BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008423
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APT|A Chain A, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APT|B Chain B, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|A Chain A, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|B Chain B, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|C Chain C, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|D Chain D, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|E Chain E, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|F Chain F, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|G Chain G, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
pdb|3APY|H Chain H, Properties And Crystal Structure Of
Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
Length = 310
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 137/250 (54%), Gaps = 10/250 (4%)
Query: 25 WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
+GA GST + ++ A R+Q ++ + + HLT +++ L +G++N+LALRG
Sbjct: 50 YGAMGSTRERSVAWAQRIQ-SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRG 108
Query: 85 DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
DPP G+ F GF A +LV IR YGD + A YPEGHP++ ES
Sbjct: 109 DPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPES---------ESL 159
Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
++DL + K KV+AG D ITQLF++ + F+ R+ GI PI+PGIMP+ +Y+ R
Sbjct: 160 EADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRR 219
Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
T C IP + A LE +D+ +AV G+ ++L G++ +H YTLN +
Sbjct: 220 FTEVCGASIPGPLLAKLERHQDDPKAVLEIGVEHAVRQVAELLEAGVEGVHFYTLNKSPA 279
Query: 265 ALAILLNLGL 274
+L LGL
Sbjct: 280 TRMVLERLGL 289
>pdb|1V93|A Chain A, 5,10-Methylenetetrahydrofolate Reductase From Thermus
Thermophilus Hb8
Length = 296
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 137/250 (54%), Gaps = 10/250 (4%)
Query: 25 WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
+GA GST + ++ A R+Q ++ + + HLT +++ L +G++N+LALRG
Sbjct: 50 YGAMGSTRERSVAWAQRIQ-SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRG 108
Query: 85 DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
DPP G+ F GF A +LV IR YGD + A YPEGHP++ ES
Sbjct: 109 DPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPES---------ESL 159
Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
++DL + K KV+AG D ITQLF++ + F+ R+ GI PI+PGIMP+ +Y+ R
Sbjct: 160 EADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRR 219
Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
T C IP + A LE +D+ +AV G+ ++L G++ +H YTLN +
Sbjct: 220 FTEVCGASIPGPLLAKLERHQDDPKAVLEIGVEHAVRQVAELLEAGVEGVHFYTLNKSPA 279
Query: 265 ALAILLNLGL 274
+L LGL
Sbjct: 280 TRMVLERLGL 289
>pdb|3FST|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
Length = 304
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 23/277 (8%)
Query: 4 RTCSSGWTAWWPTTRHSA------TSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT 57
RT T W R S+ + +GA D T I +++ +E HLTC
Sbjct: 33 RTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCI 92
Query: 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117
+ +++ + +NGI++++ALRGD P G K A DLV ++
Sbjct: 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK------PEMYASDLVTLLKEVAD-- 144
Query: 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 177
F I+VA YPE HP+ +S Q+DLL LK+KVDAGA+ ITQ F+D + +L+F
Sbjct: 145 FDISVAAYPEVHPEA---------KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFR 195
Query: 178 NDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIH 237
+ C GI I+PGI+P++N+K ++ +IPA + + + D+ E K G +
Sbjct: 196 DRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPAWMAQMFDGLDDDAETRKLVGAN 255
Query: 238 LGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274
+ +M K + G+K H YTLN + + AI LG+
Sbjct: 256 IAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGV 292
>pdb|3FSU|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
Length = 304
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 23/277 (8%)
Query: 4 RTCSSGWTAWWPTTRHSA------TSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT 57
RT T W R S+ + +GA D T I +++ +E HLTC
Sbjct: 33 RTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCI 92
Query: 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117
+ +++ + +NGI++++ALRGD P G K A DLV ++
Sbjct: 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK------PEMYASDLVTLLKEVAD-- 144
Query: 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 177
F I+VA YPE HP+ +S Q+DLL LK+KVDAGA+ ITQ F+D + +L+F
Sbjct: 145 FDISVAAYPEVHPEA---------KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFR 195
Query: 178 NDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIH 237
+ C GI I+PGI+P++N+K ++ +IPA + + + D+ E K G +
Sbjct: 196 DRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPAWMAQMFDGLDDDAETRKLVGAN 255
Query: 238 LGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274
+ +M K + G+K H YTLN + + AI LG+
Sbjct: 256 IAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGV 292
>pdb|1ZP4|A Chain A, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|B Chain B, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|C Chain C, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
Length = 304
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 139/277 (50%), Gaps = 23/277 (8%)
Query: 4 RTCSSGWTAWWPTTRHSA------TSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT 57
RT T W R S+ + +GA D T I +++ +E HLTC
Sbjct: 33 RTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCI 92
Query: 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117
+ +++ + +NGI++++ALRGD P G K A DLV ++
Sbjct: 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK------PEMYASDLVTLLKEVAD-- 144
Query: 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 177
F I+VA YPE HP+ +S Q+DLL LK+KVDAGA+ ITQ F+D + +L+F
Sbjct: 145 FDISVAAYPEVHPEA---------KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFR 195
Query: 178 NDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIH 237
+ C GI I+PGI+P++N+K + +IPA + + + D+ E K G +
Sbjct: 196 DRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGAN 255
Query: 238 LGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274
+ +M K + G+K H YTLN + + AI LG+
Sbjct: 256 IAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGV 292
>pdb|1ZP3|A Chain A, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|B Chain B, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|C Chain C, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZPT|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZRQ|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
Length = 304
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 139/277 (50%), Gaps = 23/277 (8%)
Query: 4 RTCSSGWTAWWPTTRHSA------TSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT 57
RT T W R S+ + +GA D T I +++ +E HLTC
Sbjct: 33 RTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCI 92
Query: 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117
+ +++ + +NGI++++ALRGD P G K A DLV ++
Sbjct: 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK------PEMYASDLVTLLKEVAD-- 144
Query: 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 177
F I+VA YPE HP+ +S Q+DLL LK+KVDAGA+ ITQ F+D + +L+F
Sbjct: 145 FDISVAAYPEVHPEA---------KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFR 195
Query: 178 NDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIH 237
+ C GI I+PGI+P++N+K + +IPA + + + D+ E K G +
Sbjct: 196 DRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGAN 255
Query: 238 LGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274
+ +M K + G+K H YTLN + + AI LG+
Sbjct: 256 IAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGV 292
>pdb|1B5T|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
Length = 275
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 139/277 (50%), Gaps = 23/277 (8%)
Query: 4 RTCSSGWTAWWPTTRHSA------TSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT 57
RT T W R S+ + +GA D T I +++ +E HLTC
Sbjct: 13 RTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCI 72
Query: 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117
+ +++ + +NGI++++ALRGD P G K A DLV ++
Sbjct: 73 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMY------ASDLVTLLKEVAD-- 124
Query: 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 177
F I+VA YPE HP+ +S Q+DLL LK+KVDAGA+ ITQ F+D + +L+F
Sbjct: 125 FDISVAAYPEVHPEA---------KSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFR 175
Query: 178 NDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIH 237
+ C GI I+PGI+P++N+K + +IPA + + + D+ E K G +
Sbjct: 176 DRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGAN 235
Query: 238 LGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274
+ +M K + G+K H YTLN + + AI LG+
Sbjct: 236 IAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGV 272
>pdb|2FMN|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMN|B Chain B, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMN|C Chain C, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMO|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
pdb|2FMO|B Chain B, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
pdb|2FMO|C Chain C, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
Length = 304
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 23/277 (8%)
Query: 4 RTCSSGWTAWWPTTRHSA------TSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT 57
RT T W R S+ + +GA D T I +++ +E HLTC
Sbjct: 33 RTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCI 92
Query: 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117
+ +++ + +NGI++++ALRGD P G K A DLV ++
Sbjct: 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK------PEMYASDLVTLLKEVAD-- 144
Query: 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 177
F I+VA YPE HP+ +S Q+DLL LK+KVDAG + ITQ F+D + +L+F
Sbjct: 145 FDISVAAYPEVHPEA---------KSAQADLLNLKRKVDAGVNRAITQFFFDVESYLRFR 195
Query: 178 NDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIH 237
+ C GI I+PGI+P++N+K + +IPA + + + D+ E K G +
Sbjct: 196 DRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGAN 255
Query: 238 LGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274
+ +M K + G+K H YTLN + + AI LG+
Sbjct: 256 IAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGV 292
>pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
pdb|1W9C|B Chain B, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
Length = 321
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 221 LEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKI 280
L+ + E A +++ ++ + I + T H L M S LA + NL +EE KI
Sbjct: 195 LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNL--VEEGKI 252
Query: 281 SRSL-PWRPPTNVFRVKEDVRPIFWANRP 308
S SL P P N ++E V + + P
Sbjct: 253 STSLNPGNPVNNQIFLQEYVANLLKSAFP 281
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 221 LEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKI 280
L+ + E A +++ ++ + I + T H L M S LA + NL +EE KI
Sbjct: 901 LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNL--VEEGKI 958
Query: 281 SRSL-PWRPPTNVFRVKEDVRPIFWANRP 308
S SL P P N ++E V + + P
Sbjct: 959 STSLNPGNPVNNQIFLQEYVANLLKSAFP 987
>pdb|1F5J|A Chain A, Crystal Structure Of Xynb, A Highly Thermostable Beta-1,4-
Xylanase From Dictyoglomus Thermophilum Rt46b.1, At 1.8
A Resolution
pdb|1F5J|B Chain B, Crystal Structure Of Xynb, A Highly Thermostable Beta-1,4-
Xylanase From Dictyoglomus Thermophilum Rt46b.1, At 1.8
A Resolution
Length = 199
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 462 PFITFMAVNKEGNWK----ANVNQTDVNAVTWGVFPAKEIIQPTVVDPASF 508
P + F V GNW+ ++ Q ++ T+ ++ + QP++V A+F
Sbjct: 87 PLVEFYIVESWGNWRPPGATSLGQVTIDGGTYDIYRTTRVNQPSIVGTATF 137
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 253 TLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYL 312
T+HLY + E+ L +LN+GL E I+ P F V +D+ P F ++ P S L
Sbjct: 210 TIHLYETSKEEYDLEDILNIGLKEVKTIAAHCV-HLPERYFGVLKDI-PFFVSHNPASNL 267
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 253 TLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYL 312
T+HLY + E+ L +LN+GL E I+ P F V +D+ P F ++ P S L
Sbjct: 198 TIHLYETSKEEYDLEDILNIGLKEVKTIAAHCV-HLPERYFGVLKDI-PFFVSHNPASNL 255
>pdb|2ORX|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
pdb|2ORZ|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
Length = 314
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 458 SKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFE 517
S +IT NK ++ N N TDV +GVFP I + + PAS++ FE
Sbjct: 92 SNGEDWITLKEGNKAIIFQGNTNPTDV---VFGVFPKPLITRFVRIKPASWETGISMRFE 148
Query: 518 IW 519
++
Sbjct: 149 VY 150
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 509 KVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVS 548
++WK E F W S +P+ D+ + +++ + YYL S
Sbjct: 335 RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGS 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,361,530
Number of Sequences: 62578
Number of extensions: 811051
Number of successful extensions: 1840
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1791
Number of HSP's gapped (non-prelim): 35
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)