BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008422
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 167/546 (30%), Positives = 247/546 (45%), Gaps = 59/546 (10%)
Query: 26 VEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNK-SPYNLTIHWHG 84
VE+ F N C + + +NG PGPTIR + GD+++V + NK + IHWHG
Sbjct: 10 VEYMFWAPN------CNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHG 63
Query: 85 IFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLR-ATVHGALIIR 143
I Q + WADG + I+QC I PG ++ Y F V+ GT ++H H M R A ++G+LI+
Sbjct: 64 ILQRGTPWADGTASISQCAINPGETFFYNF-TVDNPGTFFYHGHLGMQRSAGLYGSLIVD 122
Query: 144 PRSGHKYPFPKPNKEVPIILGEWWNADI----IDVAKQAQATGGGP-------------N 186
P G K PF + E+ ++L +WW+ I + ++ + G P +
Sbjct: 123 PPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCS 181
Query: 187 ISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAI 246
I+ Y N P L Y V KTY +RI + L F I NH VV
Sbjct: 182 IAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEA 241
Query: 247 DACYTEPYVTDVVVIAPGQTTDVLLKADQ-PVGXXXXXXXXXXXXPQIPFDNTTTRGIVV 305
D Y +P+ T + I G++ VL+ DQ P P P T +
Sbjct: 242 DGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPN 301
Query: 306 YDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDR 365
+P P PA++D + F +T G P+ P++ + +F+
Sbjct: 302 SVSKLPTSP-PPQTPAWDDFDRSKNFTYRITAAMGSPK---PPVKFNRRIFLL------- 350
Query: 366 CPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIF--DF 423
T +NG A + PPT L A +N+ F + PP +F D+
Sbjct: 351 ----NTQNVINGYVKWAINDVSLALPPTPY--LGAMKYNLLHAFDQN---PPPEVFPEDY 401
Query: 424 -TNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALV---VLENHPMHVHGFDFHVL 479
+T +N+ + + V K V++ILQN ++ + E HP H+HG DF VL
Sbjct: 402 DIDTPPTNEKTRI----GNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVL 457
Query: 480 AQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWG 539
G G F +A + NL NP RNT+ + GW IRF A+NPGVW HCH++ HL G
Sbjct: 458 GYGDGKF-SAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMG 516
Query: 540 LATAFV 545
+ F
Sbjct: 517 MGVVFA 522
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 148/536 (27%), Positives = 214/536 (39%), Gaps = 93/536 (17%)
Query: 32 VKNLTIGR-------LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLT 79
V +LTI RQ + VN P P I ++GD ++V + + +
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSM-----LRA 134
IHWHG FQ + WADGP+ + QCPI+ G+++ Y F++ +Q GT W+H+H S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTIN 194
+ ++ P+ HK + + I L +W++ A G +DA IN
Sbjct: 123 PI---VVYDPQDPHKSLYDVDDDSTVITLADWYHL--------AAKVGSPVPTADATLIN 171
Query: 195 GRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPY 254
G G + V GK Y R+++ + + F I H+ TV+ D+ +P
Sbjct: 172 GL-GRSIDTLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQ 230
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANP 314
D + I Q +L ADQ VG FD I+ YDGA
Sbjct: 231 TVDSIQIFAAQRYSFVLNADQDVGNYWIRALPNSGTRN--FDGGVNSAILRYDGAA---- 284
Query: 315 LMPVLPAFNDNPTAHRFY-SNLTGLKG-GPQWVPVPLQVDEHMFVTVGLGLDRCPANATC 372
PV P + P+ + S LT L+G P P VD + + G +
Sbjct: 285 --PVEPTTSQTPSTNPLVESALTTLEGTAAPGSPAPGGVDLALNMAFGFAGGKF------ 336
Query: 373 QGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDS 432
++N SF PPT LLQ LS
Sbjct: 337 ----------TINGASFTPPTVPVLLQ---------------------------ILSGAQ 359
Query: 433 SLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDR 492
S SV L N+ +E+ L TA HP H+HG F V+
Sbjct: 360 SAQDLLPSGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVVRSA--------GS 411
Query: 493 QKFNLVNPQRRNTIAVPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
+N NP R+ ++ G V IRFR +NPG WF+HCH+D HL G A +
Sbjct: 412 STYNYENPVYRDVVSTGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAED 467
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 152/517 (29%), Positives = 211/517 (40%), Gaps = 91/517 (17%)
Query: 49 VNGSLPGPTIRVHEGD--------TLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMIT 100
VNG P P I +GD TL H KS +IHWHG FQ + WADGP+ +
Sbjct: 27 VNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKS---TSIHWHGFFQAGTNWADGPAFVN 83
Query: 101 QCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPFPKPNKE 158
QCPI G+S+ Y F + +Q GT W+H+H S + G ++ P+ H + N+
Sbjct: 84 QCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDNES 143
Query: 159 VPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKT 218
I L +W++ A+ P +DA ING G + V+ GK
Sbjct: 144 TVITLTDWYH-------TAARLGPRFPLGADATLINGL-GRSASTPTAALAVINVQHGKR 195
Query: 219 YLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVG 278
Y R+++ + + F I HN TV+ +D ++P + D + I Q +L A+Q VG
Sbjct: 196 YRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNANQTVG 255
Query: 279 XXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANP----LMPVLPAFNDNPTAHRFYSN 334
+ F I+ Y GA A P V+P +N
Sbjct: 256 NYWIRANPNFGT--VGFAGGINSAILRYQGAPVAEPTTTQTTSVIPLIE---------TN 304
Query: 335 LTGLKGGP-QWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPT 393
L L P P P VD+ A N + +NN SF PPT
Sbjct: 305 LHPLARMPVPGSPTPGGVDK----------------ALNLAFNFNGTNFFINNASFTPPT 348
Query: 394 SLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVE 453
LLQ I TA LL A SV PL +ST+E
Sbjct: 349 VPVLLQ--------------------ILSGAQTA----QDLLPA---GSVYPLPAHSTIE 381
Query: 454 MILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIA--VPVG 511
+ L TAL HP H+HG F V+ +N +P R+ ++ P
Sbjct: 382 ITLPATALAPGAPHPFHLHGHAFAVVRSA--------GSTTYNYNDPIFRDVVSTGTPAA 433
Query: 512 GWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
G V IRF+ +NPG WF+HCH+D HL G A F +
Sbjct: 434 GDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAED 470
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 217/509 (42%), Gaps = 77/509 (15%)
Query: 49 VNGSLPGPTIRVHEGDTLIVHVFNK--SPYNL---TIHWHGIFQLLSAWADGPSMITQCP 103
VNG + GP IR + D ++V N +P L +IHWHG+FQ + WADG + QCP
Sbjct: 28 VNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCP 86
Query: 104 ITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRPRSG-HKYPFPKPNKEVPI 161
I+PG+++ YKF GT W+H+HF + G ++I + H + + ++ I
Sbjct: 87 ISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTII 146
Query: 162 ILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLL 221
L +W++ + AQ DA ING+ G + + VE GK Y +
Sbjct: 147 TLADWYHIPAPSIQGAAQ--------PDATLINGK-GRYVGGPAAELSIVNVEQGKKYRM 197
Query: 222 RIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGXXX 281
R+I+ + + F I H T++ +D TEP+ D + I GQ +L A+QPV
Sbjct: 198 RLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYW 257
Query: 282 XXXXXXXXXPQIP--FDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLK 339
+ F N I+ Y GA A+P + N NP +
Sbjct: 258 IRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTT----SANPNPAQLNEADLHALID 313
Query: 340 GGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQ 399
+P P D ++ +G R N T +++ P+ +LLQ
Sbjct: 314 PAAPGIPTPGAADVNLRFQLGFSGGRFTINGT----------------AYESPSVPTLLQ 357
Query: 400 AFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNT 459
+ + + LL A SV L N VE+++
Sbjct: 358 IM------------------------SGAQSANDLLPA---GSVYELPRNQVVELVV--P 388
Query: 460 ALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAV-IRF 518
A V+ HP H+HG F V+ + +N VNP +R+ +++ V G V IRF
Sbjct: 389 AGVLGGPHPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRF 440
Query: 519 RANNPGVWFMHCHLDVHLPWGLATAFVVE 547
+NPG WF HCH++ HL GLA F +
Sbjct: 441 VTDNPGPWFFHCHIEFHLMNGLAIVFAED 469
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 217/509 (42%), Gaps = 77/509 (15%)
Query: 49 VNGSLPGPTIRVHEGDTLIVHVFNK--SPYNL---TIHWHGIFQLLSAWADGPSMITQCP 103
VNG + GP IR + D ++V N +P L +IHWHG+FQ + WADG + QCP
Sbjct: 28 VNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCP 86
Query: 104 ITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRPRSG-HKYPFPKPNKEVPI 161
I+PG+++ YKF GT W+H+HF + G ++I + H + + ++ I
Sbjct: 87 ISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTII 146
Query: 162 ILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLL 221
L +W++ + AQ DA ING+ G + + VE GK Y +
Sbjct: 147 TLADWYHIPAPSIQGAAQ--------PDATLINGK-GRYVGGPAAELSIVNVEQGKKYRM 197
Query: 222 RIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGXXX 281
R+I+ + + F I H T++ +D TEP+ D + I GQ +L A+QPV
Sbjct: 198 RLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYW 257
Query: 282 XXXXXXXXXPQIP--FDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLK 339
+ F N I+ Y GA A+P + N NP +
Sbjct: 258 IRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTT----SANPNPAQLNEADLHALID 313
Query: 340 GGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQ 399
+P P D ++ +G R N T +++ P+ +LLQ
Sbjct: 314 PAAPGIPTPGAADVNLRFQLGFSGGRFTINGT----------------AYESPSVPTLLQ 357
Query: 400 AFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNT 459
+ + + LL A SV L N VE+++
Sbjct: 358 IM------------------------SGAQSANDLLPA---GSVYELPRNQVVELVV--P 388
Query: 460 ALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAV-IRF 518
A V+ HP H+HG F V+ + +N VNP +R+ +++ V G V IRF
Sbjct: 389 AGVLGGPHPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRF 440
Query: 519 RANNPGVWFMHCHLDVHLPWGLATAFVVE 547
+NPG WF HCH++ HL GLA F +
Sbjct: 441 VTDNPGPWFFHCHIEFHLMNGLAIVFAED 469
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 152/519 (29%), Positives = 222/519 (42%), Gaps = 79/519 (15%)
Query: 40 LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLTIHWHGIFQLLSAWAD 94
RQ + VNG PGP + + GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPF 152
GP+ I QCPI+PG+S+ Y F++ +Q GT W+H+H S + G ++ P H +
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLK 212
N + I L +W++ AK GG +DA ING+ G S + +K
Sbjct: 138 DVDNDDTVITLADWYHT----AAKLGPRFPGG---ADATLINGK-GRAPSDSVAELSVIK 189
Query: 213 VETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLK 272
V GK Y R+++ + N F I HN T++ +D+ ++P D + I Q +L
Sbjct: 190 VTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLD 249
Query: 273 ADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFY 332
A+Q V + FD I+ YDGA P
Sbjct: 250 ANQAVDNYWIRANPNFG--NVGFDGGINSAILRYDGAPAVEPTT---------------- 291
Query: 333 SNLTGLKGGPQWVPVPL-QVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQP 391
+ T +K PL +VD H V+ + P + + GV+ N A N S
Sbjct: 292 NQTTSVK--------PLNEVDLHPLVSTPV-----PGSPSSGGVDKAINMAFNFNGS--- 335
Query: 392 PTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNST 451
FF N G F P P P L+ + + D LL SV L N++
Sbjct: 336 --------NFFIN-GASFVP--PTVPVLLQILSGAQTAQD--LL---PSGSVYVLPSNAS 379
Query: 452 VEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIA--VP 509
+E+ TA HP H+HG F V+ + +N NP R+ ++ P
Sbjct: 380 IEISFPATAAAPGAPHPFHLHGHTFAVV--------RSAGSTVYNYDNPIFRDVVSTGTP 431
Query: 510 VGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
G V IRF NNPG WF+HCH+D HL G A +
Sbjct: 432 AAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAED 470
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 152/519 (29%), Positives = 221/519 (42%), Gaps = 79/519 (15%)
Query: 40 LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLTIHWHGIFQLLSAWAD 94
RQ + VNG PGP + + GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPF 152
GP+ I QCPI+PG+S+ Y F++ +Q GT W+H+H S + G ++ P H +
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLK 212
N + I L +W++ AK GG +DA ING+ G S + +K
Sbjct: 138 DVDNDDTVITLADWYHT----AAKLGPRFPGG---ADATLINGK-GRAPSDSVAELSVIK 189
Query: 213 VETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLK 272
V GK Y R+++ + N F I HN T++ +D+ ++P D + I Q +L
Sbjct: 190 VTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLD 249
Query: 273 ADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFY 332
A+Q V + FD I+ YDGA P
Sbjct: 250 ANQAVDNYWIRANPNFG--NVGFDGGINSAILRYDGAPAVEPTT---------------- 291
Query: 333 SNLTGLKGGPQWVPVPL-QVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQP 391
+ T +K PL +VD H V+ + P + GV+ N A N S
Sbjct: 292 NQTTSVK--------PLNEVDLHPLVSTPV-----PGAPSSGGVDKAINMAFNFNGS--- 335
Query: 392 PTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNST 451
FF N G F P P P L+ + + D LL SV L N++
Sbjct: 336 --------NFFIN-GASFVP--PTVPVLLQILSGAQTAQD--LL---PSGSVYVLPSNAS 379
Query: 452 VEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIA--VP 509
+E+ TA HP H+HG F V+ + +N NP R+ ++ P
Sbjct: 380 IEISFPATAAAPGAPHPFHLHGHTFAVV--------RSAGSTVYNYDNPIFRDVVSTGTP 431
Query: 510 VGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
G V IRF NNPG WF+HCH+D HL G A +
Sbjct: 432 AAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAED 470
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 147/530 (27%), Positives = 214/530 (40%), Gaps = 93/530 (17%)
Query: 32 VKNLTIGR-------LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLT 79
V +LTI RQ + VN P P I ++GD ++V + + +
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSM-----LRA 134
IHWHG FQ + WADGP+ + QCPI+ G+++ Y F++ +Q GT W+H+H S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTIN 194
+ ++ P H + + I L +W++ A G +DA IN
Sbjct: 123 PI---VVYDPNDPHASLYDVDDDSTVITLADWYH--------LAAKVGAPVPTADATLIN 171
Query: 195 GRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPY 254
G G + V GK Y R+++ + + F I H+ TV+ D+ +P+
Sbjct: 172 GL-GRSAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPH 230
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANP 314
D + I Q +L ADQ V F T I+ YDGA
Sbjct: 231 TVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQN--FAGGTNSAILRYDGAA---- 284
Query: 315 LMPVLPAFNDNPTAHRFY-SNLTGLKG-GPQWVPVPLQVDEHMFVTVGLGLDRCPANATC 372
PV P + P+ + S LT LKG P P VD + + G
Sbjct: 285 --PVEPTTSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFA---------- 332
Query: 373 QGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDS 432
+ ++N SF PPT LLQ + + +
Sbjct: 333 ------GGNFTINGASFTPPTVPVLLQIL------------------------SGAQSAA 362
Query: 433 SLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDR 492
LL A SV L N+ +E+ L TA HP H+HG F V+
Sbjct: 363 DLLPA---GSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVRSA--------GS 411
Query: 493 QKFNLVNPQRRNTIAVPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLA 541
+N NP R+ ++ G V IRFR +NPG WF+HCH+D HL G A
Sbjct: 412 STYNYANPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 147/530 (27%), Positives = 214/530 (40%), Gaps = 93/530 (17%)
Query: 32 VKNLTIGR-------LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLT 79
V +LTI RQ + VN P P I ++GD ++V + + +
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSM-----LRA 134
IHWHG FQ + WADGP+ + QCPI+ G+++ Y F++ +Q GT W+H+H S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTIN 194
+ ++ P H + + I L +W++ A G +DA IN
Sbjct: 123 PI---VVYDPNDPHASLYDVDDDSTVITLADWYH--------LAAKVGAPVPTADATLIN 171
Query: 195 GRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPY 254
G G + V GK Y R+++ + + F I H+ TV+ D+ +P+
Sbjct: 172 GL-GRSAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPH 230
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANP 314
D + I Q +L ADQ V F T I+ YDGA
Sbjct: 231 TVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQN--FAGGTNSAILRYDGAA---- 284
Query: 315 LMPVLPAFNDNPTAHRFY-SNLTGLKG-GPQWVPVPLQVDEHMFVTVGLGLDRCPANATC 372
PV P + P+ + S LT LKG P P VD + + G
Sbjct: 285 --PVEPTTSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFA---------- 332
Query: 373 QGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDS 432
+ ++N SF PPT LLQ + + +
Sbjct: 333 ------GGNFTINGASFTPPTVPVLLQIL------------------------SGAQSAA 362
Query: 433 SLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDR 492
LL A SV L N+ +E+ L TA HP H+HG F V+
Sbjct: 363 DLLPA---GSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVRSA--------GS 411
Query: 493 QKFNLVNPQRRNTIAVPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLA 541
+N NP R+ ++ G V IRFR +NPG WF+HCH+D HL G A
Sbjct: 412 STYNYANPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 141/508 (27%), Positives = 210/508 (41%), Gaps = 78/508 (15%)
Query: 51 GSLPGPTIRVHEGDTLIVHVFNK-----SPYNLTIHWHGIFQLLSAWADGPSMITQCPIT 105
G+ PGP I + GD + FN+ + +IHWHG FQ + WADGP+ ITQCPI
Sbjct: 30 GTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPII 89
Query: 106 PGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPFPKPNKEVPIIL 163
GNS++Y F + GT W+H+H + + G ++ P + + I L
Sbjct: 90 VGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITL 149
Query: 164 GEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRI 223
+W++ +AK+ A GG +D+ I+G + + VE GK Y +R+
Sbjct: 150 ADWYHV----LAKEMGA--GGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRL 203
Query: 224 INAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGXXXXX 283
++ + + F I H+ T++ D ++ D + I Q +L A+QPVG
Sbjct: 204 VSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIR 263
Query: 284 XXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLKGGPQ 343
FD I+ YDGATTA+P+ A ++
Sbjct: 264 ANPNSGGEG--FDGGINSAILRYDGATTADPVT----------VASTVHTKCL------- 304
Query: 344 WVPVPLQVDEHMFVTVGLGLDRCPANATCQ---GVNGQRNSASMNNHSFQPPTSLSLLQA 400
++ D H G+ + A C + + +N SF PPT LLQ
Sbjct: 305 -----IETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQ- 358
Query: 401 FFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTA 460
I NTA + LL SV L NST+E+ L A
Sbjct: 359 -------------------ICSGANTA----ADLL---PSGSVISLPSNSTIEIALP--A 390
Query: 461 LVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAV-PVGGWAVIRFR 519
HP H+HG DF V + N +P R+ +++ VG IRF
Sbjct: 391 GAAGGPHPFHLHGHDFAV--------SESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFC 442
Query: 520 ANNPGVWFMHCHLDVHLPWGLATAFVVE 547
+NPG WF+HCH+D HL G A F +
Sbjct: 443 TDNPGPWFLHCHIDWHLDAGFAIVFAED 470
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 148/517 (28%), Positives = 220/517 (42%), Gaps = 87/517 (16%)
Query: 40 LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT---------IHWHGIFQLLS 90
RQ + VNG PGP + + GD ++V + NLT +HWHG FQ +
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVID----NLTNHTMLKTTSVHWHGFFQQGT 73
Query: 91 AWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGH 148
WADGP+ I QCPI+PG+S+ Y F++ NQ GT W+H+H S + G ++ P H
Sbjct: 74 NWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPH 133
Query: 149 KYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQT 208
+ N + I L +W++ A+ P +DA ING+ G + +
Sbjct: 134 ASRYDVDNDDTVITLADWYH-------TAAKLGPRFPAGADATLINGK-GRAPSDTSAEL 185
Query: 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTD 268
+KV GK R+++ + + F I HN T++ +D+ ++P D + I Q
Sbjct: 186 SVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYS 245
Query: 269 VLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTA 328
+L A+Q V + F+ I+ YDGA P
Sbjct: 246 FVLNANQAVDNYWIRANPNFG--NVGFNGGINSAILRYDGAPAVEPTT------------ 291
Query: 329 HRFYSNLTGLKGGPQWVPVPL-QVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNH 387
+ T +K PL +V+ H V+ + P + + GV+ N A N
Sbjct: 292 ----NQTTSVK--------PLNEVNLHPLVSTPV-----PGSPSSGGVDKAINMAFNFNG 334
Query: 388 SFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLK 447
S FF N G F P P P L+ + + D LL SV L
Sbjct: 335 S-----------NFFIN-GASFVP--PSVPVLLQILSGAQTAQD--LL---PSGSVXVLP 375
Query: 448 FNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIA 507
N+++E+ TA HP H+HG F V+ + +N NP R+ ++
Sbjct: 376 SNASIEISFPATAAAPGAPHPFHLHGHTFAVV--------RSAGSTVYNYSNPIFRDVVS 427
Query: 508 --VPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLA 541
P G V IRF NNPG WF+HCH+D HL G A
Sbjct: 428 TGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 152/516 (29%), Positives = 216/516 (41%), Gaps = 85/516 (16%)
Query: 40 LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT---------IHWHGIFQLLS 90
RQ + VNG PGP + + GD ++V + NLT +HWHG FQ +
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVID----NLTNHTMLKTTSVHWHGFFQQGT 73
Query: 91 AWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGH 148
WADGP+ I QCPI+PG+S+ Y F++ NQ GT W+H+H S + G ++ P H
Sbjct: 74 NWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPH 133
Query: 149 KYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQT 208
+ N + I L +W++ AK A PN +D+ ING+ G S Q
Sbjct: 134 ASRYDVDNDDTTITLADWYHT----AAKLGPAF---PNGADSTLINGK-GRAPSDSSAQL 185
Query: 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTD 268
+ V GK R+++ + + F I HN T++ D+ ++P TD + I Q
Sbjct: 186 SVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYS 245
Query: 269 VLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTA 328
L A+Q V + F+ I+ YDGA P N +
Sbjct: 246 FTLNANQAVDNYWIRANPNFG--NVGFNGGINSAILRYDGAPAVEPTT--------NQST 295
Query: 329 HRFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHS 388
N T L H V+ + P + GV+ N A N S
Sbjct: 296 STQPLNETNL---------------HPLVSTPV-----PGSPAAGGVDKAINMAFNFNGS 335
Query: 389 FQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKF 448
FF N G FTP P P L+ + + D LL SV L
Sbjct: 336 -----------NFFIN-GASFTP--PSVPVLLQILSGAQTAQD--LL---PSGSVXTLPS 376
Query: 449 NSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIA- 507
N+++E+ TA HP H+HG F V+ + +N NP R+ ++
Sbjct: 377 NASIEISFPATAAAPGAPHPFHLHGHVFAVV--------RSAGSTVYNYSNPIFRDVVST 428
Query: 508 -VPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLA 541
P G V IRF NNPG WF+HCH+D HL G A
Sbjct: 429 GTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 143/512 (27%), Positives = 211/512 (41%), Gaps = 83/512 (16%)
Query: 49 VNGSLPGPTIRVHEGDTLIVHVFNKSPYNL-----TIHWHGIFQLLSAWADGPSMITQCP 103
VNG P P I ++GD ++V ++ + +IHWHG FQ + WADGP+ + QCP
Sbjct: 27 VNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQCP 86
Query: 104 ITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPFPKPNKEVPI 161
I G+S+ Y F++ +Q GT W+H+H S + G ++ P H + N + I
Sbjct: 87 IASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDNDDTVI 146
Query: 162 ILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLL 221
L +W++ A+ P SD+ ING G + + +KV GK Y
Sbjct: 147 TLADWYHV-------AAKLGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKVTQGKRYRF 198
Query: 222 RIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGXXX 281
R+++ + + F I NH T++ D+ T+P D + I Q +L A QPV
Sbjct: 199 RLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDASQPVDNYW 258
Query: 282 XXXXXXXXXPQIPFDNTTTRG-----IVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLT 336
F NT G I+ YDGA P + PT +L
Sbjct: 259 IRANPA-------FGNTGFAGGINSAILRYDGAPEIEPT-----SVQTTPTKPLNEVDLH 306
Query: 337 GLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLS 396
L +PVP + G+D+ P N N + +N+H+F PP+
Sbjct: 307 PLSP----MPVPGSPEPG-------GVDK-PLNLV---FNFNGTNFFINDHTFVPPSVPV 351
Query: 397 LLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMIL 456
LLQ LS + SV L NS++E+
Sbjct: 352 LLQ---------------------------ILSGAQAAQDLVPEGSVFVLPSNSSIEISF 384
Query: 457 QNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAV- 515
TA HP H+HG F V+ + +N NP R+ ++ G V
Sbjct: 385 PATANAPGFPHPFHLHGHAFAVV--------RSAGSSVYNYDNPIFRDVVSTGQPGDNVT 436
Query: 516 IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
IRF NNPG WF+HCH+D HL G A +
Sbjct: 437 IRFETNNPGPWFLHCHIDFHLDAGFAVVMAED 468
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 139/517 (26%), Positives = 205/517 (39%), Gaps = 92/517 (17%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLTIHWHGIFQLLSAWADGPS 97
++ VN P P I + GD +++ N+ +IHWHG FQ + WADGP+
Sbjct: 21 ERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPA 80
Query: 98 MITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPFPKP 155
I QCPI GNS+ Y F++ Q GT W+H+H S + G ++ P H +
Sbjct: 81 FINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVD 140
Query: 156 NKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVET 215
++ I L +W++ A+ P +D+ ING G + V
Sbjct: 141 DESTVITLADWYHV-------AAKLGPRFPKGADSTLINGL-GRSTSTPTADLAVISVTK 192
Query: 216 GKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQ 275
GK Y R+++ + + F I +H TV+ D T+P D + I Q +L A+Q
Sbjct: 193 GKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQ 252
Query: 276 PVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNL 335
V F + I+ YD A+P+ PV +N
Sbjct: 253 DVDNYWIRANPNFGT--TGFADGVNSAILRYDD---ADPVEPV--------------TNQ 293
Query: 336 TGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSA--------SMNNH 387
TG + L+ D H ++ + P N T G + N A +N
Sbjct: 294 TGTT-------LLLETDLHPLTSMPV-----PGNPTQGGADLNLNMAFNFDGTNFFINGE 341
Query: 388 SFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLK 447
SF PPT LLQ I NTA LL SV L
Sbjct: 342 SFTPPTVPVLLQ--------------------IISGANTA----QDLL---PSGSVYSLP 374
Query: 448 FNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIA 507
NS++E+ T HP H+HG F V+ + +N +P R+ ++
Sbjct: 375 SNSSIEITFPATTAAPGAPHPFHLHGHVFAVV--------RSAGSTSYNYDDPVWRDVVS 426
Query: 508 V---PVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLA 541
G IRF+ +NPG WF+HCH+D HL G A
Sbjct: 427 TGTPQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFA 463
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 145/527 (27%), Positives = 209/527 (39%), Gaps = 95/527 (18%)
Query: 40 LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLTIHWHGIFQLLSAWAD 94
RQ + VNG PGP I + GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWAD 77
Query: 95 GPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPF 152
GP+ I QCPI+ G+S+ Y F++ +Q GT W+H+H S + G ++ P +
Sbjct: 78 GPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLY 137
Query: 153 PKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLK 212
N + I L +W++ AK A P +DA ING+ G + +
Sbjct: 138 DVDNDDTVITLVDWYHV----AAKLGPAF---PLGADATLINGK-GRSPSTTTADLSVIS 189
Query: 213 VETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLK 272
V GK Y R+++ + + F I HN T++ D+ T P V D + I Q +L+
Sbjct: 190 VTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLE 249
Query: 273 ADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFY 332
A+Q V + F I+ YDGA P +
Sbjct: 250 ANQAVDNYWIRANPNFG--NVGFTGGINSAILRYDGAAAVEPTTTQTTST---------- 297
Query: 333 SNLTGLKGGPQWVPVPL-QVDEHMFVTVGLGLDRCPANATCQGVNGQRNSA--------S 383
PL +V+ H V + P + GV+ N A
Sbjct: 298 --------------APLNEVNLHPLVATAV-----PGSPVAGGVDLAINMAFNFNGTNFF 338
Query: 384 MNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSV 443
+N SF PPT LLQ + N LL SV
Sbjct: 339 INGASFTPPTVPVLLQII------------------------SGAQNAQDLL---PSGSV 371
Query: 444 KPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRR 503
L N+ +E+ TA HP H+HG F V+ +N NP R
Sbjct: 372 YSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSA--------GSTVYNYDNPIFR 423
Query: 504 NTIA--VPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
+ ++ P G V IRFR +NPG WF+HCH+D HL G A F +
Sbjct: 424 DVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAED 470
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 128/474 (27%), Positives = 192/474 (40%), Gaps = 71/474 (14%)
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VH 137
+IHWHG FQ + DGP+ + QCPI P S+ Y F + Q GT W+H+H S +
Sbjct: 83 SIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLR 142
Query: 138 GALII-RPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGR 196
GA ++ P H + + I + +W+++ + D ING
Sbjct: 143 GAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTVLFPNPNKAP---PAPDTTLINGL 199
Query: 197 PGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVT 256
+ S Q + V++GK Y RI++ + F I H TV+ +D +P
Sbjct: 200 GRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTV 259
Query: 257 DVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLM 316
D + I GQ V+++A+Q VG + F I Y GA A P
Sbjct: 260 DSLTIFAGQRYSVVVEANQAVGNYWIRANPSNG--RNGFTGGINSAIFRYQGAAVAEPTT 317
Query: 317 PVLPAFNDNPTAHRFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVN 376
++ TA + + + G PVP D ++ + +G NAT
Sbjct: 318 S-----QNSGTALNEANLIPLINPGAPGNPVPGGADINLNLRIG-------RNATTADF- 364
Query: 377 GQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLF 436
++N F PPT LLQ + ++N + LL
Sbjct: 365 ------TINGAPFIPPTVPVLLQIL------------------------SGVTNPNDLL- 393
Query: 437 APKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAAR--DRQK 494
+V L N +E+ + NHP H+HG NFD R
Sbjct: 394 --PGGAVISLPANQVIEISIPGGG-----NHPFHLHGH----------NFDVVRTPGSSV 436
Query: 495 FNLVNPQRRNTIAVPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
+N VNP RR+ +++ GG V RF +NPG WF+HCH+D HL GLA F +
Sbjct: 437 YNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAED 490
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 148 bits (373), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 144/531 (27%), Positives = 221/531 (41%), Gaps = 94/531 (17%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT-IHWHGIFQLLSAWADGPSMITQ 101
+ + VN + GPTIR + GD + V V N N T +HWHG+ QL + + DG + +T+
Sbjct: 95 KNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTE 154
Query: 102 CPITP-GNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRPRSGHKYPFPKPNKEV 159
CPI P G TYKFR Q GT W+H+HFS V G + I + P+
Sbjct: 155 CPIPPKGGRKTYKFR-ATQYGTSWYHSHFSAQYGNGVVGTIQIDGPA--SLPYDIDLGVF 211
Query: 160 PIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYP-CSQNQTYTLKVETGKT 218
P++ + +AD ++ Q+ G P SD NG +P Q Y + + GK
Sbjct: 212 PLMDYYYRSAD--ELVHFTQSNGAPP--SDNVLFNGTA--RHPETGAGQWYNVTLTPGKR 265
Query: 219 YLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVG 278
+ LRIIN + +N + HN TV+A D + + +A GQ DV + A+ PVG
Sbjct: 266 HRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPVG 325
Query: 279 XXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGL 338
F+ T G+ + ++F + +
Sbjct: 326 NYW-------------FNVTFGDGLC--------------------GSSNNKFPAAIFRY 352
Query: 339 KGGPQWVPVP--LQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLS 396
+G P +P L V HM C N V SA +NN +P +L
Sbjct: 353 QGAPATLPTDQGLPVPNHM----------CLDNLNLTPV--VTRSAPVNNFVKRPSNTLG 400
Query: 397 LLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSS---LLFAPKRTSVKPLKFNSTVE 453
+ ++GG P ++ +A++ D L + + P+ N
Sbjct: 401 VT----LDIGGT--------PLFVWKVNGSAINVDWGKPILDYVMSGNTSYPVSDNIVQV 448
Query: 454 MILQNTALVVLENHP----------MHVHGFDFHVLAQGFGN---------FDAARDRQK 494
+ ++EN P MH+HG DF VL + FD A+D +
Sbjct: 449 DAVDQWTYWLIENDPTNPIVSLPHPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPR 508
Query: 495 FNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFV 545
NP RR+ +P GGW ++ F+ +NPG W HCH+ H+ GL+ F+
Sbjct: 509 LKGNNPVRRDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 137/531 (25%), Positives = 204/531 (38%), Gaps = 85/531 (16%)
Query: 32 VKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT---------IHW 82
V N + + VNG PGP I ++GD ++V N NLT +HW
Sbjct: 10 VTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVIN----NLTNFTMLKSTSVHW 65
Query: 83 HGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRATVHGA--L 140
HG FQ + WADGP+ + QCPI G+S+ Y F Q GT W+H+H S +
Sbjct: 66 HGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFV 125
Query: 141 IIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDL 200
+ P + N I L +W++ A+ A GG +DA ING+ G
Sbjct: 126 VYDPNDPSANLYDVDNLNTVITLTDWYHT----AAQNGPAKPGG---ADATLINGQ-GRG 177
Query: 201 YPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVV 260
+ V GK Y R+++ + + F I H T++ +D+ +P V +
Sbjct: 178 PSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQ 237
Query: 261 IAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANPLMPVLP 320
I Q +L A+Q V + F N I+ Y GA P
Sbjct: 238 IYAAQRYSFILNANQAVNNYWIRANPNQG--NVGFTNGINSAILRYSGAAATQPTT---- 291
Query: 321 AFNDNPTAHRFYSNLTGLKGGPQWVPVPL-QVDEHMFVTVGLGLDRCPANATCQGVNGQR 379
S + ++ PL Q + H + P + GVN
Sbjct: 292 ------------SQTSSVQ--------PLDQTNLHPLTATAV-----PGSPVAGGVN--- 323
Query: 380 NSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPK 439
L++ QAF FN F PP + + +S S
Sbjct: 324 ---------------LAINQAFNFNGTNHFVDGASFVPPTV-PVLSQIVSGAQSAADLLA 367
Query: 440 RTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVN 499
V L ++ +E+ T+ HP H+HG F V+ + +N +
Sbjct: 368 SGLVYSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVV--------RSAGSTTYNYND 419
Query: 500 PQRRNTIA--VPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
P R+T++ P V IRF+ NNPG WF+HCH+D HL G A F +
Sbjct: 420 PIFRDTVSTGTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVFAQD 470
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/513 (27%), Positives = 217/513 (42%), Gaps = 83/513 (16%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFN-KSPYNLTIHWHGIFQLLSAWADGPSMIT 100
+ + + NG P P I V++GD + +++ N + N ++H+HG+FQ +A DG +T
Sbjct: 20 KSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLT 79
Query: 101 QCPITPGNSYTYKFRIVNQEGTLWWHAHFS-MLRATVHGALIIRPRSGHKYPFPKPNKEV 159
QCPI PG++ Y F + GT W+H+H + G II+ S +P+ ++E+
Sbjct: 80 QCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDS---FPYDY-DEEL 135
Query: 160 PIILGEWWNADIIDVAKQAQA----TGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVET 215
+ L EW++ + D+ K + TG P P +L + T +V+
Sbjct: 136 SLSLSEWYHDLVTDLTKSFMSVYNPTGAEP----------IPQNLI-VNNTMNLTWEVQP 184
Query: 216 GKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLL--KA 273
TYLLRI+N +F I +H TVV ID TE VTD++ I Q VL+ K
Sbjct: 185 DTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKN 244
Query: 274 DQPVGXXXXXXXXXXXXPQIPFD---NTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHR 330
D IP D N T+ + A + + F D+
Sbjct: 245 DTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQP 304
Query: 331 FYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQ 390
+ + G P V +TV + +D GVN
Sbjct: 305 YEKE--AIYGEPDHV-----------ITVDVVMDNLK-----NGVN-------------- 332
Query: 391 PPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNS 450
AFF N+ T P P L+ ++ +N+S + + T + L+ +
Sbjct: 333 --------YAFFNNI----TYTAPKVPTLMTVLSSGDQANNSEIYGSNTHTFI--LEKDE 378
Query: 451 TVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDR-QKFNLVN-------PQR 502
VE++L N HP H+HG F + + DA + F+ N P R
Sbjct: 379 IVEIVLNNQDTGT---HPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMR 435
Query: 503 RNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVH 535
R+T+ V VIRF+A+NPGVWF HCH++ H
Sbjct: 436 RDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 23/300 (7%)
Query: 27 EHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT-IHWHGI 85
E+ V+N TI ++ NG++PGP I GD LI+HV N +N T IHWHGI
Sbjct: 69 EYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGI 128
Query: 86 FQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRP 144
QL S DG +TQCPI PG++ TYKF+ V Q GT W+H+HFS+ + G LII
Sbjct: 129 RQLGSLEYDGVPGVTQCPIAPGDTLTYKFQ-VTQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 145 RSGHKYPFPKPNKEVPII-LGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPC 203
+ Y +++V +I L +W + + ++ A+ G P + +NG + + C
Sbjct: 188 PATADY-----DEDVGVIFLQDWAHESVFEIWDTARL--GAPPALENTLMNGT--NTFDC 238
Query: 204 SQN---------QTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPY 254
S + + + L G Y LR+IN +++ F I NH TV+A D PY
Sbjct: 239 SASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPY 298
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANP 314
TD ++I GQ DV+++A+ + GI+ YD ++ ANP
Sbjct: 299 TTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTC-STNNEAANATGILRYDSSSIANP 357
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
HP+H+HG DF ++AQ F++ KFNLVNP RR+ A+P G+ I F+ +NPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 527 FMHCHLDVHLPWGLATAFV 545
+HCH+ H GLA FV
Sbjct: 523 LLHCHIAWHASEGLAMQFV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 23/300 (7%)
Query: 27 EHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT-IHWHGI 85
E+ V+N TI ++ NG++PGP I GD LI+HV N +N T IHWHGI
Sbjct: 69 EYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGI 128
Query: 86 FQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRP 144
QL S DG +TQCPI PG++ TYKF+ V Q GT W+H+HFS+ + G LII
Sbjct: 129 RQLGSLEYDGVPGVTQCPIAPGDTLTYKFQ-VTQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 145 RSGHKYPFPKPNKEVPII-LGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPC 203
+ Y +++V +I L +W + + ++ A+ G P + +NG + + C
Sbjct: 188 PATADY-----DEDVGVIFLQDWAHESVFEIWDTARL--GAPPALENTLMNGT--NTFDC 238
Query: 204 SQN---------QTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPY 254
S + + + L G Y LR+IN +++ F I NH TV+A D PY
Sbjct: 239 SASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPY 298
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGATTANP 314
TD ++I GQ DV+++A+ + GI+ YD ++ ANP
Sbjct: 299 TTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTC-STNNEAANATGILRYDSSSIANP 357
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
HP+H+HG DF ++AQ F++ KFNLVNP RR+ A+P G+ I F+ +NPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 527 FMHCHLDVHLPWGLATAFV 545
+HCH+ H G+A FV
Sbjct: 523 LLHCHIAWHASEGMAMQFV 541
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 15/235 (6%)
Query: 50 NGSLPGPTIRVHEGDTLIVHVFNKSP-----YNLTIHWHGIFQLLSAWADGPSMITQCPI 104
NG PGP I ++GD ++V + TIHWHG+FQ + WADGP+ + QCPI
Sbjct: 28 NGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPAFVNQCPI 87
Query: 105 TPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALII-RPRSGHKYPFPKPNKEVPII 162
GNS+ Y F + +Q GT W+H+H S + G L++ P + + + I
Sbjct: 88 ASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPSDPYASMYDVDDDTTVIT 147
Query: 163 LGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLR 222
L +W++ AK A P +D+ ING G + + + VE K Y R
Sbjct: 148 LSDWYHT----AAKLGPAF---PPNADSVLINGL-GRFAGGNASDLAVITVEQNKRYRFR 199
Query: 223 IINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPV 277
+++ + + F I HN T++ +D EP D + I Q +L A Q V
Sbjct: 200 LVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQRYSFVLNATQSV 254
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 442 SVKPLKFNSTVEMILQNTALVVLEN-----HPMHVHGFDFHVLAQGFGNFDAARDRQKFN 496
SV L NST+E+ T + + N HP H+HG F V+ +N
Sbjct: 370 SVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVRSA--------GSSDYN 421
Query: 497 LVNPQRRNTIAVPVGGWAV-IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547
VNP RR+T++ G V IRF +N G WF+HCH+D HL G A F +
Sbjct: 422 YVNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAED 473
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 31/240 (12%)
Query: 48 AVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPG 107
A NG +P P I V EGD + V+V N + TIHWHG+ Q + +DG TQ I PG
Sbjct: 26 AFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPG 85
Query: 108 NSYTYKFRIVNQEGTLWWHAHFSM-----LRATVHGALIIRPRSGHKYPFPKPN---KEV 159
+++TYKF+ GT+W+H H ++ +R + G LI+ P++ P P K+
Sbjct: 86 DTFTYKFK-AEPAGTMWYHCHVNVNEHVTMRG-MWGPLIVEPKN----PLPIEKTVTKDY 139
Query: 160 PIILGEWWNADIIDVAKQAQATGGGP-NISDAYTINGRPGDLYPCSQNQTYTLKVETGKT 218
++L +W + GG P ++ D YTIN + S +T ++V+ G
Sbjct: 140 ILMLSDW-----VSSWANKPGEGGIPGDVFDYYTINAK-------SFPETQPIRVKKGDV 187
Query: 219 YLLRIINAALNNQLFFKIANHNFTVVAIDACY--TEPYVTDVVVIAPGQTTDVLLKADQP 276
LR+I A + + + + + +A + +P D V+I PG+ DV+L D P
Sbjct: 188 IRLRLIGAG--DHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNP 245
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H +H HG H+ F + F L P + +T+ + G + +NPG+W
Sbjct: 200 HAIHTHG---HISQIAF--------KDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLW 248
Query: 527 FMHCHLDVH 535
+H H+D H
Sbjct: 249 MIHDHVDTH 257
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 112/237 (47%), Gaps = 13/237 (5%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT-IHWHGIFQLLSAWADGPSMITQ 101
++ + +NG++ GP I + GDT+ V V N N T IHWHGI Q + DG + +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 102 CPITP-GNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRPRSGHKYPFPKPNKEV 159
CPI P G TY++R Q GT W+H+HFS V G + I + P+
Sbjct: 114 CPIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPA--SLPYDIDLGVF 170
Query: 160 PIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYP-CSQNQTYTLKVETGKT 218
PI + AD + Q A P SD ING + P + Q + + GK
Sbjct: 171 PITDYYYRAADDLVHFTQNNA----PPFSDNVLINGTA--VNPNTGEGQYANVTLTPGKR 224
Query: 219 YLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQ 275
+ LRI+N + N + NH TV+A D D + +A GQ DV++ A +
Sbjct: 225 HRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASR 281
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 467 HPMHVHGFDFHVL---------AQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIR 517
HPMH+HG DF VL +Q FD A D + N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 518 FRANNPGVWFMHCHLDVHLPWGLATAFV 545
FR +NPG W HCH+ H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 112/237 (47%), Gaps = 13/237 (5%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT-IHWHGIFQLLSAWADGPSMITQ 101
++ + +NG++ GP I + GDT+ V V N N T IHWHGI Q + DG + +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTE 113
Query: 102 CPITP-GNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRPRSGHKYPFPKPNKEV 159
CPI P G TY++R Q GT W+H+HFS V G + I + P+
Sbjct: 114 CPIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPA--SLPYDIDLGVF 170
Query: 160 PIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYP-CSQNQTYTLKVETGKT 218
PI + AD + Q A P SD ING + P + Q + + GK
Sbjct: 171 PITDYYYRAADDLVHFTQNNA----PPFSDNVLINGTA--VNPNTGEGQYANVTLTPGKR 224
Query: 219 YLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQ 275
+ LRI+N + N + NH TV+A D D + +A GQ DV++ A +
Sbjct: 225 HRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASR 281
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 467 HPMHVHGFDFHVL---------AQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIR 517
HPMH+HG DF VL +Q FD A D + N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 518 FRANNPGVWFMHCHLDVHLPWGLATAFV 545
FR +NPG W HCH+ H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 112/237 (47%), Gaps = 13/237 (5%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT-IHWHGIFQLLSAWADGPSMITQ 101
++ + +NG++ GP I + GDT+ V V N N T IHWHGI Q + DG + +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 102 CPITP-GNSYTYKFRIVNQEGTLWWHAHFSMLRAT-VHGALIIRPRSGHKYPFPKPNKEV 159
CPI P G TY++R Q GT W+H+HFS V G + I + P+
Sbjct: 114 CPIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPA--SLPYDIDLGVF 170
Query: 160 PIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYP-CSQNQTYTLKVETGKT 218
PI + AD + Q A P SD ING + P + Q + + GK
Sbjct: 171 PITDYYYRAADDLVHFTQNNA----PPFSDNVLINGTA--VNPNTGEGQYANVTLTPGKR 224
Query: 219 YLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQ 275
+ LRI+N + N + NH TV+A D D + +A GQ DV++ A +
Sbjct: 225 HRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASR 281
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 467 HPMHVHGFDFHVL---------AQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIR 517
HPMH+HG DF VL +Q FD A D + N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 518 FRANNPGVWFMHCHLDVHLPWGLATAFV 545
FR +NPG W HCH+ H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 32/241 (13%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
++ T+ GS PGPT+RV DT+ + + N+ P +HWHG+ +S D P +
Sbjct: 33 QRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL--PISPKVDDPFL--- 87
Query: 102 CPITPGNSYTYKFRIVNQ-EGTLWWHAHF-----SMLRATVHGALIIRPRSGHKYPFPKP 155
I PG S+TY+F + + GT W+H H L A + GAL++ S P +
Sbjct: 88 -EIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVE-SSLDAIPELRE 145
Query: 156 NKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYT-INGRPGDLYPCSQNQTYTLKVE 214
+E ++L D+A Q GG P +NG+ GDL + TL V
Sbjct: 146 AEEHLLVLK--------DLALQ----GGRPAPHTPMDWMNGKEGDLVLVNGALRPTL-VA 192
Query: 215 TGKTYLLRIINAALNNQLFFKIA--NHNFTVVAIDACY-TEPYVTDVVVIAPGQTTDVLL 271
T LR++NA +N ++++A +H ++A D + EP +++APG+ +VL+
Sbjct: 193 QKATLRLRLLNA--SNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLV 250
Query: 272 K 272
+
Sbjct: 251 R 251
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 99/253 (39%), Gaps = 29/253 (11%)
Query: 29 TFHVKNLTIGRLCRQQTI-TAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQ 87
T +K I + ++T+ NG +P P I V EGD L + V NK TIHWHG+
Sbjct: 54 TLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGV-- 111
Query: 88 LLSAWADGPSMITQCPITPGNSYTYKFRI-VNQEGTLWWHAH-----FSMLRATVHGALI 141
+ DG PI G Y+F I + GT W+H H + + GA +
Sbjct: 112 PVPPDQDGSP---HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFV 168
Query: 142 IRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLY 201
I+ + L D++ + PN + +NGR G+
Sbjct: 169 IKAKKD--------------ALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFV 214
Query: 202 PCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYV-TDVVV 260
N + K++ +RI NA L +I F +V D E + + +
Sbjct: 215 LI--NGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELF 272
Query: 261 IAPGQTTDVLLKA 273
++P +VL+ A
Sbjct: 273 LSPASRVEVLIDA 285
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 466 NHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGV 525
+HP H+HG F +++ + + +F + R+TI V +R + + G+
Sbjct: 406 DHPFHIHGTQFELIS---SKLNGKVQKAEFRAL----RDTINVRPNEELRLRMKQDFKGL 458
Query: 526 WFMHCHLDVHLPWGLATAFVVEN 548
HCH+ H G+ V+
Sbjct: 459 RMYHCHILEHEDLGMMGNLEVKE 481
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 106/267 (39%), Gaps = 50/267 (18%)
Query: 32 VKNLTIGRLCRQQTITAV-----------------NGSLPGPTIRVHEGDTLIVHVFNKS 74
L GR R+ I AV NG +PGPT+ EGD L +H N
Sbjct: 25 TSTLPDGRTLREWDIVAVDKDFEIAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAG 84
Query: 75 PYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA 134
+ TIH+HG+ + A DG I I PG S+TY+F GT +H H S L
Sbjct: 85 AHPHTIHFHGVHR---ATMDGTPGIGAGSIAPGQSFTYEFD-ATPFGTHLYHCHQSPLAP 140
Query: 135 TV----HGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDA 190
+ +G I+ P+ G P + E+ +++ +N D G + ++
Sbjct: 141 HIAKGLYGGFIVEPKEGR----PPADDEMVMVM-NGYNTD-------------GGDDNEF 182
Query: 191 YTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQL-FFKIANHNFTVVAIDAC 249
Y++NG P + +KV+ + + +IN + + F I + F
Sbjct: 183 YSVNGLPFHF------MDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTM 236
Query: 250 YTEPYVTDVVVIAPGQTTDVLLKADQP 276
T TD + GQ + L+ P
Sbjct: 237 LTPSEYTDTISQVQGQRGILELRFPYP 263
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 30/234 (12%)
Query: 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFR 115
PTI + G + + + NK +HWHG F + PS ITPG SY Y F
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG-FDVNWHNDAHPSF----AITPGESYNYSFD 92
Query: 116 IVNQEGTLWWHAHFSMLRATV----HGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADI 171
+VN+ GT +H H L A L+I SG F ++P+++ +
Sbjct: 93 VVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISD------ 146
Query: 172 IDVAKQAQATGGGP--NISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALN 229
+ GG P N + I G G+ + + K+ +G +Y LR++N +
Sbjct: 147 ------RRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKL-SGGSYRLRLVNGSNA 199
Query: 230 NQLFFKIANHNFTVV-----AIDACY-TEPYVTDVVVIAPGQTTDVLLKADQPV 277
I N VV A+D + P + +AP + +V+++ + V
Sbjct: 200 RLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGEGV 253
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSML-----R 133
H + A G + +T + PG T +F+ ++ GT +HA +
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHAAPEGMVPWHVV 141
Query: 134 ATVHGALIIRPRSGHKYPFPKP 155
+ + G L++ PR G K P KP
Sbjct: 142 SGMSGTLMVLPRDGLKDPQGKP 163
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
H + +PW
Sbjct: 127 VYHAAPEGMVPW 138
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFR---------IVNQEGTLWWHAHF 129
H + A G + +T + PG T +F+ + EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYVCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
C + +PW
Sbjct: 127 VYVCAPEGMVPW 138
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 33 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 92
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRATVHG 138
H + A G + +T + PG T +F+ ++ GT +H + G
Sbjct: 93 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHC---TPHPFMSG 139
Query: 139 ALIIRPRSGHKYPFPKP 155
L++ PR G K P KP
Sbjct: 140 TLMVLPRDGLKDPQGKP 156
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 34/124 (27%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 31 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 84
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 85 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 127
Query: 527 FMHC 530
HC
Sbjct: 128 VYHC 131
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSM----LR 133
H + A G + +T + PG T +F+ ++ GT +H A M +
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPHHVV 141
Query: 134 ATVHGALIIRPRSGHKYPFPKP 155
+ + G L++ PR G K P KP
Sbjct: 142 SGMSGTLMVLPRDGLKDPQGKP 163
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 34/124 (27%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHC 530
HC
Sbjct: 127 VYHC 130
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 EFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H +FH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVEFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSM----LR 133
H + A G + +T + PG T +F+ ++ GT +H A M +
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 141
Query: 134 ATVHGALIIRPRSGHKYPFPKP 155
+ + G L++ PR G K P KP
Sbjct: 142 SGLSGTLMVLPRDGLKDPEGKP 163
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPWGLATAF 544
HC + +PW + +
Sbjct: 127 VYHCAPEGMVPWHVVSGL 144
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSM----LR 133
H + A G + +T + PG T +F+ ++ GT +H A M +
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 141
Query: 134 ATVHGALIIRPRSGHKYPFPKP 155
+ + G L++ PR G K P KP
Sbjct: 142 SGLSGTLMVLPRDGLKDPEGKP 163
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPWGLATAF 544
HC + +PW + +
Sbjct: 127 VYHCAPEGMVPWHVVSGL 144
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 NFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H +FH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVNFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 33 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 92
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 93 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 143
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 144 GM-----SGTLMVLPRDGLKDPQGKP 164
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 31 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 84
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 85 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 127
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 128 VYHCAPEGMVPW 139
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 31 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 90
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSM----LR 133
H + A G + +T + PG T +F+ ++ GT +H A M +
Sbjct: 91 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 140
Query: 134 ATVHGALIIRPRSGHKYPFPKP 155
+ + G L++ PR G K P KP
Sbjct: 141 SGLSGTLMVLPRDGLKDPQGKP 162
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 29 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 82
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 83 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 125
Query: 527 FMHCHLDVHLPWGLATAF 544
HC + +PW + +
Sbjct: 126 VYHCAPEGMVPWHVVSGL 143
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 38 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 97
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 98 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 148
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 149 GM-----SGTLMVLPRDGLKDPQGKP 169
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 36 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 89
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 90 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 132
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 133 VYHCAPEGMVPW 144
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSM----LR 133
H + A G + +T + PG T +F+ ++ GT +H A M +
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 141
Query: 134 ATVHGALIIRPRSGHKYPFPKP 155
+ G L++ PR G K P KP
Sbjct: 142 SGASGTLMVLPRDGLKDPQGKP 163
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSMLRATV- 136
H + A G + +T + PG T +F+ ++ GT +H A M+ V
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 141
Query: 137 ---HGALIIRPRSGHKYPFPKP 155
G L++ PR G K P KP
Sbjct: 142 SGQSGTLMVLPRDGLKDPEGKP 163
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWH-AHFSMLRATV- 136
H + A G + +T + PG T +F+ ++ GT +H A M+ V
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 141
Query: 137 ---HGALIIRPRSGHKYPFPKP 155
G L++ PR G K P KP
Sbjct: 142 SGQSGTLMVLPRDGLKDPEGKP 163
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 29 TFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIHWHG 84
T K + I NGS+PGPT+ VHEGD TL+ N P+N+ H
Sbjct: 38 TIEEKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-- 95
Query: 85 IFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSML-----RATVHGA 139
+ A G + +T + PG T +F+ ++ GT +H S + + + G
Sbjct: 96 -----ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPSGMVPWHVVSGMSGT 147
Query: 140 LIIRPRSGHKYPFPKP 155
L++ PR G K P P
Sbjct: 148 LMVLPRDGLKDPAGAP 163
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ T+++ + FN + + LVV E + +
Sbjct: 30 PKVTEFTMTI--EEKKMVIDDSGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC +PW
Sbjct: 127 VYHCAPSGMVPW 138
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+++
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHSVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+++
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHSVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 IVEHTFHVKNLTIGRLCRQQTITAV--NGSLPGPTIRVHEGD----TLIVHVFNKSPYNL 78
+VE T ++ + + T+ A+ NGS+PGPT+ VHEGD TL+ N P+++
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSV 91
Query: 79 TIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQ---------EGTLWWHAHF 129
H + A G + +T + PG T +F+ EG + WH
Sbjct: 92 DFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 130 SMLRATVHGALIIRPRSGHKYPFPKP 155
M G L++ PR G K P KP
Sbjct: 143 GM-----SGTLMVLPRDGLKDPQGKP 163
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHV------ 471
P + +FT T + ++ K T+++ + FN + + LVV E + +
Sbjct: 30 PKVVEFTMTI--EEKKMVIDDKGTTLQAMTFNGS----MPGPTLVVHEGDYVQLTLVNPA 83
Query: 472 -----HGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H DFH G K VNP G A +RF+A+ G +
Sbjct: 84 TNAMPHSVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTF 126
Query: 527 FMHCHLDVHLPW 538
HC + +PW
Sbjct: 127 VYHCAPEGMVPW 138
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 23/236 (9%)
Query: 46 ITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQ--LLSAWADGPSMITQCP 103
+ +G PGPT +V G +V N + ++H HG F WA+ IT+
Sbjct: 59 LVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGWAED---ITE-- 113
Query: 104 ITPGNSYTYKFRIVNQEGTLWWHAHFSMLRATVHGALIIRPRSGHKYPFPKPNKEVPIIL 163
PG+ Y + TLW+H H + T A R ++G Y P ++ +
Sbjct: 114 --PGSFKDYYYPNRQSARTLWYHDH--AMHITAENAY--RGQAG-LYMLTDPAEDALNLP 166
Query: 164 GEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRI 223
+ DI + Q T G ++ +N GD+ + Q + K + Y R
Sbjct: 167 SGYGEFDIPMILTSKQYTANGNLVTTNGELNSFWGDVIHVN-GQPWPFKNVEPRKYRFRF 225
Query: 224 INAALNNQLFFKIANHN-------FTVVAIDACYTE-PYVTDVVVIAPGQTTDVLL 271
++AA++ A+ + F V+A D+ E P T ++ I+ + +V+
Sbjct: 226 LDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLLYISMAERYEVVF 281
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKF-----NLVNPQRRNTIAVPVGGWAVIRFRAN 521
HP+H+H DF V+++ GN AR + ++V RR T+ V A
Sbjct: 398 HPIHIHLVDFKVISRTSGN--NARTVMPYESGLKDVVWLGRRETVVVEA-------HYAP 448
Query: 522 NPGVWFMHCHLDVHLPWGLATAF 544
PGV+ HCH +H + AF
Sbjct: 449 FPGVYMFHCHNLIHEDHDMMAAF 471
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYT 111
S+PGP I V+EGDTL + N ++H HG+ +S +DG +M + + PG + T
Sbjct: 35 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTAM-NKSDVEPGGTRT 91
Query: 112 YKFRI----VNQEGTL------WWHAHFSMLRATVHGALIIR 143
Y +R +GT +WH H ++ T HG IR
Sbjct: 92 YTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 132
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 512 GWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548
G+ +I G W HCH+ H G+ F+V+
Sbjct: 232 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 268
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYT 111
S+PGP I V+EGDTL + N ++H HG+ +S +DG +M + + PG + T
Sbjct: 73 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTAM-NKSDVEPGGTRT 129
Query: 112 YKFRI----VNQEGTL------WWHAHFSMLRATVHGALIIR 143
Y +R +GT +WH H ++ T HG IR
Sbjct: 130 YTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 170
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 512 GWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548
G+ +I G W HCH+ H G+ F+V+
Sbjct: 270 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 306
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYT 111
S+PGP I V+EGDTL + N ++H HG+ +S +DG +M + + PG + T
Sbjct: 32 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTAM-NKSDVEPGGTRT 88
Query: 112 YKFRI----VNQEGTL------WWHAHFSMLRATVHGALIIR 143
Y +R +GT +WH H ++ T HG IR
Sbjct: 89 YTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 129
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 512 GWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548
G+ +I G W HCH+ H G+ F+V+
Sbjct: 229 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 265
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGI-FQLLSAWADGPSMITQCPITPGNSY 110
S+PGP I V+EGDTL + N ++H HG+ F++ S DG +M + + PG +
Sbjct: 36 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISS---DGTAM-NKSDVEPGGTR 91
Query: 111 TYKFRI----VNQEGTL------WWHAHFSMLRATVHGALIIR 143
TY +R +GT +WH H ++ T HG IR
Sbjct: 92 TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 133
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 512 GWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548
G+ +I G W HCH+ H G+ F+V+
Sbjct: 233 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 269
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPG-- 524
HP H+HG F +L++ G AA R + N V +++F + P
Sbjct: 415 HPFHIHGTQFRILSEN-GKPPAAH-RAGWKDTVKVEGNVSEV------LVKFNHDAPKEH 466
Query: 525 VWFMHCHLDVHLPWGLATAFVVENG 549
+ HCHL H G+ F V G
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPG-- 524
HP H+HG F +L++ G AA R + N V +++F + P
Sbjct: 415 HPFHIHGTQFRILSEN-GKPPAAH-RAGWKDTVKVEGNVSEV------LVKFNHDAPKEH 466
Query: 525 VWFMHCHLDVHLPWGLATAFVVENG 549
+ HCHL H G+ F V G
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPG-- 524
HP H+HG F +L++ G AA R + N V +++F + P
Sbjct: 415 HPFHIHGTQFRILSEN-GKPPAAH-RAGWKDTVKVEGNVSEV------LVKFNHDAPKEH 466
Query: 525 VWFMHCHLDVHLPWGLATAFVVENG 549
+ HCHL H G+ F V G
Sbjct: 467 AYMAHCHLLEHDDTGMMLGFTVLQG 491
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101
+ T NG+L GP +++ G + V ++N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPITPGNSYTYKFRIVNQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYT 111
++PGP I ++EGDTL + N +++H HG+ +S +DG ++ + PG + T
Sbjct: 38 TIPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDGTKQ-SRSDVEPGGTRT 94
Query: 112 YKFRI----VNQEGTL------WWHAHFSMLRATVHGALIIR 143
Y +R +GT +WH H ++ T HG IR
Sbjct: 95 YTWRTHVPGRRADGTWRAGSAGYWHYHDHVV-GTEHGTGGIR 135
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 512 GWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548
G+ VI G W HCH+ H G+ F+V+
Sbjct: 235 GFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 271
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 50 NGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPIT 105
NGS+PGPT+ VHEGD TL+ N P+N+ H +
Sbjct: 55 NGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGAL---------GGAGLTQVV 105
Query: 106 PGNSYTYKFRIVNQEGTLWWH-AHFSM----LRATVHGALIIRPRSG 147
PG +F+ ++ GT +H A M + + ++GAL++ PR G
Sbjct: 106 PGQEAVLRFK-ADRSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDG 151
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 50 NGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNS 109
+G +PG IRV EGDT+ V F+ +P + H + T PG +
Sbjct: 64 DGDVPGRMIRVREGDTVEVE-FSNNPSSTVPHNVDFHAATGQGGGAAATFT----APGRT 118
Query: 110 YTYKFRIVNQEGTLWWHAHFS----MLRATVHGALIIRPRSGHKYPFPKPNKEVPIILGE 165
T+ F+ + Q G +H + + ++G +++ P+ G PK +KE I+ G+
Sbjct: 119 STFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYIVQGD 173
Query: 166 WW 167
++
Sbjct: 174 FY 175
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 43/242 (17%)
Query: 52 SLPGPTIRVHEGDTLIVHVFN----KSPYNLTIHWHGIFQLLSAWADGPSMITQCPIT-P 106
++PG IRV EGD + ++ N K P+N+ +H GP + T P
Sbjct: 56 TVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH----------AVTGPGGGAESSFTAP 105
Query: 107 GNSYTYKFRIVNQEGTLWWH---AHFSMLRAT-VHGALIIRPRSGHKYPFPKPNKEVPII 162
G++ T+ F+ +N G +H A M A ++G +++ P+ G ++E ++
Sbjct: 106 GHTSTFNFKALNP-GLYIYHCATAPVGMHIANGMYGLILVEPKEG----LAPVDREYYLV 160
Query: 163 LGEWWNADI--------IDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVE 214
G+++ D+AK +D NG G S +L +
Sbjct: 161 QGDFYTKGEFGEAGLQPFDMAKAIDED------ADYVVFNGSVG-----STTDENSLTAK 209
Query: 215 TGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKAD 274
G+T L I N N F + F V ++ + + +I G V K +
Sbjct: 210 VGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVE 269
Query: 275 QP 276
P
Sbjct: 270 VP 271
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 29 TFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TIHWHGIF 86
T K L I R + NGS+PGP + VHE D + + + N L I +H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 87 QLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSMLRATVH 137
L + PG T +F+ EG + WH M +
Sbjct: 104 GALGG-------GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM-----N 151
Query: 138 GALIIRPRSGHK 149
GA+++ PR G K
Sbjct: 152 GAIMVLPRDGLK 163
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVE---MILQNTALVVLE----NHPMH 470
P + +FT T + L+ + T + + FN +V M++ V L +
Sbjct: 36 PRVVEFTMTI--EEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTL 93
Query: 471 VHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHC 530
+H DFH G + VNP T+ RF+A PGV+ HC
Sbjct: 94 LHNIDFHAATGALGGGALTQ-------VNPGEETTL----------RFKATKPGVFVYHC 136
Query: 531 HLDVHLPWGLATAF 544
+ +PW + +
Sbjct: 137 APEGMVPWHVTSGM 150
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 29 TFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TIHWHGIF 86
T K L I R + NGS+PGP + VHE D + + + N L I +H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 87 QLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSMLRATVH 137
L + PG T +F+ EG + WH M +
Sbjct: 104 GALGG-------GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM-----N 151
Query: 138 GALIIRPRSGHK 149
GA+++ PR G K
Sbjct: 152 GAIMVLPRDGLK 163
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVE---MILQNTALVVLE----NHPMH 470
P + +FT T + L+ + T + + FN +V M++ V L +
Sbjct: 36 PRVVEFTMTI--EEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTL 93
Query: 471 VHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHC 530
+H DFH G + VNP T+ RF+A PGV+ HC
Sbjct: 94 LHNIDFHAATGALGGGALTQ-------VNPGEETTL----------RFKATKPGVFVYHC 136
Query: 531 HLDVHLPWGLATAF 544
+ +PW + +
Sbjct: 137 APEGMVPWHVTSGM 150
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 29 TFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TIHWHGIF 86
T K L I R + NGS+PGP + VHE D + + + N L I +H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 87 QLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSMLRATVH 137
L + PG T +F+ EG + WH M +
Sbjct: 104 GALGG-------GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM-----N 151
Query: 138 GALIIRPRSGHK 149
GA+++ PR G K
Sbjct: 152 GAIMVLPRDGLK 163
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVE---MILQNTALVVLE----NHPMH 470
P + +FT T + L+ + T + + FN +V M++ V L +
Sbjct: 36 PRVVEFTMTI--EEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTL 93
Query: 471 VHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHC 530
+H DFH G + VNP T+ RF+A PGV+ HC
Sbjct: 94 LHNIDFHAATGALGGGALTQ-------VNPGEETTL----------RFKATKPGVFVYHC 136
Query: 531 HLDVHLPWGLATAF 544
+ +PW + +
Sbjct: 137 APEGMVPWHVTSGM 150
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 29 TFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TIHWHGIF 86
T K L I R + NGS+PGP + VHE D + + + N L I +H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 87 QLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSMLRATVH 137
L + PG T +F+ EG + WH M +
Sbjct: 104 GALGG-------GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM-----N 151
Query: 138 GALIIRPRSGHK 149
GA+++ PR G K
Sbjct: 152 GAIMVLPRDGLK 163
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVE---MILQNTALVVLE----NHPMH 470
P + +FT T + L+ + T + + FN +V M++ V L +
Sbjct: 36 PRVVEFTMTI--EEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTL 93
Query: 471 VHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHC 530
+H DFH G + VNP T+ RF+A PGV+ HC
Sbjct: 94 LHNIDFHAATGALGGGALTQ-------VNPGEETTL----------RFKATKPGVFVYHC 136
Query: 531 HLDVHLPWGLATAF 544
+ +PW + +
Sbjct: 137 APEGMVPWHVTSGM 150
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 53 LPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGI----FQLLSAWADG--PSMITQCPITP 106
L GPT+ GD + VH NK+ L+IH GI F ++++D P + P
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 107 GNSYTYKFRIVNQEG 121
G YTY++ I G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 23/119 (19%)
Query: 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYT 111
++PGP + + EGDTL + + N + L++H HG+ ++ +DG +++ + PG +
Sbjct: 54 TVPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYDVN--SDG-TLMNGSAVMPGQTRR 110
Query: 112 YKFRI---------VNQEGTL-WWHAHFSMLRAT---------VHGALIIRPRSGHKYP 151
Y +R EGT +WH H + ++GAL++R R G P
Sbjct: 111 YTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVR-RQGDLLP 168
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 512 GWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548
G+ VI PG+W HCH+ H G+A F+V N
Sbjct: 251 GFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRN 287
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 29/239 (12%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQC 102
+ ++ +NG GPTIRV +GD + + N+ N+++ G+ Q+ GP+ +
Sbjct: 37 RASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM--- 92
Query: 103 PITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT-----VHGALIIRPRSGHKYPFPK--P 155
++P + I TLW+HA+ A + G ++ P P
Sbjct: 93 -MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYG 151
Query: 156 NKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVET 215
+ P+I+ + D + + GG + D +NG + VE
Sbjct: 152 VDDFPVIIQD-KRLDNFGTPEYNEPGSGG-FVGDTLLVNG------------VQSPYVEV 197
Query: 216 GKTYL-LRIINAALNNQLFFKIANHN-FTVVAIDACYT-EPYVTDVVVIAPGQTTDVLL 271
+ ++ LR++NA+ + + ++ + V++ D + P + +APG+ ++L+
Sbjct: 198 SRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILV 256
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H +H HG F +G + D + G + + PG+W
Sbjct: 975 HTVHFHGHSFQYKHRGVYSSDV-----------------FDIFPGTYQTLEMFPRTPGIW 1017
Query: 527 FMHCHLDVHLPWGLATAFVV 546
+HCH+ H+ G+ T + V
Sbjct: 1018 LLHCHVTDHIHAGMETTYTV 1037
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 55 GPTIRVHEGDTLIVHVFNKSPYNLTIHWHGI-FQLLSAWADGPSMITQC-----PITPGN 108
GP I+ GD + VH+ N + T H HGI + A P T + PG
Sbjct: 75 GPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGE 134
Query: 109 SYTY 112
YTY
Sbjct: 135 QYTY 138
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 467 HPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVW 526
H +H HG F +G + D + G + + PG+W
Sbjct: 994 HTVHFHGHSFQYKHRGVYSSDV-----------------FDIFPGTYQTLEMFPRTPGIW 1036
Query: 527 FMHCHLDVHLPWGLATAFVV 546
+HCH+ H+ G+ T + V
Sbjct: 1037 LLHCHVTDHIHAGMETTYTV 1056
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 55 GPTIRVHEGDTLIVHVFNKSPYNLTIHWHGI-FQLLSAWADGPSMITQC-----PITPGN 108
GP I+ GD + VH+ N + T H HGI + A P T + PG
Sbjct: 94 GPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGE 153
Query: 109 SYTY 112
YTY
Sbjct: 154 QYTY 157
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWA----DGPSM 98
++ I +G L GP + GDTL++ N++ I+ HGI + ++ G
Sbjct: 439 REAIQHESGIL-GPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKH 497
Query: 99 ITQCPITPGNSYTYKFRIVNQEG 121
+ PI PG + YK+ + ++G
Sbjct: 498 LKDFPILPGEIFKYKWTVTVEDG 520
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 53 LPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGI-FQLLSAWADGPSMITQCP-----ITP 106
L GPTI+ DT+++ + N + + +++H G+ + S A+ +Q + P
Sbjct: 71 LLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFP 130
Query: 107 GNSYTYKFRIVNQEGTL 123
G S+TY ++++ + G +
Sbjct: 131 GGSHTYVWQVLKENGPM 147
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWA----DGPSM 98
++ I +G L GP + GDTL++ N++ I+ HGI + ++ G
Sbjct: 440 REAIQHESGIL-GPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKH 498
Query: 99 ITQCPITPGNSYTYKFRIVNQEG 121
+ PI PG + YK+ + ++G
Sbjct: 499 LKDFPILPGEIFKYKWTVTVEDG 521
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 53 LPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGI-FQLLSAWADGPSMITQCP-----ITP 106
L GPTI+ DT+++ + N + + +++H G+ + S A+ +Q + P
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFP 131
Query: 107 GNSYTYKFRIVNQEGTL 123
G S+TY ++++ + G +
Sbjct: 132 GGSHTYVWQVLKENGPM 148
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 53/249 (21%)
Query: 50 NGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNS 109
NG +PGP +RV GDT+ +H+ N + ++ H + + G + TQ PG
Sbjct: 189 NGKVPGPFLRVRVGDTVELHLKN---HKDSLMVHSVDFHGATGPGGAAAFTQT--DPGEE 243
Query: 110 YTYKFRIVNQEGTLWWHAHF----SMLRATVHGALIIRPRSGHKYPFPKPNKEVPIILGE 165
F+ + G +H + + ++G L++ P G P+ ++E ++ GE
Sbjct: 244 TVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEGG----LPQVDREFYVMQGE 298
Query: 166 WWNADIIDVAKQAQATGGGPNISDAYTINGRP------GDLYPCSQNQTYTLKVETGKTY 219
+ ++ T G + IN +P G + S +++ L G+T
Sbjct: 299 IYTV-------KSFGTSGEQEMDYEKLINEKPEYFLFNGSV--GSLTRSHPLYASVGETV 349
Query: 220 LLRIINAALNNQLFFKIANHNFT------------VVAIDACYTEPYV-TDVVVIAPGQT 266
++FF + NFT V ++ + + P + V + PG
Sbjct: 350 -----------RIFFGVGGPNFTSSFHVIGEIFDHVYSLGSVVSPPLIGVQTVSVPPGGA 398
Query: 267 TDVLLKADQ 275
T V K D+
Sbjct: 399 TIVDFKIDR 407
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 29/137 (21%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIHWHGIFQL 88
K + + Q +T +GS+PGP + VHEGD TLI N P+N+ H
Sbjct: 42 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH------- 93
Query: 89 LSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLW----------WHAHFSMLRATVHG 138
A I PG +F+ ++ WH M G
Sbjct: 94 --AATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMA-----G 146
Query: 139 ALIIRPRSGHKYPFPKP 155
+++ PR G K KP
Sbjct: 147 CIMVLPRDGLKDHEGKP 163
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 29/137 (21%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIHWHGIFQL 88
K + + Q +T +GS+PGP + VHEGD TLI N P+N+ H
Sbjct: 40 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH------- 91
Query: 89 LSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLW----------WHAHFSMLRATVHG 138
A I PG +F+ ++ WH M G
Sbjct: 92 --AATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMA-----G 144
Query: 139 ALIIRPRSGHKYPFPKP 155
+++ PR G K KP
Sbjct: 145 CIMVLPRDGLKDHEGKP 161
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIH 81
K + + Q +T +GS+PGP + VHEGD TLI N P+N+ H
Sbjct: 37 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIH 81
K + + Q +T +GS+PGP + VHEGD TLI N P+N+ H
Sbjct: 37 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGD----TLIVHVFNKSPYNLTIH 81
K + + Q +T +GS+PGP + VHEGD TLI N P+N+ H
Sbjct: 42 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLT--I 80
+VE T + K + I + A NG++PGP + VH+ D L + + N LT I
Sbjct: 34 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLTHNI 93
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 94 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 146
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 147 -----NGAIMVLPREG 157
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAF 544
G ++RF+A PGV+ HC +PW + +
Sbjct: 113 GEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 146
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAF 544
G ++RF+A PGV+ HC +PW + +
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPWAVVSGM 153
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENG 549
G ++RF+A PGV+ HC +PW + + ENG
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPWHVVSG---ENG 155
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 26/128 (20%)
Query: 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVE----MILQNTALVVLENHPMH--- 470
P + +FT + + ++ T V L FN TV ++ Q+ L + +P
Sbjct: 33 PKVVEFT--MVIEEKKIVIDDAGTEVHALAFNGTVPGPLMVVHQDDYLELTLINPETNTL 90
Query: 471 VHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHC 530
+H DFH G +NP + ++RF+A PGV+ HC
Sbjct: 91 MHNIDFHAATGALGGGGLTE-------INPGEKT----------ILRFKATKPGVFVYHC 133
Query: 531 HLDVHLPW 538
+PW
Sbjct: 134 APPGMVPW 141
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHALAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAF 544
G ++RF+A PGV+ HC +PW + +
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGL 147
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWH----- 142
Query: 132 LRATVHGALIIRPRSG 147
+ + ++GA+++ PR G
Sbjct: 143 VVSGLNGAIMVLPREG 158
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 117 GEKTILRFKATKPGVFVYHCAPPGMVPW 144
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPW 147
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 41 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 100
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 101 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 153
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 154 -----NGAIMVLPREG 164
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
++H L I PG +F+ G + WH M
Sbjct: 95 NFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQE---------GTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 25 IVEHTFHV--KNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TI 80
+VE T + K + I + A NG++PGP + VH+ D L + + N L I
Sbjct: 35 VVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNI 94
Query: 81 HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVN---------QEGTLWWHAHFSM 131
+H L I PG +F+ G + WH M
Sbjct: 95 DFHAATGALGG-------GGLTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGM 147
Query: 132 LRATVHGALIIRPRSG 147
+GA+++ PR G
Sbjct: 148 -----NGAIMVLPREG 158
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 511 GGWAVIRFRANNPGVWFMHCHLDVHLPW 538
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,775,833
Number of Sequences: 62578
Number of extensions: 721455
Number of successful extensions: 1686
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 248
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)