query: 456 D----YLFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQP 511
+ YLFD Y+ E + A GNV+ F+NHSC PN+
Sbjct: 189 NKGITYLFDL--DYESDE---------------FTVDAARYGNVSHFVNHSCDPNLQVFN 231
Query: 512 VLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGL--------------PDKAERKKNCLCG 557
V + +A + + I ELT+DY + P K + C CG
Sbjct: 232 VFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCG 291
Query: 558 SSKCRGYF 565
+ CRGY
Sbjct: 292 AVTCRGYL 299
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 81/188 (43%), Gaps = 27/188 (14%)
Query: 382 LVHECGPSCQCPPTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVI 441
L+ EC C C NR Q +EV T+ KGWGLR+ + + F+ EY G+V+
Sbjct: 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 442 D----ISKIEELGGENVDDYLFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVAR 497
D ++++E Y F A + + II A GN +R
Sbjct: 152 DHKEFKARVKEYARNKNIHYYFMALKNDE-------------------IIDATQKGNCSR 192
Query: 498 FMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPDKAERKKNCLCG 557
FMNHSC PN Q L V F K +P ELT+DY + + C CG
Sbjct: 193 FMNHSCEPNCETQKWTVNG----QLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCG 248
Query: 558 SSKCRGYF 565
S+ CRGY
Sbjct: 249 SANCRGYL 256
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 380 KSLVHECGP-SCQCPPTCRN-RVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYA 437
+ + EC P +C C C N R+ + LE F+ ++KGWG+R+ +P++AG FI EY
Sbjct: 45 RMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYL 104
Query: 438 GQVIDISKIEELGGENVDDYLFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVAR 497
G+V+ +E ++ Y + + Y + ++I + +GN AR
Sbjct: 105 GEVVSE---QEFRNRMIEQY-HNHSDHY------------CLNLDSGMVIDSYRMGNEAR 148
Query: 498 FMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPD-KAERKKNCLC 556
F+NHSC PN Q + S G + +A+K +P ELTYDY E+++ C C
Sbjct: 149 FINHSCDPNCEMQ---KWSVNGV-YRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKC 204
Query: 557 GSSKCRG 563
G KCRG
Sbjct: 205 GFEKCRG 211
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKD|B Chain B, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKE|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKF|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKG|A Chain A, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|B Chain B, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|C Chain C, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|D Chain D, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
Length = 210
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 119 IGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNV 178
G +PGV VG ++ FR+++ G+H P +AGI + GGYED+V
Sbjct: 20 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDV 72
Query: 179 EDGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE--------------KSLRRGN 220
++G+ Y+G GG R + +DQKL N AL + R+G
Sbjct: 73 DNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGK 132
Query: 221 EVRVIR---GVKDLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQPEAF 276
VRV+R G K + YDG+YK+ + W E+GKSG V++Y R +PE +
Sbjct: 133 PVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPW 191
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1
pdb|2ZO1|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 2
pdb|2ZO2|B Chain B, Mouse Np95 Sra Domain Non-Specific Dna Complex
pdb|3F8I|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3F8I|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3FDE|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
pdb|3FDE|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
Length = 212
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 119 IGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNV 178
G +PGV VG ++ FR+++ G+H P +AGI + GGYED+V
Sbjct: 7 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDV 59
Query: 179 EDGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE--------------KSLRRGN 220
++G+ Y+G GG R + +DQKL N AL + R+G
Sbjct: 60 DNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGK 119
Query: 221 EVRVIR---GVKDLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQPEAF 276
VRV+R G K + YDG+YK+ + W E+GKSG V++Y R +PE +
Sbjct: 120 PVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPW 178
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg,
Crystal Structure In Space Group C222(1)
Length = 212
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 119 IGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNV 178
G +PGV VG ++ FR+++ G+H P +AGI + GGYED+V
Sbjct: 7 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDV 59
Query: 179 EDGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE--------------KSLRRGN 220
++G+ Y+G GG R + +DQKL N AL + R+G
Sbjct: 60 DNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGK 119
Query: 221 EVRVIR---GVKDLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQPEAF 276
VRV+R G K + YDG+YK+ + W E+GKSG V++Y R +PE +
Sbjct: 120 PVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPW 178
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|B Chain B, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|C Chain C, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|D Chain D, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
Length = 212
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 120 GAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNVE 179
G +PG+ VG ++ FR+++ G+H P +AGI + GGYED+V+
Sbjct: 7 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDVD 59
Query: 180 DGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE---------------KSLRRGN 220
G+ Y+G GG R ++ DQKL N AL K R G
Sbjct: 60 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 119
Query: 221 EVRVIRGVK---DLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQP 273
VRV+R VK + + YDG+YK+ + W EKGKSG V++Y R +P
Sbjct: 120 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 175
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1
Protein
Length = 239
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 120 GAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNVE 179
G +PG+ VG ++ FR+++ G+H P +AGI + GGYED+V+
Sbjct: 15 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDVD 67
Query: 180 DGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE---------------KSLRRGN 220
G+ Y+G GG R ++ DQKL N AL K R G
Sbjct: 68 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 127
Query: 221 EVRVIRGVK---DLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQP 273
VRV+R VK + + YDG+YK+ + W EKGKSG V++Y R +P
Sbjct: 128 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 183
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain
Length = 208
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 120 GAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNVE 179
G +PG+ VG ++ FR+++ G+H P +AGI + GGYED+V+
Sbjct: 10 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDVD 62
Query: 180 DGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE---------------KSLRRGN 220
G+ Y+G GG R ++ DQKL N AL K R G
Sbjct: 63 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 122
Query: 221 EVRVIRGVK---DLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQP 273
VRV+R VK + + YDG+YK+ + W EKGKSG V++Y R +P
Sbjct: 123 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 178
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 380 KSLVHECGPS-CQCPPTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAG 438
+ L++EC P+ C C+N+ +E+F+T +GWGLR+ I+ G F+ EY G
Sbjct: 64 RMLLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVG 123
Query: 439 QVIDISKIEELGGENVDDYLFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVARF 498
++ID EE D T Y + + II A GN ARF
Sbjct: 124 ELIDE---EECRARIRYAQEHDITNFY------------MLTLDKDRIIDAGPKGNYARF 168
Query: 499 MNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPDKAERKKNCLCGS 558
MNH C PN Q + S G D V A+ I ELT++Y L K C CG+
Sbjct: 169 MNHCCQPNCETQ---KWSVNG-DTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGA 224
Query: 559 SKCRGYF 565
C G+
Sbjct: 225 PNCSGFL 231
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf1
Length = 212
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 29/176 (16%)
Query: 120 GAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNVE 179
G +PG+ VG + FR+++ G+H P +AGI + GGYED+V+
Sbjct: 7 GPIPGIPVGTXWRFRVQVSESGVHRPHVAGI-------HGRSNDGAYSLVLAGGYEDDVD 59
Query: 180 DGDVLIYSGQGG----NINRKDKEVTDQKLERGNLALE---------------KSLRRGN 220
G+ Y+G GG R ++ DQKL N AL K R G
Sbjct: 60 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 119
Query: 221 EVRVIRGVK---DLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQP 273
VRV+R VK + + YDG+YK+ + W EKGKSG V++Y R +P
Sbjct: 120 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 175
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 411 VFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATRTYQPVEP 470
V+++ G GL I AG + EYAG VI + + + Y
Sbjct: 56 VYRSPIHGRGLFCKRNIDAGEMVIEYAGNVI-----RSIQTDKREKYY------------ 98
Query: 471 VPSDANGVPKIPFPL----IITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAF 526
D+ G+ F + ++ A GN ARF+NHSC PN + + + K H+
Sbjct: 99 ---DSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQK----HIVI 151
Query: 527 HAIKHIPPMRELTYDYGLP-DKAERKKNCLCGSSKCRGYF 565
A++ I ELTYDY P + A K C CG+ KCR +
Sbjct: 152 FAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFL 191
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 120 GAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLXXXXXXXXXXXXGGYEDNVE 179
G +PG+ VG + FR+++ G+H P + GI + GG+ D V+
Sbjct: 31 GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGI-------HGRSNDGAYSLVLAGGFADEVD 83
Query: 180 DGDVLIYSGQGGNINRKDKEV----TDQKLERGNLAL---------------EKSLRRGN 220
GD Y+G GG +K + DQ L N AL ++ R G
Sbjct: 84 RGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGK 143
Query: 221 EVRVIR---GVKDLSTPTGKIYVYDGLYKIQESWTEKGKS-GCNVFKYKFIRVHGQPEAF 276
VRVIR G K + YDG+YK+ + W E S G V++Y R +P +
Sbjct: 144 PVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPW 203
Query: 277 MT 278
+
Sbjct: 204 TS 205
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 438 GQVIDISKIEEL-----------GGENVDDYLFDATRTYQPVEP---VPSDANGVPKIPF 483
G V+ I +I EL G +NV + D T Y+P+ P + + A G PKIP
Sbjct: 103 GLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAG-PKIPE 161
Query: 484 PLIITAKDVGN----VARFMNH 501
PLI KD G V R++
Sbjct: 162 PLIRQLKDGGKLLMPVGRYLQR 183
>pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 223
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 172 GGYEDNVEDGDVLIYSGQGGNINRKDKEVTDQKLERGNLALEKSL 216
G Y+ + E DVL +S IN K DQK ER N+ L K L
Sbjct: 184 GAYQWSYETHDVLSWSFSSKFINLK-----DQKSERSNIVLNKIL 223
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 279 WKLIQQWKDGISLRVGVILPDLTSGAENIPVSLVNDVDDEKGPAHFT 325
WK + +W + R L T+G IPV+ D+ GP FT
Sbjct: 339 WKCVSEWDNEQRAR----LLQFTTGTSRIPVNGFKDLQGSDGPRRFT 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,114,432
Number of Sequences: 62578
Number of extensions: 800571
Number of successful extensions: 1643
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 36
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)