Query 008420
Match_columns 566
No_of_seqs 458 out of 1819
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 11:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 3.2E-59 7E-64 436.0 14.6 153 116-272 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 2.8E-55 6E-60 411.9 11.6 153 116-272 1-155 (155)
3 KOG1082 Histone H3 (Lys9) meth 100.0 2E-53 4.3E-58 451.1 18.9 274 290-566 55-354 (364)
4 KOG4442 Clathrin coat binding 100.0 7.4E-42 1.6E-46 371.1 13.1 161 382-565 93-259 (729)
5 KOG1141 Predicted histone meth 100.0 1.5E-38 3.3E-43 346.1 8.5 161 284-446 662-838 (1262)
6 KOG1079 Transcriptional repres 100.0 5.1E-29 1.1E-33 269.8 11.3 160 341-545 538-711 (739)
7 KOG1080 Histone H3 (Lys4) meth 100.0 1E-28 2.2E-33 284.2 9.9 134 407-565 866-1004(1005)
8 smart00317 SET SET (Su(var)3-9 99.9 2.2E-22 4.7E-27 176.4 12.6 111 408-542 1-116 (116)
9 KOG1083 Putative transcription 99.9 8.7E-23 1.9E-27 228.9 3.0 127 395-545 1165-1296(1306)
10 PF05033 Pre-SET: Pre-SET moti 99.9 7.9E-22 1.7E-26 173.2 7.5 100 299-399 1-103 (103)
11 smart00468 PreSET N-terminal t 99.8 3.9E-21 8.4E-26 167.7 8.6 94 297-391 1-98 (98)
12 KOG1085 Predicted methyltransf 99.7 7.4E-17 1.6E-21 160.9 9.0 122 403-545 252-379 (392)
13 COG2940 Proteins containing SE 99.6 3.7E-16 8.1E-21 172.0 6.3 160 386-565 311-479 (480)
14 PF00856 SET: SET domain; Int 99.4 1.2E-12 2.6E-17 119.5 8.7 55 485-543 108-162 (162)
15 KOG1081 Transcription factor N 98.9 2.6E-10 5.7E-15 124.8 1.7 149 381-565 287-436 (463)
16 KOG1141 Predicted histone meth 98.8 5.7E-09 1.2E-13 116.4 7.5 270 293-565 873-1261(1262)
17 KOG2589 Histone tail methylase 98.6 1.9E-08 4.1E-13 104.3 4.2 113 416-558 136-252 (453)
18 KOG2461 Transcription factor B 97.9 1E-05 2.2E-10 87.3 4.8 113 405-546 26-146 (396)
19 smart00508 PostSET Cysteine-ri 96.0 0.0034 7.4E-08 41.7 1.3 15 551-565 2-16 (26)
20 COG3440 Predicted restriction 95.8 0.00031 6.6E-09 72.0 -6.4 138 124-269 10-149 (301)
21 smart00570 AWS associated with 94.4 0.015 3.2E-07 45.0 0.7 24 381-404 26-49 (51)
22 KOG2084 Predicted histone tail 89.9 0.48 1E-05 51.5 5.5 40 498-545 208-248 (482)
23 KOG1337 N-methyltransferase [G 69.6 3.8 8.2E-05 45.7 3.2 41 498-545 239-279 (472)
24 PF03638 TCR: Tesmin/TSO1-like 65.4 4.2 9.2E-05 30.3 1.6 37 342-400 3-40 (42)
25 KOG3813 Uncharacterized conser 56.5 6 0.00013 44.0 1.6 42 343-400 308-350 (640)
26 KOG1171 Metallothionein-like p 46.2 7 0.00015 42.6 0.1 37 340-398 215-252 (406)
27 PF08666 SAF: SAF domain; Int 40.0 16 0.00034 28.4 1.2 15 525-539 3-17 (63)
28 PF11403 Yeast_MT: Yeast metal 31.9 31 0.00067 24.5 1.5 18 342-360 21-38 (40)
29 KOG1081 Transcription factor N 30.0 19 0.00041 40.3 0.3 128 383-537 95-230 (463)
30 KOG2155 Tubulin-tyrosine ligas 28.4 36 0.00079 37.6 2.1 57 481-544 195-251 (631)
31 PF12218 End_N_terminal: N ter 27.4 23 0.00049 28.7 0.3 51 209-275 10-60 (67)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=3.2e-59 Score=436.03 Aligned_cols=153 Identities=61% Similarity=0.990 Sum_probs=145.5
Q ss_pred CCcccCCCCccCCceechhhHHhhhccCCCccCCceecccccCCCCcceEEEEEecCCCCCCCCCCcEEEEecCCCCcCC
Q 008420 116 KKRIGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLEEESVAVSVVSSGGYEDNVEDGDVLIYSGQGGNINR 195 (566)
Q Consensus 116 ~~~~G~vpGv~vGd~f~~R~e~~~~G~H~~~~~GI~~~~~~~~~~~~~~A~SIv~sg~y~dd~d~gd~l~YtG~Gg~~~~ 195 (566)
.|+||+||||+|||+|++|+||+++|||+++|+|||+++.+ +++++|+|||+||||+||+|+||+|+|||+||++.
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~- 77 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM- 77 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccC-
Confidence 58899999999999999999999999999999999998863 56799999999999999999999999999999965
Q ss_pred CCccccccccccchHHHHHHHHhCCccEEEeccc-CCCCCCCCeeeecCchhhhheeEecCCCCceeeeEeeeecCCC
Q 008420 196 KDKEVTDQKLERGNLALEKSLRRGNEVRVIRGVK-DLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQ 272 (566)
Q Consensus 196 ~~~~~~dQ~l~~gNlAL~~S~~~~~pVRViRg~~-~~~~~~~~~y~YDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gq 272 (566)
+.+|..||+|++||+||++|+++++|||||||++ ...+.|.++|||||||+|+++|.|+|++|+.||||+|+|+|||
T Consensus 78 ~~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 78 THGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CCCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 6789999999999999999999999999999999 5557889999999999999999999999999999999999998
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=2.8e-55 Score=411.93 Aligned_cols=153 Identities=58% Similarity=0.919 Sum_probs=123.7
Q ss_pred CCcccCCCCccCCceechhhHHhhhccCCCccCCceecccccCCCCcceEEEEEecCCCCCCCCCCcEEEEecCCCCcCC
Q 008420 116 KKRIGAVPGVEVGDIFFFRMELCLVGLHHPIMAGIGYMGLTVNLEEESVAVSVVSSGGYEDNVEDGDVLIYSGQGGNINR 195 (566)
Q Consensus 116 ~~~~G~vpGv~vGd~f~~R~e~~~~G~H~~~~~GI~~~~~~~~~~~~~~A~SIv~sg~y~dd~d~gd~l~YtG~Gg~~~~ 195 (566)
+|+|||||||+|||||++|+||+++|||+++|+||+|++.. +.++|+|||+||+|+||+|+||+|+|||+||++..
T Consensus 1 ~k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~----g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg~~~~ 76 (155)
T PF02182_consen 1 EKRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKE----GGPVAYSIVLSGGYEDDEDNGDVLIYTGQGGNDLS 76 (155)
T ss_dssp -TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTT----ESEEEEEEEESSSSTTCEECSSEEEEE-SSSB--T
T ss_pred CCcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCC----CceeeEEEEECCCcccccCCCCEEEEEcCCCcccc
Confidence 47899999999999999999999999999999999998762 33679999999999999999999999999999877
Q ss_pred CCccccccccccchHHHHHHHHhCCccEEEecccCCCC-CCCCe-eeecCchhhhheeEecCCCCceeeeEeeeecCCC
Q 008420 196 KDKEVTDQKLERGNLALEKSLRRGNEVRVIRGVKDLST-PTGKI-YVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQ 272 (566)
Q Consensus 196 ~~~~~~dQ~l~~gNlAL~~S~~~~~pVRViRg~~~~~~-~~~~~-y~YDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gq 272 (566)
+.+|..||+|++||+||++|+++++|||||||++..+. +|..+ |||||||+|+++|.+++++|+.||||+|+|+|||
T Consensus 77 ~~~~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 77 GNKQPKDQKLERGNLALANSMKTGNPVRVIRGYKLKSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ 155 (155)
T ss_dssp TT-B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred cccccccccccchhHHHHHHHhcCCCeEEEeecCCCCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence 77899999999999999999999999999999997753 45555 9999999999999999999999999999999998
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2e-53 Score=451.06 Aligned_cols=274 Identities=40% Similarity=0.710 Sum_probs=230.6
Q ss_pred cccccccccccCCCCCCCCeEEEeCCCCCCCCCCcEEccccccCCC-CCCCCCCCCCccCCCCcCCCCC-cccccccCCC
Q 008420 290 SLRVGVILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQP-VDSLEIFGGCDCRNGCVPGDQI-CPCIQKNAGY 367 (566)
Q Consensus 290 ~~r~~~i~~DiS~G~E~~PI~~vN~vD~~~~P~~F~Yi~~~~~~~~-~~~~~~~~gC~C~~~C~~~~~~-C~C~~~n~g~ 367 (566)
..+.+.+..||+.|.|.+||+++|+||++.+ ..|+|++..++..+ ........+|.|.+.|...... |.|...|++.
T Consensus 55 ~~~~~~~~~d~~~~~e~~~v~~~n~id~~~~-~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~ 133 (364)
T KOG1082|consen 55 KLEAKSELEDIALGSENLPVPLVNRIDEDAP-LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGL 133 (364)
T ss_pred ccccccccccccCccccCceeeeeeccCCcc-ccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhhCCc
Confidence 4456778999999999999999999998876 88999999988874 4445678899999888763222 9999999999
Q ss_pred CccCCCC---eeeecCceeeecCCCCCCCCCCCCccccCCceeeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHH
Q 008420 368 LPYTSNG---VLVTQKSLVHECGPSCQCPPTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDIS 444 (566)
Q Consensus 368 ~~Y~~~G---~l~~~~~~i~EC~~~C~C~~~C~NRv~Q~g~~~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ 444 (566)
++|+.+| .+...++.+|||++.|+|+++|.|||+|+|++.+|+||+|+.+|||||+++.|++|+|||||+||+++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~ 213 (364)
T KOG1082|consen 134 VAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSE 213 (364)
T ss_pred cccccCCccccccccCccccccccCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChH
Confidence 9999998 7788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceeeecccCCCCC----CCCC------CCCCCCCCCCCCeEEeeeecCCccccccCCCCCCeeEEEEEE
Q 008420 445 KIEELGGENVDDYLFDATRTYQPV----EPVP------SDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLR 514 (566)
Q Consensus 445 ea~~r~~~~~~~Ylfdl~~~~~~~----~p~~------~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~ 514 (566)
+++.+ .....|+++....+..+ .+.. ............++|||+..||++|||||||.||+.++.|+.
T Consensus 214 e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~ 291 (364)
T KOG1082|consen 214 EAQRR--THLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQ 291 (364)
T ss_pred Hhhhc--cccccccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeee
Confidence 99874 23345555433222111 1100 011223345678999999999999999999999999999999
Q ss_pred ecCCCCceEEEEEEccCCCCCCeEEEecCCCCC-----------CCCCeeeecCCCCCccccC
Q 008420 515 QSDKGYDLHVAFHAIKHIPPMRELTYDYGLPDK-----------AERKKNCLCGSSKCRGYFY 566 (566)
Q Consensus 515 ~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~~~-----------~~~~~~C~CGs~~CrG~ly 566 (566)
++.+...+||+|||+++|+||||||||||..+. ......|.||+.+||+.++
T Consensus 292 ~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~ 354 (364)
T KOG1082|consen 292 DEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLG 354 (364)
T ss_pred cCCccchheeeeeeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccC
Confidence 999999999999999999999999999997631 2367889999999999874
No 4
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-42 Score=371.13 Aligned_cols=161 Identities=36% Similarity=0.614 Sum_probs=144.2
Q ss_pred eeeecCC-CCC-CCCCCCCccccCCceeeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhcCC----CCC
Q 008420 382 LVHECGP-SCQ-CPPTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGE----NVD 455 (566)
Q Consensus 382 ~i~EC~~-~C~-C~~~C~NRv~Q~g~~~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~~~----~~~ 455 (566)
...||++ .|. |+..|.|+-+|+....+++||.|..+||||||.++|++|+||.||.||||+..|+++|... ...
T Consensus 93 t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~k 172 (729)
T KOG4442|consen 93 TSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIK 172 (729)
T ss_pred hhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCc
Confidence 4579999 798 9999999999999999999999999999999999999999999999999999999987533 233
Q ss_pred ceeeecccCCCCCCCCCCCCCCCCCCCCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCC
Q 008420 456 DYLFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPM 535 (566)
Q Consensus 456 ~Ylfdl~~~~~~~~p~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~G 535 (566)
+|.|. .+....+|||+.+||.||||||||+|||+++.|.+ ++..||+|||.|.|+||
T Consensus 173 h~Yfm-------------------~L~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV----~~~lRvGiFakk~I~~G 229 (729)
T KOG4442|consen 173 HYYFM-------------------ALQGGEYIDATKKGNLARFINHSCDPNAEVQKWTV----PDELRVGIFAKKVIKPG 229 (729)
T ss_pred eEEEE-------------------EecCCceecccccCcHHHhhcCCCCCCceeeeeee----CCeeEEEEeEecccCCC
Confidence 44442 12345799999999999999999999999999988 56999999999999999
Q ss_pred CeEEEecCCCCCCCCCeeeecCCCCCcccc
Q 008420 536 RELTYDYGLPDKAERKKNCLCGSSKCRGYF 565 (566)
Q Consensus 536 EELT~DYg~~~~~~~~~~C~CGs~~CrG~l 565 (566)
|||||||++........+|+||+++|+|||
T Consensus 230 EEITFDYqf~rYGr~AQ~CyCgeanC~G~I 259 (729)
T KOG4442|consen 230 EEITFDYQFDRYGRDAQPCYCGEANCRGWI 259 (729)
T ss_pred ceeeEecccccccccccccccCCccccccc
Confidence 999999999876677889999999999997
No 5
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-38 Score=346.08 Aligned_cols=161 Identities=29% Similarity=0.596 Sum_probs=125.1
Q ss_pred cccccccccccccccccCCCCCCCCeEEEeCCCCCCCCCCcEEccccccCCCC-C--CCCCCCCCccCCCCcCCCCCccc
Q 008420 284 QWKDGISLRVGVILPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPV-D--SLEIFGGCDCRNGCVPGDQICPC 360 (566)
Q Consensus 284 ~~~~~~~~r~~~i~~DiS~G~E~~PI~~vN~vD~~~~P~~F~Yi~~~~~~~~~-~--~~~~~~gC~C~~~C~~~~~~C~C 360 (566)
..++.+...+++-+.||+.|+|.+||..+|++|..++| .|.|....+-.... . ..++.++|+|..+|.+. ..|+|
T Consensus 662 ~~r~~~p~kp~~~~~Di~~g~e~vpis~~neids~~lp-q~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~-~kcac 739 (1262)
T KOG1141|consen 662 RHRAPNPLKPGNRCTDIPCGREHVPISEKNEIDSHRLP-QAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDS-MKCAC 739 (1262)
T ss_pred ecccCCCcCCcceeccccCCccccccceeecccCcCCc-cchhheeeccCCCcccccChhhhhcCCCCcchhhh-hhhhH
Confidence 33444455678899999999999999999999998755 78887766544321 1 13467899999999984 78999
Q ss_pred ccccCC--------CCc----cCCCCeeeecCceeeecCCCCCCC-CCCCCccccCCceeeEEEEEcCCCCCeeEEcccc
Q 008420 361 IQKNAG--------YLP----YTSNGVLVTQKSLVHECGPSCQCP-PTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPI 427 (566)
Q Consensus 361 ~~~n~g--------~~~----Y~~~G~l~~~~~~i~EC~~~C~C~-~~C~NRv~Q~g~~~~leVfrT~~kGwGVrA~~~I 427 (566)
.+.... ..+ |....+....+..+|||+..|+|. +.|.||++|+|.+++|++|+|.++|||+|.+++|
T Consensus 740 hQltvk~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi 819 (1262)
T KOG1141|consen 740 HQLTVKKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDI 819 (1262)
T ss_pred HHHHHHhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeec
Confidence 874211 111 221222223445799999999876 6899999999999999999999999999999999
Q ss_pred CCCCeEEEeccEeecHHHH
Q 008420 428 RAGAFICEYAGQVIDISKI 446 (566)
Q Consensus 428 ~~GtfI~EY~GEvit~~ea 446 (566)
.+|+|||-|.|.++++.-+
T Consensus 820 ~~g~fVciy~g~~l~~~~s 838 (1262)
T KOG1141|consen 820 TGGNFVCIYPGGALLHQIS 838 (1262)
T ss_pred CCceEEEEecchhhhhhhc
Confidence 9999999999999866544
No 6
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.96 E-value=5.1e-29 Score=269.83 Aligned_cols=160 Identities=29% Similarity=0.591 Sum_probs=139.0
Q ss_pred CCCCCccCCCCcCCCCCcccccccCCCCccCCCCeeeecCceeeecCCC-CCC-C---------CCCCCccccCCceeeE
Q 008420 341 IFGGCDCRNGCVPGDQICPCIQKNAGYLPYTSNGVLVTQKSLVHECGPS-CQC-P---------PTCRNRVSQGGLRVHL 409 (566)
Q Consensus 341 ~~~gC~C~~~C~~~~~~C~C~~~n~g~~~Y~~~G~l~~~~~~i~EC~~~-C~C-~---------~~C~NRv~Q~g~~~~l 409 (566)
.+.||.|...|.. ..|+|... ..||.|. |.| + .+|.|--+|++.+.++
T Consensus 538 rF~GC~Ck~QC~t--kqCpC~~A-------------------~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~ 596 (739)
T KOG1079|consen 538 RFPGCRCKAQCNT--KQCPCYLA-------------------VRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRV 596 (739)
T ss_pred cCCCCCccccccc--CcCchhhh-------------------ccccCchHHhccCcccccccCccccccchhhhhhhcce
Confidence 3567777777764 45777654 4899974 754 2 3899999999999999
Q ss_pred EEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhcCC---CCCceeeecccCCCCCCCCCCCCCCCCCCCCCeE
Q 008420 410 EVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGE---NVDDYLFDATRTYQPVEPVPSDANGVPKIPFPLI 486 (566)
Q Consensus 410 eVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~~~---~~~~Ylfdl~~~~~~~~p~~~~~~~~~~~~~~~~ 486 (566)
.|..+...|||+|+++...+++||.||+||+|+++||++|+.. +..+|+|+|. ..|+
T Consensus 597 llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln--------------------~dyv 656 (739)
T KOG1079|consen 597 LLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLN--------------------NDYV 656 (739)
T ss_pred eechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeecc--------------------ccce
Confidence 9999999999999999999999999999999999999998754 4678888653 3489
Q ss_pred EeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCC
Q 008420 487 ITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLP 545 (566)
Q Consensus 487 IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~ 545 (566)
|||+++||.+||+|||-+|||++..+++ .+..+|+|||.|.|.+||||||||.|+
T Consensus 657 iDs~rkGnk~rFANHS~nPNCYAkvm~V----~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 657 IDSTRKGNKIRFANHSFNPNCYAKVMMV----AGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred EeeeeecchhhhccCCCCCCcEEEEEEe----cCCcceeeeehhhcccCceeeeeeccC
Confidence 9999999999999999999999988777 678999999999999999999999996
No 7
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1e-28 Score=284.16 Aligned_cols=134 Identities=33% Similarity=0.645 Sum_probs=116.4
Q ss_pred eeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhcC----C-CCCceeeecccCCCCCCCCCCCCCCCCCC
Q 008420 407 VHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGG----E-NVDDYLFDATRTYQPVEPVPSDANGVPKI 481 (566)
Q Consensus 407 ~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~~----~-~~~~Ylfdl~~~~~~~~p~~~~~~~~~~~ 481 (566)
.+|...++..+||||||++.|.+|++|.||+||+|...-|+.|.. . .++.|+|.++
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid------------------- 926 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRID------------------- 926 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecc-------------------
Confidence 346777888899999999999999999999999998766655432 2 3789999754
Q ss_pred CCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCCCCCCCCeeeecCCCCC
Q 008420 482 PFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPDKAERKKNCLCGSSKC 561 (566)
Q Consensus 482 ~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~~~~~~~~~C~CGs~~C 561 (566)
...+|||+++||+||||||||+|||+...+.++ +..+|++||.|+|.+||||||||.+..... +.+|+|||++|
T Consensus 927 -~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~----g~~~IvIyakr~I~~~EElTYDYkF~~e~~-kipClCgap~C 1000 (1005)
T KOG1080|consen 927 -DEVVVDATKKGNIARFINHSCNPNCYAKVITVE----GDKRIVIYSKRDIAAGEELTYDYKFPTEDD-KIPCLCGAPNC 1000 (1005)
T ss_pred -cceEEeccccCchhheeecccCCCceeeEEEec----CeeEEEEEEecccccCceeeeecccccccc-ccccccCCCcc
Confidence 347999999999999999999999999888884 567999999999999999999999975544 78999999999
Q ss_pred cccc
Q 008420 562 RGYF 565 (566)
Q Consensus 562 rG~l 565 (566)
||+|
T Consensus 1001 rg~~ 1004 (1005)
T KOG1080|consen 1001 RGFL 1004 (1005)
T ss_pred cccc
Confidence 9987
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.88 E-value=2.2e-22 Score=176.44 Aligned_cols=111 Identities=42% Similarity=0.680 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhc---CCCC--CceeeecccCCCCCCCCCCCCCCCCCCC
Q 008420 408 HLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELG---GENV--DDYLFDATRTYQPVEPVPSDANGVPKIP 482 (566)
Q Consensus 408 ~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~---~~~~--~~Ylfdl~~~~~~~~p~~~~~~~~~~~~ 482 (566)
++++++++.+|+||+|+++|++|++|++|.|+++...++.... .... ..|+|+. .
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 60 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEI--------------------D 60 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEEC--------------------C
Confidence 3688999999999999999999999999999999887776532 1111 3566642 1
Q ss_pred CCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEec
Q 008420 483 FPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDY 542 (566)
Q Consensus 483 ~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DY 542 (566)
..++||+...||++|||||||.||+.+..+..+ +..++.|+|+|||++|||||+||
T Consensus 61 ~~~~id~~~~~~~~~~iNHsc~pN~~~~~~~~~----~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 61 SDLCIDARRKGNIARFINHSCEPNCELLFVEVN----GDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCEEEeCCccCcHHHeeCCCCCCCEEEEEEEEC----CCcEEEEEECCCcCCCCEEeecC
Confidence 247999999999999999999999999887653 33489999999999999999999
No 9
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.86 E-value=8.7e-23 Score=228.89 Aligned_cols=127 Identities=39% Similarity=0.636 Sum_probs=107.5
Q ss_pred CCCCcccc-CCceeeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhc----CCCCCceeeecccCCCCCC
Q 008420 395 TCRNRVSQ-GGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELG----GENVDDYLFDATRTYQPVE 469 (566)
Q Consensus 395 ~C~NRv~Q-~g~~~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~----~~~~~~Ylfdl~~~~~~~~ 469 (566)
+|.|+-+| ++.-.+|+||+.+.+||||++.++|++|+||+||+|||++.++++.+. ....+.|+.
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL---------- 1234 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCL---------- 1234 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCccccc----------
Confidence 37776655 467789999999999999999999999999999999999999886641 112233333
Q ss_pred CCCCCCCCCCCCCCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCC
Q 008420 470 PVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLP 545 (566)
Q Consensus 470 p~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~ 545 (566)
.+..+.+||+.++||.+||+||||.|||.+|.|-+ .+..|++|||+|||++||||||||+..
T Consensus 1235 ----------~I~p~l~id~~R~~n~~RfinhscKPNc~~qkwSV----NG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1235 ----------VIDPGLFIDIPRMGNGARFINHSCKPNCEMQKWSV----NGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ----------ccCccccCChhhccccccccccccCCCCccccccc----cceeeeeeeecCCCCCCceEEEecccc
Confidence 33456899999999999999999999999999877 689999999999999999999999874
No 10
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.85 E-value=7.9e-22 Score=173.16 Aligned_cols=100 Identities=43% Similarity=0.943 Sum_probs=74.1
Q ss_pred ccCCCCCCCCeEEEeCCCCCCCCCCcEEccccccCCCCC--CCCCCCCCccCCCCcCCCCCcccccccCCCCccCCCCee
Q 008420 299 DLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD--SLEIFGGCDCRNGCVPGDQICPCIQKNAGYLPYTSNGVL 376 (566)
Q Consensus 299 DiS~G~E~~PI~~vN~vD~~~~P~~F~Yi~~~~~~~~~~--~~~~~~gC~C~~~C~~~~~~C~C~~~n~g~~~Y~~~G~l 376 (566)
|||.|+|.+||+++|+||++.+|+.|+||+++++...+. ......||+|.++|.. ..+|+|.+++++.++|+.+|+|
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~-~~~C~C~~~~~~~~~Y~~~g~l 79 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSN-PSNCECLQRNGGIFAYDSNGRL 79 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTC-TTTSHHHCCTSSS-SB-TTSSB
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCC-CCCCcCccccCccccccCCCcC
Confidence 899999999999999999999889999999999888654 3456789999999944 4789999999988999999999
Q ss_pred e-ecCceeeecCCCCCCCCCCCCc
Q 008420 377 V-TQKSLVHECGPSCQCPPTCRNR 399 (566)
Q Consensus 377 ~-~~~~~i~EC~~~C~C~~~C~NR 399 (566)
. ....+||||++.|+|+.+|+||
T Consensus 80 ~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 80 RIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSSSTSEEE---TTSSS-TTSTT-
T ss_pred ccCCCCeEEeCCCCCCCCCCCCCC
Confidence 8 6789999999999999999998
No 11
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.84 E-value=3.9e-21 Score=167.69 Aligned_cols=94 Identities=36% Similarity=0.791 Sum_probs=84.7
Q ss_pred ccccCCCCCCCCeEEEeCCCCCCCCCCcEEccccccCCCCC---CCCCCCCCccCCCCcCCCCCcccccccCCCCcc-CC
Q 008420 297 LPDLTSGAENIPVSLVNDVDDEKGPAHFTYLASLKYAQPVD---SLEIFGGCDCRNGCVPGDQICPCIQKNAGYLPY-TS 372 (566)
Q Consensus 297 ~~DiS~G~E~~PI~~vN~vD~~~~P~~F~Yi~~~~~~~~~~---~~~~~~gC~C~~~C~~~~~~C~C~~~n~g~~~Y-~~ 372 (566)
..|||+|+|.+||++||+||++.+|+.|+||++++++.++. ...+..||+|.++|.+. ..|.|.+++++.+|| ..
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~-~~C~C~~~~~~~~~Y~~~ 79 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSS-NKCECARKNGGEFAYELN 79 (98)
T ss_pred CccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCC-CcCCcHhhcCCccCcccC
Confidence 36999999999999999999999889999999999988764 46678999999999984 459999999999999 77
Q ss_pred CCeeeecCceeeecCCCCC
Q 008420 373 NGVLVTQKSLVHECGPSCQ 391 (566)
Q Consensus 373 ~G~l~~~~~~i~EC~~~C~ 391 (566)
+++++..+++|||||+.|+
T Consensus 80 ~~~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 80 GGLRLKRKPLIYECNSRCS 98 (98)
T ss_pred CCEEeCCCCEEEcCCCCCC
Confidence 7888899999999999985
No 12
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.68 E-value=7.4e-17 Score=160.92 Aligned_cols=122 Identities=26% Similarity=0.326 Sum_probs=99.1
Q ss_pred CCceeeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhcCC-----CCCceeeecccCCCCCCCCCCCCCC
Q 008420 403 GGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGE-----NVDDYLFDATRTYQPVEPVPSDANG 477 (566)
Q Consensus 403 ~g~~~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~~~-----~~~~Ylfdl~~~~~~~~p~~~~~~~ 477 (566)
.|..-.|.+..-..+|.||+|...+.+|+||.||.|.+|...||..|... ..-.|+|...
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~--------------- 316 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFE--------------- 316 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeee---------------
Confidence 45556677766677999999999999999999999999998888765322 3345555321
Q ss_pred CCCCCCCeEEeeeec-CCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCC
Q 008420 478 VPKIPFPLIITAKDV-GNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLP 545 (566)
Q Consensus 478 ~~~~~~~~~IDA~~~-GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~ 545 (566)
.....|||||+.- +-.+|.||||-.+||....|.+ .+.||+.|.|.|||.+||||+||||..
T Consensus 317 --h~sk~yCiDAT~et~~lGRLINHS~~gNl~TKvv~I----dg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 317 --HNSKKYCIDATKETPWLGRLINHSVRGNLKTKVVEI----DGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred --ccCeeeeeecccccccchhhhcccccCcceeeEEEe----cCCceEEEEeccccccchhhhhhcccc
Confidence 1234689999864 5579999999999999988887 478999999999999999999999985
No 13
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.61 E-value=3.7e-16 Score=172.05 Aligned_cols=160 Identities=27% Similarity=0.410 Sum_probs=122.2
Q ss_pred cCCCCCCCCCCCCccccCCceeeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhcCCC-CCceeeecccC
Q 008420 386 CGPSCQCPPTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGEN-VDDYLFDATRT 464 (566)
Q Consensus 386 C~~~C~C~~~C~NRv~Q~g~~~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~~~~-~~~Ylfdl~~~ 464 (566)
+...+.+...+.|...+.....+..+..+...||||||.+.|++|++|.+|.|+++...++..+.... ...+.+..
T Consensus 311 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 387 (480)
T COG2940 311 SKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSF--- 387 (480)
T ss_pred ccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccch---
Confidence 34444444567777777777888888899999999999999999999999999999888876542211 11111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCC
Q 008420 465 YQPVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGL 544 (566)
Q Consensus 465 ~~~~~p~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~ 544 (566)
..+ .....++|+...|+++|||||||.||+.+...... +..++.++|++||.+|||||+||+.
T Consensus 388 -~~~------------~~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~----g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 388 -GLL------------EDKDKVRDSQKAGDVARFINHSCTPNCEASPIEVN----GIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred -hhc------------cccchhhhhhhcccccceeecCCCCCcceeccccc----ccceeeecccccchhhhhhcccccc
Confidence 001 01157899999999999999999999998765442 2679999999999999999999998
Q ss_pred CCCC--------CCCeeeecCCCCCcccc
Q 008420 545 PDKA--------ERKKNCLCGSSKCRGYF 565 (566)
Q Consensus 545 ~~~~--------~~~~~C~CGs~~CrG~l 565 (566)
..+. .....|.|++..|+++|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
T COG2940 451 SLEDNRELKKLLEKRWGCACGEDRCSHTM 479 (480)
T ss_pred ccccchhhhhhhhhhhccccCCCccCCCC
Confidence 6332 25788999999999986
No 14
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.38 E-value=1.2e-12 Score=119.51 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=45.8
Q ss_pred eEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecC
Q 008420 485 LIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYG 543 (566)
Q Consensus 485 ~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg 543 (566)
...++.....++.|+||||.||+.+..... .....+.|.|.|+|++|||||++||
T Consensus 108 ~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~----~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 108 DDRDGIALYPFADMLNHSCDPNCEVSFDFD----GDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEEETGGGGSEEESSTSEEEEEEEE----TTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccccCcHhHheccccccccceeeEee----cccceEEEEECCccCCCCEEEEEEC
Confidence 456777788999999999999999887643 4567999999999999999999998
No 15
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.93 E-value=2.6e-10 Score=124.80 Aligned_cols=149 Identities=31% Similarity=0.405 Sum_probs=106.1
Q ss_pred ceeeecCC-CCCCCCCCCCccccCCceeeEEEEEcCCCCCeeEEccccCCCCeEEEeccEeecHHHHHHhcCCCCCceee
Q 008420 381 SLVHECGP-SCQCPPTCRNRVSQGGLRVHLEVFKTKDKGWGLRSWDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLF 459 (566)
Q Consensus 381 ~~i~EC~~-~C~C~~~C~NRv~Q~g~~~~leVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r~~~~~~~Ylf 459 (566)
...+||-+ .|.+...|.|+-........ ... +|..+|.+| +|++++..+...+.......-+.
T Consensus 287 ~~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~ 350 (463)
T KOG1081|consen 287 MLAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQRVKESDLV 350 (463)
T ss_pred hhhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehhhhhccchh
Confidence 34566654 59999999998664433222 112 788888888 99999998876543222111111
Q ss_pred ecccCCCCCCCCCCCCCCCCCCCCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEE
Q 008420 460 DATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELT 539 (566)
Q Consensus 460 dl~~~~~~~~p~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT 539 (566)
+ .+..+ ......||+...||.+||+||||+||+.-+.+.+ ....++.+||.++|++|||||
T Consensus 351 ~---~~~~~------------~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~----~~~t~~~~~a~~~i~~g~e~t 411 (463)
T KOG1081|consen 351 D---FYMVF------------IQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQV----IGDTRVGLFAPRQIEAGEELT 411 (463)
T ss_pred h---hhhhh------------hhcccccccccccchhhhhcccCCCceeechhhe----ecccccccccccccccchhhh
Confidence 1 11111 1112289999999999999999999998877655 567899999999999999999
Q ss_pred EecCCCCCCCCCeeeecCCCCCcccc
Q 008420 540 YDYGLPDKAERKKNCLCGSSKCRGYF 565 (566)
Q Consensus 540 ~DYg~~~~~~~~~~C~CGs~~CrG~l 565 (566)
|+|..... .....|.|++.+|.+.+
T Consensus 412 ~~~n~~~~-~~~~~~~~~~e~~~~~~ 436 (463)
T KOG1081|consen 412 FNYNGNCE-GNEKRCCCGSENCTETK 436 (463)
T ss_pred heeecccc-CCcceEeecccccccCC
Confidence 99998643 24578999999998764
No 16
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.82 E-value=5.7e-09 Score=116.42 Aligned_cols=270 Identities=30% Similarity=0.511 Sum_probs=193.9
Q ss_pred ccccccccCCCCCCCCeEEEeCCCCCCCCCC------cEEccccccCCCCCCCCCCCCCccCCCCcCCCCCccccccc--
Q 008420 293 VGVILPDLTSGAENIPVSLVNDVDDEKGPAH------FTYLASLKYAQPVDSLEIFGGCDCRNGCVPGDQICPCIQKN-- 364 (566)
Q Consensus 293 ~~~i~~DiS~G~E~~PI~~vN~vD~~~~P~~------F~Yi~~~~~~~~~~~~~~~~gC~C~~~C~~~~~~C~C~~~n-- 364 (566)
.|+=..|.+.|-+.+|||++|.+|...+|.- |.|..+..... .......||.|.+.|.+. ..|.|.+..
T Consensus 873 ~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~~~~~~~s~--~~~~~~~~~s~d~hp~d~-~~~~~~~~~~~ 949 (1262)
T KOG1141|consen 873 KGLDVADFSLGTSGIPIPLVNSVDNDEPPSCEDSKRRFQYNDQVDISS--VSRDFCSGCSCDGHPSDA-SKCECQQLSIE 949 (1262)
T ss_pred cccchhhhhccccCCCCccccccccCCCccccccceeecccccchhhh--hccccccccccCCCCccc-CcccCCCCChh
Confidence 4677889999999999999999998876631 33333222221 223568899999999874 578887642
Q ss_pred --CCCC-ccCCCCe--ee--------ecCceeeecCCCCCCCCCCCCccccCCceeeEE--------EEEcCCCCCeeEE
Q 008420 365 --AGYL-PYTSNGV--LV--------TQKSLVHECGPSCQCPPTCRNRVSQGGLRVHLE--------VFKTKDKGWGLRS 423 (566)
Q Consensus 365 --~g~~-~Y~~~G~--l~--------~~~~~i~EC~~~C~C~~~C~NRv~Q~g~~~~le--------VfrT~~kGwGVrA 423 (566)
++.- +...+|. +. ..+...+||+..|.|...|.|+++|.+.+.+.+ ||++...|||+++
T Consensus 950 ~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~e 1029 (1262)
T KOG1141|consen 950 AMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVRE 1029 (1262)
T ss_pred hhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeecccccccccccccccccc
Confidence 1211 1222221 11 112357899999999999999999999877655 5667778999999
Q ss_pred ccccCCCCeEEEeccEeecHHHHHHhcCCCCCceeeeccc----------------------CCCCC-------------
Q 008420 424 WDPIRAGAFICEYAGQVIDISKIEELGGENVDDYLFDATR----------------------TYQPV------------- 468 (566)
Q Consensus 424 ~~~I~~GtfI~EY~GEvit~~ea~~r~~~~~~~Ylfdl~~----------------------~~~~~------------- 468 (566)
..+|+.-+|||+|+|...+..-+.+......+.|.-+++- .|..-
T Consensus 1030 dtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k 1109 (1262)
T KOG1141|consen 1030 DTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMK 1109 (1262)
T ss_pred cccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHH
Confidence 9999999999999999988877654322112222211100 00000
Q ss_pred -------CCC---------------------CCCC--------C-CC----------------CCCCCCeEEeeeecCCc
Q 008420 469 -------EPV---------------------PSDA--------N-GV----------------PKIPFPLIITAKDVGNV 495 (566)
Q Consensus 469 -------~p~---------------------~~~~--------~-~~----------------~~~~~~~~IDA~~~GNv 495 (566)
.+. .+.. . +. .....-|+|||+.-||+
T Consensus 1110 ~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNl 1189 (1262)
T KOG1141|consen 1110 MVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNL 1189 (1262)
T ss_pred HhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccch
Confidence 000 0000 0 00 00113489999999999
Q ss_pred cccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCCC--CCCCCeeeecCCCCCcccc
Q 008420 496 ARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPD--KAERKKNCLCGSSKCRGYF 565 (566)
Q Consensus 496 aRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~~--~~~~~~~C~CGs~~CrG~l 565 (566)
+||+||||+||+.+|+|+++.+|.++|++||||.+-|++|+||||||+|.- .+.+...|.||+.+|||+|
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 999999999999999999999999999999999999999999999999963 4557889999999999997
No 17
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.64 E-value=1.9e-08 Score=104.33 Aligned_cols=113 Identities=22% Similarity=0.305 Sum_probs=80.3
Q ss_pred CCCCeeEEccccCCCCeEEEeccEeecHHHHHHh--cCCCCCce--eeecccCCCCCCCCCCCCCCCCCCCCCeEEeeee
Q 008420 416 DKGWGLRSWDPIRAGAFICEYAGQVIDISKIEEL--GGENVDDY--LFDATRTYQPVEPVPSDANGVPKIPFPLIITAKD 491 (566)
Q Consensus 416 ~kGwGVrA~~~I~~GtfI~EY~GEvit~~ea~~r--~~~~~~~Y--lfdl~~~~~~~~p~~~~~~~~~~~~~~~~IDA~~ 491 (566)
..|=-|.|++.+.+|+=|-..+|-|+.-.+++++ ....+.+| +|..... .|.-
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~-----------------------caqL 192 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR-----------------------CAQL 192 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc-----------------------hhhh
Confidence 3566688999999999999999998766666553 11222222 2221111 0111
Q ss_pred cCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCCCCCCCCeeeecCC
Q 008420 492 VGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPDKAERKKNCLCGS 558 (566)
Q Consensus 492 ~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~~~~~~~~~C~CGs 558 (566)
+=..|+||||-|.|||.+.. .+.-.+.+-++|||+||||||--||..+.......|.|-+
T Consensus 193 wLGPaafINHDCrpnCkFvs-------~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 193 WLGPAAFINHDCRPNCKFVS-------TGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVT 252 (453)
T ss_pred eeccHHhhcCCCCCCceeec-------CCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEee
Confidence 22468999999999998754 3556899999999999999999999988777777777753
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.91 E-value=1e-05 Score=87.28 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=82.4
Q ss_pred ceeeEEEEEcC--CCCCeeEEccccCCCCeEEEeccEe-ecHHHHHHhcCCCCCceeeecccCCCCCCCCCCCCCCCCCC
Q 008420 405 LRVHLEVFKTK--DKGWGLRSWDPIRAGAFICEYAGQV-IDISKIEELGGENVDDYLFDATRTYQPVEPVPSDANGVPKI 481 (566)
Q Consensus 405 ~~~~leVfrT~--~kGwGVrA~~~I~~GtfI~EY~GEv-it~~ea~~r~~~~~~~Ylfdl~~~~~~~~p~~~~~~~~~~~ 481 (566)
+...|.|+.+. ..|.||++...|++|+--+-|.|++ ++..+ ...+..|.+.+-...
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~-----~~~n~~y~W~I~~~d---------------- 84 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS-----KSANNRYMWEIFSSD---------------- 84 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc-----ccccCcceEEEEeCC----------------
Confidence 55678888875 4889999999999999999999998 22211 123344544332110
Q ss_pred CCCeEEeee--ecCCccccccCCCC---CCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCCC
Q 008420 482 PFPLIITAK--DVGNVARFMNHSCS---PNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLPD 546 (566)
Q Consensus 482 ~~~~~IDA~--~~GNvaRFINHSC~---PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~~ 546 (566)
..-++||++ ...|+.||+|=+++ -|+.+.. ..-.|.+.|+|+|+|+|||.+.|+.++
T Consensus 85 ~~~~~iDg~d~~~sNWmRYV~~Ar~~eeQNL~A~Q--------~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 85 NGYEYIDGTDEEHSNWMRYVNSARSEEEQNLLAFQ--------IGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred CceEEeccCChhhcceeeeecccCChhhhhHHHHh--------ccCceEEEecccCCCCCeEEEEeccch
Confidence 233688987 56899999999888 4765432 234799999999999999999999863
No 19
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=95.97 E-value=0.0034 Score=41.70 Aligned_cols=15 Identities=53% Similarity=1.544 Sum_probs=13.8
Q ss_pred CeeeecCCCCCcccc
Q 008420 551 KKNCLCGSSKCRGYF 565 (566)
Q Consensus 551 ~~~C~CGs~~CrG~l 565 (566)
.+.|+|||++|||+|
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 478999999999998
No 20
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=95.80 E-value=0.00031 Score=72.01 Aligned_cols=138 Identities=13% Similarity=-0.047 Sum_probs=112.3
Q ss_pred CccCCceech-hhHHhhhccCCCccCCceecccccCCCCcceEEEEEecCCCCCCCCCCcEEEEecCCCCcCCCCccccc
Q 008420 124 GVEVGDIFFF-RMELCLVGLHHPIMAGIGYMGLTVNLEEESVAVSVVSSGGYEDNVEDGDVLIYSGQGGNINRKDKEVTD 202 (566)
Q Consensus 124 Gv~vGd~f~~-R~e~~~~G~H~~~~~GI~~~~~~~~~~~~~~A~SIv~sg~y~dd~d~gd~l~YtG~Gg~~~~~~~~~~d 202 (566)
++..+..+-. +.+..-.+.|-|++.++.+.+. ..+.+++.+|+|+++.+.+++..|++-|+. ..+..+..-
T Consensus 10 sf~~~~a~~~i~~~~~~~a~~kp~l~l~v~~~~-------~~~~~~~n~~~~~~e~~~~f~~l~~~~g~~-~~~~~~~~p 81 (301)
T COG3440 10 SFSQRNASLKIFGGNREAAPHKPILLLDVGRKI-------STFFITENQGIYETELIEPFIQLWSFFGPK-LQKYGVDAP 81 (301)
T ss_pred chhhhhhhhhhcccccccCCcCceeehhhHhhh-------hcccccccccccchhccchHHHHHhhcCcc-cccCCCCCc
Confidence 5555555544 6677888999999999988654 578899999999999999999999999986 334555566
Q ss_pred cccccchHHHHHHHHhCCccEEEecccCCC-CCCCCeeeecCchhhhheeEecCCCCceeeeEeeeec
Q 008420 203 QKLERGNLALEKSLRRGNEVRVIRGVKDLS-TPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRV 269 (566)
Q Consensus 203 Q~l~~gNlAL~~S~~~~~pVRViRg~~~~~-~~~~~~y~YDGLY~V~~~w~e~g~~G~~v~kf~L~R~ 269 (566)
+.+..|+.+++.+++.+-+-+++|+..... ..+-..+-|-|++.+...|.++.-.+..+..|...++
T Consensus 82 ~~~l~~d~~~h~~~k~~~~~l~~~~~~~~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~ 149 (301)
T COG3440 82 FELLQGDGKWHLDIKEGFDGLSIRTLPTEKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL 149 (301)
T ss_pred hHHhhccchhhhcccccCCccccCCCccHhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 677899999999999999999999986543 2344567788999999999999998888888777766
No 21
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=94.42 E-value=0.015 Score=45.01 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=21.3
Q ss_pred ceeeecCCCCCCCCCCCCccccCC
Q 008420 381 SLVHECGPSCQCPPTCRNRVSQGG 404 (566)
Q Consensus 381 ~~i~EC~~~C~C~~~C~NRv~Q~g 404 (566)
.+.+||+..|+|++.|.|+.+|+.
T Consensus 26 ~l~~EC~~~C~~G~~C~NqrFqk~ 49 (51)
T smart00570 26 MLLIECSSDCPCGSYCSNQRFQKR 49 (51)
T ss_pred HHhhhcCCCCCCCcCccCcccccC
Confidence 367999888999999999999975
No 22
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=89.88 E-value=0.48 Score=51.52 Aligned_cols=40 Identities=33% Similarity=0.396 Sum_probs=30.3
Q ss_pred cccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCC-eEEEecCCC
Q 008420 498 FMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMR-ELTYDYGLP 545 (566)
Q Consensus 498 FINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GE-ELT~DYg~~ 545 (566)
++||||.||+.. .. .....++.+...+.+++ ||+..|-..
T Consensus 208 ~~~hsC~pn~~~---~~-----~~~~~~~~~~~~~~~~~~~l~~~y~~~ 248 (482)
T KOG2084|consen 208 LFNHSCFPNISV---IF-----DGRGLALLVPAGIDAGEEELTISYTDP 248 (482)
T ss_pred hcccCCCCCeEE---EE-----CCceeEEEeecccCCCCCEEEEeeccc
Confidence 789999999982 22 13356667777888876 999999874
No 23
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=69.61 E-value=3.8 Score=45.67 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=31.6
Q ss_pred cccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCCC
Q 008420 498 FMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGLP 545 (566)
Q Consensus 498 FINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~~ 545 (566)
+.||+|++.. ..+. .....+-+.+.++|.+|||+.+.||..
T Consensus 239 ~~NH~~~~~~----~~~~---~~d~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 239 LLNHSPEVIK----AGYN---QEDEAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred hhccCchhcc----cccc---CCCCcEEEEEeeeecCCCeEEEecCCC
Confidence 6799999922 2222 233488999999999999999999983
No 24
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=65.35 E-value=4.2 Score=30.31 Aligned_cols=37 Identities=35% Similarity=1.105 Sum_probs=29.6
Q ss_pred CCCCccC-CCCcCCCCCcccccccCCCCccCCCCeeeecCceeeecCCCCCCCCCCCCcc
Q 008420 342 FGGCDCR-NGCVPGDQICPCIQKNAGYLPYTSNGVLVTQKSLVHECGPSCQCPPTCRNRV 400 (566)
Q Consensus 342 ~~gC~C~-~~C~~~~~~C~C~~~n~g~~~Y~~~G~l~~~~~~i~EC~~~C~C~~~C~NRv 400 (566)
..||.|. ..|.. .-|+|.+.. ..|++.|.| ..|.|..
T Consensus 3 ~~gC~Ckks~Clk--~YC~Cf~~g-------------------~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKKSKCLK--LYCECFQAG-------------------RFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccCcChhh--hhCHHHHCc-------------------CcCCCCccc-CCCCCcC
Confidence 5789996 67986 579998764 579999999 7888864
No 25
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=56.51 E-value=6 Score=44.01 Aligned_cols=42 Identities=33% Similarity=0.782 Sum_probs=28.0
Q ss_pred CCCccCCCCcCCCCCcccccccCCCCccCCCCeeeecCceeeecCCCCCCC-CCCCCcc
Q 008420 343 GGCDCRNGCVPGDQICPCIQKNAGYLPYTSNGVLVTQKSLVHECGPSCQCP-PTCRNRV 400 (566)
Q Consensus 343 ~gC~C~~~C~~~~~~C~C~~~n~g~~~Y~~~G~l~~~~~~i~EC~~~C~C~-~~C~NRv 400 (566)
-||+|..-|.+ ..|+|.+. |+...-....|- |+|. ..|.|-+
T Consensus 308 CGCsCr~~CdP--ETCaCSqa----------GIkCQvDr~~fP----CgC~rEgCgNp~ 350 (640)
T KOG3813|consen 308 CGCSCRGVCDP--ETCACSQA----------GIKCQVDRGEFP----CGCFREGCGNPE 350 (640)
T ss_pred hCCcccceeCh--hhcchhcc----------CceEeecCcccc----cccchhhcCCCc
Confidence 49999999998 68999874 333322222333 7776 6798864
No 26
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=46.15 E-value=7 Score=42.63 Aligned_cols=37 Identities=35% Similarity=1.109 Sum_probs=30.7
Q ss_pred CCCCCCccCC-CCcCCCCCcccccccCCCCccCCCCeeeecCceeeecCCCCCCCCCCCC
Q 008420 340 EIFGGCDCRN-GCVPGDQICPCIQKNAGYLPYTSNGVLVTQKSLVHECGPSCQCPPTCRN 398 (566)
Q Consensus 340 ~~~~gC~C~~-~C~~~~~~C~C~~~n~g~~~Y~~~G~l~~~~~~i~EC~~~C~C~~~C~N 398 (566)
....||+|.. +|.. .-|.|.+.+ .-|+.+|.| ..|.|
T Consensus 215 ~hkkGC~CkkSgClK--kYCECyQa~-------------------vlCS~nCkC-~~CkN 252 (406)
T KOG1171|consen 215 RHKKGCNCKKSGCLK--KYCECYQAG-------------------VLCSSNCKC-QGCKN 252 (406)
T ss_pred hhcCCCCCccccchH--HHHHHHhcC-------------------CCccccccC-cCCcc
Confidence 4578999985 8997 589999876 459999999 68999
No 27
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=39.96 E-value=16 Score=28.44 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.1
Q ss_pred EEEEccCCCCCCeEE
Q 008420 525 AFHAIKHIPPMRELT 539 (566)
Q Consensus 525 ~~FA~rdI~~GEELT 539 (566)
.+.|.+||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 467999999999995
No 28
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=31.90 E-value=31 Score=24.50 Aligned_cols=18 Identities=44% Similarity=1.298 Sum_probs=7.7
Q ss_pred CCCCccCCCCcCCCCCccc
Q 008420 342 FGGCDCRNGCVPGDQICPC 360 (566)
Q Consensus 342 ~~gC~C~~~C~~~~~~C~C 360 (566)
...|.|..+|.. +..|+|
T Consensus 21 qkscscptgcns-ddkcpc 38 (40)
T PF11403_consen 21 QKSCSCPTGCNS-DDKCPC 38 (40)
T ss_dssp TTS-SS-TTTTS-STT--T
T ss_pred hhcCCCCCCCCC-CCcCCC
Confidence 345666666654 345665
No 29
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=30.05 E-value=19 Score=40.30 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=73.2
Q ss_pred eeecCCCCCCCCCCCCccccCCceeeEEEEEcCCCCCe---eEEccccCCCCeEEEeccEeecHHH--HHHhcCC---CC
Q 008420 383 VHECGPSCQCPPTCRNRVSQGGLRVHLEVFKTKDKGWG---LRSWDPIRAGAFICEYAGQVIDISK--IEELGGE---NV 454 (566)
Q Consensus 383 i~EC~~~C~C~~~C~NRv~Q~g~~~~leVfrT~~kGwG---VrA~~~I~~GtfI~EY~GEvit~~e--a~~r~~~---~~ 454 (566)
-+++++.+.|.+.+.+-+ ++. .-+..+..+|+ .++...+..|++|..++|+..-..- ....... ..
T Consensus 95 c~~ggs~v~~~s~~~~~~--r~c----~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~ 168 (463)
T KOG1081|consen 95 CFKGGSLVTCKSRIQAPH--RKC----KPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKH 168 (463)
T ss_pred ccCCCccceecccccccc--ccC----cCccCcccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhcc
Confidence 345555666654444331 111 11234456666 7888899999999999999875541 0000000 00
Q ss_pred CceeeecccCCCCCCCCCCCCCCCCCCCCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCC
Q 008420 455 DDYLFDATRTYQPVEPVPSDANGVPKIPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPP 534 (566)
Q Consensus 455 ~~Ylfdl~~~~~~~~p~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~ 534 (566)
+.-.|-....|. ....++...|+..++++|++.|+-....+.. ...+++..++.+.++-
T Consensus 169 ~~~~f~~~~~~~-----------------~~~~~~~~~g~~~~~l~~~~~~~s~~~~~~~----~~~~r~~~~~~q~~~~ 227 (463)
T KOG1081|consen 169 DHVNFFGCYAWT-----------------HEKRVFPYEGQSSKLIPHSKKPASTMSEKIK----EAKARFGKLKAQWEAG 227 (463)
T ss_pred ccceeccchhhH-----------------HHhhhhhccchHHHhhhhccccchhhhhhhh----cccchhhhcccchhhc
Confidence 011111111110 1123344499999999999999987776655 3567777777777766
Q ss_pred CCe
Q 008420 535 MRE 537 (566)
Q Consensus 535 GEE 537 (566)
++-
T Consensus 228 ~~~ 230 (463)
T KOG1081|consen 228 IKQ 230 (463)
T ss_pred cch
Confidence 655
No 30
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=36 Score=37.60 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=41.9
Q ss_pred CCCCeEEeeeecCCccccccCCCCCCeeEEEEEEecCCCCceEEEEEEccCCCCCCeEEEecCC
Q 008420 481 IPFPLIITAKDVGNVARFMNHSCSPNVFWQPVLRQSDKGYDLHVAFHAIKHIPPMRELTYDYGL 544 (566)
Q Consensus 481 ~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~p~i~~FA~rdI~~GEELT~DYg~ 544 (566)
...-|++| .++.-+.||-+||..+.+.+.-- .....-.++-+++...|||+|-|+-.
T Consensus 195 ~svWYvMD-----efGsrvrHsdePnf~~aPf~fmP--q~vaYsimwp~k~~~tgeE~trDfas 251 (631)
T KOG2155|consen 195 KSVWYVMD-----EFGSRVRHSDEPNFRIAPFMFMP--QNVAYSIMWPTKPVNTGEEITRDFAS 251 (631)
T ss_pred cceeEEHh-----hhhhhhccCCCCcceeeeheecc--hhcceeEEeeccCCCCchHHHHHHhh
Confidence 34456777 34456789999999988877632 23345567899999999999988755
No 31
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=27.44 E-value=23 Score=28.70 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=25.6
Q ss_pred hHHHHHHHHhCCccEEEecccCCCCCCCCeeeecCchhhhheeEecCCCCceeeeEeeeecCCCccc
Q 008420 209 NLALEKSLRRGNEVRVIRGVKDLSTPTGKIYVYDGLYKIQESWTEKGKSGCNVFKYKFIRVHGQPEA 275 (566)
Q Consensus 209 NlAL~~S~~~~~pVRViRg~~~~~~~~~~~y~YDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gqp~~ 275 (566)
..||-..++..++=++|-|. +.. |+|. .-+.++-|+=-+|...|+||||-.
T Consensus 10 t~A~~a~l~a~~~g~~IDg~-------GlT------ykVs---~lPd~srf~N~rF~~eri~gqpl~ 60 (67)
T PF12218_consen 10 TAAITAALEASPVGRKIDGA-------GLT------YKVS---SLPDISRFKNARFVYERIPGQPLY 60 (67)
T ss_dssp HHHHHHHHHHS-TTS-EE-T-------T-E------EEES---S---GGGEES-EEEE-SSTT--EE
T ss_pred HHHHHHHHhccCCCeEEecC-------Cce------EEEe---eCccHHhhccceEEEeecCCCceE
Confidence 45777777777776777663 222 3332 124455566668889999999964
Done!