Query 008422
Match_columns 566
No_of_seqs 208 out of 1718
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 11:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 6E-108 1E-112 885.0 63.5 538 23-566 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 4E-106 9E-111 861.8 59.9 517 21-566 23-554 (596)
3 PLN02991 oxidoreductase 100.0 3E-105 7E-110 850.6 61.1 505 12-566 15-530 (543)
4 PLN02792 oxidoreductase 100.0 4E-104 8E-109 844.3 59.8 507 22-566 13-523 (536)
5 PLN02835 oxidoreductase 100.0 6E-104 1E-108 845.6 60.3 497 21-566 25-531 (539)
6 PLN02354 copper ion binding / 100.0 2E-103 5E-108 842.2 60.5 504 21-566 23-538 (552)
7 PLN02168 copper ion binding / 100.0 3E-103 7E-108 837.3 60.2 513 5-566 7-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 4E-101 9E-106 814.0 58.0 530 16-566 19-555 (563)
9 PLN02191 L-ascorbate oxidase 100.0 2.6E-98 6E-103 808.9 58.7 510 22-566 20-561 (574)
10 PLN02604 oxidoreductase 100.0 1.6E-97 3E-102 805.0 61.3 529 5-566 6-561 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 6.6E-97 1E-101 798.1 58.0 508 25-566 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 5.5E-93 1.2E-97 765.2 55.4 488 26-549 9-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.1E-76 2.4E-81 637.4 51.4 436 25-547 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 4.7E-74 1E-78 613.0 46.9 427 25-546 45-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.9E-72 6.2E-77 594.5 44.6 403 27-548 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 9.3E-58 2E-62 486.4 41.7 402 38-547 46-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 7.5E-48 1.6E-52 387.4 25.4 265 21-310 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 4.7E-35 1E-39 251.6 12.5 116 31-146 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 1.2E-29 2.5E-34 227.3 11.3 108 437-548 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 1.4E-26 3.1E-31 211.7 12.5 150 157-309 1-159 (159)
21 TIGR01480 copper_res_A copper- 99.7 3.1E-16 6.8E-21 169.8 21.3 230 47-290 249-576 (587)
22 TIGR03095 rusti_cyanin rusticy 99.7 9.8E-17 2.1E-21 143.2 13.7 101 41-143 38-148 (148)
23 TIGR02376 Cu_nitrite_red nitri 99.7 2.8E-14 6.1E-19 144.1 25.8 247 188-548 47-297 (311)
24 PRK10965 multicopper oxidase; 99.5 4.9E-13 1.1E-17 144.0 21.7 237 43-291 211-513 (523)
25 PLN02835 oxidoreductase 99.5 3E-12 6.5E-17 138.4 23.8 243 44-290 191-501 (539)
26 TIGR03389 laccase laccase, pla 99.5 7.3E-12 1.6E-16 136.4 25.7 245 45-291 167-510 (539)
27 PRK10883 FtsI repressor; Provi 99.4 5.1E-12 1.1E-16 134.8 20.1 224 41-291 206-458 (471)
28 TIGR03096 nitroso_cyanin nitro 99.4 1.4E-12 3E-17 112.3 12.2 98 20-133 19-124 (135)
29 COG2132 SufI Putative multicop 99.3 4.4E-11 9.5E-16 128.1 16.8 237 41-291 186-439 (451)
30 TIGR03388 ascorbase L-ascorbat 99.3 1.1E-09 2.3E-14 119.5 24.8 233 57-291 204-514 (541)
31 PLN02991 oxidoreductase 99.2 3.1E-09 6.7E-14 114.7 26.4 241 44-287 190-497 (543)
32 PLN02792 oxidoreductase 99.2 3.7E-09 8E-14 114.2 26.5 244 43-289 178-492 (536)
33 PLN02604 oxidoreductase 99.2 9.8E-10 2.1E-14 120.2 22.0 233 56-290 224-536 (566)
34 PLN02354 copper ion binding / 99.2 2.8E-09 6.1E-14 115.6 25.2 240 45-287 190-505 (552)
35 TIGR03390 ascorbOXfungal L-asc 99.2 1.9E-09 4.2E-14 117.2 22.5 245 45-291 172-522 (538)
36 PLN02168 copper ion binding / 99.2 2.2E-09 4.8E-14 116.0 22.4 240 44-286 188-501 (545)
37 PLN02191 L-ascorbate oxidase 99.0 3E-08 6.4E-13 108.5 20.4 239 49-291 219-537 (574)
38 PF07731 Cu-oxidase_2: Multico 98.9 6.4E-09 1.4E-13 92.8 10.6 82 207-290 32-124 (138)
39 PLN00044 multi-copper oxidase- 98.9 4.6E-07 1E-11 98.7 24.0 231 56-289 217-522 (596)
40 PF13473 Cupredoxin_1: Cupredo 98.6 1.1E-07 2.4E-12 80.3 7.5 70 56-142 35-104 (104)
41 PF07732 Cu-oxidase_3: Multico 98.6 1.6E-07 3.4E-12 80.9 8.5 89 442-548 26-115 (117)
42 KOG1263 Multicopper oxidases [ 98.6 1.2E-05 2.5E-10 87.0 23.1 82 209-291 430-526 (563)
43 PRK02710 plastocyanin; Provisi 98.6 1.4E-06 2.9E-11 75.4 12.9 73 56-143 47-119 (119)
44 TIGR02656 cyanin_plasto plasto 98.2 7E-06 1.5E-10 68.5 8.8 81 56-143 17-99 (99)
45 TIGR02657 amicyanin amicyanin. 98.1 1.8E-05 4E-10 63.7 8.7 73 56-143 11-83 (83)
46 TIGR03095 rusti_cyanin rusticy 98.0 3.7E-05 8E-10 68.9 8.7 92 442-547 52-148 (148)
47 PRK02888 nitrous-oxide reducta 97.9 4.5E-05 9.8E-10 82.2 10.2 98 37-145 534-635 (635)
48 PF00127 Copper-bind: Copper b 97.9 3.3E-05 7.2E-10 64.5 7.4 82 56-143 17-99 (99)
49 PF00394 Cu-oxidase: Multicopp 97.8 0.00011 2.4E-09 67.1 9.4 93 441-547 59-156 (159)
50 PF06525 SoxE: Sulfocyanin (So 97.8 0.00027 5.8E-09 65.0 11.3 102 46-148 75-191 (196)
51 TIGR03094 sulfo_cyanin sulfocy 97.7 0.00034 7.4E-09 62.8 10.7 100 47-147 75-189 (195)
52 TIGR02656 cyanin_plasto plasto 97.5 0.00059 1.3E-08 56.9 8.1 83 442-547 17-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.4 0.0011 2.4E-08 56.6 8.9 75 56-146 15-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.2 0.0024 5.3E-08 55.1 8.7 75 56-144 54-128 (128)
55 TIGR03102 halo_cynanin halocya 97.1 0.0038 8.3E-08 53.2 9.3 73 56-143 42-115 (115)
56 TIGR03096 nitroso_cyanin nitro 97.1 0.0027 5.8E-08 55.3 7.9 60 442-532 61-120 (135)
57 PF00127 Copper-bind: Copper b 96.9 0.0095 2.1E-07 49.6 9.6 83 442-547 17-99 (99)
58 PRK02888 nitrous-oxide reducta 96.4 0.015 3.3E-07 63.1 9.6 79 442-548 555-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.3 0.019 4.2E-07 48.2 7.9 67 442-540 35-101 (104)
60 PRK02710 plastocyanin; Provisi 95.7 0.056 1.2E-06 46.6 8.2 73 442-547 47-119 (119)
61 PF06525 SoxE: Sulfocyanin (So 95.2 0.14 3E-06 47.4 9.1 92 190-291 75-176 (196)
62 COG4454 Uncharacterized copper 95.1 0.27 6E-06 43.5 10.2 88 52-144 59-158 (158)
63 TIGR02375 pseudoazurin pseudoa 94.5 0.26 5.6E-06 42.2 8.5 36 510-549 54-89 (116)
64 PF00116 COX2: Cytochrome C ox 94.1 0.35 7.5E-06 41.7 8.7 72 56-142 46-119 (120)
65 PRK10378 inactive ferrous ion 93.2 0.7 1.5E-05 47.7 10.5 79 52-146 40-119 (375)
66 TIGR02657 amicyanin amicyanin. 93.2 0.64 1.4E-05 37.1 8.2 73 442-547 11-83 (83)
67 TIGR02695 azurin azurin. Azuri 92.9 0.54 1.2E-05 40.3 7.5 86 56-141 16-124 (125)
68 COG4454 Uncharacterized copper 92.7 0.27 5.8E-06 43.6 5.7 95 442-547 63-157 (158)
69 TIGR03102 halo_cynanin halocya 91.4 1.5 3.2E-05 37.5 8.6 74 442-547 42-115 (115)
70 PF00116 COX2: Cytochrome C ox 88.4 7.8 0.00017 33.3 10.8 74 441-546 45-119 (120)
71 PF12690 BsuPI: Intracellular 87.5 6.5 0.00014 31.3 9.0 65 219-284 4-82 (82)
72 PF12690 BsuPI: Intracellular 86.8 1.5 3.2E-05 35.0 5.0 58 57-125 17-80 (82)
73 COG1470 Predicted membrane pro 86.1 47 0.001 35.2 16.5 176 58-289 278-470 (513)
74 TIGR02866 CoxB cytochrome c ox 85.7 8.3 0.00018 36.5 10.5 76 56-146 117-194 (201)
75 TIGR02695 azurin azurin. Azuri 84.4 2 4.3E-05 36.9 4.9 80 207-286 14-112 (125)
76 COG3794 PetE Plastocyanin [Ene 83.1 7.7 0.00017 33.7 8.0 75 442-548 54-128 (128)
77 TIGR03094 sulfo_cyanin sulfocy 82.9 13 0.00029 34.0 9.7 100 440-549 83-187 (195)
78 TIGR02866 CoxB cytochrome c ox 82.6 6.1 0.00013 37.4 8.1 76 441-548 116-192 (201)
79 COG1622 CyoA Heme/copper-type 80.4 13 0.00029 36.3 9.6 77 56-147 137-215 (247)
80 COG4263 NosZ Nitrous oxide red 79.4 2.8 6.1E-05 43.6 4.8 77 56-143 558-636 (637)
81 PF05506 DUF756: Domain of unk 63.0 63 0.0014 25.9 8.4 55 55-116 8-65 (89)
82 PF07705 CARDB: CARDB; InterP 62.6 78 0.0017 25.4 9.2 67 212-287 14-84 (101)
83 COG2967 ApaG Uncharacterized p 57.4 17 0.00036 30.8 3.9 47 68-115 34-86 (126)
84 COG1622 CyoA Heme/copper-type 57.0 46 0.001 32.5 7.7 76 441-548 136-212 (247)
85 PF14344 DUF4397: Domain of un 55.1 1.3E+02 0.0028 25.4 10.7 37 238-274 44-82 (122)
86 PF05938 Self-incomp_S1: Plant 51.9 57 0.0012 27.3 6.6 66 67-144 2-70 (110)
87 PF10633 NPCBM_assoc: NPCBM-as 51.6 62 0.0013 25.1 6.4 64 213-285 1-74 (78)
88 TIGR01433 CyoA cytochrome o ub 51.4 40 0.00087 32.5 6.2 61 209-288 139-199 (226)
89 PF04379 DUF525: Protein of un 49.4 23 0.00049 28.8 3.5 49 218-269 15-67 (90)
90 PF01835 A2M_N: MG2 domain; I 48.5 41 0.00089 27.3 5.2 72 212-287 10-86 (99)
91 MTH00140 COX2 cytochrome c oxi 47.7 55 0.0012 31.6 6.6 61 209-288 140-200 (228)
92 PF04151 PPC: Bacterial pre-pe 47.7 71 0.0015 24.1 6.0 66 208-285 4-69 (70)
93 KOG4063 Major epididymal secre 47.3 1.9E+02 0.0042 25.8 9.1 76 40-117 34-123 (158)
94 PRK05461 apaG CO2+/MG2+ efflux 46.7 47 0.001 28.9 5.3 49 218-269 32-84 (127)
95 PF07691 PA14: PA14 domain; I 46.5 1.3E+02 0.0029 26.0 8.6 61 210-275 53-120 (145)
96 TIGR01433 CyoA cytochrome o ub 44.0 66 0.0014 31.0 6.4 75 442-548 139-214 (226)
97 PRK05461 apaG CO2+/MG2+ efflux 43.6 36 0.00078 29.6 4.1 19 94-113 67-85 (127)
98 MTH00140 COX2 cytochrome c oxi 42.8 99 0.0021 29.8 7.5 76 441-548 139-215 (228)
99 TIGR01432 QOXA cytochrome aa3 42.8 54 0.0012 31.4 5.6 61 209-288 130-190 (217)
100 PRK10378 inactive ferrous ion 41.2 1E+02 0.0022 32.2 7.6 64 207-286 42-105 (375)
101 MTH00008 COX2 cytochrome c oxi 39.4 94 0.002 30.0 6.8 61 209-288 140-200 (228)
102 PF14524 Wzt_C: Wzt C-terminal 38.6 1.1E+02 0.0024 26.3 6.7 74 210-286 28-107 (142)
103 PTZ00047 cytochrome c oxidase 37.8 1.4E+02 0.003 27.1 6.9 61 210-289 74-134 (162)
104 smart00758 PA14 domain in bact 37.7 1.8E+02 0.004 24.9 7.9 60 211-275 52-112 (136)
105 TIGR03396 PC_PLC phospholipase 37.4 2.3E+02 0.0051 32.2 10.2 66 54-128 592-660 (690)
106 PRK13202 ureB urease subunit b 36.6 1.1E+02 0.0023 25.5 5.5 59 57-115 12-83 (104)
107 MTH00098 COX2 cytochrome c oxi 36.0 1.1E+02 0.0023 29.6 6.5 60 210-288 141-200 (227)
108 MTH00129 COX2 cytochrome c oxi 35.8 99 0.0021 29.9 6.3 61 209-288 140-200 (230)
109 PF14874 PapD-like: Flagellar- 35.0 2.4E+02 0.0053 22.8 8.1 59 212-282 15-82 (102)
110 TIGR03079 CH4_NH3mon_ox_B meth 34.9 2.1E+02 0.0046 29.5 8.4 16 101-116 337-352 (399)
111 MTH00047 COX2 cytochrome c oxi 34.9 3.1E+02 0.0068 25.7 9.3 75 442-548 116-191 (194)
112 PRK10525 cytochrome o ubiquino 34.5 85 0.0018 31.9 5.7 63 209-290 151-213 (315)
113 MTH00051 COX2 cytochrome c oxi 31.9 1.4E+02 0.0031 28.9 6.7 61 209-288 144-204 (234)
114 MTH00047 COX2 cytochrome c oxi 31.5 3E+02 0.0066 25.8 8.6 75 57-146 117-193 (194)
115 MTH00185 COX2 cytochrome c oxi 30.8 1.7E+02 0.0036 28.4 6.9 61 209-288 140-200 (230)
116 COG3521 Predicted component of 29.8 2.2E+02 0.0049 25.7 7.0 25 98-123 88-112 (159)
117 COG3354 FlaG Putative archaeal 28.8 2.9E+02 0.0062 24.5 7.1 54 217-274 70-131 (154)
118 PF14326 DUF4384: Domain of un 28.3 2.9E+02 0.0064 21.6 8.3 24 213-236 3-26 (83)
119 PF14392 zf-CCHC_4: Zinc knuck 28.0 87 0.0019 22.0 3.3 41 498-538 4-45 (49)
120 TIGR01432 QOXA cytochrome aa3 27.9 1.2E+02 0.0027 28.9 5.5 75 442-548 130-205 (217)
121 COG1188 Ribosome-associated he 27.8 44 0.00096 27.6 2.0 29 47-75 36-64 (100)
122 PTZ00047 cytochrome c oxidase 27.3 3.9E+02 0.0084 24.3 8.0 75 441-547 72-147 (162)
123 COG4633 Plastocyanin domain co 26.7 3.6E+02 0.0078 25.9 7.9 90 38-148 79-173 (272)
124 TIGR00192 urease_beta urease, 26.4 2.1E+02 0.0045 23.7 5.5 59 57-115 12-82 (101)
125 MTH00098 COX2 cytochrome c oxi 25.9 3.8E+02 0.0083 25.8 8.4 75 441-547 139-214 (227)
126 PF05506 DUF756: Domain of unk 25.8 3.4E+02 0.0074 21.5 11.1 59 217-286 20-78 (89)
127 MTH00154 COX2 cytochrome c oxi 25.7 2.3E+02 0.005 27.3 6.9 61 209-288 140-200 (227)
128 MTH00117 COX2 cytochrome c oxi 25.4 2.5E+02 0.0054 27.1 7.1 60 210-288 141-200 (227)
129 PRK13203 ureB urease subunit b 25.4 2.2E+02 0.0047 23.6 5.5 59 57-115 12-82 (102)
130 MTH00129 COX2 cytochrome c oxi 25.2 3.6E+02 0.0077 26.1 8.1 75 441-547 139-214 (230)
131 PF07172 GRP: Glycine rich pro 24.6 57 0.0012 26.8 2.1 18 1-19 1-22 (95)
132 PF11614 FixG_C: IG-like fold 24.5 1.7E+02 0.0036 24.7 5.2 48 218-274 34-83 (118)
133 PF11142 DUF2917: Protein of u 24.3 2.1E+02 0.0045 21.4 4.9 51 211-267 2-54 (63)
134 PF09394 Inhibitor_I42: Chagas 23.8 1.5E+02 0.0033 23.5 4.6 62 58-123 1-67 (92)
135 MTH00076 COX2 cytochrome c oxi 23.5 2.5E+02 0.0054 27.1 6.7 60 210-288 141-200 (228)
136 PF11322 DUF3124: Protein of u 23.4 2E+02 0.0043 24.9 5.2 52 220-275 28-79 (125)
137 cd00407 Urease_beta Urease bet 22.9 2.8E+02 0.006 23.0 5.7 59 57-115 12-82 (101)
138 cd00916 Npc2_like Niemann-Pick 22.9 3E+02 0.0065 23.6 6.4 60 57-116 23-91 (123)
139 PF10989 DUF2808: Protein of u 22.0 1E+02 0.0022 27.4 3.5 28 507-534 98-129 (146)
140 COG3241 Azurin [Energy product 21.7 1.2E+02 0.0025 26.0 3.4 40 247-286 91-136 (151)
141 MTH00023 COX2 cytochrome c oxi 21.4 3.1E+02 0.0067 26.7 6.9 57 210-285 152-208 (240)
142 MTH00139 COX2 cytochrome c oxi 21.0 2.9E+02 0.0062 26.6 6.6 76 440-547 138-214 (226)
143 MTH00008 COX2 cytochrome c oxi 21.0 4.2E+02 0.0091 25.5 7.7 76 441-548 139-215 (228)
144 PF15240 Pro-rich: Proline-ric 20.3 67 0.0015 29.5 1.9 15 5-19 2-16 (179)
145 PRK13792 lysozyme inhibitor; P 20.1 5.8E+02 0.013 22.2 7.8 31 1-32 1-31 (127)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=5.6e-108 Score=884.97 Aligned_cols=538 Identities=59% Similarity=1.070 Sum_probs=437.0
Q ss_pred CceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCC
Q 008422 23 AAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQC 102 (566)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~ 102 (566)
+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.|+++++|||||++|.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeEEEEEeCCCCcceeEeecchhhcccceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHhcC
Q 008422 103 PITPGNSYTYKFRIVNQEGTLWWHAHFSMLRATVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATG 182 (566)
Q Consensus 103 ~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 182 (566)
+|+||++|+|+|++++++||||||||...++.||+|+|||+++.+.+++++..|+|++|+++||++....+++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998569999999999988878999999999987766777678899999999999998877766655556
Q ss_pred CCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEEC
Q 008422 183 GGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIA 262 (566)
Q Consensus 183 ~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~ 262 (566)
..+..++.++||||.++++.|+....+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667899999999888888988778899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCCcccccccccccCCCC
Q 008422 263 PGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN-PLMPVLPAFNDNPTAHRFYSNLTGLKGG 341 (566)
Q Consensus 263 pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~p~~~~~~~~~~~~~~l~~l~~~ 341 (566)
+||||||+|++++.+|+|||++....++... +......|||+|+++.... +..+..+.+++.+....+...++.+..+
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~-~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGA-FDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSA 319 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccC-CCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccccccc
Confidence 9999999999998889999999876544321 2334688999999864421 1122222233322211111233334333
Q ss_pred CCCCCCCCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCcccCCCCCCCCccc
Q 008422 342 PQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIF 421 (566)
Q Consensus 342 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~ 421 (566)
..+..+|..+++++++.+.+....... ..+....+..+.|.+|+.+|..|. .|+|++.+.+..|.+..+++..+|..|
T Consensus 320 ~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~-~p~l~~~~~~~~~~~~~~~~~~~p~~~ 397 (539)
T TIGR03389 320 QYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPT-TALLQAHYFGISGVFTTDFPANPPTKF 397 (539)
T ss_pred CCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCC-cchhhhhhcccCCccccCCccCCCccc
Confidence 334344556677777666543221100 001112345688999999998776 667777766556666666777778777
Q ss_pred ccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCC
Q 008422 422 DFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQ 501 (566)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~ 501 (566)
+++...... +.....+++++.+++|++|||+|+|.+......||||||||+||||++|.|.|+.......+|+.||+
T Consensus 398 ~~~~~~~~~---~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~ 474 (539)
T TIGR03389 398 NYTGTNLPN---NLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPP 474 (539)
T ss_pred cCCCCCccc---ccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCC
Confidence 655431000 01123356889999999999999997532345899999999999999999999865445578999999
Q ss_pred cceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008422 502 RRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPSTRLPPPPADLPQC 566 (566)
Q Consensus 502 ~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 566 (566)
+|||+.||++||++|||+|||||.|+|||||+||+..||+++|.+.++++..+++++||..+|+|
T Consensus 475 rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 475 ERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred eeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999999999998888788999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4.3e-106 Score=861.75 Aligned_cols=517 Identities=26% Similarity=0.397 Sum_probs=419.6
Q ss_pred cCCceEEEEEEEEEEEeccCc--eeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCC
Q 008422 21 ASAAIVEHTFHVKNLTIGRLC--RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSM 98 (566)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~ 98 (566)
|.+++++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|.++++|+|||||++|..++|+||+++
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~ 102 (596)
T PLN00044 23 AGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGG 102 (596)
T ss_pred cCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCC
Confidence 678899999999999999998 557899999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCC-cceeEEeceecccCHHHHHH
Q 008422 99 ITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPN-KEVPIILGEWWNADIIDVAK 176 (566)
Q Consensus 99 vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~~ 176 (566)
|||||+||++|+|+|++++++||||||+|...++. ||+|+|||++++..+.|+...+ +|.+|+++||++.+..++ .
T Consensus 103 -TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~ 180 (596)
T PLN00044 103 -TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-R 180 (596)
T ss_pred -CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-H
Confidence 99999999999999999669999999999999887 9999999999877666665444 799999999999886654 3
Q ss_pred HHHhcCCCCCCCceEEEcCCCCCC-CCCC----CCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCc
Q 008422 177 QAQATGGGPNISDAYTINGRPGDL-YPCS----QNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYT 251 (566)
Q Consensus 177 ~~~~~g~~~~~~~~~liNG~~g~~-~~~~----~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~ 251 (566)
.....|.....++.++|||+ |++ ++|. +...+.++|++|++|||||||++....+.|+|+||+|+|||+||.++
T Consensus 181 ~~l~~g~~~~~~d~~lING~-g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v 259 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAF-GPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYT 259 (596)
T ss_pred HHHhcCCCCCCCCceEEccc-CccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCccc
Confidence 34444544556889999999 543 3553 33456899999999999999999999999999999999999999999
Q ss_pred CcEEeeEEEECCCceEEEEEeeCCCCc-eeEEEeeec-ccCCCCCCCCcceEEEEEEcCCCCC-CCCCCCCCC-CCCCCc
Q 008422 252 EPYVTDVVVIAPGQTTDVLLKADQPVG-SYYMAARAY-ASAPQIPFDNTTTRGIVVYDGATTA-NPLMPVLPA-FNDNPT 327 (566)
Q Consensus 252 ~p~~~d~~~l~pgeR~dv~v~~~~~~G-~y~~~~~~~-~~~~~~~~~~~~~~ail~y~~~~~~-~~~~p~~p~-~~~~~~ 327 (566)
+|+.+|+|.|++||||||+|+++++++ +|||++... ..+. .+....+.|||+|+++... ...+|..+. +++...
T Consensus 260 ~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~--~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~ 337 (596)
T PLN00044 260 SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA--VVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAF 337 (596)
T ss_pred CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc--cccCcceeEEEEECCCCCCCCCCCCCCCcccCCchh
Confidence 999999999999999999999998765 899998642 2222 1344567899999886432 112455553 555544
Q ss_pred ccccccccccCCCCCCCCCCCCCcceEEEEEecccc-ccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccC
Q 008422 328 AHRFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGL-DRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVG 406 (566)
Q Consensus 328 ~~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~ 406 (566)
...+...++.+..++.+...|...++...+.+.... ..+.....| .+++.|++||.+|..|+ .++|.+++.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~s~Nnvsf~~p~-~p~L~a~~~~~~ 412 (596)
T PLN00044 338 SINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI----DGKLRATLNEISYIAPS-TPLMLAQIFNVP 412 (596)
T ss_pred hhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc----CCeEEEEECcccCCCCC-CcchhhhhccCC
Confidence 433444555444333333334333333333332111 111000011 13689999999999887 778877777777
Q ss_pred CcccCCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCC
Q 008422 407 GIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNF 486 (566)
Q Consensus 407 g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 486 (566)
|.|..++++.||.. ....++.++.+++|++|||+|+|... ..||||||||+|+||++|.|.|
T Consensus 413 gv~~~~fp~~pp~~---------------~~~~~t~v~~~~~n~~VeiV~qn~~~---~~HP~HLHGh~F~Vvg~G~G~~ 474 (596)
T PLN00044 413 GVFKLDFPNHPMNR---------------LPKLDTSIINGTYKGFMEIIFQNNAT---NVQSYHLDGYAFFVVGMDYGLW 474 (596)
T ss_pred CcccCCCCCCCCcc---------------ccccCceEEEcCCCCEEEEEEeCCCC---CCCCeeEcCccEEEEeecCCCC
Confidence 88888888777641 01235688999999999999999642 6899999999999999999999
Q ss_pred CcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCC-CCCCCCCCCCCCC
Q 008422 487 DAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTP-STRLPPPPADLPQ 565 (566)
Q Consensus 487 ~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~~p~~~~~ 565 (566)
++. ...+||+.||++||||.||++||++|||++||||+|+|||||+.|+..||.++|.|+++.+. .+++++||.+++.
T Consensus 475 ~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~ 553 (596)
T PLN00044 475 TDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIF 553 (596)
T ss_pred CCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCc
Confidence 965 45689999999999999999999999999999999999999999999999999999999876 7899999999999
Q ss_pred C
Q 008422 566 C 566 (566)
Q Consensus 566 c 566 (566)
|
T Consensus 554 C 554 (596)
T PLN00044 554 C 554 (596)
T ss_pred c
Confidence 9
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=3.5e-105 Score=850.59 Aligned_cols=505 Identities=28% Similarity=0.439 Sum_probs=405.0
Q ss_pred HHHHHhccccCCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCC
Q 008422 12 LVVLASSTLASAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSA 91 (566)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~ 91 (566)
+++|++...+.+++++|+|+|++...++||+++.+++|||++|||+|++++||+|+|+|+|.|+++|+|||||++|..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~ 94 (543)
T PLN02991 15 LLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNS 94 (543)
T ss_pred HHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCc
Confidence 33444444457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccC
Q 008422 92 WADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNAD 170 (566)
Q Consensus 92 ~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~ 170 (566)
|+||+++ +||||+||++|+|+|++++++||||||+|...++. ||+|+|||+++++.+.|+..+|+|++++++||++..
T Consensus 95 ~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~ 173 (543)
T PLN02991 95 YQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTN 173 (543)
T ss_pred cccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCC
Confidence 9999998 99999999999999998668999999999988877 999999999887666666677899999999999988
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCC
Q 008422 171 IIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACY 250 (566)
Q Consensus 171 ~~~~~~~~~~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~ 250 (566)
..++.... ..+...+.++.+||||| + ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+
T Consensus 174 ~~~~~~~~-~~~~~~~~~d~~liNG~-~--------~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~ 243 (543)
T PLN02991 174 HKDLRAQL-DNGGKLPLPDGILINGR-G--------SGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTH 243 (543)
T ss_pred HHHHHHHh-hcCCCCCCCCEEEEccC-C--------CCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcc
Confidence 76654333 34444568899999999 3 23679999999999999999999999999999999999999999
Q ss_pred cCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCCccc
Q 008422 251 TEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN-PLMPVLPAFNDNPTAH 329 (566)
Q Consensus 251 ~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~p~~~~~~~~~ 329 (566)
++|..++++.|++||||||+|++++++|+|||++...... ......|||+|+++.... .+.|..|. +.....
T Consensus 244 ~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~-----~~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~~~ 316 (543)
T PLN02991 244 TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS-----KILITTGVLHYSNSAGPVSGPIPDGPI--QLSWSF 316 (543)
T ss_pred ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC-----CCcceEEEEEeCCCCCCCCCCCCCCCc--cccccc
Confidence 9999999999999999999999999899999998864322 123578999999864321 12232221 111111
Q ss_pred ccccccccCCCCCCCCCCCCC--------cceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhh
Q 008422 330 RFYSNLTGLKGGPQWVPVPLQ--------VDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAF 401 (566)
Q Consensus 330 ~~~~~l~~l~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~ 401 (566)
.+....+....+..+...|.. .++.+.+...+. . ..+.+.|.+||.+|..|. .|+|.++
T Consensus 317 ~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~----~~g~~~~~iN~~s~~~p~-~p~L~~~ 383 (543)
T PLN02991 317 DQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG--------N----IEGKQRYAVNSASFYPAD-TPLKLAD 383 (543)
T ss_pred cchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc--------c----cCceEEEEECCCccCCCC-CChhhhh
Confidence 111001111111112222222 111121211111 0 123578999999999876 7787777
Q ss_pred hcccCCcccCC-CCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEE
Q 008422 402 FFNVGGIFTPD-FPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLA 480 (566)
Q Consensus 402 ~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~ 480 (566)
+.+.+|.|..+ +++.+|. ......+.++.+++|++|||+|+|... ..||||||||+||||+
T Consensus 384 ~~~~~g~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh~F~Vvg 445 (543)
T PLN02991 384 YFKIAGVYNPGSIPDQPTN---------------GAIFPVTSVMQTDYKAFVEIVFENWED---IVQTWHLDGYSFYVVG 445 (543)
T ss_pred hhcccCccccccccccCCC---------------CccccCCcEEEcCCCCEEEEEEeCCCC---CCCCeeeCCcceEEEE
Confidence 76667777543 3333332 012234578899999999999999643 6899999999999999
Q ss_pred eCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCC
Q 008422 481 QGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPSTRLPPPP 560 (566)
Q Consensus 481 ~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~~p 560 (566)
+|.|.|++. ....||+.||++|||+.||++||++|||+|||||+|+|||||..|+..||.++++|.++++..+++++||
T Consensus 446 ~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P 524 (543)
T PLN02991 446 MELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIP 524 (543)
T ss_pred eCCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCC
Confidence 999999875 4567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008422 561 ADLPQC 566 (566)
Q Consensus 561 ~~~~~c 566 (566)
.++++|
T Consensus 525 ~~~~~C 530 (543)
T PLN02991 525 KNALLC 530 (543)
T ss_pred cccCcc
Confidence 999999
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=3.5e-104 Score=844.33 Aligned_cols=507 Identities=24% Similarity=0.378 Sum_probs=407.3
Q ss_pred CCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCC
Q 008422 22 SAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQ 101 (566)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq 101 (566)
..++++|+|+|++...++||+.+.+++||||+|||+|++++||+|+|+|+|.|+++++|||||++|..++|+||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred CcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHh
Q 008422 102 CPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQA 180 (566)
Q Consensus 102 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 180 (566)
|||+||++|+|+|++++++||||||+|...++. ||+|+|||+++++.+.+++.+|+|++++++||++.....+.. ...
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-ILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-Hhh
Confidence 999999999999998668999999999998877 999999999876555666678889999999999988665433 333
Q ss_pred cCCC-CCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEE
Q 008422 181 TGGG-PNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVV 259 (566)
Q Consensus 181 ~g~~-~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~ 259 (566)
.+.. +..++.+||||+ ++. ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|
T Consensus 171 ~g~~~~~~~d~~liNG~-~~~------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQ-GVS------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEecc-CCC------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 4433 337899999999 432 24689999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q 008422 260 VIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLK 339 (566)
Q Consensus 260 ~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~ 339 (566)
.|+|||||||+|++++.+|+|+|++.....+. ...+.|||+|+++.......|..|.+++......+...++...
T Consensus 244 ~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~-----~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l 318 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA-----KVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNL 318 (536)
T ss_pred EEccCceEEEEEEcCCCCceEEEEEEeccCCC-----CCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhcc
Confidence 99999999999999988899999988643221 2357899999986543222333444444443333322233333
Q ss_pred CCCCCCCCCCCcceEEEEEecccc-ccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCcccCC-CCCCC
Q 008422 340 GGPQWVPVPLQVDEHMFVTVGLGL-DRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPD-FPDNP 417 (566)
Q Consensus 340 ~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~~-~~~~~ 417 (566)
.++.+..+|...++...+.+.... ..+. ... .++...|++||.+|..|. .++|.+++.+..|.++.+ ++..|
T Consensus 319 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~iN~~s~~~p~-~p~L~a~~~~~~g~~~~~~~~~~p 392 (536)
T PLN02792 319 TASGPRTNPQGSYHYGKMKISRTLILESS-AAL----VKRKQRYAINGVSFVPSD-TPLKLADHFKIKGVFKVGSIPDKP 392 (536)
T ss_pred CCCCCCCCCCcccccceeccceeEEeccc-ccc----cCceeEEEECCcccCCCC-CchhhhhhhccCCCcCcccCccCC
Confidence 322233344332222111111110 0000 000 123578999999999887 777777766666777553 56555
Q ss_pred CcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccC
Q 008422 418 PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNL 497 (566)
Q Consensus 418 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~ 497 (566)
|..++ ...++.++.+++|++|||+|+|... ..||||||||+||||++|.|.|++. ...+||+
T Consensus 393 ~~~~~--------------~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl 454 (536)
T PLN02792 393 RRGGG--------------MRLDTSVMGAHHNAFLEIIFQNREK---IVQSYHLDGYNFWVVGINKGIWSRA-SRREYNL 454 (536)
T ss_pred cccCC--------------CccCceEEEcCCCCEEEEEEECCCC---CCCCeeeCCCceEEEeecCCCCCcc-cccccCc
Confidence 54211 1235688899999999999999643 6899999999999999999999874 4568999
Q ss_pred CCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008422 498 VNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPSTRLPPPPADLPQC 566 (566)
Q Consensus 498 ~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 566 (566)
.||++||||.||++||++|||+|||||+|+|||||++|+..||.++|.|+++.+..+++++||.+++.|
T Consensus 455 ~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 455 KDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred CCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999999999999999999999889999999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=6.1e-104 Score=845.62 Aligned_cols=497 Identities=26% Similarity=0.406 Sum_probs=394.4
Q ss_pred cCCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCC
Q 008422 21 ASAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMIT 100 (566)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vt 100 (566)
+.+++|+|+|+|++...++||+++.+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++..++||||+++ +
T Consensus 25 ~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-t 103 (539)
T PLN02835 25 GEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-T 103 (539)
T ss_pred ccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-C
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHH
Q 008422 101 QCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQ 179 (566)
Q Consensus 101 q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 179 (566)
||||+||++|+|+|++++++||||||||...++. ||+|+|||+++++.+.+++.+|+|++++++||++....++... .
T Consensus 104 Q~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~ 182 (539)
T PLN02835 104 NCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-L 182 (539)
T ss_pred cCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-h
Confidence 9999999999999998678999999999988887 9999999987655556666789999999999999987665433 3
Q ss_pred hcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEE
Q 008422 180 ATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVV 259 (566)
Q Consensus 180 ~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~ 259 (566)
..|.....++.+||||+. .+.++|++|++|||||||+|....+.|+|+||+|+||++||.+++|..+++|
T Consensus 183 ~~g~~~~~~d~~liNG~~----------~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l 252 (539)
T PLN02835 183 DSGKVLPFPDGVLINGQT----------QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSL 252 (539)
T ss_pred hcCCCCCCCceEEEcccc----------CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEE
Confidence 345555678999999993 3579999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCC-CCCCCCCCCCC---CCCccccccccc
Q 008422 260 VIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTA-NPLMPVLPAFN---DNPTAHRFYSNL 335 (566)
Q Consensus 260 ~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~-~~~~p~~p~~~---~~~~~~~~~~~l 335 (566)
.|++||||||+|++++++|+|||++.....+ ......|||+|+++... +..+|..|... +...+......+
T Consensus 253 ~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~-----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l 327 (539)
T PLN02835 253 DVHVGQSVAVLVTLNQSPKDYYIVASTRFTR-----QILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNL 327 (539)
T ss_pred EECcCceEEEEEEcCCCCCcEEEEEEccccC-----CCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhcccccc
Confidence 9999999999999998889999998642222 12457899999886432 11233222210 000011111111
Q ss_pred ccCCCCCCCCC---C-CCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCcccC
Q 008422 336 TGLKGGPQWVP---V-PLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTP 411 (566)
Q Consensus 336 ~~l~~~~~~~~---~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~ 411 (566)
.+....+.+.. . ....++++.+..... . ..+...|.+||.+|..|. .|+|.+++.+.+|.|+.
T Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~g~~~w~iN~~s~~~p~-~P~L~~~~~~~~~~~~~ 394 (539)
T PLN02835 328 TASAARPNPQGSFHYGKITPTKTIVLANSAP--------L----INGKQRYAVNGVSYVNSD-TPLKLADYFGIPGVFSV 394 (539)
T ss_pred CccccCCCCCccccccccCCCceEEEecccc--------c----cCCeEEEEECCcccCCCC-CChhhhhhhcCCCcccc
Confidence 11111110000 0 001133333222111 0 123578999999998876 66666665555555543
Q ss_pred CCC-CCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCccc
Q 008422 412 DFP-DNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAAR 490 (566)
Q Consensus 412 ~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 490 (566)
... ..++. ...+.+++++.+++|++|||+|+|... ..||||||||+||||++|.|.|++.
T Consensus 395 ~~~~~~~~~---------------~~~~~~t~~~~~~~~~~Veivi~N~~~---~~HP~HLHGh~F~Vlg~G~g~~~~~- 455 (539)
T PLN02835 395 NSIQSLPSG---------------GPAFVATSVMQTSLHDFLEVVFQNNEK---TMQSWHLDGYDFWVVGYGSGQWTPA- 455 (539)
T ss_pred CccccCCCC---------------CccccCCeEEEcCCCCEEEEEEECCCC---CCCCCCCCCccEEEEeccCCCCCcc-
Confidence 311 11110 113345788999999999999999753 6899999999999999999999864
Q ss_pred ccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008422 491 DRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPSTRLPPPPADLPQC 566 (566)
Q Consensus 491 ~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 566 (566)
....+|+.||++||||.||++||++|||+|||||.|+|||||++|+..||+++|+|+++.+..+++++||.++|.|
T Consensus 456 ~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 456 KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 2456799999999999999999999999999999999999999999999999999999999889999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.3e-103 Score=842.15 Aligned_cols=504 Identities=25% Similarity=0.412 Sum_probs=398.2
Q ss_pred cCCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCC
Q 008422 21 ASAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMIT 100 (566)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vt 100 (566)
+.+++++|+|+|++...++||+++.+++||||+|||+|++++||+|+|+|+|.++++|+|||||++|..++|+||+|+ |
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-T 101 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-T 101 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-C
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHH
Q 008422 101 QCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQ 179 (566)
Q Consensus 101 q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 179 (566)
||||+||++|+|+|++.+++||||||+|...++. ||+|+|||+++.+.+.+++.+++|++++++||++....++.. ..
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 180 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK-FL 180 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-HH
Confidence 9999999999999998568999999999998887 999999999887666677667889999999999998666443 33
Q ss_pred hcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEE
Q 008422 180 ATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVV 259 (566)
Q Consensus 180 ~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~ 259 (566)
..+.....++.+||||+.+..+ +...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~---~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l 257 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGD---GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSL 257 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCC---CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEE
Confidence 3444445678999999954322 1245789999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCCccc----ccccc
Q 008422 260 VIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN-PLMPVLPAFNDNPTAH----RFYSN 334 (566)
Q Consensus 260 ~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~p~~~~~~~~~----~~~~~ 334 (566)
.|++||||||+|++++++|+|||++.....+ ......|||+|+++.... +..|..+. +..... .+...
T Consensus 258 ~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~ 330 (552)
T PLN02354 258 DVHVGQCFSVLVTANQAPKDYYMVASTRFLK-----KVLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSFRWN 330 (552)
T ss_pred EEccCceEEEEEECCCCCCcEEEEEeccccC-----CCccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhhhhc
Confidence 9999999999999998889999998753222 124578999998864321 11222111 110011 11111
Q ss_pred cccCCCCCCCCCC----CCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhccc-CCcc
Q 008422 335 LTGLKGGPQWVPV----PLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNV-GGIF 409 (566)
Q Consensus 335 l~~l~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~-~g~~ 409 (566)
+.+....+.+... ....++++.+...+. . ..+...|.+||.+|..|. .|+|.+.+.+. .|.+
T Consensus 331 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~g~~~~~iNn~s~~~p~-~P~L~~~~~~~~~g~~ 397 (552)
T PLN02354 331 LTASAARPNPQGSYHYGKINITRTIKLVNSAS--------K----VDGKLRYALNGVSHVDPE-TPLKLAEYFGVADKVF 397 (552)
T ss_pred ccccccCCCCCCccccccccccceEEEecccc--------c----CCceEEEEECCccCCCCC-CChHHhhhhcccCCcc
Confidence 2211111101000 011222232222111 0 123578999999999887 67766655433 3555
Q ss_pred cCC-CCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCc
Q 008422 410 TPD-FPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDA 488 (566)
Q Consensus 410 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~ 488 (566)
+.+ ++..+|..++ ....++.++.+++|++|||+|+|... ..||||||||+||||++|.|.|++
T Consensus 398 ~~~~~~~~pp~~~~-------------~~~~~~~v~~~~~~~~VeiVi~n~~~---~~HP~HLHGh~F~Vlg~G~G~~~~ 461 (552)
T PLN02354 398 KYDTIKDNPPAKIT-------------KIKIQPNVLNITFRTFVEIIFENHEK---SMQSWHLDGYSFFAVAVEPGTWTP 461 (552)
T ss_pred ccCccccCCccccC-------------ccccCCeeEEcCCCCEEEEEEeCCCC---CCCCCcCCCccEEEEeecCCCCCc
Confidence 433 3334443211 12345688899999999999999643 689999999999999999999987
Q ss_pred ccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008422 489 ARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPSTRLPPPPADLPQC 566 (566)
Q Consensus 489 ~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 566 (566)
. ...++|+.||++|||+.||++||++|||+|||||+|+|||||+.|+..||.+.|.|.++++..++++++|.+.+.|
T Consensus 462 ~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 462 E-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred c-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 5 3467999999999999999999999999999999999999999999999999999999888888888899999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.2e-103 Score=837.25 Aligned_cols=513 Identities=25% Similarity=0.424 Sum_probs=399.3
Q ss_pred HHHHHHHHHHH-HhccccCCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEe
Q 008422 5 TLLLACALVVL-ASSTLASAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWH 83 (566)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~H 83 (566)
-+++++.+++| +|.+ .+++|+|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|.|+++|+||||
T Consensus 7 ~~~~~~~~~~~~~~~~--~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWH 84 (545)
T PLN02168 7 EVFVLISLVILELSYA--FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWN 84 (545)
T ss_pred hHHHHHHHHHHHhhhc--cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeC
Confidence 45667777777 4444 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEE
Q 008422 84 GIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPII 162 (566)
Q Consensus 84 G~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 162 (566)
|+++..++||||+++ |||||+||++|+|+|++++++||||||||...++. ||+|+|||+++++.+.+++.+++|++|+
T Consensus 85 Gl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~ 163 (545)
T PLN02168 85 GLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDIL 163 (545)
T ss_pred CccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEE
Confidence 999999999999999 99999999999999998568999999999998887 9999999999877666766788999999
Q ss_pred eceecccCHHHHHHHHHhcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEE
Q 008422 163 LGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFT 242 (566)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~ 242 (566)
++||++.....+.. ....+.....++.+||||+ ++ ..+.+++++|++|||||||+|....+.|+|+||+|+
T Consensus 164 l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~-~~-------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~t 234 (545)
T PLN02168 164 IGDWFYADHTVMRA-SLDNGHSLPNPDGILFNGR-GP-------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDML 234 (545)
T ss_pred EEecCCCCHHHHHh-hhhcCCCCCCCCEEEEecc-CC-------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEE
Confidence 99999987554432 2233433457889999999 32 346899999999999999999999999999999999
Q ss_pred EEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCC-c---eeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC-CCCC
Q 008422 243 VVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPV-G---SYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN-PLMP 317 (566)
Q Consensus 243 via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~-G---~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p 317 (566)
||++||.+++|..+++|.|++||||||+|++++.+ | +|||++.....+. ...+.|||+|+++...+ .+.|
T Consensus 235 VIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~-----~~~~~ail~Y~~~~~~~~~p~p 309 (545)
T PLN02168 235 LVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA-----YLGGVALIRYPNSPLDPVGPLP 309 (545)
T ss_pred EEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC-----CcceEEEEEECCCCCCCCCCCC
Confidence 99999999999999999999999999999998644 4 8999998743322 24578999998864431 1233
Q ss_pred CCCCCCCCCcccccccccccCCCCCCCCCCCCC--------cceEEEEEeccccccCCCCCccccCCCCeeeEeeccccc
Q 008422 318 VLPAFNDNPTAHRFYSNLTGLKGGPQWVPVPLQ--------VDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSF 389 (566)
Q Consensus 318 ~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~ 389 (566)
..|.+++..........++....+..+...|.. .+.++.+... ... ..+...|.+||.+|
T Consensus 310 ~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~----------~~g~~~~~iN~~s~ 377 (545)
T PLN02168 310 LAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHND--VML----------SSGKLRYTINGVSF 377 (545)
T ss_pred CCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEeccc--ccc----------cCceEEEEECCCcc
Confidence 334443332222222222211112112222221 1122211110 000 12357899999999
Q ss_pred cCCCCcchhhhhhcccCCcccCC-CCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCc
Q 008422 390 QPPTSLSLLQAFFFNVGGIFTPD-FPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHP 468 (566)
Q Consensus 390 ~~p~~~~ll~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP 468 (566)
..|. .|+|.+.+....+.+..+ ++..||. .....++.++.+++|++|||+|+|... ..||
T Consensus 378 ~~p~-~P~l~~~~~~~~~~~~~~~~~~~p~~---------------~~~~~~~~v~~~~~~~~VeiViqn~~~---~~HP 438 (545)
T PLN02168 378 VYPG-TPLKLVDHFQLNDTIIPGMFPVYPSN---------------KTPTLGTSVVDIHYKDFYHIVFQNPLF---SLES 438 (545)
T ss_pred CCCC-CchhhhhhcccccccccCCCccCCCc---------------CccccCceEEEecCCCEEEEEEeCCCC---CCCC
Confidence 9887 556555544332323222 2333321 001224678899999999999999643 6899
Q ss_pred eeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEec
Q 008422 469 MHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548 (566)
Q Consensus 469 ~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~ 548 (566)
||||||+||||++|.|.|++. ....+|+.||++|||+.||++||++|||+|||||.|+|||||++|++.||.+.|+|++
T Consensus 439 ~HLHGh~F~Vvg~g~g~~~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~ 517 (545)
T PLN02168 439 YHIDGYNFFVVGYGFGAWSES-KKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKG 517 (545)
T ss_pred eeeCCCceEEEECCCCCCCcc-ccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEc
Confidence 999999999999999999865 2457899999999999999999999999999999999999999999999999888865
Q ss_pred CCC------CCCCCCCCCCCCCCC
Q 008422 549 GPT------PSTRLPPPPADLPQC 566 (566)
Q Consensus 549 ~~~------~~~~~~~~p~~~~~c 566 (566)
+++ ..+++++||+++++|
T Consensus 518 ~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 518 EGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred ccccCccccccccccCCChhhccc
Confidence 443 246788999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-101 Score=814.03 Aligned_cols=530 Identities=48% Similarity=0.838 Sum_probs=466.4
Q ss_pred HhccccCCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCC
Q 008422 16 ASSTLASAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADG 95 (566)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG 95 (566)
.....+.++++.|+++++...+.++|.++.++++||++|||+|+|++||+|+|+|.|.++++++|||||++|..+.|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 33344689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceeccc-CHHH
Q 008422 96 PSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNA-DIID 173 (566)
Q Consensus 96 ~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~ 173 (566)
+.+|||||+||++|+|+|+++++.||||||+|...+++ |++|+|||+++...++|++.+|+|++|+++||+.+ ...+
T Consensus 99 -~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 99 -VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred -CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 89999999999999999999779999999999999998 99999999999988889989999999999999996 7777
Q ss_pred HHHHHHhcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCc
Q 008422 174 VAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEP 253 (566)
Q Consensus 174 ~~~~~~~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p 253 (566)
+.......+..+..+|..+|||+.|..++| .+.++|++||+|||||+|+|....+.|+|.+|+|+|+++||.+++|
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p 253 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKP 253 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEee
Confidence 776666666666669999999999888888 6899999999999999999999999999999999999999999999
Q ss_pred EEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCC---C-CCCCCCCCCCCCCccc
Q 008422 254 YVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTA---N-PLMPVLPAFNDNPTAH 329 (566)
Q Consensus 254 ~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~---~-~~~p~~p~~~~~~~~~ 329 (566)
..+++|.|.||||++|+|++++.+++|+|.+....++..-.+ .....++++|.++... . +..+.++..++...+.
T Consensus 254 ~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~ 332 (563)
T KOG1263|consen 254 FTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWST 332 (563)
T ss_pred eeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhh
Confidence 999999999999999999999999999999998776653233 5678999999984322 1 1233455556666666
Q ss_pred ccccccccCCCCCCCCCCCCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCcc
Q 008422 330 RFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIF 409 (566)
Q Consensus 330 ~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~ 409 (566)
.+...++.+.....+..+|.+.++....+...+...|+... ..+++..+++|+.+|..|+++.+|..++...+|.+
T Consensus 333 ~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~ 408 (563)
T KOG1263|consen 333 YQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYF 408 (563)
T ss_pred hhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhhhhhhccCCccc
Confidence 77777777766666777888888777777766665553211 24668899999999999997778888888888888
Q ss_pred cCCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcc
Q 008422 410 TPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAA 489 (566)
Q Consensus 410 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~ 489 (566)
..+++..|+..|++++ .+.++.++.++++++|||+|+|.+......||||||||+|+|++.|.|.|++.
T Consensus 409 ~~d~p~~P~~~~~~~~-----------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~ 477 (563)
T KOG1263|consen 409 TNDFPDKPPIKFDYTG-----------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPA 477 (563)
T ss_pred cCccCCCCccccCCcc-----------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcC
Confidence 8888888877665543 35678999999999999999998876677899999999999999999999994
Q ss_pred ccc-ccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008422 490 RDR-QKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPSTRLPPPPADLPQC 566 (566)
Q Consensus 490 ~~~-~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 566 (566)
.+. ..||+.+|+.||||.|||+||++|||.|||||+|+|||||++|+..||.++|+|.++.+..+++.+||.++++|
T Consensus 478 ~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 478 KDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred cChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 344 78999999999999999999999999999999999999999999999999999999999889999999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2.6e-98 Score=808.91 Aligned_cols=510 Identities=33% Similarity=0.574 Sum_probs=383.8
Q ss_pred CCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCCCCC
Q 008422 22 SAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPSMIT 100 (566)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~~vt 100 (566)
.+++|+|+|++++..+++||+++.+++|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++.++.|+||+++++
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 578999999999999999999999999999999999999999999999999997 7899999999999999999999999
Q ss_pred CCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHH
Q 008422 101 QCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQ 179 (566)
Q Consensus 101 q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 179 (566)
||+|+||++|+|+|++ +++||||||||...+.. ||+|+|||+++.+...++ .+|+|++|+++||++....+......
T Consensus 100 q~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 100 QCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred cCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhc
Confidence 9999999999999998 89999999999998877 999999999765443333 47899999999999986543322221
Q ss_pred hc-CCCCCCCceEEEcCCCCCCCCCC-------------------CC-CeeEEEEECCcEEEEEEEecccCceEEEEEcC
Q 008422 180 AT-GGGPNISDAYTINGRPGDLYPCS-------------------QN-QTYTLKVETGKTYLLRIINAALNNQLFFKIAN 238 (566)
Q Consensus 180 ~~-g~~~~~~~~~liNG~~g~~~~~~-------------------~~-~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~g 238 (566)
.. ......++.+||||+ |+ +.|. +. ....++|++|++|||||||+|+.+.+.|+|+|
T Consensus 178 ~~~~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idg 255 (574)
T PLN02191 178 SKPMRWIGEAQSILINGR-GQ-FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQG 255 (574)
T ss_pred cCCCCcCCCCCceEECCC-CC-CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECC
Confidence 11 111245789999998 64 3442 11 22369999999999999999999999999999
Q ss_pred CeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCC-ceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC-C--
Q 008422 239 HNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPV-GSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN-P-- 314 (566)
Q Consensus 239 h~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~-G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~-- 314 (566)
|+|+|||+||.+++|+.+++|.|++||||||+|++++++ ++||||+.....+. ......|||+|++..... +
T Consensus 256 H~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~----~~~~~~ail~Y~~~~~~~~p~~ 331 (574)
T PLN02191 256 HKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP----NTTQALTILNYVTAPASKLPSS 331 (574)
T ss_pred CeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC----CCCCceEEEEECCCCCCCCCCC
Confidence 999999999999999999999999999999999999876 58999997643332 122356999998754421 1
Q ss_pred CCCCCCCCCCCCcccccccccccCCCCCCCCCCCC-CcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCC
Q 008422 315 LMPVLPAFNDNPTAHRFYSNLTGLKGGPQWVPVPL-QVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPT 393 (566)
Q Consensus 315 ~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~ 393 (566)
..|..|.+++..........+ +.....+ ..|. ..+.++.+.... . ..+...|.+|+.+|..|.
T Consensus 332 ~~~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~--~-----------~~~~~~~~~n~~s~~~p~ 395 (574)
T PLN02191 332 PPPVTPRWDDFERSKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQN--L-----------IDGYTKWAINNVSLVTPA 395 (574)
T ss_pred CCCCCCcccccchhhcccccc--cccccCC-CCCCcccceEEEecccc--e-----------eCCeEEEEECcccCcCCC
Confidence 112223333322221111111 1100001 1222 234444332111 0 123468999999998776
Q ss_pred CcchhhhhhcccCCcccCCCCCCC-CcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCcc---CCCCCce
Q 008422 394 SLSLLQAFFFNVGGIFTPDFPDNP-PLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALV---VLENHPM 469 (566)
Q Consensus 394 ~~~ll~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~---~~~~HP~ 469 (566)
.|+|.+.+.+..+.|....+... +..|..... ......+.++.++.+++|++|||+|+|.... ....|||
T Consensus 396 -~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~ 469 (574)
T PLN02191 396 -TPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNP-----PPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPW 469 (574)
T ss_pred -cchHHHHhhccCcccccCCCcccccccccccCC-----CccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCE
Confidence 56666655554454443322111 111211110 0001123456789999999999999996411 2478999
Q ss_pred eeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecC
Q 008422 470 HVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENG 549 (566)
Q Consensus 470 HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~ 549 (566)
|||||+||||++|.|.|++......+|+.||++|||+.||++||++|||+|||||.|+|||||+||+..||+++|.. +
T Consensus 470 HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e--~ 547 (574)
T PLN02191 470 HLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAE--G 547 (574)
T ss_pred EeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEec--C
Confidence 99999999999999999875444678999999999999999999999999999999999999999999999999963 2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008422 550 PTPSTRLPPPPADLPQC 566 (566)
Q Consensus 550 ~~~~~~~~~~p~~~~~c 566 (566)
.++++.+|.+++.|
T Consensus 548 ---~~~~~~~p~~~~~C 561 (574)
T PLN02191 548 ---LNRIGKIPDEALGC 561 (574)
T ss_pred ---hhhccCCCcchhhh
Confidence 23566688889999
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.6e-97 Score=805.00 Aligned_cols=529 Identities=34% Similarity=0.559 Sum_probs=397.7
Q ss_pred HHHHHHHHHHHHhccccCCceEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCC-CCceeEEEe
Q 008422 5 TLLLACALVVLASSTLASAAIVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKS-PYNLTIHWH 83 (566)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l-~~~~~iH~H 83 (566)
.++|+++.++.... +.+++|+|+|+|++...++||+.+.+|+|||++|||+|++++||+|+|+|+|.+ +++++||||
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~H 83 (566)
T PLN02604 6 ALFFLLFSVLNFPA--AEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWH 83 (566)
T ss_pred hHHHHHHHHHHhhh--ccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeC
Confidence 34445544444433 368999999999999999999999999999999999999999999999999998 589999999
Q ss_pred CccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEE
Q 008422 84 GIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPII 162 (566)
Q Consensus 84 G~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 162 (566)
|+++.+..|+||+++++||+|+||++++|+|++ +++||||||||...++. ||+|+|||+++.++..++ .+|+|.+|+
T Consensus 84 G~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~ 161 (566)
T PLN02604 84 GIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSII 161 (566)
T ss_pred CCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEE
Confidence 999999999999999999999999999999998 89999999999988877 999999999887655555 368899999
Q ss_pred eceecccCHHHHHHHHHhcC-CCCCCCceEEEcCCCCCCCCCCC-----------------CCeeEEEEECCcEEEEEEE
Q 008422 163 LGEWWNADIIDVAKQAQATG-GGPNISDAYTINGRPGDLYPCSQ-----------------NQTYTLKVETGKTYLLRII 224 (566)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~g-~~~~~~~~~liNG~~g~~~~~~~-----------------~~~~~~~v~~G~~~rlRli 224 (566)
++||++....+......... .....++..+|||+ |+ +.|.. ...+.+++++|++||||||
T Consensus 162 l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlI 239 (566)
T PLN02604 162 LTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGK-GR-YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRIS 239 (566)
T ss_pred eeccccCCHHHHHHhhccCCCccCCCCCceEEcCC-CC-CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEE
Confidence 99999988765544322111 11135789999999 64 34431 1345789999999999999
Q ss_pred ecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCc-eeEEEeeecccCCCCCCCCcceEEE
Q 008422 225 NAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVG-SYYMAARAYASAPQIPFDNTTTRGI 303 (566)
Q Consensus 225 N~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G-~y~~~~~~~~~~~~~~~~~~~~~ai 303 (566)
|+|+.+.+.|+|+||+|+|||+||.+++|+++++|.|++||||||+|++++++| +|||++.....+. ....+.||
T Consensus 240 Na~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~----~~~~~~aI 315 (566)
T PLN02604 240 SLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN----TTPPGLAI 315 (566)
T ss_pred eccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC----CCcceeEE
Confidence 999999999999999999999999999999999999999999999999998775 8999987654332 12457899
Q ss_pred EEEcCCCCC--CC-CCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCcceEEEEEeccccccCCCCCccccCCCCee
Q 008422 304 VVYDGATTA--NP-LMPVLPAFNDNPTAHRFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRN 380 (566)
Q Consensus 304 l~y~~~~~~--~~-~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (566)
|+|++.... ++ ..+..+.+++..........+..+.. .+...+...++++.+...... .++.+
T Consensus 316 L~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~~ 381 (566)
T PLN02604 316 FNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGYR 381 (566)
T ss_pred EEECCCCCCCCCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCeE
Confidence 999864321 11 11111222221111111111111111 011123345666554322211 12357
Q ss_pred eEeeccccccCCCCcchhhhhhcccCCcccCCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCC
Q 008422 381 SASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTA 460 (566)
Q Consensus 381 ~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~ 460 (566)
.|.+|+.+|..|. .|+|...+.+..+.|+.+ .+|..+....-......++.....+..++.++.|++||++|+|..
T Consensus 382 ~w~in~~~~~~p~-~p~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~ 457 (566)
T PLN02604 382 RWSVNNVSFNLPH-TPYLIALKENLTGAFDQT---PPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNAN 457 (566)
T ss_pred EEEECcccCCCCC-CchhHhhhhcCCCcccCC---CCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCc
Confidence 8999999998776 566666555444555321 122211110000000001112334567899999999999999974
Q ss_pred cc---CCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccc
Q 008422 461 LV---VLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLP 537 (566)
Q Consensus 461 ~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~ 537 (566)
.. ....||||||||+||||++|.|.|++..+...+|+.||++|||+.||++||++|||+|||||.|+|||||+||+.
T Consensus 458 ~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~ 537 (566)
T PLN02604 458 TMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFF 537 (566)
T ss_pred cccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhh
Confidence 21 246899999999999999999999876556789999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008422 538 WGLATAFVVENGPTPSTRLPPPPADLPQC 566 (566)
Q Consensus 538 ~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 566 (566)
.||+++|.+. .++++.+|.++++|
T Consensus 538 ~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 538 MGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred cCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 9999999753 34688899999999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=6.6e-97 Score=798.11 Aligned_cols=508 Identities=32% Similarity=0.568 Sum_probs=386.9
Q ss_pred eEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCCCCCCCc
Q 008422 25 IVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPSMITQCP 103 (566)
Q Consensus 25 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~~vtq~~ 103 (566)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.++.||||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999985 8899999999999999999999999999
Q ss_pred CCCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHhcC
Q 008422 104 ITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATG 182 (566)
Q Consensus 104 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 182 (566)
|+||++++|+|++ +++||||||||...++. ||+|+|||+++.++..++ .+|+|++|+++||++....+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 89999999999988877 999999999886554454 47899999999999987655433222111
Q ss_pred -CCCCCCceEEEcCCCCCCCCCCC------------------C-CeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEE
Q 008422 183 -GGPNISDAYTINGRPGDLYPCSQ------------------N-QTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFT 242 (566)
Q Consensus 183 -~~~~~~~~~liNG~~g~~~~~~~------------------~-~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~ 242 (566)
.....++.++|||+ |+ +.|.. . ....++|++|++|||||||+|..+.+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGR-GQ-FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCC-CC-CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 11135689999999 64 33421 1 224589999999999999999999999999999999
Q ss_pred EEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCC-ceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC---CCCCC
Q 008422 243 VVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPV-GSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN---PLMPV 318 (566)
Q Consensus 243 via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~-G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~---~~~p~ 318 (566)
|||+||.+++|+.+++|.|++||||||+|++++.+ |+|||++.....+. ......|||+|+++.... .+.+.
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~----~~~~~~aiL~Y~~~~~~~~p~~~~~~ 312 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP----NTPPGLTVLNYYPNSPSRLPPTPPPV 312 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC----CCccEEEEEEECCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999998766 48999988654422 223578999998754321 11222
Q ss_pred CCCCCCCCcccccccccccCCCCCCCCCCCCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchh
Q 008422 319 LPAFNDNPTAHRFYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLL 398 (566)
Q Consensus 319 ~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll 398 (566)
.+.+.+....... .+..+.... ....|..+++++++...... ..+...|.+||.+|..|. .|+|
T Consensus 313 ~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~p~-~p~l 376 (541)
T TIGR03388 313 TPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTLPH-TPYL 376 (541)
T ss_pred CCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCCCC-ccHH
Confidence 3333332222111 111111101 11233455666654332210 123467999999998776 5666
Q ss_pred hhhhcccCCcccCCCC-CCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCcc---CCCCCceeeeCC
Q 008422 399 QAFFFNVGGIFTPDFP-DNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALV---VLENHPMHVHGF 474 (566)
Q Consensus 399 ~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~---~~~~HP~HlHG~ 474 (566)
...+.+..+.+....+ ...+..|.... +......+.++.++.+++|++|||+|+|.... ....||||||||
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh 451 (541)
T TIGR03388 377 GSLKYNLLNAFDQKPPPENYPRDYDIFK-----PPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGH 451 (541)
T ss_pred HHHhhcCCccccCCCCcccccccccccC-----CCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCC
Confidence 5554433333321110 01111111110 00111234567889999999999999996421 246899999999
Q ss_pred cEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCC
Q 008422 475 DFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENGPTPST 554 (566)
Q Consensus 475 ~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~~~~~~ 554 (566)
+||||++|.|.|+...+...+|+.||++|||+.||++||++|||+|||||.|+|||||+||++.||+++|.+. .+
T Consensus 452 ~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~ 526 (541)
T TIGR03388 452 DFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VE 526 (541)
T ss_pred ceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----cc
Confidence 9999999999998654556799999999999999999999999999999999999999999999999999753 34
Q ss_pred CCCCCCCCCCCC
Q 008422 555 RLPPPPADLPQC 566 (566)
Q Consensus 555 ~~~~~p~~~~~c 566 (566)
+++.+|.++++|
T Consensus 527 ~~~~~P~~~~~C 538 (541)
T TIGR03388 527 KVGKLPKEALGC 538 (541)
T ss_pred ccCCCCccccCC
Confidence 678899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=5.5e-93 Score=765.21 Aligned_cols=488 Identities=26% Similarity=0.458 Sum_probs=370.7
Q ss_pred EEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCCCCCCCcC
Q 008422 26 VEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPSMITQCPI 104 (566)
Q Consensus 26 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~~vtq~~i 104 (566)
-.|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|.|+ ++|+|||||+++..++|+||+|++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeeEEEEEeC-CCCcceeEeecchhhcccceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHhcCC
Q 008422 105 TPGNSYTYKFRIV-NQEGTLWWHAHFSMLRATVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGG 183 (566)
Q Consensus 105 ~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 183 (566)
+||++|+|+|+++ +++||||||||...++.||+|+|||++++..++ .+|+|++|+++||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999984 589999999999888779999999998764332 468899999999999987776544332221
Q ss_pred -CCCCCceEEEcCCCCCCCCC----C---CCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCe-EEEEEecCCCcCcE
Q 008422 184 -GPNISDAYTINGRPGDLYPC----S---QNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHN-FTVVAIDACYTEPY 254 (566)
Q Consensus 184 -~~~~~~~~liNG~~g~~~~~----~---~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~-~~via~DG~~~~p~ 254 (566)
....++.++||||.+.. .| + ....+.++|++|++|||||||+|....+.|+|+||+ |+|||+||.+++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~-~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNK-SFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCccccc-cccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 12356899999995432 21 0 113578999999999999999999999999999999 99999999999999
Q ss_pred EeeEEEECCCceEEEEEeeCCC-------CceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCC
Q 008422 255 VTDVVVIAPGQTTDVLLKADQP-------VGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTAN-PLMPVLPAFNDNP 326 (566)
Q Consensus 255 ~~d~~~l~pgeR~dv~v~~~~~-------~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~p~~~~~~ 326 (566)
.+++|.|++||||||+|++++. +|+||||+.....+. .....|||+|+++...+ +..|..+......
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~-----~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~ 319 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK-----VYRGYAVLRYRSDKASKLPSVPETPPLPLPN 319 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC-----cceEEEEEEeCCCCCCCCCCCCCCCCCCccC
Confidence 9999999999999999999964 489999987654322 23478999998654321 1112222111100
Q ss_pred cc-cccccccccCCCCCCC-CCCCCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccC--CCCcchhhhhh
Q 008422 327 TA-HRFYSNLTGLKGGPQW-VPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQP--PTSLSLLQAFF 402 (566)
Q Consensus 327 ~~-~~~~~~l~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~~~~ll~~~~ 402 (566)
.. ......|.++.....+ .+.+..+++++.+.+.+.... ..+...|.+||.+|.. +. .|+|...+
T Consensus 320 ~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~~g~~~~~~N~~s~~~~~~~-~P~L~~~~ 388 (538)
T TIGR03390 320 STYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------LNGRVAWLQNGLSWTESVRQ-TPYLVDIY 388 (538)
T ss_pred cchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------cCCeEEEEECCcccCCCCCC-CchHHHHh
Confidence 00 0111123333211101 112345677776665543210 1235789999999975 44 56655544
Q ss_pred cccCCcccCCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCcc-----CCCCCceeeeCCcEE
Q 008422 403 FNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALV-----VLENHPMHVHGFDFH 477 (566)
Q Consensus 403 ~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~-----~~~~HP~HlHG~~F~ 477 (566)
.+. + +..++ |+... .......++.++.++.|++|||+|+|.... ....||||||||+||
T Consensus 389 ~~~---~----~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~ 452 (538)
T TIGR03390 389 ENG---L----PATPN--YTAAL-------ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFY 452 (538)
T ss_pred cCC---C----CcCCC--ccccc-------ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEE
Confidence 321 0 11111 11000 000112245678899999999999996411 247899999999999
Q ss_pred EEEeCCCCCCcccccccccCCCCCcceeEEeC----------CCcEEEEEEEecCceeEEEEeecccccccccEEEEEEe
Q 008422 478 VLAQGFGNFDAARDRQKFNLVNPQRRNTIAVP----------VGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 478 Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp----------~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
||++|.|.|++......+|+.||++|||+.|| ++||++|||++||||.|+|||||+||+.+||+++|.|.
T Consensus 453 vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~ 532 (538)
T TIGR03390 453 DIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFG 532 (538)
T ss_pred EEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeC
Confidence 99999999987544456889999999999996 78999999999999999999999999999999999986
Q ss_pred cC
Q 008422 548 NG 549 (566)
Q Consensus 548 ~~ 549 (566)
+-
T Consensus 533 ~~ 534 (538)
T TIGR03390 533 DA 534 (538)
T ss_pred Ch
Confidence 53
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.1e-76 Score=637.41 Aligned_cols=436 Identities=25% Similarity=0.400 Sum_probs=314.0
Q ss_pred eEEEEEEEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcC
Q 008422 25 IVEHTFHVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPI 104 (566)
Q Consensus 25 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i 104 (566)
.++|+|++++..+.++|+.+.+|+|||++|||+|++++||+|+|+|+|.++++++|||||+++.. .+||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF--QMDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc--cccCCCccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999875 4799999999999
Q ss_pred CCCCeeEEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHh---
Q 008422 105 TPGNSYTYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQA--- 180 (566)
Q Consensus 105 ~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~--- 180 (566)
+||++|+|+|++ .++||||||||...+.. ||+|+|||+++++++. .+|+|++|+|+||++....+++.....
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 89999999999987776 9999999998754433 478999999999998776555432210
Q ss_pred ------------------cCCC--------------------C--CCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEE
Q 008422 181 ------------------TGGG--------------------P--NISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYL 220 (566)
Q Consensus 181 ------------------~g~~--------------------~--~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~r 220 (566)
.|.. . .....+|+||+.- ...+.+.+++|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvR 271 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVR 271 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEE
Confidence 0100 0 0012378999832 134678999999999
Q ss_pred EEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcce
Q 008422 221 LRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTT 300 (566)
Q Consensus 221 lRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~ 300 (566)
|||||+|+.+.+.|+|+||+|+||++||.+++|+.++++.|+|||||||+|+++ ..|.|+|.+....... .+
T Consensus 272 LR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~~~-------~~ 343 (587)
T TIGR01480 272 LRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDRTG-------YA 343 (587)
T ss_pred EEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCCCc-------eE
Confidence 999999999999999999999999999999999999999999999999999987 4689999988765432 46
Q ss_pred EEEEEEcCCCCC-CCCCCCC--CCCCCCCc-cc---------ccc--c--c---------------c--ccCCCC-----
Q 008422 301 RGIVVYDGATTA-NPLMPVL--PAFNDNPT-AH---------RFY--S--N---------------L--TGLKGG----- 341 (566)
Q Consensus 301 ~ail~y~~~~~~-~~~~p~~--p~~~~~~~-~~---------~~~--~--~---------------l--~~l~~~----- 341 (566)
.++|++.+.... .+.++.. ....+... .. .+. . + + ......
T Consensus 344 ~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (587)
T TIGR01480 344 RGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEP 423 (587)
T ss_pred EEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCccccc
Confidence 788888654221 1111110 01101100 00 000 0 0 0 000000
Q ss_pred ---------CCCC---CCCC----CcceEEEEEeccccccC-----CCCC---ccccCCCCeeeEeeccccccCCCCcch
Q 008422 342 ---------PQWV---PVPL----QVDEHMFVTVGLGLDRC-----PANA---TCQGVNGQRNSASMNNHSFQPPTSLSL 397 (566)
Q Consensus 342 ---------~~~~---~~p~----~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~in~~~~~~p~~~~l 397 (566)
..+. ..|. ....+......+..... +... ..-.....++.|++||..|.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~~~wtiNG~~~~------- 496 (587)
T TIGR01480 424 LNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMERFAWSFDGEAFG------- 496 (587)
T ss_pred CCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCceeEEEECCccCC-------
Confidence 0000 0000 00000000000000000 0000 00000112344566554431
Q ss_pred hhhhhcccCCcccCCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEE
Q 008422 398 LQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFH 477 (566)
Q Consensus 398 l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~ 477 (566)
....+.++.|++|+|.|.|... +.||||||||.|+
T Consensus 497 ------------------------------------------~~~pl~v~~Gervri~l~N~t~---~~HpmHlHG~~f~ 531 (587)
T TIGR01480 497 ------------------------------------------LKTPLRFNYGERLRVVLVNDTM---MAHPIHLHGMWSE 531 (587)
T ss_pred ------------------------------------------CCCceEecCCCEEEEEEECCCC---CCcceeEcCceee
Confidence 1134568999999999999765 8999999999999
Q ss_pred EEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEe
Q 008422 478 VLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 478 Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
|+..+ |. .+++|||+.|+|++.+.++|.+||||.|+||||++.|++.|||..|+|.
T Consensus 532 v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 532 LEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 98542 21 1357899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4.7e-74 Score=613.00 Aligned_cols=427 Identities=19% Similarity=0.246 Sum_probs=295.5
Q ss_pred eEEEEEEEEEEEeccCc-eeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCc
Q 008422 25 IVEHTFHVKNLTIGRLC-RQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCP 103 (566)
Q Consensus 25 ~~~~~l~~~~~~~~~~g-~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~ 103 (566)
..+|+|++++...+++| ....+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 34699999999999985 4457999999999999999999999999999999999999999999876 69986 899
Q ss_pred CCCCCeeEEEEEeCCCCcceeEeecchhhc----c-cceeEEEEeCCCCCCCCCCC--CCcceeEEeceecccCHHHHHH
Q 008422 104 ITPGNSYTYKFRIVNQEGTLWWHAHFSMLR----A-TVHGALIIRPRSGHKYPFPK--PNKEVPIILGEWWNADIIDVAK 176 (566)
Q Consensus 104 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~----~-Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 176 (566)
|.||++++|+|++++++||||||+|.++.+ . ||+|+|||+++.+...+++. ..+|++++++||+++...++..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999955689999999986543 2 99999999988765444443 3468999999999866443321
Q ss_pred HHHh-cCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEE-cCCeEEEEEecCCCc-Cc
Q 008422 177 QAQA-TGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKI-ANHNFTVVAIDACYT-EP 253 (566)
Q Consensus 177 ~~~~-~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p 253 (566)
.... .......++.++|||+. .|.+.++ +++|||||||+|+.+.+.|++ +||+|+|||+||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~----------~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAI----------YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCcc----------cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 1110 01112467899999994 3566665 679999999999999999998 799999999999997 99
Q ss_pred EEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCC-CCCCCCCCCCCCCCcccccc
Q 008422 254 YVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTA-NPLMPVLPAFNDNPTAHRFY 332 (566)
Q Consensus 254 ~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~-~~~~p~~p~~~~~~~~~~~~ 332 (566)
+.+++|.|+|||||||+|+++ +.++|.+....................++++...... +..+|.
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~-------------- 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPD-------------- 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCCh--------------
Confidence 999999999999999999998 4678888876543221000001112345555432211 111111
Q ss_pred cccccCCCCCCCCCCCCCcceEEEEEecccc----c-----cCC--CCCccc------cC---------CC----Ce---
Q 008422 333 SNLTGLKGGPQWVPVPLQVDEHMFVTVGLGL----D-----RCP--ANATCQ------GV---------NG----QR--- 379 (566)
Q Consensus 333 ~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~----~-----~~~--~~~~~~------~~---------~~----~~--- 379 (566)
.+..+... +. ......+++.+.+.... . ... ....+. .. .+ ++
T Consensus 334 -~l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (523)
T PRK10965 334 -SLASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFD 409 (523)
T ss_pred -hhccCCCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 11111100 00 00001223322221000 0 000 000000 00 00 00
Q ss_pred --eeEeeccccccCCCCcchhhhhhcccCCcccCCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEE
Q 008422 380 --NSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQ 457 (566)
Q Consensus 380 --~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~ 457 (566)
..|+|||++|.. ....+.++.|+++.|.|.
T Consensus 410 ~~~~~~ING~~~~~------------------------------------------------~~~~~~~~~G~~e~w~i~ 441 (523)
T PRK10965 410 FHHANKINGKAFDM------------------------------------------------NKPMFAAKKGQYERWVIS 441 (523)
T ss_pred ccccccCCCeECCC------------------------------------------------CCcceecCCCCEEEEEEE
Confidence 012344443321 113356899999999999
Q ss_pred eCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe----cCceeEEEEeecc
Q 008422 458 NTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA----NNPGVWFMHCHLD 533 (566)
Q Consensus 458 n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a----dnpG~w~~HCHil 533 (566)
|.+. .+.|||||||++|+||++... ......+.|||||.|++ +.+.|++++ +++|.||||||||
T Consensus 442 N~~~--~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 442 GVGD--MMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred eCCC--CCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 9752 268999999999999998431 12223457999999988 555554443 5778999999999
Q ss_pred cccccccEEEEEE
Q 008422 534 VHLPWGLATAFVV 546 (566)
Q Consensus 534 ~H~~~GM~~~~~V 546 (566)
+|||.|||..|+|
T Consensus 510 ~Hed~GMM~~~~V 522 (523)
T PRK10965 510 EHEDTGMMLGFTV 522 (523)
T ss_pred hhhccCccceeEe
Confidence 9999999999997
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.9e-72 Score=594.48 Aligned_cols=403 Identities=15% Similarity=0.198 Sum_probs=290.5
Q ss_pred EEEEEEEEEEeccC-ceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCC
Q 008422 27 EHTFHVKNLTIGRL-CRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPIT 105 (566)
Q Consensus 27 ~~~l~~~~~~~~~~-g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~ 105 (566)
.++|+++......+ |..+.+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||++++.. ++||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 37999999998888 57889999999999999999999999999999999999999999999876 467764 6899
Q ss_pred CCCeeEEEEEeCCCCcceeEeecchhhcc-----cceeEEEEeCCCCCCCCCCC--CCcceeEEeceecccCHHHHHHHH
Q 008422 106 PGNSYTYKFRIVNQEGTLWWHAHFSMLRA-----TVHGALIIRPRSGHKYPFPK--PNKEVPIILGEWWNADIIDVAKQA 178 (566)
Q Consensus 106 PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-----Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 178 (566)
||++++|+|++.+++||||||+|.++.+. ||+|++||+++.+...+++. ..+|++|+++||.++........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998567999999999887442 99999999988765444443 23589999999998754322110
Q ss_pred HhcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEE-cCCeEEEEEecCCCc-CcEEe
Q 008422 179 QATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKI-ANHNFTVVAIDACYT-EPYVT 256 (566)
Q Consensus 179 ~~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~ 256 (566)
........++.++|||+. .|.++|++| +|||||||+|+.+.+.|+| +||+|+|||+||+++ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~----------~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQ----------SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCcc----------CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 111122467899999993 368899875 7999999999999999999 899999999998877 99999
Q ss_pred eEEEECCCceEEEEEeeCCCCceeEEEeeecccCC-C--CCCCCc---ceEEEEEEcCCCCCCCCCCCCCCCCCCCcccc
Q 008422 257 DVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAP-Q--IPFDNT---TTRGIVVYDGATTANPLMPVLPAFNDNPTAHR 330 (566)
Q Consensus 257 d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~-~--~~~~~~---~~~ail~y~~~~~~~~~~p~~p~~~~~~~~~~ 330 (566)
+++.|+|||||||+|++++ .+.+.+++....... . ..+... ....+++....... + +.. ..
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~------~~ 335 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL----P--LVT------DN 335 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccc----c--CCC------Cc
Confidence 9999999999999999974 456666653211000 0 000000 01123333221100 0 000 00
Q ss_pred cccccccCCCCCCCCCCCCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCccc
Q 008422 331 FYSNLTGLKGGPQWVPVPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFT 410 (566)
Q Consensus 331 ~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~ 410 (566)
....+.. .. ..+....++..+.+.. . .|.|||+.|....
T Consensus 336 ~p~~l~~---~~---~~~~~~~~~~~~~l~~----------------~--~~~INg~~~~~~~----------------- 374 (471)
T PRK10883 336 LPMRLLP---DE---IMEGSPIRSREISLGD----------------D--LPGINGALWDMNR----------------- 374 (471)
T ss_pred CChhhcC---CC---CCCCCCcceEEEEecC----------------C--cCccCCcccCCCc-----------------
Confidence 0011110 00 0111122333222211 1 2468887763211
Q ss_pred CCCCCCCCcccccCCCccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCccc
Q 008422 411 PDFPDNPPLIFDFTNTALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAAR 490 (566)
Q Consensus 411 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 490 (566)
..+.++.|++++|.+.|. +.|||||||+.|||++++..
T Consensus 375 -------------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~------ 412 (471)
T PRK10883 375 -------------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGA------ 412 (471)
T ss_pred -------------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCC------
Confidence 224578899999999874 58999999999999998432
Q ss_pred ccccccCCCCCcceeEEeCCCcEEEEEEEecCce----eEEEEeecccccccccEEEEEEec
Q 008422 491 DRQKFNLVNPQRRNTIAVPVGGWAVIRFRANNPG----VWFMHCHLDVHLPWGLATAFVVEN 548 (566)
Q Consensus 491 ~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG----~w~~HCHil~H~~~GM~~~~~V~~ 548 (566)
........|||||.|+ +.+.|+++++++| .||||||||+|||.|||..|+|.+
T Consensus 413 ---~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 413 ---MPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ---CCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 1111223699999996 4599999999887 899999999999999999999954
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.3e-58 Score=486.42 Aligned_cols=402 Identities=26% Similarity=0.374 Sum_probs=282.9
Q ss_pred ccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeC
Q 008422 38 GRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIV 117 (566)
Q Consensus 38 ~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~ 117 (566)
...+.....++|||++|||+|++++||+|+|+++|.+.+.|++||||+..+. .+||++..+|+++.||++++|.|+.
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~~~~y~f~~- 122 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPG--EMDGVPPLTQIPPGPGETPTYTFTQ- 122 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCc--cccCCCcccccCCCCCCcEEEeecC-
Confidence 3347788899999999999999999999999999998887999999988884 4799999999999999999999998
Q ss_pred CCCcceeEeecchhhcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHhcCCCCCCCceEEEcCC
Q 008422 118 NQEGTLWWHAHFSMLRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGR 196 (566)
Q Consensus 118 ~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~ 196 (566)
+.+||||||+|.++|.. ||+|++||++..+.+. ..|++..+++.+|........... .........+..+|||+
T Consensus 123 ~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCC
Confidence 77779999999999776 9999999999876544 467777777888876554333221 12223346778999997
Q ss_pred CCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCC
Q 008422 197 PGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQP 276 (566)
Q Consensus 197 ~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~ 276 (566)
. .+.+.++ +++|||||+|+++.+.+.+++.+++|+||++||.+++|..+|.+.|+|||||||++++. +
T Consensus 198 ~----------~p~~~~~-~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~-~ 265 (451)
T COG2132 198 I----------LPFKAVP-GGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMN-D 265 (451)
T ss_pred c----------cceeecC-CCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcC-C
Confidence 3 3444444 55699999999988888889999999999999999988999999999999999999998 4
Q ss_pred CceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCC-cceEE
Q 008422 277 VGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLKGGPQWVPVPLQ-VDEHM 355 (566)
Q Consensus 277 ~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~-~~~~~ 355 (566)
.+.+.+.+.. .+.. ....+......... +..+..+........ .................. ..+..
T Consensus 266 ~~~~~l~~~~-~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T COG2132 266 GGAVTLTALG-EDMP------DTLKGFRAPNPILT-----PSYPVLNGRVGAPTG-DMADHAPVGLLVTILVEPGPNRDT 332 (451)
T ss_pred CCeEEEEecc-ccCC------ceeeeeeccccccc-----cccccccccccCCCc-chhhccccccchhhcCCCcccccc
Confidence 6788888876 2111 01111111111000 000000000000000 000000000000000000 00000
Q ss_pred EEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCcccCCCCCCCCcccccCCCccCCCcccc
Q 008422 356 FVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNTALSNDSSLL 435 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 435 (566)
.+.+. .......|.+|++.|..
T Consensus 333 ~~~l~--------------~~~~~~~~~~n~~~~~~-------------------------------------------- 354 (451)
T COG2132 333 DFHLI--------------GGIGGYVWAINGKAFDD-------------------------------------------- 354 (451)
T ss_pred cchhh--------------cccccccccccCccCCC--------------------------------------------
Confidence 00000 00011223333322210
Q ss_pred CCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEE
Q 008422 436 FAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAV 515 (566)
Q Consensus 436 ~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~v 515 (566)
....+.++.|++++|++.|.+. +.|||||||+.|+|++.+ .......+.||||+.+.+++.++
T Consensus 355 ----~~~~~~~~~G~~~~~~i~n~~~---~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 355 ----NRVTLIAKAGTRERWVLTNDTP---MPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred ----CcCceeecCCCEEEEEEECCCC---CccCeEEcCceEEEEecC----------CCcccccCccceEEEeCCCeEEE
Confidence 1245678999999999999754 899999999999999985 11222566899999999999999
Q ss_pred EEEEecCceeEEEEeecccccccccEEEEEEe
Q 008422 516 IRFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 516 irf~adnpG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
++|.+++||.|+|||||++|++.|||..+.|.
T Consensus 418 v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 418 VRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred EEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 99999999999999999999999999999875
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=7.5e-48 Score=387.44 Aligned_cols=265 Identities=20% Similarity=0.269 Sum_probs=217.5
Q ss_pred cCCceEEEEEEEEEEEecc-CceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC--CceeEEEeCccccCCCCCCCCC
Q 008422 21 ASAAIVEHTFHVKNLTIGR-LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP--YNLTIHWHGIFQLLSAWADGPS 97 (566)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~--~~~~iH~HG~~~~~~~~~DG~~ 97 (566)
....+++|+|++++.++.. +|+.+.+|+|||++|||+|++++||+|+|+|+|.++ .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 3568899999999999885 599999999999999999999999999999999985 58999999963 369988
Q ss_pred CCCCCcCCCCCeeEEEEEeCCCCcceeEeecchh----hcc-cceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHH
Q 008422 98 MITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSM----LRA-TVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADII 172 (566)
Q Consensus 98 ~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~ 172 (566)
.++| |.||++++|+|++ +++||||||||.++ +.. ||+|+|||++++.. +..|+|++++++||++....
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 8877 9999999999998 89999999999765 333 99999999987532 25789999999999986532
Q ss_pred HHHHHHH--hcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCC
Q 008422 173 DVAKQAQ--ATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACY 250 (566)
Q Consensus 173 ~~~~~~~--~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~ 250 (566)
....... ........++.++||||.+++ .+.+++++|+++||||+|++....+.||++|+.+++|+.||.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~ 243 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKF 243 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcc
Confidence 2100000 000011356899999996542 2457899999999999999998888999999999999999999
Q ss_pred cCc-E-EeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCC
Q 008422 251 TEP-Y-VTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAT 310 (566)
Q Consensus 251 ~~p-~-~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~ 310 (566)
+.+ . .++++.|+||||+||+|+++ ++|.|+++++.+.... .....|+++|++..
T Consensus 244 ~~~~~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~-----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 244 ANPPNRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAF-----EKGAAAQVKVEGAW 299 (311)
T ss_pred cCCCCCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHH-----hCCCEEEEEECCCC
Confidence 955 3 48999999999999999999 5899999999876532 12478999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=4.7e-35 Score=251.63 Aligned_cols=116 Identities=41% Similarity=0.766 Sum_probs=107.6
Q ss_pred EEEEEEeccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCee
Q 008422 31 HVKNLTIGRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSY 110 (566)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~ 110 (566)
+|++..+.++|..+.+|+|||++|||+|++++||+|+|+|+|.++++++|||||+++....|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47888899998779999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCC
Q 008422 111 TYKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRS 146 (566)
Q Consensus 111 ~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~ 146 (566)
+|+|++++++||||||||.+++.. ||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 999999555999999999999644 999999999874
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=1.2e-29 Score=227.25 Aligned_cols=108 Identities=44% Similarity=0.794 Sum_probs=96.4
Q ss_pred CCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEE
Q 008422 437 APKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVI 516 (566)
Q Consensus 437 ~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~vi 516 (566)
...+..++.++.|++|+|+|+|.+. ..|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~---~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGS---MPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTT---SSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCC---CccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 4456788999999999999999765 7999999999999999987766544 45678889999999999999999999
Q ss_pred EEEecCceeEEEEeecccccccccEEEEEEec
Q 008422 517 RFRANNPGVWFMHCHLDVHLPWGLATAFVVEN 548 (566)
Q Consensus 517 rf~adnpG~w~~HCHil~H~~~GM~~~~~V~~ 548 (566)
||++||||.|+|||||++|++.|||++|.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=1.4e-26 Score=211.71 Aligned_cols=150 Identities=39% Similarity=0.646 Sum_probs=120.3
Q ss_pred cceeEEeceecccCHHHHHHHHHhcCC----CCCCCceEEEcCCCCCCCCCC-----CCCeeEEEEECCcEEEEEEEecc
Q 008422 157 KEVPIILGEWWNADIIDVAKQAQATGG----GPNISDAYTINGRPGDLYPCS-----QNQTYTLKVETGKTYLLRIINAA 227 (566)
Q Consensus 157 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~g~~~~~~-----~~~~~~~~v~~G~~~rlRliN~~ 227 (566)
.|++|+++||+++....+..+....+. .+..+++++|||+ + .+.|+ ....+.+.+++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-~-~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGK-G-RFDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTB-T-CBTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCc-c-ccccccccccccccceEEEcCCcEEEEEEEecc
Confidence 378999999999887777665444322 2678999999999 4 34554 24578999999999999999999
Q ss_pred cCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEc
Q 008422 228 LNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYD 307 (566)
Q Consensus 228 ~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~ 307 (566)
+...+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++++|+|+|++........ ......+.|||+|+
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~-~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSIN-DPQNGNALAILRYD 157 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSH-SHGGGTTEEEEEET
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCc-cCCCcEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999778999999963222111 12234589999998
Q ss_pred CC
Q 008422 308 GA 309 (566)
Q Consensus 308 ~~ 309 (566)
++
T Consensus 158 ~~ 159 (159)
T PF00394_consen 158 GA 159 (159)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.72 E-value=3.1e-16 Score=169.81 Aligned_cols=230 Identities=14% Similarity=0.162 Sum_probs=149.1
Q ss_pred EEECCCCCC--CeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEEeCCC
Q 008422 47 TAVNGSLPG--PTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFRIVNQ 119 (566)
Q Consensus 47 ~~~NG~~pG--P~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~~~~~ 119 (566)
+++||+.+. +++.+++|+++++||+|... ....++..|......+ .||.+ .+....|.|||+++..+++ .+
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 779999863 68999999999999999975 4578888888876555 59966 2445679999999999987 56
Q ss_pred CcceeEeecchhhcccceeEEEEe-CCCCCCCC-CCCC----CcceeE------------Eec-----ee----------
Q 008422 120 EGTLWWHAHFSMLRATVHGALIIR-PRSGHKYP-FPKP----NKEVPI------------ILG-----EW---------- 166 (566)
Q Consensus 120 ~Gt~wYH~H~~~~~~Gl~G~liV~-~~~~~~~~-~~~~----~~e~~l------------~~~-----d~---------- 166 (566)
.|.|+..+...+.. |...+.+.. .....+.| ++.. -.+... .+. +.
T Consensus 327 ~g~~~i~a~~~~~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDRT-GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCCC-ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 78999988765433 333323322 21111111 1100 000000 000 00
Q ss_pred ccc----------------------------------------CHHHHHHHHHhcC-------CCC----------C-CC
Q 008422 167 WNA----------------------------------------DIIDVAKQAQATG-------GGP----------N-IS 188 (566)
Q Consensus 167 ~~~----------------------------------------~~~~~~~~~~~~g-------~~~----------~-~~ 188 (566)
.+. .....+....... ..+ . ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 0000000000000 000 0 11
Q ss_pred ceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEE
Q 008422 189 DAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTD 268 (566)
Q Consensus 189 ~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~d 268 (566)
..|+|||+.+. ..+.++++.|++|||||+|.+.+ .+.+|+|||.|.+...||.+. ...|++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~~-~HpmHlHG~~f~v~~~~G~~~--~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTMM-AHPIHLHGMWSELEDGQGEFQ--VRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCCC-CcceeEcCceeeeecCCCccc--ccCCceeeCCCCEEE
Confidence 14899999642 34568899999999999998854 556999999999998888632 335899999999999
Q ss_pred EEEeeCCCCceeEEEeeecccC
Q 008422 269 VLLKADQPVGSYYMAARAYASA 290 (566)
Q Consensus 269 v~v~~~~~~G~y~~~~~~~~~~ 290 (566)
+.++++ ++|.|++|||.....
T Consensus 556 ~~f~ad-~pG~w~~HCH~l~H~ 576 (587)
T TIGR01480 556 FRVTAD-ALGRWAYHCHMLLHM 576 (587)
T ss_pred EEEECC-CCeEEEEcCCCHHHH
Confidence 999999 799999999986543
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.72 E-value=9.8e-17 Score=143.17 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=80.5
Q ss_pred ceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC---CceeEEEeCccccCCCCCCCCCCCCCCcCCCC---C-e--eE
Q 008422 41 CRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP---YNLTIHWHGIFQLLSAWADGPSMITQCPITPG---N-S--YT 111 (566)
Q Consensus 41 g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~---~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG---~-~--~~ 111 (566)
+....-+.++| .+||+|++++||+|+|+|+|.++ ..+.||+||......+-+||++.++||++.|+ + . .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 55666778888 66899999999999999999954 34667777765544444799999999998884 1 2 35
Q ss_pred EEEEeCCCCcceeEeecchhhcc-cceeEEEEe
Q 008422 112 YKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIR 143 (566)
Q Consensus 112 Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~ 143 (566)
+.|+. .++||||||||..++.. ||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 56666 68999999999988887 999999995
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.67 E-value=2.8e-14 Score=144.09 Aligned_cols=247 Identities=16% Similarity=0.146 Sum_probs=150.8
Q ss_pred CceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccC-ceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCce
Q 008422 188 SDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALN-NQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQT 266 (566)
Q Consensus 188 ~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR 266 (566)
.+.+++||+. ..|.+++++|+++++++.|.... ..+.+|+|++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 4578999993 45899999999999999998632 46778999874 4566421 223999999
Q ss_pred EEEEEeeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCC
Q 008422 267 TDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGATTANPLMPVLPAFNDNPTAHRFYSNLTGLKGGPQWVP 346 (566)
Q Consensus 267 ~dv~v~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~ 346 (566)
+.+.++++ .+|.||++||........... +..+.+.++.... .+ ..+ .++..-++....
T Consensus 108 ~ty~F~~~-~~Gty~YH~H~~~~~~~q~~~--Gl~G~liV~~~~~----~~---~~d-----~e~~l~l~d~~~------ 166 (311)
T TIGR02376 108 ATLRFKAT-RPGAFVYHCAPPGMVPWHVVS--GMNGAIMVLPREG----LP---EYD-----KEYYIGESDLYT------ 166 (311)
T ss_pred EEEEEEcC-CCEEEEEEcCCCCchhHHhhc--CcceEEEeeccCC----Cc---Ccc-----eeEEEeeeeEec------
Confidence 99999988 689999999964311100011 2333444443211 11 000 000000000000
Q ss_pred CCCCcceEEEEEeccccccCCCCCccccCCCCeeeEeeccccccCCCCcchhhhhhcccCCcccCCCCCCCCcccccCCC
Q 008422 347 VPLQVDEHMFVTVGLGLDRCPANATCQGVNGQRNSASMNNHSFQPPTSLSLLQAFFFNVGGIFTPDFPDNPPLIFDFTNT 426 (566)
Q Consensus 347 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~ 426 (566)
.+.......+. ..... +. ....-.+.+||+...
T Consensus 167 ~~~~~~~~~~~-~~~~~--------~~--~~~~~~~~iNG~~~~------------------------------------ 199 (311)
T TIGR02376 167 PKDEGEGGAYE-DDVAA--------MR--TLTPTHVVFNGAVGA------------------------------------ 199 (311)
T ss_pred ccccccccccc-chHHH--------Hh--cCCCCEEEECCccCC------------------------------------
Confidence 00000000000 00000 00 000012334443210
Q ss_pred ccCCCccccCCCCcceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCC--cce
Q 008422 427 ALSNDSSLLFAPKRTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQ--RRN 504 (566)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~--~rD 504 (566)
....+.++.|++++|.|.|.+. ...+.||++|++|.++....+. ..+. ..|
T Consensus 200 -------------~~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~DG~~------------~~~~~~~~~ 252 (311)
T TIGR02376 200 -------------LTGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVTGKF------------ANPPNRDVE 252 (311)
T ss_pred -------------CCCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEECCcc------------cCCCCCCcc
Confidence 0012357789999999999753 3568999999999999874221 2222 369
Q ss_pred eEEeCCCcEEEEEEEecCceeEEEEeeccccc-ccccEEEEEEec
Q 008422 505 TIAVPVGGWAVIRFRANNPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 505 Tv~vp~~g~~virf~adnpG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
++.|.||..+.|.++++.||.|++|||...|. ..|++++++|..
T Consensus 253 ~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 253 TWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred eEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 99999999999999999999999999999998 779999999864
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.54 E-value=4.9e-13 Score=143.95 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=146.0
Q ss_pred eEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeEEE-eCccccCCCCCCCCC-----CCCCCcCCCCCeeEEEEE
Q 008422 43 QQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-YNLTIHW-HGIFQLLSAWADGPS-----MITQCPITPGNSYTYKFR 115 (566)
Q Consensus 43 ~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~-~~~~iH~-HG~~~~~~~~~DG~~-----~vtq~~i~PG~~~~Y~f~ 115 (566)
...++++||+. .|.+.+. |.++|+|+.|... ....+.+ .|......+ .||.+ .+....|.|||+++..++
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvlv~ 287 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVLVD 287 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEEEE
Confidence 44678999996 5898885 6799999999974 5566776 454433333 49854 233466999999999999
Q ss_pred eCCCCcceeEeecchhhcccc--------eeEEEEeCCC--C-CCCC-----CCC-------CCcceeEEeceecccCHH
Q 008422 116 IVNQEGTLWWHAHFSMLRATV--------HGALIIRPRS--G-HKYP-----FPK-------PNKEVPIILGEWWNADII 172 (566)
Q Consensus 116 ~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~~~--~-~~~~-----~~~-------~~~e~~l~~~d~~~~~~~ 172 (566)
. .+.|.++...-..... |+ +-.+.+.... . ...| ++. ..+.+.+.+..+......
T Consensus 288 ~-~~~~~~~l~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 288 T-SDGKAFDLVTLPVSQM-GMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred c-CCCceEEEEEecccCc-ccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 7 5667777765422111 11 1122233111 1 0000 000 001222222111000000
Q ss_pred -----H----HHHH--------HH--------hcC----CC-CCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEE
Q 008422 173 -----D----VAKQ--------AQ--------ATG----GG-PNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLR 222 (566)
Q Consensus 173 -----~----~~~~--------~~--------~~g----~~-~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlR 222 (566)
. .... .. ..| .. ......++|||+.++ ...+.++++.|++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e~w~ 439 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYERWV 439 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEEEEE
Confidence 0 0000 00 000 00 000112489999642 13467889999999999
Q ss_pred EEecccCceEEEEEcCCeEEEEEecCCCcC---cEEeeEEEECCCceEEEEEeeCC---CCceeEEEeeecccCC
Q 008422 223 IINAALNNQLFFKIANHNFTVVAIDACYTE---PYVTDVVVIAPGQTTDVLLKADQ---PVGSYYMAARAYASAP 291 (566)
Q Consensus 223 liN~~~~~~~~~~l~gh~~~via~DG~~~~---p~~~d~~~l~pgeR~dv~v~~~~---~~G~y~~~~~~~~~~~ 291 (566)
|+|.+....|.|||||+.|+|++.||.+.. +.++||+.|.+ ++++|+++++. ++|.|++|||.+....
T Consensus 440 i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed 513 (523)
T PRK10965 440 ISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHED 513 (523)
T ss_pred EEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhc
Confidence 999996556779999999999999998774 35789999977 88999999973 4679999999987654
No 25
>PLN02835 oxidoreductase
Probab=99.50 E-value=3e-12 Score=138.38 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=149.4
Q ss_pred EEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCCC----CCCCcCCCCCeeEEEEEeCC
Q 008422 44 QTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPSM----ITQCPITPGNSYTYKFRIVN 118 (566)
Q Consensus 44 ~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----vtq~~i~PG~~~~Y~f~~~~ 118 (566)
...+++||+.. |++++++|+++++|+.|... ....+|..|....... .||.+- +....|.||||++..+++..
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 46789999975 89999999999999999975 4678899888876554 599752 33456999999999999865
Q ss_pred CCcceeEeecchhhcc--cceeEEEEeCCCC-CCCCCCC---CCc--c------eeEEeceecccCH---HHHHHHHH-h
Q 008422 119 QEGTLWWHAHFSMLRA--TVHGALIIRPRSG-HKYPFPK---PNK--E------VPIILGEWWNADI---IDVAKQAQ-A 180 (566)
Q Consensus 119 ~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~-~~~~~~~---~~~--e------~~l~~~d~~~~~~---~~~~~~~~-~ 180 (566)
.+|.||...-...... ...+.|-.+.... ...+++. .+. + ....+........ ........ .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 6899999863211111 2223333322211 0011110 000 0 0000000000000 00000000 0
Q ss_pred -----cCCCC--CCCceEEEcCCCCCCC---------------CCC-------C-----CCeeEEEEECCcEEEEEEEec
Q 008422 181 -----TGGGP--NISDAYTINGRPGDLY---------------PCS-------Q-----NQTYTLKVETGKTYLLRIINA 226 (566)
Q Consensus 181 -----~g~~~--~~~~~~liNG~~g~~~---------------~~~-------~-----~~~~~~~v~~G~~~rlRliN~ 226 (566)
..... .....|.+||.++... .|. . ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 00000 0013577888764210 010 0 012245677889999999998
Q ss_pred ccCceEEEEEcCCeEEEEEe-cCCC----------cCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccC
Q 008422 227 ALNNQLFFKIANHNFTVVAI-DACY----------TEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASA 290 (566)
Q Consensus 227 ~~~~~~~~~l~gh~~~via~-DG~~----------~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~ 290 (566)
+.. .+.||||||.|+|++. +|.+ ..|...||+.+.+++.+-|.+.++ +||.|.||||.....
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H~ 501 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWERQ 501 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhhh
Confidence 755 4559999999999987 5533 248899999999999999999999 899999999986543
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.49 E-value=7.3e-12 Score=136.41 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=148.1
Q ss_pred EEEEECCCC-C--------CCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCee
Q 008422 45 TITAVNGSL-P--------GPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSY 110 (566)
Q Consensus 45 ~~~~~NG~~-p--------GP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~ 110 (566)
..+++||+. + -++|++++|+++++||+|... ....+|.+|......+ .||.+ .+....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 578999974 1 158999999999999999964 4567888888766555 59975 2334679999999
Q ss_pred EEEEEeCCCCcceeEeecchhh-----cc-cceeEEEEeCCCCCCCCC----CCCCcc---------e-eEEeceecc--
Q 008422 111 TYKFRIVNQEGTLWWHAHFSML-----RA-TVHGALIIRPRSGHKYPF----PKPNKE---------V-PIILGEWWN-- 168 (566)
Q Consensus 111 ~Y~f~~~~~~Gt~wYH~H~~~~-----~~-Gl~G~liV~~~~~~~~~~----~~~~~e---------~-~l~~~d~~~-- 168 (566)
+..+++.+.+|.||.+.+.... .. .-.+.|..........+- +..+.. . .+....+..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999985558999999875311 11 122333332322111110 000000 0 000000000
Q ss_pred -cCHHH----HHHHHHhcCC-----C-CCCCceEEEcCCCCCC---------------------------CCC-CCC---
Q 008422 169 -ADIID----VAKQAQATGG-----G-PNISDAYTINGRPGDL---------------------------YPC-SQN--- 206 (566)
Q Consensus 169 -~~~~~----~~~~~~~~g~-----~-~~~~~~~liNG~~g~~---------------------------~~~-~~~--- 206 (566)
..... .+........ . ....-.+.|||+.... ..| ++.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000000 0 0001135677764210 001 000
Q ss_pred -------CeeEEEEECCcEEEEEEEeccc--CceEEEEEcCCeEEEEEec-CCC-----------cCcEEeeEEEECCCc
Q 008422 207 -------QTYTLKVETGKTYLLRIINAAL--NNQLFFKIANHNFTVVAID-ACY-----------TEPYVTDVVVIAPGQ 265 (566)
Q Consensus 207 -------~~~~~~v~~G~~~rlRliN~~~--~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~~~l~pge 265 (566)
....+.++.|+++++.|.|.+. ...|.||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788899999999999853 2357799999999999886 322 147788999999999
Q ss_pred eEEEEEeeCCCCceeEEEeeecccCC
Q 008422 266 TTDVLLKADQPVGSYYMAARAYASAP 291 (566)
Q Consensus 266 R~dv~v~~~~~~G~y~~~~~~~~~~~ 291 (566)
-+-|.++++ +||.|.+|||..-...
T Consensus 486 ~vvirf~ad-NPG~W~~HCHi~~H~~ 510 (539)
T TIGR03389 486 WAAIRFVAD-NPGVWFMHCHLEVHTT 510 (539)
T ss_pred eEEEEEecC-CCeEEEEEecccchhh
Confidence 999999999 8999999999866543
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.44 E-value=5.1e-12 Score=134.83 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=138.7
Q ss_pred ceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeEEE-eCccccCCCCCCCCC-----CCCCCcCCCCCeeEEE
Q 008422 41 CRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSP-YNLTIHW-HGIFQLLSAWADGPS-----MITQCPITPGNSYTYK 113 (566)
Q Consensus 41 g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~-~~~~iH~-HG~~~~~~~~~DG~~-----~vtq~~i~PG~~~~Y~ 113 (566)
|....++++||+. .|.|.|+.| ++|+|+.|... ....+++ .|......+ .||.+ .+++..|.|||+++..
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEE
Confidence 3446779999986 599999875 89999999975 5668888 565443333 48643 2345679999999999
Q ss_pred EEeCCCCcceeEeecch-hhccccee------------EEEEeCCCC---CCCCCCCCCcceeEEeceecccCHHHHHHH
Q 008422 114 FRIVNQEGTLWWHAHFS-MLRATVHG------------ALIIRPRSG---HKYPFPKPNKEVPIILGEWWNADIIDVAKQ 177 (566)
Q Consensus 114 f~~~~~~Gt~wYH~H~~-~~~~Gl~G------------~liV~~~~~---~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 177 (566)
.++ .+.+.+.+++-.. +....+.+ .+-+++... ...+++.......+ ........ ..
T Consensus 283 Vd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~-----~~~~~~~~-~~ 355 (471)
T PRK10883 283 VDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDEI-----MEGSPIRS-RE 355 (471)
T ss_pred EEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCCC-----CCCCCcce-EE
Confidence 997 6666777766321 11111111 111222110 00001110000000 00000000 00
Q ss_pred HHhcCCCCCCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCc---E
Q 008422 178 AQATGGGPNISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEP---Y 254 (566)
Q Consensus 178 ~~~~g~~~~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p---~ 254 (566)
.... .+.++|||+.++ ...+.++++.|++++|+|.|.. .|.||||||.|+|++.||....| .
T Consensus 356 ~~l~------~~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 356 ISLG------DDLPGINGALWD------MNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred EEec------CCcCccCCcccC------CCcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccC
Confidence 0000 113469999642 1334578999999999998863 46799999999999999986543 4
Q ss_pred EeeEEEECCCceEEEEEeeCCCCc---eeEEEeeecccCC
Q 008422 255 VTDVVVIAPGQTTDVLLKADQPVG---SYYMAARAYASAP 291 (566)
Q Consensus 255 ~~d~~~l~pgeR~dv~v~~~~~~G---~y~~~~~~~~~~~ 291 (566)
+.|||.|. ++++|++++++..| .|++|||.++...
T Consensus 421 wkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD 458 (471)
T PRK10883 421 WKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMAD 458 (471)
T ss_pred cCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccc
Confidence 57999994 57999999995433 7999999987655
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.44 E-value=1.4e-12 Score=112.32 Aligned_cols=98 Identities=24% Similarity=0.206 Sum_probs=79.1
Q ss_pred ccCCceEEEEEEEE--EEEe---ccCceeEEEE-EECCCCCCCeEEEecCCEEEEEEEeCCCCce--eEEEeCccccCCC
Q 008422 20 LASAAIVEHTFHVK--NLTI---GRLCRQQTIT-AVNGSLPGPTIRVHEGDTLIVHVFNKSPYNL--TIHWHGIFQLLSA 91 (566)
Q Consensus 20 ~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~--~iH~HG~~~~~~~ 91 (566)
.+.+..|+|+++|+ ++.+ +..|+....+ ++|+++..+.|+|++||+|+++|.|..+.++ +++++|.
T Consensus 19 ~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi------ 92 (135)
T TIGR03096 19 TAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI------ 92 (135)
T ss_pred chhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc------
Confidence 35678899999999 6665 3458887777 9999999899999999999999999876544 3333332
Q ss_pred CCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhc
Q 008422 92 WADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLR 133 (566)
Q Consensus 92 ~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~ 133 (566)
+..|.||++.+|+|++ .++|+|||||..+...
T Consensus 93 ---------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 93 ---------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred ---------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 1358999999999998 9999999999887644
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=4.4e-11 Score=128.05 Aligned_cols=237 Identities=21% Similarity=0.221 Sum_probs=150.9
Q ss_pred ceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCC-CCceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEE
Q 008422 41 CRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKS-PYNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFR 115 (566)
Q Consensus 41 g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~ 115 (566)
|.......+||+.. |.+.+ +|..+++||.|.. .....+++.|....... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~~-p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-PFKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-ceeec-CCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 55667778888553 45544 5555999999998 67778888877766555 48876 566788999999999998
Q ss_pred eCCCCcceeEeecchhhcccceeEEEEeCCCCCCCC-------CCCCC---cceeEEeceecccCHHHHHHHHHhcCCCC
Q 008422 116 IVNQEGTLWWHAHFSMLRATVHGALIIRPRSGHKYP-------FPKPN---KEVPIILGEWWNADIIDVAKQAQATGGGP 185 (566)
Q Consensus 116 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~-------~~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 185 (566)
. ...|++-+.+.......-+.+..-.........+ ....+ ......................... ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 6688999998872211112222211111100000 00011 1111111111111100000000000 00
Q ss_pred CCCceEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCc--CcEEeeEEEECC
Q 008422 186 NISDAYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYT--EPYVTDVVVIAP 263 (566)
Q Consensus 186 ~~~~~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~p~~~d~~~l~p 263 (566)
.....+.+||+..+ .....+.++.|+++||+|.|-+. ..+.||+||+.|.|++.|.... .+..+|++.+.|
T Consensus 340 ~~~~~~~~n~~~~~------~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFD------DNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCC------CCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 12245788888542 13567889999999999999997 5566999999999999992222 457899999999
Q ss_pred CceEEEEEeeCCCCceeEEEeeecccCC
Q 008422 264 GQTTDVLLKADQPVGSYYMAARAYASAP 291 (566)
Q Consensus 264 geR~dv~v~~~~~~G~y~~~~~~~~~~~ 291 (566)
++++.+.++++ .+|.|+++||......
T Consensus 413 ~~~~~v~~~a~-~~g~~~~HCH~l~H~~ 439 (451)
T COG2132 413 GERLLVRFDAD-YPGPWMFHCHILEHED 439 (451)
T ss_pred CeEEEEEEeCC-CCCceEEeccchhHhh
Confidence 99999999999 7889999999976554
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.26 E-value=1.1e-09 Score=119.50 Aligned_cols=233 Identities=16% Similarity=0.167 Sum_probs=137.8
Q ss_pred eEEEecCCEEEEEEEeCC-CCceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEEeCCCC-cceeEeecch
Q 008422 57 TIRVHEGDTLIVHVFNKS-PYNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFRIVNQE-GTLWWHAHFS 130 (566)
Q Consensus 57 ~i~~~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~~~~~~-Gt~wYH~H~~ 130 (566)
+|.|++|+++++||+|.. .....+++.|......+ .||.+ .+....|.||||++..+++...+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999986 45667788777765554 59965 23346699999999999984333 5899987654
Q ss_pred hhcc--cceeEEEEeCCCCC-CCC---C---CCCCcc-----eeE-Eecee-cccCHHHHHHHH--HhcCCCCCCCceEE
Q 008422 131 MLRA--TVHGALIIRPRSGH-KYP---F---PKPNKE-----VPI-ILGEW-WNADIIDVAKQA--QATGGGPNISDAYT 192 (566)
Q Consensus 131 ~~~~--Gl~G~liV~~~~~~-~~~---~---~~~~~e-----~~l-~~~d~-~~~~~~~~~~~~--~~~g~~~~~~~~~l 192 (566)
+... ....+++.+..... ..+ . +..+.. ..+ .+... ............ ...+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 4311 11224444432111 000 0 000000 000 00000 000000000000 00000000112366
Q ss_pred EcCCCCCC-------------------------CCCC-------C-----CCeeEEEEECCcEEEEEEEeccc-----Cc
Q 008422 193 INGRPGDL-------------------------YPCS-------Q-----NQTYTLKVETGKTYLLRIINAAL-----NN 230 (566)
Q Consensus 193 iNG~~g~~-------------------------~~~~-------~-----~~~~~~~v~~G~~~rlRliN~~~-----~~ 230 (566)
+||.+... +.|. . ...-.+.++.|++|.+.|.|.+. ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 77764320 0000 0 01124678899999999999752 33
Q ss_pred eEEEEEcCCeEEEEEec-CCC-----------cCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccCC
Q 008422 231 QLFFKIANHNFTVVAID-ACY-----------TEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAP 291 (566)
Q Consensus 231 ~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~ 291 (566)
.|.||||||.|+|++.. |.+ ..|...||+.+.++.-+-|.+.++ +||.|.+|||......
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~H~~ 514 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEPHLH 514 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchhhhh
Confidence 57799999999999987 433 147788999999999999999999 8999999999865543
No 31
>PLN02991 oxidoreductase
Probab=99.24 E-value=3.1e-09 Score=114.66 Aligned_cols=241 Identities=12% Similarity=0.103 Sum_probs=143.9
Q ss_pred EEEEEECCCCCCCeEEEecCCEEEEEEEeCCCC-ceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEEeCC
Q 008422 44 QTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPY-NLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFRIVN 118 (566)
Q Consensus 44 ~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~-~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~~~~ 118 (566)
...+++||+...+++.+++|+++++|++|.... ...++..|......+ .||.+ .+.+..|.||||++...++..
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 468899999766899999999999999999754 567888787765554 59965 234567999999999999866
Q ss_pred CCcceeEeecchhhccccee-EEEEeCCCCCC--CCCCC--CCcceeEEec---eeccc-----C--HH--HH----HHH
Q 008422 119 QEGTLWWHAHFSMLRATVHG-ALIIRPRSGHK--YPFPK--PNKEVPIILG---EWWNA-----D--II--DV----AKQ 177 (566)
Q Consensus 119 ~~Gt~wYH~H~~~~~~Gl~G-~liV~~~~~~~--~~~~~--~~~e~~l~~~---d~~~~-----~--~~--~~----~~~ 177 (566)
..|.||.-.-.......+.+ +++-++..... .+.+. .+.+...-.. ++... . .. .. ...
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 68889976543111111111 23333222110 01110 0000000000 00000 0 00 00 000
Q ss_pred HH-hcCCCC--CCCceEEEcCCCCCC----------CCCCC-----------------CCeeEEEEECCcEEEEEEEecc
Q 008422 178 AQ-ATGGGP--NISDAYTINGRPGDL----------YPCSQ-----------------NQTYTLKVETGKTYLLRIINAA 227 (566)
Q Consensus 178 ~~-~~g~~~--~~~~~~liNG~~g~~----------~~~~~-----------------~~~~~~~v~~G~~~rlRliN~~ 227 (566)
.. ...... ...-.+.|||.+... +..++ ...-.+.++.|+.|.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 000000 001246778775420 00000 0112356677888888777765
Q ss_pred cCceEEEEEcCCeEEEEEecC-----------CCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeec
Q 008422 228 LNNQLFFKIANHNFTVVAIDA-----------CYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 287 (566)
Q Consensus 228 ~~~~~~~~l~gh~~~via~DG-----------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~ 287 (566)
.. .+.||||||.|+|++... ++..|...|++.|.++.=+-|.++++ +||.|.+|||..
T Consensus 429 ~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi~ 497 (543)
T PLN02991 429 DI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSELW 497 (543)
T ss_pred CC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCcc
Confidence 44 566999999999997531 12368889999999999999999999 899999999984
No 32
>PLN02792 oxidoreductase
Probab=99.23 E-value=3.7e-09 Score=114.19 Aligned_cols=244 Identities=17% Similarity=0.141 Sum_probs=146.4
Q ss_pred eEEEEEECCCCC--CCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEE
Q 008422 43 QQTITAVNGSLP--GPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFR 115 (566)
Q Consensus 43 ~~~~~~~NG~~p--GP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~ 115 (566)
....+++||+-. .++|.+++|+++++||.|... ....++..|....... .||.+ .++...|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 346789999842 479999999999999999974 4567888887765554 59964 233466999999999999
Q ss_pred eCCCCcceeEeecchhhcccce-eEEEEeCCCCCCC---C-CCCC-CcceeEEe---ceeccc------CH---HHH--H
Q 008422 116 IVNQEGTLWWHAHFSMLRATVH-GALIIRPRSGHKY---P-FPKP-NKEVPIIL---GEWWNA------DI---IDV--A 175 (566)
Q Consensus 116 ~~~~~Gt~wYH~H~~~~~~Gl~-G~liV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~------~~---~~~--~ 175 (566)
+...+|.||...........+. -+++-+....... + .+.. +.....-. .++... .. ... .
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 8555799998876421111111 2333333221110 0 0000 00000000 000000 00 000 0
Q ss_pred --HHHH-hcCCCC--CCCceEEEcCCCCCC----------CC---C-C----C----------CCeeEEEEECCcEEEEE
Q 008422 176 --KQAQ-ATGGGP--NISDAYTINGRPGDL----------YP---C-S----Q----------NQTYTLKVETGKTYLLR 222 (566)
Q Consensus 176 --~~~~-~~g~~~--~~~~~~liNG~~g~~----------~~---~-~----~----------~~~~~~~v~~G~~~rlR 222 (566)
.... ...... ...-.+.+||.+... +. . + . ...-.+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0000 000000 001245678775420 00 0 0 0 01334678889999998
Q ss_pred EEecccCceEEEEEcCCeEEEEEec-C----------CCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeeccc
Q 008422 223 IINAALNNQLFFKIANHNFTVVAID-A----------CYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 289 (566)
Q Consensus 223 liN~~~~~~~~~~l~gh~~~via~D-G----------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~ 289 (566)
|-|.... .+.||||||.|+|++.- | ++..|...||+.+.++.=+-|.+.++ +||.|.||||....
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~~~h 492 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQFWAR 492 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcchhc
Confidence 8886544 45699999999999742 1 23368899999999999999999999 89999999986544
No 33
>PLN02604 oxidoreductase
Probab=99.23 E-value=9.8e-10 Score=120.20 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=137.1
Q ss_pred CeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEEeCCCCc-ceeEeecc
Q 008422 56 PTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFRIVNQEG-TLWWHAHF 129 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~~~~~~G-t~wYH~H~ 129 (566)
++|.+++|+++++||+|... ....++.-|......+ .||.+ .+....|.||||++..+++...+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 58999999999999999964 4666777776665554 59965 334567999999999999844444 79998653
Q ss_pred hhhc-ccce-eEEEEeCCCC--CCCCCCCC----CcceeEEeceecc---------cCHHHHHHH--HHhcCCCCCCCce
Q 008422 130 SMLR-ATVH-GALIIRPRSG--HKYPFPKP----NKEVPIILGEWWN---------ADIIDVAKQ--AQATGGGPNISDA 190 (566)
Q Consensus 130 ~~~~-~Gl~-G~liV~~~~~--~~~~~~~~----~~e~~l~~~d~~~---------~~~~~~~~~--~~~~g~~~~~~~~ 190 (566)
.... .-.. .+++.+.... ...+.... ..+....+..... ......... ...........-.
T Consensus 303 ~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 382 (566)
T PLN02604 303 VSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRR 382 (566)
T ss_pred ccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeEE
Confidence 3221 1111 2333333211 10000000 0000000000000 000000000 0000000001125
Q ss_pred EEEcCCCCCCC---------------CCC-----------------------CCCeeEEEEECCcEEEEEEEeccc----
Q 008422 191 YTINGRPGDLY---------------PCS-----------------------QNQTYTLKVETGKTYLLRIINAAL---- 228 (566)
Q Consensus 191 ~liNG~~g~~~---------------~~~-----------------------~~~~~~~~v~~G~~~rlRliN~~~---- 228 (566)
|.|||...... .|. ....-.+.++.|++|.+.|.|...
T Consensus 383 w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (566)
T PLN02604 383 WSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNAN 462 (566)
T ss_pred EEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCC
Confidence 67777643210 000 001124788899999999999853
Q ss_pred -CceEEEEEcCCeEEEEEec-CCC-----------cCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecccC
Q 008422 229 -NNQLFFKIANHNFTVVAID-ACY-----------TEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASA 290 (566)
Q Consensus 229 -~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~ 290 (566)
...|.||||||.|+|++.. |.+ ..|...||+.+.++.-+-|.++++ +||.|.||||.....
T Consensus 463 ~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~~Hl 536 (566)
T PLN02604 463 NSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIESHF 536 (566)
T ss_pred CCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecchhHh
Confidence 3457799999999999987 432 147788999999999999999998 899999999986554
No 34
>PLN02354 copper ion binding / oxidoreductase
Probab=99.22 E-value=2.8e-09 Score=115.64 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=145.2
Q ss_pred EEEEECCCCC------CCeEEEecCCEEEEEEEeCCC-CceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEE
Q 008422 45 TITAVNGSLP------GPTIRVHEGDTLIVHVFNKSP-YNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYK 113 (566)
Q Consensus 45 ~~~~~NG~~p------GP~i~~~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~ 113 (566)
..+++||+.. -|+|++++|++.++||.|... ....+|..|....... .||++ .+....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 279999999999999999974 5567888887766554 59975 2334669999999999
Q ss_pred EEeCCCCcceeEeecchhhcc--cceeEEEEeCCCCCC-CCCCCCCcce--eE-Eeceecc-------cC---HH-HH--
Q 008422 114 FRIVNQEGTLWWHAHFSMLRA--TVHGALIIRPRSGHK-YPFPKPNKEV--PI-ILGEWWN-------AD---II-DV-- 174 (566)
Q Consensus 114 f~~~~~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~~-~~~~~~~~e~--~l-~~~d~~~-------~~---~~-~~-- 174 (566)
+++...+|.||.......... ...|.|......... ...+...... .. ...+... .. .. ..
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 998556899999887422111 223333332221100 0011000000 00 0000000 00 00 00
Q ss_pred H--HHH--HhcCC-CCCCCceEEEcCCCCCCC----------CCC-C-------------------CCeeEEEEECCcEE
Q 008422 175 A--KQA--QATGG-GPNISDAYTINGRPGDLY----------PCS-Q-------------------NQTYTLKVETGKTY 219 (566)
Q Consensus 175 ~--~~~--~~~g~-~~~~~~~~liNG~~g~~~----------~~~-~-------------------~~~~~~~v~~G~~~ 219 (566)
. ... ..... .......+.|||...... ... + ...-.+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 00000 000012467787653200 000 0 01124567788999
Q ss_pred EEEEEecccCceEEEEEcCCeEEEEEecC-----------CCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeec
Q 008422 220 LLRIINAALNNQLFFKIANHNFTVVAIDA-----------CYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 287 (566)
Q Consensus 220 rlRliN~~~~~~~~~~l~gh~~~via~DG-----------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~ 287 (566)
.+-|.|.... .|.||||||.|+|++.-- ++..|...|++.|.++.=.-|.++++ +||.|.||||..
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPGvW~~HCHi~ 505 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD-NAGMWNIRSENW 505 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec-CCeEEeeecccc
Confidence 9988887644 556999999999997642 12358899999999999999999998 899999999984
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.20 E-value=1.9e-09 Score=117.18 Aligned_cols=245 Identities=16% Similarity=0.162 Sum_probs=143.5
Q ss_pred EEEEECCCC---------------CCCeEEEecCCEEEEEEEeCCCC-ceeEEEeCcc-ccCCCCCCCCC----CCCCCc
Q 008422 45 TITAVNGSL---------------PGPTIRVHEGDTLIVHVFNKSPY-NLTIHWHGIF-QLLSAWADGPS----MITQCP 103 (566)
Q Consensus 45 ~~~~~NG~~---------------pGP~i~~~~Gd~v~v~v~N~l~~-~~~iH~HG~~-~~~~~~~DG~~----~vtq~~ 103 (566)
..+++||+. ..|+|++++|+++++|+.|.... ...+++.|.. ....+ .||.+ .+....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 467899983 12789999999999999999754 4678887766 54444 59975 223456
Q ss_pred CCCCCeeEEEEEeCCC-------CcceeEeecchhhcc--cceeEEEEeCCCCCCCC-CCC-----C------CcceeEE
Q 008422 104 ITPGNSYTYKFRIVNQ-------EGTLWWHAHFSMLRA--TVHGALIIRPRSGHKYP-FPK-----P------NKEVPII 162 (566)
Q Consensus 104 i~PG~~~~Y~f~~~~~-------~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~~~~-~~~-----~------~~e~~l~ 162 (566)
|.||||++..+++.+. +|-||...-...... ...+.|..........+ .+. . ..+.-+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999998432 488998764322111 12333333212111111 000 0 0111110
Q ss_pred -eceec---ccCHHHHHHH-HHhcCCC--C-CCCceEEEcCCCCCCC-CC--------------------------CCCC
Q 008422 163 -LGEWW---NADIIDVAKQ-AQATGGG--P-NISDAYTINGRPGDLY-PC--------------------------SQNQ 207 (566)
Q Consensus 163 -~~d~~---~~~~~~~~~~-~~~~g~~--~-~~~~~~liNG~~g~~~-~~--------------------------~~~~ 207 (566)
+..-. .......... ....+.. . .....+++||.....- .. ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 10000 0000000000 0000000 0 1123577888754310 00 0001
Q ss_pred eeEEEEECCcEEEEEEEecc-------cCceEEEEEcCCeEEEEEe-cCCC-----------cCcEEeeEEEEC------
Q 008422 208 TYTLKVETGKTYLLRIINAA-------LNNQLFFKIANHNFTVVAI-DACY-----------TEPYVTDVVVIA------ 262 (566)
Q Consensus 208 ~~~~~v~~G~~~rlRliN~~-------~~~~~~~~l~gh~~~via~-DG~~-----------~~p~~~d~~~l~------ 262 (566)
.-.+.++.|+++++.|.|.. ....+.||||||.|+|++. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12467888999999999975 2356779999999999985 4543 258889999994
Q ss_pred ----CCceEEEEEeeCCCCceeEEEeeecccCC
Q 008422 263 ----PGQTTDVLLKADQPVGSYYMAARAYASAP 291 (566)
Q Consensus 263 ----pgeR~dv~v~~~~~~G~y~~~~~~~~~~~ 291 (566)
++.-+.|.+.++ +||.|.||||......
T Consensus 491 ~~~~~~~~~~ir~~~d-NPG~W~~HCHi~~H~~ 522 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVT-NPGVWMMHCHILQHMV 522 (538)
T ss_pred cccCCCceEEEEEEcC-CCeeEEEeccchhhhh
Confidence 777788888888 8999999999865543
No 36
>PLN02168 copper ion binding / pectinesterase
Probab=99.19 E-value=2.2e-09 Score=116.01 Aligned_cols=240 Identities=18% Similarity=0.171 Sum_probs=144.7
Q ss_pred EEEEEECCCCC-CCeEEEecCCEEEEEEEeCCCC-ceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEEeC
Q 008422 44 QTITAVNGSLP-GPTIRVHEGDTLIVHVFNKSPY-NLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFRIV 117 (566)
Q Consensus 44 ~~~~~~NG~~p-GP~i~~~~Gd~v~v~v~N~l~~-~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~~~ 117 (566)
...+++||+.+ .|+|++++|+++++|+.|.... ...++..|......+ .||.+ .+.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35789999853 4899999999999999999644 567888787766554 59964 23456799999999999985
Q ss_pred CCC-c---ceeEeecchhhcccc-eeEEEEeCCCCC--CCCCC---CC-Cc----ceeEEec-eec-----ccCHH-H-H
Q 008422 118 NQE-G---TLWWHAHFSMLRATV-HGALIIRPRSGH--KYPFP---KP-NK----EVPIILG-EWW-----NADII-D-V 174 (566)
Q Consensus 118 ~~~-G---t~wYH~H~~~~~~Gl-~G~liV~~~~~~--~~~~~---~~-~~----e~~l~~~-d~~-----~~~~~-~-~ 174 (566)
++. | .||...-.......+ ..+++.++.... ..|.+ .. +. +....+. ... ..... . .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 333 4 899887652111111 123444433211 01111 00 00 0000000 000 00000 0 0
Q ss_pred ----HHHHH-hcCCC--CCCCceEEEcCCCCCC----------CC----C-CC--C----------CeeEEEEECCcEEE
Q 008422 175 ----AKQAQ-ATGGG--PNISDAYTINGRPGDL----------YP----C-SQ--N----------QTYTLKVETGKTYL 220 (566)
Q Consensus 175 ----~~~~~-~~g~~--~~~~~~~liNG~~g~~----------~~----~-~~--~----------~~~~~~v~~G~~~r 220 (566)
..... ..... ......+.+||.+... +. . .+ . ..-.+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001256788876421 00 0 00 0 12346788899998
Q ss_pred EEEEecccCceEEEEEcCCeEEEEEe-----cC------CCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeee
Q 008422 221 LRIINAALNNQLFFKIANHNFTVVAI-----DA------CYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 286 (566)
Q Consensus 221 lRliN~~~~~~~~~~l~gh~~~via~-----DG------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~ 286 (566)
+=|-|.... .+.||||||.|+|++. |+ ++..|...|++.+.++.=+-|.++++ +||.|.||||.
T Consensus 427 iViqn~~~~-~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLFS-LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQK 501 (545)
T ss_pred EEEeCCCCC-CCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecC
Confidence 888887543 5669999999999976 11 23478899999999999999999999 89999999996
No 37
>PLN02191 L-ascorbate oxidase
Probab=98.99 E-value=3e-08 Score=108.49 Aligned_cols=239 Identities=14% Similarity=0.132 Sum_probs=137.1
Q ss_pred ECCCCCCCeEEEecCCEEEEEEEeCC-CCceeEEEeCccccCCCCCCCCCC----CCCCcCCCCCeeEEEEEeCCCC-cc
Q 008422 49 VNGSLPGPTIRVHEGDTLIVHVFNKS-PYNLTIHWHGIFQLLSAWADGPSM----ITQCPITPGNSYTYKFRIVNQE-GT 122 (566)
Q Consensus 49 ~NG~~pGP~i~~~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----vtq~~i~PG~~~~Y~f~~~~~~-Gt 122 (566)
+||+.-.++|.+++|++.++|++|.. .....+++.|......+ .||.+- +....|.||||++..+++...+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 34433223799999999999999996 44566777777765555 599762 3346699999999999985444 58
Q ss_pred eeEeecchhhc----ccceeEEEEe-CCCCCCCCC------CCCCc-----ceeE-Eeceec-ccCHHHHHHHH--HhcC
Q 008422 123 LWWHAHFSMLR----ATVHGALIIR-PRSGHKYPF------PKPNK-----EVPI-ILGEWW-NADIIDVAKQA--QATG 182 (566)
Q Consensus 123 ~wYH~H~~~~~----~Gl~G~liV~-~~~~~~~~~------~~~~~-----e~~l-~~~d~~-~~~~~~~~~~~--~~~g 182 (566)
||-..-..... .++ +++-. .......+. +..+. .... .+.... ........... ....
T Consensus 298 y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred EEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 99887443211 132 33333 222110000 00000 0000 000000 00000000000 0000
Q ss_pred CCCCCCceEEEcCCCCCCCC------------------------------CC-------CCCeeEEEEECCcEEEEEEEe
Q 008422 183 GGPNISDAYTINGRPGDLYP------------------------------CS-------QNQTYTLKVETGKTYLLRIIN 225 (566)
Q Consensus 183 ~~~~~~~~~liNG~~g~~~~------------------------------~~-------~~~~~~~~v~~G~~~rlRliN 225 (566)
........+.+||.+..... |. ....-.+.++.|+++.+=|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 00001124667776431000 00 001124567779999998888
Q ss_pred cc-----cCceEEEEEcCCeEEEEEecCC------------CcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 226 AA-----LNNQLFFKIANHNFTVVAIDAC------------YTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 226 ~~-----~~~~~~~~l~gh~~~via~DG~------------~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
.. ....|.||+|||+|+|++..-. +..|...|++.+.++.=+-|.++++ +||.|.+|||...
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~~ 534 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIEP 534 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCchh
Confidence 75 2446779999999999975432 1257789999999999999999998 8999999999865
Q ss_pred cCC
Q 008422 289 SAP 291 (566)
Q Consensus 289 ~~~ 291 (566)
...
T Consensus 535 Hl~ 537 (574)
T PLN02191 535 HLH 537 (574)
T ss_pred hhh
Confidence 543
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.93 E-value=6.4e-09 Score=92.78 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=73.9
Q ss_pred CeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCc-----------CcEEeeEEEECCCceEEEEEeeCC
Q 008422 207 QTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYT-----------EPYVTDVVVIAPGQTTDVLLKADQ 275 (566)
Q Consensus 207 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-----------~p~~~d~~~l~pgeR~dv~v~~~~ 275 (566)
....+.++.|++++|+|+|.+.. .+.||+|||.|+|++.++... .|..+|++.|.+++++.+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 55789999999999999998866 566999999999999999873 67899999999999999999998
Q ss_pred CCceeEEEeeecccC
Q 008422 276 PVGSYYMAARAYASA 290 (566)
Q Consensus 276 ~~G~y~~~~~~~~~~ 290 (566)
++|.|.++||.....
T Consensus 110 ~~G~w~~HCHi~~H~ 124 (138)
T PF07731_consen 110 NPGPWLFHCHILEHE 124 (138)
T ss_dssp STEEEEEEESSHHHH
T ss_pred cceEEEEEEchHHHH
Confidence 899999999997544
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.87 E-value=4.6e-07 Score=98.68 Aligned_cols=231 Identities=18% Similarity=0.181 Sum_probs=132.8
Q ss_pred CeEEEecCCEEEEEEEeCC-CCceeEEEeCccccCCCCCCCCC----CCCCCcCCCCCeeEEEEEeCCCCc-ceeEeecc
Q 008422 56 PTIRVHEGDTLIVHVFNKS-PYNLTIHWHGIFQLLSAWADGPS----MITQCPITPGNSYTYKFRIVNQEG-TLWWHAHF 129 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~vtq~~i~PG~~~~Y~f~~~~~~G-t~wYH~H~ 129 (566)
++|.|++|++.++|++|.. .....++.-|....... .||.+ .+....|.||||++.-.++...+| .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 5899999999999999996 45556777666655444 59965 233466999999999999844445 89986532
Q ss_pred h--hhc--cccee-EEEEeCCCCC----CCCC-CCCCcceeEEe---ceec--cc------CH---HH---H-HHHHH-h
Q 008422 130 S--MLR--ATVHG-ALIIRPRSGH----KYPF-PKPNKEVPIIL---GEWW--NA------DI---ID---V-AKQAQ-A 180 (566)
Q Consensus 130 ~--~~~--~Gl~G-~liV~~~~~~----~~~~-~~~~~e~~l~~---~d~~--~~------~~---~~---~-~~~~~-~ 180 (566)
. ... .-+.| +++-+..... +.|. +....+...-. .... .. .. .. + ..... .
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 1 111 11122 2333322111 1111 10000100000 0000 00 00 00 0 00000 0
Q ss_pred cCC-CCCC--CceEEEcCCCCCC----------CCCCC-------C---------CeeEEEEECCcEEEEEEEecccCce
Q 008422 181 TGG-GPNI--SDAYTINGRPGDL----------YPCSQ-------N---------QTYTLKVETGKTYLLRIINAALNNQ 231 (566)
Q Consensus 181 ~g~-~~~~--~~~~liNG~~g~~----------~~~~~-------~---------~~~~~~v~~G~~~rlRliN~~~~~~ 231 (566)
.+. ...+ .-.+.+||.+... +..++ . ....+.++.+++|.+-|-|.. ...
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~-~~~ 454 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA-TNV 454 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-CCC
Confidence 000 0000 1246777775321 00000 0 233456777999999888864 335
Q ss_pred EEEEEcCCeEEEEEecC-----------CCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeeccc
Q 008422 232 LFFKIANHNFTVVAIDA-----------CYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 289 (566)
Q Consensus 232 ~~~~l~gh~~~via~DG-----------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~ 289 (566)
+.||||||.|.|++... +++.|...|++.+.+|.=.-|.+++| +||.|.||||....
T Consensus 455 HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aD-NPG~W~lHCH~~~h 522 (596)
T PLN00044 455 QSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLD-NAGIWNLRVENLDA 522 (596)
T ss_pred CCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecC-CCEEehhhccCchh
Confidence 66999999999996644 23468889999999999999999999 89999999995443
No 40
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.62 E-value=1.1e-07 Score=80.33 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=45.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhccc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT 135 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~G 135 (566)
..|++++|++|+|+++|.....+.+...++... ..|.||++.++.|+. .++|+|=|+|-.++.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~~--- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHPN--- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-T---
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCCc---
Confidence 599999999999999999887766666653321 258999999999986 999999999997763
Q ss_pred ceeEEEE
Q 008422 136 VHGALII 142 (566)
Q Consensus 136 l~G~liV 142 (566)
|.|-|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 5577765
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.62 E-value=1.6e-07 Score=80.91 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=67.4
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
+++.++.|+++++.+.|... ..+.+|+||...- . ..+. +...... .-.|+||+....+|+++
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~---~~~siH~HG~~~~--~---~~~~---DG~~~~~-------~~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLD---EPTSIHWHGLHQP--P---SPWM---DGVPGVT-------QCPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEESS---SGBSEEEETSBST--T---GGGG---SGGTTTS-------GSSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEeccc---cccccccceeeee--e---eeec---CCccccc-------ceeEEeecceeeeEeee
Confidence 78999999999999999753 7899999996521 0 0010 0000000 12478899999999999
Q ss_pred C-ceeEEEEeecccccccccEEEEEEec
Q 008422 522 N-PGVWFMHCHLDVHLPWGLATAFVVEN 548 (566)
Q Consensus 522 n-pG~w~~HCHil~H~~~GM~~~~~V~~ 548 (566)
. +|.|.||||...|..+||.+.|.|++
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~ 115 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEP 115 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcC
Confidence 8 99999999999998899999999975
No 42
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=1.2e-05 Score=87.00 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=66.3
Q ss_pred eEEEEECCcEEEEEEEecccCc--eEEEEEcCCeEEEEEecC-C------------CcCcEEeeEEEECCCceEEEEEee
Q 008422 209 YTLKVETGKTYLLRIINAALNN--QLFFKIANHNFTVVAIDA-C------------YTEPYVTDVVVIAPGQTTDVLLKA 273 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~--~~~~~l~gh~~~via~DG-~------------~~~p~~~d~~~l~pgeR~dv~v~~ 273 (566)
-.++++-+..+.+=|-|.+... .+.+|||||.|.|++.+- + +..|...||+.|.||.=.-|.+.+
T Consensus 430 ~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a 509 (563)
T KOG1263|consen 430 SVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVA 509 (563)
T ss_pred eEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEc
Confidence 4567888888888888887443 356799999999999933 2 224677899999999999999999
Q ss_pred CCCCceeEEEeeecccCC
Q 008422 274 DQPVGSYYMAARAYASAP 291 (566)
Q Consensus 274 ~~~~G~y~~~~~~~~~~~ 291 (566)
+ +||-|.||||......
T Consensus 510 d-NPG~W~~HCHie~H~~ 526 (563)
T KOG1263|consen 510 D-NPGVWLMHCHIEDHLY 526 (563)
T ss_pred C-CCcEEEEEEecHHHHh
Confidence 9 8999999999866543
No 43
>PRK02710 plastocyanin; Provisional
Probab=98.56 E-value=1.4e-06 Score=75.40 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=53.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhccc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT 135 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~G 135 (566)
+.|++++||+| +++|....++++.+.|.. +.. -+...+.||++++|.|+. +|+|-|+|-.|.. .|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H~~-~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE---AGTYTYYCEPHRG-AG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCc--------ccc-ccccccCCCCEEEEEecC---CEEEEEEcCCCcc-CC
Confidence 79999999985 567877778888766431 110 111247999999988863 8999999984332 39
Q ss_pred ceeEEEEe
Q 008422 136 VHGALIIR 143 (566)
Q Consensus 136 l~G~liV~ 143 (566)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.22 E-value=7e-06 Score=68.53 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=54.3
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCC--CCCcCCCCCeeEEEEEeCCCCcceeEeecchhhc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMI--TQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLR 133 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~v--tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~ 133 (566)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|.. +|+|.|+|..| ..
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~~H-~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCEPH-RG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcCCc-cc
Confidence 68999999986 55687777787777654322110 0111111 22347899999998863 99999999822 22
Q ss_pred ccceeEEEEe
Q 008422 134 ATVHGALIIR 143 (566)
Q Consensus 134 ~Gl~G~liV~ 143 (566)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 3999999984
No 45
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.10 E-value=1.8e-05 Score=63.65 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=51.9
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhccc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT 135 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~G 135 (566)
+.|++++||+|. ++|....++++++.........+.. ..+.||+++++.| +++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTVT--WINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEEE--EEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 799999999965 6788778888887653211111111 1357888888766 56999999998766 4
Q ss_pred ceeEEEEe
Q 008422 136 VHGALIIR 143 (566)
Q Consensus 136 l~G~liV~ 143 (566)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 77988885
No 46
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.96 E-value=3.7e-05 Score=68.89 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCC---C--cEEEE
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPV---G--GWAVI 516 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~---~--g~~vi 516 (566)
+.+.++.|++|++++.|... ...|.|-||.+.- .+........ .|.....-.+|+ + ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~--------~~~~~p~mdG----~~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGP--------PYPYMPGMDG----LGFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCC--------ccccccccCC----CCccccCcccCCCCCCccceeEE
Confidence 67889999999999999742 2467766664321 0100000000 011112222332 2 24678
Q ss_pred EEEecCceeEEEEeecccccccccEEEEEEe
Q 008422 517 RFRANNPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 517 rf~adnpG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 8988899999999999999999999999873
No 47
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.93 E-value=4.5e-05 Score=82.18 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=68.4
Q ss_pred eccCceeEE--EEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEE
Q 008422 37 IGRLCRQQT--ITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKF 114 (566)
Q Consensus 37 ~~~~g~~~~--~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f 114 (566)
+.++|.... +.+..-.+--+.|+|++||+|+++|+|.....=.+ ||...+.. |+ . .-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~-~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---N-MEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---c-EEEcCCceEEEEE
Confidence 456665544 44455555446899999999999999963211112 55554322 11 1 2477999999999
Q ss_pred EeCCCCcceeEeecchhhcc--cceeEEEEeCC
Q 008422 115 RIVNQEGTLWWHAHFSMLRA--TVHGALIIRPR 145 (566)
Q Consensus 115 ~~~~~~Gt~wYH~H~~~~~~--Gl~G~liV~~~ 145 (566)
++ +++|.|||||....... +|.|-++|+|+
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 98 99999999998754332 99999999874
No 48
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.93 E-value=3.3e-05 Score=64.47 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=52.9
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccC-CCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLL-SAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA 134 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~-~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~ 134 (566)
+.|++++||+| ++.|....++++.+---.... .......+.-....+.||+++++.|+ .+|+|.|+|-. ....
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 79999999986 466666667777663311100 00000001101234789999999887 69999999984 3334
Q ss_pred cceeEEEEe
Q 008422 135 TVHGALIIR 143 (566)
Q Consensus 135 Gl~G~liV~ 143 (566)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999985
No 49
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.82 E-value=0.00011 Score=67.13 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=75.2
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
...+.++.|+++.|+|.|.+. ...+.|++.||+|+|++.... +..|...|++.|.+|+.+-+.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 468899999999999999764 357999999999999997421 123678899999999999999999
Q ss_pred cC-ceeEEEEe----ecccccccccEEEEEEe
Q 008422 521 NN-PGVWFMHC----HLDVHLPWGLATAFVVE 547 (566)
Q Consensus 521 dn-pG~w~~HC----Hil~H~~~GM~~~~~V~ 547 (566)
+. +|.|.++| +...+...|+...+.+-
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 87 99999999 55667778887777654
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.79 E-value=0.00027 Score=64.98 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=73.6
Q ss_pred EEEECCCCCC-CeEEEecCCEEEEEEEeCCCCceeEEE--eCcccc--CCCCCCCCC----C-----CCCCcCCCCCeeE
Q 008422 46 ITAVNGSLPG-PTIRVHEGDTLIVHVFNKSPYNLTIHW--HGIFQL--LSAWADGPS----M-----ITQCPITPGNSYT 111 (566)
Q Consensus 46 ~~~~NG~~pG-P~i~~~~Gd~v~v~v~N~l~~~~~iH~--HG~~~~--~~~~~DG~~----~-----vtq~~i~PG~~~~ 111 (566)
.+.|||..-| ++|.+..|-+|.|+|+|....++++-. -+..++ ..-..||.. | .....|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 6678998888 899999999999999999655554332 222111 112235521 1 1234688999998
Q ss_pred EEEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCCC
Q 008422 112 YKFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSGH 148 (566)
Q Consensus 112 Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~ 148 (566)
-.|.. -++|.|||-|-..+... ||++-|+|.+.-..
T Consensus 155 ~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 155 GVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred EEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 77764 78999999999988877 99999999876543
No 51
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.73 E-value=0.00034 Score=62.83 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=70.5
Q ss_pred EEECCCCCC-CeEEEecCCEEEEEEEeCCCCceeEEEeCcc--cc--CCCCCCCCC----CCC-----CCcCCCCCeeEE
Q 008422 47 TAVNGSLPG-PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIF--QL--LSAWADGPS----MIT-----QCPITPGNSYTY 112 (566)
Q Consensus 47 ~~~NG~~pG-P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~--~~--~~~~~DG~~----~vt-----q~~i~PG~~~~Y 112 (566)
+-|||+..| |+|.+..|-+|.|+|+|....++++-.---. .+ .....||.. |.+ -..|.+|++..-
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 678999988 8999999999999999997666655441111 01 011125522 222 134668888555
Q ss_pred EEEeCCCCcceeEeecchhhcc-cceeEEEEeCCCC
Q 008422 113 KFRIVNQEGTLWWHAHFSMLRA-TVHGALIIRPRSG 147 (566)
Q Consensus 113 ~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~ 147 (566)
.|.. -++|+|||-|-..+... ||+|.+||-..-.
T Consensus 155 ~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 155 WWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred Eecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 5554 89999999999887776 9999999986643
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.47 E-value=0.00059 Score=56.87 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=57.8
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|++|+|+ |.+. ..|-+.++...+.. +.. .....+..+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~~---~~H~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKG---GPHNVVFDEDAVPA-----GVK---------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECCC---CCceEEECCCCCcc-----chh---------hhcccccccccccCCCCEEEEEeCC-
Confidence 56789999999887 4332 57777765432111 000 0011123567788999998887775
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
||.|.|||- .|..+||.+.+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.38 E-value=0.0011 Score=56.55 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=48.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEE-eCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHW-HGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA 134 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~-HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~ 134 (566)
..|++++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.| +.+|+|-|+|-.|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH~~~- 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPHYGM- 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCCccC-
Confidence 699999999977766654 455444 2211 133221 1123566655555 5799999999854333
Q ss_pred cceeEEEEeCCC
Q 008422 135 TVHGALIIRPRS 146 (566)
Q Consensus 135 Gl~G~liV~~~~ 146 (566)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998753
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.17 E-value=0.0024 Score=55.08 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=53.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhccc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRAT 135 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~G 135 (566)
-.|++++||+ |++.|.....++++.-+... . +|.- .....+|+++++.|. .+|+|-|+|-.|... |
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~---~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~~~-g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD---P--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHPGM-G 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC---c--cccc---ccccCCCcceEEEec---ccceEEEEeccCCCC-C
Confidence 4999999999 67788877788887766541 1 2321 133455677777774 499999999765433 8
Q ss_pred ceeEEEEeC
Q 008422 136 VHGALIIRP 144 (566)
Q Consensus 136 l~G~liV~~ 144 (566)
|.|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999964
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.12 E-value=0.0038 Score=53.20 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=49.1
Q ss_pred CeEEEecCCEEEEEEEeC-CCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcc
Q 008422 56 PTIRVHEGDTLIVHVFNK-SPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRA 134 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~ 134 (566)
..|++++||+|+ ++|. ...++++..-+ ...| | .......||++|+|.|. ++|+|-|+|-.|...
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH~~~- 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTFE---EPGIYLYVCVPHEAL- 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEec---CCcEEEEEccCCCCC-
Confidence 689999999966 6654 34566665311 0111 1 11123578999998884 699999999866332
Q ss_pred cceeEEEEe
Q 008422 135 TVHGALIIR 143 (566)
Q Consensus 135 Gl~G~liV~ 143 (566)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 888999984
No 56
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.06 E-value=0.0027 Score=55.26 Aligned_cols=60 Identities=17% Similarity=0.388 Sum_probs=47.9
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|+.|+|.+.|.+. ..|.+-++++.+ ...+++|....++|.++
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~---~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSP---ISEGFSIDAYGI----------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred CEEEECCCCEEEEEEEeCCC---CccceEECCCCc----------------------------ceEECCCCeEEEEEECC
Confidence 45789999999999998653 567766665421 23678899999999999
Q ss_pred CceeEEEEeec
Q 008422 522 NPGVWFMHCHL 532 (566)
Q Consensus 522 npG~w~~HCHi 532 (566)
.||.|-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999964
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.87 E-value=0.0095 Score=49.58 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=55.0
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|++|.|+..+. ..|.+.+=- . .+.......... ..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~~-----~~Hnv~~~~-------~---~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDS-----MPHNVVFVA-------D---GMPAGADSDYVP----PGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEESS-----SSBEEEEET-------T---SSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECCC-----CCceEEEec-------c---cccccccccccC----ccccceecCCCCEEEEEeC--
Confidence 567899999999877632 556655432 1 111100000000 1115667888888888877
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
.+|.|.|+|- - |..+||-+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 8999999999 4 9999999999984
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.40 E-value=0.015 Score=63.14 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=59.0
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|+.|.+++.|.....+..|-|-+-++... +.+.||....+.|+++
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~ad 606 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTAD 606 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcC
Confidence 347899999999999996433356777777544311 2455888999999999
Q ss_pred CceeEEEEeeccccc-ccccEEEEEEec
Q 008422 522 NPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 522 npG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
.||.|.+||...-|. +.+|...+.|++
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999974432 248888888863
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.32 E-value=0.019 Score=48.18 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=41.8
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|+.+.+++.|.+. ..|-|.+-+. .. ...+++|+...+.|.++
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~---------------------------~~-~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDS---RPHEFVIPDL---------------------------GI-SKVLPPGETATVTFTPL 83 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SS---S-EEEEEGGG---------------------------TE-EEEE-TT-EEEEEEEE-
T ss_pred CEEEEcCCCeEEEEEEECCC---CcEEEEECCC---------------------------ce-EEEECCCCEEEEEEcCC
Confidence 56889999999999999754 3344443331 12 25788999999999999
Q ss_pred CceeEEEEeeccccccccc
Q 008422 522 NPGVWFMHCHLDVHLPWGL 540 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM 540 (566)
.||.|-|+|-+-.+ +.|.
T Consensus 84 ~~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 84 KPGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp S-EEEEEB-SSS-T-TB--
T ss_pred CCEEEEEEcCCCCc-ceec
Confidence 99999999995554 3443
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.72 E-value=0.056 Score=46.60 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=50.5
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|++|+|+ |.+. ..|.+.+.+... +. .+| ..+.+|....+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~~~---~~H~v~~~~~~~---------~~--------------~~~-~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNKL---APHNAVFDGAKE---------LS--------------HKD-LAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--ECCC---CCceEEecCCcc---------cc--------------ccc-cccCCCCEEEEEecC-
Confidence 45788999999886 4322 578776542210 00 111 346677777777764
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
||.|.|+|= .|...||-+.+.|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999996 89999999999883
No 61
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.17 E-value=0.14 Score=47.37 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=62.5
Q ss_pred eEEEcCCCCCCCCCCCCCeeEEEEECCcEEEEEEEecccCceEEEEEc--CC---eEEEEEecCCCc-C----cEEeeEE
Q 008422 190 AYTINGRPGDLYPCSQNQTYTLKVETGKTYLLRIINAALNNQLFFKIA--NH---NFTVVAIDACYT-E----PYVTDVV 259 (566)
Q Consensus 190 ~~liNG~~g~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~--gh---~~~via~DG~~~-~----p~~~d~~ 259 (566)
.+-+||... ....+.+.+|-+|.++++|.+... |+|-+- +- ..-.++.||..+ . +-....-
T Consensus 75 ~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~~l~-Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~ 145 (196)
T PF06525_consen 75 PFNFNGTSN--------GQMTIYVPAGWNVQITFTNQESLP-HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSN 145 (196)
T ss_pred ceeeecccC--------CcEEEEEcCCCEEEEEEEcCCCCC-eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccC
Confidence 566788742 457899999999999999998544 334442 11 224677777655 1 1112234
Q ss_pred EECCCceEEEEEeeCCCCceeEEEeeecccCC
Q 008422 260 VIAPGQTTDVLLKADQPVGSYYMAARAYASAP 291 (566)
Q Consensus 260 ~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~~~ 291 (566)
-|.+||++...+... .+|.||+.|.......
T Consensus 146 GI~~G~s~~~~~~~l-~aG~YwlvC~ipGHA~ 176 (196)
T PF06525_consen 146 GISSGQSASGVYNDL-PAGYYWLVCGIPGHAE 176 (196)
T ss_pred CccCCceeeEEEccC-CCceEEEEccCCChhh
Confidence 567999999877544 6899999999876554
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.27 Score=43.52 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCCCeEEEecCCEEEEEEEeCCC--CceeE---------EEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCC
Q 008422 52 SLPGPTIRVHEGDTLIVHVFNKSP--YNLTI---------HWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQE 120 (566)
Q Consensus 52 ~~pGP~i~~~~Gd~v~v~v~N~l~--~~~~i---------H~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~ 120 (566)
.+++-.+.++.|++++..+.|... ...++ -.|...... +++- ......+.||++-+..|.. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 356678999999999999999842 11111 123333321 1221 1122459999999999998 899
Q ss_pred cceeEeecchhhcc-cceeEEEEeC
Q 008422 121 GTLWWHAHFSMLRA-TVHGALIIRP 144 (566)
Q Consensus 121 Gt~wYH~H~~~~~~-Gl~G~liV~~ 144 (566)
|.|=+-|-..+.+. ||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 99999999999998 9999998864
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.47 E-value=0.26 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=29.4
Q ss_pred CCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecC
Q 008422 510 VGGWAVIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENG 549 (566)
Q Consensus 510 ~~g~~virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~ 549 (566)
++.... ++++.||.+-|+|= .|..+||-+.+.|.++
T Consensus 54 ~g~~~~--~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEEYT--VTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCEEE--EEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 344444 44578999999998 9999999999999874
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.12 E-value=0.35 Score=41.74 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchh-hcc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSM-LRA 134 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~-~~~ 134 (566)
+.|.+..|++|++++++. +.-+++...++..+ .-+-||......|++ +++|+|++.|..-. ...
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k-------------~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGIK-------------MDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTEE-------------EEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred ceecccccceEeEEEEcC-CccccccccccCcc-------------cccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 799999999999999996 34444444333222 235689999999998 99999999997532 222
Q ss_pred -cceeEEEE
Q 008422 135 -TVHGALII 142 (566)
Q Consensus 135 -Gl~G~liV 142 (566)
.|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 56676665
No 65
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=93.21 E-value=0.7 Score=47.74 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=52.9
Q ss_pred CCCCCeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCC-CCCcCCCCCeeEEEEEeCCCCcceeEeecch
Q 008422 52 SLPGPTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMI-TQCPITPGNSYTYKFRIVNQEGTLWWHAHFS 130 (566)
Q Consensus 52 ~~pGP~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~v-tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 130 (566)
++--..+.+..|+ +++.|+|....++.+-.- +|+--+ ....|.||.+.++.+++ .+|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC
Confidence 3433699999996 999999997666442111 111000 11369999999987765 699999999443
Q ss_pred hhcccceeEEEEeCCC
Q 008422 131 MLRATVHGALIIRPRS 146 (566)
Q Consensus 131 ~~~~Gl~G~liV~~~~ 146 (566)
..+.|.++|....
T Consensus 107 ---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 ---TNPKGKLIVKGEA 119 (375)
T ss_pred ---CCCCceEEEeCCC
Confidence 2346899998543
No 66
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.17 E-value=0.64 Score=37.12 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=44.3
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.+..|++|.|+ |.+ ...|-.+.+.-.+ +..+ ++ ...+.++... +++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~--~~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAY--SLTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCEE--EEECC
Confidence 55788999999984 432 2678887653211 0000 01 1122344444 45567
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
.||.|.|||=+ |- +|-+.+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999986 44 488888773
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.86 E-value=0.54 Score=40.30 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=53.7
Q ss_pred CeEEEecC-CEEEEEEEeCCCCceeEEEeCccccCCCCC-----CC---------CCCC-C-----CCcCCCCCeeEEEE
Q 008422 56 PTIRVHEG-DTLIVHVFNKSPYNLTIHWHGIFQLLSAWA-----DG---------PSMI-T-----QCPITPGNSYTYKF 114 (566)
Q Consensus 56 P~i~~~~G-d~v~v~v~N~l~~~~~iH~HG~~~~~~~~~-----DG---------~~~v-t-----q~~i~PG~~~~Y~f 114 (566)
..|.|..+ .+|.|+|.|....+-..--|.+-.....-+ || +|.- . ---|.|||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 68999984 799999999854332221221110000000 11 2210 0 12488999999999
Q ss_pred EeCC-CCcc-eeEeecchhhcccceeEEE
Q 008422 115 RIVN-QEGT-LWWHAHFSMLRATVHGALI 141 (566)
Q Consensus 115 ~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 141 (566)
+++. ++|+ |-|-|-..+....|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9852 6786 9999998888778888775
No 68
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.72 E-value=0.27 Score=43.58 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=63.0
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
+...++.|++++.++.|... ..|=|=+- ++.... +.+... ....-..---..++.+-||....+-+.+.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred CcccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHh---hhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 33567789999999998754 33433222 111111 111000 00000011245689999999999999999
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
++|.+-|-|-|-+|-+.||-.-|.|.
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999999984
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.40 E-value=1.5 Score=37.49 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=47.7
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..+.++.|++|.|+.+... ..|-.. ..+.+.|+.. .....++....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~d~----~~HnV~---------s~~~~~f~s~---------------~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGEG----GGHNVV---------SDGDGDLDES---------------ERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECCCC----CCEEEE---------ECCCCCcccc---------------ccccCCCCEEEEEe--c
Confidence 4578999999999765321 345432 2222333310 11223455555555 7
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVE 547 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~ 547 (566)
.||.|.|+|= .|..+||-..+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999998 89999999999884
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=88.37 E-value=7.8 Score=33.35 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=52.8
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.+.+.+.+.+ ..|-|.+-+....+ .+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D----ViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED----VIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS----S-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcCC----ccccccccccCccc----------------------------ccccccceeeeeee
Confidence 46788999999999999854 57877776543332 34577888899999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEE
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVV 546 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V 546 (566)
+.||.+-..|...=.. +.-|...++|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999877643 3445555544
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.46 E-value=6.5 Score=31.31 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEEEEecccCceEEEEEc-CCeEE--EEEecCCCcC--------cEEeeEEEECCCceEEEEEeeCCC---CceeEEEe
Q 008422 219 YLLRIINAALNNQLFFKIA-NHNFT--VVAIDACYTE--------PYVTDVVVIAPGQTTDVLLKADQP---VGSYYMAA 284 (566)
Q Consensus 219 ~rlRliN~~~~~~~~~~l~-gh~~~--via~DG~~~~--------p~~~d~~~l~pgeR~dv~v~~~~~---~G~y~~~~ 284 (566)
+.|++.|.+.. ...|.+. |+.+. |...+|..+- -.......|.|||...+-.+.+.. +|.|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 45667777633 3335543 44433 3334555441 134578999999999999888752 79998753
No 72
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=86.76 E-value=1.5 Score=35.03 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=30.9
Q ss_pred eEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCC---CCCCcCCCCCeeEEEEEeCC-C--CcceeE
Q 008422 57 TIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSM---ITQCPITPGNSYTYKFRIVN-Q--EGTLWW 125 (566)
Q Consensus 57 ~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~---vtq~~i~PG~~~~Y~f~~~~-~--~Gt~wY 125 (566)
+|+..-|++..+.|.|...+.. -.|++|-.. +.+..|.||++.+|+++.+. . +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~v-----------wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKEV-----------WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--EE-----------EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCEE-----------EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 5666666666666665432211 145677542 33456999999999999973 3 688854
No 73
>COG1470 Predicted membrane protein [Function unknown]
Probab=86.08 E-value=47 Score=35.18 Aligned_cols=176 Identities=18% Similarity=0.307 Sum_probs=102.0
Q ss_pred EEEecCCE--EEEEEEeCC--CCceeEEEeCcc-ccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCC----CCcceeEeec
Q 008422 58 IRVHEGDT--LIVHVFNKS--PYNLTIHWHGIF-QLLSAWADGPSMITQCPITPGNSYTYKFRIVN----QEGTLWWHAH 128 (566)
Q Consensus 58 i~~~~Gd~--v~v~v~N~l--~~~~~iH~HG~~-~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~----~~Gt~wYH~H 128 (566)
+.+.++++ +.|++.|.. ++...+-.-|+. .....|.+|--.++...+.|||+.+....+.. .+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 45566665 667788885 456667666654 22233346666777888999999998887721 23443
Q ss_pred chhhcccceeEEEEeCCCCCCCCCCCCCcceeEEeceecccCHHHHHHHHHhcCCCCCCCceEEEcCCCCCCCCCCCCCe
Q 008422 129 FSMLRATVHGALIIRPRSGHKYPFPKPNKEVPIILGEWWNADIIDVAKQAQATGGGPNISDAYTINGRPGDLYPCSQNQT 208 (566)
Q Consensus 129 ~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~g~~~~~~~~~~ 208 (566)
-..|+-.... ...++.++-+.- .|. .....-+-||.
T Consensus 353 ---------nv~I~A~s~s------~v~~e~~lki~~---------------~g~--~~~~v~l~~g~------------ 388 (513)
T COG1470 353 ---------NVTITASSSS------GVTRELPLKIKN---------------TGS--YNELVKLDNGP------------ 388 (513)
T ss_pred ---------eEEEEEeccc------cceeeeeEEEEe---------------ccc--cceeEEccCCc------------
Confidence 4444443221 122344443311 110 01112233444
Q ss_pred eEEEEECCc--EEEEEEEecccCc--eEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEE--EEeeCC--CCcee
Q 008422 209 YTLKVETGK--TYLLRIINAALNN--QLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDV--LLKADQ--PVGSY 280 (566)
Q Consensus 209 ~~~~v~~G~--~~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv--~v~~~~--~~G~y 280 (566)
..+++++|+ .++++|-|.|+.. ...+.+.+-+=|-+.+|+..+ + .|.||+|-.| -++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 467888884 5789999999654 456677765557777777533 2 2455655444 555543 56899
Q ss_pred EEEeeeccc
Q 008422 281 YMAARAYAS 289 (566)
Q Consensus 281 ~~~~~~~~~ 289 (566)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 888776554
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.68 E-value=8.3 Score=36.47 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=54.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecch-hhcc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFS-MLRA 134 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~~~~ 134 (566)
..|.+..|+.|++++++.. .+ ||...+.. |+ +.-+-||..-+..|++ +++|+|...|..- |...
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999853 12 55554321 11 1335689999989987 9999999998753 2222
Q ss_pred -cceeEEEEeCCC
Q 008422 135 -TVHGALIIRPRS 146 (566)
Q Consensus 135 -Gl~G~liV~~~~ 146 (566)
.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 788888888654
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=84.45 E-value=2 Score=36.87 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=53.5
Q ss_pred CeeEEEEECC-cEEEEEEEecccCc----eEEEEEc-CCeEEEE-------EecCCCcCc----EEeeEEEECCCceEEE
Q 008422 207 QTYTLKVETG-KTYLLRIINAALNN----QLFFKIA-NHNFTVV-------AIDACYTEP----YVTDVVVIAPGQTTDV 269 (566)
Q Consensus 207 ~~~~~~v~~G-~~~rlRliN~~~~~----~~~~~l~-gh~~~vi-------a~DG~~~~p----~~~d~~~l~pgeR~dv 269 (566)
....|+|+++ +.+.+.|-|.|... .|++-|- .-.+.-+ +.|-+|+.+ +...|=.|++||..+|
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 3457899984 88999999998543 2333332 1122222 234456632 3457889999999999
Q ss_pred EEeeCC-CCc-eeEEEeee
Q 008422 270 LLKADQ-PVG-SYYMAARA 286 (566)
Q Consensus 270 ~v~~~~-~~G-~y~~~~~~ 286 (566)
.++++. .+| +|.+.|..
T Consensus 94 tF~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EEECCCCCCCCcceEEEcC
Confidence 999863 456 69999875
No 76
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=83.06 E-value=7.7 Score=33.70 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=45.5
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
..++++-|++|+|+.... ..|-.+.=+-. .+ ..-+++..-.+.....-| +
T Consensus 54 A~v~v~pGDTVtw~~~d~-----~~Hnv~~~~~~---------~~--------------~g~~~~~~~~~~s~~~Tf--e 103 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDS-----VGHNVTAVGGM---------DP--------------EGSGTLKAGINESFTHTF--E 103 (128)
T ss_pred cEEEECCCCEEEEEECCC-----CCceEEEeCCC---------Cc--------------ccccccccCCCcceEEEe--c
Confidence 456889999999976532 35654432221 00 011111112223333444 4
Q ss_pred CceeEEEEeecccccccccEEEEEEec
Q 008422 522 NPGVWFMHCHLDVHLPWGLATAFVVEN 548 (566)
Q Consensus 522 npG~w~~HCHil~H~~~GM~~~~~V~~ 548 (566)
-||.|.|.| ..|..+||-+.+.|++
T Consensus 104 ~~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 104 TPGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred ccceEEEEe--ccCCCCCcEEEEEeCC
Confidence 599999999 5799999999999853
No 77
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=82.86 E-value=13 Score=34.02 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=59.1
Q ss_pred cceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCC-CCCccc--ccccccC--CCCCcceeEEeCCCcEE
Q 008422 440 RTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFG-NFDAAR--DRQKFNL--VNPQRRNTIAVPVGGWA 514 (566)
Q Consensus 440 ~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~~--~~~~~n~--~~p~~rDTv~vp~~g~~ 514 (566)
+...+-++.|-+|.++|.|... .+ |.+-++..+.. +..+.. +.+.+++ ..+..-..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~---~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYES---LP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCC---CC-------ccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 4477889999999999999753 44 44555544321 100000 0000000 00000000112344455
Q ss_pred EEEEEecCceeEEEEeecccccccccEEEEEEecC
Q 008422 515 VIRFRANNPGVWFMHCHLDVHLPWGLATAFVVENG 549 (566)
Q Consensus 515 virf~adnpG~w~~HCHil~H~~~GM~~~~~V~~~ 549 (566)
..-|..--||.+.+=|=|.-|.++||-..+.|-.+
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 56666667999999999999999999999988653
No 78
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=82.60 E-value=6.1 Score=37.38 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=54.0
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.|++.+.+.+ ..|.|. |-+.+ ...| +-||....+.|++
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~Hsf~-------ip~~~------------------~k~d---a~PG~~~~~~~~~ 163 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VIHSFW-------VPELG------------------GKID---AIPGQYNALWFNA 163 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hhhccc-------ccccC------------------ceEE---ecCCcEEEEEEEe
Confidence 35688999999999999754 345544 43221 0123 4478888899999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEEec
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
+.||.+...|-..-.. +..|...++|.+
T Consensus 164 ~~~G~y~~~c~e~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGHSLMLFKVVVVE 192 (201)
T ss_pred CCCEEEEEEehhhCCcCccCCeEEEEEEC
Confidence 9999999999983322 377888888764
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=80.40 E-value=13 Score=36.25 Aligned_cols=77 Identities=9% Similarity=-0.018 Sum_probs=56.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchh-hcc
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSM-LRA 134 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~-~~~ 134 (566)
..|.+..|.+|++.++=. +.-++....++... .-.-||...+..+++ +++|+|.-+|+.-. ...
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~k-------------~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGGK-------------IDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCce-------------eeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998876 33334433333221 235678899999987 99999999998643 333
Q ss_pred -cceeEEEEeCCCC
Q 008422 135 -TVHGALIIRPRSG 147 (566)
Q Consensus 135 -Gl~G~liV~~~~~ 147 (566)
.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 7999999998763
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=79.44 E-value=2.8 Score=43.56 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=49.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhh-c-
Q 008422 56 PTIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSML-R- 133 (566)
Q Consensus 56 P~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~-~- 133 (566)
-++.|++||.|++.++|-......+ ||.-.+. -|+. ..+.|-++-.|.|.+ +.+|.+||.|--.-. .
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 4677888888888888875443333 3332221 1221 347888999999998 999999998743221 1
Q ss_pred ccceeEEEEe
Q 008422 134 ATVHGALIIR 143 (566)
Q Consensus 134 ~Gl~G~liV~ 143 (566)
.-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 1455666665
No 81
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=63.04 E-value=63 Score=25.88 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=38.2
Q ss_pred CCeEEEe---cCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEe
Q 008422 55 GPTIRVH---EGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRI 116 (566)
Q Consensus 55 GP~i~~~---~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~ 116 (566)
.|.+.++ ....|+|+|.|....+..+........ .+.+ .+..|+||++.+..|.+
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~--~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP--WTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC--EEEEECCCCEEEEEEee
Confidence 4555554 245899999999888877777663211 1222 34679999999999987
No 82
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=62.64 E-value=78 Score=25.36 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=40.6
Q ss_pred EEECCcEEE--EEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEE-EECCCceEEEEEeeCC-CCceeEEEeeec
Q 008422 212 KVETGKTYL--LRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVV-VIAPGQTTDVLLKADQ-PVGSYYMAARAY 287 (566)
Q Consensus 212 ~v~~G~~~r--lRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~-~l~pgeR~dv~v~~~~-~~G~y~~~~~~~ 287 (566)
.+.+|+.++ +.+.|.|....-.+.+. +-.||..+ ....| .|.||+...+.+.... .+|.|.+.+...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 466677664 77889987654433333 23455433 34455 7899999998887753 678888877654
No 83
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=57.44 E-value=17 Score=30.84 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=27.9
Q ss_pred EEEEeCCCCc---eeEEEeCccccCCC---CCCCCCCCCCCcCCCCCeeEEEEE
Q 008422 68 VHVFNKSPYN---LTIHWHGIFQLLSA---WADGPSMITQCPITPGNSYTYKFR 115 (566)
Q Consensus 68 v~v~N~l~~~---~~iH~HG~~~~~~~---~~DG~~~vtq~~i~PG~~~~Y~f~ 115 (566)
|++.|....+ .+=|||=-...+.. .-+||-| .|.-|+||++|+|.=-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg 86 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSG 86 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCC
Confidence 6777776544 35688744322211 0145544 3677999999999643
No 84
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=57.01 E-value=46 Score=32.54 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=52.8
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.|++.+...+ ..|-| +|-+.+ --+.+-||-...+.+++
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHsF-------~IP~l~---------------------~k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHSF-------WIPQLG---------------------GKIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hceeE-------EecCCC---------------------ceeeecCCceEEEEEec
Confidence 36788999999999998653 44554 443322 11233466777889999
Q ss_pred cCceeEEEEeecccc-cccccEEEEEEec
Q 008422 521 NNPGVWFMHCHLDVH-LPWGLATAFVVEN 548 (566)
Q Consensus 521 dnpG~w~~HCHil~H-~~~GM~~~~~V~~ 548 (566)
+.||.|-.+|+..-= -+..|-..+.|.+
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs 212 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVS 212 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEc
Confidence 999999999998873 3455666666654
No 85
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=55.14 E-value=1.3e+02 Score=25.44 Aligned_cols=37 Identities=8% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCc--CcEEeeEEEECCCceEEEEEeeC
Q 008422 238 NHNFTVVAIDACYT--EPYVTDVVVIAPGQTTDVLLKAD 274 (566)
Q Consensus 238 gh~~~via~DG~~~--~p~~~d~~~l~pgeR~dv~v~~~ 274 (566)
.+++++...++... .+....++.|.+|..|.+.+.-.
T Consensus 44 ~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 44 TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECC
Confidence 45666655555432 24556677777777777777654
No 86
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=51.93 E-value=57 Score=27.31 Aligned_cols=66 Identities=29% Similarity=0.390 Sum_probs=41.5
Q ss_pred EEEEEeCCCCc--eeEEEeCccccCCCCCC-CCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhcccceeEEEEe
Q 008422 67 IVHVFNKSPYN--LTIHWHGIFQLLSAWAD-GPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLRATVHGALIIR 143 (566)
Q Consensus 67 ~v~v~N~l~~~--~~iH~HG~~~~~~~~~D-G~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 143 (566)
.|+++|.|... ..+|..--.. | |. ..+.||+++..+|.. .--|+--|.|+..-.......-+.|.
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d~------Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy 69 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKDD------DLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVY 69 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCCc------cCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEE
Confidence 58899999443 4555554421 2 32 459999999999986 55577777788755111134555554
Q ss_pred C
Q 008422 144 P 144 (566)
Q Consensus 144 ~ 144 (566)
.
T Consensus 70 ~ 70 (110)
T PF05938_consen 70 R 70 (110)
T ss_pred e
Confidence 3
No 87
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=51.63 E-value=62 Score=25.10 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=30.4
Q ss_pred EECCcE--EEEEEEecccCc--eEEEEEcCCeEEEEEecCCCc--CcEEeeEEEECCCceEEEEEeeC--C--CCceeEE
Q 008422 213 VETGKT--YLLRIINAALNN--QLFFKIANHNFTVVAIDACYT--EPYVTDVVVIAPGQTTDVLLKAD--Q--PVGSYYM 282 (566)
Q Consensus 213 v~~G~~--~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~--~p~~~d~~~l~pgeR~dv~v~~~--~--~~G~y~~ 282 (566)
|.+|+. +++.+.|.+... ...+++. .-+|-.+ .|..+. .|.||+...+.++.. . .+|+|.+
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 345655 467788988543 2333333 2233322 333333 889998777665553 2 5799988
Q ss_pred Eee
Q 008422 283 AAR 285 (566)
Q Consensus 283 ~~~ 285 (566)
...
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 755
No 88
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=51.35 E-value=40 Score=32.52 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=43.7
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+++||++...... |.|+| |.-.-....-||..-.+.++++ .+|.|...|.-+.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 467889999998888766522 44554 3333334455899999999988 7899999998654
No 89
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=49.35 E-value=23 Score=28.77 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=29.1
Q ss_pred EEEEEEEecccCceEEEEEcCCeEEEEEecCCCc--C--cEEeeEEEECCCceEEE
Q 008422 218 TYLLRIINAALNNQLFFKIANHNFTVVAIDACYT--E--PYVTDVVVIAPGQTTDV 269 (566)
Q Consensus 218 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~~~l~pgeR~dv 269 (566)
.|++||-|.+.. .+.|-...+.+...||... + .+....=.|.|||.+.-
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 488999999966 3567677777777777432 1 12235567888886655
No 90
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=48.51 E-value=41 Score=27.35 Aligned_cols=72 Identities=11% Similarity=0.015 Sum_probs=41.3
Q ss_pred EEECCcEEEEEEE--ecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEE-EECCCceEEEEEeeCCC--CceeEEEeee
Q 008422 212 KVETGKTYLLRII--NAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVV-VIAPGQTTDVLLKADQP--VGSYYMAARA 286 (566)
Q Consensus 212 ~v~~G~~~rlRli--N~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~-~l~pgeR~dv~v~~~~~--~G~y~~~~~~ 286 (566)
.-+|||++.||.+ +..+ ......-....++|..-+|..+ ..... .......++..+..+++ .|.|.+++..
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 3579999999999 6652 1110011123356666666433 12223 34678888888888763 5999998886
Q ss_pred c
Q 008422 287 Y 287 (566)
Q Consensus 287 ~ 287 (566)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 4
No 91
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.68 E-value=55 Score=31.61 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=43.5
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+++||++.+... .|.|.+.+.. -.+..-||..-.+.++++ .+|.|...|.-+-
T Consensus 140 n~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~----------------~k~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV--IHSWTVPSLG----------------VKVDAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc--ccceeccccC----------------ceeECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 36789999999999988542 3333443322 224455888888888888 7899999998654
No 92
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=47.65 E-value=71 Score=24.12 Aligned_cols=66 Identities=15% Similarity=0.309 Sum_probs=36.1
Q ss_pred eeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEee
Q 008422 208 TYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAAR 285 (566)
Q Consensus 208 ~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~ 285 (566)
...++++.|+++++.+-+.+.. ..+.|...+|..+....-.. -..+..-.+.+.+. .+|+|.++..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 4678999999999888776642 22556665654331110000 00122233334444 6799988754
No 93
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=47.27 E-value=1.9e+02 Score=25.76 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=39.7
Q ss_pred CceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCC---ceeEEEeCcccc------CCCCCCCCCCC-----CCCcCC
Q 008422 40 LCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPY---NLTIHWHGIFQL------LSAWADGPSMI-----TQCPIT 105 (566)
Q Consensus 40 ~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~---~~~iH~HG~~~~------~~~~~DG~~~v-----tq~~i~ 105 (566)
+|+...+-.=| -|-+.=.+++|.+..|.+.=...+ ...--.||+..- +....||-+.- --||+.
T Consensus 34 ~g~~~~V~i~~--C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~ 111 (158)
T KOG4063|consen 34 DGTPLEVKIDG--CPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLS 111 (158)
T ss_pred CCcceEEEecC--CCCCceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCccc
Confidence 45544443322 122344567788766665544322 111223443321 11124664422 349999
Q ss_pred CCCeeEEEEEeC
Q 008422 106 PGNSYTYKFRIV 117 (566)
Q Consensus 106 PG~~~~Y~f~~~ 117 (566)
+||.++|.+.++
T Consensus 112 age~ytY~~slp 123 (158)
T KOG4063|consen 112 AGEDYTYLNSLP 123 (158)
T ss_pred CCCceEEEEEee
Confidence 999999999884
No 94
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=46.65 E-value=47 Score=28.87 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=34.6
Q ss_pred EEEEEEEecccCceEEEEEcCCeEEEEEecCCCc----CcEEeeEEEECCCceEEE
Q 008422 218 TYLLRIINAALNNQLFFKIANHNFTVVAIDACYT----EPYVTDVVVIAPGQTTDV 269 (566)
Q Consensus 218 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~----~p~~~d~~~l~pgeR~dv 269 (566)
.|++||.|.+.. .+.|-...+.+...||... +.+....=.|.|||.+.-
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 478999998843 3677788888888888643 234445667888886654
No 95
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=46.51 E-value=1.3e+02 Score=25.97 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=42.8
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCc-------CcEEeeEEEECCCceEEEEEeeCC
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYT-------EPYVTDVVVIAPGQTTDVLLKADQ 275 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-------~p~~~d~~~l~pgeR~dv~v~~~~ 275 (566)
.+++.....|+|++...+ ..+|.|+|.. ||..++..- .+....++.|..|++|+|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 366766677999998444 4667899887 566666433 345678899999999999988764
No 96
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=44.01 E-value=66 Score=31.05 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=52.2
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
+.+.++.|+.|++.+...+ -.| .|+|-..+ ..+|.+ ||-...+.|++|
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViH-------SF~VP~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMN-------SFFIPQLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhh-------hhhhhhcC------------------CeeecC---CCceEEEEEEeC
Confidence 5678999999999998653 344 45554332 134554 677788999999
Q ss_pred CceeEEEEeeccccc-ccccEEEEEEec
Q 008422 522 NPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 522 npG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
.||.|.-.|--.-=. +..|...++|.+
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATD 214 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 999999999755422 356666766654
No 97
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=43.62 E-value=36 Score=29.57 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=12.7
Q ss_pred CCCCCCCCCcCCCCCeeEEE
Q 008422 94 DGPSMITQCPITPGNSYTYK 113 (566)
Q Consensus 94 DG~~~vtq~~i~PG~~~~Y~ 113 (566)
+||-| .|.-|.||++|.|.
T Consensus 67 ~GVVG-~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 67 EGVVG-EQPVLAPGESFEYT 85 (127)
T ss_pred Cceec-CCceECCCCCeEEe
Confidence 55544 24568999988774
No 98
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.85 E-value=99 Score=29.84 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=53.2
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.|++.+.+.+ ..|-| +|-+.+. .. .+-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf-------~ip~~~~------------------k~---d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSW-------TVPSLGV------------------KV---DAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccce-------eccccCc------------------ee---ECCCCcceeEEEEe
Confidence 46788999999999999754 45554 4433211 12 33467778889999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEEec
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
+.||.+...|.-+-.. +..|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 9999999999987755 456666666654
No 99
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=42.76 E-value=54 Score=31.41 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=43.2
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+++||++..... . |.|.| |.-.-....-||..-.+-++++ .+|.|...|.-+.
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--i-------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--M-------TSFWI---------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--h-------hhhhc---------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 35778888888888776552 2 44444 3333344455899999999988 7899999998653
No 100
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=41.18 E-value=1e+02 Score=32.15 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=44.2
Q ss_pred CeeEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeee
Q 008422 207 QTYTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 286 (566)
Q Consensus 207 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~ 286 (566)
....+++++|+ ++|.+.|.+... +.|+++ +|..+ ....=.|.||.+..+.+.+ .||+|.+.|..
T Consensus 42 ~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~v---v~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~ 105 (375)
T PRK10378 42 EPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMV---VEERENIAPGFSQKMTANL--QPGEYDMTCGL 105 (375)
T ss_pred ccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--ccccc---cccccccCCCCceEEEEec--CCceEEeecCc
Confidence 45678999996 899999998543 234444 22221 0112389999888887776 48999999954
No 101
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.43 E-value=94 Score=30.00 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=42.4
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
-.+.+..|+++|+++.+... .|.|.+.+.. -.+..-||..-.+.+.++ .+|.|...|.-+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~----------------~k~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--IHSWTVPSLG----------------VKVDAVPGRLNQIGFTIT-RPGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--cccccccccC----------------cceecCCCceEEEEEEeC-CCEEEEEEChhhc
Confidence 35788999999999988542 3333443322 123345888888888888 7899999998653
No 102
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=38.57 E-value=1.1e+02 Score=26.29 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=42.9
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcE----EeeEEEECCCceEEEEEeeCC--CCceeEEE
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPY----VTDVVVIAPGQTTDVLLKADQ--PVGSYYMA 283 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~----~~d~~~l~pgeR~dv~v~~~~--~~G~y~~~ 283 (566)
.-.+..|+.+++++-=........+. -.+.+...+|..+--. ....+....++++.+.++++. .+|.|.+.
T Consensus 28 ~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~ 104 (142)
T PF14524_consen 28 TSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSIS 104 (142)
T ss_dssp -SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEE
T ss_pred eeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEE
Confidence 33578899998888766544443333 2355666777655211 123455555899999888875 68999998
Q ss_pred eee
Q 008422 284 ARA 286 (566)
Q Consensus 284 ~~~ 286 (566)
...
T Consensus 105 v~l 107 (142)
T PF14524_consen 105 VGL 107 (142)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 103
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=37.79 E-value=1.4e+02 Score=27.15 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=40.1
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeeccc
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 289 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~~ 289 (566)
.+.+..|..+||++..+.. .|.|.+..... .+..-||..-.+.+.+. .+|.|...|.-+-.
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgv----------------K~DavPGr~n~l~~~~~-~~G~y~gqCsElCG 134 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV--IHSWSVPSLGI----------------KADAIPGRLHKINTFIL-REGVFYGQCSEMCG 134 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc--ceeeeccccCc----------------eeeccCCceEEEEEecC-CCeEEEEEcchhcC
Confidence 4678889988887765542 34444443322 22334777777777777 78999999986543
No 104
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=37.68 E-value=1.8e+02 Score=24.92 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=37.6
Q ss_pred EEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCc-CcEEeeEEEECCCceEEEEEeeCC
Q 008422 211 LKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYT-EPYVTDVVVIAPGQTTDVLLKADQ 275 (566)
Q Consensus 211 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-~p~~~d~~~l~pgeR~dv~v~~~~ 275 (566)
+++.....|+|.+...+ ...+.|+|.. |+..++..- .+.....+.|..|++|.|.|...+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 45554455889885433 4567888764 454444322 233445788888888888887754
No 105
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=37.45 E-value=2.3e+02 Score=32.17 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=43.5
Q ss_pred CCCeEEEec---CCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeec
Q 008422 54 PGPTIRVHE---GDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAH 128 (566)
Q Consensus 54 pGP~i~~~~---Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H 128 (566)
+.|.++++. ...|+|+|.|.......+|..-.... ++.| -+..|++|++.+..|.+ ...+ -||---
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y~-----~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLt 660 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAYG-----GAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFT 660 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCCC-----CCCC--EEEEECCCCEEEEEEec-cCCC-CceEEE
Confidence 447777654 45799999999988888887633211 1212 12568999999999976 3333 577544
No 106
>PRK13202 ureB urease subunit beta; Reviewed
Probab=36.64 E-value=1.1e+02 Score=25.47 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=38.8
Q ss_pred eEEEecC--CEEEEEEEeCCCCce--eEEEeCccccCCCCCC-----C----CCCCCCCcCCCCCeeEEEEE
Q 008422 57 TIRVHEG--DTLIVHVFNKSPYNL--TIHWHGIFQLLSAWAD-----G----PSMITQCPITPGNSYTYKFR 115 (566)
Q Consensus 57 ~i~~~~G--d~v~v~v~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~vtq~~i~PG~~~~Y~f~ 115 (566)
.|++++| +++.|+|+|..+++. .-|+|=.+....--.| | .|.-|-.-..||++.+.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4899999 699999999997765 4577766644322122 1 22223345678888877653
No 107
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.99 E-value=1.1e+02 Score=29.62 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=40.8
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
.+.+..|+++||++.-... .|.|.+.... -.+..-||..-.+.+.++ .+|.|...|.-+-
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg----------------~k~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDV--LHSWAVPSLG----------------LKTDAIPGRLNQTTLMST-RPGLYYGQCSEIC 200 (227)
T ss_pred eEEecCCCEEEEEEEECcc--cccccccccc----------------cceecCCCceEEEEEecC-CcEEEEEECcccc
Confidence 5778899999988766542 2333333222 223344888888888887 7899999998653
No 108
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.80 E-value=99 Score=29.91 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=41.8
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
-.+.+..|+++|+++.-... . |.|.+-+ ..-.+..-||.+-.+.+.++ .+|.|...|.-+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~ip~---------~~~k~da~PG~~~~~~~~~~-~~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--L-------HSWAVPA---------LGVKMDAVPGRLNQTAFIAS-RPGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--c-------cceeccc---------cCCccccCCCceEEEEEEeC-CceEEEEEChhhc
Confidence 35788999999888766542 2 4444422 11223445889988988888 7899999998653
No 109
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=35.02 E-value=2.4e+02 Score=22.77 Aligned_cols=59 Identities=27% Similarity=0.492 Sum_probs=36.8
Q ss_pred EEECCcEE--EEEEEecccCceEEEEEc--C---CeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeC-C-CCceeEE
Q 008422 212 KVETGKTY--LLRIINAALNNQLFFKIA--N---HNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKAD-Q-PVGSYYM 282 (566)
Q Consensus 212 ~v~~G~~~--rlRliN~~~~~~~~~~l~--g---h~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~-~-~~G~y~~ 282 (566)
.+..|++| .+.|.|.|... .+|++. . ..|.+ +| ..-.|+||+..++.|.+. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 45567766 48999999554 334443 2 12222 12 234699999999999887 3 4576643
No 110
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=34.88 E-value=2.1e+02 Score=29.49 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=14.4
Q ss_pred CCcCCCCCeeEEEEEe
Q 008422 101 QCPITPGNSYTYKFRI 116 (566)
Q Consensus 101 q~~i~PG~~~~Y~f~~ 116 (566)
+.||.|||+.+.+.++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999987
No 111
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.86 E-value=3.1e+02 Score=25.70 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=52.2
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
+.+.++.|+.+++.+...+ ..|.|.+-.... .+|. -||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~D----ViHsf~vp~l~~-------------------------k~d~---~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD----VIHSFSVPDLNL-------------------------KMDA---IPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecCc----cccceeccccCc-------------------------eeec---CCCceEEEEEEcC
Confidence 5678899999999998643 566665543211 2333 3778888999999
Q ss_pred CceeEEEEeeccccc-ccccEEEEEEec
Q 008422 522 NPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 522 npG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
.||.+-.-|.-.-=. +..|-..++|.+
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 999999999876533 355656666643
No 112
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=34.52 E-value=85 Score=31.91 Aligned_cols=63 Identities=14% Similarity=0.295 Sum_probs=45.8
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+.+||++...... |.|.| |...-.+..-||.+-.+.+.++ .+|.|...|.-+.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcC-CCEEEEEEChhhc
Confidence 357899999999998877632 44444 3334445556888888888888 7899999999764
Q ss_pred cC
Q 008422 289 SA 290 (566)
Q Consensus 289 ~~ 290 (566)
..
T Consensus 212 G~ 213 (315)
T PRK10525 212 GP 213 (315)
T ss_pred Cc
Confidence 43
No 113
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.92 E-value=1.4e+02 Score=28.88 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=41.8
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+.+|+++..+.. .|.|.+.+.. -.+..-||..-.+.+.++ .+|.|...|.-+-
T Consensus 144 n~lvlP~~~~v~~~itS~DV--iHsf~vp~lg----------------~k~daiPG~~~~~~~~~~-~~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV--LHSFAVPSLS----------------VKIDAVPGRLNQTSFFIK-RPGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCch--hccccccccC----------------ceeEccCCceEeEEEEeC-CCEEEEEEChhhc
Confidence 35789999999999887642 3333333222 123344788888888887 7899999988653
No 114
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.52 E-value=3e+02 Score=25.78 Aligned_cols=75 Identities=9% Similarity=-0.033 Sum_probs=47.6
Q ss_pred eEEEecCCEEEEEEEeCCCCceeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEEEEEeCCCCcceeEeecchhhc-c-
Q 008422 57 TIRVHEGDTLIVHVFNKSPYNLTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTYKFRIVNQEGTLWWHAHFSMLR-A- 134 (566)
Q Consensus 57 ~i~~~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~- 134 (566)
.+.+..|..|+++++=.. .-++....++. +.+. .-||..-...|++ +++|+|.-.|..-.-. .
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf~vp~l~------------~k~d-~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSFSVPDLN------------LKMD-AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccceeccccC------------ceee-cCCCceEEEEEEc-CCCEEEEEEeehhhCcCcc
Confidence 477888888888877653 22232222221 1122 3478888888886 9999998888753322 2
Q ss_pred cceeEEEEeCCC
Q 008422 135 TVHGALIIRPRS 146 (566)
Q Consensus 135 Gl~G~liV~~~~ 146 (566)
.|.+.+.|.+++
T Consensus 182 ~M~~~v~v~~~~ 193 (194)
T MTH00047 182 YMPIVIEVVDVD 193 (194)
T ss_pred cCcEEEEEEcCC
Confidence 677777777654
No 115
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.80 E-value=1.7e+02 Score=28.37 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=41.2
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+.+|+++.-... .|.|.+.+.. -.+..-||..-.+.+.++ .+|.|...|.-+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg----------------~k~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--LHSWTVPALG----------------VKMDAVPGRLNQATFIIS-RPGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--cccccccccC----------------ceeEecCCceEEEEEEeC-CcEEEEEEchhhc
Confidence 46788999999888765542 3333443322 223345788888888887 7899999998653
No 116
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.84 E-value=2.2e+02 Score=25.71 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=17.4
Q ss_pred CCCCCcCCCCCeeEEEEEeCCCCcce
Q 008422 98 MITQCPITPGNSYTYKFRIVNQEGTL 123 (566)
Q Consensus 98 ~vtq~~i~PG~~~~Y~f~~~~~~Gt~ 123 (566)
.+...-+.|||+.+++-++ +..-+|
T Consensus 88 ~~~e~~L~Pge~k~l~~~l-~e~t~~ 112 (159)
T COG3521 88 DVDEYILLPGETKTLSRTL-DEQTRA 112 (159)
T ss_pred cceeEEEcCCceEEecCCc-ccccee
Confidence 3445678999999998886 443343
No 117
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=28.79 E-value=2.9e+02 Score=24.49 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=39.6
Q ss_pred cEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEE-------eeEEEECCCceE-EEEEeeC
Q 008422 217 KTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYV-------TDVVVIAPGQTT-DVLLKAD 274 (566)
Q Consensus 217 ~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~-------~d~~~l~pgeR~-dv~v~~~ 274 (566)
.+|-|.+-|.|... +.++...++|+ +||..+.|.. .+++.|.|||-- ++.+.-.
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~ 131 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA 131 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC
Confidence 46889999999543 46788888887 7998886533 257889999987 5555543
No 118
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=28.26 E-value=2.9e+02 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=14.0
Q ss_pred EECCcEEEEEEEecccCceEEEEE
Q 008422 213 VETGKTYLLRIINAALNNQLFFKI 236 (566)
Q Consensus 213 v~~G~~~rlRliN~~~~~~~~~~l 236 (566)
.+.||+++|++-.--....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 467888888877644333333444
No 119
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=27.96 E-value=87 Score=22.01 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.5
Q ss_pred CCCCcceeEE-eCCCcEEEEEEEecCceeEEEEeeccccccc
Q 008422 498 VNPQRRNTIA-VPVGGWAVIRFRANNPGVWFMHCHLDVHLPW 538 (566)
Q Consensus 498 ~~p~~rDTv~-vp~~g~~virf~adnpG~w~~HCHil~H~~~ 538 (566)
..|..+-+.. .+.|....++++-.....+=+||..+-|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3444444333 4567888888888888999999999999764
No 120
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=27.87 E-value=1.2e+02 Score=28.89 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=51.3
Q ss_pred eEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEec
Q 008422 442 SVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRAN 521 (566)
Q Consensus 442 ~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad 521 (566)
+.+.++.|..|++.+...+ ..| +|+|-..+ ..+|.+ ||-...+.|+++
T Consensus 130 n~l~iP~g~~v~~~ltS~D----ViH-------sf~vP~l~------------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TMT-------SFWIPQLG------------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hhh-------hhhchhhC------------------ceeecC---CCceEEEEEEeC
Confidence 5578899999999998643 334 45554332 135554 678888999999
Q ss_pred CceeEEEEeeccccc-ccccEEEEEEec
Q 008422 522 NPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 522 npG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
.||.|--.|=-.-=. +.-|...++|.+
T Consensus 178 ~~G~y~g~Cae~CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 178 QVGTYRGRNANFNGEGFADQTFDVNAVS 205 (217)
T ss_pred CCEEEEEEehhhcCccccCCeEEEEEeC
Confidence 999999999654322 345666666554
No 121
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=27.77 E-value=44 Score=27.56 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=25.1
Q ss_pred EEECCCCCCCeEEEecCCEEEEEEEeCCC
Q 008422 47 TAVNGSLPGPTIRVHEGDTLIVHVFNKSP 75 (566)
Q Consensus 47 ~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~ 75 (566)
..+||+.-=|.=.|+.||.|+|++.|..-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 46899887789999999999999999753
No 122
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=27.31 E-value=3.9e+02 Score=24.29 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=49.5
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|..+++.+...+ ..|.|.+-..-. ..|. -||-...+.|.+
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~D----VIHSF~VP~lgv-------------------------K~Da---vPGr~n~l~~~~ 119 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITATD----VIHSWSVPSLGI-------------------------KADA---IPGRLHKINTFI 119 (162)
T ss_pred cCCEEEeCCCEEEEEEEeCc----cceeeeccccCc-------------------------eeec---cCCceEEEEEec
Confidence 35677899999999988643 456655542211 2333 366667788999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEEe
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVVE 547 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V~ 547 (566)
+.||.+...|.-+-=. +..|-..++|.
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~vv 147 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVEAV 147 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEEEe
Confidence 9999999999866522 23455555554
No 123
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=26.66 E-value=3.6e+02 Score=25.86 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=62.3
Q ss_pred ccCceeEEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCc-----eeEEEeCccccCCCCCCCCCCCCCCcCCCCCeeEE
Q 008422 38 GRLCRQQTITAVNGSLPGPTIRVHEGDTLIVHVFNKSPYN-----LTIHWHGIFQLLSAWADGPSMITQCPITPGNSYTY 112 (566)
Q Consensus 38 ~~~g~~~~~~~~NG~~pGP~i~~~~Gd~v~v~v~N~l~~~-----~~iH~HG~~~~~~~~~DG~~~vtq~~i~PG~~~~Y 112 (566)
+++|..--.+++.|.+---.|.|..|..+++++.=+.+.+ .+-.||+.. .++-+|-...
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ssI 142 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSSI 142 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeEE
Confidence 3444444444555555436999999999999999886533 233333331 2556788899
Q ss_pred EEEeCCCCcceeEeecchhhcccceeEEEEeCCCCC
Q 008422 113 KFRIVNQEGTLWWHAHFSMLRATVHGALIIRPRSGH 148 (566)
Q Consensus 113 ~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~ 148 (566)
+|+- .+.|+|-+-|.....+ |.+.|++..+.
T Consensus 143 e~T~-~s~ge~af~cgmnm~~----G~~~vet~~~~ 173 (272)
T COG4633 143 EFTP-ISKGEYAFLCGMNMFR----GNIQVETLTGK 173 (272)
T ss_pred Eecc-ccccchhhhcchhhcc----CeeEEEecCCc
Confidence 9985 9999998888876666 99999877643
No 124
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.35 E-value=2.1e+02 Score=23.70 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=38.3
Q ss_pred eEEEecC-CEEEEEEEeCCCCce--eEEEeCccccCCCCCC-----C----CCCCCCCcCCCCCeeEEEEE
Q 008422 57 TIRVHEG-DTLIVHVFNKSPYNL--TIHWHGIFQLLSAWAD-----G----PSMITQCPITPGNSYTYKFR 115 (566)
Q Consensus 57 ~i~~~~G-d~v~v~v~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~vtq~~i~PG~~~~Y~f~ 115 (566)
.|++++| +++.|.|+|..+++. .-|+|=.+....-..| | .|.-|-.-..||++.+-+.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 789999999997765 4588766644322222 1 22223345678888877653
No 125
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.92 E-value=3.8e+02 Score=25.81 Aligned_cols=75 Identities=11% Similarity=0.198 Sum_probs=51.4
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.+++.+...+ .. |.|+|-+.|. ..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~lg~------------------k~da---iPG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSED----VL-------HSWAVPSLGL------------------KTDA---IPGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEECc----cc-------cccccccccc------------------ceec---CCCceEEEEEec
Confidence 36788999999999998653 34 4455544321 2333 367777889999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEEe
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVVE 547 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V~ 547 (566)
+.||.+..-|.-.-.. +.-|-..++|.
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~ 214 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELV 214 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEe
Confidence 9999999999876644 34555555554
No 126
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=25.84 E-value=3.4e+02 Score=21.54 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=37.2
Q ss_pred cEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeee
Q 008422 217 KTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 286 (566)
Q Consensus 217 ~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~ 286 (566)
..++|.|.|.|.... .|.+.. .. + ......++.|.+|++.++.+.....-|-|-+..+.
T Consensus 20 g~l~l~l~N~g~~~~-~~~v~~-------~~--y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~~ 78 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAV-TFTVYD-------NA--Y-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVTG 78 (89)
T ss_pred CEEEEEEEeCCCCcE-EEEEEe-------CC--c-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEEc
Confidence 468999999985443 233332 11 1 11224778889999998888875455677666553
No 127
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.65 E-value=2.3e+02 Score=27.34 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=41.5
Q ss_pred eEEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 209 YTLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 209 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
..+.+..|+++|+++..+.. .|.|.+.... -....-||..-.+.++++ .+|.|...|.-+-
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~----------------~k~davPG~~~~~~~~~~-~~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV--IHSWTVPSLG----------------VKVDAVPGRLNQLNFLIN-RPGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCch--hhheeccccC----------------CeeecCCCceEEEEEEEc-CceEEEEEeechh
Confidence 36789999999988765542 3334443321 222334788888888888 7899999998654
No 128
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.40 E-value=2.5e+02 Score=27.07 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=40.9
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
.+.+..|+.+|+++..+.. . |.|.| |.-.-.+..-||..-.+.+.++ .+|.|...|.-+-
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--i-------Hsf~v---------P~lg~K~DavPG~~n~~~~~~~-~~G~y~g~CsE~C 200 (227)
T MTH00117 141 RMVIPMESPIRILITAEDV--L-------HSWAV---------PSLGVKTDAVPGRLNQTSFITT-RPGVFYGQCSEIC 200 (227)
T ss_pred eEEEecCceEEEEEEecch--h-------hcccc---------cccCceeEecCCceEEEEEEEc-ccceEEEEecccc
Confidence 5788899999888766542 2 44443 2222223344888888888887 7899999998653
No 129
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.36 E-value=2.2e+02 Score=23.62 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=38.1
Q ss_pred eEEEecC-CEEEEEEEeCCCCce--eEEEeCccccCCCCCC-----C----CCCCCCCcCCCCCeeEEEEE
Q 008422 57 TIRVHEG-DTLIVHVFNKSPYNL--TIHWHGIFQLLSAWAD-----G----PSMITQCPITPGNSYTYKFR 115 (566)
Q Consensus 57 ~i~~~~G-d~v~v~v~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~vtq~~i~PG~~~~Y~f~ 115 (566)
.|++++| +++.|+|+|..+++. .-|+|=.+....-..| | .|.-|-.-..||++.+-+.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 799999999997765 4588766544322122 1 22223345678888876653
No 130
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.17 E-value=3.6e+02 Score=26.06 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=51.9
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.+++.+...+ .. |.|+|-+.|. ..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~da---~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMDA---VPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------cccc---CCCceEEEEEEe
Confidence 46678999999999998653 23 5667655431 2333 367778888999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEEe
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVVE 547 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V~ 547 (566)
+.||.+...|.-+--. +..|-..++|.
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv 214 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAV 214 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEE
Confidence 9999999999875433 35555555554
No 131
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.63 E-value=57 Score=26.77 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=8.1
Q ss_pred CchhHHHHHH----HHHHHHhcc
Q 008422 1 MAHSTLLLAC----ALVVLASST 19 (566)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~~~ 19 (566)
|+ |+.+||+ +++||+|+.
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhh
Confidence 55 5544333 333444443
No 132
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=24.50 E-value=1.7e+02 Score=24.74 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=27.4
Q ss_pred EEEEEEEecccCc-eEEEEEcCC-eEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeC
Q 008422 218 TYLLRIINAALNN-QLFFKIANH-NFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKAD 274 (566)
Q Consensus 218 ~~rlRliN~~~~~-~~~~~l~gh-~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~ 274 (566)
.|+++|+|.+... .+.+.+.|. .+++. ...+.+.|.+|+..++-+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 4899999999765 456777663 22221 124788999999888765543
No 133
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=24.25 E-value=2.1e+02 Score=21.42 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=28.2
Q ss_pred EEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcC--cEEeeEEEECCCceE
Q 008422 211 LKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTE--PYVTDVVVIAPGQTT 267 (566)
Q Consensus 211 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~--p~~~d~~~l~pgeR~ 267 (566)
+++.+|+..+||..... .+.+.+-..++.. +|..-. =...+++.|..|+|+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~~~D~~L~~G~~l~l~~g~~v 54 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGDPDDYWLQAGDSLRLRRGGRV 54 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCCCCCEEECCCCEEEeCCCCEE
Confidence 46678888888855443 2667667777754 442110 011355555555553
No 134
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=23.80 E-value=1.5e+02 Score=23.51 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=34.8
Q ss_pred EEEecCCEEEEEEEeCCCCceeEEEeC----ccccCCCCC-CCCCCCCCCcCCCCCeeEEEEEeCCCCcce
Q 008422 58 IRVHEGDTLIVHVFNKSPYNLTIHWHG----IFQLLSAWA-DGPSMITQCPITPGNSYTYKFRIVNQEGTL 123 (566)
Q Consensus 58 i~~~~Gd~v~v~v~N~l~~~~~iH~HG----~~~~~~~~~-DG~~~vtq~~i~PG~~~~Y~f~~~~~~Gt~ 123 (566)
|.++.||++.|.|.-+......-+... +......+. +..+ ...+.-|....+.|++ ..+|+.
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~~~~~~~---~~~vG~~g~~~f~f~a-~~~G~~ 67 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEYIPDNSP---SGLVGAPGTRTFTFKA-LKPGTT 67 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEEEESSTS---STSSTSSEEEEEEEEE-SSSEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcEEeCCCC---cCCCCCCcEEEEEEEE-ecCeeE
Confidence 689999999999998765444444443 111000000 1010 0135556777888888 777764
No 135
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.50 E-value=2.5e+02 Score=27.08 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=40.3
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEeeecc
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~~~~ 288 (566)
.+.+..|+.+||++.-.. -.|.|.+.+..+ + +..-||..-.+.+.++ .+|.|...|.-+-
T Consensus 141 ~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~-------------k---~da~PG~~n~~~~~~~-~~G~~~g~C~e~C 200 (228)
T MTH00076 141 RMVVPMESPIRMLITAED--VLHSWAVPSLGI-------------K---TDAIPGRLNQTSFIAS-RPGVYYGQCSEIC 200 (228)
T ss_pred eEEEecCCEEEEEEEecc--ccccccccccCc-------------e---EEccCCcceeEEEEeC-CcEEEEEEChhhc
Confidence 678899999998887654 233344443222 2 2334787778888777 7899999988653
No 136
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=23.43 E-value=2e+02 Score=24.88 Aligned_cols=52 Identities=15% Similarity=0.308 Sum_probs=39.5
Q ss_pred EEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCC
Q 008422 220 LLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQ 275 (566)
Q Consensus 220 rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~ 275 (566)
.|-+-|.+....+.+ .+..-...||.+++.+..+-+.|.|-+..+++|+-++
T Consensus 28 tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D 79 (125)
T PF11322_consen 28 TLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESD 79 (125)
T ss_pred EEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEeccc
Confidence 455667765554422 2455677899999989999999999999999998764
No 137
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=22.87 E-value=2.8e+02 Score=22.99 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=37.6
Q ss_pred eEEEecC-CEEEEEEEeCCCCce--eEEEeCccccCCCCCC-----C----CCCCCCCcCCCCCeeEEEEE
Q 008422 57 TIRVHEG-DTLIVHVFNKSPYNL--TIHWHGIFQLLSAWAD-----G----PSMITQCPITPGNSYTYKFR 115 (566)
Q Consensus 57 ~i~~~~G-d~v~v~v~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~vtq~~i~PG~~~~Y~f~ 115 (566)
.|++++| ++++|+|+|..+++. .-|+|=.+....--.| | .|.-|-.-..||++.+-+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 4778888 689999999997765 4588866654332222 1 22223345678887776653
No 138
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=22.85 E-value=3e+02 Score=23.55 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=32.1
Q ss_pred eEEEecCCEEEEEEEeCCC-----CceeEEE--eCccccCCC-CCCCCCCC-CCCcCCCCCeeEEEEEe
Q 008422 57 TIRVHEGDTLIVHVFNKSP-----YNLTIHW--HGIFQLLSA-WADGPSMI-TQCPITPGNSYTYKFRI 116 (566)
Q Consensus 57 ~i~~~~Gd~v~v~v~N~l~-----~~~~iH~--HG~~~~~~~-~~DG~~~v-tq~~i~PG~~~~Y~f~~ 116 (566)
.=.+++|+.+.+.+.=..+ -.+.+|+ -|+..+-.. ..|+=... ..|||.+|+.++|.+.+
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 3455677766665542221 1223333 244332111 12442111 46999999999999976
No 139
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.04 E-value=1e+02 Score=27.37 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred EeCCCcEEEEEEEe-cCc---eeEEEEeeccc
Q 008422 507 AVPVGGWAVIRFRA-NNP---GVWFMHCHLDV 534 (566)
Q Consensus 507 ~vp~~g~~virf~a-dnp---G~w~~HCHil~ 534 (566)
.||||..+.|.++. .|| |.|.|+|=...
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 46789999999964 576 99999996543
No 140
>COG3241 Azurin [Energy production and conversion]
Probab=21.68 E-value=1.2e+02 Score=25.99 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=29.8
Q ss_pred cCCCcCc----EEeeEEEECCCceEEEEEeeCC-CCc-eeEEEeee
Q 008422 247 DACYTEP----YVTDVVVIAPGQTTDVLLKADQ-PVG-SYYMAARA 286 (566)
Q Consensus 247 DG~~~~p----~~~d~~~l~pgeR~dv~v~~~~-~~G-~y~~~~~~ 286 (566)
|-.|++| +...+-.|+.|||-++-++..+ ..| .|.+-|..
T Consensus 91 d~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCtF 136 (151)
T COG3241 91 DTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCTF 136 (151)
T ss_pred ccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEec
Confidence 4466754 4457889999999999998764 335 79988874
No 141
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.39 E-value=3.1e+02 Score=26.71 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEECCcEEEEEEEecccCceEEEEEcCCeEEEEEecCCCcCcEEeeEEEECCCceEEEEEeeCCCCceeEEEee
Q 008422 210 TLKVETGKTYLLRIINAALNNQLFFKIANHNFTVVAIDACYTEPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAAR 285 (566)
Q Consensus 210 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~G~y~~~~~ 285 (566)
.+.+..|+++||++.... .. |.|.| |.-.-.+..-||..-.+.+.++ .+|.|...|.
T Consensus 152 ~lvlP~~~~v~~~~tS~D---Vi------Hsf~i---------P~lgvK~DaiPG~~n~~~~~~~-~~G~y~g~C~ 208 (240)
T MTH00023 152 RLVVPINTHVRILVTGAD---VL------HSFAV---------PSLGLKIDAVPGRLNQTGFFIK-RPGVFYGQCS 208 (240)
T ss_pred eEEEecCCEEEEEEEcCC---cc------cceee---------cccCceeecCCCcceeEEEEcC-CCEEEEEEch
No 142
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.03 E-value=2.9e+02 Score=26.61 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=50.9
Q ss_pred cceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEE
Q 008422 440 RTSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFR 519 (566)
Q Consensus 440 ~~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ 519 (566)
..+.+.++.|..+++.+...+ ..|.| +|-+.+ ..+|.+ ||-...+.|.
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D----ViHsf-------~vP~l~------------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAAD----VLHSW-------TVPSLG------------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred cCceEEEecCCEEEEEEecCc----cccce-------eccccC------------------ccccCC---CCcEEEEEEE
Confidence 346788999999999998643 45554 443332 134554 5677778999
Q ss_pred ecCceeEEEEeeccccc-ccccEEEEEEe
Q 008422 520 ANNPGVWFMHCHLDVHL-PWGLATAFVVE 547 (566)
Q Consensus 520 adnpG~w~~HCHil~H~-~~GM~~~~~V~ 547 (566)
++.||.+.--|--+-=. +.-|-..++|.
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M~~~v~vv 214 (226)
T MTH00139 186 INRPGVFYGQCSEICGANHSFMPIVVEAI 214 (226)
T ss_pred cCCCEEEEEEChhhcCcCcCCCeEEEEEe
Confidence 99999999999765533 23455555544
No 143
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.96 E-value=4.2e+02 Score=25.53 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=51.6
Q ss_pred ceEEEccCCCEEEEEEEeCCccCCCCCceeeeCCcEEEEEeCCCCCCcccccccccCCCCCcceeEEeCCCcEEEEEEEe
Q 008422 441 TSVKPLKFNSTVEMILQNTALVVLENHPMHVHGFDFHVLAQGFGNFDAARDRQKFNLVNPQRRNTIAVPVGGWAVIRFRA 520 (566)
Q Consensus 441 ~~~~~~~~g~~v~~v~~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 520 (566)
.+.+.++.|+.+++.+.+.+ ..|.| +|-+.|. ..|. -||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf-------~vP~~~~------------------k~da---iPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD----VIHSW-------TVPSLGV------------------KVDA---VPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeCC----ccccc-------cccccCc------------------ceec---CCCceEEEEEEe
Confidence 46788999999999999754 45544 4433221 1232 367777788999
Q ss_pred cCceeEEEEeeccccc-ccccEEEEEEec
Q 008422 521 NNPGVWFMHCHLDVHL-PWGLATAFVVEN 548 (566)
Q Consensus 521 dnpG~w~~HCHil~H~-~~GM~~~~~V~~ 548 (566)
+.||.+.--|.-+=.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999999876654 355555555543
No 144
>PF15240 Pro-rich: Proline-rich
Probab=20.27 E-value=67 Score=29.55 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhcc
Q 008422 5 TLLLACALVVLASST 19 (566)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (566)
.|+||.+++|++|||
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 455555555556665
No 145
>PRK13792 lysozyme inhibitor; Provisional
Probab=20.11 E-value=5.8e+02 Score=22.16 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHHHhccccCCceEEEEEEE
Q 008422 1 MAHSTLLLACALVVLASSTLASAAIVEHTFHV 32 (566)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 32 (566)
|-++ |+++++.+.++.+++.......+.+.+
T Consensus 1 mk~~-l~~ll~~~~~lLsaCs~~~~~~~~~~~ 31 (127)
T PRK13792 1 MKKA-LWLLLAAVPVVLVACGGSDDDKQTAQV 31 (127)
T ss_pred ChhH-HHHHHHHHHhheecccCCCCCcccccc
Confidence 4455 444444444344455444444443333
Done!