Query 008421
Match_columns 566
No_of_seqs 324 out of 2101
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.8 1.1E-19 3.6E-24 160.8 6.2 98 295-513 6-103 (111)
2 2kwj_A Zinc finger protein DPF 99.7 1.7E-17 5.7E-22 147.5 4.1 97 414-513 2-107 (114)
3 3v43_A Histone acetyltransfera 99.7 3E-17 1E-21 145.4 5.1 100 411-513 3-111 (112)
4 3asl_A E3 ubiquitin-protein li 99.4 3.5E-14 1.2E-18 115.3 4.1 56 458-513 12-68 (70)
5 3shb_A E3 ubiquitin-protein li 99.4 6.9E-14 2.4E-18 115.5 4.6 56 458-513 20-76 (77)
6 2e6s_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 114.5 5.4 56 458-513 20-76 (77)
7 1f62_A Transcription factor WS 99.4 2.5E-13 8.6E-18 103.3 3.3 48 298-345 2-49 (51)
8 2lri_C Autoimmune regulator; Z 99.3 6.5E-13 2.2E-17 106.5 4.5 49 296-347 12-60 (66)
9 1mm2_A MI2-beta; PHD, zinc fin 99.3 1.1E-12 3.9E-17 103.5 5.0 50 295-347 8-57 (61)
10 4gne_A Histone-lysine N-methyl 99.3 1.3E-12 4.3E-17 114.4 5.8 45 295-344 14-60 (107)
11 2l5u_A Chromodomain-helicase-D 99.3 8.9E-13 3E-17 104.1 3.6 50 295-347 10-59 (61)
12 1fp0_A KAP-1 corepressor; PHD 99.3 1.3E-12 4.3E-17 110.2 4.6 49 294-345 23-71 (88)
13 1xwh_A Autoimmune regulator; P 99.3 1.5E-12 5.2E-17 104.4 4.0 50 295-347 7-56 (66)
14 2yql_A PHD finger protein 21A; 99.3 1.5E-12 5.1E-17 101.0 3.4 48 295-345 8-55 (56)
15 2e6s_A E3 ubiquitin-protein li 99.3 2.4E-12 8.1E-17 106.3 4.7 52 294-345 24-76 (77)
16 3asl_A E3 ubiquitin-protein li 99.3 2.4E-12 8.1E-17 104.5 3.9 52 294-345 16-68 (70)
17 2e6r_A Jumonji/ARID domain-con 99.3 1.4E-12 4.8E-17 111.4 2.6 53 294-346 14-66 (92)
18 3v43_A Histone acetyltransfera 99.2 2.3E-12 7.9E-17 113.9 3.5 97 296-466 5-110 (112)
19 2puy_A PHD finger protein 21A; 99.2 2.6E-12 8.7E-17 101.1 3.0 48 295-345 4-51 (60)
20 2kwj_A Zinc finger protein DPF 99.2 2.3E-12 8E-17 114.2 2.5 94 297-465 2-105 (114)
21 3ask_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 122.9 4.4 56 458-513 168-224 (226)
22 1f62_A Transcription factor WS 99.2 4.1E-12 1.4E-16 96.6 2.2 48 466-513 2-49 (51)
23 3shb_A E3 ubiquitin-protein li 99.2 7.8E-12 2.7E-16 103.2 3.5 54 292-345 22-76 (77)
24 2e6r_A Jumonji/ARID domain-con 99.2 6.7E-12 2.3E-16 107.2 2.7 56 458-513 9-65 (92)
25 2yt5_A Metal-response element- 99.2 5.2E-12 1.8E-16 101.1 1.5 54 294-347 4-62 (66)
26 1wev_A Riken cDNA 1110020M19; 99.1 5.3E-12 1.8E-16 106.9 1.0 51 296-346 16-72 (88)
27 2ku3_A Bromodomain-containing 99.1 1.5E-11 5.2E-16 99.9 2.1 50 295-346 15-66 (71)
28 2lri_C Autoimmune regulator; Z 99.1 3.6E-11 1.2E-15 96.4 2.4 45 466-513 14-58 (66)
29 1mm2_A MI2-beta; PHD, zinc fin 99.1 1E-10 3.6E-15 92.2 4.6 45 466-513 11-55 (61)
30 3ask_A E3 ubiquitin-protein li 99.1 7.1E-11 2.4E-15 115.8 4.3 51 295-345 173-224 (226)
31 2l43_A N-teminal domain from h 99.0 4.3E-11 1.5E-15 101.3 1.9 51 295-347 24-76 (88)
32 3u5n_A E3 ubiquitin-protein li 99.0 8.2E-11 2.8E-15 114.7 4.2 51 294-347 5-55 (207)
33 3o36_A Transcription intermedi 99.0 1.1E-10 3.9E-15 111.6 4.3 50 295-347 3-52 (184)
34 1fp0_A KAP-1 corepressor; PHD 99.0 2.3E-10 7.7E-15 96.5 5.5 45 466-513 27-71 (88)
35 2puy_A PHD finger protein 21A; 99.0 7.6E-11 2.6E-15 92.7 1.2 45 466-513 7-51 (60)
36 2yql_A PHD finger protein 21A; 99.0 1.4E-10 4.7E-15 89.9 2.4 44 466-512 11-54 (56)
37 2k16_A Transcription initiatio 99.0 1.6E-10 5.6E-15 94.7 2.9 53 294-346 16-68 (75)
38 1xwh_A Autoimmune regulator; P 99.0 1.5E-10 5.3E-15 92.7 2.4 45 466-513 10-54 (66)
39 2ro1_A Transcription intermedi 98.9 3.1E-10 1.1E-14 109.1 4.2 47 297-346 3-49 (189)
40 2l5u_A Chromodomain-helicase-D 98.9 1.8E-10 6.3E-15 90.8 1.9 45 466-513 13-57 (61)
41 2ysm_A Myeloid/lymphoid or mix 98.9 3.4E-10 1.2E-14 99.6 3.6 50 298-347 56-105 (111)
42 1wev_A Riken cDNA 1110020M19; 98.9 2.6E-10 9E-15 96.5 1.8 48 466-513 18-71 (88)
43 2yt5_A Metal-response element- 98.8 4.2E-10 1.4E-14 89.9 0.7 48 466-513 8-60 (66)
44 2lv9_A Histone-lysine N-methyl 98.8 2.7E-09 9.4E-14 92.0 4.3 45 469-514 32-76 (98)
45 2ku3_A Bromodomain-containing 98.8 5.3E-10 1.8E-14 90.8 -0.4 46 466-513 18-65 (71)
46 2lv9_A Histone-lysine N-methyl 98.8 4.7E-09 1.6E-13 90.5 4.5 49 297-347 29-77 (98)
47 1wen_A Inhibitor of growth fam 98.7 6.4E-09 2.2E-13 84.4 4.4 49 295-347 15-66 (71)
48 2k16_A Transcription initiatio 98.7 1.1E-09 3.6E-14 89.8 -0.2 48 466-513 20-67 (75)
49 2vnf_A ING 4, P29ING4, inhibit 98.7 3E-09 1E-13 83.5 1.5 46 296-345 10-58 (60)
50 3o36_A Transcription intermedi 98.7 7E-09 2.4E-13 99.1 4.1 45 466-513 6-50 (184)
51 2jmi_A Protein YNG1, ING1 homo 98.7 5.8E-09 2E-13 88.3 3.0 46 296-345 26-75 (90)
52 2l43_A N-teminal domain from h 98.7 1.8E-09 6.3E-14 91.3 -0.5 46 466-513 27-74 (88)
53 3u5n_A E3 ubiquitin-protein li 98.7 7.1E-09 2.4E-13 100.9 3.5 45 466-513 9-53 (207)
54 2ro1_A Transcription intermedi 98.7 1.1E-08 3.6E-13 98.4 4.4 46 466-514 4-49 (189)
55 3c6w_A P28ING5, inhibitor of g 98.7 4.8E-09 1.7E-13 82.1 1.6 46 296-345 9-57 (59)
56 1weu_A Inhibitor of growth fam 98.6 2.3E-08 7.8E-13 84.9 5.1 50 294-347 34-86 (91)
57 2g6q_A Inhibitor of growth pro 98.6 1E-08 3.5E-13 81.1 1.8 47 296-346 11-60 (62)
58 2lbm_A Transcriptional regulat 98.5 1.9E-08 6.4E-13 92.1 0.7 50 295-347 62-118 (142)
59 3jvl_A Bromodomain-containing 98.5 1.3E-07 4.4E-12 84.2 5.7 95 162-258 8-114 (120)
60 2ouo_A HUNK1 protein, bromodom 98.4 1.2E-07 4.1E-12 85.7 4.7 92 164-257 23-126 (130)
61 2yyn_A Transcription intermedi 98.4 2.8E-07 9.5E-12 83.9 6.1 96 164-261 21-124 (135)
62 3g0l_A Hwalp4, bromodomain adj 98.4 2.9E-07 9.8E-12 81.6 5.4 96 162-260 12-115 (117)
63 2dat_A Possible global transcr 98.4 3.5E-07 1.2E-11 81.8 6.0 94 162-257 12-118 (123)
64 3uv4_A Second bromodomain of h 98.4 2.8E-07 9.6E-12 86.1 5.5 96 162-259 24-131 (158)
65 3iu5_A Protein polybromo-1; PB 98.4 4E-07 1.4E-11 80.6 6.1 95 164-260 6-113 (116)
66 2grc_A Probable global transcr 98.4 4E-07 1.4E-11 82.2 6.0 97 162-260 10-120 (129)
67 3d7c_A General control of amin 98.3 5.5E-07 1.9E-11 79.2 5.9 93 162-257 6-106 (112)
68 3nxb_A CAT eye syndrome critic 98.3 4.5E-07 1.6E-11 80.2 5.3 92 162-256 15-114 (116)
69 3fkm_X Signaling protein; brom 98.3 5.8E-07 2E-11 84.6 6.1 94 162-258 20-123 (166)
70 3mb4_A Protein polybromo-1; PB 98.3 6.7E-07 2.3E-11 80.1 5.5 95 163-259 15-122 (124)
71 3p1f_A CREB-binding protein; s 98.3 7E-07 2.4E-11 79.3 5.5 95 162-258 10-114 (119)
72 1e6i_A Transcriptional activat 98.3 6.9E-07 2.4E-11 79.7 5.4 92 163-257 13-112 (121)
73 2i7k_A Bromodomain-containing 98.3 6.1E-07 2.1E-11 79.7 4.9 93 166-260 11-110 (117)
74 4gne_A Histone-lysine N-methyl 98.3 2.9E-07 9.9E-12 80.4 2.6 43 466-513 17-61 (107)
75 3q2e_A Bromodomain and WD repe 98.2 1.1E-06 3.7E-11 78.6 6.0 96 162-260 9-113 (123)
76 3ljw_A Protein polybromo-1; al 98.2 6.3E-07 2.2E-11 79.8 4.3 94 162-257 7-113 (120)
77 4alg_A Bromodomain-containing 98.2 8.7E-07 3E-11 82.4 5.4 90 168-259 36-135 (154)
78 3mb3_A PH-interacting protein; 98.2 1.3E-06 4.5E-11 79.3 6.2 96 162-260 20-124 (135)
79 1x4i_A Inhibitor of growth pro 98.2 3.4E-07 1.2E-11 74.0 1.8 45 298-346 8-55 (70)
80 1wen_A Inhibitor of growth fam 98.2 8E-07 2.7E-11 72.0 3.8 42 469-513 20-64 (71)
81 3mqm_A Probable histone-lysine 98.2 1.5E-06 5.1E-11 78.0 5.5 66 192-259 48-116 (126)
82 2d9e_A Peregrin; four-helix bu 98.2 1E-06 3.5E-11 78.6 4.3 90 165-257 9-106 (121)
83 3o70_A PHD finger protein 13; 98.2 8.3E-07 2.9E-11 71.3 3.3 49 295-345 18-66 (68)
84 3tlp_A Protein polybromo-1; PB 98.2 1.6E-06 5.6E-11 80.0 5.8 70 192-263 64-136 (150)
85 2oss_A HUNK1 protein, bromodom 98.2 1.4E-06 4.9E-11 78.3 5.2 63 192-256 56-121 (127)
86 3k2j_A Protein polybromo-1; PB 98.2 1.4E-06 4.8E-11 78.7 4.9 97 162-260 16-125 (130)
87 3ql9_A Transcriptional regulat 98.2 1.4E-07 4.8E-12 84.9 -1.8 50 295-347 56-112 (129)
88 2ri7_A Nucleosome-remodeling f 98.1 1.3E-06 4.5E-11 82.3 4.7 90 164-256 73-170 (174)
89 2vnf_A ING 4, P29ING4, inhibit 98.1 3.4E-07 1.2E-11 71.8 0.5 42 469-513 14-58 (60)
90 2jmi_A Protein YNG1, ING1 homo 98.1 4.5E-07 1.5E-11 76.8 0.9 41 469-512 30-74 (90)
91 1weu_A Inhibitor of growth fam 98.1 1.5E-06 5.2E-11 73.7 4.1 42 469-513 40-84 (91)
92 3rcw_A Bromodomain-containing 98.1 1.8E-06 6.3E-11 78.3 4.8 95 162-259 12-114 (135)
93 3c6w_A P28ING5, inhibitor of g 98.1 5.1E-07 1.7E-11 70.6 0.4 42 469-513 13-57 (59)
94 2dkw_A Hypothetical protein KI 98.1 7.5E-06 2.6E-10 74.0 7.9 93 165-260 14-113 (131)
95 3hme_A Bromodomain-containing 98.1 2.1E-06 7.2E-11 76.7 4.1 90 164-255 14-110 (123)
96 2lbm_A Transcriptional regulat 98.1 7.7E-07 2.6E-11 81.4 1.1 46 466-514 65-117 (142)
97 1we9_A PHD finger family prote 98.0 2.1E-06 7.3E-11 67.8 2.2 52 296-347 6-59 (64)
98 3o7a_A PHD finger protein 13 v 98.0 2.7E-06 9.4E-11 64.6 2.4 47 297-345 5-51 (52)
99 2g6q_A Inhibitor of growth pro 97.9 1.6E-06 5.6E-11 68.3 0.7 42 469-513 15-59 (62)
100 1wew_A DNA-binding family prot 97.9 4.1E-06 1.4E-10 69.0 2.4 49 296-347 16-73 (78)
101 3o70_A PHD finger protein 13; 97.9 4.3E-06 1.5E-10 67.1 2.2 44 469-513 23-66 (68)
102 4bbq_A Lysine-specific demethy 97.9 4.3E-06 1.5E-10 73.8 2.4 39 476-514 72-114 (117)
103 3dai_A ATPase family AAA domai 97.9 2.1E-05 7E-10 70.9 6.7 64 192-257 43-113 (130)
104 2rsd_A E3 SUMO-protein ligase 97.8 5.6E-06 1.9E-10 66.4 2.3 46 298-346 12-65 (68)
105 1wee_A PHD finger family prote 97.8 7E-06 2.4E-10 66.5 2.5 50 297-347 17-67 (72)
106 1wem_A Death associated transc 97.8 3.4E-06 1.2E-10 69.0 0.4 48 297-347 17-71 (76)
107 2xb1_A Pygopus homolog 2, B-ce 97.8 5E-06 1.7E-10 72.4 1.4 49 297-347 4-62 (105)
108 2vpb_A Hpygo1, pygopus homolog 97.8 3.9E-06 1.3E-10 66.8 0.1 46 297-344 9-64 (65)
109 1we9_A PHD finger family prote 97.7 5.5E-06 1.9E-10 65.4 0.4 46 468-513 10-57 (64)
110 1x4i_A Inhibitor of growth pro 97.7 3.6E-06 1.2E-10 68.0 -1.2 41 470-513 11-54 (70)
111 3o7a_A PHD finger protein 13 v 97.7 1.1E-05 3.8E-10 61.2 1.3 43 469-512 8-50 (52)
112 3ql9_A Transcriptional regulat 97.7 3.2E-06 1.1E-10 76.0 -2.0 46 466-514 59-111 (129)
113 3uv5_A Transcription initiatio 97.6 3.8E-05 1.3E-09 77.3 5.5 93 163-258 14-114 (265)
114 2kgg_A Histone demethylase jar 97.6 7.4E-06 2.5E-10 62.2 0.2 48 465-512 3-52 (52)
115 1wee_A PHD finger family prote 97.6 1.4E-05 5E-10 64.6 1.9 45 469-513 20-65 (72)
116 2ri7_A Nucleosome-remodeling f 97.5 8.1E-06 2.8E-10 76.9 -1.0 51 295-346 7-59 (174)
117 3uv5_A Transcription initiatio 97.5 5.3E-05 1.8E-09 76.3 4.8 66 192-259 170-238 (265)
118 1wep_A PHF8; structural genomi 97.5 1.5E-05 5.3E-10 65.6 0.3 49 298-347 14-64 (79)
119 2kgg_A Histone demethylase jar 97.5 1.6E-05 5.3E-10 60.4 -0.1 46 297-344 3-52 (52)
120 2xb1_A Pygopus homolog 2, B-ce 97.5 1.3E-05 4.4E-10 69.8 -0.7 49 466-514 5-61 (105)
121 3aad_A Transcription initiatio 97.4 6.6E-05 2.3E-09 76.7 3.9 88 165-255 49-144 (292)
122 2r0y_A Chromatin structure-rem 97.4 0.00012 4E-09 75.4 5.5 61 197-258 200-263 (311)
123 3aad_A Transcription initiatio 97.4 0.00012 4.1E-09 74.7 5.4 66 192-259 203-271 (292)
124 2vpb_A Hpygo1, pygopus homolog 97.3 8.9E-06 3.1E-10 64.7 -3.3 47 466-512 10-64 (65)
125 2r10_A Chromatin structure-rem 97.3 0.00017 5.9E-09 75.7 5.5 61 197-258 250-313 (361)
126 1wew_A DNA-binding family prot 97.3 4.1E-05 1.4E-09 63.0 -0.1 45 469-513 20-71 (78)
127 1wil_A KIAA1045 protein; ring 97.2 8.3E-05 2.8E-09 61.3 1.5 52 295-347 14-77 (89)
128 1wem_A Death associated transc 97.2 1.5E-05 5E-10 65.2 -3.3 45 469-513 20-69 (76)
129 3kqi_A GRC5, PHD finger protei 97.1 8.4E-05 2.9E-09 60.6 0.7 48 298-346 12-61 (75)
130 1wep_A PHF8; structural genomi 97.1 4.7E-05 1.6E-09 62.7 -0.8 45 469-513 16-62 (79)
131 2rsd_A E3 SUMO-protein ligase 97.0 0.00018 6.2E-09 57.5 1.5 44 469-512 14-63 (68)
132 2r10_A Chromatin structure-rem 96.9 0.00066 2.3E-08 71.2 5.3 92 163-257 78-178 (361)
133 3kqi_A GRC5, PHD finger protei 96.8 0.00011 3.7E-09 60.0 -1.3 45 469-513 14-60 (75)
134 3lqh_A Histone-lysine N-methyl 96.8 0.0035 1.2E-07 59.7 8.9 65 197-262 101-168 (183)
135 3lqh_A Histone-lysine N-methyl 96.7 0.00036 1.2E-08 66.5 1.2 51 297-347 3-64 (183)
136 2r0y_A Chromatin structure-rem 96.6 0.0014 4.9E-08 67.3 5.1 88 165-257 30-128 (311)
137 1wil_A KIAA1045 protein; ring 96.6 0.00027 9.2E-09 58.3 -0.4 47 466-513 17-75 (89)
138 3iu6_A Protein polybromo-1; PB 96.3 0.0042 1.4E-07 56.9 5.3 68 198-266 47-119 (147)
139 3kv5_D JMJC domain-containing 96.2 0.00068 2.3E-08 73.8 -0.2 46 298-346 39-88 (488)
140 4bbq_A Lysine-specific demethy 95.8 0.0038 1.3E-07 54.7 2.5 40 308-347 72-115 (117)
141 3pur_A Lysine-specific demethy 95.3 0.005 1.7E-07 67.0 1.9 37 308-346 55-94 (528)
142 3kv5_D JMJC domain-containing 94.9 0.0021 7E-08 70.1 -2.8 45 469-513 41-87 (488)
143 3kv4_A PHD finger protein 8; e 94.3 0.0041 1.4E-07 66.9 -2.0 46 299-346 7-56 (447)
144 3pur_A Lysine-specific demethy 94.0 0.016 5.3E-07 63.2 1.6 40 474-513 53-93 (528)
145 3kv4_A PHD finger protein 8; e 93.6 0.0038 1.3E-07 67.1 -3.9 45 469-513 9-55 (447)
146 2ku7_A MLL1 PHD3-CYP33 RRM chi 90.3 0.046 1.6E-06 48.1 -0.3 35 478-512 1-42 (140)
147 2ku7_A MLL1 PHD3-CYP33 RRM chi 88.5 0.11 3.9E-06 45.5 0.8 38 310-347 1-45 (140)
148 3rsn_A SET1/ASH2 histone methy 85.9 0.45 1.5E-05 44.8 3.2 44 470-513 10-58 (177)
149 3rsn_A SET1/ASH2 histone methy 83.1 0.8 2.7E-05 43.0 3.6 45 301-345 9-58 (177)
150 3a1b_A DNA (cytosine-5)-methyl 81.9 0.31 1.1E-05 45.0 0.4 49 296-347 79-135 (159)
151 4b2u_A S67; toxin, ICK; NMR {S 73.8 1.1 3.7E-05 29.9 1.0 25 323-347 2-28 (36)
152 1vyx_A ORF K3, K3RING; zinc-bi 70.1 0.6 2.1E-05 35.9 -1.1 48 296-345 6-55 (60)
153 2pv0_B DNA (cytosine-5)-methyl 67.8 0.85 2.9E-05 47.9 -0.8 49 296-347 93-149 (386)
154 1iym_A EL5; ring-H2 finger, ub 66.7 3 0.0001 30.3 2.3 45 297-345 6-51 (55)
155 2kiz_A E3 ubiquitin-protein li 63.9 1.3 4.5E-05 34.0 -0.2 46 296-345 14-59 (69)
156 2d8s_A Cellular modulator of i 62.1 3.2 0.00011 33.6 1.8 47 297-345 16-66 (80)
157 2k1p_A Zinc finger RAN-binding 58.1 8.1 0.00028 26.0 2.9 27 334-361 3-29 (33)
158 2ect_A Ring finger protein 126 55.8 5.4 0.00018 31.2 2.1 46 296-345 15-60 (78)
159 1x4j_A Ring finger protein 38; 55.3 2.4 8.4E-05 33.1 -0.1 46 296-345 23-68 (75)
160 2l0b_A E3 ubiquitin-protein li 54.0 2.8 9.5E-05 34.4 0.1 47 295-345 39-85 (91)
161 2ecl_A Ring-box protein 2; RNF 53.2 4.8 0.00016 32.2 1.4 30 312-345 43-72 (81)
162 2ecm_A Ring finger and CHY zin 53.0 2.7 9.3E-05 30.5 -0.1 46 296-345 5-51 (55)
163 1iym_A EL5; ring-H2 finger, ub 49.1 5.1 0.00018 29.0 0.9 44 467-514 8-52 (55)
164 3a1b_A DNA (cytosine-5)-methyl 49.0 2.4 8.1E-05 39.1 -1.2 46 466-514 81-134 (159)
165 2cup_A Skeletal muscle LIM-pro 49.0 9.7 0.00033 31.3 2.7 74 413-494 5-95 (101)
166 2ct0_A Non-SMC element 1 homol 47.8 6.9 0.00024 31.3 1.5 44 297-344 16-59 (74)
167 2lq6_A Bromodomain-containing 47.1 8.1 0.00028 31.9 1.9 35 411-449 15-49 (87)
168 2ebr_A Nuclear pore complex pr 46.1 15 0.00052 26.9 3.0 31 332-363 6-36 (47)
169 2d8s_A Cellular modulator of i 45.8 5.2 0.00018 32.4 0.5 47 466-514 17-67 (80)
170 2lk0_A RNA-binding protein 5; 45.6 7 0.00024 26.2 1.0 26 335-361 3-28 (32)
171 1v87_A Deltex protein 2; ring- 45.0 3.7 0.00013 34.7 -0.5 49 297-345 26-90 (114)
172 2pv0_B DNA (cytosine-5)-methyl 44.5 3.2 0.00011 43.5 -1.2 46 466-514 95-148 (386)
173 2ecj_A Tripartite motif-contai 42.9 11 0.00039 27.3 1.9 44 296-343 15-58 (58)
174 2egp_A Tripartite motif-contai 41.9 23 0.00078 27.4 3.7 47 296-345 12-61 (79)
175 3k1l_B Fancl; UBC, ring, RWD, 41.0 7.6 0.00026 40.3 0.9 38 478-515 325-371 (381)
176 3gj3_B Nuclear pore complex pr 40.9 12 0.00041 25.4 1.6 28 334-362 4-31 (33)
177 2ect_A Ring finger protein 126 40.9 7.1 0.00024 30.5 0.6 27 484-514 35-61 (78)
178 2ep4_A Ring finger protein 24; 40.3 3.8 0.00013 31.8 -1.1 45 297-345 16-60 (74)
179 1x4j_A Ring finger protein 38; 40.3 3.7 0.00013 32.1 -1.2 45 466-514 25-69 (75)
180 2lq6_A Bromodomain-containing 39.8 12 0.00039 30.9 1.7 28 298-326 19-48 (87)
181 2ebq_A Nuclear pore complex pr 38.7 18 0.0006 26.6 2.3 33 331-364 5-37 (47)
182 2ebv_A Nuclear pore complex pr 37.0 28 0.00096 26.5 3.3 31 331-362 25-55 (57)
183 3gj5_B Nuclear pore complex pr 36.5 14 0.00049 25.2 1.4 28 334-362 4-31 (34)
184 3k1l_B Fancl; UBC, ring, RWD, 36.4 15 0.00051 38.1 2.2 32 297-328 309-345 (381)
185 2ysj_A Tripartite motif-contai 35.4 6.9 0.00023 29.3 -0.3 44 296-343 20-63 (63)
186 1v87_A Deltex protein 2; ring- 34.9 5.2 0.00018 33.8 -1.2 36 479-514 55-91 (114)
187 1bor_A Transcription factor PM 34.7 36 0.0012 24.9 3.6 41 296-346 6-46 (56)
188 2ecy_A TNF receptor-associated 34.5 12 0.00043 28.1 1.0 44 296-345 15-58 (66)
189 2ysl_A Tripartite motif-contai 33.2 13 0.00045 28.4 1.0 46 296-345 20-65 (73)
190 2rgt_A Fusion of LIM/homeobox 31.8 23 0.00078 32.2 2.5 94 412-513 5-124 (169)
191 6rxn_A Rubredoxin; electron tr 31.3 23 0.00077 25.8 1.9 33 481-514 6-39 (46)
192 4a0k_B E3 ubiquitin-protein li 30.9 11 0.00037 32.8 0.2 27 316-346 83-109 (117)
193 2ecl_A Ring-box protein 2; RNF 30.9 7.9 0.00027 30.9 -0.7 44 467-514 29-73 (81)
194 1weq_A PHD finger protein 7; s 30.4 28 0.00095 28.7 2.5 35 476-513 43-78 (85)
195 2d8t_A Dactylidin, ring finger 30.3 13 0.00043 28.6 0.4 43 296-345 15-57 (71)
196 3dpl_R Ring-box protein 1; ubi 30.2 12 0.00041 31.8 0.3 31 312-346 68-98 (106)
197 2jtn_A LIM domain-binding prot 29.6 22 0.00076 32.6 2.1 76 411-494 58-148 (182)
198 1weq_A PHD finger protein 7; s 29.6 29 0.00099 28.6 2.5 34 309-345 44-78 (85)
199 3gj8_B Nuclear pore complex pr 29.6 20 0.00068 29.7 1.5 29 333-362 61-89 (92)
200 2l0b_A E3 ubiquitin-protein li 29.4 4.8 0.00016 32.9 -2.3 45 466-514 42-86 (91)
201 1n0z_A ZNF265; zinc finger, RN 28.8 46 0.0016 23.9 3.2 29 333-362 10-40 (45)
202 3nw0_A Non-structural maintena 28.7 15 0.00053 35.8 0.8 44 297-344 181-224 (238)
203 2co8_A NEDD9 interacting prote 27.7 2.2E+02 0.0074 22.2 7.7 32 411-449 13-44 (82)
204 2d9g_A YY1-associated factor 2 25.4 42 0.0014 25.0 2.5 30 332-362 6-35 (53)
205 3l11_A E3 ubiquitin-protein li 25.3 22 0.00075 29.9 1.1 45 296-346 15-59 (115)
206 4a0k_B E3 ubiquitin-protein li 25.2 15 0.00051 31.9 0.0 31 480-514 79-109 (117)
207 1wxp_A THO complex subunit 1; 25.1 59 0.002 27.5 3.8 64 199-263 37-100 (110)
208 2ecw_A Tripartite motif-contai 24.6 17 0.00057 28.4 0.2 47 296-345 19-67 (85)
209 4rxn_A Rubredoxin; electron tr 24.0 36 0.0012 25.6 1.9 32 481-513 5-44 (54)
210 2ecv_A Tripartite motif-contai 23.3 20 0.00069 27.9 0.4 47 296-345 19-67 (85)
211 2ea6_A Ring finger protein 4; 23.2 15 0.0005 27.6 -0.4 46 296-345 15-64 (69)
212 1e8j_A Rubredoxin; iron-sulfur 23.1 83 0.0029 23.3 3.8 10 504-513 35-44 (52)
213 1b8t_A Protein (CRP1); LIM dom 22.0 25 0.00085 32.6 0.8 30 413-449 7-36 (192)
214 2ehe_A Four and A half LIM dom 21.3 1.5E+02 0.0052 22.9 5.3 30 413-448 15-44 (82)
215 1v5n_A PDI-like hypothetical p 21.1 26 0.00088 28.8 0.7 34 466-500 49-82 (89)
216 1e4u_A Transcriptional repress 21.1 37 0.0013 27.0 1.6 46 297-346 12-59 (78)
217 3l11_A E3 ubiquitin-protein li 21.0 37 0.0013 28.4 1.7 30 484-516 32-61 (115)
218 1zfo_A LAsp-1; LIM domain, zin 20.7 51 0.0017 21.5 1.9 28 414-448 4-31 (31)
219 1dx8_A Rubredoxin; electron tr 20.6 74 0.0025 25.1 3.2 10 504-513 39-48 (70)
220 2ecn_A Ring finger protein 141 20.5 18 0.00061 27.4 -0.5 42 296-345 15-56 (70)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=160.75 Aligned_cols=98 Identities=32% Similarity=0.931 Sum_probs=81.5
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccCCCCCCcccccccccCCCCccccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPRIQINQAG 374 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~~~~~R~~~~~~~ 374 (566)
+++.|.+|+...+.++||+|++|++.||++|+.+++..+|.+.|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~------------------------------ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK------------------------------ 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC------------------------------
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC------------------------------
Confidence 45689999987666677999999999999999988777777778887774
Q ss_pred CCCCCCCCCCCccccccccccccCcCCCCCCCCCCccccccccccCcccccCCCcccccCCccCCCccccccCCCccccc
Q 008421 375 DEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPKQLK 454 (566)
Q Consensus 375 ~~~~~~~~e~~~e~E~~s~~~~~~~~~~~~e~~~s~~~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~~~~~~ 454 (566)
T Consensus 56 -------------------------------------------------------------------------------- 55 (111)
T 2ysm_A 56 -------------------------------------------------------------------------------- 55 (111)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCCCcccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 455 RYGPCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 455 ~~~~~w~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+..+++..||.||.|+++||++|+.||+..+|.+.|+|+.|..
T Consensus 56 -----------~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 -----------VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp -----------CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred -----------cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 233444444556799999999999999999999999999999999964
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.67 E-value=1.7e-17 Score=147.50 Aligned_cols=97 Identities=32% Similarity=0.852 Sum_probs=80.6
Q ss_pred ccccccCccccc-----CCCcccccCCccCCCccccccCCCcccc---ccCCCCccCCCc-ccccccccCCCCceeeccC
Q 008421 414 NLCKICGRKVEE-----SSDKFRSCEHAFCYSKFYHERCLTPKQL---KRYGPCWFCPSC-LCRACLTDKDDEKIVMCDG 484 (566)
Q Consensus 414 ~~C~~Cgs~~~~-----~~~~Ll~C~~~~C~~k~yH~~CL~~~~~---~~~~~~w~Cp~C-~C~~C~~~~~~~~ll~Cd~ 484 (566)
++|.+|...... .++.|+.|+. | .+.||+.||..... ......|+|+.| .|.+|+...+++.||.||.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~--C-~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~ 78 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD--C-GRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDD 78 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS--S-CCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC--C-CCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCC
Confidence 468888765421 2568999997 8 57799999987532 122357999999 7999999888899999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 485 CDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 485 C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
|+++||++|++|||..+|.++|+|+.|..
T Consensus 79 C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 79 CDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp SCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccccccccCCCccCCCCCCeECccccc
Confidence 99999999999999999999999999964
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.67 E-value=3e-17 Score=145.39 Aligned_cols=100 Identities=32% Similarity=0.875 Sum_probs=82.1
Q ss_pred cccccccccCccccc----CCCcccccCCccCCCccccccCCCccc--c-ccCCCCccCCCc-ccccccccC-CCCceee
Q 008421 411 ESANLCKICGRKVEE----SSDKFRSCEHAFCYSKFYHERCLTPKQ--L-KRYGPCWFCPSC-LCRACLTDK-DDEKIVM 481 (566)
Q Consensus 411 ~~~~~C~~Cgs~~~~----~~~~Ll~C~~~~C~~k~yH~~CL~~~~--~-~~~~~~w~Cp~C-~C~~C~~~~-~~~~ll~ 481 (566)
.+..+|.+|.+.... .++.|+.|+. | ++.||..||.... . ......|+|+.| .|.+|+..+ +++.||+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~--C-~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~ 79 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCAD--C-GNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLF 79 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTT--T-CCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEE
T ss_pred ccCccccccCCchhhCcCCCchhceEhhh--c-CCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEE
Confidence 366789999876432 2568999997 8 6789999997531 1 123458999999 799999753 5679999
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 482 CDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 482 Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
||.|+++||++||+|||..+|.+.|+|+.|+.
T Consensus 80 Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 80 CDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 99999999999999999999999999999974
No 4
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.45 E-value=3.5e-14 Score=115.27 Aligned_cols=56 Identities=41% Similarity=1.133 Sum_probs=53.3
Q ss_pred CCccCCCcccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCC-CcccCCCcc
Q 008421 458 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCDA 513 (566)
Q Consensus 458 ~~w~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~-~W~C~~C~~ 513 (566)
..|+|+.|.|.+|++..+++.||.||.|+++||++||+|||..+|.+ .|+|+.|..
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 47999999999999988899999999999999999999999999999 999999974
No 5
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.43 E-value=6.9e-14 Score=115.47 Aligned_cols=56 Identities=41% Similarity=1.141 Sum_probs=53.0
Q ss_pred CCccCCCcccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCC-cccCCCcc
Q 008421 458 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGN-WFCRKCDA 513 (566)
Q Consensus 458 ~~w~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~-W~C~~C~~ 513 (566)
..|+|+.|.|.+|++..+++.||+||.|+++||++||.|||..+|.+. |+|+.|+.
T Consensus 20 ~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 479999999999999999999999999999999999999999999999 99999974
No 6
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=114.51 Aligned_cols=56 Identities=38% Similarity=1.083 Sum_probs=53.0
Q ss_pred CCccCCCcccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCC-CcccCCCcc
Q 008421 458 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCDA 513 (566)
Q Consensus 458 ~~w~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~-~W~C~~C~~ 513 (566)
..|+|+.|.|.+|+...+++.||+||.|+++||++||+|||..+|.+ .|+|+.|..
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 46999999999999988899999999999999999999999999999 999999964
No 7
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.36 E-value=2.5e-13 Score=103.30 Aligned_cols=48 Identities=31% Similarity=1.012 Sum_probs=45.3
Q ss_pred cccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 298 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 298 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
.|.+|+..++++.||+||+|+++||++|++|+++.+|+|+|||+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 599999988888999999999999999999999999999999999974
No 8
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.33 E-value=6.5e-13 Score=106.51 Aligned_cols=49 Identities=27% Similarity=0.592 Sum_probs=44.3
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
...|.+|++ +++||+||+|+++||++|++|+|..+|+|+|||+.|....
T Consensus 12 ~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 347999986 6789999999999999999999999999999999998544
No 9
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.32 E-value=1.1e-12 Score=103.51 Aligned_cols=50 Identities=36% Similarity=1.045 Sum_probs=45.0
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
++..|.+|+. +++||+||+|+++||++|+.|+++.+|.|+|||+.|....
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4558999986 6799999999999999999999999999999999998543
No 10
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.31 E-value=1.3e-12 Score=114.41 Aligned_cols=45 Identities=29% Similarity=0.767 Sum_probs=40.1
Q ss_pred CcccccccccccCCCCceeec--cCCCCCcccccCCCCCCCCCCCccCcccc
Q 008421 295 KVHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAFKDIPPKSWYCARCT 344 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 344 (566)
+++.|.+|+. +++||+|| +|+++||++|+ +|..+|+|+||||.|.
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl--~L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCL--NLTQPPYGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGG--TCSSCCSSCCCCGGGB
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccC--cCCcCCCCCEECCCCC
Confidence 4458999985 78999999 89999999999 4899999999999985
No 11
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=8.9e-13 Score=104.14 Aligned_cols=50 Identities=28% Similarity=0.961 Sum_probs=45.4
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
++..|.+|+. +++||+||+|+++||++|+.|+++.+|+|+|||+.|...+
T Consensus 10 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 10 HQDYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp CCSSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 4558999987 6799999999999999999999999999999999998654
No 12
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.30 E-value=1.3e-12 Score=110.23 Aligned_cols=49 Identities=35% Similarity=0.929 Sum_probs=44.9
Q ss_pred cCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
.+++.|.+|+. +++||+||+|+++||++|+.||++.+|+|+|+|+.|..
T Consensus 23 ~n~~~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCC---CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 34568999997 67899999999999999999999999999999999984
No 13
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.28 E-value=1.5e-12 Score=104.38 Aligned_cols=50 Identities=28% Similarity=0.942 Sum_probs=45.5
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
+++.|.+|+. +++||+||+|+++||++|+.||++.+|.|+|||+.|....
T Consensus 7 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRD---GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCC---CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 4558999997 6799999999999999999999999999999999998654
No 14
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=101.04 Aligned_cols=48 Identities=38% Similarity=1.044 Sum_probs=43.9
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+++.|.+|+. ++.||+||.|+++||++|+.||++.+|+|+|||+.|..
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4558999997 57999999999999999999999999999999999973
No 15
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.4e-12 Score=106.33 Aligned_cols=52 Identities=33% Similarity=0.960 Sum_probs=47.9
Q ss_pred cCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCC-CccCccccc
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCTA 345 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~~ 345 (566)
-.+..|.+|+..++++.||+||+|+++||++|++|||+.+|+| +|||+.|..
T Consensus 24 C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 24 CHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3456899999988899999999999999999999999999999 999999973
No 16
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.25 E-value=2.4e-12 Score=104.47 Aligned_cols=52 Identities=29% Similarity=1.013 Sum_probs=47.3
Q ss_pred cCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCC-CccCccccc
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCTA 345 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~~ 345 (566)
-.+..|.+|++.++++.||+||+|+++||++||+|||+.+|+| +|||+.|..
T Consensus 16 C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 16 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp CTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3455788999888899999999999999999999999999999 999999974
No 17
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=111.35 Aligned_cols=53 Identities=28% Similarity=0.839 Sum_probs=47.8
Q ss_pred cCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
.++..|.+|+...+.+.||+||+|+++||++|+.|||..+|+|+|||+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34558999999777788999999999999999999999999999999999753
No 18
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.24 E-value=2.3e-12 Score=113.92 Aligned_cols=97 Identities=22% Similarity=0.646 Sum_probs=71.6
Q ss_pred cccccccccc------cCCCCceeeccCCCCCcccccCCC--C-CCCCCCCccCccccccCCCCCCcccccccccCCCCc
Q 008421 296 VHTCRQCEEK------AGEKDGLVCDSCEEMYHLSCIEPA--F-KDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAP 366 (566)
Q Consensus 296 ~~~C~~C~~~------~~~~~ll~Cd~C~~~~H~~Cl~P~--l-~~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~~~~~ 366 (566)
..+|.+|... +.+++||.|++|++.||++||... + ..++.+.|+|+.|. .|.+|
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------~C~vC-------- 67 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK---------TCSSC-------- 67 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC---------CBTTT--------
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC---------ccccc--------
Confidence 3479999764 346799999999999999999642 2 35788999999996 24333
Q ss_pred cccccccCCCCCCCCCCCCccccccccccccCcCCCCCCCCCCccccccccccCcccccCCCcccccCCccCCCcccccc
Q 008421 367 RIQINQAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHER 446 (566)
Q Consensus 367 R~~~~~~~~~~~~~~~e~~~e~E~~s~~~~~~~~~~~~e~~~s~~~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~ 446 (566)
+..... .+.|+.|+. | .+.||..
T Consensus 68 -----------------------------------------------------~~~~~~-~~~ll~Cd~--C-~~~yH~~ 90 (112)
T 3v43_A 68 -----------------------------------------------------RDQGKN-ADNMLFCDS--C-DRGFHME 90 (112)
T ss_dssp -----------------------------------------------------CCCCCT-TCCCEECTT--T-CCEECGG
T ss_pred -----------------------------------------------------cCcCCC-ccceEEcCC--C-CCeeecc
Confidence 322111 356888987 8 5789999
Q ss_pred CCCccccccCCCCccCCCcc
Q 008421 447 CLTPKQLKRYGPCWFCPSCL 466 (566)
Q Consensus 447 CL~~~~~~~~~~~w~Cp~C~ 466 (566)
||.+.........|+|+.|.
T Consensus 91 Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 91 CCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp GCSSCCSSCCSSCCCCTTTS
T ss_pred cCCCCCCCCCCCCeECCCCC
Confidence 99876555555689999883
No 19
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.23 E-value=2.6e-12 Score=101.11 Aligned_cols=48 Identities=38% Similarity=1.044 Sum_probs=44.2
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+++.|.+|+. ++.||+||+|+++||++|+.||++.+|.|.|||+.|..
T Consensus 4 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4558999997 67999999999999999999999999999999999974
No 20
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.22 E-value=2.3e-12 Score=114.25 Aligned_cols=94 Identities=26% Similarity=0.732 Sum_probs=70.4
Q ss_pred cccccccccc-------CCCCceeeccCCCCCcccccCCCCC---CCCCCCccCccccccCCCCCCcccccccccCCCCc
Q 008421 297 HTCRQCEEKA-------GEKDGLVCDSCEEMYHLSCIEPAFK---DIPPKSWYCARCTAKGFGSPHENCIVCERMNANAP 366 (566)
Q Consensus 297 ~~C~~C~~~~-------~~~~ll~Cd~C~~~~H~~Cl~P~l~---~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~~~~~ 366 (566)
+.|.+|.... ++++||.|++|++.||++|+.+++. .+|.+.|+|+.|. .|.+|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------~C~~C-------- 64 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK---------SCILC-------- 64 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC---------CCTTT--------
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC---------ccCcc--------
Confidence 3699997633 4679999999999999999987642 5788999999996 34334
Q ss_pred cccccccCCCCCCCCCCCCccccccccccccCcCCCCCCCCCCccccccccccCcccccCCCcccccCCccCCCcccccc
Q 008421 367 RIQINQAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHER 446 (566)
Q Consensus 367 R~~~~~~~~~~~~~~~e~~~e~E~~s~~~~~~~~~~~~e~~~s~~~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~ 446 (566)
+.... ++.|+.|+. | .+.||..
T Consensus 65 -----------------------------------------------------~~~~~--~~~ll~Cd~--C-~~~yH~~ 86 (114)
T 2kwj_A 65 -----------------------------------------------------GTSEN--DDQLLFCDD--C-DRGYHMY 86 (114)
T ss_dssp -----------------------------------------------------TCCTT--TTTEEECSS--S-CCEEETT
T ss_pred -----------------------------------------------------cccCC--CCceEEcCC--C-Ccccccc
Confidence 22211 456889986 8 5789999
Q ss_pred CCCccccccCCCCccCCCc
Q 008421 447 CLTPKQLKRYGPCWFCPSC 465 (566)
Q Consensus 447 CL~~~~~~~~~~~w~Cp~C 465 (566)
||.+.........|+|+.|
T Consensus 87 Cl~ppl~~~P~g~W~C~~C 105 (114)
T 2kwj_A 87 CLNPPVAEPPEGSWSCHLC 105 (114)
T ss_dssp TSSSCCSSCCSSCCCCHHH
T ss_pred ccCCCccCCCCCCeECccc
Confidence 9997554444568999987
No 21
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.19 E-value=6.8e-12 Score=122.93 Aligned_cols=56 Identities=41% Similarity=1.133 Sum_probs=48.8
Q ss_pred CCccCCCcccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCC-CcccCCCcc
Q 008421 458 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCDA 513 (566)
Q Consensus 458 ~~w~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~-~W~C~~C~~ 513 (566)
..|.|..|.|.+|+...+++.||+||.|+++||++||+|||..+|.| .|+|+.|..
T Consensus 168 ~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 168 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred cCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 46999999999999988899999999999999999999999999999 999999964
No 22
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.19 E-value=4.1e-12 Score=96.56 Aligned_cols=48 Identities=35% Similarity=1.149 Sum_probs=44.6
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+..++++.||.||.|+++||++|+.||+..+|.++|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478898888888999999999999999999999999999999999974
No 23
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.18 E-value=7.8e-12 Score=103.18 Aligned_cols=54 Identities=28% Similarity=0.986 Sum_probs=48.4
Q ss_pred CCcCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCC-ccCccccc
Q 008421 292 DVYKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKS-WYCARCTA 345 (566)
Q Consensus 292 ~~~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~-W~C~~C~~ 345 (566)
+.-.+..|.+|++.++++.||+||+|+++||++|+.|||..+|+|+ |||+.|.+
T Consensus 22 W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 22 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3444668999999888899999999999999999999999999999 99999974
No 24
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=6.7e-12 Score=107.17 Aligned_cols=56 Identities=36% Similarity=1.016 Sum_probs=51.3
Q ss_pred CCccCCCc-ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 458 PCWFCPSC-LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 458 ~~w~Cp~C-~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
..|.|..+ .|.+|+..++.+.||+||.|+++||++|+.|||..+|.++|+|+.|..
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred chhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 46888888 799999887788999999999999999999999999999999999963
No 25
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.16 E-value=5.2e-12 Score=101.08 Aligned_cols=54 Identities=26% Similarity=0.732 Sum_probs=46.2
Q ss_pred cCcccccccccc--cCCCCceeeccCCCCCcccccCCCCCC--C-CCCCccCccccccC
Q 008421 294 YKVHTCRQCEEK--AGEKDGLVCDSCEEMYHLSCIEPAFKD--I-PPKSWYCARCTAKG 347 (566)
Q Consensus 294 ~~~~~C~~C~~~--~~~~~ll~Cd~C~~~~H~~Cl~P~l~~--~-P~g~W~C~~C~~~~ 347 (566)
.++..|.+|+.. .+.+.||+||+|+++||++|+.|+++. + |+|.|||+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345689999985 346899999999999999999999987 4 99999999998544
No 26
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.15 E-value=5.3e-12 Score=106.92 Aligned_cols=51 Identities=33% Similarity=0.838 Sum_probs=44.9
Q ss_pred cccccccccccC--CCCceeeccCCCCCcccccCCCCCC----CCCCCccCcccccc
Q 008421 296 VHTCRQCEEKAG--EKDGLVCDSCEEMYHLSCIEPAFKD----IPPKSWYCARCTAK 346 (566)
Q Consensus 296 ~~~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~P~l~~----~P~g~W~C~~C~~~ 346 (566)
+.+|.+|+.... .+.||+||+|+++||++|+.|+|.. +|+|.|||+.|...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 458999998543 4789999999999999999999984 99999999999753
No 27
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=99.91 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=43.5
Q ss_pred Cccccccccccc--CCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 295 KVHTCRQCEEKA--GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 295 ~~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
+++.|.+|+..+ +++.||+||+|+++||++|+.|+ .+|+|+|||+.|...
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 455899999854 67899999999999999999887 499999999999753
No 28
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.07 E-value=3.6e-11 Score=96.35 Aligned_cols=45 Identities=31% Similarity=0.741 Sum_probs=40.7
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+ +++.||+||.|+++||++|+.|||..+|.+.|+|+.|..
T Consensus 14 ~C~vC~---~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCG---DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTS---CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCC---CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 577885 457799999999999999999999999999999999974
No 29
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.06 E-value=1e-10 Score=92.23 Aligned_cols=45 Identities=38% Similarity=1.241 Sum_probs=40.2
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+ +++.||.||.|+++||++|+.||+..+|.++|+|+.|..
T Consensus 11 ~C~vC~---~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 11 FCRVCK---DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCTTTC---CCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred cCCCCC---CCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 466774 457899999999999999999999999999999999975
No 30
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.05 E-value=7.1e-11 Score=115.77 Aligned_cols=51 Identities=29% Similarity=1.036 Sum_probs=43.3
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCC-CccCccccc
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCTA 345 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~~ 345 (566)
.++.|.+|+..++++.||+||+|+++||++|+.|||+.+|+| +|+|+.|..
T Consensus 173 ~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 173 RVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 366899999988899999999999999999999999999999 999999974
No 31
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.04 E-value=4.3e-11 Score=101.33 Aligned_cols=51 Identities=25% Similarity=0.666 Sum_probs=43.8
Q ss_pred Cccccccccccc--CCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKA--GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
+++.|.+|+..+ +++.||+||+|+.+||++|+.|++ +|+|+|||+.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 456899999854 566999999999999999998874 999999999998543
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.04 E-value=8.2e-11 Score=114.67 Aligned_cols=51 Identities=29% Similarity=0.821 Sum_probs=45.9
Q ss_pred cCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
.+++.|.+|+. +|+||+||+|+++||++|+.||+..+|.|+|+|+.|...+
T Consensus 5 ~~~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQN---GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCC---CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34568999986 6789999999999999999999999999999999998654
No 33
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.02 E-value=1.1e-10 Score=111.57 Aligned_cols=50 Identities=28% Similarity=0.832 Sum_probs=45.2
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
+++.|.+|+. +|+||+||+|+++||++|+.|++..+|.|+|+|+.|....
T Consensus 3 ~~~~C~~C~~---~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQN---GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCC---CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCC---CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4568999986 6789999999999999999999999999999999998543
No 34
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.02 E-value=2.3e-10 Score=96.48 Aligned_cols=45 Identities=36% Similarity=0.949 Sum_probs=40.5
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+. ++.||+||.|+++||++|+.||+..+|.++|+|+.|..
T Consensus 27 ~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 27 ICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cCcCcCC---CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 5777754 46799999999999999999999999999999999974
No 35
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.99 E-value=7.6e-11 Score=92.65 Aligned_cols=45 Identities=42% Similarity=1.226 Sum_probs=39.9
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+. ++.||.||.|+++||++|+.||+..+|.+.|+|+.|..
T Consensus 7 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 7 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4667754 46899999999999999999999999999999999963
No 36
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=89.90 Aligned_cols=44 Identities=43% Similarity=1.256 Sum_probs=38.9
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 512 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~ 512 (566)
.|.+|+. .+.||.||.|+++||++|+.||+..+|.+.|+|+.|.
T Consensus 11 ~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4566654 4689999999999999999999999999999999995
No 37
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.97 E-value=1.6e-10 Score=94.66 Aligned_cols=53 Identities=23% Similarity=0.730 Sum_probs=47.0
Q ss_pred cCcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
.+...|.+|+..++++.||.||+|+.+||++|+.+++..+|.++|||+.|...
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 34558999999887778999999999999999999988888899999999754
No 38
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.97 E-value=1.5e-10 Score=92.65 Aligned_cols=45 Identities=38% Similarity=1.122 Sum_probs=39.5
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+ +++.||.||.|+++||++|+.||+..+|.+.|+|+.|..
T Consensus 10 ~C~vC~---~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 10 ECAVCR---DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SBSSSS---CCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCC---CCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356664 356899999999999999999999999999999999963
No 39
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=109.14 Aligned_cols=47 Identities=36% Similarity=0.972 Sum_probs=43.5
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
+.|.+|+. +++||+||+|+++||++|+.|+++.+|.|+|+|+.|...
T Consensus 3 ~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCC---CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCC---CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 47999996 678999999999999999999999999999999999844
No 40
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=1.8e-10 Score=90.79 Aligned_cols=45 Identities=36% Similarity=1.129 Sum_probs=39.9
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+. ++.||.||.|+++||++|+.||+..+|.+.|+|+.|..
T Consensus 13 ~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 13 YCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4566654 57899999999999999999999999999999999964
No 41
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.94 E-value=3.4e-10 Score=99.62 Aligned_cols=50 Identities=32% Similarity=0.947 Sum_probs=45.4
Q ss_pred cccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 298 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 298 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
.|.+|+...+...||+||.|+++||++|+.|+++.+|+|+|||+.|....
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57888887777789999999999999999999999999999999998554
No 42
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.91 E-value=2.6e-10 Score=96.46 Aligned_cols=48 Identities=29% Similarity=0.774 Sum_probs=42.0
Q ss_pred ccccccccCC--CCceeeccCCCCCCcCCCCCCCCCC----CCCCCcccCCCcc
Q 008421 466 LCRACLTDKD--DEKIVMCDGCDQGYHLYCMDPPRTS----VPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~Ppl~~----~p~~~W~C~~C~~ 513 (566)
.|.+|+.... ++.||+||.|+++||++|+.|||.. +|.+.|+|+.|..
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 5788876644 4789999999999999999999984 8999999999964
No 43
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.84 E-value=4.2e-10 Score=89.92 Aligned_cols=48 Identities=35% Similarity=1.002 Sum_probs=41.2
Q ss_pred cccccccc--CCCCceeeccCCCCCCcCCCCCCCCCC--C-CCCCcccCCCcc
Q 008421 466 LCRACLTD--KDDEKIVMCDGCDQGYHLYCMDPPRTS--V-PKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~--~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~--~-p~~~W~C~~C~~ 513 (566)
.|.+|+.. .+++.||+||.|+++||++|+.||+.. + |.+.|+|+.|..
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 57788765 346899999999999999999999876 4 899999999964
No 44
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.80 E-value=2.7e-09 Score=91.99 Aligned_cols=45 Identities=29% Similarity=0.763 Sum_probs=38.5
Q ss_pred cccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 469 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
+|+...+++.||+||.|+.+||+.|+.|++..+|. .|+|+.|...
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 35555677899999999999999999999888874 7999999754
No 45
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.79 E-value=5.3e-10 Score=90.83 Aligned_cols=46 Identities=33% Similarity=0.998 Sum_probs=40.4
Q ss_pred ccccccccC--CCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+..+ +++.||+||.|+.+||++|+.|| .+|.++|+|+.|..
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcC
Confidence 578887654 67899999999999999999997 48999999999964
No 46
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.76 E-value=4.7e-09 Score=90.50 Aligned_cols=49 Identities=24% Similarity=0.699 Sum_probs=43.2
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
..| +|+...+++.||.||.|+.+||+.|+.|++..+|+ .|+|+.|....
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCC
Confidence 457 79988888999999999999999999999988886 79999997543
No 47
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.73 E-value=6.4e-09 Score=84.43 Aligned_cols=49 Identities=27% Similarity=0.886 Sum_probs=41.1
Q ss_pred CcccccccccccCCCCceeecc--CC-CCCcccccCCCCCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
+...| +|++..+ +.||.||. |+ .+||+.|+ +|+.+|.|.||||.|....
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCccc
Confidence 34578 7998664 68999999 77 79999999 6889999999999998543
No 48
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.73 E-value=1.1e-09 Score=89.81 Aligned_cols=48 Identities=31% Similarity=0.825 Sum_probs=42.0
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|++..+++.||+||.|+.+||+.|+.+++..+|.+.|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 356677777777899999999999999999998888889999999964
No 49
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.70 E-value=3e-09 Score=83.54 Aligned_cols=46 Identities=28% Similarity=0.923 Sum_probs=39.3
Q ss_pred cccccccccccCCCCceeecc--CC-CCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
...| +|++.++ +.||.||+ |. .+||+.|+ +|+.+|.|.||||.|..
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccC
Confidence 3468 8998764 68999999 55 89999999 68999999999999974
No 50
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.69 E-value=7e-09 Score=99.11 Aligned_cols=45 Identities=31% Similarity=0.944 Sum_probs=40.1
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+ +++.+|+||.|+++||++|+.||+..+|.+.|+|+.|..
T Consensus 6 ~C~~C~---~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 6 WCAVCQ---NGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp SCTTTC---CCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred ccccCC---CCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 366774 457799999999999999999999999999999999975
No 51
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.69 E-value=5.8e-09 Score=88.34 Aligned_cols=46 Identities=28% Similarity=0.806 Sum_probs=39.1
Q ss_pred cccccccccccCCCCceeeccCC---CCCcccccCCCCCCCCCCCccCcc-ccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCE---EMYHLSCIEPAFKDIPPKSWYCAR-CTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~-C~~ 345 (566)
...| +|+..++ +.||.||.|+ .+||+.|+ +|+.+|.|.|||+. |..
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcc
Confidence 3478 8998654 4799999977 89999999 78899999999999 973
No 52
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.68 E-value=1.8e-09 Score=91.27 Aligned_cols=46 Identities=33% Similarity=0.999 Sum_probs=39.7
Q ss_pred ccccccccC--CCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+..+ +++.||+||.|+.+||++|+.||+ +|.+.|+|+.|..
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 567787654 567999999999999999999984 8999999999964
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.67 E-value=7.1e-09 Score=100.94 Aligned_cols=45 Identities=31% Similarity=0.930 Sum_probs=40.0
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+ +++.||+||.|+++||++|+.||+..+|.|.|+|+.|..
T Consensus 9 ~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 9 WCAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SBTTTC---CCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCC---CCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 466674 456799999999999999999999999999999999975
No 54
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=98.45 Aligned_cols=46 Identities=35% Similarity=0.899 Sum_probs=41.0
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
.|.+|+ +++.+|+||.|+++||++|+.||+..+|.|.|+|+.|...
T Consensus 4 ~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTC---CCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred cCccCC---CCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 477785 4567999999999999999999999999999999999753
No 55
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.66 E-value=4.8e-09 Score=82.10 Aligned_cols=46 Identities=28% Similarity=0.904 Sum_probs=39.4
Q ss_pred cccccccccccCCCCceeecc--CC-CCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
...| +|++.++ +.|+.||. |+ .+||+.|+ +|+..|.|+||||.|..
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccC
Confidence 3468 8998664 68999999 77 79999999 68899999999999974
No 56
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.64 E-value=2.3e-08 Score=84.89 Aligned_cols=50 Identities=26% Similarity=0.859 Sum_probs=41.5
Q ss_pred cCcccccccccccCCCCceeecc--CC-CCCcccccCCCCCCCCCCCccCccccccC
Q 008421 294 YKVHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 294 ~~~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
.+...| +|++..+ +.||.||. |+ .+||+.|+ +|+.+|.+.|||+.|....
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcC
Confidence 344578 9998664 68999999 66 79999999 6889999999999998544
No 57
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.60 E-value=1e-08 Score=81.08 Aligned_cols=47 Identities=30% Similarity=0.898 Sum_probs=39.4
Q ss_pred cccccccccccCCCCceeecc--CC-CCCcccccCCCCCCCCCCCccCcccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
...| +|++.++ +.|+.||. |. .+||+.|+ +|+..|.|.||||.|..+
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHTC
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCcccC
Confidence 3468 8998654 58999999 55 99999999 688889999999999753
No 58
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.49 E-value=1.9e-08 Score=92.11 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=43.6
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCC-----C--CCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFK-----D--IPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~-----~--~P~g~W~C~~C~~~~ 347 (566)
.++.|.+|+. +|+|++||.|+++||+.|+.|++. + .|.|+|+|+.|....
T Consensus 62 ~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 62 MDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp CBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 4568999987 899999999999999999999986 2 589999999998543
No 59
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=98.47 E-value=1.3e-07 Score=84.17 Aligned_cols=95 Identities=19% Similarity=0.406 Sum_probs=73.8
Q ss_pred ccchHHHHHHHHHHHhhhh------HHHHHHhh---hccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEK------FTLLCKVL---LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 232 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~------f~~~~~~l---~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~k 232 (566)
..-...|..+|..++..+. |..+.+.. ...|... |.+||||+||..||.+|.| .++.+|..||++||.|
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREY-RDAQEFGADVRLMFSN 85 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHH
Confidence 3445679988888876543 44444432 2445566 8999999999999999988 6899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhhhhHhhh
Q 008421 233 FQEI---GAEIITLAKKLSELSQASYIEH 258 (566)
Q Consensus 233 l~~~---g~ev~~LA~~Ls~i~~~~~~~~ 258 (566)
...| +..+...|..|...|...+.+.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 8887 5788999999998866655443
No 60
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=98.44 E-value=1.2e-07 Score=85.70 Aligned_cols=92 Identities=17% Similarity=0.402 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHhhhh--HHHHHHhh-------hccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHH
Q 008421 164 NTDMCQRAFLEIITSEK--FTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 234 (566)
Q Consensus 164 ~~~~c~~~l~~~l~se~--f~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~ 234 (566)
....|..+|..++..+. ++.++... ...|... |.+||||+||..||.+|.| .++.+|..||++||.|..
T Consensus 23 ~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 23 QLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREY-RDAQEFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHH
Confidence 34569988888876543 34444332 2334455 8999999999999999988 689999999999999988
Q ss_pred HH---hHHHHHHHHHhhhhhhhhHhh
Q 008421 235 EI---GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 235 ~~---g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
.| +..+...|..|..+|...+.+
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 126 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAK 126 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87 568999999999987766554
No 61
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=98.40 E-value=2.8e-07 Score=83.85 Aligned_cols=96 Identities=19% Similarity=0.369 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHhhhhHHHHHH----hhhccCCCCccCCccchhhhhhhhccc-cccCcchhhhhhHHHHHHHHHHH--
Q 008421 164 NTDMCQRAFLEIITSEKFTLLCK----VLLGNFQGIKVDRVFNLSAINSRMKQG-AYENSPMQFMADVQQVWKKFQEI-- 236 (566)
Q Consensus 164 ~~~~c~~~l~~~l~se~f~~~~~----~l~~~~~~~~~~~~~Dl~~Id~rl~~g-~Y~~~p~~f~~DV~~vW~kl~~~-- 236 (566)
....|..+|..+...+ ++.++. .....|... |.+||||+||..||.++ -+|.++.+|..||++||.|...|
T Consensus 21 ~~~~c~~il~~L~~~~-~s~~F~~Pv~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 98 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHE-MSLAFQDPVPLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNE 98 (135)
T ss_dssp HHHHHHHHHHHHHTSG-GGGGGSSCCCTTSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCc-cchhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4567988888776654 444433 222334445 89999999999999996 35689999999999999998887
Q ss_pred -hHHHHHHHHHhhhhhhhhHhhhcCC
Q 008421 237 -GAEIITLAKKLSELSQASYIEHVGG 261 (566)
Q Consensus 237 -g~ev~~LA~~Ls~i~~~~~~~~~~~ 261 (566)
+..+...|..|..+|...+.+....
T Consensus 99 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 99 PDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999988888777644
No 62
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=98.37 E-value=2.9e-07 Score=81.56 Aligned_cols=96 Identities=14% Similarity=0.311 Sum_probs=75.3
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
......|..+|..+...+ ++.++..+. ..|... |.+||||++|..||.+|.| .++.+|..|+.+||.|...|
T Consensus 12 ~~~~~~c~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHE-DAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQY-PNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp TTHHHHHHHHHHHHHTST-TCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 345677988877777654 444444333 234455 8999999999999999988 68999999999999998887
Q ss_pred ---hHHHHHHHHHhhhhhhhhHhhhcC
Q 008421 237 ---GAEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 237 ---g~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
+..+...|..|...|+..+.+.+.
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 568999999999998887776553
No 63
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3.5e-07 Score=81.81 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=72.3
Q ss_pred ccchHHHHHHHHHHHhhhh-----HHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEK-----FTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWK 231 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~-----f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~ 231 (566)
+..+..|..+|..++..+. ++.++..+. ..|... |.+||||+||..||.+|.| .++++|..|+++||.
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKY-RSLGDLEKDVMLLCH 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCC-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Confidence 6677889988888876531 333333222 234445 8999999999999999977 789999999999999
Q ss_pred HHHHH---hHHHHHHHHHhhhhhhhhHhh
Q 008421 232 KFQEI---GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 232 kl~~~---g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
|...| +..+...|..|..+|...+.+
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 118 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQS 118 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98887 567999999999887765543
No 64
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=98.37 E-value=2.8e-07 Score=86.09 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=72.6
Q ss_pred ccchHHHHHHHHHHHhh--------hhHHHHHHh-hhccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITS--------EKFTLLCKV-LLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 232 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~s--------e~f~~~~~~-l~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~k 232 (566)
+.-...|..+|..|+.. ..|..+.+. ....|... |.+||||+||..||.+|.| .++.+|..||++||.|
T Consensus 24 ~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~N 101 (158)
T 3uv4_A 24 DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKY-QSRESFLDDVNLILAN 101 (158)
T ss_dssp SHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH
Confidence 55566788888888764 234433332 12334455 8999999999999999987 7899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhhhhHhhhc
Q 008421 233 FQEI---GAEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 233 l~~~---g~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
...| +..+...|..|...+...+.+..
T Consensus 102 a~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 102 SVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 46788899999888776665543
No 65
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=98.37 E-value=4e-07 Score=80.56 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHhhh-----hHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHH
Q 008421 164 NTDMCQRAFLEIITSE-----KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKF 233 (566)
Q Consensus 164 ~~~~c~~~l~~~l~se-----~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl 233 (566)
-++.|..+|..+.... .++.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.|.
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEY-DDVNLLTADFQLLFNNA 83 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHH
Confidence 3567887777776542 2333333222 234445 8999999999999999987 78999999999999998
Q ss_pred HHH---hHHHHHHHHHhhhhhhhhHhhhcC
Q 008421 234 QEI---GAEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 234 ~~~---g~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
..| +..+...|..|..+|...+.+.+.
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 578999999999999888887764
No 66
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=98.36 E-value=4e-07 Score=82.16 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=76.1
Q ss_pred ccchHHHHHHHHHHHhhh------hHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSE------KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVW 230 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se------~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW 230 (566)
...+..|+.+|..++..+ .++.++..+. ..|... |.+||||+||..||.+|.| .++.+|..||++||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKY-RSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Confidence 556788998888888643 2344444322 234445 8999999999999999977 78999999999999
Q ss_pred HHHHHH---hHHHHHHHHHhhhhhhhhHhhhcC
Q 008421 231 KKFQEI---GAEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 231 ~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
.|...| +..+...|..|..+|...+.+...
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 998887 567999999999998887766553
No 67
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=98.32 E-value=5.5e-07 Score=79.16 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=70.1
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
+.....|..+|..+...+ .+.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|
T Consensus 6 ~~l~~~~~~il~~l~~~~-~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHP-SAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYY-VTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHSG-GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCC-cCHHHHHHHHHHHHHHHHHH
Confidence 344566887776666544 444444333 223345 8999999999999999977 78999999999999998887
Q ss_pred ---hHHHHHHHHHhhhhhhhhHhh
Q 008421 237 ---GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 237 ---g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
+..+...|..|...+...+.+
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~ 106 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKE 106 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999887765543
No 68
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=98.32 E-value=4.5e-07 Score=80.15 Aligned_cols=92 Identities=10% Similarity=0.243 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
+.....|..+|..+...+ .+.++..+. ..|... |.+||||+||..||.+|.| .++.+|..||.+||.|...|
T Consensus 15 ~~~~~~~~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 91 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHK-DSWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLY-CTKEEFVNDMKTMFRNCRKY 91 (116)
T ss_dssp CCHHHHHHHHHHHHHHST-TCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CcHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 445667887777766554 333333222 234455 8999999999999999988 78999999999999998877
Q ss_pred ---hHHHHHHHHHhhhhhhhhHh
Q 008421 237 ---GAEIITLAKKLSELSQASYI 256 (566)
Q Consensus 237 ---g~ev~~LA~~Ls~i~~~~~~ 256 (566)
+.++...|..|...|...+.
T Consensus 92 N~~~s~~~~~A~~L~~~f~~~~~ 114 (116)
T 3nxb_A 92 NGESSEYTKMSDNLERCFHRAMM 114 (116)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 56899999999998776554
No 69
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=98.31 E-value=5.8e-07 Score=84.56 Aligned_cols=94 Identities=16% Similarity=0.291 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhh-------hccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 234 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~ 234 (566)
+.-...|..+|..+...+ .+.++..+ ...|... |.+||||+||..||.+|.| .++.+|..||++||.|..
T Consensus 20 ~~~~~~~~~il~~L~~~~-~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y-~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYE-GGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQY-AYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp HHHHHHHHHHHHHHTTST-TGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHH
Confidence 556677888887777654 33333322 3345566 8999999999999999988 689999999999999988
Q ss_pred HH---hHHHHHHHHHhhhhhhhhHhhh
Q 008421 235 EI---GAEIITLAKKLSELSQASYIEH 258 (566)
Q Consensus 235 ~~---g~ev~~LA~~Ls~i~~~~~~~~ 258 (566)
.| +..+...|..|..+|...+.+.
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 87 5789999999999988766554
No 70
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=98.28 E-value=6.7e-07 Score=80.06 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHHHhh---------hhHHHHHHhh-hccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHH
Q 008421 163 TNTDMCQRAFLEIITS---------EKFTLLCKVL-LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 232 (566)
Q Consensus 163 ~~~~~c~~~l~~~l~s---------e~f~~~~~~l-~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~k 232 (566)
.....|..+|..+..- ..|..+.... ...|... |.+||||+||..||.+|.| .++.+|..|+++||.|
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKY-QDIDSMVEDFVMMFNN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH
Confidence 4456687777666652 3343332211 1234455 8999999999999999988 7899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhhhhHhhhc
Q 008421 233 FQEI---GAEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 233 l~~~---g~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
...| +..+...|..|..++...+.+..
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8887 57899999999998887666543
No 71
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=98.27 E-value=7e-07 Score=79.31 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhh-------hccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 234 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~ 234 (566)
+.....|..+|..++..+..+.++... ...|... +.+||||+||..||.+|.| .++.+|..||.+||.|..
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQY-QEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHH
Confidence 344556777777777756555544432 2345555 8999999999999999987 789999999999999988
Q ss_pred HH---hHHHHHHHHHhhhhhhhhHhhh
Q 008421 235 EI---GAEIITLAKKLSELSQASYIEH 258 (566)
Q Consensus 235 ~~---g~ev~~LA~~Ls~i~~~~~~~~ 258 (566)
.| +..+...|..|...+...+.+.
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 87 5678999999999887766554
No 72
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=98.27 E-value=6.9e-07 Score=79.69 Aligned_cols=92 Identities=12% Similarity=0.214 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH-
Q 008421 163 TNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI- 236 (566)
Q Consensus 163 ~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~- 236 (566)
.....|..+|..+...+ ++.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|
T Consensus 13 ~~~~~~~~il~~l~~~~-~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN 89 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHA-AAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKY-QKMEDFIYDARLVFNNCRMYN 89 (121)
T ss_dssp TTHHHHHHHHHHHHHST-TCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCC-CchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHC
Confidence 34567998887777654 444443332 234445 8999999999999999988 68999999999999998887
Q ss_pred --hHHHHHHHHHhhhhhhhhHhh
Q 008421 237 --GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 237 --g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
+..+...|..|...+...+.+
T Consensus 90 ~~~s~i~~~A~~L~~~f~~~~~~ 112 (121)
T 1e6i_A 90 GENTSYYKYANRLEKFFNNKVKE 112 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 567888999999887665543
No 73
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=98.27 E-value=6.1e-07 Score=79.66 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhh---hHHHHHHh-hhccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hH
Q 008421 166 DMCQRAFLEIITSE---KFTLLCKV-LLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GA 238 (566)
Q Consensus 166 ~~c~~~l~~~l~se---~f~~~~~~-l~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ 238 (566)
..|..+|..+...+ .|..+.+- ....|... |.+||||+||..||.+|.| .++.+|..|+++||.|...| +.
T Consensus 11 ~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Li~~Na~~yN~~~s 88 (117)
T 2i7k_A 11 EALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDY-QSIEELKDNFKLMCTNAMIYNKPET 88 (117)
T ss_dssp HHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSC-CSHHHHHHHHHHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHhCcccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 44665555555443 23333321 12234445 8999999999999999988 68999999999999999987 46
Q ss_pred HHHHHHHHhhhhhhhhHhhhcC
Q 008421 239 EIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 239 ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
.+...|..|...+...+..++.
T Consensus 89 ~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 89 IYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998887777664
No 74
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.26 E-value=2.9e-07 Score=80.43 Aligned_cols=43 Identities=40% Similarity=0.956 Sum_probs=37.1
Q ss_pred ccccccccCCCCceeecc--CCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.|.+|+ +++.||.|| .|+++||++|+. |..+|.|+|+||.|..
T Consensus 17 ~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 17 YCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SCTTTC---CCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCcCC---CCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 456664 567899999 899999999998 7899999999998864
No 75
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=98.24 E-value=1.1e-06 Score=78.55 Aligned_cols=96 Identities=16% Similarity=0.363 Sum_probs=74.8
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
+.....|..+|..+...+. +.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+.+||.|...|
T Consensus 9 ~~~~~~c~~il~~l~~~~~-s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCED-SEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNY-DSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGG-GGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 5667789988877777553 33333222 234455 8999999999999999987 78999999999999998887
Q ss_pred ----hHHHHHHHHHhhhhhhhhHhhhcC
Q 008421 237 ----GAEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 237 ----g~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
+..+...|..|..+|...+.+...
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~ 113 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISS 113 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999998887777664
No 76
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=98.23 E-value=6.3e-07 Score=79.76 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=70.0
Q ss_pred ccchHHHHHHHHHHHhhh---------hHHHHHH-hhhccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSE---------KFTLLCK-VLLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWK 231 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se---------~f~~~~~-~l~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~ 231 (566)
+.....|+.+|..|+... .|..+.. .....|... |.+||||++|..||.+|.| .++.+|..||++||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSY-KSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCC-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHH
Confidence 455667777777666542 3332222 111234455 8999999999999999987 789999999999999
Q ss_pred HHHHH---hHHHHHHHHHhhhhhhhhHhh
Q 008421 232 KFQEI---GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 232 kl~~~---g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
|...| +..+...|..|..+|...+.+
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98887 567999999999987766554
No 77
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=98.23 E-value=8.7e-07 Score=82.38 Aligned_cols=90 Identities=11% Similarity=0.269 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhHHHHHHhhh-------ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---h
Q 008421 168 CQRAFLEIITSEKFTLLCKVLL-------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---G 237 (566)
Q Consensus 168 c~~~l~~~l~se~f~~~~~~l~-------~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g 237 (566)
|...++..|....++.++.... ..|... |.+||||+||..||.+|.| .++.+|..||.+||.|...| +
T Consensus 36 ~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~Na~~YN~~~ 113 (154)
T 4alg_A 36 LHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYY-WAASECMQDFNTMFTNCYIYNKPT 113 (154)
T ss_dssp HHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3334444455555666665333 234455 8999999999999999987 68999999999999998887 5
Q ss_pred HHHHHHHHHhhhhhhhhHhhhc
Q 008421 238 AEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 238 ~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
..+...|..|..+|...+.+.-
T Consensus 114 s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 114 DDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHCC
Confidence 7899999999998776665544
No 78
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=98.22 E-value=1.3e-06 Score=79.27 Aligned_cols=96 Identities=16% Similarity=0.350 Sum_probs=75.2
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhhhc-----cCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVLLG-----NFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l~~-----~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
......|..+|..+...+ .+.++..+.+ .|... |.+||||+||..||.+|.| .++.+|..||.+||.|...|
T Consensus 20 ~~l~~~~~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCE-DSEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNY-ESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp STHHHHHHHHHHHHHHSG-GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 566778987777776654 4444443332 34455 8999999999999999988 68999999999999998887
Q ss_pred ----hHHHHHHHHHhhhhhhhhHhhhcC
Q 008421 237 ----GAEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 237 ----g~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
+..+...|..|..+|...+.+.+.
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999998887777653
No 79
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=3.4e-07 Score=74.00 Aligned_cols=45 Identities=31% Similarity=0.897 Sum_probs=37.6
Q ss_pred cccccccccCCCCceeeccCC---CCCcccccCCCCCCCCCCCccCcccccc
Q 008421 298 TCRQCEEKAGEKDGLVCDSCE---EMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 298 ~C~~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
+|. |+..++ +.||.||.|+ .+||+.|+ +|+..|.+.|||+.|...
T Consensus 8 yC~-C~~~~~-g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 8 YCI-CNQVSY-GEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CST-TSCCCC-SSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHHH
T ss_pred EEE-cCCCCC-CCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCcc
Confidence 574 887654 4899999985 89999999 678889999999999743
No 80
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.20 E-value=8e-07 Score=72.03 Aligned_cols=42 Identities=31% Similarity=0.950 Sum_probs=34.7
Q ss_pred cccccCCCCceeeccC--CC-CCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++... +.||.||. |+ .+||+.|+. |...|.+.|+|+.|..
T Consensus 20 ~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 20 LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCc
Confidence 4665443 68999999 77 699999998 5788899999999975
No 81
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=98.18 E-value=1.5e-06 Score=77.99 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhhc
Q 008421 192 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 192 ~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
|... +.+||||+||..||.+|.| .++.+|..|+.+||.|...| +..+...|..|..+|.....+..
T Consensus 48 Y~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 48 YYEK-ISDPLDLITIEKQILTGYY-KTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHHH-CSSCCCHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 8999999999999999987 78999999999999998887 56889999999998877666544
No 82
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=1e-06 Score=78.65 Aligned_cols=90 Identities=8% Similarity=0.100 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---
Q 008421 165 TDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 236 (566)
Q Consensus 165 ~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~--- 236 (566)
...|+.+|..+...+ .+.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|
T Consensus 9 ~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 9 LILLRKTLEQLQEKD-TGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRY-LNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp HHHHHHHHHHHHHHC-SSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHcCC-ccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 456887777766543 333333222 234445 8999999999999999988 68999999999999998887
Q ss_pred hHHHHHHHHHhhhhhhhhHhh
Q 008421 237 GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 237 g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
+..+...|..|...+...+.+
T Consensus 86 ~s~~~~~A~~L~~~~~~~l~~ 106 (121)
T 2d9e_A 86 DTIFYRAAVRLREQGGAVLRQ 106 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 467888999998887766554
No 83
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.17 E-value=8.3e-07 Score=71.32 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=40.4
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+...| +|+...+++.||.||.|..+||..|+......+| +.|+|+.|..
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 34468 9999888778999999999999999976555555 5799999974
No 84
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=98.17 E-value=1.6e-06 Score=80.01 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhhcCCCC
Q 008421 192 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVGGSA 263 (566)
Q Consensus 192 ~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~~~~~ 263 (566)
|... |.+||||+||..||.+|.| .++.+|..||.+||.|...| +..+...|..|..++...+.+....+.
T Consensus 64 Y~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 64 YYKI-ILEPMDLKIIEHNIRNDKY-AGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHH-hCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 4444 8999999999999999988 78999999999999998887 578999999999998888877765543
No 85
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=98.17 E-value=1.4e-06 Score=78.34 Aligned_cols=63 Identities=16% Similarity=0.337 Sum_probs=54.3
Q ss_pred CCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHh
Q 008421 192 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYI 256 (566)
Q Consensus 192 ~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~ 256 (566)
|... |.+||||+||..||.+|.| .++.+|..|+++||.|...| +..+...|..|...|...+.
T Consensus 56 Y~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~ 121 (127)
T 2oss_A 56 YYKI-IKTPMDMGTIKKRLENNYY-WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121 (127)
T ss_dssp HHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4445 8999999999999999987 68999999999999998887 57889999999988665444
No 86
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=98.16 E-value=1.4e-06 Score=78.71 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=71.4
Q ss_pred ccchHHHHHHHHHHHhhh-----hHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSE-----KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWK 231 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se-----~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~ 231 (566)
...+.+|...|..|..-. .++.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~i-Ik~PMdL~tI~~kL~~~~Y-~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ-IKMPISLQQIRTKLKNQEY-ETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHH
Confidence 556667775555554421 1233332222 223444 8999999999999999987 789999999999999
Q ss_pred HHHHH---hHHHHHHHHHhhhhhhhhHhhhcC
Q 008421 232 KFQEI---GAEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 232 kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
|...| +..+...|..|..+|...+.+...
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 98887 568999999999998887777653
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.15 E-value=1.4e-07 Score=84.90 Aligned_cols=50 Identities=28% Similarity=0.719 Sum_probs=42.5
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCC-----CCC--CCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAF-----KDI--PPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l-----~~~--P~g~W~C~~C~~~~ 347 (566)
.++.|.+|+. +++|++||.|+++||..|+.|++ .++ |.++|+|..|..+.
T Consensus 56 ~~~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 4557999986 89999999999999999999874 344 88999999997543
No 88
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.15 E-value=1.3e-06 Score=82.34 Aligned_cols=90 Identities=11% Similarity=0.256 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH--
Q 008421 164 NTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 236 (566)
Q Consensus 164 ~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~-- 236 (566)
....|+.+|..+...+ .+.++..+. ..|... |.+||||+||..||.+|.| .++.+|..||++||.|...|
T Consensus 73 ~~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 73 DYEGLKRVLRSLQAHK-MAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYY-EKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHHTSG-GGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-CBHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhh-hhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 4456887777776654 344443322 234445 8999999999999999987 78999999999999998887
Q ss_pred -hHHHHHHHHHhhhhhhhhHh
Q 008421 237 -GAEIITLAKKLSELSQASYI 256 (566)
Q Consensus 237 -g~ev~~LA~~Ls~i~~~~~~ 256 (566)
+..+...|..|..+|...+.
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~ 170 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLK 170 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 46788899999988665443
No 89
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.14 E-value=3.4e-07 Score=71.76 Aligned_cols=42 Identities=31% Similarity=0.950 Sum_probs=34.7
Q ss_pred cccccCCCCceeeccC--CC-CCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++.. .+.||.||. |+ .+||+.|+. |..+|.+.|+|+.|..
T Consensus 14 ~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 14 LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 566654 368999999 65 799999998 5788999999999963
No 90
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.13 E-value=4.5e-07 Score=76.75 Aligned_cols=41 Identities=32% Similarity=0.805 Sum_probs=33.2
Q ss_pred cccccCCCCceeeccCCC---CCCcCCCCCCCCCCCCCCCcccCC-Cc
Q 008421 469 ACLTDKDDEKIVMCDGCD---QGYHLYCMDPPRTSVPKGNWFCRK-CD 512 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~Ppl~~~p~~~W~C~~-C~ 512 (566)
+|+.... +.||.||.|+ .+||+.|+. |...|.+.|+|+. |.
T Consensus 30 iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 30 FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 4555433 4799999976 899999998 4678889999999 96
No 91
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.12 E-value=1.5e-06 Score=73.67 Aligned_cols=42 Identities=31% Similarity=0.950 Sum_probs=34.3
Q ss_pred cccccCCCCceeeccC--CC-CCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++.. .+.||.||. |+ .+||+.|+. |...|.+.|+|+.|..
T Consensus 40 iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 40 LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCC
T ss_pred ECCCCC-CCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccC
Confidence 555544 367999999 77 799999998 4678889999999975
No 92
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=98.11 E-value=1.8e-06 Score=78.27 Aligned_cols=95 Identities=7% Similarity=0.138 Sum_probs=71.5
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 162 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 162 ~~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
......|+.+|..+...+ .+.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|
T Consensus 12 ~~l~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGY-KNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CHHHHHHHHHHHHHHHTC-TTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 445667887777766644 333333222 234455 8999999999999999987 78999999999999998887
Q ss_pred ---hHHHHHHHHHhhhhhhhhHhhhc
Q 008421 237 ---GAEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 237 ---g~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
+..+...|..|...+...+.+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQAR 114 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999988777666543
No 93
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.08 E-value=5.1e-07 Score=70.55 Aligned_cols=42 Identities=36% Similarity=0.954 Sum_probs=34.6
Q ss_pred cccccCCCCceeeccC--CC-CCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++.. .+.||.||. |+ .+||+.|+. +...|.+.|+||.|..
T Consensus 13 ~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 13 LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 566654 468999999 77 699999998 5778889999999963
No 94
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=7.5e-06 Score=74.03 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHHh-------
Q 008421 165 TDMCQRAFLEIITSEKFTLLCKVLLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIG------- 237 (566)
Q Consensus 165 ~~~c~~~l~~~l~se~f~~~~~~l~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~g------- 237 (566)
...|+.+|..+...+. +.++......|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|.
T Consensus 14 ~~~~~~il~~l~~~~~-~~~F~~P~pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 14 RLFLRDVTKRLATDKR-FNIFSKPVSDYLEV-IKEPMDLSTVITKIDKHNY-LTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp HHHHHHHHHHHHHSGG-GCTTSSCCSSCTTS-CSSCCCHHHHHHHHHTTCC-CSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred HHHHHHHHHHHHhCcc-chhhcCcCccHHhH-cCCCcCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 3457766666665443 33333336667777 9999999999999999987 689999999999999988873
Q ss_pred HHHHHHHHHhhhhhhhhHhhhcC
Q 008421 238 AEIITLAKKLSELSQASYIEHVG 260 (566)
Q Consensus 238 ~ev~~LA~~Ls~i~~~~~~~~~~ 260 (566)
..|...|..|...+.......+.
T Consensus 91 ~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 91 KIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566777777776655544443
No 95
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=98.07 E-value=2.1e-06 Score=76.75 Aligned_cols=90 Identities=12% Similarity=0.227 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHhhhh---HHHHHH-hhhccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---
Q 008421 164 NTDMCQRAFLEIITSEK---FTLLCK-VLLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 236 (566)
Q Consensus 164 ~~~~c~~~l~~~l~se~---f~~~~~-~l~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~--- 236 (566)
....|..+|..+...+. |..+.+ .....|... |.+||||+||..||.+|.| .++.+|..|+.+||.|...|
T Consensus 14 ~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEY-KSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 34557777776666543 333222 112334455 8999999999999999988 78999999999999998887
Q ss_pred hHHHHHHHHHhhhhhhhhH
Q 008421 237 GAEIITLAKKLSELSQASY 255 (566)
Q Consensus 237 g~ev~~LA~~Ls~i~~~~~ 255 (566)
+..+...|..|...+....
T Consensus 92 ~s~~~~~A~~L~~~~~~~~ 110 (123)
T 3hme_A 92 DTVYYKLAKKILHAGFKMM 110 (123)
T ss_dssp TSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678888888887765543
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.06 E-value=7.7e-07 Score=81.44 Aligned_cols=46 Identities=22% Similarity=0.702 Sum_probs=39.5
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCC-----C--CCCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRT-----S--VPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~-----~--~p~~~W~C~~C~~~ 514 (566)
.|.+| .+++.+++||.|+++||+.|+.||+. . .|.++|.|+.|...
T Consensus 65 ~C~vC---~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 65 QCRWC---AEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCSSS---CCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred eeccc---CCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 56777 56789999999999999999999886 2 58999999999853
No 97
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.98 E-value=2.1e-06 Score=67.84 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=39.7
Q ss_pred cccccccccccC-CCCceeeccCCCCCcccccCCCCCCCC-CCCccCccccccC
Q 008421 296 VHTCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIP-PKSWYCARCTAKG 347 (566)
Q Consensus 296 ~~~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~~ 347 (566)
...|.+|++..+ ++.|+.||.|..+||..|+........ ...|+|+.|..+.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 347999999754 678999999999999999954333222 2679999998544
No 98
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.96 E-value=2.7e-06 Score=64.58 Aligned_cols=47 Identities=26% Similarity=0.699 Sum_probs=37.9
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
..| +|+...+++.|+.||.|...||..|+......+| +.|+|+.|..
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp BCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred eEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 345 6888877789999999999999999965544455 5799999963
No 99
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.93 E-value=1.6e-06 Score=68.34 Aligned_cols=42 Identities=33% Similarity=0.902 Sum_probs=33.9
Q ss_pred cccccCCCCceeeccC--CC-CCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++.. .+.||.||. |+ .+||+.|+.. ...|.+.|+||.|..
T Consensus 15 ~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 15 LCNQVS-YGEMIGCDNEQCPIEWFHFSCVSL--TYKPKGKWYCPKCRG 59 (62)
T ss_dssp TTTEEC-CSEEEECSCTTCSSCEEETGGGTC--SSCCSSCCCCHHHHT
T ss_pred ECCCCC-CCCeeeeeCCCCCcccEecccCCc--CcCCCCCEECcCccc
Confidence 566654 358999999 55 9999999985 577889999999963
No 100
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.89 E-value=4.1e-06 Score=68.99 Aligned_cols=49 Identities=24% Similarity=0.691 Sum_probs=39.4
Q ss_pred cccccccccccCCCCceeec--cCCCCCcccccCCCCCCCCC-------CCccCccccccC
Q 008421 296 VHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAFKDIPP-------KSWYCARCTAKG 347 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~~~ 347 (566)
...| +|+..++.+.|+.|| .|..+||..|+ +++..|. ..|||+.|....
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV--gi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEE--ccccccccccccCCCCEECCCCCccc
Confidence 3478 799987788999999 99999999999 5544432 579999998544
No 101
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.88 E-value=4.3e-06 Score=67.13 Aligned_cols=44 Identities=25% Similarity=0.691 Sum_probs=36.1
Q ss_pred cccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++..+++.||.||.|..+||..|+......+| +.|+|+.|..
T Consensus 23 iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 5666666778999999999999999998655444 6899999953
No 102
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.87 E-value=4.3e-06 Score=73.78 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=30.4
Q ss_pred CCceeeccCCCCCCcCCCCCCCCCCCCC----CCcccCCCcch
Q 008421 476 DEKIVMCDGCDQGYHLYCMDPPRTSVPK----GNWFCRKCDAG 514 (566)
Q Consensus 476 ~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~----~~W~C~~C~~~ 514 (566)
+..|+.|+.|+.+||..|+.++...++. ..|.|+.|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 4568999999999999999987654433 34999999753
No 103
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=97.86 E-value=2.1e-05 Score=70.92 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=50.8
Q ss_pred CCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHHh-------HHHHHHHHHhhhhhhhhHhh
Q 008421 192 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIG-------AEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 192 ~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~g-------~ev~~LA~~Ls~i~~~~~~~ 257 (566)
|... |.+||||+||..||.+|.| .++.+|..|+.+||.|...|. ..+...|..|...+.....+
T Consensus 43 Y~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~ 113 (130)
T 3dai_A 43 YVTV-IKQPMDLSSVISKIDLHKY-LTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKE 113 (130)
T ss_dssp HHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCCCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 8999999999999999988 789999999999999988873 23456677777665555543
No 104
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.84 E-value=5.6e-06 Score=66.36 Aligned_cols=46 Identities=26% Similarity=0.735 Sum_probs=35.8
Q ss_pred cccccccccCCCCceeecc--CCCCCcccccCCCCCCCCC------CCccCcccccc
Q 008421 298 TCRQCEEKAGEKDGLVCDS--CEEMYHLSCIEPAFKDIPP------KSWYCARCTAK 346 (566)
Q Consensus 298 ~C~~C~~~~~~~~ll~Cd~--C~~~~H~~Cl~P~l~~~P~------g~W~C~~C~~~ 346 (566)
.| +|+...+.+.|+.||+ |..+||..|+. ++..|. ..|||+.|...
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg--i~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL--IPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSC--CCSSTTSCCCCCSSCCCHHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCC--CCcccccccCCCCcEECcCccCc
Confidence 57 7998878889999995 99999999994 432222 36999999743
No 105
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.81 E-value=7e-06 Score=66.51 Aligned_cols=50 Identities=30% Similarity=0.666 Sum_probs=38.0
Q ss_pred ccccccccccCC-CCceeeccCCCCCcccccCCCCCCCCCCCccCccccccC
Q 008421 297 HTCRQCEEKAGE-KDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 297 ~~C~~C~~~~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 347 (566)
..| +|+...+. ..|+.||.|..+||..|+...........|+|+.|....
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 368 69987544 479999999999999999654322234789999998544
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.80 E-value=3.4e-06 Score=69.00 Aligned_cols=48 Identities=25% Similarity=0.708 Sum_probs=38.7
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCC-------CCCCccCccccccC
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDI-------PPKSWYCARCTAKG 347 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~-------P~g~W~C~~C~~~~ 347 (566)
..| +|++..+++.|+.||.|..+||..|+ +++.. +...|+|+.|....
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cv--gl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCV--GISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHH--SCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEE--ccchhhhhhccCCCCeEECcCCcCcc
Confidence 368 89998877899999999999999999 44432 24679999998544
No 107
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.79 E-value=5e-06 Score=72.38 Aligned_cols=49 Identities=22% Similarity=0.794 Sum_probs=39.7
Q ss_pred cccccccccc-CCCCceeec-cCCCCCcccccCCCCCC--------CCCCCccCccccccC
Q 008421 297 HTCRQCEEKA-GEKDGLVCD-SCEEMYHLSCIEPAFKD--------IPPKSWYCARCTAKG 347 (566)
Q Consensus 297 ~~C~~C~~~~-~~~~ll~Cd-~C~~~~H~~Cl~P~l~~--------~P~g~W~C~~C~~~~ 347 (566)
..|.+|++.. +.+.++.|| .|+.+||..|+ +|+. .|.+.|+||.|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccCcC
Confidence 3799999963 456789998 99999999999 5543 467899999998654
No 108
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.75 E-value=3.9e-06 Score=66.80 Aligned_cols=46 Identities=24% Similarity=0.837 Sum_probs=38.4
Q ss_pred cccccccccc-CCCCceeec-cCCCCCcccccCCCCCC--------CCCCCccCcccc
Q 008421 297 HTCRQCEEKA-GEKDGLVCD-SCEEMYHLSCIEPAFKD--------IPPKSWYCARCT 344 (566)
Q Consensus 297 ~~C~~C~~~~-~~~~ll~Cd-~C~~~~H~~Cl~P~l~~--------~P~g~W~C~~C~ 344 (566)
..|.+|++.. +...++.|| .|..+||..|+ +|+. .|.+.|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 3799999964 456789999 99999999999 5543 477899999996
No 109
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.72 E-value=5.5e-06 Score=65.44 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=35.2
Q ss_pred ccccccC-CCCceeeccCCCCCCcCCCCCCCCCCCC-CCCcccCCCcc
Q 008421 468 RACLTDK-DDEKIVMCDGCDQGYHLYCMDPPRTSVP-KGNWFCRKCDA 513 (566)
Q Consensus 468 ~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p-~~~W~C~~C~~ 513 (566)
.+|++.. +++.||+||.|+.+||..|+........ ...|+|+.|..
T Consensus 10 ~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 10 GACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3556554 3678999999999999999987544332 36899999975
No 110
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=3.6e-06 Score=67.97 Aligned_cols=41 Identities=37% Similarity=0.866 Sum_probs=32.9
Q ss_pred ccccCCCCceeeccCCC---CCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 470 CLTDKDDEKIVMCDGCD---QGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 470 C~~~~~~~~ll~Cd~C~---~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
|++.. .+.||.||.|+ .+||+.|+.. ...|.+.|+|+.|..
T Consensus 11 C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 11 CNQVS-YGEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTA 54 (70)
T ss_dssp TSCCC-CSSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHH
T ss_pred cCCCC-CCCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCc
Confidence 44443 45899999986 7999999985 567889999999964
No 111
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.66 E-value=1.1e-05 Score=61.20 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=34.8
Q ss_pred cccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCc
Q 008421 469 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 512 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~ 512 (566)
+|++..+++.||.||.|..+||..|+......+| ..|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence 3556666779999999999999999997654444 689999985
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.65 E-value=3.2e-06 Score=76.04 Aligned_cols=46 Identities=22% Similarity=0.745 Sum_probs=38.8
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCC-----CC--CCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRT-----SV--PKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~-----~~--p~~~W~C~~C~~~ 514 (566)
.|.+| .+++.+++||.|+++||..|+.|++. .+ |.++|.|+.|...
T Consensus 59 ~C~vC---~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 59 QCRWC---AEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCTTT---CCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cCeec---CCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 46777 57889999999999999999998753 43 7899999999864
No 113
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=97.65 E-value=3.8e-05 Score=77.34 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHhhh-----ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH-
Q 008421 163 TNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI- 236 (566)
Q Consensus 163 ~~~~~c~~~l~~~l~se~f~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~- 236 (566)
.....|..+|..+...+ .+.++..+. ..|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|
T Consensus 14 ~l~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 14 TLSSILESIINDMRDLP-NTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLY-PSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHTST-TCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCC-CCHHHHHHHHHHHHhhhhhcC
Confidence 45566777777776544 333333222 234455 8899999999999999987 78999999999999998887
Q ss_pred --hHHHHHHHHHhhhhhhhhHhhh
Q 008421 237 --GAEIITLAKKLSELSQASYIEH 258 (566)
Q Consensus 237 --g~ev~~LA~~Ls~i~~~~~~~~ 258 (566)
+..+...|..|..++...+.+.
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEK 114 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Confidence 5678889999998877665553
No 114
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.65 E-value=7.4e-06 Score=62.20 Aligned_cols=48 Identities=25% Similarity=0.701 Sum_probs=36.0
Q ss_pred cccccccccCC-CCceeecc-CCCCCCcCCCCCCCCCCCCCCCcccCCCc
Q 008421 465 CLCRACLTDKD-DEKIVMCD-GCDQGYHLYCMDPPRTSVPKGNWFCRKCD 512 (566)
Q Consensus 465 C~C~~C~~~~~-~~~ll~Cd-~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~ 512 (566)
|.|-+|++..+ +..||.|| .|+.+||..|+...........|+|+.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 45667777654 67899999 89999999999864332223789999984
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.65 E-value=1.4e-05 Score=64.62 Aligned_cols=45 Identities=27% Similarity=0.661 Sum_probs=34.7
Q ss_pred cccccCC-CCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 469 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
+|++..+ +..||+||.|..+||..|+...........|+|+.|..
T Consensus 20 ~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3666544 45799999999999999999764333457899999963
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.55 E-value=8.1e-06 Score=76.91 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=38.8
Q ss_pred Cccccccccccc-CCCCceeeccCCCCCcccccCCCCCC-CCCCCccCcccccc
Q 008421 295 KVHTCRQCEEKA-GEKDGLVCDSCEEMYHLSCIEPAFKD-IPPKSWYCARCTAK 346 (566)
Q Consensus 295 ~~~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g~W~C~~C~~~ 346 (566)
+...| +|+... +++.|+.||.|+.+||..|+...... .+.+.|+|+.|...
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34479 999965 46789999999999999999533221 23578999999753
No 117
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=97.54 E-value=5.3e-05 Score=76.25 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhhc
Q 008421 192 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 192 ~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
|... |.+||||+||..||.+|.| .++.+|..||.+||.|...| +..+...|..|...+...+.+..
T Consensus 170 Y~~i-Ik~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 170 YYKV-IVNPMDLETIRKNISKHKY-QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp HHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHH-hCCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 8899999999999999987 78999999999999998887 56888899999988777666544
No 118
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.51 E-value=1.5e-05 Score=65.62 Aligned_cols=49 Identities=20% Similarity=0.494 Sum_probs=37.0
Q ss_pred cccccccccC-CCCceeeccCCCCCcccccCCCCCCC-CCCCccCccccccC
Q 008421 298 TCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDI-PPKSWYCARCTAKG 347 (566)
Q Consensus 298 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~-P~g~W~C~~C~~~~ 347 (566)
.| +|+...+ .+.|+.||.|..+||..|+....... ....|+|+.|....
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 57 8998654 77899999999999999994332221 12679999998544
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.47 E-value=1.6e-05 Score=60.39 Aligned_cols=46 Identities=22% Similarity=0.678 Sum_probs=35.7
Q ss_pred ccccccccccC-CCCceeec-cCCCCCcccccCCCCCCCC--CCCccCcccc
Q 008421 297 HTCRQCEEKAG-EKDGLVCD-SCEEMYHLSCIEPAFKDIP--PKSWYCARCT 344 (566)
Q Consensus 297 ~~C~~C~~~~~-~~~ll~Cd-~C~~~~H~~Cl~P~l~~~P--~g~W~C~~C~ 344 (566)
..|.+|++..+ ++.++.|| .|+.+||..|+ +++..+ ...|+|+.|.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 35888988764 56799999 89999999999 554322 3789999984
No 120
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.47 E-value=1.3e-05 Score=69.81 Aligned_cols=49 Identities=24% Similarity=0.736 Sum_probs=36.5
Q ss_pred cccccccc-CCCCceeecc-CCCCCCcCCCCCCCCC------CCCCCCcccCCCcch
Q 008421 466 LCRACLTD-KDDEKIVMCD-GCDQGYHLYCMDPPRT------SVPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~-~~~~~ll~Cd-~C~~~~H~~Cl~Ppl~------~~p~~~W~C~~C~~~ 514 (566)
.|.+|++. .+.+.++.|| .|+.+||..|+..... ..|...|+|+.|...
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 45566665 2456799998 9999999999986421 136688999999753
No 121
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=97.43 E-value=6.6e-05 Score=76.66 Aligned_cols=88 Identities=10% Similarity=0.228 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhc-----cCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---
Q 008421 165 TDMCQRAFLEIITSEKFTLLCKVLLG-----NFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 236 (566)
Q Consensus 165 ~~~c~~~l~~~l~se~f~~~~~~l~~-----~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~--- 236 (566)
...|..+|..+...+ ++.++....+ .|... |.+||||+||..||.+|.| .++.+|..|+++||.|...|
T Consensus 49 ~~~~~~il~~l~~~~-~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 49 SSILESIINDMRDLP-NTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLY-PSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHSSST-TCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCC-cchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCc-CCHHHHHHHHHHHHHHHHHHcCC
Confidence 455776666655443 4444443332 34445 8999999999999999987 68999999999999998887
Q ss_pred hHHHHHHHHHhhhhhhhhH
Q 008421 237 GAEIITLAKKLSELSQASY 255 (566)
Q Consensus 237 g~ev~~LA~~Ls~i~~~~~ 255 (566)
+..+...|..|..++...+
T Consensus 126 ~s~i~~~A~~L~~~~~~~~ 144 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKL 144 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTG
T ss_pred chHHHHHHHHHHHHHHhhh
Confidence 4678888888887765443
No 122
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=97.41 E-value=0.00012 Score=75.44 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=55.2
Q ss_pred cCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhh
Q 008421 197 VDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEH 258 (566)
Q Consensus 197 ~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~ 258 (566)
|.+||||+||..||.+|.| .++.+|..||++||.|...| +..+...|..|..+|...+.+.
T Consensus 200 Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 200 VHSPMALSIVKQNLEIGQY-SKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp CSSCCCHHHHHHHHHHTCC-CBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCccCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988 78999999999999998887 5679999999999988777664
No 123
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=74.69 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=55.7
Q ss_pred CCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhhc
Q 008421 192 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHV 259 (566)
Q Consensus 192 ~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~ 259 (566)
|... |.+||||+||..||.+|.| .++.+|..|+++||.|...| +..+...|..|...+...+.+.-
T Consensus 203 Y~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~ 271 (292)
T 3aad_A 203 YYKV-IVNPMDLETIRKNISKHKY-QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 271 (292)
T ss_dssp HHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCcCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 8999999999999999977 78999999999999998887 46788899999888776665543
No 124
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.31 E-value=8.9e-06 Score=64.71 Aligned_cols=47 Identities=26% Similarity=0.775 Sum_probs=36.0
Q ss_pred cccccccc-CCCCceeecc-CCCCCCcCCCCCCCCC------CCCCCCcccCCCc
Q 008421 466 LCRACLTD-KDDEKIVMCD-GCDQGYHLYCMDPPRT------SVPKGNWFCRKCD 512 (566)
Q Consensus 466 ~C~~C~~~-~~~~~ll~Cd-~C~~~~H~~Cl~Ppl~------~~p~~~W~C~~C~ 512 (566)
.|.+|++. .++..+|.|| .|..+||..|+..... ..|.+.|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 45566765 3567899999 9999999999986321 2367789999985
No 125
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=97.31 E-value=0.00017 Score=75.69 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=55.0
Q ss_pred cCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhh
Q 008421 197 VDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEH 258 (566)
Q Consensus 197 ~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~ 258 (566)
|.+||||+||..||.+|.| .++.+|..||++||.|...| +..+...|..|..+|...+.+.
T Consensus 250 Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 250 VHSPMALSIVKQNLEIGQY-SKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp CSSCCCHHHHHHHHHHTCC-CBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988 78999999999999998887 5679999999999988777663
No 126
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.25 E-value=4.1e-05 Score=62.97 Aligned_cols=45 Identities=18% Similarity=0.568 Sum_probs=34.7
Q ss_pred cccccCCCCceeecc--CCCCCCcCCCCCCCCCC-----CCCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTS-----VPKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~Ppl~~-----~p~~~W~C~~C~~ 513 (566)
+|+...+.+.||.|| .|..+||..|+..+... .....|+|+.|..
T Consensus 20 iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 20 VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 466665678999999 99999999999864332 1236799999963
No 127
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.23 E-value=8.3e-05 Score=61.30 Aligned_cols=52 Identities=19% Similarity=0.529 Sum_probs=40.5
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCC------------CCCCCCCCccCccccccC
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPA------------FKDIPPKSWYCARCTAKG 347 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~------------l~~~P~g~W~C~~C~~~~ 347 (566)
+|+.|.+|..-. .+.++.|..|.+.||..||.++ +...+..-|.|+.|.+-+
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 556899998533 6789999999999999999864 333455669999997544
No 128
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.21 E-value=1.5e-05 Score=65.23 Aligned_cols=45 Identities=18% Similarity=0.598 Sum_probs=34.6
Q ss_pred cccccCCCCceeeccCCCCCCcCCCCCCCCCCC-----CCCCcccCCCcc
Q 008421 469 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSV-----PKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~-----p~~~W~C~~C~~ 513 (566)
+|++..+++.||+||.|+.+||..|+....... +...|+|+.|..
T Consensus 20 ~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 466666667899999999999999998643211 346899999963
No 129
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.15 E-value=8.4e-05 Score=60.59 Aligned_cols=48 Identities=23% Similarity=0.643 Sum_probs=36.0
Q ss_pred cccccccccC-CCCceeeccCCCCCcccccCCCCCCCCC-CCccCcccccc
Q 008421 298 TCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIPP-KSWYCARCTAK 346 (566)
Q Consensus 298 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~ 346 (566)
.| +|+...+ ++.|+.||.|..+||..|+.......+. ..|+|+.|...
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34 7888654 6789999999999999999443332332 57999999854
No 130
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.14 E-value=4.7e-05 Score=62.72 Aligned_cols=45 Identities=18% Similarity=0.514 Sum_probs=34.2
Q ss_pred cccccCC-CCceeeccCCCCCCcCCCCCCCCCCC-CCCCcccCCCcc
Q 008421 469 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSV-PKGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~-p~~~W~C~~C~~ 513 (566)
+|++..+ ++.||+||.|..+||..|+....... ....|+|+.|..
T Consensus 16 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 4555543 78999999999999999998643222 236899999975
No 131
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.02 E-value=0.00018 Score=57.47 Aligned_cols=44 Identities=20% Similarity=0.594 Sum_probs=32.6
Q ss_pred cccccCCCCceeecc--CCCCCCcCCCCCCCCCC----CCCCCcccCCCc
Q 008421 469 ACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTS----VPKGNWFCRKCD 512 (566)
Q Consensus 469 ~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~Ppl~~----~p~~~W~C~~C~ 512 (566)
+|+...+.+.||.|| .|..+||..|+...... .....|+|+.|+
T Consensus 14 ~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 14 ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 456666678999999 59999999999753211 112479999996
No 132
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=96.93 E-value=0.00066 Score=71.24 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHHhh-----hhHHHHHHh-hhccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 163 TNTDMCQRAFLEIITS-----EKFTLLCKV-LLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 163 ~~~~~c~~~l~~~l~s-----e~f~~~~~~-l~~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
.....|..+|-.++.. +.|..+... ....|... |.+||||+||..|| ..|+.++.+|..|+++||.|...|
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 3456677777665443 223222221 11234445 89999999999998 667668999999999999998888
Q ss_pred ---hHHHHHHHHHhhhhhhhhHhh
Q 008421 237 ---GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 237 ---g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
+..+...|..|..++...+.+
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k 178 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLK 178 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 578888999999887765544
No 133
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.84 E-value=0.00011 Score=59.96 Aligned_cols=45 Identities=22% Similarity=0.646 Sum_probs=34.0
Q ss_pred cccccCC-CCceeeccCCCCCCcCCCCCCCCCCCCC-CCcccCCCcc
Q 008421 469 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPK-GNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~-~~W~C~~C~~ 513 (566)
+|+...+ ++.||+||.|..+||..|+.......+. ..|+|+.|..
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3455433 6789999999999999999875443333 5799999963
No 134
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.83 E-value=0.0035 Score=59.68 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=51.1
Q ss_pred cCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhhcCCC
Q 008421 197 VDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVGGS 262 (566)
Q Consensus 197 ~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~~~~ 262 (566)
+.+||||.+|..||..|.| .++.+|++||.+|+.|...+ .+++..+...|..+|.....+-...+
T Consensus 101 ~k~PmDL~~i~kKl~~~~Y-~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 101 QQQPLDLEGVKRKMDQGNY-TSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp C--CCSHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hcCCccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 6899999999999999976 78999999999999996654 36788777778877666666555443
No 135
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.73 E-value=0.00036 Score=66.52 Aligned_cols=51 Identities=20% Similarity=0.617 Sum_probs=37.7
Q ss_pred ccccccccccCCC----CceeeccCCCCCcccccCCCCC------CCCC-CCccCccccccC
Q 008421 297 HTCRQCEEKAGEK----DGLVCDSCEEMYHLSCIEPAFK------DIPP-KSWYCARCTAKG 347 (566)
Q Consensus 297 ~~C~~C~~~~~~~----~ll~Cd~C~~~~H~~Cl~P~l~------~~P~-g~W~C~~C~~~~ 347 (566)
..|.+|++..+.+ .|+.||.|+.+||..|+...-. .+|+ ..|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3699999965544 3999999999999999943211 1233 369999998544
No 136
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=96.64 E-value=0.0014 Score=67.32 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhh--------ccCCCCccCCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH
Q 008421 165 TDMCQRAFLEIITSEKFTLLCKVLL--------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 236 (566)
Q Consensus 165 ~~~c~~~l~~~l~se~f~~~~~~l~--------~~~~~~~~~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~ 236 (566)
...++.+|..++.. ...++.... ..|... |.+||||+||..|| ..|+.++.+|..|+++||.|...|
T Consensus 30 ~~~~~~~L~~~~~~--~r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~y 104 (311)
T 2r0y_A 30 NRFISFTLDVLIDK--YKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 104 (311)
T ss_dssp HHHHHHHHHHHHHH--SHHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHc
Confidence 44566677766643 222222111 123344 89999999999998 666668999999999999998887
Q ss_pred ---hHHHHHHHHHhhhhhhhhHhh
Q 008421 237 ---GAEIITLAKKLSELSQASYIE 257 (566)
Q Consensus 237 ---g~ev~~LA~~Ls~i~~~~~~~ 257 (566)
+..+...|..|..++...+.+
T Consensus 105 N~~~s~i~~~A~~l~~~~~~~~~k 128 (311)
T 2r0y_A 105 NEYDSLIVKNSMQVVMLIEFEVLK 128 (311)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhh
Confidence 577888999998887655443
No 137
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.61 E-value=0.00027 Score=58.30 Aligned_cols=47 Identities=23% Similarity=0.637 Sum_probs=37.0
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCC------------CCCCCCCCcccCCCcc
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPP------------RTSVPKGNWFCRKCDA 513 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Pp------------l~~~p~~~W~C~~C~~ 513 (566)
.|.+|.... .+.++.|..|.+.||..||.++ +...+...|.|+.|..
T Consensus 17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 567776554 5678999999999999999874 3445667899999953
No 138
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=96.29 E-value=0.0042 Score=56.93 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=59.4
Q ss_pred CCccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhhhhHhhhcCC--CCCCc
Q 008421 198 DRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVGG--SAPCS 266 (566)
Q Consensus 198 ~~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~---g~ev~~LA~~Ls~i~~~~~~~~~~~--~~~~~ 266 (566)
.+||+|.+|..|+..|.| ++...|..|+.++++|.+.| |++|..=|..|..+|...+.+...+ .+.|+
T Consensus 47 k~Pi~l~~Ikkri~~~~Y-~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~~~~sp 119 (147)
T 3iu6_A 47 KPPLTFDIIRKNVENNRY-RRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSP 119 (147)
T ss_dssp SCCCCHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred CCCcCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeecCc
Confidence 679999999999999999 78999999999999999887 7889999999999998888886643 45554
No 139
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.24 E-value=0.00068 Score=73.83 Aligned_cols=46 Identities=22% Similarity=0.665 Sum_probs=36.6
Q ss_pred cccccccccC-CCCceeeccCCCCCcccccCCCCCCCCC---CCccCcccccc
Q 008421 298 TCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIPP---KSWYCARCTAK 346 (566)
Q Consensus 298 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~---g~W~C~~C~~~ 346 (566)
.| +|+...+ ++.|+.||.|+.+||..|+ ++...+. +.|+|+.|...
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCC
Confidence 56 8988654 7889999999999999999 5544432 57999999754
No 140
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.79 E-value=0.0038 Score=54.69 Aligned_cols=40 Identities=25% Similarity=0.657 Sum_probs=29.8
Q ss_pred CCCceeeccCCCCCcccccCCCCCCCCCC----CccCccccccC
Q 008421 308 EKDGLVCDSCEEMYHLSCIEPAFKDIPPK----SWYCARCTAKG 347 (566)
Q Consensus 308 ~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g----~W~C~~C~~~~ 347 (566)
+..|+.|+.|+.+||..|+.+....++.+ .|+|+.|...+
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 44688999999999999998776544333 49999998543
No 141
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.33 E-value=0.005 Score=67.04 Aligned_cols=37 Identities=24% Similarity=0.798 Sum_probs=29.1
Q ss_pred CCCceeeccCCCCCcccccCCCCCCCC---CCCccCcccccc
Q 008421 308 EKDGLVCDSCEEMYHLSCIEPAFKDIP---PKSWYCARCTAK 346 (566)
Q Consensus 308 ~~~ll~Cd~C~~~~H~~Cl~P~l~~~P---~g~W~C~~C~~~ 346 (566)
+..|+.||.|+.+||..|+ +++.-+ .+.|+||.|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CV--gi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCS--GLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGT--TCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCC--CCChhHhcCCCeEECcCCcCC
Confidence 4578999999999999999 444322 267999999854
No 142
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=94.88 E-value=0.0021 Score=70.07 Aligned_cols=45 Identities=20% Similarity=0.522 Sum_probs=33.6
Q ss_pred cccccCC-CCceeeccCCCCCCcCCCCCCCCCCCC-CCCcccCCCcc
Q 008421 469 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVP-KGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p-~~~W~C~~C~~ 513 (566)
+|++..+ ++.||+||.|+.+||..|+........ .+.|+|+.|..
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 4555433 788999999999999999986433222 25799999974
No 143
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=94.33 E-value=0.0041 Score=66.92 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=35.7
Q ss_pred ccccccccC-CCCceeeccCCCCCcccccCCCCCCCC--C-CCccCcccccc
Q 008421 299 CRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIP--P-KSWYCARCTAK 346 (566)
Q Consensus 299 C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P--~-g~W~C~~C~~~ 346 (566)
.-+|+...+ ++.|+.||.|+.+||..|+ +++..+ . +.|+|+.|...
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccc
Confidence 347888644 7889999999999999999 554332 2 67999999754
No 144
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=93.96 E-value=0.016 Score=63.20 Aligned_cols=40 Identities=30% Similarity=0.675 Sum_probs=31.6
Q ss_pred CCCCceeeccCCCCCCcCCCCCCCCCCC-CCCCcccCCCcc
Q 008421 474 KDDEKIVMCDGCDQGYHLYCMDPPRTSV-PKGNWFCRKCDA 513 (566)
Q Consensus 474 ~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~-p~~~W~C~~C~~ 513 (566)
+.+..|+.||.|+.+||..|++...... ..+.|+||.|..
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 4567899999999999999998643322 336799999964
No 145
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.63 E-value=0.0038 Score=67.14 Aligned_cols=45 Identities=20% Similarity=0.538 Sum_probs=33.5
Q ss_pred cccccCC-CCceeeccCCCCCCcCCCCCCCCCCCC-CCCcccCCCcc
Q 008421 469 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVP-KGNWFCRKCDA 513 (566)
Q Consensus 469 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p-~~~W~C~~C~~ 513 (566)
+|++..+ ++.||+||.|+.+||..|++......+ .+.|+|+.|..
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 3455433 789999999999999999986432222 26799999964
No 146
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=90.32 E-value=0.046 Score=48.05 Aligned_cols=35 Identities=23% Similarity=0.674 Sum_probs=27.7
Q ss_pred ceeeccCCCCCCcCCCCCCCC------CCCCC-CCcccCCCc
Q 008421 478 KIVMCDGCDQGYHLYCMDPPR------TSVPK-GNWFCRKCD 512 (566)
Q Consensus 478 ~ll~Cd~C~~~~H~~Cl~Ppl------~~~p~-~~W~C~~C~ 512 (566)
.||.||.|..|||..|....- ..+|. ..|.||.|.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~ 42 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 42 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence 389999999999999987532 44453 469999996
No 147
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=88.48 E-value=0.11 Score=45.48 Aligned_cols=38 Identities=21% Similarity=0.628 Sum_probs=29.0
Q ss_pred CceeeccCCCCCcccccCCCC------CCCCC-CCccCccccccC
Q 008421 310 DGLVCDSCEEMYHLSCIEPAF------KDIPP-KSWYCARCTAKG 347 (566)
Q Consensus 310 ~ll~Cd~C~~~~H~~Cl~P~l------~~~P~-g~W~C~~C~~~~ 347 (566)
.|+.||.|..+||..|..-.- ..+|+ ..|.||.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 478999999999999985332 35564 469999998543
No 148
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=85.90 E-value=0.45 Score=44.78 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=31.4
Q ss_pred ccccCC-CCceeeccCCCCCCcCCCCCCCCCC-CC---CCCcccCCCcc
Q 008421 470 CLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTS-VP---KGNWFCRKCDA 513 (566)
Q Consensus 470 C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~-~p---~~~W~C~~C~~ 513 (566)
|+..++ ...+|+|+.|.++||..|+..+... +| -....|..|..
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 344333 6789999999999999999865433 23 22478999975
No 149
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=83.08 E-value=0.8 Score=43.04 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=30.4
Q ss_pred ccccccC-CCCceeeccCCCCCcccccCCCCCC-CCC---CCccCccccc
Q 008421 301 QCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKD-IPP---KSWYCARCTA 345 (566)
Q Consensus 301 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~---g~W~C~~C~~ 345 (566)
.||...+ .-.+|.|++|..+||..|+..+... +|- -.+.|..|..
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 3676444 3468999999999999999754433 331 1367999974
No 150
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=81.87 E-value=0.31 Score=45.00 Aligned_cols=49 Identities=24% Similarity=0.717 Sum_probs=37.9
Q ss_pred cccccccccccCCCCceeec--cCCCCCcccccCCCC-----CC-CCCCCccCccccccC
Q 008421 296 VHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAF-----KD-IPPKSWYCARCTAKG 347 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l-----~~-~P~g~W~C~~C~~~~ 347 (566)
+..|.+|+. +++|++|| .|.+.|=..|+.--+ .. +....|.|--|.+..
T Consensus 79 ~~yC~wC~~---Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCG---GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSC---CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecC---CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 347999986 88999999 899999999985222 11 445679999998544
No 151
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=73.80 E-value=1.1 Score=29.87 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=16.3
Q ss_pred ccccCCCC--CCCCCCCccCccccccC
Q 008421 323 LSCIEPAF--KDIPPKSWYCARCTAKG 347 (566)
Q Consensus 323 ~~Cl~P~l--~~~P~g~W~C~~C~~~~ 347 (566)
.+|+..+. +..-+|+|.|..|+..+
T Consensus 2 tycielgercpnpregdwcchkcvpeg 28 (36)
T 4b2u_A 2 TYCIELGERCPNPREGDWCCHKCVPEG 28 (36)
T ss_dssp CSSCCTTSBCCCGGGCCSSSSEEEEET
T ss_pred ceeeeccccCcCCCccCeeeecccccC
Confidence 35664332 23345999999999665
No 152
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=70.05 E-value=0.6 Score=35.90 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=30.7
Q ss_pred cccccccccccCCCCceee--ccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVC--DSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
...|++|....++.-++.| .+.-+.||..||..=+.. .+.+.|+-|..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~ 55 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGV 55 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCC
Confidence 3479999875544444554 344559999999543321 24578888863
No 153
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.78 E-value=0.85 Score=47.90 Aligned_cols=49 Identities=20% Similarity=0.634 Sum_probs=37.1
Q ss_pred cccccccccccCCCCceeec--cCCCCCcccccCCCC-----CC-CCCCCccCccccccC
Q 008421 296 VHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAF-----KD-IPPKSWYCARCTAKG 347 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l-----~~-~P~g~W~C~~C~~~~ 347 (566)
+..|+.|+. ++++++|| .|.+.|-..|+.--+ .. .....|.|--|....
T Consensus 93 ~~yCr~C~~---Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCS---GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCC---CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCC---CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 347999986 88999999 999999999985322 11 223569999998554
No 154
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=66.70 E-value=3 Score=30.32 Aligned_cols=45 Identities=16% Similarity=0.464 Sum_probs=30.3
Q ss_pred ccccccccccCC-CCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 297 HTCRQCEEKAGE-KDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 297 ~~C~~C~~~~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
..|.+|...-.. +.......|...||..|+..-+.. ...||.|..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCC
Confidence 479999875333 334444469999999999654433 357888863
No 155
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=63.88 E-value=1.3 Score=34.03 Aligned_cols=46 Identities=17% Similarity=0.456 Sum_probs=30.3
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+..|.+|...-..+..+..-.|...||..|+..-+.. ...||.|..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~ 59 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRV 59 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCc
Confidence 3479999874434444445579999999998543322 235888864
No 156
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.08 E-value=3.2 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.539 Sum_probs=28.1
Q ss_pred ccccccccccC-CCCce-ee--ccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 297 HTCRQCEEKAG-EKDGL-VC--DSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 297 ~~C~~C~~~~~-~~~ll-~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
..|.||....+ ++.++ .| .+....||..||..=+.. .+...||-|..
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~ 66 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKY 66 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCC
Confidence 47999986443 33333 12 233599999999543321 12357888864
No 157
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=58.06 E-value=8.1 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.763 Sum_probs=16.7
Q ss_pred CCCCccCccccccCCCCCCccccccccc
Q 008421 334 PPKSWYCARCTAKGFGSPHENCIVCERM 361 (566)
Q Consensus 334 P~g~W~C~~C~~~~~~~~~~~C~~C~~l 361 (566)
..|+|.|+.|...... .-..|..|..+
T Consensus 3 ~~gDW~C~~C~~~Nfa-~R~~C~~C~~p 29 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWA-RRSECNMCNTP 29 (33)
T ss_dssp SSSSCBCSSSCCBCCT-TCSBCSSSCCB
T ss_pred CCCCcccCCCCCcccc-ccccccccCCc
Confidence 4689999999765521 12346555543
No 158
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.84 E-value=5.4 Score=31.22 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=29.6
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+..|.+|...-.....+.--.|...||..|+..-+.. ...||.|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~ 60 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRK 60 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCC
Confidence 3479999875433333333368899999998543322 257888864
No 159
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.25 E-value=2.4 Score=33.13 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=31.3
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+..|.+|...-..+..+..-.|...||..|+..-+.. ...||.|..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 68 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRA 68 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCC
Confidence 4579999975444545555569999999999643322 246888863
No 160
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=54.05 E-value=2.8 Score=34.37 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=31.0
Q ss_pred CcccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 295 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 295 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
++..|.+|...-..+..+.--.|...||..|+..-+.. .-.||.|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 85 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRC 85 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCc
Confidence 34579999875444444444459999999998643332 237888863
No 161
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.16 E-value=4.8 Score=32.24 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=20.7
Q ss_pred eeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 312 LVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 312 l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+.--.|.-.||..|+..=+..- -.||.|..
T Consensus 43 ~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 72 (81)
T 2ecl_A 43 VVWGECNHSFHNCCMSLWVKQN----NRCPLCQQ 72 (81)
T ss_dssp EEEETTSCEEEHHHHHHHTTTC----CBCTTTCC
T ss_pred EEeCCCCCccChHHHHHHHHhC----CCCCCcCC
Confidence 3334699999999996544332 27888874
No 162
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=52.97 E-value=2.7 Score=30.48 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=30.6
Q ss_pred ccccccccccc-CCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKA-GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+..|.+|...- +.+.....-.|.-.||..|+..-+..- ..||.|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~ 51 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSG 51 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCC
Confidence 34799998743 334456667799999999985332221 56888863
No 163
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=49.10 E-value=5.1 Score=28.98 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=27.7
Q ss_pred cccccccCC-CCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 467 CRACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 467 C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
|.+|...-. ++..+....|...||..|+..-+.. ...||.|+..
T Consensus 8 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 455544322 2334444569999999999764433 3579999753
No 164
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=49.05 E-value=2.4 Score=39.13 Aligned_cols=46 Identities=22% Similarity=0.691 Sum_probs=34.2
Q ss_pred ccccccccCCCCceeecc--CCCCCCcCCCCCCCCCC------CCCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTS------VPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~Ppl~~------~p~~~W~C~~C~~~ 514 (566)
.|..| .+++.++.|| .|.++|=..|+.--+.. ....+|.|..|.+.
T Consensus 81 yC~wC---~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 81 YCTIC---CGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SCTTT---SCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred eeeEe---cCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 46677 4578999999 89999999997542211 34567999999864
No 165
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=49.03 E-value=9.7 Score=31.30 Aligned_cols=74 Identities=19% Similarity=0.489 Sum_probs=38.3
Q ss_pred cccccccCcccccCCCcccccCCccCCCccccccCCCc----cccc-----cCCCCccCCCc-------ccccccccCCC
Q 008421 413 ANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP----KQLK-----RYGPCWFCPSC-------LCRACLTDKDD 476 (566)
Q Consensus 413 ~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~~----~~~~-----~~~~~w~Cp~C-------~C~~C~~~~~~ 476 (566)
...|..|++.... ++.++.-. ++.||..|..= ..+. ......+|..| .|..|.+.=.+
T Consensus 5 ~~~C~~C~~~I~~-~~~~~~a~-----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 5 SSGCVECRKPIGA-DSKEVHYK-----NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCBCSSSCCBCCS-SSCEEEET-----TEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS
T ss_pred CCcCcccCCcccC-CceEEEEC-----ccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc
Confidence 4678999988753 23333221 56788887642 1111 12334556555 36666544332
Q ss_pred -CceeeccCCCCCCcCCCC
Q 008421 477 -EKIVMCDGCDQGYHLYCM 494 (566)
Q Consensus 477 -~~ll~Cd~C~~~~H~~Cl 494 (566)
+..+ ..=+..||..|.
T Consensus 79 ~~~~~--~a~~~~~H~~CF 95 (101)
T 2cup_A 79 GDQNV--EYKGTVWHKDCF 95 (101)
T ss_dssp SSCEE--ESSSCEEETTTC
T ss_pred CCeEE--EeCCcchHHhCC
Confidence 2222 234566776664
No 166
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.79 E-value=6.9 Score=31.33 Aligned_cols=44 Identities=25% Similarity=0.663 Sum_probs=30.4
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccc
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 344 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 344 (566)
..|.+|...-.. -+.|..|...||..|+..=+..- +.=.||.|.
T Consensus 16 ~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr 59 (74)
T 2ct0_A 16 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCN 59 (74)
T ss_dssp CBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTC--SSCCCTTTC
T ss_pred CcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhc--CCCCCCCCc
Confidence 369999874432 35788999999999996444332 224677776
No 167
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=47.06 E-value=8.1 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=27.7
Q ss_pred cccccccccCcccccCCCcccccCCccCCCccccccCCC
Q 008421 411 ESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLT 449 (566)
Q Consensus 411 ~~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~ 449 (566)
+....|.+|.... .+..+.|....| ..+||+.|-.
T Consensus 15 R~~l~C~iC~~~~---~GAciqC~~~~C-~~~fHv~CA~ 49 (87)
T 2lq6_A 15 RWKLTCYLCKQKG---VGASIQCHKANC-YTAFHVTCAQ 49 (87)
T ss_dssp CCCCCBTTTTBCC---SSCEEECSCTTT-CCEEEHHHHH
T ss_pred HhcCCCcCCCCCC---CcEeEecCCCCC-CCcCcHHHHH
Confidence 5667899997641 367899999899 6889999964
No 168
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.06 E-value=15 Score=26.86 Aligned_cols=31 Identities=26% Similarity=0.716 Sum_probs=22.5
Q ss_pred CCCCCCccCccccccCCCCCCcccccccccCC
Q 008421 332 DIPPKSWYCARCTAKGFGSPHENCIVCERMNA 363 (566)
Q Consensus 332 ~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~~ 363 (566)
..+.|.|-|+.|.... ..-...|++|+....
T Consensus 6 k~~~gsW~C~~C~v~N-~a~~~kC~aC~~pkp 36 (47)
T 2ebr_A 6 SGPEGSWDCELCLVQN-KADSTKCLACESAKP 36 (47)
T ss_dssp SSCCSSCCCSSSCCCC-CSSCSBCSSSCCBCC
T ss_pred cCCCCeeECCeeecCC-cCCcceecCcCCCCC
Confidence 4577999999998655 234557888876663
No 169
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.78 E-value=5.2 Score=32.36 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=26.2
Q ss_pred ccccccccCC-CCceee-c--cCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 466 LCRACLTDKD-DEKIVM-C--DGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~-~~~ll~-C--d~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
.|.+|....+ ++.++. | ...-..||..|+..=+.. .+...||.|+..
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~ 67 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYE 67 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCB
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCe
Confidence 4566654333 333432 1 222489999999862211 123589999754
No 170
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=45.58 E-value=7 Score=26.15 Aligned_cols=26 Identities=23% Similarity=0.761 Sum_probs=15.7
Q ss_pred CCCccCccccccCCCCCCccccccccc
Q 008421 335 PKSWYCARCTAKGFGSPHENCIVCERM 361 (566)
Q Consensus 335 ~g~W~C~~C~~~~~~~~~~~C~~C~~l 361 (566)
.|+|.|+.|..... .--..|+.|...
T Consensus 3 ~gDW~C~~C~~~Nf-a~r~~C~~C~~p 28 (32)
T 2lk0_A 3 FEDWLCNKCCLNNF-RKRLKCFRCGAD 28 (32)
T ss_dssp CSEEECTTTCCEEE-TTCCBCTTTCCB
T ss_pred CCCCCcCcCcCCcC-hhcceecCCCCc
Confidence 38999999975431 112346666543
No 171
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=45.04 E-value=3.7 Score=34.72 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=29.5
Q ss_pred ccccccccccCCC---------------CceeeccCCCCCcccccCCCCCCC-CCCCccCccccc
Q 008421 297 HTCRQCEEKAGEK---------------DGLVCDSCEEMYHLSCIEPAFKDI-PPKSWYCARCTA 345 (566)
Q Consensus 297 ~~C~~C~~~~~~~---------------~ll~Cd~C~~~~H~~Cl~P~l~~~-P~g~W~C~~C~~ 345 (566)
+.|.+|...-... ..+.--.|.-.||..|+..-+... +...-.||.|..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 4799997642111 223345799999999996433211 134467888864
No 172
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=44.49 E-value=3.2 Score=43.54 Aligned_cols=46 Identities=26% Similarity=0.748 Sum_probs=33.5
Q ss_pred ccccccccCCCCceeecc--CCCCCCcCCCCCCCCC-----C-CCCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRT-----S-VPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~Ppl~-----~-~p~~~W~C~~C~~~ 514 (566)
.|..| ..++.++.|| .|.++|=..|+.--+. . ....+|.|..|...
T Consensus 95 yCr~C---~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 95 YCSIC---CSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SCTTT---CCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cceEc---CCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 56777 4567899999 9999999999764221 1 12357999999753
No 173
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.88 E-value=11 Score=27.27 Aligned_cols=44 Identities=23% Similarity=0.565 Sum_probs=27.7
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARC 343 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C 343 (566)
...|.+|...-....++ .|.-.||..|+..-+... .+...||.|
T Consensus 15 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred CCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 34799998754433333 688889999986443322 234667766
No 174
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=41.88 E-value=23 Score=27.37 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=30.6
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCC---CCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDI---PPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~---P~g~W~C~~C~~ 345 (566)
+..|.+|...-....++ .|...||..|+..-+... ..+...||.|..
T Consensus 12 ~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61 (79)
T ss_dssp CCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCC
T ss_pred CCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCC
Confidence 34799998754333333 688899999997554431 123578888864
No 175
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=40.95 E-value=7.6 Score=40.30 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=24.2
Q ss_pred ceeecc--CCCCCCcCCCCCCCCCCCCC-------CCcccCCCcchh
Q 008421 478 KIVMCD--GCDQGYHLYCMDPPRTSVPK-------GNWFCRKCDAGI 515 (566)
Q Consensus 478 ~ll~Cd--~C~~~~H~~Cl~Ppl~~~p~-------~~W~C~~C~~~~ 515 (566)
....|+ .|...||..|+..=+...+. -.-.||.|+...
T Consensus 325 Pdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 325 PLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 345787 89999999999762111111 113499998643
No 176
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=40.94 E-value=12 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.699 Sum_probs=18.9
Q ss_pred CCCCccCccccccCCCCCCcccccccccC
Q 008421 334 PPKSWYCARCTAKGFGSPHENCIVCERMN 362 (566)
Q Consensus 334 P~g~W~C~~C~~~~~~~~~~~C~~C~~l~ 362 (566)
..|.|-|+.|.... ......|++|...+
T Consensus 4 ~~g~W~C~~C~~~N-~~~~~kC~aC~tpk 31 (33)
T 3gj3_B 4 GSGTWDCDTCLVQN-KPEAVKCVACETPK 31 (33)
T ss_dssp --CCEECTTTCCEE-CTTCSBCTTTCCBC
T ss_pred CCCceeCCcccCCC-ccccCEEcccCCCC
Confidence 45889999998655 23355788887554
No 177
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.92 E-value=7.1 Score=30.50 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=19.6
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 484 GCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 484 ~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
.|...||..|+..-+.. ...||.|+..
T Consensus 35 ~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 61 (78)
T 2ect_A 35 PCNHLFHDSCIVPWLEQ----HDSCPVCRKS 61 (78)
T ss_dssp TTSCEEETTTTHHHHTT----TCSCTTTCCC
T ss_pred CCCCeecHHHHHHHHHc----CCcCcCcCCc
Confidence 58899999999753322 2489999754
No 178
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.34 E-value=3.8 Score=31.76 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=28.5
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
..|.+|...-.....+.--.|...||..|+..-+..- ..||.|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~ 60 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNM 60 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCc
Confidence 4799998754333333223589999999985433221 36888863
No 179
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.26 E-value=3.7 Score=32.06 Aligned_cols=45 Identities=27% Similarity=0.641 Sum_probs=28.0
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
.|.+|...-.....+..-.|...||..|+..-+.. ...||.|+..
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 35566544333434444469999999999763221 2479999754
No 180
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=39.76 E-value=12 Score=30.92 Aligned_cols=28 Identities=32% Similarity=0.941 Sum_probs=22.8
Q ss_pred cccccccccCCCCceeec--cCCCCCccccc
Q 008421 298 TCRQCEEKAGEKDGLVCD--SCEEMYHLSCI 326 (566)
Q Consensus 298 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl 326 (566)
.|.+|+.. ..|..+.|. .|..+||+.|.
T Consensus 19 ~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 19 TCYLCKQK-GVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CBTTTTBC-CSSCEEECSCTTTCCEEEHHHH
T ss_pred CCcCCCCC-CCcEeEecCCCCCCCcCcHHHH
Confidence 79999763 247788887 59999999996
No 181
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.72 E-value=18 Score=26.56 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCCCCCCccCccccccCCCCCCcccccccccCCC
Q 008421 331 KDIPPKSWYCARCTAKGFGSPHENCIVCERMNAN 364 (566)
Q Consensus 331 ~~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~~~ 364 (566)
...+.|.|-|..|.... ..-...|++|+.++..
T Consensus 5 ~~~~~g~W~C~~C~v~N-~a~~~kC~aCetpKpg 37 (47)
T 2ebq_A 5 SSGVIGTWDCDTCLVQN-KPEAIKCVACETPKPG 37 (47)
T ss_dssp CCCCSSSEECSSSCCEE-CSSCSBCSSSCCBCSC
T ss_pred cCCCCCceECCeeeccC-ccCCceecCcCCCCCC
Confidence 35677999999997654 2345579999877643
No 182
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.04 E-value=28 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.639 Sum_probs=22.2
Q ss_pred CCCCCCCccCccccccCCCCCCcccccccccC
Q 008421 331 KDIPPKSWYCARCTAKGFGSPHENCIVCERMN 362 (566)
Q Consensus 331 ~~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~ 362 (566)
-..+.|.|-|..|.... ..-...|++|+..+
T Consensus 25 FK~~~GsWeC~~C~V~N-~a~~~kC~ACetpK 55 (57)
T 2ebv_A 25 FKRPIGSWECSVCCVSN-NAEDNKCVSCMSEK 55 (57)
T ss_dssp CCCCSSSCCCSSSCCCC-CSSCSBCSSSCCBC
T ss_pred cCCCCCeeeCCeeEccC-ccCCceeeEcCCcC
Confidence 34677999999998655 23456788887654
No 183
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=36.48 E-value=14 Score=25.18 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=18.5
Q ss_pred CCCCccCccccccCCCCCCcccccccccC
Q 008421 334 PPKSWYCARCTAKGFGSPHENCIVCERMN 362 (566)
Q Consensus 334 P~g~W~C~~C~~~~~~~~~~~C~~C~~l~ 362 (566)
..|.|-|+.|.... ....-.|+.|+..+
T Consensus 4 ~~G~W~C~~C~v~N-~~~~~kC~aCet~K 31 (34)
T 3gj5_B 4 GSGSWDCEVCLVQN-KADSTKCIACESAK 31 (34)
T ss_dssp --CCEECTTTCCEE-CSSCSBCTTTCCBC
T ss_pred CCCceECCeeEeEC-ccccCEEcccCCcC
Confidence 66899999997654 22345788887654
No 184
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=36.36 E-value=15 Score=38.14 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=23.3
Q ss_pred ccccccccccCC-CCc--eeec--cCCCCCcccccCC
Q 008421 297 HTCRQCEEKAGE-KDG--LVCD--SCEEMYHLSCIEP 328 (566)
Q Consensus 297 ~~C~~C~~~~~~-~~l--l~Cd--~C~~~~H~~Cl~P 328 (566)
..|.+|-..-.. +.+ ..|+ .|...||..|+..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~k 345 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHH
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHH
Confidence 369999764333 333 5698 8999999999943
No 185
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.44 E-value=6.9 Score=29.26 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=25.7
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARC 343 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C 343 (566)
+..|.+|...-... .++ .|.-.||..|+..-+.. ..+...||.|
T Consensus 20 ~~~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP-VTI--DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC-EEC--TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred CCCCCcCCchhCCe-EEe--CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 44799998743322 222 78888888888533321 1233567665
No 186
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=34.93 E-value=5.2 Score=33.78 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=23.3
Q ss_pred eeeccCCCCCCcCCCCCCCCCCC-CCCCcccCCCcch
Q 008421 479 IVMCDGCDQGYHLYCMDPPRTSV-PKGNWFCRKCDAG 514 (566)
Q Consensus 479 ll~Cd~C~~~~H~~Cl~Ppl~~~-p~~~W~C~~C~~~ 514 (566)
.+.--.|...||..|+..-+... ....-.||.|+..
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 33355789999999997633111 1234579999853
No 187
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.70 E-value=36 Score=24.86 Aligned_cols=41 Identities=27% Similarity=0.574 Sum_probs=25.6
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
...|.+|...-....++ .|...|+..|+.. ....||.|...
T Consensus 6 ~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~-------~~~~CP~Cr~~ 46 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLL---PCLHTLCSGCLEA-------SGMQCPICQAP 46 (56)
T ss_dssp CSSCSSSCSSCBCCSCS---TTSCCSBTTTCSS-------SSSSCSSCCSS
T ss_pred CCCceEeCCccCCeEEc---CCCCcccHHHHcc-------CCCCCCcCCcE
Confidence 34699998744333333 4777777778743 34578888643
No 188
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.48 E-value=12 Score=28.10 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=28.9
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
...|.+|...-....+ -.|...||..|+..-+. .+...||.|..
T Consensus 15 ~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 58 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLS---SSSPKCTACQE 58 (66)
T ss_dssp CEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT---TSSCCCTTTCC
T ss_pred CCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH---hCcCCCCCCCc
Confidence 3479999874433333 27888899999864432 34467888864
No 189
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.24 E-value=13 Score=28.38 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=29.3
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+..|.+|...-... .++ .|...||..|+..-+.. ..+...||.|..
T Consensus 20 ~~~C~IC~~~~~~~-~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 20 EVICPICLDILQKP-VTI--DCGHNFCLKCITQIGET-SCGFFKCPLCKT 65 (73)
T ss_dssp CCBCTTTCSBCSSE-EEC--TTCCEEEHHHHHHHCSS-SCSCCCCSSSCC
T ss_pred CCEeccCCcccCCe-EEc--CCCChhhHHHHHHHHHc-CCCCCCCCCCCC
Confidence 44799998743322 222 79888999998644331 234567888874
No 190
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=31.75 E-value=23 Score=32.16 Aligned_cols=94 Identities=19% Similarity=0.409 Sum_probs=52.0
Q ss_pred ccccccccCcccccCCCcccccCCccCCCccccccCCCc----ccc----ccCCCCccCCCc-------ccccccccCCC
Q 008421 412 SANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP----KQL----KRYGPCWFCPSC-------LCRACLTDKDD 476 (566)
Q Consensus 412 ~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~~----~~~----~~~~~~w~Cp~C-------~C~~C~~~~~~ 476 (566)
....|..|++.+.. ..++.. .++.||..|..= ..+ -......+|..| .|..|+..-.+
T Consensus 5 ~~~~C~~C~~~I~~--~~~~~a-----~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 5 EIPMCAGCDQHILD--RFILKA-----LDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp --CBBSSSSSBCCS--SSCEEC-----SSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred CCCccccCCCccCC--cEEEEE-----CCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCC
Confidence 34689999998764 222222 157788888742 111 123456788777 48888764433
Q ss_pred CceeeccCCCCCCcCCCCC-----CCCC------CCCCCCcccCCCcc
Q 008421 477 EKIVMCDGCDQGYHLYCMD-----PPRT------SVPKGNWFCRKCDA 513 (566)
Q Consensus 477 ~~ll~Cd~C~~~~H~~Cl~-----Ppl~------~~p~~~W~C~~C~~ 513 (566)
..++. ..-+..||..|.. -+|. .+..+..+|..|..
T Consensus 78 ~~~v~-~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 78 TQVVR-RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp TSEEE-EETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHH
T ss_pred CcEEE-EcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHH
Confidence 33321 2456788877632 1221 12345688887753
No 191
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.27 E-value=23 Score=25.79 Aligned_cols=33 Identities=27% Similarity=0.757 Sum_probs=17.3
Q ss_pred eccCCCCCCcCCCCCC-CCCCCCCCCcccCCCcch
Q 008421 481 MCDGCDQGYHLYCMDP-PRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 481 ~Cd~C~~~~H~~Cl~P-pl~~~p~~~W~C~~C~~~ 514 (566)
.|..|+..|...=-+| +...+| .+|.||.|...
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP-~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLP-DDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSC-TTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCC-CCCcCcCCCCc
Confidence 4555555554322221 223343 56999999753
No 192
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=30.86 E-value=11 Score=32.82 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=0.0
Q ss_pred cCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 316 SCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 316 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
.|.-.||..|+.+=|.. .-.||.|...
T Consensus 83 ~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 69999999999765543 2468888643
No 193
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.85 E-value=7.9 Score=30.91 Aligned_cols=44 Identities=20% Similarity=0.563 Sum_probs=28.0
Q ss_pred cccccccCC-CCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 467 CRACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 467 C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
|.+|..... ++.++.-..|...||..|+..=+... -.||.|+..
T Consensus 29 C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 73 (81)
T 2ecl_A 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQD 73 (81)
T ss_dssp CTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred CcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence 555554322 23344445799999999998644332 289999854
No 194
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.40 E-value=28 Score=28.70 Aligned_cols=35 Identities=23% Similarity=0.674 Sum_probs=27.1
Q ss_pred CCceeeccCCCC-CCcCCCCCCCCCCCCCCCcccCCCcc
Q 008421 476 DEKIVMCDGCDQ-GYHLYCMDPPRTSVPKGNWFCRKCDA 513 (566)
Q Consensus 476 ~~~ll~Cd~C~~-~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 513 (566)
.=.||.|..|.. .-|..|... ......|.|..|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~l---~~~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSSL---RPNSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGTC---CTTCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhCC---cCCCCCEECCcCcc
Confidence 346888999976 899999973 23456799999974
No 195
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.32 E-value=13 Score=28.58 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=27.3
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
+..|.+|...-... +.- .|...||..|+..-+.. ...||.|..
T Consensus 15 ~~~C~IC~~~~~~~--~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 57 (71)
T 2d8t_A 15 VPECAICLQTCVHP--VSL-PCKHVFCYLCVKGASWL----GKRCALCRQ 57 (71)
T ss_dssp CCBCSSSSSBCSSE--EEE-TTTEEEEHHHHHHCTTC----SSBCSSSCC
T ss_pred CCCCccCCcccCCC--EEc-cCCCHHHHHHHHHHHHC----CCcCcCcCc
Confidence 44799998643222 222 58888999998543332 267888864
No 196
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=30.25 E-value=12 Score=31.84 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=21.6
Q ss_pred eeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 312 LVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 312 l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
+.--.|...||..|+.+=|.. .-.||.|...
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 333479999999999654433 3568888743
No 197
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=29.63 E-value=22 Score=32.63 Aligned_cols=76 Identities=22% Similarity=0.494 Sum_probs=43.5
Q ss_pred cccccccccCcccccCCCcccccCCccCCCccccccCCCc----cccc----cCCCCccCCCc-------ccccccccCC
Q 008421 411 ESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP----KQLK----RYGPCWFCPSC-------LCRACLTDKD 475 (566)
Q Consensus 411 ~~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~~----~~~~----~~~~~w~Cp~C-------~C~~C~~~~~ 475 (566)
.....|..|++.+.. ..++.. .++.||+.|..= ..+. ......+|..| .|..|+..-.
T Consensus 58 ~~~~~C~~C~~~I~~--~~~~~a-----~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 58 PEIPMCAGCDQHILD--RFILKA-----LDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp CSCCBCBTSSSBCCC--SEEEEE-----TTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred CCCCcCccCCCCccC--ceeEEe-----cCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccC
Confidence 345799999998764 222222 267789888742 1111 22355778766 3778865433
Q ss_pred CCceeeccCCCCCCcCCCC
Q 008421 476 DEKIVMCDGCDQGYHLYCM 494 (566)
Q Consensus 476 ~~~ll~Cd~C~~~~H~~Cl 494 (566)
+..++ -..-+..||..|.
T Consensus 131 ~~~~v-~~a~~~~~H~~CF 148 (182)
T 2jtn_A 131 PTQVV-RRAQDFVYHLHCF 148 (182)
T ss_dssp SSCCC-CEETTEECCTTTC
T ss_pred CCceE-EecCCCCEEeCCC
Confidence 32222 1245678888874
No 198
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.60 E-value=29 Score=28.59 Aligned_cols=34 Identities=24% Similarity=0.689 Sum_probs=25.9
Q ss_pred CCceeeccCC-CCCcccccCCCCCCCCCCCccCccccc
Q 008421 309 KDGLVCDSCE-EMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 309 ~~ll~Cd~C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
=.|++|..|. ..-|..|. .+.. ...+|.|..|..
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs--~l~~-~~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCS--SLRP-NSKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGG--TCCT-TCSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHh--CCcC-CCCCEECCcCcc
Confidence 4689999996 67899998 3433 345699999984
No 199
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=29.60 E-value=20 Score=29.71 Aligned_cols=29 Identities=31% Similarity=0.775 Sum_probs=18.8
Q ss_pred CCCCCccCccccccCCCCCCcccccccccC
Q 008421 333 IPPKSWYCARCTAKGFGSPHENCIVCERMN 362 (566)
Q Consensus 333 ~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~ 362 (566)
.+.|+|.|+.|..... .-...|++|...+
T Consensus 61 ~~~g~W~C~~C~~~N~-a~~~~C~~C~~pk 89 (92)
T 3gj8_B 61 KPEGSWDCEVCLVQNK-ADSTKCIACESAK 89 (92)
T ss_dssp ---CCEECTTTCCEEC-SSCSBCTTTCCBC
T ss_pred CCCCcccCCcCCcCCh-hhcccccccCCCC
Confidence 3569999999986652 2345688887654
No 200
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=29.43 E-value=4.8 Score=32.91 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=26.9
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
.|.+|...-..+..+..-.|...||..|+..-+.. .-.||.|+..
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 35555543333333333349999999998763322 2389999854
No 201
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=28.82 E-value=46 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.776 Sum_probs=17.7
Q ss_pred CCCCCccCc--cccccCCCCCCcccccccccC
Q 008421 333 IPPKSWYCA--RCTAKGFGSPHENCIVCERMN 362 (566)
Q Consensus 333 ~P~g~W~C~--~C~~~~~~~~~~~C~~C~~l~ 362 (566)
.-.|+|.|+ .|..... .--..|..|....
T Consensus 10 ~~~GDW~C~~~~C~~~Nf-a~R~~C~~C~~pr 40 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNF-ARRTSCDRCGREK 40 (45)
T ss_dssp SCSSSCBCSSTTTCCBCC-SSCSBCSSSCCBC
T ss_pred CCCCCcCCCCCCCCCEEc-cccccccccCCcC
Confidence 446899999 8976542 1123466665443
No 202
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=28.75 E-value=15 Score=35.76 Aligned_cols=44 Identities=25% Similarity=0.677 Sum_probs=31.5
Q ss_pred ccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccc
Q 008421 297 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 344 (566)
Q Consensus 297 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 344 (566)
..|.+|..---. -..|..|...||..|+.--+.. .+.-.||.|.
T Consensus 181 ~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~ 224 (238)
T 3nw0_A 181 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCN 224 (238)
T ss_dssp CBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTT--CSSCBCTTTC
T ss_pred CcCcchhhHHhC--CcccCccChHHHHHHHHHHHHh--CCCCCCCCCC
Confidence 379999874433 3779899999999999543332 2345788885
No 203
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.66 E-value=2.2e+02 Score=22.17 Aligned_cols=32 Identities=22% Similarity=0.745 Sum_probs=19.1
Q ss_pred cccccccccCcccccCCCcccccCCccCCCccccccCCC
Q 008421 411 ESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLT 449 (566)
Q Consensus 411 ~~~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~ 449 (566)
.....|..|++.+.. .+.+. - .++.||..|..
T Consensus 13 ~~~~~C~~C~~~I~~-~e~v~-a-----~~~~wH~~CF~ 44 (82)
T 2co8_A 13 GAGDLCALCGEHLYV-LERLC-V-----NGHFFHRSCFR 44 (82)
T ss_dssp CSSCBCSSSCCBCCT-TTBCC-B-----TTBCCBTTTCB
T ss_pred CCCCCCcccCCCccc-ceEEE-E-----CCCeeCCCcCE
Confidence 345689999998754 23222 1 15667776543
No 204
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.37 E-value=42 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.550 Sum_probs=20.8
Q ss_pred CCCCCCccCccccccCCCCCCcccccccccC
Q 008421 332 DIPPKSWYCARCTAKGFGSPHENCIVCERMN 362 (566)
Q Consensus 332 ~~P~g~W~C~~C~~~~~~~~~~~C~~C~~l~ 362 (566)
..+.+.|.|+.|..... .....|..|....
T Consensus 6 ~~~~~~W~C~~CT~~N~-~~~~~C~~C~~pr 35 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFRNS-AEAFKCMMCDVRK 35 (53)
T ss_dssp SSCCCCEECSSSCCEEC-SSCSSCSSSCCCC
T ss_pred CCCCCCcCCCCCccCCC-CCCCccCCCCCcC
Confidence 34567899999986552 2345788887665
No 205
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=25.30 E-value=22 Score=29.91 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=29.8
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
+..|.+|...-.....+ .|...|+..|+..-+. .+...||.|...
T Consensus 15 ~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL---PCNHTLCKPCFQSTVE---KASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC---TTSCEECHHHHCCCCC---TTTSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc---CCCCHHhHHHHHHHHh---HCcCCCCCCCcc
Confidence 34799998643322222 7998999999865443 345789999743
No 206
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=25.24 E-value=15 Score=31.94 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=0.0
Q ss_pred eeccCCCCCCcCCCCCCCCCCCCCCCcccCCCcch
Q 008421 480 VMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 514 (566)
Q Consensus 480 l~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 514 (566)
+.--.|...||..|+.+=+.. .-.||.|+..
T Consensus 79 v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 79 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -----------------------------------
T ss_pred cccCCcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 333479999999999874433 2369999754
No 207
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=25.10 E-value=59 Score=27.49 Aligned_cols=64 Identities=9% Similarity=0.104 Sum_probs=42.2
Q ss_pred CccchhhhhhhhccccccCcchhhhhhHHHHHHHHHHHhHHHHHHHHHhhhhhhhhHhhhcCCCC
Q 008421 199 RVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIGAEIITLAKKLSELSQASYIEHVGGSA 263 (566)
Q Consensus 199 ~~~Dl~~Id~rl~~g~Y~~~p~~f~~DV~~vW~kl~~~g~ev~~LA~~Ls~i~~~~~~~~~~~~~ 263 (566)
+-|+|..-+..... .|..+..+-.-++...|..-+.-...+..|...|..+-+....+.+.+..
T Consensus 37 r~Lg~~~~~I~~ie-~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~~dvae~l~~~~ 100 (110)
T 1wxp_A 37 PYLEMKDSEIRQIE-CDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDN 100 (110)
T ss_dssp TTTTCCHHHHHHHH-HHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCHHHHHHHHCCC
T ss_pred HHhCCCHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 33444444444444 55556666677777889886644567888999999888877777775543
No 208
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.61 E-value=17 Score=28.36 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=28.8
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCC--CCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKD--IPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~--~P~g~W~C~~C~~ 345 (566)
+..|.+|...-....+ -.|...||..|+..-+.. ...+...||.|..
T Consensus 19 ~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecw_A 19 EVTCPICLELLKEPVS---ADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67 (85)
T ss_dssp TTSCTTTCSCCSSCEE---CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCC
T ss_pred CCCCcCCChhhCccee---CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCC
Confidence 3479999874322222 258888999998533222 1234678888864
No 209
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.98 E-value=36 Score=25.56 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=17.9
Q ss_pred eccCCCCCCcCCCCCCCCCCCCC--------CCcccCCCcc
Q 008421 481 MCDGCDQGYHLYCMDPPRTSVPK--------GNWFCRKCDA 513 (566)
Q Consensus 481 ~Cd~C~~~~H~~Cl~Ppl~~~p~--------~~W~C~~C~~ 513 (566)
.|..|+..|...=-+| ...++. .+|.||.|..
T Consensus 5 ~C~vCGyvYd~~~Gdp-~~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDP-DDGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EETTTCCEECTTTCBG-GGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCeEECCCcCCc-ccCcCCCCChhHCCCCCcCcCCCC
Confidence 5666666665442222 122222 4699999975
No 210
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.26 E-value=20 Score=27.86 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=27.8
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCC--CCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKD--IPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~--~P~g~W~C~~C~~ 345 (566)
...|.+|...-....++ .|...||..|+..-+.. ...+...||.|..
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67 (85)
T ss_dssp CCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCC
T ss_pred CCCCCCCCcccCCceeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCC
Confidence 34799998743322222 68888888887532221 1224567888863
No 211
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.16 E-value=15 Score=27.56 Aligned_cols=46 Identities=17% Similarity=0.539 Sum_probs=29.5
Q ss_pred cccccccccccC----CCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAG----EKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
...|.+|...-. .+..+.--.|.-.||..|+..-+.. ...||.|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~ 64 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRK 64 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCC
Confidence 347999987321 2344456689999999998533222 236888863
No 212
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.13 E-value=83 Score=23.25 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=8.3
Q ss_pred CCcccCCCcc
Q 008421 504 GNWFCRKCDA 513 (566)
Q Consensus 504 ~~W~C~~C~~ 513 (566)
.+|.||.|..
T Consensus 35 ~dw~CP~Cg~ 44 (52)
T 1e8j_A 35 DDWACPVCGA 44 (52)
T ss_dssp TTCCCSSSCC
T ss_pred CCCcCCCCCC
Confidence 4799999975
No 213
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.02 E-value=25 Score=32.61 Aligned_cols=30 Identities=20% Similarity=0.649 Sum_probs=16.7
Q ss_pred cccccccCcccccCCCcccccCCccCCCccccccCCC
Q 008421 413 ANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLT 449 (566)
Q Consensus 413 ~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL~ 449 (566)
...|..|++.+.. +..+ .- .++.||+.|..
T Consensus 7 ~~~C~~C~~~I~~-~~~v-~a-----~g~~wH~~CF~ 36 (192)
T 1b8t_A 7 GKKCGVCQKAVYF-AEEV-QC-----EGSSFHKSCFL 36 (192)
T ss_dssp CEECTTTCCEECS-SCCE-EE-----TTEEECTTTCB
T ss_pred CCcCccCCCeecc-eeEE-Ee-----CCceecCCCCc
Confidence 3567778777643 2222 11 15667777764
No 214
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=1.5e+02 Score=22.85 Aligned_cols=30 Identities=27% Similarity=0.602 Sum_probs=16.5
Q ss_pred cccccccCcccccCCCcccccCCccCCCccccccCC
Q 008421 413 ANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCL 448 (566)
Q Consensus 413 ~~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL 448 (566)
...|..|++.+.. .+.++.-. ++.||+.|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~~~a~-----~~~~H~~CF 44 (82)
T 2ehe_A 15 ANTCAECQQLIGH-DSRELFYE-----DRHFHEGCF 44 (82)
T ss_dssp SCBCTTTCCBCCS-SCCBCCCS-----SCCCBTTTS
T ss_pred CCcCccCCCcccc-CcEEEEeC-----CccccccCC
Confidence 3578888887663 23333221 455666544
No 215
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=21.14 E-value=26 Score=28.85 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=0.0
Q ss_pred ccccccccCCCCceeeccCCCCCCcCCCCCCCCCC
Q 008421 466 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTS 500 (566)
Q Consensus 466 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~ 500 (566)
.|.+|++. ..+-...|..|+-..|+.|...|...
T Consensus 49 ~C~~C~~~-~~~~~Y~C~~C~f~lH~~Ca~~p~~~ 82 (89)
T 1v5n_A 49 TCDKCEEE-GTIWSYHCDECDFDLHAKCALNEDTK 82 (89)
T ss_dssp CCTTTSCC-CCSCEEECTTTCCCCCHHHHHCSSCS
T ss_pred EeCCCCCc-CCCcEEEcCCCCCeEcHHhcCCCCcc
No 216
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.06 E-value=37 Score=26.96 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=28.4
Q ss_pred ccccccccccCCC--CceeeccCCCCCcccccCCCCCCCCCCCccCcccccc
Q 008421 297 HTCRQCEEKAGEK--DGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 346 (566)
Q Consensus 297 ~~C~~C~~~~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 346 (566)
..|.+|...-... .++.| .|.-.|+..|+.--+. .+...||.|...
T Consensus 12 ~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---~~~~~CP~CR~~ 59 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---DENGLCPACRKP 59 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---SSCSBCTTTCCB
T ss_pred CcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---cCCCCCCCCCCc
Confidence 4799998733222 22223 5888888888753322 245789999743
No 217
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=21.02 E-value=37 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=22.2
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCcccCCCcchhH
Q 008421 484 GCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGIQ 516 (566)
Q Consensus 484 ~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~ 516 (566)
.|+..|+..|+..-+. .+...||.|+....
T Consensus 32 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVE---KASLCCPFCRRRVS 61 (115)
T ss_dssp TTSCEECHHHHCCCCC---TTTSBCTTTCCBCH
T ss_pred CCCCHHhHHHHHHHHh---HCcCCCCCCCcccC
Confidence 6888899999876432 34578999987544
No 218
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.70 E-value=51 Score=21.47 Aligned_cols=28 Identities=32% Similarity=0.791 Sum_probs=18.8
Q ss_pred ccccccCcccccCCCcccccCCccCCCccccccCC
Q 008421 414 NLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCL 448 (566)
Q Consensus 414 ~~C~~Cgs~~~~~~~~Ll~C~~~~C~~k~yH~~CL 448 (566)
..|..|++.+.. .+++.. .++.||..|.
T Consensus 4 ~~C~~C~k~Vy~-~Ek~~~------~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYP-TEKVNC------LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCG-GGCCCS------SSSCCCGGGC
T ss_pred CcCCccCCEEec-ceeEEE------CCeEecccCC
Confidence 479999998765 344432 2677888774
No 219
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.62 E-value=74 Score=25.08 Aligned_cols=10 Identities=20% Similarity=0.956 Sum_probs=8.4
Q ss_pred CCcccCCCcc
Q 008421 504 GNWFCRKCDA 513 (566)
Q Consensus 504 ~~W~C~~C~~ 513 (566)
.+|.||.|..
T Consensus 39 ddw~CP~Cga 48 (70)
T 1dx8_A 39 DSFMCPACRS 48 (70)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 4699999975
No 220
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.47 E-value=18 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.478 Sum_probs=27.9
Q ss_pred cccccccccccCCCCceeeccCCCCCcccccCCCCCCCCCCCccCccccc
Q 008421 296 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 345 (566)
Q Consensus 296 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 345 (566)
...|.+|...-.. .--.|...||..|+..-+. ....||.|..
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 56 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSD----RHRNCPICRL 56 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC----CCSSCHHHHH
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHH----CcCcCCCcCC
Confidence 3479999874322 2236888899999864333 3567888863
Done!