Query 008423
Match_columns 566
No_of_seqs 275 out of 1290
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 11:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0564 5,10-methylenetetrahyd 100.0 3E-207 7E-212 1611.6 47.5 545 10-565 39-588 (590)
2 PLN02540 methylenetetrahydrofo 100.0 2E-199 4E-204 1616.3 60.5 545 9-554 20-565 (565)
3 TIGR00677 fadh2_euk methylenet 100.0 2.8E-67 6.1E-72 537.3 31.3 259 10-277 22-280 (281)
4 TIGR00676 fadh2 5,10-methylene 100.0 9.8E-64 2.1E-68 508.6 30.8 252 10-273 21-272 (272)
5 PRK09432 metF 5,10-methylenete 100.0 5.4E-63 1.2E-67 509.0 29.0 249 10-275 45-293 (296)
6 PF02219 MTHFR: Methylenetetra 100.0 7.3E-63 1.6E-67 505.2 23.4 255 10-273 33-287 (287)
7 cd00537 MTHFR Methylenetetrahy 100.0 9.8E-60 2.1E-64 478.2 29.2 247 17-272 28-274 (274)
8 COG0685 MetF 5,10-methylenetet 100.0 2.7E-55 6E-60 450.9 24.5 245 15-275 43-290 (291)
9 PRK08645 bifunctional homocyst 100.0 3.1E-51 6.6E-56 458.0 29.3 248 11-276 345-607 (612)
10 PF01081 Aldolase: KDPG and KH 97.1 0.0056 1.2E-07 60.6 11.6 104 57-203 15-118 (196)
11 PRK06015 keto-hydroxyglutarate 96.9 0.012 2.6E-07 58.5 12.0 152 56-271 10-164 (201)
12 PRK07114 keto-hydroxyglutarate 96.8 0.022 4.9E-07 57.4 13.1 120 35-202 5-128 (222)
13 TIGR01182 eda Entner-Doudoroff 96.8 0.022 4.8E-07 56.8 12.7 104 56-202 14-117 (204)
14 PRK06552 keto-hydroxyglutarate 96.7 0.023 4.9E-07 57.0 12.2 101 56-199 19-122 (213)
15 COG0159 TrpA Tryptophan syntha 96.6 0.18 3.9E-06 52.3 18.1 178 28-248 74-261 (265)
16 TIGR00262 trpA tryptophan synt 96.5 0.23 5E-06 51.0 18.6 159 28-223 67-236 (256)
17 PRK05718 keto-hydroxyglutarate 95.9 0.081 1.8E-06 53.0 11.5 166 37-271 7-175 (212)
18 PRK09140 2-dehydro-3-deoxy-6-p 95.9 0.22 4.8E-06 49.6 14.3 103 56-203 16-118 (206)
19 PLN02591 tryptophan synthase 95.2 2 4.4E-05 44.2 18.8 178 29-248 60-247 (250)
20 COG0800 Eda 2-keto-3-deoxy-6-p 95.2 0.27 5.8E-06 49.4 11.9 104 49-197 14-117 (211)
21 CHL00200 trpA tryptophan synth 94.9 2.5 5.5E-05 43.8 18.7 178 29-248 73-259 (263)
22 PF00290 Trp_syntA: Tryptophan 94.8 2.7 5.8E-05 43.6 18.5 180 29-249 68-257 (259)
23 cd00945 Aldolase_Class_I Class 94.7 1.9 4.2E-05 40.7 16.2 105 60-198 11-125 (201)
24 COG1060 ThiH Thiamine biosynth 94.0 0.16 3.5E-06 55.0 7.9 119 58-194 89-220 (370)
25 cd04724 Tryptophan_synthase_al 93.4 6.7 0.00015 39.8 18.0 153 34-223 63-224 (242)
26 PRK05481 lipoyl synthase; Prov 93.3 3.3 7.2E-05 43.3 15.9 114 46-183 67-192 (289)
27 PRK13111 trpA tryptophan synth 92.9 8 0.00017 40.0 17.7 172 31-248 72-254 (258)
28 cd00452 KDPG_aldolase KDPG and 92.3 4 8.8E-05 39.7 14.1 104 56-205 10-113 (190)
29 cd02803 OYE_like_FMN_family Ol 92.2 4 8.7E-05 42.7 14.8 142 54-207 126-301 (327)
30 PRK07360 FO synthase subunit 2 91.7 1.4 3E-05 47.6 10.9 124 58-200 90-230 (371)
31 PRK13125 trpA tryptophan synth 91.5 1.7 3.7E-05 44.1 10.8 182 49-256 5-213 (244)
32 PRK05927 hypothetical protein; 91.4 1.1 2.4E-05 48.2 9.6 122 59-200 76-214 (350)
33 cd02930 DCR_FMN 2,4-dienoyl-Co 91.2 12 0.00027 40.0 17.5 158 37-207 81-296 (353)
34 TIGR03551 F420_cofH 7,8-dideme 90.8 1.9 4.1E-05 45.9 10.8 123 58-200 69-208 (343)
35 PRK13111 trpA tryptophan synth 90.5 5.7 0.00012 41.0 13.6 45 146-190 27-93 (258)
36 cd04733 OYE_like_2_FMN Old yel 90.4 7 0.00015 41.5 14.6 140 55-206 135-311 (338)
37 PRK09240 thiH thiamine biosynt 90.3 2.9 6.3E-05 45.2 11.7 98 59-186 104-217 (371)
38 PF00701 DHDPS: Dihydrodipicol 90.2 6.8 0.00015 40.4 14.0 130 59-224 19-154 (289)
39 cd00377 ICL_PEPM Members of th 90.0 24 0.00053 35.9 18.1 157 33-204 55-217 (243)
40 cd04724 Tryptophan_synthase_al 89.8 6.9 0.00015 39.8 13.4 137 50-207 2-150 (242)
41 PRK07094 biotin synthase; Prov 89.5 4.7 0.0001 42.2 12.4 97 60-186 71-180 (323)
42 CHL00200 trpA tryptophan synth 89.5 3.7 8E-05 42.6 11.3 191 48-258 15-232 (263)
43 cd04727 pdxS PdxS is a subunit 89.5 7.1 0.00015 41.0 13.3 148 26-218 44-229 (283)
44 PLN02591 tryptophan synthase 89.1 4.4 9.5E-05 41.8 11.4 187 50-257 4-218 (250)
45 TIGR02351 thiH thiazole biosyn 89.0 6.3 0.00014 42.5 13.1 98 59-186 103-216 (366)
46 PRK12928 lipoyl synthase; Prov 88.6 4.4 9.5E-05 42.5 11.2 109 58-189 86-206 (290)
47 PF11965 DUF3479: Domain of un 87.9 9.6 0.00021 37.1 12.2 73 146-222 46-124 (164)
48 TIGR00510 lipA lipoate synthas 87.9 4.2 9.2E-05 43.0 10.6 56 60-122 92-147 (302)
49 TIGR00423 radical SAM domain p 87.8 2.9 6.3E-05 43.8 9.4 49 58-115 35-83 (309)
50 TIGR03700 mena_SCO4494 putativ 87.7 5 0.00011 42.9 11.2 54 59-122 79-132 (351)
51 TIGR01163 rpe ribulose-phospha 87.6 16 0.00035 35.3 13.9 68 9-81 16-85 (210)
52 TIGR01163 rpe ribulose-phospha 87.6 28 0.00061 33.6 15.6 116 59-205 8-123 (210)
53 cd00953 KDG_aldolase KDG (2-ke 87.0 20 0.00044 37.1 14.9 126 58-222 16-146 (279)
54 TIGR03249 KdgD 5-dehydro-4-deo 86.8 16 0.00035 38.0 14.2 124 59-222 23-152 (296)
55 PTZ00314 inosine-5'-monophosph 86.6 5.7 0.00012 44.8 11.3 98 65-197 243-357 (495)
56 cd00408 DHDPS-like Dihydrodipi 86.5 39 0.00085 34.5 16.6 130 58-223 14-149 (281)
57 TIGR00262 trpA tryptophan synt 86.5 17 0.00036 37.5 13.8 108 146-273 25-164 (256)
58 cd00950 DHDPS Dihydrodipicolin 86.4 30 0.00064 35.6 15.7 128 59-222 18-151 (284)
59 PRK08508 biotin synthase; Prov 86.3 11 0.00024 39.1 12.6 112 59-200 40-166 (279)
60 cd00952 CHBPH_aldolase Trans-o 85.9 26 0.00056 36.9 15.2 131 58-223 25-161 (309)
61 TIGR03128 RuMP_HxlA 3-hexulose 85.8 6.8 0.00015 38.1 10.2 83 102-204 38-121 (206)
62 PRK05904 coproporphyrinogen II 85.2 11 0.00024 40.4 12.3 103 74-203 55-173 (353)
63 cd02810 DHOD_DHPD_FMN Dihydroo 85.0 22 0.00048 36.5 14.0 144 13-177 120-287 (289)
64 COG1856 Uncharacterized homolo 84.9 2.9 6.4E-05 42.7 7.2 153 7-184 100-267 (275)
65 PRK07259 dihydroorotate dehydr 84.9 21 0.00046 37.1 13.9 125 33-181 143-281 (301)
66 cd04740 DHOD_1B_like Dihydroor 84.8 34 0.00074 35.4 15.3 125 33-181 140-278 (296)
67 TIGR00343 pyridoxal 5'-phospha 84.6 14 0.00029 39.1 12.1 96 27-166 47-142 (287)
68 cd02932 OYE_YqiM_FMN Old yello 84.5 28 0.0006 36.9 14.8 140 55-205 140-308 (336)
69 cd06360 PBP1_alkylbenzenes_lik 84.4 14 0.00031 37.7 12.3 100 63-191 121-222 (336)
70 PRK03170 dihydrodipicolinate s 84.4 37 0.00081 35.1 15.4 128 59-222 19-152 (292)
71 PRK08445 hypothetical protein; 84.1 8.9 0.00019 41.2 11.0 114 60-192 74-205 (348)
72 PRK06245 cofG FO synthase subu 84.1 6.4 0.00014 41.6 9.8 32 58-89 40-71 (336)
73 PRK05286 dihydroorotate dehydr 83.8 7.4 0.00016 41.6 10.2 129 33-182 192-338 (344)
74 cd04734 OYE_like_3_FMN Old yel 83.4 17 0.00037 38.9 12.7 137 56-204 128-302 (343)
75 PRK08444 hypothetical protein; 83.3 3.6 7.9E-05 44.3 7.6 54 59-122 80-133 (353)
76 PRK04180 pyridoxal biosynthesi 83.2 15 0.00032 38.9 11.7 147 27-218 54-238 (293)
77 PLN02417 dihydrodipicolinate s 83.1 28 0.00061 36.1 13.8 127 59-223 19-151 (280)
78 PRK09613 thiH thiamine biosynt 82.6 8.4 0.00018 43.2 10.4 90 59-175 115-208 (469)
79 cd00954 NAL N-Acetylneuraminic 82.6 64 0.0014 33.4 16.7 129 59-223 18-154 (288)
80 PRK09234 fbiC FO synthase; Rev 82.2 17 0.00036 43.8 13.2 48 59-115 557-604 (843)
81 cd00951 KDGDH 5-dehydro-4-deox 82.1 46 0.001 34.6 15.0 125 59-223 18-148 (289)
82 PRK15108 biotin synthase; Prov 82.0 11 0.00024 40.5 10.6 111 59-200 76-200 (345)
83 cd03174 DRE_TIM_metallolyase D 81.9 31 0.00066 34.6 13.3 130 7-164 77-221 (265)
84 cd02931 ER_like_FMN Enoate red 81.9 42 0.00092 36.5 15.2 147 57-206 138-324 (382)
85 TIGR02320 PEP_mutase phosphoen 81.9 73 0.0016 33.6 21.8 173 33-218 64-244 (285)
86 TIGR03550 F420_cofG 7,8-dideme 81.6 6.7 0.00015 41.4 8.8 59 57-115 33-98 (322)
87 PLN02826 dihydroorotate dehydr 81.3 27 0.00058 38.7 13.5 114 47-181 262-389 (409)
88 COG2513 PrpB PEP phosphonomuta 81.2 41 0.0009 35.6 14.1 143 32-194 63-210 (289)
89 cd04741 DHOD_1A_like Dihydroor 81.2 40 0.00087 35.2 14.3 130 32-182 142-292 (294)
90 TIGR03821 AblA_like_1 lysine-2 81.2 12 0.00026 39.7 10.5 101 60-186 126-235 (321)
91 cd04726 KGPDC_HPS 3-Keto-L-gul 80.3 45 0.00098 32.1 13.4 119 36-194 41-168 (202)
92 COG2108 Uncharacterized conser 80.3 2.5 5.4E-05 45.2 4.9 169 65-265 68-259 (353)
93 PF00478 IMPDH: IMP dehydrogen 79.6 11 0.00024 40.8 9.6 72 117-207 96-168 (352)
94 PRK04147 N-acetylneuraminate l 79.2 85 0.0018 32.6 15.9 129 60-222 22-155 (293)
95 cd04735 OYE_like_4_FMN Old yel 79.0 49 0.0011 35.5 14.3 139 56-204 131-301 (353)
96 PRK00164 moaA molybdenum cofac 79.0 55 0.0012 34.4 14.5 57 56-124 46-102 (331)
97 TIGR02666 moaA molybdenum cofa 78.9 57 0.0012 34.3 14.6 56 57-125 41-97 (334)
98 cd06332 PBP1_aromatic_compound 78.1 63 0.0014 32.8 14.3 42 146-192 177-220 (333)
99 PRK08446 coproporphyrinogen II 78.1 39 0.00084 36.2 13.2 103 75-204 51-169 (350)
100 cd02933 OYE_like_FMN Old yello 77.9 31 0.00067 36.9 12.4 129 55-191 138-290 (338)
101 TIGR03822 AblA_like_2 lysine-2 77.7 20 0.00043 38.0 10.8 100 60-186 120-229 (321)
102 cd04729 NanE N-acetylmannosami 77.6 55 0.0012 32.4 13.3 107 67-207 84-197 (219)
103 PRK13523 NADPH dehydrogenase N 77.6 62 0.0013 34.7 14.5 141 37-190 85-279 (337)
104 TIGR03699 mena_SCO4550 menaqui 77.4 14 0.0003 39.2 9.5 47 59-114 72-118 (340)
105 PRK10605 N-ethylmaleimide redu 77.2 31 0.00068 37.3 12.3 132 53-191 143-297 (362)
106 PRK08255 salicylyl-CoA 5-hydro 77.2 46 0.001 39.5 14.6 138 55-204 537-704 (765)
107 cd02929 TMADH_HD_FMN Trimethyl 77.1 60 0.0013 35.2 14.4 141 55-205 136-307 (370)
108 PLN02428 lipoic acid synthase 76.3 36 0.00078 36.9 12.3 61 60-128 131-191 (349)
109 PRK14334 (dimethylallyl)adenos 76.1 94 0.002 34.4 15.9 122 58-202 166-306 (440)
110 TIGR00683 nanA N-acetylneurami 76.0 1E+02 0.0023 32.1 19.5 129 59-222 18-153 (290)
111 COG0167 PyrD Dihydroorotate de 76.0 64 0.0014 34.5 13.9 129 34-185 148-297 (310)
112 PRK13125 trpA tryptophan synth 75.6 96 0.0021 31.4 18.4 151 37-222 64-222 (244)
113 cd06338 PBP1_ABC_ligand_bindin 75.6 1E+02 0.0022 31.7 15.6 46 146-196 187-232 (345)
114 PRK09234 fbiC FO synthase; Rev 75.2 11 0.00023 45.4 8.8 57 59-115 102-165 (843)
115 cd07944 DRE_TIM_HOA_like 4-hyd 75.1 1E+02 0.0023 31.8 15.0 125 11-164 89-214 (266)
116 TIGR01579 MiaB-like-C MiaB-lik 75.0 41 0.00089 36.6 12.6 132 47-201 153-306 (414)
117 TIGR00089 RNA modification enz 74.9 1E+02 0.0022 33.8 15.7 111 57-187 166-290 (429)
118 PRK08649 inosine 5-monophospha 74.6 13 0.00029 40.4 8.6 195 33-274 58-277 (368)
119 PRK13361 molybdenum cofactor b 74.2 79 0.0017 33.4 14.2 56 58-125 44-99 (329)
120 PRK14338 (dimethylallyl)adenos 74.2 48 0.001 36.9 13.1 107 57-184 182-303 (459)
121 PRK13398 3-deoxy-7-phosphohept 74.1 73 0.0016 33.2 13.5 123 34-182 122-261 (266)
122 TIGR01302 IMP_dehydrog inosine 74.0 22 0.00047 39.6 10.3 95 66-197 227-340 (450)
123 cd06331 PBP1_AmiC_like Type I 73.6 59 0.0013 33.4 12.9 33 156-190 185-220 (333)
124 cd06346 PBP1_ABC_ligand_bindin 72.8 74 0.0016 32.5 13.3 91 69-192 130-224 (312)
125 TIGR02313 HpaI-NOT-DapA 2,4-di 72.1 1.2E+02 0.0026 31.7 14.7 127 59-221 18-151 (294)
126 PRK05926 hypothetical protein; 71.5 14 0.0003 40.2 7.8 53 59-122 99-151 (370)
127 cd02940 DHPD_FMN Dihydropyrimi 71.4 64 0.0014 33.7 12.6 122 33-177 154-296 (299)
128 PRK08091 ribulose-phosphate 3- 71.3 1.2E+02 0.0026 31.0 14.1 125 47-206 12-138 (228)
129 cd03174 DRE_TIM_metallolyase D 71.2 1.2E+02 0.0025 30.4 15.5 116 53-198 10-140 (265)
130 PRK09722 allulose-6-phosphate 71.2 1.2E+02 0.0026 31.0 14.0 135 11-182 76-217 (229)
131 PRK10425 DNase TatD; Provision 71.2 28 0.00061 35.8 9.7 113 49-191 3-126 (258)
132 TIGR00674 dapA dihydrodipicoli 70.8 1.3E+02 0.0029 31.0 16.1 128 59-222 16-149 (285)
133 TIGR02668 moaA_archaeal probab 70.8 1.2E+02 0.0026 31.4 14.3 45 58-113 39-83 (302)
134 TIGR01949 AroFGH_arch predicte 70.3 1.1E+02 0.0024 31.2 13.8 67 146-218 156-231 (258)
135 TIGR00538 hemN oxygen-independ 70.3 1.2E+02 0.0025 33.8 14.9 102 75-203 102-221 (455)
136 cd07948 DRE_TIM_HCS Saccharomy 70.1 1.2E+02 0.0025 31.4 14.0 134 4-166 71-217 (262)
137 COG1856 Uncharacterized homolo 69.6 85 0.0018 32.5 12.3 105 60-194 40-161 (275)
138 cd06349 PBP1_ABC_ligand_bindin 69.5 92 0.002 32.1 13.2 40 146-190 181-220 (340)
139 PLN02334 ribulose-phosphate 3- 69.4 1.3E+02 0.0028 30.1 16.0 98 10-128 26-126 (229)
140 PRK08195 4-hyroxy-2-oxovalerat 69.2 1E+02 0.0023 33.0 13.8 105 7-124 91-196 (337)
141 TIGR03217 4OH_2_O_val_ald 4-hy 69.1 1.1E+02 0.0024 32.8 13.9 106 6-124 89-195 (333)
142 PRK06843 inosine 5-monophospha 68.6 81 0.0018 35.0 13.0 143 35-207 55-213 (404)
143 TIGR01212 radical SAM protein, 68.6 1.6E+02 0.0034 30.9 14.8 102 61-186 63-178 (302)
144 cd06359 PBP1_Nba_like Type I p 68.4 1.2E+02 0.0027 31.2 13.9 88 71-190 129-218 (333)
145 cd04738 DHOD_2_like Dihydrooro 67.8 48 0.001 35.2 10.8 125 33-177 183-324 (327)
146 cd06364 PBP1_CaSR Ligand-bindi 67.7 1.2E+02 0.0026 34.2 14.5 135 28-192 124-276 (510)
147 TIGR01125 MiaB-like tRNA modif 67.5 41 0.00088 37.0 10.6 128 57-205 162-307 (430)
148 cd07943 DRE_TIM_HOA 4-hydroxy- 67.0 1.3E+02 0.0028 30.8 13.4 132 6-167 87-219 (263)
149 PLN02535 glycolate oxidase 66.1 83 0.0018 34.4 12.3 33 58-91 133-165 (364)
150 COG0159 TrpA Tryptophan syntha 66.0 1.4E+02 0.0031 31.3 13.5 157 64-272 4-170 (265)
151 PRK05692 hydroxymethylglutaryl 65.0 1.9E+02 0.004 30.4 15.6 135 5-167 80-233 (287)
152 cd04726 KGPDC_HPS 3-Keto-L-gul 65.0 54 0.0012 31.5 9.8 111 60-204 11-121 (202)
153 TIGR03669 urea_ABC_arch urea A 64.7 1.2E+02 0.0025 32.7 13.2 34 156-191 186-219 (374)
154 PF01180 DHO_dh: Dihydroorotat 64.6 20 0.00044 37.2 7.2 130 33-182 148-293 (295)
155 PRK05294 carB carbamoyl phosph 64.6 43 0.00094 41.3 11.0 130 74-217 552-688 (1066)
156 PRK05660 HemN family oxidoredu 64.4 1E+02 0.0022 33.3 12.8 103 74-203 57-177 (378)
157 PRK07565 dihydroorotate dehydr 63.7 1.8E+02 0.0039 30.9 14.2 123 34-181 152-287 (334)
158 TIGR01211 ELP3 histone acetylt 62.9 78 0.0017 36.2 11.8 139 41-204 95-276 (522)
159 PRK15404 leucine ABC transport 62.7 2.1E+02 0.0046 30.3 15.0 40 146-190 207-246 (369)
160 cd06333 PBP1_ABC-type_HAAT_lik 62.5 1.8E+02 0.0039 29.4 15.0 101 62-192 119-220 (312)
161 TIGR03849 arch_ComA phosphosul 62.5 95 0.0021 32.1 11.3 129 17-166 24-155 (237)
162 PRK08745 ribulose-phosphate 3- 62.4 1.8E+02 0.0038 29.6 13.2 133 12-182 80-217 (223)
163 PRK07107 inosine 5-monophospha 62.2 41 0.00089 38.2 9.5 46 65-122 244-289 (502)
164 PRK08091 ribulose-phosphate 3- 62.1 1.9E+02 0.0041 29.6 14.1 134 11-182 85-225 (228)
165 PRK12815 carB carbamoyl phosph 61.7 65 0.0014 39.9 11.7 127 75-217 554-689 (1068)
166 PRK08599 coproporphyrinogen II 61.6 1.8E+02 0.0039 31.2 13.9 100 61-186 34-151 (377)
167 PLN02389 biotin synthase 61.5 2.5E+02 0.0054 30.7 17.3 108 59-193 116-237 (379)
168 cd06341 PBP1_ABC_ligand_bindin 61.4 49 0.0011 34.1 9.3 106 63-196 119-224 (341)
169 PLN02411 12-oxophytodienoate r 61.4 1.2E+02 0.0026 33.2 12.7 73 55-128 151-242 (391)
170 PRK01130 N-acetylmannosamine-6 61.2 1.7E+02 0.0038 28.8 13.4 148 36-218 45-206 (221)
171 cd06340 PBP1_ABC_ligand_bindin 60.5 2.2E+02 0.0047 29.7 14.1 43 146-193 190-232 (347)
172 PRK07998 gatY putative fructos 60.4 1.5E+02 0.0032 31.3 12.6 204 37-272 8-244 (283)
173 PRK05301 pyrroloquinoline quin 60.3 1.4E+02 0.003 32.0 12.8 44 58-112 45-88 (378)
174 cd07937 DRE_TIM_PC_TC_5S Pyruv 60.1 1.9E+02 0.004 30.0 13.3 123 12-165 99-224 (275)
175 TIGR00238 KamA family protein. 60.1 1.6E+02 0.0034 31.5 13.1 100 61-186 144-252 (331)
176 TIGR01369 CPSaseII_lrg carbamo 59.8 58 0.0013 40.2 10.9 128 75-217 553-688 (1050)
177 PRK08883 ribulose-phosphate 3- 59.7 2E+02 0.0042 29.1 13.0 133 12-182 76-213 (220)
178 PTZ00413 lipoate synthase; Pro 59.6 92 0.002 34.5 11.1 50 60-115 178-227 (398)
179 PRK14336 (dimethylallyl)adenos 59.5 1.1E+02 0.0024 33.6 12.1 126 57-203 151-294 (418)
180 TIGR03407 urea_ABC_UrtA urea A 59.1 2E+02 0.0044 30.2 13.7 94 63-186 120-215 (359)
181 PRK13347 coproporphyrinogen II 59.1 1.8E+02 0.0039 32.3 13.7 103 75-204 103-223 (453)
182 PRK03620 5-dehydro-4-deoxygluc 59.0 2.4E+02 0.0051 29.6 15.2 124 59-222 25-154 (303)
183 TIGR03217 4OH_2_O_val_ald 4-hy 58.8 2.6E+02 0.0056 30.0 19.1 119 52-194 14-135 (333)
184 PRK05096 guanosine 5'-monophos 58.8 74 0.0016 34.5 10.2 82 33-118 57-153 (346)
185 PRK02506 dihydroorotate dehydr 58.8 96 0.0021 32.8 11.1 129 33-182 143-290 (310)
186 TIGR01037 pyrD_sub1_fam dihydr 58.5 2.1E+02 0.0045 29.7 13.4 125 33-181 143-281 (300)
187 PRK09997 hydroxypyruvate isome 58.5 48 0.001 33.4 8.5 53 35-88 42-111 (258)
188 PRK08318 dihydropyrimidine deh 58.4 1.9E+02 0.0042 31.6 13.7 123 33-181 154-301 (420)
189 COG0084 TatD Mg-dependent DNas 58.4 76 0.0016 32.9 10.0 173 49-275 5-198 (256)
190 cd06375 PBP1_mGluR_groupII Lig 58.4 1.9E+02 0.004 32.0 13.7 131 30-190 113-262 (458)
191 PF09370 TIM-br_sig_trns: TIM- 58.2 1.5E+02 0.0033 31.1 12.0 147 33-207 66-235 (268)
192 TIGR01036 pyrD_sub2 dihydrooro 58.2 53 0.0012 35.2 9.1 124 33-177 189-332 (335)
193 COG1210 GalU UDP-glucose pyrop 57.9 18 0.00039 38.1 5.2 48 60-113 34-81 (291)
194 PRK12595 bifunctional 3-deoxy- 57.8 2.6E+02 0.0057 30.4 14.4 120 36-182 215-352 (360)
195 cd07938 DRE_TIM_HMGL 3-hydroxy 57.6 2.3E+02 0.005 29.4 13.4 134 3-164 72-224 (274)
196 cd00381 IMPDH IMPDH: The catal 57.5 1.8E+02 0.0039 31.0 12.9 60 146-207 94-154 (325)
197 cd06347 PBP1_ABC_ligand_bindin 57.2 2.2E+02 0.0048 28.8 13.6 41 146-191 182-222 (334)
198 PRK05581 ribulose-phosphate 3- 57.1 1.9E+02 0.0042 28.1 14.6 118 57-205 11-128 (220)
199 PF00682 HMGL-like: HMGL-like 57.0 2.1E+02 0.0045 28.4 12.6 103 34-164 109-212 (237)
200 cd07939 DRE_TIM_NifV Streptomy 57.0 2.3E+02 0.005 28.9 14.0 134 5-167 70-216 (259)
201 TIGR00539 hemN_rel putative ox 56.9 2.7E+02 0.0059 29.7 14.6 102 76-204 52-171 (360)
202 PRK07695 transcriptional regul 56.8 70 0.0015 31.2 9.0 144 46-218 26-181 (201)
203 PRK06256 biotin synthase; Vali 56.7 1.5E+02 0.0033 31.1 12.2 48 59-114 91-139 (336)
204 COG0269 SgbH 3-hexulose-6-phos 56.6 1.3E+02 0.0028 30.7 10.9 95 14-124 77-171 (217)
205 PRK07807 inosine 5-monophospha 56.4 1E+02 0.0022 34.9 11.2 43 63-117 227-269 (479)
206 cd06337 PBP1_ABC_ligand_bindin 56.3 2.2E+02 0.0047 29.9 13.3 41 146-191 194-234 (357)
207 cd06326 PBP1_STKc_like Type I 55.9 1E+02 0.0023 31.3 10.6 107 61-197 121-227 (336)
208 PRK09549 mtnW 2,3-diketo-5-met 55.6 3.2E+02 0.0069 30.4 14.7 149 11-183 157-318 (407)
209 PRK05628 coproporphyrinogen II 55.6 2.8E+02 0.006 29.8 14.2 84 103-204 78-179 (375)
210 cd00958 DhnA Class I fructose- 55.2 2.2E+02 0.0049 28.2 12.9 107 60-191 74-184 (235)
211 PRK13405 bchH magnesium chelat 54.9 1.5E+02 0.0032 37.5 13.1 73 147-223 58-136 (1209)
212 TIGR02109 PQQ_syn_pqqE coenzym 54.7 2.9E+02 0.0062 29.3 13.9 54 57-124 35-88 (358)
213 cd06268 PBP1_ABC_transporter_L 54.5 2.1E+02 0.0046 27.7 13.1 32 157-190 189-220 (298)
214 PRK14057 epimerase; Provisiona 54.4 2.4E+02 0.0053 29.4 12.8 134 41-207 13-153 (254)
215 cd06356 PBP1_Amide_Urea_BP_lik 54.4 2.7E+02 0.0058 28.8 13.8 36 156-193 185-221 (334)
216 PF04055 Radical_SAM: Radical 54.2 1.6E+02 0.0034 26.1 10.3 103 56-186 25-142 (166)
217 COG1809 (2R)-phospho-3-sulfola 53.8 1.1E+02 0.0023 31.7 9.7 127 17-164 43-172 (258)
218 PRK08417 dihydroorotase; Provi 53.7 2.3E+02 0.0049 30.7 13.1 109 49-184 34-143 (386)
219 PLN02951 Molybderin biosynthes 53.5 2.4E+02 0.0053 30.6 13.3 86 59-174 90-176 (373)
220 TIGR02025 BchH magnesium chela 53.5 1.7E+02 0.0037 37.0 13.3 74 146-223 45-126 (1216)
221 PRK07028 bifunctional hexulose 53.5 2.5E+02 0.0054 30.9 13.6 118 50-203 4-125 (430)
222 PRK09722 allulose-6-phosphate 53.3 2.2E+02 0.0048 29.1 12.1 114 60-206 13-128 (229)
223 cd04747 OYE_like_5_FMN Old yel 53.1 92 0.002 33.8 10.0 102 56-162 131-252 (361)
224 TIGR00091 tRNA (guanine-N(7)-) 52.7 2.2E+02 0.0049 27.5 12.7 139 9-184 8-149 (194)
225 TIGR00433 bioB biotin syntheta 52.7 2.6E+02 0.0056 28.6 12.9 83 32-116 157-241 (296)
226 PRK14340 (dimethylallyl)adenos 52.5 63 0.0014 35.9 8.8 135 47-203 164-318 (445)
227 cd02803 OYE_like_FMN_family Ol 52.4 2E+02 0.0044 30.0 12.2 121 35-176 194-324 (327)
228 cd04740 DHOD_1B_like Dihydroor 52.3 2.9E+02 0.0062 28.5 16.5 78 42-126 84-163 (296)
229 cd06336 PBP1_ABC_ligand_bindin 52.0 2E+02 0.0043 29.9 12.1 98 64-191 126-225 (347)
230 TIGR00010 hydrolase, TatD fami 51.6 89 0.0019 30.7 9.0 61 50-127 4-64 (252)
231 TIGR00735 hisF imidazoleglycer 51.4 1.2E+02 0.0026 30.9 10.1 145 8-187 87-253 (254)
232 PLN02746 hydroxymethylglutaryl 51.2 3.6E+02 0.0077 29.3 17.0 180 6-221 123-336 (347)
233 PRK06267 hypothetical protein; 51.1 72 0.0016 34.3 8.7 28 59-86 63-90 (350)
234 TIGR02912 sulfite_red_C sulfit 50.7 1.2E+02 0.0025 32.0 10.1 93 27-128 28-147 (314)
235 PRK05567 inosine 5'-monophosph 50.6 99 0.0021 34.8 10.0 92 66-193 231-340 (486)
236 PRK07565 dihydroorotate dehydr 50.5 3.4E+02 0.0073 28.8 17.6 148 33-206 87-258 (334)
237 TIGR03820 lys_2_3_AblA lysine- 50.5 2.3E+02 0.0049 31.7 12.6 98 60-185 139-246 (417)
238 PRK14862 rimO ribosomal protei 50.4 91 0.002 34.5 9.6 69 57-129 166-242 (440)
239 cd06334 PBP1_ABC_ligand_bindin 50.3 3.1E+02 0.0067 28.9 13.3 42 146-192 186-227 (351)
240 TIGR02810 agaZ_gatZ D-tagatose 50.3 2.5E+02 0.0055 31.4 12.7 84 30-114 20-117 (420)
241 cd08210 RLP_RrRLP Ribulose bis 50.0 3.8E+02 0.0082 29.3 15.1 146 10-183 147-307 (364)
242 cd00381 IMPDH IMPDH: The catal 50.0 1.9E+02 0.0041 30.8 11.6 41 103-164 122-162 (325)
243 cd02922 FCB2_FMN Flavocytochro 49.7 3.7E+02 0.008 29.1 15.7 40 49-90 119-158 (344)
244 cd04729 NanE N-acetylmannosami 49.4 27 0.00058 34.6 4.9 46 148-194 82-131 (219)
245 PF02679 ComA: (2R)-phospho-3- 49.3 59 0.0013 33.6 7.4 127 17-165 37-167 (244)
246 COG1852 Uncharacterized conser 49.3 20 0.00043 36.0 3.7 54 55-128 113-166 (209)
247 PRK13660 hypothetical protein; 49.1 1.3E+02 0.0028 29.8 9.4 94 61-179 28-125 (182)
248 PRK08207 coproporphyrinogen II 49.1 2.8E+02 0.0061 31.4 13.3 34 168-202 302-338 (488)
249 cd07941 DRE_TIM_LeuA3 Desulfob 48.2 3.3E+02 0.0072 28.1 13.1 128 9-164 83-226 (273)
250 TIGR01769 GGGP geranylgeranylg 48.2 98 0.0021 31.1 8.6 74 59-164 131-204 (205)
251 COG0041 PurE Phosphoribosylcar 48.2 70 0.0015 31.1 7.1 59 29-87 10-69 (162)
252 PLN03069 magnesiumprotoporphyr 48.2 1.1E+02 0.0024 38.5 10.8 97 147-252 69-174 (1220)
253 PRK05458 guanosine 5'-monophos 48.0 1.6E+02 0.0034 31.8 10.6 63 146-212 97-163 (326)
254 TIGR02321 Pphn_pyruv_hyd phosp 48.0 3.6E+02 0.0079 28.5 21.4 191 32-250 60-257 (290)
255 PRK10812 putative DNAse; Provi 48.0 52 0.0011 34.0 6.8 64 49-128 5-70 (265)
256 TIGR01369 CPSaseII_lrg carbamo 47.7 63 0.0014 39.9 8.6 130 74-216 4-145 (1050)
257 cd02801 DUS_like_FMN Dihydrour 47.5 2.8E+02 0.0061 27.1 14.7 143 45-207 52-203 (231)
258 PLN02431 ferredoxin--nitrite r 47.4 1.4E+02 0.003 34.7 10.7 99 27-129 144-267 (587)
259 PRK11449 putative deoxyribonuc 47.3 91 0.002 32.0 8.5 177 48-274 6-199 (258)
260 TIGR02041 CysI sulfite reducta 47.1 73 0.0016 36.4 8.4 66 20-87 62-143 (541)
261 PF13433 Peripla_BP_5: Peripla 46.7 74 0.0016 34.8 8.0 113 47-190 103-222 (363)
262 TIGR01162 purE phosphoribosyla 46.7 69 0.0015 31.0 6.9 49 37-86 16-64 (156)
263 PRK07028 bifunctional hexulose 46.7 3.3E+02 0.0072 29.9 13.2 163 11-218 23-194 (430)
264 TIGR02319 CPEP_Pphonmut carbox 46.6 3.9E+02 0.0084 28.4 22.3 209 33-274 63-279 (294)
265 TIGR01306 GMP_reduct_2 guanosi 46.5 1.1E+02 0.0024 32.8 9.2 57 146-205 94-154 (321)
266 PF01261 AP_endonuc_2: Xylose 46.4 1.4E+02 0.0031 27.9 9.1 47 37-84 31-93 (213)
267 cd04509 PBP1_ABC_transporter_G 46.3 2.8E+02 0.0061 26.8 13.7 31 158-190 191-223 (299)
268 PRK09249 coproporphyrinogen II 46.2 4.5E+02 0.0097 29.2 14.2 83 102-202 120-220 (453)
269 PLN02455 fructose-bisphosphate 46.2 79 0.0017 34.4 7.9 135 142-289 121-293 (358)
270 cd06361 PBP1_GPC6A_like Ligand 45.9 3.6E+02 0.0077 29.2 13.2 100 68-191 164-265 (403)
271 cd06355 PBP1_FmdD_like Peripla 45.6 3.7E+02 0.0081 28.0 13.1 42 148-191 177-222 (348)
272 PRK08005 epimerase; Validated 45.5 3.4E+02 0.0073 27.4 12.9 130 11-179 75-206 (210)
273 PRK07259 dihydroorotate dehydr 45.5 3.7E+02 0.008 27.9 16.5 138 43-206 87-253 (301)
274 PRK08195 4-hyroxy-2-oxovalerat 45.4 4.2E+02 0.0091 28.5 15.2 118 53-194 16-136 (337)
275 TIGR03470 HpnH hopanoid biosyn 45.3 3.3E+02 0.0072 28.8 12.5 65 117-186 126-193 (318)
276 COG1902 NemA NADH:flavin oxido 45.2 2.7E+02 0.0058 30.5 12.0 127 55-191 135-293 (363)
277 cd04737 LOX_like_FMN L-Lactate 44.8 2.7E+02 0.0058 30.3 11.8 33 58-91 134-166 (351)
278 TIGR03821 AblA_like_1 lysine-2 44.7 98 0.0021 32.9 8.5 100 12-115 198-301 (321)
279 cd07940 DRE_TIM_IPMS 2-isoprop 44.7 3.6E+02 0.0079 27.6 14.3 134 5-167 70-223 (268)
280 TIGR01303 IMP_DH_rel_1 IMP deh 44.4 1.9E+02 0.0042 32.7 11.1 95 62-191 224-333 (475)
281 cd08206 RuBisCO_large_I_II_III 44.3 3.4E+02 0.0074 30.3 12.8 150 11-183 155-317 (414)
282 PRK05286 dihydroorotate dehydr 44.1 3.8E+02 0.0081 28.8 12.8 76 146-258 157-246 (344)
283 TIGR03586 PseI pseudaminic aci 43.9 2.5E+02 0.0055 30.2 11.4 97 35-162 123-219 (327)
284 PTZ00314 inosine-5'-monophosph 43.9 1.3E+02 0.0027 34.2 9.6 116 62-206 178-300 (495)
285 PRK00043 thiE thiamine-phospha 43.4 2.5E+02 0.0053 27.1 10.5 170 17-219 6-193 (212)
286 cd00564 TMP_TenI Thiamine mono 43.3 2.8E+02 0.0061 25.9 12.9 65 151-218 108-182 (196)
287 COG5016 Pyruvate/oxaloacetate 43.1 42 0.00092 37.3 5.4 66 10-79 162-228 (472)
288 cd04739 DHOD_like Dihydroorota 43.1 4.4E+02 0.0094 28.0 13.2 123 35-181 151-285 (325)
289 TIGR00162 conserved hypothetic 42.7 3.4E+02 0.0074 26.7 13.3 128 77-216 15-148 (188)
290 cd06358 PBP1_NHase Type I peri 42.6 2.6E+02 0.0057 28.7 11.1 34 156-191 185-218 (333)
291 TIGR03332 salvage_mtnW 2,3-dik 42.3 5.3E+02 0.011 28.8 14.0 149 11-183 162-323 (407)
292 PRK13866 plasmid partitioning 42.3 1.5E+02 0.0032 32.2 9.3 68 147-215 51-139 (336)
293 PF09370 TIM-br_sig_trns: TIM- 42.3 2.7E+02 0.0058 29.4 10.8 76 186-270 81-169 (268)
294 PF13458 Peripla_BP_6: Peripla 42.1 2E+02 0.0042 29.3 10.0 100 62-191 120-221 (343)
295 PRK07455 keto-hydroxyglutarate 42.1 3.4E+02 0.0074 26.5 12.8 103 56-204 18-120 (187)
296 PRK00230 orotidine 5'-phosphat 42.0 40 0.00086 34.0 4.8 35 147-181 189-224 (230)
297 TIGR02708 L_lactate_ox L-lacta 41.8 2.5E+02 0.0054 30.8 11.1 33 58-91 142-174 (367)
298 PF00834 Ribul_P_3_epim: Ribul 41.8 1.6E+02 0.0034 29.4 8.9 112 60-205 10-124 (201)
299 TIGR01302 IMP_dehydrog inosine 41.7 2.2E+02 0.0048 31.7 10.9 116 63-206 162-283 (450)
300 PRK14330 (dimethylallyl)adenos 41.6 1.9E+02 0.0041 31.9 10.3 125 57-203 167-310 (434)
301 PLN03241 magnesium chelatase s 41.3 3.7E+02 0.008 34.5 13.7 96 148-252 113-219 (1353)
302 PLN02334 ribulose-phosphate 3- 41.2 3.8E+02 0.0082 26.8 13.8 122 50-205 10-134 (229)
303 TIGR02495 NrdG2 anaerobic ribo 41.0 3.2E+02 0.007 25.9 12.3 55 58-129 46-100 (191)
304 TIGR00433 bioB biotin syntheta 41.0 1.6E+02 0.0034 30.2 9.1 28 60-87 63-91 (296)
305 cd06362 PBP1_mGluR Ligand bind 41.0 4.9E+02 0.011 28.1 13.4 39 146-186 216-256 (452)
306 PRK09058 coproporphyrinogen II 41.0 4.1E+02 0.0089 29.5 12.9 101 75-202 114-232 (449)
307 TIGR02660 nifV_homocitr homoci 40.9 5E+02 0.011 28.0 14.8 135 4-167 72-219 (365)
308 PLN02274 inosine-5'-monophosph 40.5 2.9E+02 0.0064 31.4 11.8 116 62-206 182-307 (505)
309 cd06348 PBP1_ABC_ligand_bindin 40.4 4.3E+02 0.0093 27.2 14.5 35 156-192 190-224 (344)
310 cd00429 RPE Ribulose-5-phospha 40.4 3.4E+02 0.0073 26.0 14.7 96 10-127 18-115 (211)
311 cd00429 RPE Ribulose-5-phospha 39.8 3.4E+02 0.0075 25.9 15.0 99 58-185 8-106 (211)
312 PRK11320 prpB 2-methylisocitra 39.7 4.9E+02 0.011 27.6 21.8 186 33-250 64-256 (292)
313 PRK09875 putative hydrolase; P 39.5 4.8E+02 0.01 27.5 14.1 46 32-81 137-184 (292)
314 cd06339 PBP1_YraM_LppC_lipopro 39.5 4.5E+02 0.0098 27.3 12.4 25 61-85 109-133 (336)
315 PRK00507 deoxyribose-phosphate 39.4 3.1E+02 0.0068 27.7 10.7 76 58-164 132-207 (221)
316 TIGR00737 nifR3_yhdG putative 39.0 4.8E+02 0.01 27.4 15.6 144 47-210 62-215 (319)
317 PRK12493 magnesium chelatase s 39.0 2.9E+02 0.0064 35.3 12.4 73 147-223 60-142 (1310)
318 PRK13384 delta-aminolevulinic 38.6 3.1E+02 0.0066 29.7 10.8 123 60-188 59-190 (322)
319 cd06330 PBP1_Arsenic_SBP_like 38.5 4.6E+02 0.0099 26.9 12.6 37 156-194 193-231 (346)
320 cd06329 PBP1_SBP_like_3 Peripl 38.4 2.8E+02 0.006 28.7 10.6 41 146-191 192-232 (342)
321 PRK14335 (dimethylallyl)adenos 37.9 6.1E+02 0.013 28.2 16.6 119 58-193 180-319 (455)
322 PF03444 HrcA_DNA-bdg: Winged 37.9 20 0.00044 30.8 1.7 33 393-441 37-70 (78)
323 cd04735 OYE_like_4_FMN Old yel 37.8 2.9E+02 0.0064 29.6 10.9 142 24-195 183-340 (353)
324 KOG2550 IMP dehydrogenase/GMP 37.7 3.5E+02 0.0076 30.5 11.2 96 61-191 249-359 (503)
325 cd06327 PBP1_SBP_like_1 Peripl 37.5 4.7E+02 0.01 26.8 13.1 40 146-190 181-222 (334)
326 cd06363 PBP1_Taste_receptor Li 37.3 5.5E+02 0.012 27.5 13.4 46 146-193 221-267 (410)
327 cd01573 modD_like ModD; Quinol 37.2 3.4E+02 0.0073 28.3 10.9 111 49-190 116-234 (272)
328 COG1794 RacX Aspartate racemas 37.1 2.9E+02 0.0063 28.5 10.0 99 147-256 64-194 (230)
329 PRK08508 biotin synthase; Prov 37.0 3E+02 0.0066 28.5 10.5 61 144-205 42-108 (279)
330 COG0269 SgbH 3-hexulose-6-phos 36.9 3.6E+02 0.0079 27.6 10.6 85 100-204 40-124 (217)
331 PRK02083 imidazole glycerol ph 36.7 3.1E+02 0.0068 27.7 10.4 144 9-186 88-250 (253)
332 cd04732 HisA HisA. Phosphorib 36.4 1.3E+02 0.0028 29.7 7.4 83 68-180 35-119 (234)
333 COG0329 DapA Dihydrodipicolina 36.3 5.4E+02 0.012 27.1 15.4 108 59-191 22-135 (299)
334 PRK08745 ribulose-phosphate 3- 36.2 4.8E+02 0.01 26.5 13.2 115 59-206 13-130 (223)
335 cd03329 MR_like_4 Mandelate ra 35.6 5.8E+02 0.013 27.3 13.6 148 60-252 143-294 (368)
336 PRK01060 endonuclease IV; Prov 35.6 2.2E+02 0.0047 28.8 9.1 49 38-87 52-114 (281)
337 PF06908 DUF1273: Protein of u 35.5 2.4E+02 0.0051 27.7 8.9 94 61-180 28-126 (177)
338 smart00729 Elp3 Elongator prot 35.4 3.6E+02 0.0078 24.8 12.8 62 56-126 27-95 (216)
339 PRK09566 nirA ferredoxin-nitri 35.3 2E+02 0.0044 32.5 9.6 102 26-129 72-196 (513)
340 COG1891 Uncharacterized protei 35.2 4.8E+02 0.01 26.2 11.4 157 8-187 11-183 (235)
341 PLN02495 oxidoreductase, actin 35.1 6.5E+02 0.014 27.8 13.2 126 33-181 168-318 (385)
342 PRK12815 carB carbamoyl phosph 35.0 1.7E+02 0.0037 36.3 9.6 132 74-216 5-146 (1068)
343 PRK06267 hypothetical protein; 34.7 2.4E+02 0.0052 30.3 9.6 91 31-125 151-243 (350)
344 PRK14331 (dimethylallyl)adenos 34.6 2.4E+02 0.0053 31.1 9.9 126 57-204 173-316 (437)
345 cd00956 Transaldolase_FSA Tran 34.6 1.3E+02 0.0027 30.2 7.0 153 37-234 41-205 (211)
346 TIGR00238 KamA family protein. 34.5 2E+02 0.0043 30.8 8.9 101 11-115 214-318 (331)
347 PRK08208 coproporphyrinogen II 34.5 6.7E+02 0.014 27.7 14.3 85 102-204 109-212 (430)
348 cd06345 PBP1_ABC_ligand_bindin 34.3 5.3E+02 0.012 26.5 13.7 41 146-191 190-230 (344)
349 cd04736 MDH_FMN Mandelate dehy 34.3 3.1E+02 0.0067 30.0 10.3 41 49-92 117-157 (361)
350 PRK07379 coproporphyrinogen II 34.2 6.5E+02 0.014 27.5 13.6 104 74-204 65-186 (400)
351 PRK07094 biotin synthase; Prov 34.2 4.2E+02 0.0092 27.6 11.2 20 57-76 160-179 (323)
352 TIGR00126 deoC deoxyribose-pho 34.1 5E+02 0.011 26.1 11.2 120 58-209 14-141 (211)
353 PLN02474 UTP--glucose-1-phosph 34.1 59 0.0013 36.7 4.9 97 363-473 26-138 (469)
354 TIGR01304 IMP_DH_rel_2 IMP deh 34.0 1.9E+02 0.0041 31.7 8.7 115 148-274 145-276 (369)
355 PRK14017 galactonate dehydrata 33.9 5.1E+02 0.011 27.9 12.1 154 60-252 124-281 (382)
356 PRK13505 formate--tetrahydrofo 33.9 6.9E+02 0.015 29.1 13.3 120 39-190 365-486 (557)
357 cd00377 ICL_PEPM Members of th 33.9 3.7E+02 0.008 27.4 10.4 93 148-273 86-196 (243)
358 TIGR03551 F420_cofH 7,8-dideme 33.8 6.1E+02 0.013 27.0 12.5 121 143-274 71-216 (343)
359 PRK13210 putative L-xylulose 5 33.5 5.1E+02 0.011 26.0 12.3 18 63-80 17-34 (284)
360 cd01572 QPRTase Quinolinate ph 33.5 1.2E+02 0.0027 31.5 6.9 104 52-189 119-229 (268)
361 PTZ00286 6-phospho-1-fructokin 33.3 71 0.0015 35.9 5.5 70 39-128 145-214 (459)
362 KOG1431 GDP-L-fucose synthetas 33.3 3.9E+02 0.0084 28.1 10.1 126 65-193 88-238 (315)
363 cd00384 ALAD_PBGS Porphobilino 33.2 4.3E+02 0.0094 28.5 10.9 124 60-189 49-181 (314)
364 cd01311 PDC_hydrolase 2-pyrone 33.1 4.9E+02 0.011 26.3 11.1 97 64-192 30-131 (263)
365 TIGR03820 lys_2_3_AblA lysine- 32.9 2.1E+02 0.0046 31.9 9.0 108 4-115 203-313 (417)
366 cd06342 PBP1_ABC_LIVBP_like Ty 32.9 5.3E+02 0.012 26.0 14.0 33 157-191 189-221 (334)
367 cd03316 MR_like Mandelate race 32.4 6.2E+02 0.013 26.7 13.5 152 60-252 139-293 (357)
368 PRK14327 (dimethylallyl)adenos 32.1 3.5E+02 0.0077 30.8 10.8 124 57-204 239-383 (509)
369 PF14488 DUF4434: Domain of un 32.0 1.5E+02 0.0032 28.7 6.8 71 56-126 14-89 (166)
370 cd03465 URO-D_like The URO-D _ 31.5 5.5E+02 0.012 26.6 11.5 113 36-181 211-329 (330)
371 PRK05096 guanosine 5'-monophos 31.5 1.8E+02 0.004 31.6 7.9 59 146-206 108-169 (346)
372 PRK05835 fructose-bisphosphate 31.5 1.1E+02 0.0025 32.6 6.4 76 4-80 154-253 (307)
373 TIGR03470 HpnH hopanoid biosyn 31.4 3.3E+02 0.0071 28.8 9.9 53 33-86 149-202 (318)
374 PF00682 HMGL-like: HMGL-like 31.4 2.2E+02 0.0047 28.3 8.1 104 58-194 10-129 (237)
375 cd08148 RuBisCO_large Ribulose 31.1 7.5E+02 0.016 27.2 13.5 148 11-183 150-310 (366)
376 cd07944 DRE_TIM_HOA_like 4-hyd 31.0 6.1E+02 0.013 26.2 17.7 121 53-196 11-132 (266)
377 TIGR01740 pyrF orotidine 5'-ph 31.0 1.4E+02 0.003 29.7 6.6 137 10-181 69-213 (213)
378 PRK07315 fructose-bisphosphate 31.0 1.3E+02 0.0028 31.8 6.6 74 5-83 154-233 (293)
379 cd04722 TIM_phosphate_binding 30.9 4.2E+02 0.009 24.2 15.9 160 11-204 19-187 (200)
380 PRK12581 oxaloacetate decarbox 30.8 8.4E+02 0.018 27.7 18.0 127 56-203 29-166 (468)
381 PRK08072 nicotinate-nucleotide 30.7 5E+02 0.011 27.3 10.9 110 52-193 125-241 (277)
382 PRK05301 pyrroloquinoline quin 30.6 2.1E+02 0.0045 30.7 8.3 72 10-82 107-189 (378)
383 PTZ00170 D-ribulose-5-phosphat 30.6 5.7E+02 0.012 25.7 14.7 119 58-205 15-133 (228)
384 cd08209 RLP_DK-MTP-1-P-enolase 30.6 7.8E+02 0.017 27.3 15.0 150 11-184 147-309 (391)
385 cd00019 AP2Ec AP endonuclease 30.5 5.8E+02 0.013 25.8 11.2 20 62-81 10-29 (279)
386 PRK11197 lldD L-lactate dehydr 30.5 6.1E+02 0.013 28.0 11.9 34 58-92 131-164 (381)
387 PRK09283 delta-aminolevulinic 30.4 5.2E+02 0.011 28.0 10.9 123 60-188 57-188 (323)
388 PRK04302 triosephosphate isome 30.4 5.5E+02 0.012 25.5 12.3 117 68-219 78-207 (223)
389 cd00331 IGPS Indole-3-glycerol 30.1 5.3E+02 0.012 25.2 10.7 123 47-207 10-139 (217)
390 PF02593 dTMP_synthase: Thymid 30.0 2E+02 0.0043 29.3 7.5 102 103-223 9-117 (217)
391 PLN02735 carbamoyl-phosphate s 30.0 3.7E+02 0.008 33.7 11.2 131 74-216 572-720 (1102)
392 TIGR02066 dsrB sulfite reducta 29.8 2.3E+02 0.0049 30.6 8.4 106 19-129 29-155 (341)
393 PLN00200 argininosuccinate syn 29.6 7E+02 0.015 27.8 12.2 47 35-82 18-65 (404)
394 COG2108 Uncharacterized conser 29.6 3.8E+02 0.0082 29.2 9.7 159 19-209 80-240 (353)
395 cd02810 DHOD_DHPD_FMN Dihydroo 29.6 6.2E+02 0.014 25.8 19.2 98 46-164 97-195 (289)
396 cd06344 PBP1_ABC_ligand_bindin 29.4 6.3E+02 0.014 25.9 14.2 42 146-192 182-223 (332)
397 PTZ00170 D-ribulose-5-phosphat 29.3 4.1E+02 0.009 26.7 9.8 134 12-181 83-218 (228)
398 PRK11933 yebU rRNA (cytosine-C 29.2 87 0.0019 35.3 5.3 59 20-88 117-175 (470)
399 PRK14333 (dimethylallyl)adenos 29.0 8.2E+02 0.018 27.1 12.8 130 58-204 176-326 (448)
400 PF12646 DUF3783: Domain of un 29.0 89 0.0019 25.0 3.9 30 168-197 9-38 (58)
401 PRK14325 (dimethylallyl)adenos 28.9 4.2E+02 0.0091 29.2 10.5 126 58-204 175-320 (444)
402 PRK14041 oxaloacetate decarbox 28.9 9E+02 0.019 27.4 13.6 129 1-162 87-225 (467)
403 TIGR00284 dihydropteroate synt 28.7 8.1E+02 0.018 28.0 12.8 128 37-184 242-378 (499)
404 TIGR01859 fruc_bis_ald_ fructo 28.6 7E+02 0.015 26.1 17.1 196 38-272 7-245 (282)
405 cd00452 KDPG_aldolase KDPG and 28.6 5.4E+02 0.012 24.8 12.9 148 12-218 24-175 (190)
406 PRK14332 (dimethylallyl)adenos 28.6 8.6E+02 0.019 27.1 14.0 31 57-87 181-211 (449)
407 cd02809 alpha_hydroxyacid_oxid 28.5 6.9E+02 0.015 26.0 16.7 129 60-222 127-264 (299)
408 PF00994 MoCF_biosynth: Probab 28.5 1.3E+02 0.0028 27.6 5.6 52 32-87 16-67 (144)
409 cd01568 QPRTase_NadC Quinolina 28.4 1.5E+02 0.0032 30.8 6.5 106 52-189 118-230 (269)
410 cd01310 TatD_DNAse TatD like p 28.4 3.1E+02 0.0067 26.7 8.6 51 63-129 16-66 (251)
411 PF00543 P-II: Nitrogen regula 28.4 1.2E+02 0.0025 26.6 5.0 54 393-459 10-75 (102)
412 TIGR02478 6PF1K_euk 6-phosphof 28.3 91 0.002 37.2 5.5 61 54-128 457-517 (745)
413 KOG2440 Pyrophosphate-dependen 28.2 2.8E+02 0.006 32.9 9.1 122 148-270 193-326 (666)
414 PRK06830 diphosphate--fructose 28.1 99 0.0021 34.7 5.4 72 37-128 139-210 (443)
415 TIGR01303 IMP_DH_rel_1 IMP deh 28.0 4.2E+02 0.0091 30.0 10.4 169 63-274 164-349 (475)
416 COG4474 Uncharacterized protei 27.5 1.7E+02 0.0036 29.0 6.2 61 61-135 28-89 (180)
417 TIGR03471 HpnJ hopanoid biosyn 27.4 7.2E+02 0.016 27.6 12.1 99 57-186 225-338 (472)
418 PRK13307 bifunctional formalde 27.3 8.8E+02 0.019 26.8 13.0 130 12-181 245-375 (391)
419 TIGR01574 miaB-methiolase tRNA 27.3 6.1E+02 0.013 28.0 11.5 136 45-203 158-317 (438)
420 PF00290 Trp_syntA: Tryptophan 27.3 4.9E+02 0.011 27.1 10.0 147 41-207 3-161 (259)
421 CHL00073 chlN photochlorophyll 27.2 9.5E+02 0.021 27.2 13.5 64 146-217 231-294 (457)
422 PF13377 Peripla_BP_3: Peripla 27.1 4.5E+02 0.0098 23.4 9.6 38 158-198 68-105 (160)
423 PRK13397 3-deoxy-7-phosphohept 27.0 7.4E+02 0.016 25.8 14.2 48 36-85 112-160 (250)
424 cd06350 PBP1_GPCR_family_C_lik 26.9 6.9E+02 0.015 25.5 13.2 39 146-186 204-243 (348)
425 TIGR02317 prpB methylisocitrat 26.9 7.7E+02 0.017 26.0 18.7 186 32-250 58-251 (285)
426 PLN02493 probable peroxisomal 26.8 5.8E+02 0.013 28.0 10.9 34 58-92 131-164 (367)
427 CHL00040 rbcL ribulose-1,5-bis 26.8 7.8E+02 0.017 28.1 12.1 149 11-182 190-351 (475)
428 PF13242 Hydrolase_like: HAD-h 26.5 36 0.00078 27.8 1.3 24 65-88 32-55 (75)
429 cd00764 Eukaryotic_PFK Phospho 26.4 1.1E+02 0.0024 36.6 5.7 60 55-128 458-517 (762)
430 cd00019 AP2Ec AP endonuclease 26.4 3.4E+02 0.0075 27.4 8.7 50 37-87 49-110 (279)
431 TIGR01859 fruc_bis_ald_ fructo 26.4 1.3E+02 0.0028 31.6 5.7 71 5-80 153-228 (282)
432 PRK13209 L-xylulose 5-phosphat 26.3 5.5E+02 0.012 25.9 10.2 24 62-85 21-44 (283)
433 TIGR03822 AblA_like_2 lysine-2 26.1 4.7E+02 0.01 27.7 10.0 79 33-115 214-295 (321)
434 TIGR01578 MiaB-like-B MiaB-lik 26.1 5.8E+02 0.012 28.1 10.9 128 57-203 160-303 (420)
435 cd03325 D-galactonate_dehydrat 26.0 8.2E+02 0.018 26.0 13.1 154 60-252 123-280 (352)
436 cd02067 B12-binding B12 bindin 26.0 4.5E+02 0.0098 23.0 10.0 85 27-127 7-91 (119)
437 COG1099 Predicted metal-depend 26.0 6.2E+02 0.014 26.4 10.1 186 49-273 4-202 (254)
438 TIGR00693 thiE thiamine-phosph 26.0 4E+02 0.0087 25.5 8.7 141 46-219 25-185 (196)
439 cd07945 DRE_TIM_CMS Leptospira 25.9 7.7E+02 0.017 25.7 12.9 133 7-167 77-225 (280)
440 PF14871 GHL6: Hypothetical gl 25.8 77 0.0017 29.5 3.5 79 171-256 44-130 (132)
441 TIGR00696 wecB_tagA_cpsF bacte 25.8 6.3E+02 0.014 24.6 11.9 98 61-193 34-132 (177)
442 PLN02979 glycolate oxidase 25.7 6.5E+02 0.014 27.7 10.9 34 58-92 130-163 (366)
443 PRK06843 inosine 5-monophospha 25.6 6.5E+02 0.014 28.1 11.1 39 66-116 156-194 (404)
444 PF04476 DUF556: Protein of un 25.5 7.7E+02 0.017 25.6 14.5 158 6-185 9-181 (235)
445 COG1453 Predicted oxidoreducta 25.4 4.6E+02 0.0099 29.1 9.6 143 118-274 16-168 (391)
446 PRK11194 ribosomal RNA large s 25.4 2.7E+02 0.0059 30.5 8.1 49 57-115 129-188 (372)
447 cd04738 DHOD_2_like Dihydrooro 25.3 8.3E+02 0.018 25.9 13.0 75 146-257 148-236 (327)
448 PRK06256 biotin synthase; Vali 25.3 7.6E+02 0.016 25.9 11.3 89 33-124 187-277 (336)
449 PRK14328 (dimethylallyl)adenos 25.2 7.7E+02 0.017 27.2 11.7 126 57-203 174-317 (439)
450 cd03319 L-Ala-DL-Glu_epimerase 25.2 7.9E+02 0.017 25.5 12.8 144 60-252 134-281 (316)
451 TIGR01361 DAHP_synth_Bsub phos 25.2 7.7E+02 0.017 25.5 14.7 104 35-162 121-226 (260)
452 PF07894 DUF1669: Protein of u 25.1 3E+02 0.0066 29.2 8.0 78 119-212 120-199 (284)
453 TIGR00222 panB 3-methyl-2-oxob 25.1 8.2E+02 0.018 25.7 15.9 178 48-274 14-196 (263)
454 PF06506 PrpR_N: Propionate ca 25.1 4E+02 0.0086 25.5 8.4 70 102-193 62-132 (176)
455 PRK14989 nitrite reductase sub 25.0 5.3E+02 0.011 31.3 11.1 101 20-131 565-687 (847)
456 PRK07535 methyltetrahydrofolat 25.0 5.9E+02 0.013 26.3 10.2 111 37-167 107-230 (261)
457 smart00344 HTH_ASNC helix_turn 25.0 1.3E+02 0.0029 25.9 4.7 75 380-468 17-94 (108)
458 cd07941 DRE_TIM_LeuA3 Desulfob 24.9 7.7E+02 0.017 25.4 12.0 155 12-183 28-192 (273)
459 PLN02898 HMP-P kinase/thiamin- 24.9 8.6E+02 0.019 27.3 12.2 146 38-218 312-479 (502)
460 cd04823 ALAD_PBGS_aspartate_ri 24.9 7.2E+02 0.016 26.9 10.8 122 60-188 52-185 (320)
461 TIGR02109 PQQ_syn_pqqE coenzym 24.9 3.1E+02 0.0068 29.0 8.4 72 10-82 98-180 (358)
462 PRK08883 ribulose-phosphate 3- 24.2 7.4E+02 0.016 24.9 13.6 117 60-207 10-127 (220)
463 PF00248 Aldo_ket_red: Aldo/ke 24.2 7.3E+02 0.016 24.8 11.7 222 11-274 24-268 (283)
464 cd00530 PTE Phosphotriesterase 24.1 3.4E+02 0.0075 27.5 8.3 25 61-85 31-55 (293)
465 PLN02564 6-phosphofructokinase 24.0 1.3E+02 0.0027 34.3 5.3 60 50-127 154-213 (484)
466 TIGR00078 nadC nicotinate-nucl 23.9 8.3E+02 0.018 25.4 11.9 106 52-189 115-225 (265)
467 cd03409 Chelatase_Class_II Cla 23.9 2.2E+02 0.0049 23.9 5.9 47 34-82 18-65 (101)
468 cd06323 PBP1_ribose_binding Pe 23.9 6.6E+02 0.014 24.2 13.0 11 75-85 120-130 (268)
469 cd06382 PBP1_iGluR_Kainate N-t 23.8 7.8E+02 0.017 25.1 14.2 39 146-189 172-210 (327)
470 PF09265 Cytokin-bind: Cytokin 23.8 54 0.0012 34.6 2.3 63 397-459 21-104 (281)
471 PLN02495 oxidoreductase, actin 23.8 6.1E+02 0.013 28.0 10.5 50 146-196 127-192 (385)
472 PLN02801 beta-amylase 23.6 1.9E+02 0.0041 33.1 6.5 71 145-223 40-121 (517)
473 PRK00377 cbiT cobalt-precorrin 23.6 6.7E+02 0.014 24.1 10.7 98 52-186 66-164 (198)
474 PRK08445 hypothetical protein; 23.6 9.4E+02 0.02 25.9 13.7 109 144-260 75-207 (348)
475 TIGR01305 GMP_reduct_1 guanosi 23.4 2.1E+02 0.0045 31.2 6.6 103 35-163 58-176 (343)
476 PF00731 AIRC: AIR carboxylase 23.4 1.5E+02 0.0033 28.4 5.1 49 37-86 18-66 (150)
477 PRK04208 rbcL ribulose bisopho 23.4 1.1E+03 0.024 26.8 12.6 150 10-183 182-345 (468)
478 COG0107 HisF Imidazoleglycerol 23.4 8.7E+02 0.019 25.4 16.1 99 104-226 110-223 (256)
479 TIGR02631 xylA_Arthro xylose i 23.3 4.7E+02 0.01 28.7 9.4 108 147-274 34-162 (382)
480 cd04732 HisA HisA. Phosphorib 23.3 7E+02 0.015 24.4 10.1 94 8-115 86-190 (234)
481 cd00958 DhnA Class I fructose- 23.2 5.4E+02 0.012 25.5 9.3 104 60-193 19-129 (235)
482 PRK14467 ribosomal RNA large s 23.1 5.4E+02 0.012 27.9 9.8 49 57-115 125-178 (348)
483 COG0621 MiaB 2-methylthioadeni 23.0 5.9E+02 0.013 28.7 10.2 142 35-194 147-307 (437)
484 PRK00979 tetrahydromethanopter 22.9 4.9E+02 0.011 28.0 9.2 74 62-163 167-265 (308)
485 PRK06852 aldolase; Validated 22.8 7.5E+02 0.016 26.5 10.6 46 155-205 198-249 (304)
486 cd00959 DeoC 2-deoxyribose-5-p 22.6 7.3E+02 0.016 24.3 13.2 123 58-213 13-147 (203)
487 KOG1228 Uncharacterized conser 22.6 86 0.0019 32.0 3.3 38 48-85 116-163 (256)
488 PRK13585 1-(5-phosphoribosyl)- 22.6 4.9E+02 0.011 25.8 8.9 97 64-194 34-132 (241)
489 PRK15458 tagatose 6-phosphate 22.5 1.1E+03 0.023 26.7 11.9 97 30-127 24-137 (426)
490 COG1954 GlpP Glycerol-3-phosph 22.5 59 0.0013 32.2 2.1 40 157-196 94-134 (181)
491 PLN02948 phosphoribosylaminoim 22.5 2.4E+02 0.0052 32.6 7.3 52 35-86 425-476 (577)
492 TIGR02667 moaB_proteo molybden 22.4 6.1E+02 0.013 24.2 9.1 52 34-88 23-75 (163)
493 cd04722 TIM_phosphate_binding 22.3 4.6E+02 0.0099 23.9 8.1 51 146-197 13-68 (200)
494 PF13407 Peripla_BP_4: Peripla 22.2 1.3E+02 0.0029 29.3 4.6 43 146-191 43-85 (257)
495 TIGR00423 radical SAM domain p 22.1 9.1E+02 0.02 25.2 13.0 46 144-189 38-87 (309)
496 PF03932 CutC: CutC family; I 22.1 3E+02 0.0065 27.6 7.1 39 46-86 113-151 (201)
497 PF02638 DUF187: Glycosyl hydr 22.1 1.5E+02 0.0032 31.5 5.2 22 60-81 17-38 (311)
498 COG1082 IolE Sugar phosphate i 22.1 3.6E+02 0.0079 26.7 7.8 125 36-170 48-185 (274)
499 PF02548 Pantoate_transf: Keto 22.0 6.8E+02 0.015 26.3 9.8 177 48-274 15-198 (261)
500 PRK14072 6-phosphofructokinase 22.0 2E+02 0.0044 31.9 6.4 69 40-126 65-139 (416)
No 1
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-207 Score=1611.57 Aligned_cols=545 Identities=60% Similarity=1.013 Sum_probs=528.4
Q ss_pred hhhccCCC-cCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 10 WTAWWPTT-RHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 10 ~~~~~~~~-p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
.+||.... |.||+||||+||++.+.|+.+|+.+|+.+|+++||||||++|+++.|+.+|++|+++||+||||||||||.
T Consensus 39 ~dRm~~~g~P~FvdvTWgagG~ta~~s~~ias~~q~~~~v~t~mHlTCtn~~~~~Id~aLe~a~~~GirNILALRGDpP~ 118 (590)
T KOG0564|consen 39 MDRMSEGGPPTFVDVTWGAGGSTAELSLGIASSAQNVCGLETCMHLTCTNMPKEMIDKALEQAKALGIRNILALRGDPPI 118 (590)
T ss_pred HHHHHhcCCCeEEEEEecCCCCcccccHHHHHHHHHhcCccceeeeeccCccHHHHHHHHHHHHHhCchhhhhhcCCCCC
Confidence 34566444 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC
Q 008423 89 GQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY 168 (566)
Q Consensus 89 ~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff 168 (566)
+.+.|.+..++|+||+|||+|||++|||+|||||||||||||+..+. +++.|+.+||+|+||||||||||+||
T Consensus 119 g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~-------~~~~Dl~yLk~KvdaGaDFIiTQlFY 191 (590)
T KOG0564|consen 119 GQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSH-------DYLADLPYLKEKVDAGADFIITQLFY 191 (590)
T ss_pred CccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCccc-------chhhhhHHHHHhhcccchhhhhhhhc
Confidence 99999999999999999999999999999999999999999986553 36699999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423 169 DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA 248 (566)
Q Consensus 169 D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~ 248 (566)
|+|.|++|+++||++||++||+||||||++|++|.|++++||++||++++++|+++|+||++||++|+++++|||++|++
T Consensus 192 d~e~flkfv~~cR~~gi~~PIvPGIMPI~~Y~sf~R~~kls~~~IP~~~~~~L~piKddDeaVr~~Gvel~vemc~kll~ 271 (590)
T KOG0564|consen 192 DVETFLKFVKDCRAAGINVPIVPGIMPIQSYRSFLRIAKLSGVSIPQHLMDRLEPIKDDDEAVRNYGVELIVEMCRKLLD 271 (590)
T ss_pred CHHHHHHHHHHHHHhCCCCCcccccccchhHHHHHHHHHHhCCCCCHHHHHhcccCCCcHHHHHHHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCeEEEEcCCchHHHHHHHHHcCCCccc-ccccCCCCC-CCCCCCcccccccccccCCCCcccccCCCCCCCCCCCC
Q 008423 249 HG-IKTLHLYTLNMEKSALAILLNLGLIEES-KISRSLPWR-PPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGR 325 (566)
Q Consensus 249 ~G-v~GiHfyTlN~e~~v~~IL~~l~l~~~~-~~~~~~p~~-~~~~~~r~~e~vrpi~w~~r~~s~~~rt~~WdefPnGR 325 (566)
+| |+|+||||||+|+++.+||++||++... ...+.+||+ .+.+++|++|.||||||++||+|||+||++||||||||
T Consensus 272 ~g~v~~lHfyTlNlEksv~~IL~~lgll~~~~d~~~vlpw~~~s~~~~R~~e~vRpifw~sr~~syi~Rt~~WdefpnGR 351 (590)
T KOG0564|consen 272 SGVVPGLHFYTLNLEKSVAAILKRLGLLDELKDGDRVLPWRNKSANPKRTEEGVRPIFWASRPKSYISRTAQWDEFPNGR 351 (590)
T ss_pred cCccceeEEEEecHHHHHHHHHHhcCcccccccccccCCcccccCCccccccccccceeecCCccccccccccccCCCCC
Confidence 99 9999999999999999999999999873 224889999 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCCcCcCCCCCChHHHHHhcCCCCCCHhHHHHHHHHhhcCCcCCccCCCCCCCChhHHHHHHHHHHHHh
Q 008423 326 WGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINV 405 (566)
Q Consensus 326 ~gds~spafge~~~~~~~~~~~~~~~~~~~wg~p~~~~~di~~~f~~y~~g~~~~lPw~~~~~l~~et~~i~~~L~~ln~ 405 (566)
|||||||||||||+||+.+ |++++++++|||.| +|++||.++|++||+|+++|||||| .||++||++|++||++||+
T Consensus 352 ~GdsrSpAyGeld~y~~~~-~~~~~~~l~~Wg~p-~s~~dv~~~F~~y~~gk~s~lPWsd-~~l~~Et~lI~e~Ll~~N~ 428 (590)
T KOG0564|consen 352 WGDSRSPAYGELDDYGPRI-KVSKKKLLELWGVP-KSIEDVKELFIKYLEGKVSALPWSD-LPLQPETSLIKEQLLKLNR 428 (590)
T ss_pred cCCCCCccccccccccccc-cCCHHHHHHHhCCC-CCHHHHHHHHHHHHhCCcccccccc-CCCChhhHHHHHHHHhhcc
Confidence 9999999999999999777 99999999999999 9999999999999999999999999 9999999999999999999
Q ss_pred cCceeecCCCCCCCCCCCCCcccccCCCceeeeeeeeeeecChhhHHHHHHhhcCCCceeEEEEcCCCCccccCCCCCCc
Q 008423 406 KGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVN 485 (566)
Q Consensus 406 ~g~~ti~SQP~vng~~S~d~~~GwGp~~GyvyQKay~Eff~~~~~~~~l~~~~~~~~~~~y~a~n~~g~~~~n~~~~~~n 485 (566)
+|||||||||+|||+||+||+|||||+||||||||||||||+++.+++|++.++..++|||||+|++|.+.||.+..++|
T Consensus 429 ~g~lTinSQPavNg~~S~dpi~GWGp~~GyvyQKaylEfF~~k~~~~~l~~~~k~~~~vtY~a~n~~g~~~tn~~~~~~n 508 (590)
T KOG0564|consen 429 NGILTINSQPAVNGAPSSDPIFGWGPPGGYVYQKAYLEFFVSKELLDKLIEKLKALPSVTYHAVNKKGEFVTNADESDPN 508 (590)
T ss_pred CceEEecCCcccCCCcCCCCccccCCCCCeEeehhhhHHhcCHHHHHHHHHHHhcccceEEEEeccccccccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccCCCcccCceeeCcchhcchhHHHHHhcHHHHcccCCCCCchHHHHHHHhcceEEEEeecCCCC-CChhHHHhh
Q 008423 486 AVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYI-NGDLFAVFA 564 (566)
Q Consensus 486 avTWGvFpg~ei~qpTiv~~~sF~aWkdEaf~~w~~~W~~~y~~~s~s~~ll~~i~~~~~Lv~iv~~d~~-~~~l~~~l~ 564 (566)
|||||||||+||+||||||++||+|||||||+||. +||++||++|+||+||+++||+|||||||||||+ +++||++|+
T Consensus 509 AVTWGVFPgrEIiQpTIVd~~SF~aWkdEaf~iw~-eWa~ly~~~~pSr~ll~~v~~~y~LV~lVdnDf~~~~~l~~v~l 587 (590)
T KOG0564|consen 509 AVTWGVFPGREIIQPTIVDPVSFKAWKDEAFQIWS-EWANLYPEESPSRKLLESVHDDYCLVSLVDNDFINPDDLFDVLL 587 (590)
T ss_pred eeEeeccCCCccccceeechhHHHHHHHHHHHHHH-HHHHhCCCCChhHHHHHHHhhceEEEEEeccCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999 6999999999999999999999999999999999 799999875
Q ss_pred c
Q 008423 565 D 565 (566)
Q Consensus 565 ~ 565 (566)
+
T Consensus 588 ~ 588 (590)
T KOG0564|consen 588 D 588 (590)
T ss_pred h
Confidence 4
No 2
>PLN02540 methylenetetrahydrofolate reductase
Probab=100.00 E-value=1.7e-199 Score=1616.27 Aligned_cols=545 Identities=84% Similarity=1.381 Sum_probs=526.0
Q ss_pred chhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 9 GWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 9 ~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
-.++|-...|+||||||||||++++.|+++|+.+|+++|+++|+||||||+|+++|+++|++|+++||+||||||||||+
T Consensus 20 ~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~ 99 (565)
T PLN02540 20 RMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPH 99 (565)
T ss_pred HHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC
Q 008423 89 GQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY 168 (566)
Q Consensus 89 ~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff 168 (566)
.+++|.+++++|++|+|||++||++++++|||||||||||||++.+.+....+++++.|+++||+|++|||||||||+||
T Consensus 100 ~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfF 179 (565)
T PLN02540 100 GQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFY 179 (565)
T ss_pred CCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeecccc
Confidence 88888777899999999999999999999999999999999997654433345788889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423 169 DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA 248 (566)
Q Consensus 169 D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~ 248 (566)
|++.|++|+++||++||++|||||||||+|++++.|++++||+.||++++++|+++++|+++++++|++++++||++|++
T Consensus 180 D~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 180 DTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHcCCCcccccccCCCCCCCCCCCcccccccccccCCCCcccccCCCCCCCCCCCCCCC
Q 008423 249 HGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGD 328 (566)
Q Consensus 249 ~Gv~GiHfyTlN~e~~v~~IL~~l~l~~~~~~~~~~p~~~~~~~~r~~e~vrpi~w~~r~~s~~~rt~~WdefPnGR~gd 328 (566)
.|++||||||||++++|.+||++||+++.....+++|||+|++++|+.|+||||||+|||+|||+||++|||||||||||
T Consensus 260 ~Gv~GiHfYTlN~e~~v~~ILe~lgl~~~~~~~~~~~~~~s~~~~r~~~~~rpi~~~~~~~~~~~r~~~wdefpngr~gd 339 (565)
T PLN02540 260 HGIKGLHLYTLNLEKSALAILMNLGLIDESKVSRPLPWRPPTNVFRTKEDVRPIFWANRPKSYISRTTGWDQYPHGRWGD 339 (565)
T ss_pred cCCCEEEECccCChHHHHHHHHHcCCCCccccccCCCcCCCCCCCcccccccceeeccCCceeecccccccCCCCCCCCC
Confidence 99999999999999999999999999876555569999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCcCcCCCCCChHHHHHhcCCCCCCHhHHHHHHHHhhcCCcCCccCCCCCC-CChhHHHHHHHHHHHHhcC
Q 008423 329 SRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDG-LQPETKIINEQLGKINVKG 407 (566)
Q Consensus 329 s~spafge~~~~~~~~~~~~~~~~~~~wg~p~~~~~di~~~f~~y~~g~~~~lPw~~~~~-l~~et~~i~~~L~~ln~~g 407 (566)
||||||||||+||+.++|++++++++|||+||+|++||++||++||+|||++||||| .+ |++||++|+++|++||++|
T Consensus 340 s~spa~ge~~~~~~~~~~~~~~~~~~~wg~p~~~~~di~~~f~~~~~g~~~~lPw~~-~~~l~~et~~i~~~L~~ln~~g 418 (565)
T PLN02540 340 SRSPAYGALSDHQFMRPRARDKKLQAEWGVPLKSVEDVYEVFAKYCLGKLKSSPWSE-LDGLQPETKIINEQLVKINRKG 418 (565)
T ss_pred CCCCcccccccccccccCCCHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcCcCCCcC-CCCCChhHHHHHHHHHHHHhCC
Confidence 999999999999997669999999999999999999999999999999999999999 85 9999999999999999999
Q ss_pred ceeecCCCCCCCCCCCCCcccccCCCceeeeeeeeeeecChhhHHHHHHhhcCCCceeEEEEcCCCCccccCCCCCCcce
Q 008423 408 FLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAV 487 (566)
Q Consensus 408 ~~ti~SQP~vng~~S~d~~~GwGp~~GyvyQKay~Eff~~~~~~~~l~~~~~~~~~~~y~a~n~~g~~~~n~~~~~~nav 487 (566)
||||||||||||++|+||+|||||+|||||||||||||||+++++.|++++++++.|||||+|++|++.||.+.+++|||
T Consensus 419 ~~ti~SQP~vng~~s~d~~~gwgp~~g~v~qka~~e~f~~~~~~~~l~~~~~~~~~~~y~a~~~~g~~~~n~~~~~~nav 498 (565)
T PLN02540 419 FLTINSQPAVNGEKSDSPSVGWGGPGGYVYQKAYLEFFCSPEKLDALVEKCKAFPSLTYIAVNKAGEWISNVGPGDVNAV 498 (565)
T ss_pred eEeecCCcccCCCcCCCCCcccCCCCceEeEeeeEEEEcCHHHHHHHHHHhhcCCceEEEEEcCCCceecCCCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcccCceeeCcchhcchhHHHHHhcHHHHcccCCCCCchHHHHHHHhcceEEEEeecCCC
Q 008423 488 TWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 554 (566)
Q Consensus 488 TWGvFpg~ei~qpTiv~~~sF~aWkdEaf~~w~~~W~~~y~~~s~s~~ll~~i~~~~~Lv~iv~~d~ 554 (566)
|||||||||||||||||++||+|||||||+||.+||++||+++|+||+||++|+|+|||||||||||
T Consensus 499 twgvfp~~ei~qptiv~~~sf~aw~deaf~~w~~~w~~~y~~~s~s~~ll~~~~~~~~lv~~v~~d~ 565 (565)
T PLN02540 499 TWGVFPAKEIIQPTVVDPASFMVWKDEAFELWSSEWANLYPEGDPSRKLLEEIKDSYYLVSLVDNDY 565 (565)
T ss_pred eecCCCCCcccCCceecHHHHHHHHHHHHHHhHHHHHHhCCCCChHHHHHHHHhhCEEEEEEecCCC
Confidence 9999999999999999999999999999999987899999999999999999999999999999998
No 3
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=100.00 E-value=2.8e-67 Score=537.28 Aligned_cols=259 Identities=65% Similarity=1.046 Sum_probs=246.4
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
..++....|+|||||||+||++++.|+++|+.+|++.|+++|+|+|||++|+.+|++.|.+++++||+||||||||+|..
T Consensus 22 ~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~ 101 (281)
T TIGR00677 22 MDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHI 101 (281)
T ss_pred HHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 34556677999999999999999999999999999899999999999999999999999999999999999999999988
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD 169 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD 169 (566)
++++.++.++|++|.+||++||+.++++|+||||+|||+||++.+.+ .|+++|++|++|||||||||+|||
T Consensus 102 ~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~---------~d~~~L~~Ki~aGA~f~iTQ~~Fd 172 (281)
T TIGR00677 102 GDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVE---------LDLKYLKEKVDAGADFIITQLFYD 172 (281)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHH---------HHHHHHHHHHHcCCCEeeccceec
Confidence 87766667899999999999999888889999999999999987764 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 008423 170 TDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAH 249 (566)
Q Consensus 170 ~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~ 249 (566)
++.|.+|+++||++|+++||+|||||++|+++++++.++||+.||++++++|+.+++++++++++|++++++||++|++.
T Consensus 173 ~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~ 252 (281)
T TIGR00677 173 VDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLAS 252 (281)
T ss_pred HHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCCeEEEEcCCchHHHHHHHHHcCCCcc
Q 008423 250 GIKTLHLYTLNMEKSALAILLNLGLIEE 277 (566)
Q Consensus 250 Gv~GiHfyTlN~e~~v~~IL~~l~l~~~ 277 (566)
|++||||||||+++.+.+||+++|+.++
T Consensus 253 G~~giH~~t~n~~~~~~~il~~l~~~~~ 280 (281)
T TIGR00677 253 GIKGLHFYTLNLEKAALMILERLGLLDE 280 (281)
T ss_pred CCCeeEEeccCchHHHHHHHHHcCCCCC
Confidence 9999999999999999999999998764
No 4
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=100.00 E-value=9.8e-64 Score=508.62 Aligned_cols=252 Identities=43% Similarity=0.758 Sum_probs=238.4
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
..++....|+||+|||+++|++++.|+++|+.++++.|+++|+|+|||++|+.+|+++|++++++||+||||||||++..
T Consensus 21 ~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~ 100 (272)
T TIGR00676 21 VDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKG 100 (272)
T ss_pred HHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 45566667999999999999999999999999998899999999999999999999999999999999999999999987
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD 169 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD 169 (566)
++ +++.++|++|++||++|++.++ .|+||+|+||||||++.+.+ .++++|++|++|||+|||||+|||
T Consensus 101 ~~--~~~~~~f~~a~~Li~~i~~~~~-~f~ig~a~~Peghp~~~~~~---------~~~~~L~~K~~aGA~f~iTQ~~fd 168 (272)
T TIGR00676 101 EG--TPTPGGFNYASELVEFIRNEFG-DFDIGVAAYPEKHPEAPNLE---------EDIENLKRKVDAGADYAITQLFFD 168 (272)
T ss_pred CC--CCCCCCCCCHHHHHHHHHHhcC-CeeEEEEeCCCCCCCCCCHH---------HHHHHHHHHHHcCCCeEeeccccC
Confidence 65 3457899999999999998877 49999999999999987664 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 008423 170 TDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAH 249 (566)
Q Consensus 170 ~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~ 249 (566)
++.|.+|+++||++|+++||++||||++|++++.+|+++||+.||++++++|+++++++++++++|++++++||++|++.
T Consensus 169 ~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~ 248 (272)
T TIGR00676 169 NDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQCEDLIAE 248 (272)
T ss_pred HHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCeEEEEcCCchHHHHHHHHHcC
Q 008423 250 GIKTLHLYTLNMEKSALAILLNLG 273 (566)
Q Consensus 250 Gv~GiHfyTlN~e~~v~~IL~~l~ 273 (566)
|++|+||||||+++.+.+|+++||
T Consensus 249 g~~GiHl~t~n~~~~~~~il~~l~ 272 (272)
T TIGR00676 249 GVPGIHFYTLNRADATLEICENLG 272 (272)
T ss_pred CCCEEEEcCCCCHHHHHHHHHhhC
Confidence 999999999999999999999886
No 5
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=100.00 E-value=5.4e-63 Score=509.02 Aligned_cols=249 Identities=33% Similarity=0.568 Sum_probs=235.4
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
.+++....|+||+|||++||++++.+.++|+.++++.|+++|+|||||++|+.+|++.|++++++||+||||||||+|.+
T Consensus 45 ~~~l~~~~p~fvsVT~~~~~~~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~ 124 (296)
T PRK09432 45 IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPG 124 (296)
T ss_pred HHHHHhcCCCEEEEecCCCCcHHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 36778889999999999999999999999999988899999999999999999999999999999999999999999986
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD 169 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD 169 (566)
++ ..|.||.|||++||+. + .|+||||+|||+||++.+.+ .|+++||+|++|||+|||||+|||
T Consensus 125 ~~------~~~~~a~dLv~li~~~-~-~~~i~va~yPeghp~~~~~~---------~dl~~Lk~K~~aGA~~~iTQ~~Fd 187 (296)
T PRK09432 125 SG------KPEMYASDLVTLLKSV-A-DFDISVAAYPEVHPEAKSAQ---------ADLINLKRKVDAGANRAITQFFFD 187 (296)
T ss_pred CC------CCCcCHHHHHHHHHHh-C-CCccceeeCCCCCCCCCCHH---------HHHHHHHHHHHcCCCeeecccccc
Confidence 54 2367899999999975 4 49999999999999987665 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 008423 170 TDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAH 249 (566)
Q Consensus 170 ~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~ 249 (566)
++.|.+|+++||++|+++||+|||||++|++++.+++++||+.||++++++|+++++|+++++++|+++|.|||++|++.
T Consensus 188 ~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 188 VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred CCCeEEEEcCCchHHHHHHHHHcCCC
Q 008423 250 GIKTLHLYTLNMEKSALAILLNLGLI 275 (566)
Q Consensus 250 Gv~GiHfyTlN~e~~v~~IL~~l~l~ 275 (566)
|++||||||||+++.+.+|++++|+.
T Consensus 268 gv~GvH~yt~n~~~~~~~il~~l~l~ 293 (296)
T PRK09432 268 GVKDFHFYTLNRAELTYAICHTLGVR 293 (296)
T ss_pred CCCEEEEecCCChHHHHHHHHHhCCC
Confidence 99999999999999999999999973
No 6
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=100.00 E-value=7.3e-63 Score=505.18 Aligned_cols=255 Identities=40% Similarity=0.667 Sum_probs=223.2
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
..++....|+||+|||+++|+.+..|+.++..++++.|+++++||||||+|+++|++.|.+|+++||+||||||||+|..
T Consensus 33 ~~~l~~~~pd~vsVTd~~~~~~~~~s~~~a~~l~~~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~ 112 (287)
T PF02219_consen 33 AERLKDLGPDFVSVTDNPGGSSRMMSLLAAAKLLKETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKG 112 (287)
T ss_dssp HHHHHTT--SEEEE---GCGTTHHHHHHHHHHHHHHTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTT
T ss_pred HHHhcCCCCCEEEeecCCCCcccCCcHHHHHHHHHHhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 34566677999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD 169 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD 169 (566)
++++..+..+|.++.+||+.|++.+++.|+||+|+||++||++.+.+ .++++|++|++|||+|||||+|||
T Consensus 113 g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~---------~~~~~l~~Ki~aGA~f~iTQ~~fd 183 (287)
T PF02219_consen 113 GDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFE---------AELKRLKKKIDAGADFIITQPFFD 183 (287)
T ss_dssp SSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHH---------HHHHHHHHHHHTTESEEEEEE-SS
T ss_pred CccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHH---------HHHHHHHHHHHCCCCEEeccccCC
Confidence 88765556678889999999998888889999999999999877654 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 008423 170 TDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAH 249 (566)
Q Consensus 170 ~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~ 249 (566)
++.+.+|+++||+.|+++||+|||||++|++++++++++||+.||++++++|+.+++++++.+++|++++++||++|++.
T Consensus 184 ~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~Gv~iP~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~~ 263 (287)
T PF02219_consen 184 AEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLCGVDIPDELIERLEEAKDDPEAVREIGIEIAVELIRELLAE 263 (287)
T ss_dssp HHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHHT-EEEHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhccCccCCHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCchHHHHHHHHHcC
Q 008423 250 GIKTLHLYTLNMEKSALAILLNLG 273 (566)
Q Consensus 250 Gv~GiHfyTlN~e~~v~~IL~~l~ 273 (566)
|++||||||||+++.+.+||++||
T Consensus 264 gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 264 GVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp T-SEEEEEETTTSHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHcC
Confidence 999999999999999999999997
No 7
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=100.00 E-value=9.8e-60 Score=478.15 Aligned_cols=247 Identities=47% Similarity=0.764 Sum_probs=234.9
Q ss_pred CcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccc
Q 008423 17 TRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQI 96 (566)
Q Consensus 17 ~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~ 96 (566)
.|+||+|||+++|+++..|+.+|+.+++..|+++|+|+|||++|+.+|++.|.+++++||+|||+||||+|..+++|.+.
T Consensus 28 ~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~ 107 (274)
T cd00537 28 DPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAK 107 (274)
T ss_pred CCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCC
Confidence 49999999999999999999999999998899999999999999999999999999999999999999999988877665
Q ss_pred CCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHH
Q 008423 97 QGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKF 176 (566)
Q Consensus 97 ~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f 176 (566)
...|.+|.+||+++++.+++.|+||+|+|||+||++.+.+ .++++|++|++|||+|||||+|||++.|.+|
T Consensus 108 ~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~---------~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~ 178 (274)
T cd00537 108 PVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLE---------EDIKRLKRKVDAGADFIITQLFFDNDAFLRF 178 (274)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHH---------HHHHHHHHHHHCCCCEEeecccccHHHHHHH
Confidence 6778899999999999887789999999999999987654 8999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 008423 177 VNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHL 256 (566)
Q Consensus 177 ~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHf 256 (566)
+++||++|+++||++||||++|++++.+|+++||+.||++++++|+..++++++.++.|++++.+||++|++.|++|+||
T Consensus 179 ~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~~~~~l~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~giH~ 258 (274)
T cd00537 179 VDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDWLLERLEKLKDDAEAVRAEGIEIAAELCDELLEHGVPGIHF 258 (274)
T ss_pred HHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999998878888899999999999999999989999999
Q ss_pred EcCCchHHHHHHHHHc
Q 008423 257 YTLNMEKSALAILLNL 272 (566)
Q Consensus 257 yTlN~e~~v~~IL~~l 272 (566)
||||..+.+.+||+.+
T Consensus 259 ~t~n~~~~~~~il~~~ 274 (274)
T cd00537 259 YTLNREEATAEILENL 274 (274)
T ss_pred cCCCChHHHHHHHhcC
Confidence 9999999999999863
No 8
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-55 Score=450.94 Aligned_cols=245 Identities=40% Similarity=0.652 Sum_probs=226.7
Q ss_pred CCCcCEEEecCCCCC-CCchhHHHHHHHHHhhc-CCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Q 008423 15 PTTRHSATSRWGAGG-STADLTLDIANRMQNTI-CVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 92 (566)
Q Consensus 15 ~~~p~fVsVTwgagG-~~~~~Sl~la~~lq~~~-Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~ 92 (566)
...|.|++|||++|+ ++...|..++..++++. |.++||||||+|+|+.+|++.|++|+++||+|||||||||| .++.
T Consensus 43 ~~~p~~~svt~~d~~~~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~ 121 (291)
T COG0685 43 LLGPGFDSVTIPDGSRGTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPP-AGDK 121 (291)
T ss_pred hhCCceEEEEecCCCCCCCcccHHHHHHHHHhcCCCccceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCC-CCCC
Confidence 477899999999999 67777777777777777 55599999999999999999999999999999999999999 4443
Q ss_pred ccccCCC-cccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHH
Q 008423 93 FVQIQGG-FACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTD 171 (566)
Q Consensus 93 ~~~~~~~-F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d 171 (566)
.+. |.+|+|||++||+.+++.|+||+|+|||+||++.+.+ .|+.+||+|++|||||+|||+|||++
T Consensus 122 ----~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~---------~d~~~lkrKv~aGAd~~iTQ~~fd~e 188 (291)
T COG0685 122 ----PGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVK---------EDIKRLKRKVDAGADFFITQFFFDVE 188 (291)
T ss_pred ----CCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhH---------HHHHHHHHHHhcchHHHHHHHccCHH
Confidence 233 8899999999999888789999999999999976665 89999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 008423 172 MFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGI 251 (566)
Q Consensus 172 ~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv 251 (566)
.|.+|.++|+++|+++||+|||||++|++++.+++++||+.+|+++.++++ ..+|++..+..|+..+.++|.++...|
T Consensus 189 ~~~~~~~~~~~~g~~~pI~~Gimpi~~~~~~~~~~~~~~i~iP~~i~~r~~-~~~d~~~~~~~~~~~~~~~~~~l~~~~- 266 (291)
T COG0685 189 AFERFAERVRAAGIDIPIIPGIMPVTNFKQLLRFASLCGIKIPDEIIKRLE-LSDDPESRKLVGIAVAIDEVKDLVREG- 266 (291)
T ss_pred HHHHHHHHHHhcCCCCCeeecccccccHHHHHHHHHhcCCCChHHHHHHHh-ccCCchhhccchHHHHHHHHHHHhccC-
Confidence 999999999999999999999999999999999999999999999999999 778889999999999999999999998
Q ss_pred CeEEEEcCCchHHHHHHHHHcCCC
Q 008423 252 KTLHLYTLNMEKSALAILLNLGLI 275 (566)
Q Consensus 252 ~GiHfyTlN~e~~v~~IL~~l~l~ 275 (566)
.|+||||||+++.+.+|++.+|.+
T Consensus 267 ~~~H~y~ln~~~~~~~i~~~~~~~ 290 (291)
T COG0685 267 EGLHFYTLNREELTAAILELLGVL 290 (291)
T ss_pred CceEEEeCChHHHHHHHHHHhcCC
Confidence 999999999999999999999875
No 9
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=3.1e-51 Score=457.96 Aligned_cols=248 Identities=22% Similarity=0.326 Sum_probs=226.2
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQ 90 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~ 90 (566)
.++....||||+|||+++|++++.|+++|..+++.+|+++|+|+||+++|+.+|++.|.+++++||+||||||||||..+
T Consensus 345 ~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc~d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g 424 (612)
T PRK08645 345 KALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHITCRDRNLIGLQSHLLGLHALGIRNVLAITGDPAKVG 424 (612)
T ss_pred HHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEecCCCcCHHHHHHHHHHHHHcCCceEEEccCCCCCCC
Confidence 45556669999999999999999999999999998899999999999999999999999999999999999999999876
Q ss_pred CCccccCCCcc-cHHHHHHHHHHH------------cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHc
Q 008423 91 DKFVQIQGGFA-CALDLVKHIRSA------------YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDA 157 (566)
Q Consensus 91 ~~~~~~~~~F~-~A~dLVk~Ir~~------------~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdA 157 (566)
+++ .++++|+ +|.+||++||+. .+++|+||||+||+.+ +. +.|+++|++|++|
T Consensus 425 ~~~-~~~~vfd~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~~P~~~----~~---------~~d~~~L~~Ki~a 490 (612)
T PRK08645 425 DFP-GATSVYDLNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAFNPNVR----NL---------DKEVKRLEKKIEA 490 (612)
T ss_pred CCC-CCCCCccccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEeCCCCC----Ch---------HHHHHHHHHHHHc
Confidence 643 3568896 599999999983 1457999999999976 23 3899999999999
Q ss_pred CCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc-cCCCCCCHHHHHHhCCCCCCHHHHHHHHH
Q 008423 158 GADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG-FCKTKIPAEITAALEPIKDNEEAVKAYGI 236 (566)
Q Consensus 158 GAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~-l~Gv~VP~~il~~Le~~kddde~vk~~Gv 236 (566)
||||||||+|||++.|.+|+++|| ++++||||||||++|++++.+|.+ ++|+.||++++++|+..+ |+++++++|+
T Consensus 491 GAdf~iTQ~~fd~~~~~~~~~~~~--~~~vpIi~GImPi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~~~-d~~~~~~~gv 567 (612)
T PRK08645 491 GADYFITQPVYDEELIEELLEATK--HLGVPIFIGIMPLVSYRNAEFLHNEVPGITLPEEIRERMRAVE-DKEEAREEGV 567 (612)
T ss_pred CCCEEEecccCCHHHHHHHHHHHh--cCCCCEEEEeeecCCHHHHHHHHhCCCCCCCCHHHHHHHHhcC-CchHHHHHHH
Confidence 999999999999999999999999 688999999999999999999975 679999999999999988 6678899999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEc-CCchHHHHHHHHHcCCCc
Q 008423 237 HLGAEMCKKILAHGIKTLHLYT-LNMEKSALAILLNLGLIE 276 (566)
Q Consensus 237 ~la~e~i~~L~~~Gv~GiHfyT-lN~e~~v~~IL~~l~l~~ 276 (566)
++|++||++|++ |++|||||| ||+++.+.+|++++++-.
T Consensus 568 ~~a~e~i~~l~~-~v~Gvhl~t~~n~~~~~~~il~~l~~~~ 607 (612)
T PRK08645 568 AIARELIDAARE-YFNGIYLITPFLRYEMALELIKYIKSKQ 607 (612)
T ss_pred HHHHHHHHHHHh-hCCEEEEecccCcHHHHHHHHHHHHhhh
Confidence 999999999994 799999998 999999999999998754
No 10
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.09 E-value=0.0056 Score=60.62 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=72.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~ 136 (566)
|..+.++.....+.+.+.|++.|= ++=.- ..+.++|+.+++++++ ..||+..-
T Consensus 15 r~~~~~~a~~~~~al~~gGi~~iE-iT~~t--------------~~a~~~I~~l~~~~p~-~~vGAGTV----------- 67 (196)
T PF01081_consen 15 RGDDPEDAVPIAEALIEGGIRAIE-ITLRT--------------PNALEAIEALRKEFPD-LLVGAGTV----------- 67 (196)
T ss_dssp TTSSGGGHHHHHHHHHHTT--EEE-EETTS--------------TTHHHHHHHHHHHHTT-SEEEEES------------
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEE-EecCC--------------ccHHHHHHHHHHHCCC-CeeEEEec-----------
Confidence 455678888888999999999763 22110 1488999999999974 89998752
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHH
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFL 203 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~ 203 (566)
.+.+.+++=++|||+|++|- .||.+. ++.|+++| +|++||+|-.+-.....
T Consensus 68 ---------~~~e~a~~a~~aGA~FivSP-~~~~~v----~~~~~~~~--i~~iPG~~TptEi~~A~ 118 (196)
T PF01081_consen 68 ---------LTAEQAEAAIAAGAQFIVSP-GFDPEV----IEYAREYG--IPYIPGVMTPTEIMQAL 118 (196)
T ss_dssp ----------SHHHHHHHHHHT-SEEEES-S--HHH----HHHHHHHT--SEEEEEESSHHHHHHHH
T ss_pred ---------cCHHHHHHHHHcCCCEEECC-CCCHHH----HHHHHHcC--CcccCCcCCHHHHHHHH
Confidence 23556778889999999998 588877 46688777 99999998665544443
No 11
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.89 E-value=0.012 Score=58.55 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=99.0
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
.|..+.++.....+.+.+.||+.|= ++=+. ..+.+.|+.++++++ ...||+..-
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iE-it~~t--------------p~a~~~I~~l~~~~~-~~~vGAGTV---------- 63 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIE-ITLRT--------------PAALDAIRAVAAEVE-EAIVGAGTI---------- 63 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEE-EeCCC--------------ccHHHHHHHHHHHCC-CCEEeeEeC----------
Confidence 3566889999999999999999764 22111 138889999998886 488888752
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPA 215 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~ 215 (566)
.+.+.+++=++|||+|+||. .+|.+.+ +.|++.| +|.+||+|-++-.....+ .|.++
T Consensus 64 ----------l~~e~a~~ai~aGA~FivSP-~~~~~vi----~~a~~~~--i~~iPG~~TptEi~~A~~----~Ga~~-- 120 (201)
T PRK06015 64 ----------LNAKQFEDAAKAGSRFIVSP-GTTQELL----AAANDSD--VPLLPGAATPSEVMALRE----EGYTV-- 120 (201)
T ss_pred ----------cCHHHHHHHHHcCCCEEECC-CCCHHHH----HHHHHcC--CCEeCCCCCHHHHHHHHH----CCCCE--
Confidence 23455677789999999998 5888874 5588877 899999986554433332 22211
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH-HHHHHHHHHHcCCCeEEEEcCC--chHHHHHHHHH
Q 008423 216 EITAALEPIKDNEEAVKAYGIHL-GAEMCKKILAHGIKTLHLYTLN--MEKSALAILLN 271 (566)
Q Consensus 216 ~il~~Le~~kddde~vk~~Gv~l-a~e~i~~L~~~Gv~GiHfyTlN--~e~~v~~IL~~ 271 (566)
++ +-++. .+ -...++.|+.- .+++.|++-+ ..+.+.+.|+.
T Consensus 121 --vK-~FPa~-----------~~GG~~yikal~~p-lp~~~l~ptGGV~~~n~~~~l~a 164 (201)
T PRK06015 121 --LK-FFPAE-----------QAGGAAFLKALSSP-LAGTFFCPTGGISLKNARDYLSL 164 (201)
T ss_pred --EE-ECCch-----------hhCCHHHHHHHHhh-CCCCcEEecCCCCHHHHHHHHhC
Confidence 00 00000 01 02445555554 6778888776 34667777765
No 12
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.78 E-value=0.022 Score=57.43 Aligned_cols=120 Identities=13% Similarity=0.197 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHH---
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIR--- 111 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir--- 111 (566)
..++...+.+ .++-+| .|+.+.++.....+.+.+.||+.|= ++=..| .+.+.++.++
T Consensus 5 ~~~~~~~l~~-~~vi~V----vr~~~~~~a~~~~~al~~gGi~~iE-iT~~tp--------------~a~~~i~~l~~~~ 64 (222)
T PRK07114 5 RIAVLTAMKA-TGMVPV----FYHADVEVAKKVIKACYDGGARVFE-FTNRGD--------------FAHEVFAELVKYA 64 (222)
T ss_pred HHHHHHHHHh-CCEEEE----EEcCCHHHHHHHHHHHHHCCCCEEE-EeCCCC--------------cHHHHHHHHHHHH
Confidence 3445555554 344443 4567889999999999999999663 221111 2566666555
Q ss_pred -HHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE
Q 008423 112 -SAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 112 -~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII 190 (566)
++++ +..||+..-= +.+..++=++|||+|+||. .+|.+.+ +.|++.| +|++
T Consensus 65 ~~~~p-~~~vGaGTVl--------------------~~e~a~~a~~aGA~FiVsP-~~~~~v~----~~~~~~~--i~~i 116 (222)
T PRK07114 65 AKELP-GMILGVGSIV--------------------DAATAALYIQLGANFIVTP-LFNPDIA----KVCNRRK--VPYS 116 (222)
T ss_pred HhhCC-CeEEeeEeCc--------------------CHHHHHHHHHcCCCEEECC-CCCHHHH----HHHHHcC--CCEe
Confidence 3444 4889887522 2444566788999999998 6888774 5688776 8999
Q ss_pred eeecccCCHHHH
Q 008423 191 PGIMPINNYKGF 202 (566)
Q Consensus 191 pGImPI~s~~~~ 202 (566)
||+|-.+-....
T Consensus 117 PG~~TpsEi~~A 128 (222)
T PRK07114 117 PGCGSLSEIGYA 128 (222)
T ss_pred CCCCCHHHHHHH
Confidence 999855544333
No 13
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.76 E-value=0.022 Score=56.81 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=75.9
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
.|+.+.++.....+.+.+.||+.|=+ +=+. +.+.+.|+.++++|+ ...||+..-=
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEi-t~~t--------------~~a~~~i~~l~~~~~-~~~vGAGTVl--------- 68 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEV-TLRT--------------PVALDAIRLLRKEVP-DALIGAGTVL--------- 68 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEE-eCCC--------------ccHHHHHHHHHHHCC-CCEEEEEeCC---------
Confidence 35668899999999999999997642 2110 248899999999887 4888887522
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 202 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~ 202 (566)
+.+.+++=++|||+||||.- +|.+. ++.|++.| +|.+||+|-.+-....
T Consensus 69 -----------~~~~a~~a~~aGA~FivsP~-~~~~v----~~~~~~~~--i~~iPG~~TptEi~~A 117 (204)
T TIGR01182 69 -----------NPEQLRQAVDAGAQFIVSPG-LTPEL----AKHAQDHG--IPIIPGVATPSEIMLA 117 (204)
T ss_pred -----------CHHHHHHHHHcCCCEEECCC-CCHHH----HHHHHHcC--CcEECCCCCHHHHHHH
Confidence 24446677789999999985 57755 46688877 8999999855544333
No 14
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.67 E-value=0.023 Score=56.96 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=75.2
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEE-ecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEEEecCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLA-LRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITVAGYPEGHPDT 132 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILa-LrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGVAgyPEgHpe~ 132 (566)
.|..+.+......+.+.+.||+.+=+ +| . ..+.+.|+.+++++++ ..+||+..-
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~--~--------------~~a~~~i~~l~~~~~~~p~~~vGaGTV------- 75 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYT--N--------------PFASEVIKELVELYKDDPEVLIGAGTV------- 75 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECC--C--------------ccHHHHHHHHHHHcCCCCCeEEeeeeC-------
Confidence 34558889999999999999987742 21 1 1388999999998864 488988752
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCH
Q 008423 133 IGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNY 199 (566)
Q Consensus 133 ~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~ 199 (566)
.+.+.+++=++|||+|+||. .++.+.. +.|++.| +|++||.+-..-.
T Consensus 76 -------------~~~~~~~~a~~aGA~FivsP-~~~~~v~----~~~~~~~--i~~iPG~~T~~E~ 122 (213)
T PRK06552 76 -------------LDAVTARLAILAGAQFIVSP-SFNRETA----KICNLYQ--IPYLPGCMTVTEI 122 (213)
T ss_pred -------------CCHHHHHHHHHcCCCEEECC-CCCHHHH----HHHHHcC--CCEECCcCCHHHH
Confidence 22445677789999999986 7888774 5588776 8999998854433
No 15
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.56 E-value=0.18 Score=52.28 Aligned_cols=178 Identities=20% Similarity=0.168 Sum_probs=121.1
Q ss_pred CCCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHH
Q 008423 28 GGSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDL 106 (566)
Q Consensus 28 gG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dL 106 (566)
+|-+...++++++.+++...--++.-||+-|- =.-.++..+..|++.|+..+|+. |-| ++++-++
T Consensus 74 ~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp--DLP------------~ee~~~~ 139 (265)
T COG0159 74 AGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP--DLP------------PEESDEL 139 (265)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC--CCC------------hHHHHHH
Confidence 45566789999999996433336777888877 56789999999999999999953 333 3456677
Q ss_pred HHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC--------CHHHHHHHHH
Q 008423 107 VKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY--------DTDMFLKFVN 178 (566)
Q Consensus 107 Vk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff--------D~d~f~~f~~ 178 (566)
.+..+ ++|-.+-.=|+ | .+ ..++|++=.+++--|+.-+-.. +.+.+.+.++
T Consensus 140 ~~~~~-~~gi~~I~lva--P----tt--------------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~ 198 (265)
T COG0159 140 LKAAE-KHGIDPIFLVA--P----TT--------------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVK 198 (265)
T ss_pred HHHHH-HcCCcEEEEeC--C----CC--------------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHH
Confidence 76666 56643221121 2 11 1344444444444555444431 1223788999
Q ss_pred HHHHcCCCCcEEeeecccCCHHHHHHHhccC-CCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423 179 DCRQIGITCPIVPGIMPINNYKGFLRMTGFC-KTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA 248 (566)
Q Consensus 179 ~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~-Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~ 248 (566)
++|+.- ++||..|. .|.+..++.++.+.+ |+-|-..+++.++...+ +..++-+.+++++|++
T Consensus 199 ~vr~~~-~~Pv~vGF-GIs~~e~~~~v~~~ADGVIVGSAiV~~i~~~~~------~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 199 RVRKYT-DVPVLVGF-GISSPEQAAQVAEAADGVIVGSAIVKIIEEGLD------EEALEELRALVKELKA 261 (265)
T ss_pred HHHHhc-CCCeEEec-CcCCHHHHHHHHHhCCeEEEcHHHHHHHHhccc------hhhHHHHHHHHHHHHH
Confidence 999876 89999996 799999999887754 89999999999987543 3345556677777765
No 16
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.51 E-value=0.23 Score=51.03 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=112.7
Q ss_pred CCCCchhHHHHHHHHHhh-cCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHH
Q 008423 28 GGSTADLTLDIANRMQNT-ICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALD 105 (566)
Q Consensus 28 gG~~~~~Sl~la~~lq~~-~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~d 105 (566)
.|.+-...+++++.+++. ..++.+ ||+..|- -+-.+++.+..++++|+.-+++. |-| ++++.+
T Consensus 67 ~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp------------~ee~~~ 131 (256)
T TIGR00262 67 AGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLP------------LEESGD 131 (256)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CCC------------hHHHHH
Confidence 344445678888888865 577766 9999875 34577899999999999998865 222 345778
Q ss_pred HHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccC-------CCHHHHHHHHH
Q 008423 106 LVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLF-------YDTDMFLKFVN 178 (566)
Q Consensus 106 LVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf-------fD~d~f~~f~~ 178 (566)
+++.+++ +| +..+.+..|.-. .+.++.+.+. ..|..++||-.- |..+ ..++++
T Consensus 132 ~~~~~~~-~g--l~~i~lv~P~T~---------------~eri~~i~~~-~~gfiy~vs~~G~TG~~~~~~~~-~~~~i~ 191 (256)
T TIGR00262 132 LVEAAKK-HG--VKPIFLVAPNAD---------------DERLKQIAEK-SQGFVYLVSRAGVTGARNRAASA-LNELVK 191 (256)
T ss_pred HHHHHHH-CC--CcEEEEECCCCC---------------HHHHHHHHHh-CCCCEEEEECCCCCCCcccCChh-HHHHHH
Confidence 8888875 55 567778877542 1344444444 356677776222 3333 678889
Q ss_pred HHHHcCCCCcEEeeecccCCHHHHHHHhcc--CCCCCCHHHHHHhCC
Q 008423 179 DCRQIGITCPIVPGIMPINNYKGFLRMTGF--CKTKIPAEITAALEP 223 (566)
Q Consensus 179 ~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l--~Gv~VP~~il~~Le~ 223 (566)
++|+. .+.||+.|. .|.|...+.++.+. -|+-|-..+.+.++.
T Consensus 192 ~lr~~-~~~pi~vgf-GI~~~e~~~~~~~~GADgvVvGSaiv~~~~~ 236 (256)
T TIGR00262 192 RLKAY-SAKPVLVGF-GISKPEQVKQAIDAGADGVIVGSAIVKIIEE 236 (256)
T ss_pred HHHhh-cCCCEEEeC-CCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 99986 357999886 68888888887664 678888999999875
No 17
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.95 E-value=0.081 Score=53.04 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=104.8
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
++...+.+ .++-++ .|+.+.++.....+.+.+.||+.|= ++ . . -+++.+.|+.++++|++
T Consensus 7 ~~~~~l~~-~~~iaV----~r~~~~~~a~~i~~al~~~Gi~~iE-it--l-~-----------~~~~~~~I~~l~~~~p~ 66 (212)
T PRK05718 7 SIEEILRA-GPVVPV----IVINKLEDAVPLAKALVAGGLPVLE-VT--L-R-----------TPAALEAIRLIAKEVPE 66 (212)
T ss_pred HHHHHHHH-CCEEEE----EEcCCHHHHHHHHHHHHHcCCCEEE-Ee--c-C-----------CccHHHHHHHHHHHCCC
Confidence 34445553 344444 4577889999999999999999664 32 1 1 12489999999999974
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
..||+..-= +.+..++=++|||+|++|- .++.+. ++.|++.| +|.+||+|-.
T Consensus 67 -~~IGAGTVl--------------------~~~~a~~a~~aGA~FivsP-~~~~~v----i~~a~~~~--i~~iPG~~Tp 118 (212)
T PRK05718 67 -ALIGAGTVL--------------------NPEQLAQAIEAGAQFIVSP-GLTPPL----LKAAQEGP--IPLIPGVSTP 118 (212)
T ss_pred -CEEEEeecc--------------------CHHHHHHHHHcCCCEEECC-CCCHHH----HHHHHHcC--CCEeCCCCCH
Confidence 788877521 2344677778999999997 577755 34567665 8899999855
Q ss_pred CCHHHHHHH-hccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCC--chHHHHHHHHH
Q 008423 197 NNYKGFLRM-TGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLN--MEKSALAILLN 271 (566)
Q Consensus 197 ~s~~~~~r~-~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN--~e~~v~~IL~~ 271 (566)
+-.....++ ++..++ .|.... | -...++.|+.. .+++.|+.-+ ..+.+...++.
T Consensus 119 tEi~~a~~~Ga~~vKl-FPa~~~----------------g---g~~~lk~l~~p-~p~~~~~ptGGV~~~ni~~~l~a 175 (212)
T PRK05718 119 SELMLGMELGLRTFKF-FPAEAS----------------G---GVKMLKALAGP-FPDVRFCPTGGISPANYRDYLAL 175 (212)
T ss_pred HHHHHHHHCCCCEEEE-ccchhc----------------c---CHHHHHHHhcc-CCCCeEEEeCCCCHHHHHHHHhC
Confidence 543333332 111112 232210 0 13445556655 7788888877 44677777763
No 18
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.89 E-value=0.22 Score=49.60 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=74.4
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
.|+.+.+.+...++.+.+.||+. +=+|=+.+ .+.+.++.++++|++...||+..-=
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~-iEvt~~~~--------------~~~~~i~~l~~~~~~~~~iGaGTV~--------- 71 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRA-IEIPLNSP--------------DPFDSIAALVKALGDRALIGAGTVL--------- 71 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCE-EEEeCCCc--------------cHHHHHHHHHHHcCCCcEEeEEecC---------
Confidence 56779999999999999999984 44552111 2667888999889877889887532
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFL 203 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~ 203 (566)
+.+.++.=++|||+|++| +.+|.+.. +.|+..| +|++||.+ |...+.
T Consensus 72 -----------~~~~~~~a~~aGA~fivs-p~~~~~v~----~~~~~~~--~~~~~G~~---t~~E~~ 118 (206)
T PRK09140 72 -----------SPEQVDRLADAGGRLIVT-PNTDPEVI----RRAVALG--MVVMPGVA---TPTEAF 118 (206)
T ss_pred -----------CHHHHHHHHHcCCCEEEC-CCCCHHHH----HHHHHCC--CcEEcccC---CHHHHH
Confidence 244567777899999999 45777664 4566555 88999954 444443
No 19
>PLN02591 tryptophan synthase
Probab=95.21 E-value=2 Score=44.20 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=113.3
Q ss_pred CCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHH
Q 008423 29 GSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 107 (566)
Q Consensus 29 G~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLV 107 (566)
|.+-...+++++.++++..++.+ =||..|. -+-.+++.+..|+++|++.+++. |-| ++.+.+++
T Consensus 60 G~~~~~~~~~~~~~r~~~~~p~i-lm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--DLP------------~ee~~~~~ 124 (250)
T PLN02591 60 GTTLDSVISMLKEVAPQLSCPIV-LFTYYNPILKRGIDKFMATIKEAGVHGLVVP--DLP------------LEETEALR 124 (250)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEE-EEecccHHHHhHHHHHHHHHHHcCCCEEEeC--CCC------------HHHHHHHH
Confidence 33445678888888865565544 6677665 34589999999999999999965 332 34577777
Q ss_pred HHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc-------CCCHHHHHHHHHHH
Q 008423 108 KHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL-------FYDTDMFLKFVNDC 180 (566)
Q Consensus 108 k~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl-------ffD~d~f~~f~~~~ 180 (566)
+..++ +|-.+-.-|+ |.- . ++.++++.+. ..|-=+.|+-. -. .+.+.++++++
T Consensus 125 ~~~~~-~gl~~I~lv~--Ptt-------~--------~~ri~~ia~~-~~gFIY~Vs~~GvTG~~~~~-~~~~~~~i~~v 184 (250)
T PLN02591 125 AEAAK-NGIELVLLTT--PTT-------P--------TERMKAIAEA-SEGFVYLVSSTGVTGARASV-SGRVESLLQEL 184 (250)
T ss_pred HHHHH-cCCeEEEEeC--CCC-------C--------HHHHHHHHHh-CCCcEEEeeCCCCcCCCcCC-chhHHHHHHHH
Confidence 77764 6643322222 211 0 1223333322 34444555522 22 46678899999
Q ss_pred HHcCCCCcEEeeecccCCHHHHHHHhcc--CCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423 181 RQIGITCPIVPGIMPINNYKGFLRMTGF--CKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA 248 (566)
Q Consensus 181 R~~Gi~vPIIpGImPI~s~~~~~r~~~l--~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~ 248 (566)
|+. .++||+.|. .|.+..++.++.+. -|+-|-..+++.++... +.+ ..++-+.+++++|++
T Consensus 185 k~~-~~~Pv~vGF-GI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~-~~~----~~~~~~~~~~~~l~~ 247 (250)
T PLN02591 185 KEV-TDKPVAVGF-GISKPEHAKQIAGWGADGVIVGSAMVKALGEAK-SPE----EGLKRLEKLAKSLKA 247 (250)
T ss_pred Hhc-CCCceEEeC-CCCCHHHHHHHHhcCCCEEEECHHHHHhhhhcc-Chh----HHHHHHHHHHHHHHh
Confidence 986 489999996 79999999887765 58889999999886532 221 133445666666654
No 20
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.20 E-value=0.27 Score=49.43 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=69.3
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
++|+=+.+- +.++.....+.+.+.|++-|=+- -.=+.|.+.|+.++++++ +..||+..-
T Consensus 14 ~vI~Vlr~~--~~e~a~~~a~Ali~gGi~~IEIT---------------l~sp~a~e~I~~l~~~~p-~~lIGAGTV--- 72 (211)
T COG0800 14 PVVPVIRGD--DVEEALPLAKALIEGGIPAIEIT---------------LRTPAALEAIRALAKEFP-EALIGAGTV--- 72 (211)
T ss_pred CeeEEEEeC--CHHHHHHHHHHHHHcCCCeEEEe---------------cCCCCHHHHHHHHHHhCc-ccEEccccc---
Confidence 455555442 44555555566677888766321 011148999999999998 577776531
Q ss_pred CCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccC
Q 008423 129 HPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 129 Hpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
.+-+.+.+=++|||+|+|| +-++.+. ++.|...| +|++||+|-.+
T Consensus 73 -----------------L~~~q~~~a~~aGa~fiVs-P~~~~ev----~~~a~~~~--ip~~PG~~Tpt 117 (211)
T COG0800 73 -----------------LNPEQARQAIAAGAQFIVS-PGLNPEV----AKAANRYG--IPYIPGVATPT 117 (211)
T ss_pred -----------------cCHHHHHHHHHcCCCEEEC-CCCCHHH----HHHHHhCC--CcccCCCCCHH
Confidence 1234467778999999999 5667766 46677766 89999998443
No 21
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.95 E-value=2.5 Score=43.78 Aligned_cols=178 Identities=15% Similarity=0.215 Sum_probs=117.3
Q ss_pred CCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHH
Q 008423 29 GSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 107 (566)
Q Consensus 29 G~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLV 107 (566)
|.+-...+++++.++++..++.+ =+|..|. =.-.+++.+..|+++|++-+++- |- .++++.+++
T Consensus 73 g~~~~~~~~~~~~~r~~~~~p~v-lm~Y~N~i~~~G~e~F~~~~~~aGvdgviip--DL------------P~ee~~~~~ 137 (263)
T CHL00200 73 GINLNKILSILSEVNGEIKAPIV-IFTYYNPVLHYGINKFIKKISQAGVKGLIIP--DL------------PYEESDYLI 137 (263)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEE-EEecccHHHHhCHHHHHHHHHHcCCeEEEec--CC------------CHHHHHHHH
Confidence 33445578888888866666544 6666654 23488999999999999999843 21 245688888
Q ss_pred HHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC------CHHHHHHHHHHHH
Q 008423 108 KHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY------DTDMFLKFVNDCR 181 (566)
Q Consensus 108 k~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff------D~d~f~~f~~~~R 181 (566)
+.+++ +| +.......|.-. + +.++++.+.. .|=-++||-+-. -.+.+.++++++|
T Consensus 138 ~~~~~-~g--i~~I~lv~PtT~------~---------eri~~i~~~a-~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir 198 (263)
T CHL00200 138 SVCNL-YN--IELILLIAPTSS------K---------SRIQKIARAA-PGCIYLVSTTGVTGLKTELDKKLKKLIETIK 198 (263)
T ss_pred HHHHH-cC--CCEEEEECCCCC------H---------HHHHHHHHhC-CCcEEEEcCCCCCCCCccccHHHHHHHHHHH
Confidence 88874 66 455555656431 1 3444444332 233345554442 2466788999999
Q ss_pred HcCCCCcEEeeecccCCHHHHHHHhcc--CCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423 182 QIGITCPIVPGIMPINNYKGFLRMTGF--CKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA 248 (566)
Q Consensus 182 ~~Gi~vPIIpGImPI~s~~~~~r~~~l--~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~ 248 (566)
+. .++||..|. .|.+..++.++.+. -|+-|=..+++.++. ++. +..++-..+++++++.
T Consensus 199 ~~-t~~Pi~vGF-GI~~~e~~~~~~~~GADGvVVGSalv~~i~~--~~~----~~~~~~~~~~~~~~~~ 259 (263)
T CHL00200 199 KM-TNKPIILGF-GISTSEQIKQIKGWNINGIVIGSACVQILLG--SSP----EKGLDQLSEFCKVAKK 259 (263)
T ss_pred Hh-cCCCEEEEC-CcCCHHHHHHHHhcCCCEEEECHHHHHHHHh--cCh----hhHHHHHHHHHHHHHH
Confidence 84 589999996 79999999988876 589999999999974 121 1234445566666653
No 22
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=94.83 E-value=2.7 Score=43.58 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=108.3
Q ss_pred CCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHH
Q 008423 29 GSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 107 (566)
Q Consensus 29 G~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLV 107 (566)
|.+-..-+++++.+++..--.++.=||-.|. -+-.++..+..|+++|++.+++. | -.++.+.++.
T Consensus 68 G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip--D------------LP~ee~~~~~ 133 (259)
T PF00290_consen 68 GFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP--D------------LPPEESEELR 133 (259)
T ss_dssp T--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET--T------------SBGGGHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc--C------------CChHHHHHHH
Confidence 3344556788888883333334444554433 34578899999999999998853 2 2345677776
Q ss_pred HHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEec--cCC------CHHHHHHHHHH
Q 008423 108 KHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQ--LFY------DTDMFLKFVND 179 (566)
Q Consensus 108 k~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQ--lff------D~d~f~~f~~~ 179 (566)
+.++ ++|-. .|..+ -|.- .-+++++=.+.+..|+=.+ .-= ..+.+.+++++
T Consensus 134 ~~~~-~~gl~-~I~lv-~p~t------------------~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ 192 (259)
T PF00290_consen 134 EAAK-KHGLD-LIPLV-APTT------------------PEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKR 192 (259)
T ss_dssp HHHH-HTT-E-EEEEE-ETTS-------------------HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHH
T ss_pred HHHH-HcCCe-EEEEE-CCCC------------------CHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHH
Confidence 6655 46532 23222 2321 1233333333344554333 221 13678899999
Q ss_pred HHHcCCCCcEEeeecccCCHHHHHHHhc-cCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 008423 180 CRQIGITCPIVPGIMPINNYKGFLRMTG-FCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAH 249 (566)
Q Consensus 180 ~R~~Gi~vPIIpGImPI~s~~~~~r~~~-l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~ 249 (566)
+|+.. ++||..|+ .|.+..+++.+.. --|+-|-..+++.++...++. +.-++-..+++++|++.
T Consensus 193 ik~~~-~~Pv~vGF-GI~~~e~~~~~~~~aDGvIVGSa~v~~i~~~~~~~----~~~~~~~~~~~~~lk~~ 257 (259)
T PF00290_consen 193 IKKHT-DLPVAVGF-GISTPEQAKKLAAGADGVIVGSAFVKIIEENGDDA----EKFLKELKEFVRELKEA 257 (259)
T ss_dssp HHHTT-SS-EEEES-SS-SHHHHHHHHTTSSEEEESHHHHHHHHHTCCHH----HHHHHHHHHHHHHHHHT
T ss_pred HHhhc-CcceEEec-CCCCHHHHHHHHccCCEEEECHHHHHHHHHccccH----HHHHHHHHHHHHHHHHh
Confidence 99987 89999997 7999999988764 458899999999998633322 23455666777777764
No 23
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.73 E-value=1.9 Score=40.67 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC-ce--eEEEEecCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD-YF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd-~F--~IGVAgyPEgHpe~~~~~ 136 (566)
+.+.++..++.+.+.|++.|++.. ++++.+++..++ .. .+|+. .+.+-.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------------~~i~~~~~~~~~~~~~v~~~v~-~~~~~~------ 62 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------------GYVRLAADALAGSDVPVIVVVG-FPTGLT------ 62 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------------HHHHHHHHHhCCCCCeEEEEec-CCCCCC------
Confidence 888999999999999999888653 556666555443 22 33333 332210
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEEEec-cCC---C--HHHHHHHHHHHHHcC-CCCcEEeeecccCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLIITQ-LFY---D--TDMFLKFVNDCRQIG-ITCPIVPGIMPINN 198 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFiITQ-lff---D--~d~f~~f~~~~R~~G-i~vPIIpGImPI~s 198 (566)
..+.-++..++=.++|||++..- ++| + .+.+.++.+++.+.- ..+||++...|-.+
T Consensus 63 ------~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 63 ------TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred ------cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 12245666777788999998765 333 1 466677777777652 35899988887654
No 24
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=94.03 E-value=0.16 Score=55.00 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
-++.++|.+.+..+.+.|++.||.++|..|.. .+.|-.++++.|++.|+ ..+|-+-.-.|-++-+..
T Consensus 89 ~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~---------~~~y~~~~~~~ik~~~p-~~~i~a~s~~ei~~~~~~--- 155 (370)
T COG1060 89 TLSPEEILEEVREAVKRGITEVLIVGGEHPEL---------SLEYYEELFRTIKEEFP-DLHIHALSAGEILFLARE--- 155 (370)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEecCcCCCc---------chHHHHHHHHHHHHhCc-chhhcccCHHHhHHHHhc---
Confidence 45889999999999999999999999999853 23378899999999887 466655554444433211
Q ss_pred CCCccchHHHHHHHHHHHHcCCcE-EEeccCCCHHHH-----------HHHHHHHHHcC-CCCcEEeeec
Q 008423 138 VASNESYQSDLLYLKKKVDAGADL-IITQLFYDTDMF-----------LKFVNDCRQIG-ITCPIVPGIM 194 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlffD~d~f-----------~~f~~~~R~~G-i~vPIIpGIm 194 (566)
...+.++.+++|| +||.|- -.+|-=+-.+.+ ..|++..+.++ ..+|-..++|
T Consensus 156 --~~~s~~E~l~~Lk---~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml 220 (370)
T COG1060 156 --GGLSYEEVLKRLK---EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATML 220 (370)
T ss_pred --cCCCHHHHHHHHH---HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeE
Confidence 1234445688888 899984 466666655553 34565555433 2255555554
No 25
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.44 E-value=6.7 Score=39.83 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhhcCCceeEEeccc-cC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHH
Q 008423 34 LTLDIANRMQNTICVETMMHLTCT-NM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIR 111 (566)
Q Consensus 34 ~Sl~la~~lq~~~Gle~i~HLTCr-d~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir 111 (566)
..+++.+.+++...++ .|+=.. |. -...++..+..++++|+..+++. |-| +++..++++.+|
T Consensus 63 ~~~~~~~~vr~~~~~p--v~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip--Dl~------------~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKKNTIP--IVLMGYYNPILQYGLERFLRDAKEAGVDGLIIP--DLP------------PEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhcCCCC--EEEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC--CCC------------HHHHHHHHHHHH
Confidence 5677888888755555 354322 22 12346888999999999988864 322 235677888887
Q ss_pred HHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe-ccCCC-----HHHHHHHHHHHHHcCC
Q 008423 112 SAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT-QLFYD-----TDMFLKFVNDCRQIGI 185 (566)
Q Consensus 112 ~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT-QlffD-----~d~f~~f~~~~R~~Gi 185 (566)
+ +| ...+++..|.-. .+.++.+.+ ...|--+++| +..+- .+...+.++++|+. .
T Consensus 127 ~-~g--~~~i~~i~P~T~---------------~~~i~~i~~-~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~ 186 (242)
T cd04724 127 E-YG--LDLIFLVAPTTP---------------DERIKKIAE-LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-T 186 (242)
T ss_pred H-cC--CcEEEEeCCCCC---------------HHHHHHHHh-hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-C
Confidence 5 55 567777777532 133443332 2244455665 44442 24466788889986 5
Q ss_pred CCcEEeeecccCCHHHHHHHhc-cCCCCCCHHHHHHhCC
Q 008423 186 TCPIVPGIMPINNYKGFLRMTG-FCKTKIPAEITAALEP 223 (566)
Q Consensus 186 ~vPIIpGImPI~s~~~~~r~~~-l~Gv~VP~~il~~Le~ 223 (566)
++||..|- .|.+...+.++.+ .-|+-|=..+.+.++.
T Consensus 187 ~~pI~vgg-GI~~~e~~~~~~~~ADgvVvGSaiv~~~~~ 224 (242)
T cd04724 187 DLPIAVGF-GISTPEQAAEVAKYADGVIVGSALVKIIEE 224 (242)
T ss_pred CCcEEEEc-cCCCHHHHHHHHccCCEEEECHHHHHHHHh
Confidence 89999986 6888877776655 4467788889888865
No 26
>PRK05481 lipoyl synthase; Provisional
Probab=93.32 E-value=3.3 Score=43.30 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=69.3
Q ss_pred cCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEec
Q 008423 46 ICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGY 125 (566)
Q Consensus 46 ~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgy 125 (566)
+....+++..-+.++.+++.+.+..+.+.|++.|+++.||..... ..+..+-.+|++.|++..+. ..|.+ .+
T Consensus 67 C~FC~i~~~r~~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~------~~~~~~l~~Ll~~I~~~~p~-irI~~-l~ 138 (289)
T PRK05481 67 CPFCDVATGRPLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLP------DGGAQHFAETIRAIRELNPG-TTIEV-LI 138 (289)
T ss_pred CCCceeCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcc------cccHHHHHHHHHHHHhhCCC-cEEEE-Ec
Confidence 444444443324478899999999999999999999999854110 12344578889999875543 34433 33
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe----------cc--CCCHHHHHHHHHHHHHc
Q 008423 126 PEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT----------QL--FYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 126 PEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT----------Ql--ffD~d~f~~f~~~~R~~ 183 (566)
| |+.. ..+.|.+=++||++.+-- ++ -|+.+.+++.++.+++.
T Consensus 139 ~--~~~~--------------~~e~L~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~~le~i~~ar~~ 192 (289)
T PRK05481 139 P--DFRG--------------RMDALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKEL 192 (289)
T ss_pred c--CCCC--------------CHHHHHHHHhcCcceeeccccChHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 4 3321 123344444578875431 11 35666677777777766
No 27
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.88 E-value=8 Score=40.00 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=106.7
Q ss_pred CchhHHHHHHHHH-hhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHH
Q 008423 31 TADLTLDIANRMQ-NTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVK 108 (566)
Q Consensus 31 ~~~~Sl~la~~lq-~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk 108 (566)
+-...+++++.++ +...++.+ =+|..|. -.-.+++.++.|+++|++-+++. |-| ++.+.++++
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DLp------------~ee~~~~~~ 136 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIV-LMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DLP------------PEEAEELRA 136 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEE-EEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CCC------------HHHHHHHHH
Confidence 3345678888887 43455443 5666554 34488899999999999999973 332 345777777
Q ss_pred HHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE--EeccCC------CHHHHHHHHHHH
Q 008423 109 HIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI--ITQLFY------DTDMFLKFVNDC 180 (566)
Q Consensus 109 ~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQlff------D~d~f~~f~~~~ 180 (566)
..++ +|-..- .-+-|.- . ++.++.+.+ ....|| ++-.-. ..+.+.++++++
T Consensus 137 ~~~~-~gl~~I--~lvap~t------~---------~eri~~i~~---~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~v 195 (258)
T PRK13111 137 AAKK-HGLDLI--FLVAPTT------T---------DERLKKIAS---HASGFVYYVSRAGVTGARSADAADLAELVARL 195 (258)
T ss_pred HHHH-cCCcEE--EEeCCCC------C---------HHHHHHHHH---hCCCcEEEEeCCCCCCcccCCCccHHHHHHHH
Confidence 7764 664332 2233321 1 123333322 244454 444331 234567788999
Q ss_pred HHcCCCCcEEeeecccCCHHHHHHHhc-cCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423 181 RQIGITCPIVPGIMPINNYKGFLRMTG-FCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA 248 (566)
Q Consensus 181 R~~Gi~vPIIpGImPI~s~~~~~r~~~-l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~ 248 (566)
|+.. ++||+.|. .|.+...+.++.+ --|+-|=..+++.++.. . .+.+-+.+++++++.
T Consensus 196 k~~~-~~pv~vGf-GI~~~e~v~~~~~~ADGviVGSaiv~~~~~~-------~-~~~~~~~~~~~~l~~ 254 (258)
T PRK13111 196 KAHT-DLPVAVGF-GISTPEQAAAIAAVADGVIVGSALVKIIEEN-------P-EALEALAAFVKELKA 254 (258)
T ss_pred HhcC-CCcEEEEc-ccCCHHHHHHHHHhCCEEEEcHHHHHHHHhc-------c-hHHHHHHHHHHHHHH
Confidence 9865 79999986 7888888877665 34788888999888641 0 234555666666653
No 28
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.33 E-value=4 Score=39.67 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=71.9
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
.|+.+.+.+...++.+.+.|++.|- +|= +. . .+.+.++.+++.++ ...||+.....
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~ve-v~~---~~-------~----~~~~~i~~l~~~~~-~~~iGag~v~~-------- 65 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIE-ITL---RT-------P----GALEAIRALRKEFP-EALIGAGTVLT-------- 65 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEE-EeC---CC-------h----hHHHHHHHHHHHCC-CCEEEEEeCCC--------
Confidence 4566788899999999999999654 541 11 0 26668899998887 47888765321
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~ 205 (566)
.+++..=+++||+|+++. ..|. ...+.++..| +|++||++ |...+.+.
T Consensus 66 ------------~~~~~~a~~~Ga~~i~~p-~~~~----~~~~~~~~~~--~~~i~gv~---t~~e~~~A 113 (190)
T cd00452 66 ------------PEQADAAIAAGAQFIVSP-GLDP----EVVKAANRAG--IPLLPGVA---TPTEIMQA 113 (190)
T ss_pred ------------HHHHHHHHHcCCCEEEcC-CCCH----HHHHHHHHcC--CcEECCcC---CHHHHHHH
Confidence 334555667999999985 3454 3556677665 78999998 66665543
No 29
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.17 E-value=4 Score=42.65 Aligned_cols=142 Identities=16% Similarity=0.235 Sum_probs=81.6
Q ss_pred eccccCCHHHHHHHHH-------HHHHcCCCEEEEecCC---------CC--CCCCCcc-ccCCCcccHHHHHHHHHHHc
Q 008423 54 LTCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGD---------PP--HGQDKFV-QIQGGFACALDLVKHIRSAY 114 (566)
Q Consensus 54 LTCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGD---------pp--~~~~~~~-~~~~~F~~A~dLVk~Ir~~~ 114 (566)
..++.|+.++|++.++ .|.++|++-|=+=.|- |- +-.+.|- ...+......++|+.||+..
T Consensus 126 ~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~ 205 (327)
T cd02803 126 EPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV 205 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc
Confidence 3567788888776654 3467899988655441 11 1111110 01122334678899999999
Q ss_pred CCceeEEEEecCCCCCC-CCCCCCCCCccchHHHHHHHHHHH-HcCCcEEE------eccCC-------CHHHHHHHHHH
Q 008423 115 GDYFGITVAGYPEGHPD-TIGPDGVASNESYQSDLLYLKKKV-DAGADLII------TQLFY-------DTDMFLKFVND 179 (566)
Q Consensus 115 gd~F~IGVAgyPEgHpe-~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFiI------TQlff-------D~d~f~~f~~~ 179 (566)
|+.|.|++=..|...-. ..+. .+..++.+++ ++|+|||. +|... .......+++.
T Consensus 206 g~d~~i~vris~~~~~~~g~~~----------~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (327)
T cd02803 206 GPDFPVGVRLSADDFVPGGLTL----------EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEK 275 (327)
T ss_pred CCCceEEEEechhccCCCCCCH----------HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHH
Confidence 88899999888754321 1111 3444444443 57999985 33322 12344567777
Q ss_pred HHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 180 CRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 180 ~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
+++. +++||+.+ =-|.+...+.++.+
T Consensus 276 ir~~-~~iPVi~~-Ggi~t~~~a~~~l~ 301 (327)
T cd02803 276 IKKA-VKIPVIAV-GGIRDPEVAEEILA 301 (327)
T ss_pred HHHH-CCCCEEEe-CCCCCHHHHHHHHH
Confidence 7765 46887653 34566666655443
No 30
>PRK07360 FO synthase subunit 2; Reviewed
Probab=91.71 E-value=1.4 Score=47.63 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
.++.+++.+.++.+++.|++.|+++.|..|.. ..+++-.++++.||+.++ ...|.+..-.|-..-+.+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~--------~~~e~~~~~i~~ik~~~~-~i~i~a~s~~ei~~~~~~~-- 158 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAA--------DSLEFYLEILEAIKEEFP-DIHLHAFSPMEVYFAARED-- 158 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCC--------CcHHHHHHHHHHHHHhCC-CcceeeCCHHHHHHHHhhc--
Confidence 36889999999999999999999998865532 246778899999998765 2444432100000000000
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEE--eccC---------C----CHHHHHHHHHHHHHcCCC--CcEEeeecccCCHH
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLII--TQLF---------Y----DTDMFLKFVNDCRQIGIT--CPIVPGIMPINNYK 200 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiI--TQlf---------f----D~d~f~~f~~~~R~~Gi~--vPIIpGImPI~s~~ 200 (566)
....++.+++||+ ||+|.+. +.-+ + +.+..++-++.+++.|+. .=+|.|+ ..|..
T Consensus 159 ---G~~~~e~l~~Lke---AGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~--gEt~e 230 (371)
T PRK07360 159 ---GLSYEEVLKALKD---AGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGH--VETPE 230 (371)
T ss_pred ---CCCHHHHHHHHHH---cCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeC--CCCHH
Confidence 0111245666665 9999774 2221 1 334556666667777854 2345564 45554
No 31
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.51 E-value=1.7 Score=44.08 Aligned_cols=182 Identities=16% Similarity=0.170 Sum_probs=102.7
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec---CCCCCCCCCccccCCCcccHH-----HHHHHHHHHcCCceeE
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR---GDPPHGQDKFVQIQGGFACAL-----DLVKHIRSAYGDYFGI 120 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr---GDpp~~~~~~~~~~~~F~~A~-----dLVk~Ir~~~gd~F~I 120 (566)
-.|+|+||-+-+.+...+.+..+.+. -+++=|. -||..+|..- ......|. ++|+.+|+... .-+
T Consensus 5 ~~i~y~~~G~p~~~~~~~~~~~l~~~--ad~iElgip~sdp~adG~~i---~~~~~~a~~~g~~~~v~~vr~~~~--~Pl 77 (244)
T PRK13125 5 GLVVYLTAGYPNVESFKEFIIGLVEL--VDILELGIPPKYPKYDGPVI---RKSHRKVKGLDIWPLLEEVRKDVS--VPI 77 (244)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHhh--CCEEEECCCCCCCCCCCHHH---HHHHHHHHHcCcHHHHHHHhccCC--CCE
Confidence 36889999888888888877766554 3444442 2222222100 01122244 67788875432 223
Q ss_pred EEEe--cCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc-CCC-HHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 121 TVAG--YPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL-FYD-TDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 121 GVAg--yPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl-ffD-~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
..-+ +|. + .+ -.+++++=.++|||.++--. .|+ .+...++++.|++.|+. .++-+-|-
T Consensus 78 ~lM~y~n~~-~---~~------------~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~--~~~~v~p~ 139 (244)
T PRK13125 78 ILMTYLEDY-V---DS------------LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLK--PVFFTSPK 139 (244)
T ss_pred EEEEecchh-h---hC------------HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCC--EEEEECCC
Confidence 2223 331 2 11 13445666689999888763 356 56778999999999954 67777787
Q ss_pred CCHHHHHHHhcc------------CCCCCCHHHHHHhCCCC---CCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 008423 197 NNYKGFLRMTGF------------CKTKIPAEITAALEPIK---DNEEAVKAYGIHLGAEMCKKILAHGIKTLHL 256 (566)
Q Consensus 197 ~s~~~~~r~~~l------------~Gv~VP~~il~~Le~~k---ddde~vk~~Gv~la~e~i~~L~~~Gv~GiHf 256 (566)
++...+..+.+. .|..++..+.+.++.++ ++-.-.-+.||. ..+.++++++.|++|+=+
T Consensus 140 T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~-~~e~i~~~~~~gaD~vvv 213 (244)
T PRK13125 140 FPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD-SPEDARDALSAGADGVVV 213 (244)
T ss_pred CCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC-CHHHHHHHHHcCCCEEEE
Confidence 777666655431 23455666655554332 100000112221 347788888888888754
No 32
>PRK05927 hypothetical protein; Provisional
Probab=91.36 E-value=1.1 Score=48.22 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
++.+++.+.+..+++.|++.|++..|..|. -++++-.++++.||+.+++ ..+.+-.-.|-.-.+.+
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~---------~~~e~~~~~i~~ik~~~p~-l~~~~~s~~ei~~~~~~---- 141 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ---------LGIDYLEELVRITVKEFPS-LHPHFFSAVEIAHAAQV---- 141 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHCCC-CcccCCCHHHHHHHHHh----
Confidence 468899999999999999999998888764 2577899999999987642 32211110010000000
Q ss_pred CCccchHHHHHHHHHHHHcCCcEE---------------EeccCCCHHHHHHHHHHHHHcCCC--CcEEeeecccCCHH
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLI---------------ITQLFYDTDMFLKFVNDCRQIGIT--CPIVPGIMPINNYK 200 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFi---------------ITQlffD~d~f~~f~~~~R~~Gi~--vPIIpGImPI~s~~ 200 (566)
.....++.+++|| +||++.+ +|=-=+.++.-++.++.+++.|+. .=++.|+ ..|..
T Consensus 142 -~G~~~~e~l~~Lk---~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~--gEt~e 214 (350)
T PRK05927 142 -SGISTEQALERLW---DAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGH--VESPE 214 (350)
T ss_pred -cCCCHHHHHHHHH---HcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEee--CCCHH
Confidence 0123335666665 6788633 333344556666667777777853 3466676 55554
No 33
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=91.23 E-value=12 Score=39.97 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCceeEEe-------------------------ccccCCHHHHHHHHH-------HHHHcCCCEEEEecC
Q 008423 37 DIANRMQNTICVETMMHL-------------------------TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRG 84 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HL-------------------------TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrG 84 (566)
+++..++. .|-..+++| ..+.|+.++|++..+ .|+++|.+-|=+-.+
T Consensus 81 ~l~~~vh~-~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~a 159 (353)
T cd02930 81 LITDAVHA-EGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGS 159 (353)
T ss_pred HHHHHHHH-cCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 45556664 677777777 235577777765543 346799999986433
Q ss_pred ---------CCC--CCCCCcc-ccCCCcccHHHHHHHHHHHcCCceeEEEEecCC-CCCCCCCCCCCCCccchHHHHHHH
Q 008423 85 ---------DPP--HGQDKFV-QIQGGFACALDLVKHIRSAYGDYFGITVAGYPE-GHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 85 ---------Dpp--~~~~~~~-~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPE-gHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
.|. +-.++|- ..........++|+.||+..|..|.|++=-.+. .++...+. .+..++
T Consensus 160 hGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~----------~e~~~i 229 (353)
T cd02930 160 EGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW----------EEVVAL 229 (353)
T ss_pred cchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCH----------HHHHHH
Confidence 221 1111111 011224457888999999999889998766543 22221122 233333
Q ss_pred HHHH-HcCCcEEEe-c-----cC------CCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 152 KKKV-DAGADLIIT-Q-----LF------YDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 152 k~Kv-dAGAdFiIT-Q-----lf------fD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
.+.+ ++|+|++-. - .. +....+..+.+++|+. +++||+.+= -+.+...+.++.+
T Consensus 230 ~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G-~i~~~~~a~~~i~ 296 (353)
T cd02930 230 AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA-VDIPVIASN-RINTPEVAERLLA 296 (353)
T ss_pred HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh-CCCCEEEcC-CCCCHHHHHHHHH
Confidence 3333 479998733 1 21 1122345666777765 578877542 2556665555543
No 34
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=90.82 E-value=1.9 Score=45.91 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
-++.+++.+.+..+.+.|++.|....|+.|. ..+++..++++.|++.++ ...+.+-.-.|-+.-..+..
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~---------~~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g- 137 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPD---------LDGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSG- 137 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC---------CCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcC-
Confidence 3688999999999999999999999776652 245678999999998653 24443221111000000000
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEE--eccCCCH-------------HHHHHHHHHHHHcCCCC--cEEeeecccCCHH
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLII--TQLFYDT-------------DMFLKFVNDCRQIGITC--PIVPGIMPINNYK 200 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiI--TQlffD~-------------d~f~~f~~~~R~~Gi~v--PIIpGImPI~s~~ 200 (566)
...++.+++||+ ||.+-+. .+=+|+. +...+-++.++++|+.+ =+|.| || .|..
T Consensus 138 ----~~~~e~l~~Lke---AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G-~~-Et~e 208 (343)
T TIGR03551 138 ----LSVEEALKRLKE---AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYG-HV-ETPE 208 (343)
T ss_pred ----CCHHHHHHHHHH---hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEe-cC-CCHH
Confidence 011244565654 8998664 3445543 23345556666778642 34555 23 5554
No 35
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.55 E-value=5.7 Score=41.03 Aligned_cols=45 Identities=31% Similarity=0.433 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCcEEEeccCC----------------------CHHHHHHHHHHHHHcCCCCcEE
Q 008423 146 SDLLYLKKKVDAGADLIITQLFY----------------------DTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlff----------------------D~d~f~~f~~~~R~~Gi~vPII 190 (566)
.-++.++.-+++|||+|==++=| +.+.+.++++++|+...++|++
T Consensus 27 ~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 27 TSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 56777899999999999766666 4556677778887666677865
No 36
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.35 E-value=7 Score=41.50 Aligned_cols=140 Identities=17% Similarity=0.262 Sum_probs=80.5
Q ss_pred ccccCCHHHHHHHHH-------HHHHcCCCEEEEecCC---------CC--CCCCCcc-ccCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGD---------PP--HGQDKFV-QIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGD---------pp--~~~~~~~-~~~~~F~~A~dLVk~Ir~~~g 115 (566)
.++.|++++|++.++ .|+++|.+-|=+=.|- |- +-.+.|- ...+......+.|+.||+..|
T Consensus 135 ~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG 214 (338)
T cd04733 135 KPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG 214 (338)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 467788887766554 4567999999765553 21 1112221 012234457889999999999
Q ss_pred CceeEEEEecCCCCCC-CCCCCCCCCccchHHHHHHHHHHH-HcCCcEEE------eccCCC----------HHHHHHHH
Q 008423 116 DYFGITVAGYPEGHPD-TIGPDGVASNESYQSDLLYLKKKV-DAGADLII------TQLFYD----------TDMFLKFV 177 (566)
Q Consensus 116 d~F~IGVAgyPEgHpe-~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFiI------TQlffD----------~d~f~~f~ 177 (566)
+.|.|++=.+++.... ..+. .+...+.+.+ ++|+|+|- .|+.+. ...+..+.
T Consensus 215 ~d~~v~vris~~~~~~~g~~~----------eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (338)
T cd04733 215 PGFPVGIKLNSADFQRGGFTE----------EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFA 284 (338)
T ss_pred CCCeEEEEEcHHHcCCCCCCH----------HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHH
Confidence 8899999777632211 1111 2333333333 46999985 244432 11234566
Q ss_pred HHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 178 NDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 178 ~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
+++|++ +++||+.+= -|.+...+.++.
T Consensus 285 ~~ik~~-v~iPVi~~G-~i~t~~~a~~~l 311 (338)
T cd04733 285 EKIRKV-TKTPLMVTG-GFRTRAAMEQAL 311 (338)
T ss_pred HHHHHH-cCCCEEEeC-CCCCHHHHHHHH
Confidence 677765 468876652 456666555443
No 37
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=90.27 E-value=2.9 Score=45.17 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
++.++|.+.+..+.+.|++.|+.++|++|.. ..+++-.++++.|++.++ ..+| -.+|- +
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~--------~~~e~l~~~i~~Ik~~~p-~i~i--~~g~l------t---- 162 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAK--------VGVDYIRRALPIAREYFS-SVSI--EVQPL------S---- 162 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC--------CCHHHHHHHHHHHHHhCC-Ccee--ccCCC------C----
Confidence 5788999999999999999999999998742 357788899999987654 2233 22221 1
Q ss_pred CCccchHHHHHHHHHHHHcCCcE-EEeccCC---------------CHHHHHHHHHHHHHcCCC
Q 008423 139 ASNESYQSDLLYLKKKVDAGADL-IITQLFY---------------DTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---------------D~d~f~~f~~~~R~~Gi~ 186 (566)
.++++.|| +||++- -+.|=-| +.+.-++-++.++++|+.
T Consensus 163 ------~e~l~~Lk---~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 163 ------EEEYAELV---ELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred ------HHHHHHHH---HcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 13444443 689984 3334333 455555667777788864
No 38
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=90.20 E-value=6.8 Score=40.41 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc--eeEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY--FGITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~--F~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+++.++.+.+.|++.+++... .|+. ..-..+.-.+|++...+..+.. ..+||.+..
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~Gs----tGE~---~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~s---------- 81 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGS----TGEF---YSLTDEERKELLEIVVEAAAGRVPVIAGVGANS---------- 81 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESST----TTTG---GGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSS----------
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC----Cccc---ccCCHHHHHHHHHHHHHHccCceEEEecCcchh----------
Confidence 48899999999999999999997641 1221 1122333566777766544433 455655532
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEE-EeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLI-ITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||.+ ++.++| +.+.+.+|.+.+.++ .++||+.=-.|- .+|..
T Consensus 82 -------t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~-~~~pi~iYn~P~-----------~tg~~ 142 (289)
T PF00701_consen 82 -------TEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA-TDLPIIIYNNPA-----------RTGND 142 (289)
T ss_dssp -------HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH-SSSEEEEEEBHH-----------HHSST
T ss_pred -------HHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh-cCCCEEEEECCC-----------ccccC
Confidence 2245666666667999954 677875 778888888888765 468887544432 35667
Q ss_pred CCHHHHHHhCCC
Q 008423 213 IPAEITAALEPI 224 (566)
Q Consensus 213 VP~~il~~Le~~ 224 (566)
++.+.+.+|...
T Consensus 143 ls~~~l~~L~~~ 154 (289)
T PF00701_consen 143 LSPETLARLAKI 154 (289)
T ss_dssp SHHHHHHHHHTS
T ss_pred CCHHHHHHHhcC
Confidence 777776666543
No 39
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.99 E-value=24 Score=35.94 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCc-cccCCCcccHHHHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF-VQIQGGFACALDLVKHIR 111 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~-~~~~~~F~~A~dLVk~Ir 111 (566)
+.-+..+..+.+...++++..+.----+...+.+.+..+.+.|+.-|.+=-+..|+...+- ...--..+...+.|+.++
T Consensus 55 ~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~ 134 (243)
T cd00377 55 DEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAAR 134 (243)
T ss_pred HHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHH
Confidence 3345556666665667766666553337778888888888999999997655555431110 001112334666777776
Q ss_pred HHcCC--ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 112 SAYGD--YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 112 ~~~gd--~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
+.... +|.|=+-.--.... . ...++-++|.+.=.+||||.+.=-..++.+.+.++.+. ++.||
T Consensus 135 ~a~~~~~~~~IiARTDa~~~~-~---------~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~-----~~~Pl 199 (243)
T cd00377 135 DARDDLPDFVIIARTDALLAG-E---------EGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA-----PDVPL 199 (243)
T ss_pred HHHhccCCeEEEEEcCchhcc-C---------CCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc-----CCCCE
Confidence 65433 56554332111110 0 12347799999999999998776677798888877665 56898
Q ss_pred EeeecccC---CHHHHHH
Q 008423 190 VPGIMPIN---NYKGFLR 204 (566)
Q Consensus 190 IpGImPI~---s~~~~~r 204 (566)
+.-..|-. +.+.+.+
T Consensus 200 ~~~~~~~~~~~~~~~l~~ 217 (243)
T cd00377 200 NVNMTPGGNLLTVAELAE 217 (243)
T ss_pred EEEecCCCCCCCHHHHHH
Confidence 87776654 4444443
No 40
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.85 E-value=6.9 Score=39.77 Aligned_cols=137 Identities=19% Similarity=0.257 Sum_probs=86.4
Q ss_pred eeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe--cCCCCCCCCCcc-----ccCCCc--ccHHHHHHHHHHHcCCceeE
Q 008423 50 TMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL--RGDPPHGQDKFV-----QIQGGF--ACALDLVKHIRSAYGDYFGI 120 (566)
Q Consensus 50 ~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL--rGDpp~~~~~~~-----~~~~~F--~~A~dLVk~Ir~~~gd~F~I 120 (566)
.++|+|+-.-+.+.+.+.++.+.+.|+.-|-+= --||-.+|..=+ .-..++ ....++++.+|+... .-+
T Consensus 2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~--~pv 79 (242)
T cd04724 2 LIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNT--IPI 79 (242)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCC--CCE
Confidence 478999998899999999999999999877621 124433321100 001111 134667777876542 334
Q ss_pred EEEec--CCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe-ccCCCHHHHHHHHHHHHHcCCCCcEEeeecccC
Q 008423 121 TVAGY--PEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT-QLFYDTDMFLKFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 121 GVAgy--PEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT-QlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
.+..| |--+- -.-+++++=.++||+.++- -+ ..+...++++.||++|+. .++-+-|-+
T Consensus 80 ~lm~y~n~~~~~---------------G~~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~~--~i~~i~P~T 140 (242)
T cd04724 80 VLMGYYNPILQY---------------GLERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGLD--LIFLVAPTT 140 (242)
T ss_pred EEEEecCHHHHh---------------CHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCCc--EEEEeCCCC
Confidence 45445 31110 0134566667899996654 22 236788999999999954 677777888
Q ss_pred CHHHHHHHhc
Q 008423 198 NYKGFLRMTG 207 (566)
Q Consensus 198 s~~~~~r~~~ 207 (566)
+.+.+..+.+
T Consensus 141 ~~~~i~~i~~ 150 (242)
T cd04724 141 PDERIKKIAE 150 (242)
T ss_pred CHHHHHHHHh
Confidence 8877776665
No 41
>PRK07094 biotin synthase; Provisional
Probab=89.54 E-value=4.7 Score=42.18 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.+++.+.+..+.+.|++.|+...|+.+.. ..++..++++.|++..+ ..+.+ .+ +. .+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~---------~~~~l~~l~~~i~~~~~--l~i~~--~~-g~---~~----- 128 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYY---------TDEKIADIIKEIKKELD--VAITL--SL-GE---RS----- 128 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCC---------CHHHHHHHHHHHHccCC--ceEEE--ec-CC---CC-----
Confidence 677888888888899999999888875421 23457888888887533 22221 11 11 11
Q ss_pred CccchHHHHHHHHHHHHcCCcEEEe------c-------cCCCHHHHHHHHHHHHHcCCC
Q 008423 140 SNESYQSDLLYLKKKVDAGADLIIT------Q-------LFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiIT------Q-------lffD~d~f~~f~~~~R~~Gi~ 186 (566)
+++++.|+ +||++.+.. + .-.+.+...+-++.++++|+.
T Consensus 129 -----~e~l~~Lk---~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~ 180 (323)
T PRK07094 129 -----YEEYKAWK---EAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYE 180 (323)
T ss_pred -----HHHHHHHH---HcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe
Confidence 14555555 489886521 1 235666777777888888853
No 42
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.53 E-value=3.7 Score=42.58 Aligned_cols=191 Identities=15% Similarity=0.185 Sum_probs=113.0
Q ss_pred CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCCCCCcc-----ccCCCcc--cHHHHHHHHHHHcCC
Q 008423 48 VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP----PHGQDKFV-----QIQGGFA--CALDLVKHIRSAYGD 116 (566)
Q Consensus 48 le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDp----p~~~~~~~-----~~~~~F~--~A~dLVk~Ir~~~gd 116 (566)
.-.|+|+|+-+-+.+...+.+..+.+.|+.=| =| |=| -.+|..=+ .-..+++ ...++++.+|+...
T Consensus 15 ~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~i-El-GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~- 91 (263)
T CHL00200 15 CALIPFITAGDPDIVITKKALKILDKKGADII-EL-GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIK- 91 (263)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEE-EE-CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-
Confidence 35799999999999999999999999997543 33 433 22221000 0022332 35667777775432
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
..+-.-+|=+--. .. -.-+++++=.+||+|-+|---. -.+...+|.+.|++.|+ ..|+=|.|-
T Consensus 92 -~p~vlm~Y~N~i~---~~----------G~e~F~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi--~~I~lv~Pt 154 (263)
T CHL00200 92 -APIVIFTYYNPVL---HY----------GINKFIKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNI--ELILLIAPT 154 (263)
T ss_pred -CCEEEEecccHHH---Hh----------CHHHHHHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 3444666653210 00 1234577777899997665433 24667899999999995 467778888
Q ss_pred CCHHHHHHHhccCC-------------C--CCCHHHHHHhCCCCCCHHHHHHHHHHHH-HHHHHHHHHcCCCeEEEEc
Q 008423 197 NNYKGFLRMTGFCK-------------T--KIPAEITAALEPIKDNEEAVKAYGIHLG-AEMCKKILAHGIKTLHLYT 258 (566)
Q Consensus 197 ~s~~~~~r~~~l~G-------------v--~VP~~il~~Le~~kddde~vk~~Gv~la-~e~i~~L~~~Gv~GiHfyT 258 (566)
++.+.+.++++.+. . .++..+.+.++.++..-.....+|.-+. .|.++++.+.|++|+=+-+
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 88877776655332 2 3455554444322210000111233333 5778888888888876643
No 43
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=89.47 E-value=7.1 Score=41.03 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHH
Q 008423 26 GAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALD 105 (566)
Q Consensus 26 gagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~d 105 (566)
.+||-.+..+.+....+++...+|+|--.- +++ -.....+.++|++=| |-. +... -+-+
T Consensus 44 ~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K-~~~-----~~Ea~~L~eaGvDiI-----DaT---~r~r-------P~~~ 102 (283)
T cd04727 44 AAGGVARMADPKMIKEIMDAVSIPVMAKVR-IGH-----FVEAQILEALGVDMI-----DES---EVLT-------PADE 102 (283)
T ss_pred hcCCeeecCCHHHHHHHHHhCCCCeEEeee-hhH-----HHHHHHHHHcCCCEE-----ecc---CCCC-------cHHH
Confidence 467788889999999999888877765432 222 344456678999887 421 1111 1578
Q ss_pred HHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc-------------------
Q 008423 106 LVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL------------------- 166 (566)
Q Consensus 106 LVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl------------------- 166 (566)
+++.+|++|+--|--+++. +..-++-+++|||+|=|.+
T Consensus 103 ~~~~iK~~~~~l~MAD~st-----------------------leEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~ 159 (283)
T cd04727 103 EHHIDKHKFKVPFVCGARN-----------------------LGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNG 159 (283)
T ss_pred HHHHHHHHcCCcEEccCCC-----------------------HHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 9999999885445444443 3334667789999999997
Q ss_pred ------CCCHHHH----------HHHHHHHHHcCCCCcEE-eeecccCCHHHHHHHhc--cCCCCCCHHHH
Q 008423 167 ------FYDTDMF----------LKFVNDCRQIGITCPIV-PGIMPINNYKGFLRMTG--FCKTKIPAEIT 218 (566)
Q Consensus 167 ------ffD~d~f----------~~f~~~~R~~Gi~vPII-pGImPI~s~~~~~r~~~--l~Gv~VP~~il 218 (566)
-|+.+.. .++++++.+.. .+||+ ..+=.|.+...+.++.+ ..|+-|-..|.
T Consensus 160 ~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~ 229 (283)
T cd04727 160 EIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 229 (283)
T ss_pred HHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhh
Confidence 3333332 24566666643 58987 57777777777766554 23444554443
No 44
>PLN02591 tryptophan synthase
Probab=89.07 E-value=4.4 Score=41.75 Aligned_cols=187 Identities=14% Similarity=0.193 Sum_probs=107.5
Q ss_pred eeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCCCCCcc-----ccCCCcc--cHHHHHHHHHHHcCCce
Q 008423 50 TMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP----PHGQDKFV-----QIQGGFA--CALDLVKHIRSAYGDYF 118 (566)
Q Consensus 50 ~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDp----p~~~~~~~-----~~~~~F~--~A~dLVk~Ir~~~gd~F 118 (566)
.|+|+||-+-+.+...+.+..+.+.|+.= +=| |=| -.+|..=+ .-..+++ ...++++.+|++.. .
T Consensus 4 li~yi~aG~P~~e~~~~~~~~l~~~Gad~-iEl-GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~--~ 79 (250)
T PLN02591 4 FIPYITAGDPDLDTTAEALRLLDACGADV-IEL-GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLS--C 79 (250)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHCCCCE-EEE-CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC--C
Confidence 58999998889999999999898888754 333 433 22221000 0112222 35677777775432 3
Q ss_pred eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE-EEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccC
Q 008423 119 GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL-IITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 119 ~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
.+-.-+|=+--- .. -.-+.+++-.+||+|- ||--+-+ +....|.+.|+++|+ ..|+-+.|=+
T Consensus 80 p~ilm~Y~N~i~---~~----------G~~~F~~~~~~aGv~GviipDLP~--ee~~~~~~~~~~~gl--~~I~lv~Ptt 142 (250)
T PLN02591 80 PIVLFTYYNPIL---KR----------GIDKFMATIKEAGVHGLVVPDLPL--EETEALRAEAAKNGI--ELVLLTTPTT 142 (250)
T ss_pred CEEEEecccHHH---Hh----------HHHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHHcCC--eEEEEeCCCC
Confidence 444666654210 00 1234466666899984 5556654 777899999999994 4778777888
Q ss_pred CHHHHHHHhccC----------CC-----CCCHHHHHHhCCCCCCHHHHHHHHHHHH-HHHHHHHHHcCCCeEEEE
Q 008423 198 NYKGFLRMTGFC----------KT-----KIPAEITAALEPIKDNEEAVKAYGIHLG-AEMCKKILAHGIKTLHLY 257 (566)
Q Consensus 198 s~~~~~r~~~l~----------Gv-----~VP~~il~~Le~~kddde~vk~~Gv~la-~e~i~~L~~~Gv~GiHfy 257 (566)
+.+.+.++++.+ |+ .+|..+.+.++.+|.-.....-+|.-+. .+.++++++.|++|+=+-
T Consensus 143 ~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 143 PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 776666665433 21 3455544433322210000111222333 467777777777776553
No 45
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=89.04 E-value=6.3 Score=42.52 Aligned_cols=98 Identities=20% Similarity=0.377 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
++.++|.+.+..+.+.|++.|+.++|.+|.. ..+++-.++++.|++.++ ...|.+ +| - +
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~--------~~~e~l~eii~~Ik~~~p-~i~Iei--~~----l--t---- 161 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKA--------AGVEYIAEAIKLAREYFS-SLAIEV--QP----L--N---- 161 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC--------CCHHHHHHHHHHHHHhCC-cccccc--cc----C--C----
Confidence 3788999999999999999999998876642 356778899999987653 122222 22 1 1
Q ss_pred CCccchHHHHHHHHHHHHcCCcE-EEeccCCCHHHHH---------------HHHHHHHHcCCC
Q 008423 139 ASNESYQSDLLYLKKKVDAGADL-IITQLFYDTDMFL---------------KFVNDCRQIGIT 186 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdF-iITQlffD~d~f~---------------~f~~~~R~~Gi~ 186 (566)
.+++++|++ ||++. -+-|=-||.+.|. +-+++++++|+.
T Consensus 162 ------~e~~~~Lk~---aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 ------EEEYKKLVE---AGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred ------HHHHHHHHH---cCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 145666654 89984 4556666555543 355667778864
No 46
>PRK12928 lipoyl synthase; Provisional
Probab=88.58 E-value=4.4 Score=42.52 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
-++.+++.+.+..+.+.|++-|++..|+.... .++++.+-.+|++.|++..+. ..|.+ ..|+-.. .
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl------~d~g~~~~~ell~~Ik~~~p~-~~I~~-ltp~~~~--~---- 151 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDL------PDGGAAHFVATIAAIRARNPG-TGIEV-LTPDFWG--G---- 151 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcc------cccCHHHHHHHHHHHHhcCCC-CEEEE-ecccccc--C----
Confidence 36788999999999999999999888774211 124456678999999986653 56654 4552210 0
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEE----------ec--cCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLII----------TQ--LFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiI----------TQ--lffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
..+.|++=.+||++.+- -. .-++.+..++.++.+++.|-++++
T Consensus 152 ---------~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~ 206 (290)
T PRK12928 152 ---------QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPT 206 (290)
T ss_pred ---------CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 12224444468876432 01 125666666677777776633333
No 47
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=87.90 E-value=9.6 Score=37.06 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCC------CCCHHHHH
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT------KIPAEITA 219 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv------~VP~~il~ 219 (566)
..++++++=+ +.||+||.=+.|+-|.+......++++--++|+..+.+ |.-.+++++++=+. +-|..+++
T Consensus 46 ~~~~~~~~ai-a~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~---sapelm~lTrlG~f~m~~~~~g~~~~lK 121 (164)
T PF11965_consen 46 EALEECEAAI-ARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFE---SAPELMRLTRLGKFSMGGEKSGPPALLK 121 (164)
T ss_pred HHHHHHHHHH-HhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEc---CHHHHHHHhcccceecCCCCcchHHHHH
Confidence 4567787777 89999999999999999988888888755799888876 55566666665433 34456777
Q ss_pred HhC
Q 008423 220 ALE 222 (566)
Q Consensus 220 ~Le 222 (566)
++.
T Consensus 122 kl~ 124 (164)
T PF11965_consen 122 KLR 124 (164)
T ss_pred HHH
Confidence 775
No 48
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=87.88 E-value=4.2 Score=42.97 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV 122 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV 122 (566)
+.+++.+....+.+.|++.|++..||.+.-. .++..+-.++|+.|++..++ ..|.+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~------d~g~~~l~~li~~I~~~~p~-i~Iev 147 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLE------DGGASHLAECIEAIREKLPN-IKIET 147 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc------cccHHHHHHHHHHHHhcCCC-CEEEE
Confidence 5678888889999999999998888764221 24556678899999876543 55666
No 49
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=87.83 E-value=2.9 Score=43.77 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
-++.++|.+.+..+.+.|++.|....|+.|. ..+++..++++.|++.++
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~---------~~~~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQ---------LDIEYYEELFRAIKQEFP 83 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCC---------CCHHHHHHHHHHHHHHCC
Confidence 4688999999999999999999998777653 235567899999998754
No 50
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=87.66 E-value=5 Score=42.94 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV 122 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV 122 (566)
++.+++.+.+..+++.|++.|++..|+.|. ..+++..++++.|++.++ +..+.+
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~---------~~~~~~~e~i~~Ik~~~p-~i~i~~ 132 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPN---------LPFEWYLDMIRTLKEAYP-DLHVKA 132 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCC---------CCHHHHHHHHHHHHHHCC-CceEEe
Confidence 578899999999999999999999988763 236678999999998765 355544
No 51
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=87.61 E-value=16 Score=35.26 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=45.6
Q ss_pred chhhccCCCcCEEEe--cCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Q 008423 9 GWTAWWPTTRHSATS--RWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLA 81 (566)
Q Consensus 9 ~~~~~~~~~p~fVsV--TwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILa 81 (566)
....+-+...+.+-+ -+|+.-.....++++++.+++....++..|+.+.+. ...+..+.++|+.-|.+
T Consensus 16 ~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~-----~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 16 EVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP-----DRYIEDFAEAGADIITV 85 (210)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH-----HHHHHHHHHcCCCEEEE
Confidence 344455556666655 455443333357888888887666777799999863 35578888999987665
No 52
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=87.61 E-value=28 Score=33.62 Aligned_cols=116 Identities=9% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
.+...+.+.++.+.+.|++.|=+.--|.+-. ..+....++++.|++.....+.+++-.|+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~--------~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~----------- 68 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFV--------PNLTFGPPVLEALRKYTDLPIDVHLMVENP----------- 68 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC--------CCcccCHHHHHHHHhcCCCcEEEEeeeCCH-----------
Confidence 4567888999999999999998753443321 133356788999986544334466666631
Q ss_pred CCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHH
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~ 205 (566)
..+++.=.++|||.++....- .+...++++.+++.|+. ++.++-|-+....+..+
T Consensus 69 ---------~~~~~~~~~~gadgv~vh~~~-~~~~~~~~~~~~~~g~~--~~~~~~~~t~~e~~~~~ 123 (210)
T TIGR01163 69 ---------DRYIEDFAEAGADIITVHPEA-SEHIHRLLQLIKDLGAK--AGIVLNPATPLEFLEYV 123 (210)
T ss_pred ---------HHHHHHHHHcCCCEEEEccCC-chhHHHHHHHHHHcCCc--EEEEECCCCCHHHHHHH
Confidence 123444448999998876654 35667888999988854 45555565555555544
No 53
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.97 E-value=20 Score=37.07 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
..+.+.+.+.++.+.+.||+.|+++..- |+. ..-..+.-.++++...+..+ ..-.||.+ .+
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~Gst----GE~---~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~--------~~--- 76 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTT----GLG---PSLSFQEKLELLKAYSDITD-KVIFQVGS--------LN--- 76 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccC----CCc---ccCCHHHHHHHHHHHHHHcC-CEEEEeCc--------CC---
Confidence 4688999999999999999999977421 111 11122235667777666544 23333332 11
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEE-EeccCC----CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLI-ITQLFY----DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff----D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||.+ ++.++| +.+.+.+|.+.+.+ ++||+.==.|- ..|+.
T Consensus 77 ------~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iYn~P~-----------~tg~~ 136 (279)
T cd00953 77 ------LEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYNYPK-----------ATGYD 136 (279)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEEeCcc-----------ccCCC
Confidence 2245666666678999965 467765 35777788888776 58876543332 35666
Q ss_pred CCHHHHHHhC
Q 008423 213 IPAEITAALE 222 (566)
Q Consensus 213 VP~~il~~Le 222 (566)
++.+++.+|.
T Consensus 137 l~~~~l~~L~ 146 (279)
T cd00953 137 INARMAKEIK 146 (279)
T ss_pred CCHHHHHHHH
Confidence 7777777664
No 54
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=86.80 E-value=16 Score=38.05 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.++..++.+.+.||+.|+++. -- |+. ..-..+.=.++++...+..+... -+||.. .
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~G-st---GE~---~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~---~-------- 84 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAG-GT---GEF---FSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG---N-------- 84 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECC-CC---cCc---ccCCHHHHHHHHHHHHHHhCCCCcEEEecCc---c--------
Confidence 4889999999999999999999653 21 111 01111224556666555433332 334321 1
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcE-EEeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADL-IITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||. .++.++| +.+.+.+|.+.+.++ .++||+. |. .+|+.
T Consensus 85 -------t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a-~~~pvil-------Yn-------~~g~~ 142 (296)
T TIGR03249 85 -------TSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCES-TDLGVIV-------YQ-------RDNAV 142 (296)
T ss_pred -------HHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc-cCCCEEE-------Ee-------CCCCC
Confidence 113455556556789995 5666766 567788888887664 3678764 11 35778
Q ss_pred CCHHHHHHhC
Q 008423 213 IPAEITAALE 222 (566)
Q Consensus 213 VP~~il~~Le 222 (566)
+|.+++.+|.
T Consensus 143 l~~~~~~~La 152 (296)
T TIGR03249 143 LNADTLERLA 152 (296)
T ss_pred CCHHHHHHHH
Confidence 8888777775
No 55
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.57 E-value=5.7 Score=44.77 Aligned_cols=98 Identities=23% Similarity=0.357 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccch
Q 008423 65 DHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144 (566)
Q Consensus 65 ~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~ 144 (566)
.+.+..+.++|++-|.+ |...+ . =..+.++|+.||+.+++ ..|++ |+-. +
T Consensus 243 ~~~~~~l~~ag~d~i~i---d~a~G-~--------s~~~~~~i~~ik~~~~~-~~v~a-----G~V~--t---------- 292 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV---DSSQG-N--------SIYQIDMIKKLKSNYPH-VDIIA-----GNVV--T---------- 292 (495)
T ss_pred HHHHHHHHHCCCCEEEE---ecCCC-C--------chHHHHHHHHHHhhCCC-ceEEE-----CCcC--C----------
Confidence 45566677889887764 22221 1 12368899999998864 56655 2211 1
Q ss_pred HHHHHHHHHHHHcCCcEE----------EeccCCC-----HHHHHHHHHHHHHcCCCCcEEe--eecccC
Q 008423 145 QSDLLYLKKKVDAGADLI----------ITQLFYD-----TDMFLKFVNDCRQIGITCPIVP--GIMPIN 197 (566)
Q Consensus 145 ~~dl~~Lk~KvdAGAdFi----------ITQlffD-----~d~f~~f~~~~R~~Gi~vPIIp--GImPI~ 197 (566)
.+-.+.=++|||||| .|+.+.+ ...+.+..+.|++.| +|||+ ||.=..
T Consensus 293 ---~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~--v~vIadGGi~~~~ 357 (495)
T PTZ00314 293 ---ADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG--VPCIADGGIKNSG 357 (495)
T ss_pred ---HHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC--CeEEecCCCCCHH
Confidence 222334457999999 4554432 234445556666655 89999 986433
No 56
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.48 E-value=39 Score=34.54 Aligned_cols=130 Identities=12% Similarity=0.183 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGP 135 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~ 135 (566)
..+.+.+++.++.+.+.|++.|+++ |.- |+. ..-..+.-.++++.+++..+... -+||.+. +
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~-Gst---GE~---~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~--------~- 77 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVL-GTT---GEA---PTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN--------S- 77 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC-CCC---ccc---ccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc--------c-
Confidence 3478999999999999999999865 322 211 11222335677887776554333 3333221 1
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcE-EEeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADL-IITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT 211 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv 211 (566)
.++-++..+.=.++|||. ++..++| +.+.+.+|.+.+-++ .++||+.=-.|- .+|+
T Consensus 78 --------~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~~~pi~iYn~P~-----------~tg~ 137 (281)
T cd00408 78 --------TREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-SDLPVILYNIPG-----------RTGV 137 (281)
T ss_pred --------HHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEECcc-----------ccCC
Confidence 112344444445679995 5566666 557888888887775 568887543332 2456
Q ss_pred CCCHHHHHHhCC
Q 008423 212 KIPAEITAALEP 223 (566)
Q Consensus 212 ~VP~~il~~Le~ 223 (566)
.++.+++.+|..
T Consensus 138 ~l~~~~~~~L~~ 149 (281)
T cd00408 138 DLSPETIARLAE 149 (281)
T ss_pred CCCHHHHHHHhc
Confidence 666666666653
No 57
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=86.47 E-value=17 Score=37.51 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCcEEEeccCC----------------------CHHHHHHHHHHHHHcCCCCcEEeeecccCCH----
Q 008423 146 SDLLYLKKKVDAGADLIITQLFY----------------------DTDMFLKFVNDCRQIGITCPIVPGIMPINNY---- 199 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlff----------------------D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~---- 199 (566)
.-++.++.-+++|||+|==++=| +.+.+.+.++.+|+...++|++ +|-..|.
T Consensus 25 ~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv--~m~Y~Npi~~~ 102 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG--LLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE--EEEeccHHhhh
Confidence 55777888899999999776644 3456777888888766778977 4433332
Q ss_pred --HHHHHHhc---cCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCc-hHHHHHHHHHcC
Q 008423 200 --KGFLRMTG---FCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNM-EKSALAILLNLG 273 (566)
Q Consensus 200 --~~~~r~~~---l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN~-e~~v~~IL~~l~ 273 (566)
..|....+ ..|+-+|+.- .+...++++.+++.|+.=+.+.+-+- .+.+..|++...
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp------------------~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLP------------------LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCC------------------hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 23333333 3344566431 12234666777777777677777764 456666766653
No 58
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=86.43 E-value=30 Score=35.60 Aligned_cols=128 Identities=12% Similarity=0.134 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+++.++.+.+.|++.+++. |-- |+. ..-..+.=.++++...+..+..+ -+||.+..
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~-Gst---GE~---~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~---------- 80 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVC-GTT---GES---PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN---------- 80 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-CCC---cch---hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc----------
Confidence 488999999999999999999977 332 111 11223335667777666554333 34443311
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEEE-eccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLII-TQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||.++ +.+.| +.+.+.+|.+++-++ .++||+.==+|- .+|..
T Consensus 81 -------~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~~~pi~lYn~P~-----------~~g~~ 141 (284)
T cd00950 81 -------TAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-TDLPVILYNVPG-----------RTGVN 141 (284)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-CCCCEEEEEChh-----------HhCCC
Confidence 11335555555678999544 44555 557788888887765 578988554442 23555
Q ss_pred CCHHHHHHhC
Q 008423 213 IPAEITAALE 222 (566)
Q Consensus 213 VP~~il~~Le 222 (566)
++.+++++|.
T Consensus 142 ls~~~~~~L~ 151 (284)
T cd00950 142 IEPETVLRLA 151 (284)
T ss_pred CCHHHHHHHh
Confidence 5555555554
No 59
>PRK08508 biotin synthase; Provisional
Probab=86.32 E-value=11 Score=39.07 Aligned_cols=112 Identities=14% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLAL-RGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaL-rGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
++.+++.+.+..+++.|++.+..+ .|.... +..|++..++++.||+.+.. ..+- +. .|.. +
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~--------~~~~e~~~ei~~~ik~~~p~-l~i~-~s--~G~~---~--- 101 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD--------DKKLEYVAEAAKAVKKEVPG-LHLI-AC--NGTA---S--- 101 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC--------cccHHHHHHHHHHHHhhCCC-cEEE-ec--CCCC---C---
Confidence 588999999999999999999776 444221 23677899999999976532 3331 21 1221 1
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEE-----ec-----c--CCCHHHHHHHHHHHHHcCCC--CcEEeeecccCCHH
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLII-----TQ-----L--FYDTDMFLKFVNDCRQIGIT--CPIVPGIMPINNYK 200 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiI-----TQ-----l--ffD~d~f~~f~~~~R~~Gi~--vPIIpGImPI~s~~ 200 (566)
++.+++|| +||+|.+- ++ . -.+.+...+.++.++++|+. .-+|+|+ -.|.+
T Consensus 102 -------~e~l~~Lk---~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl--GEt~e 166 (279)
T PRK08508 102 -------VEQLKELK---KAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL--GESWE 166 (279)
T ss_pred -------HHHHHHHH---HcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec--CCCHH
Confidence 14455555 57886542 11 1 13445566677777888853 3456664 55554
No 60
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=85.93 E-value=26 Score=36.94 Aligned_cols=131 Identities=13% Similarity=0.167 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGP 135 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~ 135 (566)
..+.+.+.+.++.+.+.||+.|+++.. .|+. ..-..+.-.++++...+..+... -+||+++-
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v~Gs----tGE~---~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~--------- 88 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGT----FGEC---ATLTWEEKQAFVATVVETVAGRVPVFVGATTLN--------- 88 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcc----cccc---hhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCC---------
Confidence 358899999999999999999997641 1111 11223345667777666554433 44444321
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCc-EEEeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGAD-LIITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT 211 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAd-FiITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv 211 (566)
.++-++..+.=.++||| ..++.++| +.+.+.+|.+.+-++--++||+.==.| ..+|+
T Consensus 89 --------t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P-----------~~tg~ 149 (309)
T cd00952 89 --------TRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP-----------EAFKF 149 (309)
T ss_pred --------HHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc-----------hhcCC
Confidence 11345555555678999 56777776 557777777776554214787653223 23567
Q ss_pred CCCHHHHHHhCC
Q 008423 212 KIPAEITAALEP 223 (566)
Q Consensus 212 ~VP~~il~~Le~ 223 (566)
.+|.+++++|..
T Consensus 150 ~l~~~~l~~L~~ 161 (309)
T cd00952 150 DFPRAAWAELAQ 161 (309)
T ss_pred CCCHHHHHHHhc
Confidence 788888888754
No 61
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=85.77 E-value=6.8 Score=38.14 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHH
Q 008423 102 CALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCR 181 (566)
Q Consensus 102 ~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R 181 (566)
.+.+.|+.||+.+++ +.|++-. |-. ++. .. .+++=.++|||+|+++.+-......+.++.|+
T Consensus 38 ~g~~~i~~l~~~~~~-~~i~~d~----k~~--d~~---------~~--~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~ 99 (206)
T TIGR03128 38 EGIEAVKEMKEAFPD-RKVLADL----KTM--DAG---------EY--EAEQAFAAGADIVTVLGVADDATIKGAVKAAK 99 (206)
T ss_pred hCHHHHHHHHHHCCC-CEEEEEE----eec--cch---------HH--HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHH
Confidence 467889999988764 5555321 100 111 10 13333589999999998877666788899999
Q ss_pred HcCCCCcEEeeec-ccCCHHHHHH
Q 008423 182 QIGITCPIVPGIM-PINNYKGFLR 204 (566)
Q Consensus 182 ~~Gi~vPIIpGIm-PI~s~~~~~r 204 (566)
+.| ++++++++ |-+....+..
T Consensus 100 ~~g--~~~~~~~~~~~t~~~~~~~ 121 (206)
T TIGR03128 100 KHG--KEVQVDLINVKDKVKRAKE 121 (206)
T ss_pred HcC--CEEEEEecCCCChHHHHHH
Confidence 988 77888864 4443444443
No 62
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=85.17 E-value=11 Score=40.44 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=64.0
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKK 153 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~ 153 (566)
..++.|..-.|.|.--. -+.-.+|++.|++.+.+.-.|.+.++|+.-. . +.++.|++
T Consensus 55 ~~~~tiy~GGGTPs~L~---------~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt----~----------e~l~~lk~ 111 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLN---------DQLLDILLSTIKPYVDNNCEFTIECNPELIT----Q----------SQINLLKK 111 (353)
T ss_pred CCeEEEEECCCccccCC---------HHHHHHHHHHHHHhcCCCCeEEEEeccCcCC----H----------HHHHHHHH
Confidence 45788887777775421 1124567777877665445677778886431 1 34444544
Q ss_pred HHHcCCcEE--Eec-----------cCCCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHH
Q 008423 154 KVDAGADLI--ITQ-----------LFYDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFL 203 (566)
Q Consensus 154 KvdAGAdFi--ITQ-----------lffD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~ 203 (566)
+|...| =-| =-++.+.+.+-++.+|++|+. +-+|.|+ |=+|.+.+.
T Consensus 112 ---~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~Gl-Pgqt~e~~~ 173 (353)
T PRK05904 112 ---NKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCL-PILKLKDLD 173 (353)
T ss_pred ---cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecC-CCCCHHHHH
Confidence 677654 111 147788888899999999864 3457776 456666554
No 63
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=85.00 E-value=22 Score=36.49 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=86.1
Q ss_pred ccCCCcCEEEecCCCC----CC----CchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecC
Q 008423 13 WWPTTRHSATSRWGAG----GS----TADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84 (566)
Q Consensus 13 ~~~~~p~fVsVTwgag----G~----~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrG 84 (566)
+.....++|.|..+-- +. ......++.+.+++..++++..-++. +.+.+++.+.+..+.++|++-|.+..+
T Consensus 120 ~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 120 IERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP-YFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3344578888876521 11 12345678888887778888888886 567778888888899999988887543
Q ss_pred CCCCCCCC------ccccCCC---c---ccHHHHHHHHHHHcC-CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 85 DPPHGQDK------FVQIQGG---F---ACALDLVKHIRSAYG-DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 85 Dpp~~~~~------~~~~~~~---F---~~A~dLVk~Ir~~~g-d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
-.....+. .....++ + ..+.++|+.|++..+ +---|++.+.- + .+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~-------~-------------~~da 258 (289)
T cd02810 199 ISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID-------S-------------GEDV 258 (289)
T ss_pred cCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC-------C-------------HHHH
Confidence 22110000 0000111 1 236778888888764 22233333321 1 2234
Q ss_pred HHHHHcCCcE--EEeccCCC-HHHHHHHH
Q 008423 152 KKKVDAGADL--IITQLFYD-TDMFLKFV 177 (566)
Q Consensus 152 k~KvdAGAdF--iITQlffD-~d~f~~f~ 177 (566)
.+-+.+|||. +-|.++.| ++.+.++.
T Consensus 259 ~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 259 LEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 4555689995 56778888 88877654
No 64
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=84.93 E-value=2.9 Score=42.69 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=94.6
Q ss_pred ccchhhccCCCcCEEEecCCCCCC-----------CchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHH---HH
Q 008423 7 SSGWTAWWPTTRHSATSRWGAGGS-----------TADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQT---IK 72 (566)
Q Consensus 7 ~~~~~~~~~~~p~fVsVTwgagG~-----------~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~---a~ 72 (566)
++..+++.+...|.|+.-. -|-. +.+..+..-..++ +.|+.+++|+|- +.+.-.|...+.+ +.
T Consensus 100 E~~~eklk~~~vdvvsLDf-vgDn~vIk~vy~l~ksv~dyl~~l~~L~-e~~irvvpHiti-GL~~gki~~e~kaIdiL~ 176 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDF-VGDNDVIKRVYKLPKSVEDYLRSLLLLK-ENGIRVVPHITI-GLDFGKIHGEFKAIDILV 176 (275)
T ss_pred HHHHHHHHHhcCcEEEEee-cCChHHHHHHHcCCccHHHHHHHHHHHH-HcCceeceeEEE-EeccCcccchHHHHHHHh
Confidence 4445666666777776654 2211 1223444444555 589999999996 4544444333332 23
Q ss_pred HcCCCEEEEecCCCCCCCCCccc-cCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 73 SNGIQNVLALRGDPPHGQDKFVQ-IQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 73 ~~GIrNILaLrGDpp~~~~~~~~-~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
+.-+ ..|+|-+=-|..|..... .+...+.++.++++.|+.++....|||+- |.|. ...+-=
T Consensus 177 ~~~~-DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmr-P~Ge----------------~rvk~d 238 (275)
T COG1856 177 NYEP-DALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMR-PRGE----------------WRVKLD 238 (275)
T ss_pred cCCC-CeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecC-cCch----------------hHHHHH
Confidence 3333 345566666655544332 23445679999999999998889999973 5552 223334
Q ss_pred HHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcC
Q 008423 152 KKKVDAGADLIITQLFYDTDMFLKFVNDCRQIG 184 (566)
Q Consensus 152 k~KvdAGAdFiITQlffD~d~f~~f~~~~R~~G 184 (566)
++-++||.|-|- |-++....|.+.||..+
T Consensus 239 ~~av~~gVd~It----~P~~~t~e~ak~~r~i~ 267 (275)
T COG1856 239 KEAVLAGVDRIT----FPPRGTIEYAKSIRDIE 267 (275)
T ss_pred HHHHHcCCceee----cCCccceehhhhhhhhh
Confidence 666789999763 56677788888888654
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=84.90 E-value=21 Score=37.09 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe---cC---CCCCCCC----C--ccccCCCc
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL---RG---DPPHGQD----K--FVQIQGGF 100 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL---rG---Dpp~~~~----~--~~~~~~~F 100 (566)
....++.+.+++...+++...++. +.+++.+....+.++|++-|.+. .| |...... . +.......
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKl~~---~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (301)
T PRK07259 143 ELAYEVVKAVKEVVKVPVIVKLTP---NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIK 219 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCC---CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcc
Confidence 457788888888778888888875 33466677777889999888663 22 2211000 0 00001123
Q ss_pred ccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCCHHHHHHHHH
Q 008423 101 ACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYDTDMFLKFVN 178 (566)
Q Consensus 101 ~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD~d~f~~f~~ 178 (566)
..+.++++.|++..+- --||+.+.- +.+...+.+.+|||+ +-|.+++|++.+.++.+
T Consensus 220 p~~l~~v~~i~~~~~i-pvi~~GGI~--------------------~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 220 PIALRMVYQVYQAVDI-PIIGMGGIS--------------------SAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred cccHHHHHHHHHhCCC-CEEEECCCC--------------------CHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHH
Confidence 3478889989886542 244444421 123345556799996 56899999999888777
Q ss_pred HHH
Q 008423 179 DCR 181 (566)
Q Consensus 179 ~~R 181 (566)
.++
T Consensus 279 ~l~ 281 (301)
T PRK07259 279 GLE 281 (301)
T ss_pred HHH
Confidence 654
No 66
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.81 E-value=34 Score=35.36 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe---cC---CCCCC----CCC--ccccCCCc
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL---RG---DPPHG----QDK--FVQIQGGF 100 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL---rG---Dpp~~----~~~--~~~~~~~F 100 (566)
....++.+.+++..++++..-++. +.+.+.+....+.++|++-|-+. .| |.... +.. +.......
T Consensus 140 ~~~~eiv~~vr~~~~~Pv~vKl~~---~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 216 (296)
T cd04740 140 EAVAEIVKAVKKATDVPVIVKLTP---NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK 216 (296)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCC---CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence 456677888887668888888764 23456666777888999887653 12 22100 000 00001122
Q ss_pred ccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCCHHHHHHHHH
Q 008423 101 ACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYDTDMFLKFVN 178 (566)
Q Consensus 101 ~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD~d~f~~f~~ 178 (566)
..+.++++.+++..+- --||+.+.- +.+...+.+++|||. +-|.+++|++.+.++.+
T Consensus 217 ~~~~~~i~~i~~~~~i-pii~~GGI~--------------------~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 217 PIALRMVYQVYKAVEI-PIIGVGGIA--------------------SGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred hHHHHHHHHHHHhcCC-CEEEECCCC--------------------CHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence 3477889888876542 244444321 123356666799996 56899999999888766
Q ss_pred HHH
Q 008423 179 DCR 181 (566)
Q Consensus 179 ~~R 181 (566)
.+.
T Consensus 276 ~l~ 278 (296)
T cd04740 276 GLE 278 (296)
T ss_pred HHH
Confidence 654
No 67
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=84.61 E-value=14 Score=39.06 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHH
Q 008423 27 AGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDL 106 (566)
Q Consensus 27 agG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dL 106 (566)
.||-.++++.+....+++...+|+|-...- ++ -...+.+.++|++=| |-. + ...-+-++
T Consensus 47 ~ggv~R~~~p~~I~~I~~~V~iPVig~~ki-gh-----~~Ea~~L~~~GvDiI-----DeT---e-------~lrPade~ 105 (287)
T TIGR00343 47 SGGVARMSDPKMIKEIMDAVSIPVMAKVRI-GH-----FVEAQILEALGVDYI-----DES---E-------VLTPADWT 105 (287)
T ss_pred cCCeeecCCHHHHHHHHHhCCCCEEEEeec-cH-----HHHHHHHHHcCCCEE-----Ecc---C-------CCCcHHHH
Confidence 678889999999999999888888876442 22 333455678999888 422 1 11127888
Q ss_pred HHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc
Q 008423 107 VKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL 166 (566)
Q Consensus 107 Vk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl 166 (566)
+..+|++|+--|-.|+.. +..-.+-+++|||+|=|.+
T Consensus 106 ~~~~K~~f~vpfmad~~~-----------------------l~EAlrai~~GadmI~Tt~ 142 (287)
T TIGR00343 106 FHIDKKKFKVPFVCGARD-----------------------LGEALRRINEGAAMIRTKG 142 (287)
T ss_pred HHHHHHHcCCCEEccCCC-----------------------HHHHHHHHHCCCCEEeccc
Confidence 999998886556555543 3334667789999999984
No 68
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.55 E-value=28 Score=36.94 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=77.3
Q ss_pred ccccCCHHHHHHHHH-------HHHHcCCCEEEEecCC---------C--CCCCCCcc-ccCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGD---------P--PHGQDKFV-QIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGD---------p--p~~~~~~~-~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+++.|++++|+..+. .|+++|++-|=+=.|- | .+-.+.|- ..........++|+.||+..|
T Consensus 140 ~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 140 TPRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 357788877765543 4467899988654332 1 11111111 012234457889999999999
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCcEEE-e-------cc-CCCHHHHHHHHHHHHHcCC
Q 008423 116 DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGADLII-T-------QL-FYDTDMFLKFVNDCRQIGI 185 (566)
Q Consensus 116 d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFiI-T-------Ql-ffD~d~f~~f~~~~R~~Gi 185 (566)
+.|.|++=..|+.+-+. .. ++ .+..++.+.+ ++|.|||- + |. .+.......+.+.+|+. .
T Consensus 220 ~d~~v~vri~~~~~~~~-g~-------~~-~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-~ 289 (336)
T cd02932 220 EDKPLFVRISATDWVEG-GW-------DL-EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-A 289 (336)
T ss_pred CCceEEEEEcccccCCC-CC-------CH-HHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-C
Confidence 88999998777543211 00 11 2333333333 46899885 2 31 12122234566677764 4
Q ss_pred CCcEEeeecccCCHHHHHHH
Q 008423 186 TCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 186 ~vPIIpGImPI~s~~~~~r~ 205 (566)
++||+.+ =-|.+...+..+
T Consensus 290 ~iPVi~~-G~i~t~~~a~~~ 308 (336)
T cd02932 290 GIPVIAV-GLITDPEQAEAI 308 (336)
T ss_pred CCCEEEe-CCCCCHHHHHHH
Confidence 6887643 345555555543
No 69
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=84.44 E-value=14 Score=37.69 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCcc
Q 008423 63 KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNE 142 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~ 142 (566)
........+.+.|.++|.+|.+|.+-+. .....+.+.++ +.|-. .+....||.+ ..|
T Consensus 121 ~~~~~~~~l~~~~~~~v~~l~~~~~~g~----------~~~~~~~~~~~-~~G~~-v~~~~~~~~~---~~d-------- 177 (336)
T cd06360 121 WAAPMGKYAADDGYKKVVTVAWDYAFGY----------EVVEGFKEAFT-EAGGK-IVKELWVPFG---TSD-------- 177 (336)
T ss_pred HHHHHHHHHHHcCCCeEEEEeccchhhH----------HHHHHHHHHHH-HcCCE-EEEEEecCCC---Ccc--------
Confidence 3444555556788888888875543110 01112222333 23321 2233344433 122
Q ss_pred chHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC--CCcEEe
Q 008423 143 SYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGI--TCPIVP 191 (566)
Q Consensus 143 ~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi--~vPIIp 191 (566)
....+.+|+ ++++|.|+.- +.......|++.+++.|+ ++|++-
T Consensus 178 -~~~~v~~~~---~~~pd~v~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~ 222 (336)
T cd06360 178 -FASYLAQIP---DDVPDAVFVF--FAGGDAIKFVKQYDAAGLKAKIPLIG 222 (336)
T ss_pred -hHHHHHHHH---hcCCCEEEEe--cccccHHHHHHHHHHcCCccCCeEEe
Confidence 235566665 3689998853 334556789999999999 777764
No 70
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=84.41 E-value=37 Score=35.11 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+++.++.+.+.||+.|++. |-- |+. ..-..+.=.++++.+.+..+..+ -+||.+ .
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~-Gs~---GE~---~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~--~--------- 80 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVV-GTT---GES---PTLTHEEHEELIRAVVEAVNGRVPVIAGTGS--N--------- 80 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-CcC---Ccc---ccCCHHHHHHHHHHHHHHhCCCCcEEeecCC--c---------
Confidence 478999999999999999999975 322 111 11122234556777666544333 333332 1
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEEEe-ccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLIIT-QLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFiIT-Qlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
+.++-++..+.=.++|||.++. .++| +.+.+.+|.+++-++ .++||+.-=.|- .+|..
T Consensus 81 ------~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~-~~~pv~lYn~P~-----------~~g~~ 142 (292)
T PRK03170 81 ------STAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEA-TDLPIILYNVPG-----------RTGVD 142 (292)
T ss_pred ------hHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEECcc-----------ccCCC
Confidence 1123445455545689996544 5555 567788888877654 368887655552 23555
Q ss_pred CCHHHHHHhC
Q 008423 213 IPAEITAALE 222 (566)
Q Consensus 213 VP~~il~~Le 222 (566)
++.+++++|.
T Consensus 143 l~~~~~~~L~ 152 (292)
T PRK03170 143 ILPETVARLA 152 (292)
T ss_pred CCHHHHHHHH
Confidence 5555555554
No 71
>PRK08445 hypothetical protein; Provisional
Probab=84.14 E-value=8.9 Score=41.20 Aligned_cols=114 Identities=22% Similarity=0.220 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCC-CCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPE-GHPDTIGPDGV 138 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPE-gHpe~~~~~~~ 138 (566)
+.++|.+.+..+++.|++.|++..|++|. -++++-.++++.|++.+++ ..+ .+.++- -..-+ +
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~gg~~~~---------~~~e~~~~l~~~Ik~~~p~-i~~-~a~s~~ei~~~a-~---- 137 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQGGVHPK---------LKIEWYENLVSHIAQKYPT-ITI-HGFSAVEIDYIA-K---- 137 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCC---------CCHHHHHHHHHHHHHHCCC-cEE-EEccHHHHHHHH-H----
Confidence 67899999999999999999887788764 2466788999999998763 443 223331 00000 0
Q ss_pred CCccchHHHHHHHHHHHHcCCcEEE------------ecc---CCCHHHHHHHHHHHHHcCCC--CcEEee
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLII------------TQL---FYDTDMFLKFVNDCRQIGIT--CPIVPG 192 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFiI------------TQl---ffD~d~f~~f~~~~R~~Gi~--vPIIpG 192 (566)
+...+.++++++|| +||++-+. .++ .-..+..++-++.++++|+. .=+|.|
T Consensus 138 ~~~~~~~e~L~~Lk---eAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G 205 (348)
T PRK08445 138 ISKISIKEVLERLQ---AKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFG 205 (348)
T ss_pred HhCCCHHHHHHHHH---HcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEec
Confidence 00011124555555 57887432 233 44667777788888888854 234555
No 72
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=84.07 E-value=6.4 Score=41.59 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
-++.+++.+.++.+.+.|++.|++..|++|..
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~ 71 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDE 71 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCcc
Confidence 46899999999999999999999999999754
No 73
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.75 E-value=7.4 Score=41.63 Aligned_cols=129 Identities=17% Similarity=0.306 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhhcC-----CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-Cc--cccCCCc----
Q 008423 33 DLTLDIANRMQNTIC-----VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD-KF--VQIQGGF---- 100 (566)
Q Consensus 33 ~~Sl~la~~lq~~~G-----le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~-~~--~~~~~~F---- 100 (566)
....++++.+++..+ +++..=|+ -+.+.+++.+....+.++|++-|.+..+-....+. .. ....+++
T Consensus 192 ~~~~eiv~aVr~~~~~~~~~~PV~vKls-p~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~ 270 (344)
T PRK05286 192 EALDELLAALKEAQAELHGYVPLLVKIA-PDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRP 270 (344)
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEeC-CCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHH
Confidence 346678888888777 89999999 47777788888888999999888877654221100 00 0011222
Q ss_pred --ccHHHHHHHHHHHcCCceeE-EEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCC-HHHHH
Q 008423 101 --ACALDLVKHIRSAYGDYFGI-TVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYD-TDMFL 174 (566)
Q Consensus 101 --~~A~dLVk~Ir~~~gd~F~I-GVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD-~d~f~ 174 (566)
..+.+.|+.+++..+..+.| |+.|.- +.+...+.+.+|||. +-|.++++ +..+.
T Consensus 271 ~~~~~l~~v~~l~~~~~~~ipIig~GGI~--------------------s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~ 330 (344)
T PRK05286 271 LFERSTEVIRRLYKELGGRLPIIGVGGID--------------------SAEDAYEKIRAGASLVQIYSGLIYEGPGLVK 330 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCC--------------------CHHHHHHHHHcCCCHHHHHHHHHHhCchHHH
Confidence 34677888888776433433 333321 133345666799996 45777775 88887
Q ss_pred HHHHHHHH
Q 008423 175 KFVNDCRQ 182 (566)
Q Consensus 175 ~f~~~~R~ 182 (566)
+..+.+++
T Consensus 331 ~i~~~L~~ 338 (344)
T PRK05286 331 EIVRGLAR 338 (344)
T ss_pred HHHHHHHH
Confidence 77666553
No 74
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=83.40 E-value=17 Score=38.86 Aligned_cols=137 Identities=16% Similarity=0.278 Sum_probs=74.7
Q ss_pred cccCCHHHHHHHHH-------HHHHcCCCEEEEec--C-------CCCCC--CCCcc-ccCCCcccHHHHHHHHHHHcCC
Q 008423 56 CTNMPVEKIDHALQ-------TIKSNGIQNVLALR--G-------DPPHG--QDKFV-QIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 56 Crd~n~~~L~~~L~-------~a~~~GIrNILaLr--G-------Dpp~~--~~~~~-~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
|+.|+.++|++.++ .|+++|.+-|=+=. | .|-.. .+.+- ..........++|+.||+..|.
T Consensus 128 ~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 128 PKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 56788877776554 34679999886544 3 22111 11110 1122345578899999999998
Q ss_pred ceeEEEEecCCCC-CCCCCCCCCCCccchHHHHHHHHHHH-HcC-CcEE-Eecc---------------CCCHHHHHHHH
Q 008423 117 YFGITVAGYPEGH-PDTIGPDGVASNESYQSDLLYLKKKV-DAG-ADLI-ITQL---------------FYDTDMFLKFV 177 (566)
Q Consensus 117 ~F~IGVAgyPEgH-pe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAG-AdFi-ITQl---------------ffD~d~f~~f~ 177 (566)
.|.|++=-.++.. +...+. +|...+.+.+ ++| +|++ |+.- ++....+..+.
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~----------~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSP----------DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred CCeEEEEeehhhccCCCCCH----------HHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHH
Confidence 8999887655322 111111 3344444444 467 8977 4321 23333345666
Q ss_pred HHHHHcCCCCcEEeeecccCCHHHHHH
Q 008423 178 NDCRQIGITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 178 ~~~R~~Gi~vPIIpGImPI~s~~~~~r 204 (566)
+.+++. +++||+.. =-|.+...+.+
T Consensus 278 ~~ik~~-~~ipvi~~-G~i~~~~~~~~ 302 (343)
T cd04734 278 ARIKQA-VDLPVFHA-GRIRDPAEAEQ 302 (343)
T ss_pred HHHHHH-cCCCEEee-CCCCCHHHHHH
Confidence 677664 46776532 22344444433
No 75
>PRK08444 hypothetical protein; Provisional
Probab=83.33 E-value=3.6 Score=44.34 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV 122 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV 122 (566)
++.++|.+....+++.|++.|+.++|..|. ..|++-.++|+.||+.++ +..|++
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~---------~~~e~y~e~ir~Ik~~~p-~i~i~a 133 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPN---------YGYEWYLEIFKKIKEAYP-NLHVKA 133 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCC---------CCHHHHHHHHHHHHHHCC-CceEee
Confidence 577999999999999999999999997764 257788999999998765 355544
No 76
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=83.24 E-value=15 Score=38.92 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=91.9
Q ss_pred CCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHH
Q 008423 27 AGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDL 106 (566)
Q Consensus 27 agG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dL 106 (566)
.||-.++.+.+..+.+++...+|++.-... .--...+.+.++|++=| |-. + ...-+-++
T Consensus 54 ~gg~~Rm~~p~~I~aIk~~V~iPVigk~Ri------gh~~Ea~~L~~~GvDiI-----D~T---e-------~lrpad~~ 112 (293)
T PRK04180 54 AGGVARMADPKMIEEIMDAVSIPVMAKARI------GHFVEAQILEALGVDYI-----DES---E-------VLTPADEE 112 (293)
T ss_pred cCCeeecCCHHHHHHHHHhCCCCeEEeehh------hHHHHHHHHHHcCCCEE-----ecc---C-------CCCchHHH
Confidence 456677888888999998888877654332 21334455678999888 422 1 11126688
Q ss_pred HHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEec---------------------
Q 008423 107 VKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQ--------------------- 165 (566)
Q Consensus 107 Vk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQ--------------------- 165 (566)
+..+|++|+--|-.|+.. +..-.+-+++|||+|=|.
T Consensus 113 ~~~~K~~f~~~fmad~~~-----------------------l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~ 169 (293)
T PRK04180 113 YHIDKWDFTVPFVCGARN-----------------------LGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGE 169 (293)
T ss_pred HHHHHHHcCCCEEccCCC-----------------------HHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHH
Confidence 999998886555544443 334467788999999998
Q ss_pred ----cCCCHHHHH----------HHHHHHHHcCCCCcEE-eeecccCCHHHHHHHhc--cCCCCCCHHHH
Q 008423 166 ----LFYDTDMFL----------KFVNDCRQIGITCPIV-PGIMPINNYKGFLRMTG--FCKTKIPAEIT 218 (566)
Q Consensus 166 ----lffD~d~f~----------~f~~~~R~~Gi~vPII-pGImPI~s~~~~~r~~~--l~Gv~VP~~il 218 (566)
.-|+.+... ++++++++.+ .+||+ ..+=.|.|...+..+.+ ..|+-|-..|.
T Consensus 170 i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 170 IRRLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred HHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence 345544422 3556666643 68987 45555666666655544 33444555543
No 77
>PLN02417 dihydrodipicolinate synthase
Probab=83.09 E-value=28 Score=36.07 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+++.++.+.+.||+.|+++. - .|+. ..-..+.-.++++.+.+..+..+ -+||.++-
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~G-s---tGE~---~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~---------- 81 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGG-T---TGEG---QLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNS---------- 81 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-c---Ccch---hhCCHHHHHHHHHHHHHHhCCCCcEEEECCCcc----------
Confidence 4789999999999999999999663 1 1221 11122235667776655443322 33333211
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEE-EeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLI-ITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||.+ ++.++| +.+.+.+|.+.+.++. ||+.==.|- .+|+.
T Consensus 82 -------t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~---pi~lYn~P~-----------~tg~~ 140 (280)
T PLN02417 82 -------TREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG---PTIIYNVPG-----------RTGQD 140 (280)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC---CEEEEEChh-----------HhCcC
Confidence 1244555555567999964 455545 4477888888877653 775433332 24667
Q ss_pred CCHHHHHHhCC
Q 008423 213 IPAEITAALEP 223 (566)
Q Consensus 213 VP~~il~~Le~ 223 (566)
++.+++++|.+
T Consensus 141 l~~~~l~~l~~ 151 (280)
T PLN02417 141 IPPEVIFKIAQ 151 (280)
T ss_pred CCHHHHHHHhc
Confidence 77777777653
No 78
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=82.65 E-value=8.4 Score=43.23 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHc--CCce-eEEEEecCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAY--GDYF-GITVAGYPEGHPDTIGP 135 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~--gd~F-~IGVAgyPEgHpe~~~~ 135 (566)
++.++|.+....+++.|++.++++.|..|. ...+++-.++|+.|++.. ..+| .|++-..|- +
T Consensus 115 Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~--------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l------t- 179 (469)
T PRK09613 115 LTQEEIREEVKALEDMGHKRLALVAGEDPP--------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT------T- 179 (469)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCC--------CCCHHHHHHHHHHHHHhccccCcceeeEEEeecC------C-
Confidence 467889999999999999999999998763 235778889999998742 1123 455554441 1
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCc-EEEeccCCCHHHHHH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGAD-LIITQLFYDTDMFLK 175 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAd-FiITQlffD~d~f~~ 175 (566)
.+++++|| +||++ +.+=|=.|+.+.|.+
T Consensus 180 ---------~eey~~Lk---eaGv~~~~l~qETY~~ety~~ 208 (469)
T PRK09613 180 ---------VENYKKLK---EAGIGTYQLFQETYHKPTYEK 208 (469)
T ss_pred ---------HHHHHHHH---HcCCCEEEeccccCCHHHHHh
Confidence 14566664 58998 578888888877755
No 79
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=82.56 E-value=64 Score=33.42 Aligned_cols=129 Identities=10% Similarity=0.105 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSN-GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGP 135 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~-GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~ 135 (566)
.+.+.++..++.+.+. |++.|+++. ..|+. ..-..+.-.++++...+..+..+ -+||.+..
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~G----stGE~---~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~--------- 81 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNG----STGEG---FLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLN--------- 81 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECc----CCcCc---ccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCC---------
Confidence 4789999999999999 999988663 11221 11223345667777665544333 23333211
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEE-EeccCC---CHHHHHHHHHHHHHcCC-CCcEEeeecccCCHHHHHHHhccCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLI-ITQLFY---DTDMFLKFVNDCRQIGI-TCPIVPGIMPINNYKGFLRMTGFCK 210 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff---D~d~f~~f~~~~R~~Gi-~vPIIpGImPI~s~~~~~r~~~l~G 210 (566)
.++-++..+.=.++|||.+ ++.++| +.+.+.+|.+.+-++ . ++||+.==.|- ..|
T Consensus 82 --------~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a-~~~lpi~iYn~P~-----------~tg 141 (288)
T cd00954 82 --------LKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAA-AASLPMIIYHIPA-----------LTG 141 (288)
T ss_pred --------HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCcc-----------ccC
Confidence 1133454555568899975 478888 557777877776543 3 57876543332 246
Q ss_pred CCCCHHHHHHhCC
Q 008423 211 TKIPAEITAALEP 223 (566)
Q Consensus 211 v~VP~~il~~Le~ 223 (566)
+.++.+++.+|..
T Consensus 142 ~~l~~~~~~~L~~ 154 (288)
T cd00954 142 VNLTLEQFLELFE 154 (288)
T ss_pred CCCCHHHHHHHhc
Confidence 6666666666643
No 80
>PRK09234 fbiC FO synthase; Reviewed
Probab=82.24 E-value=17 Score=43.82 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
++.++|.+....|++.|++.|+.+.|..|. -.+++-.++++.||+.++
T Consensus 557 Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~---------~~~~~y~~lir~IK~~~p 604 (843)
T PRK09234 557 LSLDEVADRAWEAWVAGATEVCMQGGIHPE---------LPGTGYADLVRAVKARVP 604 (843)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCC---------cCHHHHHHHHHHHHHhCC
Confidence 577888889999999999999999886653 235677899999998775
No 81
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=82.14 E-value=46 Score=34.59 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.++..++.+.+.||+.|+++.. .|+. ..-..+.=.+|++...+..+..+ -+|+.+ .
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~Gs----tGE~---~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~---~-------- 79 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGG----TGEF---FSLTPDEYAQVVRAAVEETAGRVPVLAGAGY---G-------- 79 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC----CcCc---ccCCHHHHHHHHHHHHHHhCCCCCEEEecCC---C--------
Confidence 47899999999999999999997642 1221 11122234667777665543333 333321 1
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcE-EEeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADL-IITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||. .++.++| +.+.+.+|.+.+-++ .++||+.= + .+|+.
T Consensus 80 -------t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~-~~~pi~lY-----n---------~~g~~ 137 (289)
T cd00951 80 -------TATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKS-TDLGVIVY-----N---------RANAV 137 (289)
T ss_pred -------HHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc-CCCCEEEE-----e---------CCCCC
Confidence 113455556667789996 5556666 557778877777654 35776542 1 25667
Q ss_pred CCHHHHHHhCC
Q 008423 213 IPAEITAALEP 223 (566)
Q Consensus 213 VP~~il~~Le~ 223 (566)
+|.+++.+|..
T Consensus 138 l~~~~l~~L~~ 148 (289)
T cd00951 138 LTADSLARLAE 148 (289)
T ss_pred CCHHHHHHHHh
Confidence 77777777753
No 82
>PRK15108 biotin synthase; Provisional
Probab=81.96 E-value=11 Score=40.47 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
++.++|.+....+.+.|++.|...+|.... ....|++-.++++.||+ .+- .+.+ + .|. -+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-------~~~~~e~i~~~i~~ik~-~~i--~v~~--s-~G~---ls---- 135 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNP-------HERDMPYLEQMVQGVKA-MGL--ETCM--T-LGT---LS---- 135 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCC-------CcchHHHHHHHHHHHHh-CCC--EEEE--e-CCc---CC----
Confidence 477888888888889999999765553100 12357789999999985 442 2322 1 111 01
Q ss_pred CCccchHHHHHHHHHHHHcCCcEE-E---e------cc--CCCHHHHHHHHHHHHHcCCCC--cEEeeecccCCHH
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLI-I---T------QL--FYDTDMFLKFVNDCRQIGITC--PIVPGIMPINNYK 200 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFi-I---T------Ql--ffD~d~f~~f~~~~R~~Gi~v--PIIpGImPI~s~~ 200 (566)
++.+++|| +||+|.+ + | +. --+.+..++.++.++++|+.+ =+|.|+ ..+.+
T Consensus 136 ------~e~l~~Lk---eAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl--gEt~e 200 (345)
T PRK15108 136 ------ESQAQRLA---NAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL--GETVK 200 (345)
T ss_pred ------HHHHHHHH---HcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC--CCCHH
Confidence 14566665 6898832 1 0 11 125556666677777778632 235553 44554
No 83
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.94 E-value=31 Score=34.57 Aligned_cols=130 Identities=14% Similarity=0.069 Sum_probs=84.8
Q ss_pred ccchhhccCCCcCEEEecCCCC--------CCCc----hhHHHHHHHHHhhcCCceeEEe-cccc--CCHHHHHHHHHHH
Q 008423 7 SSGWTAWWPTTRHSATSRWGAG--------GSTA----DLTLDIANRMQNTICVETMMHL-TCTN--MPVEKIDHALQTI 71 (566)
Q Consensus 7 ~~~~~~~~~~~p~fVsVTwgag--------G~~~----~~Sl~la~~lq~~~Gle~i~HL-TCrd--~n~~~L~~~L~~a 71 (566)
.++..++.+...+.|.|..... +.+. ....+.++.+++ .|+++...+ +... .|.+.+.+.++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE-AGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 5666777777778888777443 1222 345566666665 799999999 5666 8999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 72 KSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 72 ~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
.++|+..|-+- |.. |. ..-....++++.+++..++ ..+|+-+ |- +.. .-+...
T Consensus 156 ~~~g~~~i~l~--Dt~--G~------~~P~~v~~li~~l~~~~~~-~~~~~H~----Hn---~~g---------la~an~ 208 (265)
T cd03174 156 EEAGADEISLK--DTV--GL------ATPEEVAELVKALREALPD-VPLGLHT----HN---TLG---------LAVANS 208 (265)
T ss_pred HHcCCCEEEec--hhc--CC------cCHHHHHHHHHHHHHhCCC-CeEEEEe----CC---CCC---------hHHHHH
Confidence 99998876632 211 10 0111367889999988775 5666544 31 121 235555
Q ss_pred HHHHHcCCcEEEe
Q 008423 152 KKKVDAGADLIIT 164 (566)
Q Consensus 152 k~KvdAGAdFiIT 164 (566)
.+=++|||+.|=+
T Consensus 209 laA~~aG~~~id~ 221 (265)
T cd03174 209 LAALEAGADRVDG 221 (265)
T ss_pred HHHHHcCCCEEEe
Confidence 5667899987643
No 84
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=81.90 E-value=42 Score=36.49 Aligned_cols=147 Identities=15% Similarity=0.297 Sum_probs=77.3
Q ss_pred ccCCHHHHHHHHHH-------HHHcCCCEEEEec---CCC------C---CCCCCcc-ccCCCcccHHHHHHHHHHHcCC
Q 008423 57 TNMPVEKIDHALQT-------IKSNGIQNVLALR---GDP------P---HGQDKFV-QIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 57 rd~n~~~L~~~L~~-------a~~~GIrNILaLr---GDp------p---~~~~~~~-~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
+.|+.++|++.++. |+++|.+-|=+=. |-. | +-.|+|- ..........++|+.||+..|+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~ 217 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGE 217 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 44677777766553 4579999986544 432 1 1112221 0122344578899999999998
Q ss_pred ceeEEEEecCCCC----CCCC--CCCCCCCccchHHHHHHHHHHH-HcCCcEE-Ee-----ccC------C-CHHHHHHH
Q 008423 117 YFGITVAGYPEGH----PDTI--GPDGVASNESYQSDLLYLKKKV-DAGADLI-IT-----QLF------Y-DTDMFLKF 176 (566)
Q Consensus 117 ~F~IGVAgyPEgH----pe~~--~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFi-IT-----Qlf------f-D~d~f~~f 176 (566)
.|.||+=-.|... .... +.+......++ +|...+.+.+ ++|+|++ || |+. | ....+..+
T Consensus 218 ~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~-e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~ 296 (382)
T cd02931 218 DFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDL-EEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPY 296 (382)
T ss_pred CceEEEEEechhhccccccccccccccccCCCCH-HHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHH
Confidence 8999986665310 0000 00000001122 2333444444 4799987 33 222 1 12233567
Q ss_pred HHHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 177 VNDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 177 ~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
.+.+|++ +++||+ +.=-|.+...+.++.
T Consensus 297 ~~~ik~~-~~~pvi-~~G~i~~~~~~~~~l 324 (382)
T cd02931 297 CKALKEV-VDVPVI-MAGRMEDPELASEAI 324 (382)
T ss_pred HHHHHHH-CCCCEE-EeCCCCCHHHHHHHH
Confidence 7777775 568876 344556666555544
No 85
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=81.90 E-value=73 Score=33.56 Aligned_cols=173 Identities=16% Similarity=0.081 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CCCc---cccCCCcccHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG-QDKF---VQIQGGFACALDLVK 108 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~-~~~~---~~~~~~F~~A~dLVk 108 (566)
..-++.+..+.....++++.-.-.. -+...+.+.+..+.++|+.-|.+=-.--|+. +... ...--..+...+.|+
T Consensus 64 ~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 64 TQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred HHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence 3455556666666788888887776 6999999999999999999998722211211 0000 000011223555666
Q ss_pred HHHHH-cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc-CCCHHHHHHHHHHHHHcCCC
Q 008423 109 HIRSA-YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL-FYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 109 ~Ir~~-~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl-ffD~d~f~~f~~~~R~~Gi~ 186 (566)
.+++. .+..|.|-+-.--.... ...++-++|.+.=.+||||-+.-.. ..+.+.+.++.+.++..-..
T Consensus 143 Aa~~a~~~~~~~IiARTDa~~~~-----------~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~ 211 (285)
T TIGR02320 143 AGKDAQTTEDFMIIARVESLILG-----------KGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPR 211 (285)
T ss_pred HHHHhccCCCeEEEEeccccccc-----------CCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCC
Confidence 66554 34456553331111000 1233679999999999999887774 68999999999888642124
Q ss_pred CcEE--eeecccCCHHHHHHHhccCCCCCCHHHH
Q 008423 187 CPIV--PGIMPINNYKGFLRMTGFCKTKIPAEIT 218 (566)
Q Consensus 187 vPII--pGImPI~s~~~~~r~~~l~Gv~VP~~il 218 (566)
+|++ +|-.|..+.+.+..+ -..-+..|..++
T Consensus 212 ~pl~~~~~~~~~~~~~eL~~l-G~~~v~~~~~~~ 244 (285)
T TIGR02320 212 TPLVIVPTSYYTTPTDEFRDA-GISVVIYANHLL 244 (285)
T ss_pred CCEEEecCCCCCCCHHHHHHc-CCCEEEEhHHHH
Confidence 6764 222255566665542 223345565553
No 86
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=81.59 E-value=6.7 Score=41.45 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=40.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc-------ccCCCcccHHHHHHHHHHHcC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFV-------QIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~-------~~~~~F~~A~dLVk~Ir~~~g 115 (566)
.-++.+++.+.+..+.+.|++.|++..|..|...-.+. .-.....+..++++.|+++.+
T Consensus 33 ~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~ 98 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETG 98 (322)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcC
Confidence 35688999999999999999999988898875420000 001123467788888886543
No 87
>PLN02826 dihydroorotate dehydrogenase
Probab=81.34 E-value=27 Score=38.65 Aligned_cols=114 Identities=13% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec------CCC---CCCCCC-ccccCCCcccHHHHHHHHHHHcCC
Q 008423 47 CVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR------GDP---PHGQDK-FVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 47 Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr------GDp---p~~~~~-~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
.++++.-++- +.+.+++.+....|.+.|++-|.+.- +|. +...+. .-.....+..|.++|+.+++..+.
T Consensus 262 ~~Pv~vKlaP-dl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 262 PPPLLVKIAP-DLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred CCceEEecCC-CCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4677777776 77888999999999999999998863 221 110000 000122355689999999887653
Q ss_pred ce-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCC-HHHHHHHHHHHH
Q 008423 117 YF-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYD-TDMFLKFVNDCR 181 (566)
Q Consensus 117 ~F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD-~d~f~~f~~~~R 181 (566)
.+ -||+.|-=. -+-..+|+.|||+. +-|-++|. +..+.+..+.+.
T Consensus 341 ~ipIIgvGGI~s--------------------g~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~ 389 (409)
T PLN02826 341 KIPLVGCGGVSS--------------------GEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELA 389 (409)
T ss_pred CCcEEEECCCCC--------------------HHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHH
Confidence 34 455554221 23357899999996 56888894 777666555544
No 88
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=81.25 E-value=41 Score=35.59 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--CCCccccC--CCcccHHHHH
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG--QDKFVQIQ--GGFACALDLV 107 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~--~~~~~~~~--~~F~~A~dLV 107 (566)
.+.-++.+..+-+...++++.-+-.---+...+...+..+.++|+--|-+= |..-. -.+. +.+ -.++..++=|
T Consensus 63 ~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iE--Dq~~pk~cgh~-~gk~l~~~~e~v~rI 139 (289)
T COG2513 63 LDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIE--DQVGPKRCGHL-PGKELVSIDEMVDRI 139 (289)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeee--ecccchhcCCC-CCCCcCCHHHHHHHH
Confidence 456777888888888999999876643357778888888888998766632 22111 0000 011 2344566777
Q ss_pred HHHHHHcC-CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCC
Q 008423 108 KHIRSAYG-DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 108 k~Ir~~~g-d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~ 186 (566)
+.+++.-. ..|.|-.-.--.++. .++.-|+|.+.=++||||.|.+--.-|.+.|.+|.+.++
T Consensus 140 kAa~~a~~~~~fvi~ARTda~~~~------------~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~----- 202 (289)
T COG2513 140 KAAVEARRDPDFVIIARTDALLVE------------GLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP----- 202 (289)
T ss_pred HHHHHhccCCCeEEEeehHHHHhc------------cHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-----
Confidence 77766543 346665443322221 123679999999999999999999999999999987765
Q ss_pred CcEEeeec
Q 008423 187 CPIVPGIM 194 (566)
Q Consensus 187 vPIIpGIm 194 (566)
+|+..-+|
T Consensus 203 ~pl~~N~t 210 (289)
T COG2513 203 VPLPANIT 210 (289)
T ss_pred CCeeeEee
Confidence 66655554
No 89
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=81.22 E-value=40 Score=35.25 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHc--CCCEEEEe----cC---CCCCCCCCc--cccCCC-
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSN--GIQNVLAL----RG---DPPHGQDKF--VQIQGG- 99 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~--GIrNILaL----rG---Dpp~~~~~~--~~~~~~- 99 (566)
.+...++++.+++...+++..-|+- +.+..++.+....+.+. |++-|.+. .| |..+..... ....++
T Consensus 142 ~~~~~~i~~~v~~~~~iPv~vKl~p-~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~ 220 (294)
T cd04741 142 FDATLEYLTAVKAAYSIPVGVKTPP-YTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGL 220 (294)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC-CCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCc
Confidence 3567788888888788999999987 56777787777777777 88888763 22 110110000 001123
Q ss_pred -----cccHHHHHHHHHHHcCCce-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCC-CH
Q 008423 100 -----FACALDLVKHIRSAYGDYF-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFY-DT 170 (566)
Q Consensus 100 -----F~~A~dLVk~Ir~~~gd~F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlff-D~ 170 (566)
+..|...|+.+++..+..+ -||+.+-- + -+-..+++.||||. +-|=++| ++
T Consensus 221 SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~-------s-------------~~da~e~l~aGA~~Vqv~ta~~~~gp 280 (294)
T cd04741 221 AGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL-------D-------------GRGAFRMRLAGASAVQVGTALGKEGP 280 (294)
T ss_pred CchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC-------C-------------HHHHHHHHHcCCCceeEchhhhhcCc
Confidence 3357888888888775223 34443321 1 22245566699995 5677887 99
Q ss_pred HHHHHHHHHHHH
Q 008423 171 DMFLKFVNDCRQ 182 (566)
Q Consensus 171 d~f~~f~~~~R~ 182 (566)
..|.+..+.+++
T Consensus 281 ~~~~~i~~~L~~ 292 (294)
T cd04741 281 KVFARIEKELED 292 (294)
T ss_pred hHHHHHHHHHHh
Confidence 999888877764
No 90
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=81.21 E-value=12 Score=39.75 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHH-HcCCceeEEE---EecCCCCCCCCC
Q 008423 60 PVEKIDHALQTIK-SNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRS-AYGDYFGITV---AGYPEGHPDTIG 134 (566)
Q Consensus 60 n~~~L~~~L~~a~-~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~-~~gd~F~IGV---AgyPEgHpe~~~ 134 (566)
+.+.+++.+.... ..||++|++-+|||-...+ .. -.+|++.++. .+-....|+. +..|+.-.
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d------~~---L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit---- 192 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSGGDPLMAKD------HR---LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRIT---- 192 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc------hH---HHHHHHHHHhCCCCcEEEEecCcceeeHHHhh----
Confidence 4567777777666 4599999999998864211 11 2234433333 2333355654 55664210
Q ss_pred CCCCCCccchHHHHHHHHHHHHcCCcEE-EeccCCC---HHHHHHHHHHHHHcCCC
Q 008423 135 PDGVASNESYQSDLLYLKKKVDAGADLI-ITQLFYD---TDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlffD---~d~f~~f~~~~R~~Gi~ 186 (566)
+..++.|+ ++|-+.+ +|++=-- .+.+.+=++.++++|+.
T Consensus 193 ----------~el~~~L~---~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~ 235 (321)
T TIGR03821 193 ----------SGLCDLLA---NSRLQTVLVVHINHANEIDAEVADALAKLRNAGIT 235 (321)
T ss_pred ----------HHHHHHHH---hcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCE
Confidence 02233332 2576554 5665211 14466677778888854
No 91
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=80.32 E-value=45 Score=32.08 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=73.2
Q ss_pred HHHHHHHHhh-cCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHc
Q 008423 36 LDIANRMQNT-ICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAY 114 (566)
Q Consensus 36 l~la~~lq~~-~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~ 114 (566)
++..+.+++. .+++...|++..+..+ ..+..+.++|+.-|.+-.-.+ .....++++++++ +
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~----~~~~~~~~aGad~i~~h~~~~-------------~~~~~~~i~~~~~-~ 102 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGA----LEAEMAFKAGADIVTVLGAAP-------------LSTIKKAVKAAKK-Y 102 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccH----HHHHHHHhcCCCEEEEEeeCC-------------HHHHHHHHHHHHH-c
Confidence 5667777764 4889999999876654 235777899999888652111 1235678888875 5
Q ss_pred CCceeEEEE-ecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHH-----HHHHHHHHHcCCCCc
Q 008423 115 GDYFGITVA-GYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMF-----LKFVNDCRQIGITCP 188 (566)
Q Consensus 115 gd~F~IGVA-gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f-----~~f~~~~R~~Gi~vP 188 (566)
| ..++++ ..|.- + .+. ++ -...|+|++...+.|+...+ .+.++++++. .++|
T Consensus 103 g--~~~~v~~~~~~t------~----------~e~--~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 160 (202)
T cd04726 103 G--KEVQVDLIGVED------P----------EKR--AK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVK 160 (202)
T ss_pred C--CeEEEEEeCCCC------H----------HHH--HH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCC
Confidence 5 456664 44431 1 222 22 55579999988777766554 3455555543 3566
Q ss_pred EE--eeec
Q 008423 189 IV--PGIM 194 (566)
Q Consensus 189 II--pGIm 194 (566)
|. .||-
T Consensus 161 i~~~GGI~ 168 (202)
T cd04726 161 VAVAGGIT 168 (202)
T ss_pred EEEECCcC
Confidence 63 4553
No 92
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=80.32 E-value=2.5 Score=45.22 Aligned_cols=169 Identities=14% Similarity=0.195 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccch
Q 008423 65 DHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144 (566)
Q Consensus 65 ~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~ 144 (566)
++.+..|+-.+-..+=+..|||-. .....++.++.+++.+|..|+|---..+..
T Consensus 68 eDii~ea~~~~a~GasiTGGdPl~----------~ieR~~~~ir~LK~efG~~fHiHLYT~g~~---------------- 121 (353)
T COG2108 68 EDIIEEAKLMDALGASITGGDPLL----------EIERTVEYIRLLKDEFGEDFHIHLYTTGIL---------------- 121 (353)
T ss_pred HHHHHHHHHhccccccccCCChHH----------HHHHHHHHHHHHHHhhccceeEEEeecccc----------------
Confidence 444444444443334455666642 233578889999999999999876543332
Q ss_pred HHHHHHHHHHHHcCCcEEEecc-CCCH---HHHHHHHHHHHHc----CCCCcEEeeec-ccCCHHHH-H----HHhccCC
Q 008423 145 QSDLLYLKKKVDAGADLIITQL-FYDT---DMFLKFVNDCRQI----GITCPIVPGIM-PINNYKGF-L----RMTGFCK 210 (566)
Q Consensus 145 ~~dl~~Lk~KvdAGAdFiITQl-ffD~---d~f~~f~~~~R~~----Gi~vPIIpGIm-PI~s~~~~-~----r~~~l~G 210 (566)
.+-+.|++=.+||-|-|==-+ ..+. +.+++.++..++. |+.+|.+||.- -|.-..++ . .|.++.-
T Consensus 122 -~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~e~~i~e~~~~~~~~~~~FlNiNE 200 (353)
T COG2108 122 -ATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIPAIPGEEEAILEFAKALDENGLDFLNINE 200 (353)
T ss_pred -CCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecCCCcchHHHHHHHHHHHHhcccceeeeee
Confidence 123556666789999765444 2332 3344444444454 46788888864 00001111 0 1223333
Q ss_pred CCCCHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHHcCCCe-----EEEEcCCchHHH
Q 008423 211 TKIPAEITAALEPI----KDNEEAVKAYGIHLGAEMCKKILAHGIKT-----LHLYTLNMEKSA 265 (566)
Q Consensus 211 v~VP~~il~~Le~~----kddde~vk~~Gv~la~e~i~~L~~~Gv~G-----iHfyTlN~e~~v 265 (566)
..+.+.=+++|... +++. -.+++-..|++.++++- +.. +|++|--.-+++
T Consensus 201 LE~sE~N~~~l~~~gy~~~~~~----~~av~GS~E~~Lk~l~~-~~~~~~l~vH~Css~~KDav 259 (353)
T COG2108 201 LEFSENNYENLLERGYKISDDG----SSAVAGSLEAALKVLKW-AEENWDLTVHYCSSKFKDAV 259 (353)
T ss_pred eeeccchHHHHHhcCceeccCC----cccccchHHHHHHHHHH-HhcccCceEEECchhhhHHH
Confidence 55666555555432 1111 12345566777777765 333 888875544443
No 93
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=79.57 E-value=11 Score=40.80 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=53.3
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccC-CCHHHHHHHHHHHHHcCCCCcEEeeecc
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLF-YDTDMFLKFVNDCRQIGITCPIVPGIMP 195 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf-fD~d~f~~f~~~~R~~Gi~vPIIpGImP 195 (566)
...+|+|.-|.. +++++.++-++||+|+|+-+.- -..+.+.+.++.+|+...++|||.|=
T Consensus 96 ~l~V~aavg~~~-----------------~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN-- 156 (352)
T PF00478_consen 96 RLLVAAAVGTRD-----------------DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN-- 156 (352)
T ss_dssp CBCEEEEEESST-----------------CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE--
T ss_pred cceEEEEecCCH-----------------HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc--
Confidence 467888876632 3588889999999999877633 35666778899999887789999995
Q ss_pred cCCHHHHHHHhc
Q 008423 196 INNYKGFLRMTG 207 (566)
Q Consensus 196 I~s~~~~~r~~~ 207 (566)
+.|+..+..+.+
T Consensus 157 V~T~e~a~~L~~ 168 (352)
T PF00478_consen 157 VVTYEGAKDLID 168 (352)
T ss_dssp E-SHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 888888877654
No 94
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=79.16 E-value=85 Score=32.63 Aligned_cols=129 Identities=9% Similarity=0.076 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKS-NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 60 n~~~L~~~L~~a~~-~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
+.+.+++.++.+.+ .||+.|+++. ..|+. ..-..+.=.++++...+..+..+.|=+.. ++ .+
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~G----stGE~---~~Ls~eEr~~~~~~~~~~~~~~~~viagv---g~---~~---- 84 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGG----STGEA---FLLSTEEKKQVLEIVAEEAKGKVKLIAQV---GS---VN---- 84 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECC----Ccccc---ccCCHHHHHHHHHHHHHHhCCCCCEEecC---CC---CC----
Confidence 78999999999999 9999999764 11221 11222345667777666544333221111 11 11
Q ss_pred CCccchHHHHHHHHHHHHcCCcE-EEeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCC
Q 008423 139 ASNESYQSDLLYLKKKVDAGADL-IITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIP 214 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP 214 (566)
.++-++..+.=.++|||. .++.++| +.+.+.+|.+.+-++ .++||+.==.|- ..|+.++
T Consensus 85 -----t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a-~~lPv~iYn~P~-----------~tg~~l~ 147 (293)
T PRK04147 85 -----TAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDS-ADNPMIVYNIPA-----------LTGVNLS 147 (293)
T ss_pred -----HHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCch-----------hhccCCC
Confidence 113344444446789995 5566666 457777777776553 357876443332 2455566
Q ss_pred HHHHHHhC
Q 008423 215 AEITAALE 222 (566)
Q Consensus 215 ~~il~~Le 222 (566)
.+++.+|.
T Consensus 148 ~~~l~~L~ 155 (293)
T PRK04147 148 LDQFNELF 155 (293)
T ss_pred HHHHHHHh
Confidence 66666664
No 95
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.98 E-value=49 Score=35.50 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=73.1
Q ss_pred cccCCHHHHHHHHH-------HHHHcCCCEEEEecC---------CCCCC--CCCcc-ccCCCcccHHHHHHHHHHHcC-
Q 008423 56 CTNMPVEKIDHALQ-------TIKSNGIQNVLALRG---------DPPHG--QDKFV-QIQGGFACALDLVKHIRSAYG- 115 (566)
Q Consensus 56 Crd~n~~~L~~~L~-------~a~~~GIrNILaLrG---------Dpp~~--~~~~~-~~~~~F~~A~dLVk~Ir~~~g- 115 (566)
++.|+.++|++.++ .|+++|.+-|=+=.| .|-.. .|.|- ...+......++|+.||+..|
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~ 210 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDK 210 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777766554 446789998865333 22111 11111 112334557889999999887
Q ss_pred ---CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCcEE-EeccCCCH------HHHHHHHHHHHHc-
Q 008423 116 ---DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGADLI-ITQLFYDT------DMFLKFVNDCRQI- 183 (566)
Q Consensus 116 ---d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFi-ITQlffD~------d~f~~f~~~~R~~- 183 (566)
..|.||+--.|+...+. .. ++ +|...+.+.+ ++|+|+| ||...|.. .....+.+.+++.
T Consensus 211 ~~~~~~~v~~R~s~~~~~~~-g~-------~~-ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~ 281 (353)
T cd04735 211 HADKDFILGYRFSPEEPEEP-GI-------RM-EDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERI 281 (353)
T ss_pred ccCCCceEEEEECcccccCC-CC-------CH-HHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHh
Confidence 67999998777543111 11 11 3344444444 5799997 44332311 1123334444432
Q ss_pred CCCCcEEeeecccCCHHHHHH
Q 008423 184 GITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 184 Gi~vPIIpGImPI~s~~~~~r 204 (566)
+..+||+. .=-|.+...+.+
T Consensus 282 ~~~iPVi~-~Ggi~t~e~ae~ 301 (353)
T cd04735 282 AGRLPLIA-VGSINTPDDALE 301 (353)
T ss_pred CCCCCEEE-ECCCCCHHHHHH
Confidence 23577653 223445554443
No 96
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=78.96 E-value=55 Score=34.36 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=39.8
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEe
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAg 124 (566)
-+.++.+++.+.+..+.+.|+++|....|+|.-. ....++|+.+++..+. ..|.+..
T Consensus 46 ~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----------~~l~~li~~i~~~~~~-~~i~itT 102 (331)
T PRK00164 46 EELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----------KDLEDIIAALAALPGI-RDLALTT 102 (331)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----------cCHHHHHHHHHhcCCC-ceEEEEc
Confidence 3457889999999999999999999887776431 1256788888764332 3455443
No 97
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=78.88 E-value=57 Score=34.33 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=39.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce-eEEEEec
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF-GITVAGY 125 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F-~IGVAgy 125 (566)
..++.+++.+.+..+.+.|++.|..-.|+|--. ..-.++|+.+++..+ + .+.+..+
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----------~~l~~li~~i~~~~g--i~~v~itTN 97 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----------KDLVELVARLAALPG--IEDIALTTN 97 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----------CCHHHHHHHHHhcCC--CCeEEEEeC
Confidence 457889999999999999999998777776531 125678888775433 3 4555543
No 98
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=78.12 E-value=63 Score=32.78 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC--CCcEEee
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGI--TCPIVPG 192 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi--~vPIIpG 192 (566)
..+.+++ ++++|.|+- +.+......|++.+++.|+ ++|++.+
T Consensus 177 ~~i~~l~---~~~~d~i~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 220 (333)
T cd06332 177 AELAQIR---AAKPDAVFV--FLPGGMAVNFVKQYDQAGLKKKIPLYGP 220 (333)
T ss_pred HHHHHHH---hcCCCEEEE--ecccchHHHHHHHHHHcCcccCCceecc
Confidence 4455553 578998886 3444556789999999999 8888743
No 99
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=78.09 E-value=39 Score=36.17 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHH
Q 008423 75 GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKK 154 (566)
Q Consensus 75 GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~K 154 (566)
+++.|..-.|.|.-- .-++..+|++.|++.......|.+-++|+.-. . +.++.|+
T Consensus 51 ~v~~iyfGGGTPs~l---------~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~----~----------e~l~~l~-- 105 (350)
T PRK08446 51 KIESVFIGGGTPSTV---------SAKFYEPIFEIISPYLSKDCEITTEANPNSAT----K----------AWLKGMK-- 105 (350)
T ss_pred ceeEEEECCCccccC---------CHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC----H----------HHHHHHH--
Confidence 677776555566432 11246677777776544445677777875421 1 2233333
Q ss_pred HHcCCcEE-E-e-----------ccCCCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHHH
Q 008423 155 VDAGADLI-I-T-----------QLFYDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 155 vdAGAdFi-I-T-----------QlffD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~r 204 (566)
++|.+.| | - .=.++.+.+.+-++.+|++|++ +-+|.|+ |-+|.+.+.+
T Consensus 106 -~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~Gl-Pgqt~~~~~~ 169 (350)
T PRK08446 106 -NLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDT-PLDNKKLLKE 169 (350)
T ss_pred -HcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC-CCCCHHHHHH
Confidence 4687654 1 0 1235677888889999999964 4567777 5677776654
No 100
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=77.90 E-value=31 Score=36.93 Aligned_cols=129 Identities=17% Similarity=0.244 Sum_probs=73.2
Q ss_pred ccccCCHHHHHHHHH-------HHHHcCCCEEEEecCC---------CC--CCCCCcc-ccCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGD---------PP--HGQDKFV-QIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGD---------pp--~~~~~~~-~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+++.|++++|++.++ .|+++|.+-|-+=.|- |. +-.|+|- ...+......++|+.||+..|
T Consensus 138 ~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg 217 (338)
T cd02933 138 TPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG 217 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhC
Confidence 467788888876654 4567899999765554 21 1122221 112345668899999999888
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHH-HHcCCcEE-EeccCCCH---HHHHHHHHHHHHcCCCCcEE
Q 008423 116 DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKK-VDAGADLI-ITQLFYDT---DMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 116 d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~K-vdAGAdFi-ITQlffD~---d~f~~f~~~~R~~Gi~vPII 190 (566)
.++ ||+--.++..-..... ..++ +|...+.+. .++|+|++ ||.-.+.. ..+..+.+.+|++ +++||+
T Consensus 218 ~d~-v~vRis~~~~~~~~~~-----~~~~-ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~-~~ipvi 289 (338)
T cd02933 218 ADR-VGIRLSPFGTFNDMGD-----SDPE-ATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKA-FKGPLI 289 (338)
T ss_pred CCc-eEEEECccccCCCCCC-----CCCH-HHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHH-cCCCEE
Confidence 664 8887766422110000 0011 333344333 35799988 55554422 2355667777765 467765
Q ss_pred e
Q 008423 191 P 191 (566)
Q Consensus 191 p 191 (566)
.
T Consensus 290 ~ 290 (338)
T cd02933 290 A 290 (338)
T ss_pred E
Confidence 3
No 101
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=77.67 E-value=20 Score=38.03 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEE---EecCCCCCCCC
Q 008423 60 PVEKIDHALQTIKS-NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITV---AGYPEGHPDTI 133 (566)
Q Consensus 60 n~~~L~~~L~~a~~-~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGV---AgyPEgHpe~~ 133 (566)
+.+++++.+..+.+ .||+.|+.-+|||-...+ ..-.+|++.+++ .+. ...|+. +.+|..-
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---------~~L~~ll~~l~~-i~~v~~iri~Tr~~v~~p~ri---- 185 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---------RRLGDIMARLAA-IDHVKIVRFHTRVPVADPARV---- 185 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---------HHHHHHHHHHHh-CCCccEEEEeCCCcccChhhc----
Confidence 55778888887764 499999977788753210 125567777765 332 124442 1234321
Q ss_pred CCCCCCCccchHHHHHHHHHHHHcCC-cEEEeccCCCH---HHHHHHHHHHHHcCCC
Q 008423 134 GPDGVASNESYQSDLLYLKKKVDAGA-DLIITQLFYDT---DMFLKFVNDCRQIGIT 186 (566)
Q Consensus 134 ~~~~~~~~~~~~~dl~~Lk~KvdAGA-dFiITQlffD~---d~f~~f~~~~R~~Gi~ 186 (566)
+ ++.++.|++ +|. .+|.++..... +...+-++.++++|+.
T Consensus 186 t----------~ell~~L~~---~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 186 T----------PALIAALKT---SGKTVYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred C----------HHHHHHHHH---cCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 1 123333432 563 36777775432 4455667778888864
No 102
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.64 E-value=55 Score=32.37 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHH
Q 008423 67 ALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQS 146 (566)
Q Consensus 67 ~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~ 146 (566)
.++.+.++|+.-|+....+.... .+ ....++++.+++.. .+.+.+.. | +
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p-------~~--~~~~~~i~~~~~~g--~~~iiv~v----~----t------------ 132 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRP-------DG--ETLAELIKRIHEEY--NCLLMADI----S----T------------ 132 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCC-------CC--cCHHHHHHHHHHHh--CCeEEEEC----C----C------------
Confidence 66888899999555432221100 00 13567888888654 23443321 1 1
Q ss_pred HHHHHHHHHHcCCcEEEeccC-C------CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 147 DLLYLKKKVDAGADLIITQLF-Y------DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQlf-f------D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
.+..++-.++|+|++.+... + ......++++.+++. +++||+++= .|.+...+.++.+
T Consensus 133 -~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvia~G-GI~~~~~~~~~l~ 197 (219)
T cd04729 133 -LEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-LGIPVIAEG-RINSPEQAAKALE 197 (219)
T ss_pred -HHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh-cCCCEEEeC-CCCCHHHHHHHHH
Confidence 12236667799999976432 1 111223566777653 368987643 6777766666443
No 103
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=77.63 E-value=62 Score=34.71 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=78.6
Q ss_pred HHHHHHHhhcCCceeEEecc--------------------------ccCCHHHHHHHHH-------HHHHcCCCEEEEec
Q 008423 37 DIANRMQNTICVETMMHLTC--------------------------TNMPVEKIDHALQ-------TIKSNGIQNVLALR 83 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTC--------------------------rd~n~~~L~~~L~-------~a~~~GIrNILaLr 83 (566)
.++..+++ .|-..+++|+. +.|++++|++.++ .|+++|++-|=+=.
T Consensus 85 ~l~d~vh~-~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ 163 (337)
T PRK13523 85 KLVTFIHD-HGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHG 163 (337)
T ss_pred HHHHHHHh-cCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 55666664 57777777633 4577777776554 34678999998766
Q ss_pred C---------CCCC--CCCCcc-ccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 84 G---------DPPH--GQDKFV-QIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 84 G---------Dpp~--~~~~~~-~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
| .|-. -.|+|- ...+......++|+.||+.. .|.|++=-.++...+. .. ++ +|...+
T Consensus 164 ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~~v~vRis~~d~~~~-G~-------~~-~e~~~i 232 (337)
T PRK13523 164 AHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DGPLFVRISASDYHPG-GL-------TV-QDYVQY 232 (337)
T ss_pred ccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CCCeEEEecccccCCC-CC-------CH-HHHHHH
Confidence 6 3421 122221 01223456788999999876 3678877666433211 11 11 334334
Q ss_pred HHHH-HcCCcEE-EeccCC-------CHHHHHHHHHHHHHcCCCCcEE
Q 008423 152 KKKV-DAGADLI-ITQLFY-------DTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 152 k~Kv-dAGAdFi-ITQlff-------D~d~f~~f~~~~R~~Gi~vPII 190 (566)
.+.+ ++|+|+| ||.-.| -...+..+.+.+|++ .++||+
T Consensus 233 ~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi 279 (337)
T PRK13523 233 AKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH-ANIATG 279 (337)
T ss_pred HHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh-cCCcEE
Confidence 3333 4799987 333211 112234566677765 467764
No 104
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=77.42 E-value=14 Score=39.16 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHc
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAY 114 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~ 114 (566)
++.+++.+.+..+++.|++.|.+..|+.|. ..+++..++++.|++..
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~---------~~~~~~~~li~~Ik~~~ 118 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPD---------LGLDYYEDLFRAIKARF 118 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCC---------CCHHHHHHHHHHHHHHC
Confidence 578899999999999999999988776553 23556778999998754
No 105
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=77.16 E-value=31 Score=37.27 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=71.4
Q ss_pred EeccccCCHHHHHHHHH-------HHHHcCCCEEEEecCCC--------CC---CCCCcc-ccCCCcccHHHHHHHHHHH
Q 008423 53 HLTCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGDP--------PH---GQDKFV-QIQGGFACALDLVKHIRSA 113 (566)
Q Consensus 53 HLTCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGDp--------p~---~~~~~~-~~~~~F~~A~dLVk~Ir~~ 113 (566)
+-+++.|+.++|++.++ .|+++|++-|-+=.|-- |. -.|+|- ..++......++|+.||+.
T Consensus 143 ~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~ 222 (362)
T PRK10605 143 TSTPRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAE 222 (362)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34578899888887665 45679999988643331 10 011110 0123345578999999999
Q ss_pred cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCcEE-EeccCCC--HHHHHHHHHHHHHcCCCCcE
Q 008423 114 YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGADLI-ITQLFYD--TDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 114 ~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFi-ITQlffD--~d~f~~f~~~~R~~Gi~vPI 189 (566)
.|+.+ ||+-..|+.+.+... . ..+++++..++.+.+ ++|.||| ||-.-+. ...+..|.+++|++ .++||
T Consensus 223 vg~~~-igvRis~~~~~~~~~-~----G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~-~~~pv 295 (362)
T PRK10605 223 WGADR-IGIRISPLGTFNNVD-N----GPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRAR-FHGVI 295 (362)
T ss_pred cCCCe-EEEEECCccccccCC-C----CCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHH-CCCCE
Confidence 98776 999988875321100 0 012222223333333 3689988 5542111 11123455556653 34555
Q ss_pred Ee
Q 008423 190 VP 191 (566)
Q Consensus 190 Ip 191 (566)
+.
T Consensus 296 ~~ 297 (362)
T PRK10605 296 IG 297 (362)
T ss_pred EE
Confidence 43
No 106
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=77.15 E-value=46 Score=39.48 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=77.6
Q ss_pred ccccCCHHHHHHHHH-------HHHHcCCCEEEEecC---------CCCCC--CCCccc-cCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRG---------DPPHG--QDKFVQ-IQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrG---------Dpp~~--~~~~~~-~~~~F~~A~dLVk~Ir~~~g 115 (566)
+.+.|++++|++.++ .|+++|++-|=+=.| .|-.. .+.|-. .++......++|+.||+..|
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~ 616 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWP 616 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcC
Confidence 456788888776554 456799999987666 44321 121110 11224457889999999998
Q ss_pred CceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHH-HcCCcEE-EeccCCCH--------HHHHHHHHHHHHcC
Q 008423 116 DYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKV-DAGADLI-ITQLFYDT--------DMFLKFVNDCRQIG 184 (566)
Q Consensus 116 d~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFi-ITQlffD~--------d~f~~f~~~~R~~G 184 (566)
++|.||+=..+....+. .+. +|..++.+.+ ++|+||| |+.-.+.. .....|.+.+|++
T Consensus 617 ~~~~v~~ri~~~~~~~~g~~~----------~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~- 685 (765)
T PRK08255 617 AEKPMSVRISAHDWVEGGNTP----------DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNE- 685 (765)
T ss_pred CCCeeEEEEccccccCCCCCH----------HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHH-
Confidence 88999998887554321 111 2333444433 5799987 44221111 1224455666664
Q ss_pred CCCcEEeeecccCCHHHHHH
Q 008423 185 ITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 185 i~vPIIpGImPI~s~~~~~r 204 (566)
+++||+. .=-|.+...+.+
T Consensus 686 ~~~pv~~-~G~i~~~~~a~~ 704 (765)
T PRK08255 686 AGIATIA-VGAISEADHVNS 704 (765)
T ss_pred cCCEEEE-eCCCCCHHHHHH
Confidence 4567543 223444444433
No 107
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=77.05 E-value=60 Score=35.15 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=77.2
Q ss_pred ccccCCHHHHHHHHH-------HHHHcCCCEEEEecCC---------CC--CCCCCcc-ccCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGD---------PP--HGQDKFV-QIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGD---------pp--~~~~~~~-~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+++.|+.++|++.++ .|+++|++-|=+=.|- |. +-.|.|- ..++......++|+.||+..|
T Consensus 136 ~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 136 QAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVG 215 (370)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcC
Confidence 356788877766554 3467999998765554 22 1112221 123345568899999999999
Q ss_pred CceeEEEEecCCCCC-CCCCCCCCCCccchHHHHHHHHHHHHcCCcEE-Eecc----------CCCHHHHHHHHHHHHHc
Q 008423 116 DYFGITVAGYPEGHP-DTIGPDGVASNESYQSDLLYLKKKVDAGADLI-ITQL----------FYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 116 d~F~IGVAgyPEgHp-e~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQl----------ffD~d~f~~f~~~~R~~ 183 (566)
..|.||+=-.|+..- ..... . .+|...+.+.++.+.|++ +|.- ++....+..+.+.+|++
T Consensus 216 ~~~~v~vRls~~~~~~~~g~~-------~-~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~ 287 (370)
T cd02929 216 DDCAVATRFSVDELIGPGGIE-------S-EGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQV 287 (370)
T ss_pred CCceEEEEecHHHhcCCCCCC-------C-HHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHH
Confidence 889999977775431 11000 1 134445555555546664 2221 11112234556666664
Q ss_pred CCCCcEEeeecccCCHHHHHHH
Q 008423 184 GITCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 184 Gi~vPIIpGImPI~s~~~~~r~ 205 (566)
.++||+.. =-+.+...+.++
T Consensus 288 -~~~pvi~~-G~i~~~~~~~~~ 307 (370)
T cd02929 288 -TSKPVVGV-GRFTSPDKMVEV 307 (370)
T ss_pred -CCCCEEEe-CCCCCHHHHHHH
Confidence 46787642 234455544443
No 108
>PLN02428 lipoic acid synthase
Probab=76.32 E-value=36 Score=36.92 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
..+++.+.+..+.+.|++.|++..||-... .++++.+-.++|+.|++..+. ..|.+ .+|..
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl------~D~ga~~~~elir~Ir~~~P~-i~Ie~-L~pdf 191 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDL------PDGGSGHFAETVRRLKQLKPE-ILVEA-LVPDF 191 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCC------CcccHHHHHHHHHHHHHhCCC-cEEEE-eCccc
Confidence 345677778888999999999999975322 135677889999999987653 45544 56643
No 109
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=76.08 E-value=94 Score=34.38 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-CCCCccccCCCcccHHHHHHHHHHHcCC-ceeEEEEecCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPH-GQDKFVQIQGGFACALDLVKHIRSAYGD-YFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~-~~~~~~~~~~~F~~A~dLVk~Ir~~~gd-~F~IGVAgyPEgHpe~~~~ 135 (566)
.++.+.+.+.++.+.+.|++.|..+ |+... -+. ....+....+|++.+.+. +. .+.++. .+|.. -+.
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~-g~~~~~yG~----d~~~~~~~~~Ll~~l~~~-~i~~ir~~~-~~p~~----i~~ 234 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLL-GQNVNSYGV----DQPGFPSFAELLRLVGAS-GIPRVKFTT-SHPMN----FTD 234 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEE-ecccccccc----CCCCcCCHHHHHHHHHhc-CCcEEEEcc-CCccc----CCH
Confidence 3466888888888888999998755 43321 110 011233466888888653 42 244432 23422 111
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEE--e-----------ccCCCHHHHHHHHHHHHHcCCCC----cEEeeecccCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLII--T-----------QLFYDTDMFLKFVNDCRQIGITC----PIVPGIMPINN 198 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiI--T-----------QlffD~d~f~~f~~~~R~~Gi~v----PIIpGImPI~s 198 (566)
+.++.|+ +..+|..++- - .=-|+.+.+.+.++.+|++|.++ -+|.|+ |=.|
T Consensus 235 ----------ell~~l~-~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~-PgEt 302 (440)
T PRK14334 235 ----------DVIAAMA-ETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGF-PGET 302 (440)
T ss_pred ----------HHHHHHH-hcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEEC-CCCC
Confidence 3344443 3334555431 1 12478888999999999987542 456665 3344
Q ss_pred HHHH
Q 008423 199 YKGF 202 (566)
Q Consensus 199 ~~~~ 202 (566)
.+.+
T Consensus 303 ~ed~ 306 (440)
T PRK14334 303 EEDF 306 (440)
T ss_pred HHHH
Confidence 4433
No 110
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=76.04 E-value=1e+02 Score=32.06 Aligned_cols=129 Identities=8% Similarity=0.043 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNG-IQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGP 135 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~G-IrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~ 135 (566)
.+.+.+.+.++.+.+.| ++.|++.. -- |+. ..-..+.-.++++...+..+..+ -+||.+..
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~G-st---GE~---~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~--------- 81 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGG-ST---GEN---FMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN--------- 81 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECC-cc---ccc---ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC---------
Confidence 48899999999999999 99988663 21 221 11223346677777666554333 34444221
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEE-EeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLI-ITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT 211 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv 211 (566)
.++-++..+.=.++|||.+ +..++| +.+.+.+|.+.+-++--++||+.==.|- ..|+
T Consensus 82 --------t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~-----------~tg~ 142 (290)
T TIGR00683 82 --------LKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPF-----------LTGV 142 (290)
T ss_pred --------HHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCcc-----------cccc
Confidence 1134555555567899964 556766 4577777777764432257876433331 2455
Q ss_pred CCCHHHHHHhC
Q 008423 212 KIPAEITAALE 222 (566)
Q Consensus 212 ~VP~~il~~Le 222 (566)
.+|.+++.+|.
T Consensus 143 ~l~~~~i~~L~ 153 (290)
T TIGR00683 143 NMGIEQFGELY 153 (290)
T ss_pred CcCHHHHHHHh
Confidence 66666666664
No 111
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=75.99 E-value=64 Score=34.51 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec----CCCCCCCC---Cccc------cCCCc
Q 008423 34 LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR----GDPPHGQD---KFVQ------IQGGF 100 (566)
Q Consensus 34 ~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr----GDpp~~~~---~~~~------~~~~F 100 (566)
..-++.+.+++...+++..-|+- +.+.+.+....+.+.|.+-|.+.- |+...... .... .+..+
T Consensus 148 ~l~~l~~~vk~~~~~Pv~vKl~P---~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ik 224 (310)
T COG0167 148 LLEKLLEAVKAATKVPVFVKLAP---NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLK 224 (310)
T ss_pred HHHHHHHHHHhcccCceEEEeCC---CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccch
Confidence 45567778888888999999998 889999999999999988887753 44111110 0000 12235
Q ss_pred ccHHHHHHHHHHHcCCce-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCC-HHHHHHH
Q 008423 101 ACALDLVKHIRSAYGDYF-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYD-TDMFLKF 176 (566)
Q Consensus 101 ~~A~dLVk~Ir~~~gd~F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD-~d~f~~f 176 (566)
..|..+|+.+++..+..+ -||+.|-=. -+-..+|+.|||+. +-|=++|+ +..+.+.
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s--------------------~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIET--------------------GEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCc--------------------HHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 569999999988876444 566665322 33357899999985 66888898 6666554
Q ss_pred HH----HHHHcCC
Q 008423 177 VN----DCRQIGI 185 (566)
Q Consensus 177 ~~----~~R~~Gi 185 (566)
.+ .+++.|.
T Consensus 285 ~~~l~~~l~~~g~ 297 (310)
T COG0167 285 IKGLARWLEEKGF 297 (310)
T ss_pred HHHHHHHHHHcCC
Confidence 44 3445553
No 112
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.63 E-value=96 Score=31.44 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=91.6
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
+++..+++...++.+++.=... .....++.+..++++|++.|++- |-|- ..+++..++++.+++ +|
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~-~~~~~~~~i~~~~~~Gadgvii~--dlp~---------e~~~~~~~~~~~~~~-~G- 129 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLED-YVDSLDNFLNMARDVGADGVLFP--DLLI---------DYPDDLEKYVEIIKN-KG- 129 (244)
T ss_pred HHHHHHhccCCCCEEEEEecch-hhhCHHHHHHHHHHcCCCEEEEC--CCCC---------CcHHHHHHHHHHHHH-cC-
Confidence 5777777656666532222222 35677888999999999999962 1111 012356778888875 55
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-e-ccC----CCHHHHHHHHHHHHHcCCCCcEE
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-T-QLF----YDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-T-Qlf----fD~d~f~~f~~~~R~~Gi~vPII 190 (566)
+..|++.+|.-. .++++.=++....|++ | ... |. ....+.++++|+.-.+.||+
T Consensus 130 -l~~~~~v~p~T~------------------~e~l~~~~~~~~~~l~msv~~~~g~~~~-~~~~~~i~~lr~~~~~~~i~ 189 (244)
T PRK13125 130 -LKPVFFTSPKFP------------------DLLIHRLSKLSPLFIYYGLRPATGVPLP-VSVERNIKRVRNLVGNKYLV 189 (244)
T ss_pred -CCEEEEECCCCC------------------HHHHHHHHHhCCCEEEEEeCCCCCCCch-HHHHHHHHHHHHhcCCCCEE
Confidence 688999988642 2333333334444541 2 111 32 33455677777754357887
Q ss_pred eeecccCCHHHHHHHhc--cCCCCCCHHHHHHhC
Q 008423 191 PGIMPINNYKGFLRMTG--FCKTKIPAEITAALE 222 (566)
Q Consensus 191 pGImPI~s~~~~~r~~~--l~Gv~VP~~il~~Le 222 (566)
.|- .|.|...+..+.+ .-|+-+-..+.+.++
T Consensus 190 v~g-GI~~~e~i~~~~~~gaD~vvvGSai~~~~~ 222 (244)
T PRK13125 190 VGF-GLDSPEDARDALSAGADGVVVGTAFIEELE 222 (244)
T ss_pred EeC-CcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 764 5777777776433 346777788888775
No 113
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=75.62 E-value=1e+02 Score=31.70 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
..+.+|++ +++|.|+. ....+....|++.+++.|++.|++.+-...
T Consensus 187 ~~v~~l~~---~~~d~i~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 232 (345)
T cd06338 187 PLISKAKA---AGPDAVVV--AGHFPDAVLLVRQMKELGYNPKALYMTVGP 232 (345)
T ss_pred HHHHHHHh---cCCCEEEE--CCcchhHHHHHHHHHHcCCCCCEEEEecCC
Confidence 45665543 68998885 333346778999999999998887654443
No 114
>PRK09234 fbiC FO synthase; Reviewed
Probab=75.21 E-value=11 Score=45.38 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC----Ccccc---CCCcccHHHHHHHHHHHcC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD----KFVQI---QGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~----~~~~~---~~~F~~A~dLVk~Ir~~~g 115 (566)
++.+++.+.+..+.+.|++.+|+..|+.|.... .|-.. ...++|-.++++.|+++.|
T Consensus 102 ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g 165 (843)
T PRK09234 102 LSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG 165 (843)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC
Confidence 588899999999999999999999999886310 11111 1235778888999987655
No 115
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.12 E-value=1e+02 Score=31.78 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=80.3
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEecccc-CCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTN-MPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd-~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
........+.|.|.... +.-+...++++.+++ .|+++...+.+.- .+.+.+.+.++.+.++|+..|-+- |....
T Consensus 89 ~~a~~~gv~~iri~~~~--~~~~~~~~~i~~ak~-~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~--DT~G~ 163 (266)
T cd07944 89 EPASGSVVDMIRVAFHK--HEFDEALPLIKAIKE-KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV--DSFGS 163 (266)
T ss_pred HHHhcCCcCEEEEeccc--ccHHHHHHHHHHHHH-CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe--cCCCC
Confidence 33444556777676522 234567778888876 6999998887654 478999999999999999987532 32211
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
. .-....+||+.+++..++...||+-++= +.. .-+..-..=++|||+.|=|
T Consensus 164 ~--------~P~~v~~lv~~l~~~~~~~~~i~~H~Hn-------~~G---------la~AN~laA~~aGa~~vd~ 214 (266)
T cd07944 164 M--------YPEDIKRIISLLRSNLDKDIKLGFHAHN-------NLQ---------LALANTLEAIELGVEIIDA 214 (266)
T ss_pred C--------CHHHHHHHHHHHHHhcCCCceEEEEeCC-------Ccc---------HHHHHHHHHHHcCCCEEEE
Confidence 1 1113788999999877644566664422 221 3344455557899987644
No 116
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=75.00 E-value=41 Score=36.64 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCceeEEec--cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC-ceeEEEE
Q 008423 47 CVETMMHLT--CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD-YFGITVA 123 (566)
Q Consensus 47 Gle~i~HLT--Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd-~F~IGVA 123 (566)
....++.+. -|.++.+.+.+.+..+.+.|++.|..+..|....++.+ . .-....+|++.|++..+. .++++.
T Consensus 153 sfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~---~-~~~~l~~Ll~~l~~~~~~~~ir~~~- 227 (414)
T TIGR01579 153 SYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDL---K-NGTSLAKLLEQILQIPGIKRIRLSS- 227 (414)
T ss_pred CCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCC---C-CCCcHHHHHHHHhcCCCCcEEEEeC-
Confidence 344444433 34557899999999999999999996654443222111 0 113477888888754332 134431
Q ss_pred ecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcC--CcEE-----------Eecc--CCCHHHHHHHHHHHHH--cCCC
Q 008423 124 GYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAG--ADLI-----------ITQL--FYDTDMFLKFVNDCRQ--IGIT 186 (566)
Q Consensus 124 gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAG--AdFi-----------ITQl--ffD~d~f~~f~~~~R~--~Gi~ 186 (566)
.+|.. -+. +.++.|+ | +| +.++ .-.+ -|+.+.+.+.++.+|+ .|+.
T Consensus 228 ~~p~~----~~~----------ell~~m~-~--~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~ 290 (414)
T TIGR01579 228 IDPED----IDE----------ELLEAIA-S--EKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYA 290 (414)
T ss_pred CChhh----CCH----------HHHHHHH-h--cCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 23322 111 3344443 2 33 3221 1122 4788889999999998 5643
Q ss_pred --CcEEeeecccCCHHH
Q 008423 187 --CPIVPGIMPINNYKG 201 (566)
Q Consensus 187 --vPIIpGImPI~s~~~ 201 (566)
.-+|.|+ |=.|.+.
T Consensus 291 i~~~~IvG~-PgET~ed 306 (414)
T TIGR01579 291 FGTDIIVGF-PGESEED 306 (414)
T ss_pred eeeeEEEEC-CCCCHHH
Confidence 2355555 3344433
No 117
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=74.93 E-value=1e+02 Score=33.78 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=62.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIGP 135 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~~ 135 (566)
|.++.+.+.+.+..+.+.|++.|..+..|-...+..+ ..-....+|++.|++..|. ..|.+. .+|...
T Consensus 166 r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~----~~~~~l~~Ll~~l~~~~g~-~~i~~~~~~p~~i------ 234 (429)
T TIGR00089 166 RSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDL----KGETNLADLLRELSKIDGI-ERIRFGSSHPDDV------ 234 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCC----CCCcCHHHHHHHHhcCCCC-CEEEECCCChhhc------
Confidence 5557789999999998999999886654433211111 0112478888888764342 234332 234321
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEe-------------ccCCCHHHHHHHHHHHHHcCCCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIIT-------------QLFYDTDMFLKFVNDCRQIGITC 187 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT-------------QlffD~d~f~~f~~~~R~~Gi~v 187 (566)
+ .++-.+.++...|..++-- +=-|+.+.+.+.++.+|++|..+
T Consensus 235 ~---------~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i 290 (429)
T TIGR00089 235 T---------DDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDA 290 (429)
T ss_pred C---------HHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 1 2333333332223544311 11378889999999999987333
No 118
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=74.62 E-value=13 Score=40.39 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHhhcCCceeEEec---cccCCHHHHHHHHHHHHHcC----CCEEEEecCCCCCCCCCccccCCCcccHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLT---CTNMPVEKIDHALQTIKSNG----IQNVLALRGDPPHGQDKFVQIQGGFACALD 105 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLT---Crd~n~~~L~~~L~~a~~~G----IrNILaLrGDpp~~~~~~~~~~~~F~~A~d 105 (566)
..+..++..+.+ +|--.++|.. ++..+.+.+...|...+... ++. ++.+ |.. -+...+
T Consensus 58 Vt~~~la~avs~-~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~---~~~~-P~~----------p~l~~~ 122 (368)
T PRK08649 58 VVSPETAIELGK-LGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQE---LYAE-PIK----------PELITE 122 (368)
T ss_pred cCCHHHHHHHHh-CCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHH---hhcC-CCC----------HHHHHH
Confidence 456677777776 6776677732 26778888777776442200 011 1122 211 124677
Q ss_pred HHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc------C----CCHHHHHH
Q 008423 106 LVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL------F----YDTDMFLK 175 (566)
Q Consensus 106 LVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl------f----fD~d~f~~ 175 (566)
+|+.+++. + ..+-+...|. ...++.+.=+++|+|+|+++. . .+...+
T Consensus 123 iv~~~~~~-~--V~v~vr~~~~------------------~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i-- 179 (368)
T PRK08649 123 RIAEIRDA-G--VIVAVSLSPQ------------------RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL-- 179 (368)
T ss_pred HHHHHHhC-e--EEEEEecCCc------------------CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHH--
Confidence 78888763 3 2222222211 235556666789999999843 2 245554
Q ss_pred HHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCC-CCHHHHHHHHHH------HHHHHHHHHH-
Q 008423 176 FVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIK-DNEEAVKAYGIH------LGAEMCKKIL- 247 (566)
Q Consensus 176 f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~k-ddde~vk~~Gv~------la~e~i~~L~- 247 (566)
.+.+++. .+|||.|- +.|.+.++++.+ +|+..= .. -..+.. .....+...|+. -+.+.+++.+
T Consensus 180 -~~~ik~~--~ipVIaG~--V~t~e~A~~l~~-aGAD~V--~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~ 250 (368)
T PRK08649 180 -KEFIYEL--DVPVIVGG--CVTYTTALHLMR-TGAAGV--LV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLD 250 (368)
T ss_pred -HHHHHHC--CCCEEEeC--CCCHHHHHHHHH-cCCCEE--EE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhh
Confidence 4445554 48999866 778887777665 554320 00 001100 000001111121 1222223322
Q ss_pred HcCCCeEEEEcCCchHHHHHHHHHcCC
Q 008423 248 AHGIKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 248 ~~Gv~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
+.|-.++++..-+.-+.-..|.+.|.+
T Consensus 251 ~~~~~~vpVIAdGGI~~~~diakAlal 277 (368)
T PRK08649 251 ETGGRYVHVIADGGIGTSGDIAKAIAC 277 (368)
T ss_pred hhcCCCCeEEEeCCCCCHHHHHHHHHc
Confidence 234457888888877766777777654
No 119
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=74.23 E-value=79 Score=33.41 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEec
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGY 125 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgy 125 (566)
.++.+++...+..+.+.|++.|..-.|.|.-. ..-.++|+++++..+- ..+++..+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----------~dl~~li~~i~~~~~l-~~i~itTN 99 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----------RGCDQLVARLGKLPGL-EELSLTTN 99 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----------ccHHHHHHHHHhCCCC-ceEEEEeC
Confidence 46888999999999999999998777766421 1246788888764331 14555544
No 120
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=74.21 E-value=48 Score=36.89 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CCCccccCCCcccHHHHHHHHHHHcCC-ceeEEEEecCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG-QDKFVQIQGGFACALDLVKHIRSAYGD-YFGITVAGYPEGHPDTIG 134 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~-~~~~~~~~~~F~~A~dLVk~Ir~~~gd-~F~IGVAgyPEgHpe~~~ 134 (566)
|.++.+.+.+.+..+.+.|++.|..+ |+-... +.. .. .-....+|++.|++..+. .+.++ ..+|... +
T Consensus 182 rsr~~e~Il~ei~~l~~~G~keI~l~-g~~~~~yG~d---~~-~~~~l~~Ll~~l~~~~gi~~ir~~-~~~p~~i----~ 251 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARGAKEITLL-GQIVDSYGHD---LP-GRPDLADLLEAVHEIPGLERLRFL-TSHPAWM----T 251 (459)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEe-eecCCCcccc---cC-ChHHHHHHHHHHHhcCCcceEEEE-ecChhhc----C
Confidence 34577889899999988999998755 543211 110 00 112367888888764332 13332 2344322 1
Q ss_pred CCCCCCccchHHHHHHHHHHHHcCCcEE-----------Eecc--CCCHHHHHHHHHHHHHcC
Q 008423 135 PDGVASNESYQSDLLYLKKKVDAGADLI-----------ITQL--FYDTDMFLKFVNDCRQIG 184 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-----------ITQl--ffD~d~f~~f~~~~R~~G 184 (566)
. +.++.|++ ..+|..++ .-.+ -|+.+.+.+.++.+|+.+
T Consensus 252 ~----------ell~~l~~-~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (459)
T PRK14338 252 D----------RLIHAVAR-LPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI 303 (459)
T ss_pred H----------HHHHHHhc-ccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC
Confidence 1 23444433 32333322 1122 378888888899998873
No 121
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.08 E-value=73 Score=33.18 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCE-EEEecCCCCCCCCCccccCCCcccHHHH--HHHH
Q 008423 34 LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQN-VLALRGDPPHGQDKFVQIQGGFACALDL--VKHI 110 (566)
Q Consensus 34 ~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrN-ILaLrGDpp~~~~~~~~~~~~F~~A~dL--Vk~I 110 (566)
....+...+- .+|.++++= +....+.+++..+.+.....|..+ +|+.||-+...+ + . ...+|| +..+
T Consensus 122 ~n~~LL~~~a-~~gkPV~lk-~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~-Y-----~--~~~vdl~~i~~l 191 (266)
T PRK13398 122 QNFELLKEVG-KTKKPILLK-RGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFET-Y-----T--RNTLDLAAVAVI 191 (266)
T ss_pred cCHHHHHHHh-cCCCcEEEe-CCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCC-C-----C--HHHHHHHHHHHH
Confidence 3455555554 368777664 444558889999988888899976 788898643321 1 0 224443 4556
Q ss_pred HHHcCCceeEEE-EecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCc--EEEeccC-----------CCHHHHHHH
Q 008423 111 RSAYGDYFGITV-AGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGAD--LIITQLF-----------YDTDMFLKF 176 (566)
Q Consensus 111 r~~~gd~F~IGV-AgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd--FiITQlf-----------fD~d~f~~f 176 (566)
|+.++ .-||+ ..|-.|..+ .-..-...=+.+||+ +|=+-+. -+++.|.++
T Consensus 192 k~~~~--~pV~~D~sHs~G~~~--------------~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l 255 (266)
T PRK13398 192 KELSH--LPIIVDPSHATGRRE--------------LVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKEL 255 (266)
T ss_pred HhccC--CCEEEeCCCcccchh--------------hHHHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHH
Confidence 66654 45665 444433211 123335556689999 4433332 345556666
Q ss_pred HHHHHH
Q 008423 177 VNDCRQ 182 (566)
Q Consensus 177 ~~~~R~ 182 (566)
++.+|+
T Consensus 256 ~~~i~~ 261 (266)
T PRK13398 256 VDELKP 261 (266)
T ss_pred HHHHHH
Confidence 666664
No 122
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.02 E-value=22 Score=39.56 Aligned_cols=95 Identities=23% Similarity=0.392 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE--EecCCCCCCCCCCCCCCCccc
Q 008423 66 HALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV--AGYPEGHPDTIGPDGVASNES 143 (566)
Q Consensus 66 ~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV--AgyPEgHpe~~~~~~~~~~~~ 143 (566)
+.+..+.++|++-|.+ |...+ .=....+.|+.||++|++ ..|++ ...+
T Consensus 227 ~r~~~L~~aG~d~I~v---d~a~g---------~~~~~~~~i~~i~~~~~~-~~vi~G~v~t~----------------- 276 (450)
T TIGR01302 227 ERAEALVKAGVDVIVI---DSSHG---------HSIYVIDSIKEIKKTYPD-LDIIAGNVATA----------------- 276 (450)
T ss_pred HHHHHHHHhCCCEEEE---ECCCC---------cHhHHHHHHHHHHHhCCC-CCEEEEeCCCH-----------------
Confidence 3444667789886664 33221 112478899999998864 44444 2211
Q ss_pred hHHHHHHHHHHHHcCCcEE----------EeccCCC-----HHHHHHHHHHHHHcCCCCcEEe--eecccC
Q 008423 144 YQSDLLYLKKKVDAGADLI----------ITQLFYD-----TDMFLKFVNDCRQIGITCPIVP--GIMPIN 197 (566)
Q Consensus 144 ~~~dl~~Lk~KvdAGAdFi----------ITQlffD-----~d~f~~f~~~~R~~Gi~vPIIp--GImPI~ 197 (566)
++. +.=++||||+| .|+.+.+ ...+.+..+.+++.+ +|||+ ||.-..
T Consensus 277 --~~a---~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~--vpviadGGi~~~~ 340 (450)
T TIGR01302 277 --EQA---KALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSG--IPVIADGGIRYSG 340 (450)
T ss_pred --HHH---HHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcC--CeEEEeCCCCCHH
Confidence 233 33346999999 4665543 233344444455444 89999 876433
No 123
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=73.60 E-value=59 Score=33.44 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=23.6
Q ss_pred HcCCcEEEeccCCCHHHHHHHHHHHHHcCCC---CcEE
Q 008423 156 DAGADLIITQLFYDTDMFLKFVNDCRQIGIT---CPIV 190 (566)
Q Consensus 156 dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~---vPII 190 (566)
++|+|.|+... +......|++.+++.|.+ +|+.
T Consensus 185 ~~~~d~v~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 220 (333)
T cd06331 185 AAGPDVVLSTL--VGDSNVAFYRQFAAAGLDADRIPIL 220 (333)
T ss_pred HcCCCEEEEec--CCCChHHHHHHHHHcCCCcCCCeeE
Confidence 47899888543 444446799999999986 5544
No 124
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=72.84 E-value=74 Score=32.54 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHH---HcCCceeE-EEEecCCCCCCCCCCCCCCCccch
Q 008423 69 QTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRS---AYGDYFGI-TVAGYPEGHPDTIGPDGVASNESY 144 (566)
Q Consensus 69 ~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~---~~gd~F~I-GVAgyPEgHpe~~~~~~~~~~~~~ 144 (566)
.-+.+.|.+++.+|.-|.+- +.++++.+++ +.| .+| +...||.+- .+ .
T Consensus 130 ~~~~~~~~~~vail~~~~~~--------------g~~~~~~~~~~~~~~G--~~vv~~~~~~~~~---~d---------~ 181 (312)
T cd06346 130 QLAAERGYKSVATTYINNDY--------------GVGLADAFTKAFEALG--GTVTNVVAHEEGK---SS---------Y 181 (312)
T ss_pred HHHHHcCCCeEEEEEccCch--------------hhHHHHHHHHHHHHcC--CEEEEEEeeCCCC---CC---------H
Confidence 34467799999988755331 2223333322 344 333 344555432 22 2
Q ss_pred HHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEee
Q 008423 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 145 ~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
...+.+|+ ++++|.|+.-.. ......|++.+++.|++.|++.+
T Consensus 182 ~~~v~~l~---~~~pd~v~~~~~--~~~~~~~~~~~~~~G~~~~~~~~ 224 (312)
T cd06346 182 SSEVAAAA---AGGPDALVVIGY--PETGSGILRSAYEQGLFDKFLLT 224 (312)
T ss_pred HHHHHHHH---hcCCCEEEEecc--cchHHHHHHHHHHcCCCCceEee
Confidence 24566665 468998886443 33667789999999998887653
No 125
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=72.07 E-value=1.2e+02 Score=31.73 Aligned_cols=127 Identities=12% Similarity=0.140 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeE--EEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGI--TVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~I--GVAgyPEgHpe~~~~~ 136 (566)
.+.+.+++.++.+.+.||+.|+++. - .|+. ..-..+.=.+|++...+.....+.| ||.+. +
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~G-s---tGE~---~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~--------~-- 80 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGG-T---SGEP---GSLTLEERKQAIENAIDQIAGRIPFAPGTGAL--------N-- 80 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-c---Cccc---ccCCHHHHHHHHHHHHHHhCCCCcEEEECCcc--------h--
Confidence 3789999999999999999999664 1 1211 1112223456777665544433333 33321 1
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcE-EEeccCC---CHHHHHHHHHHHHHcCC-CCcEEeeecccCCHHHHHHHhccCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADL-IITQLFY---DTDMFLKFVNDCRQIGI-TCPIVPGIMPINNYKGFLRMTGFCKT 211 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---D~d~f~~f~~~~R~~Gi-~vPIIpGImPI~s~~~~~r~~~l~Gv 211 (566)
.++-++..+.=.++|||. +++.++| +.+.+.+|.+.+-++ . ++||+.==.|- .+|+
T Consensus 81 -------t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a-~~~lpv~iYn~P~-----------~tg~ 141 (294)
T TIGR02313 81 -------HDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADA-VPDFPIIIYNIPG-----------RAAQ 141 (294)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHh-ccCCCEEEEeCch-----------hcCc
Confidence 113344444446789995 4555656 346677776666544 3 57775432221 2455
Q ss_pred CCCHHHHHHh
Q 008423 212 KIPAEITAAL 221 (566)
Q Consensus 212 ~VP~~il~~L 221 (566)
.+|.+++.+|
T Consensus 142 ~l~~~~l~~L 151 (294)
T TIGR02313 142 EIAPKTMARL 151 (294)
T ss_pred CCCHHHHHHH
Confidence 5555555555
No 126
>PRK05926 hypothetical protein; Provisional
Probab=71.48 E-value=14 Score=40.21 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV 122 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV 122 (566)
++.++|.+....+ +.|++.|+.+.|..|. -.+++..++++.|++.+++ ..+.+
T Consensus 99 ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~---------~~~e~~~e~i~~Ik~~~p~-i~i~a 151 (370)
T PRK05926 99 YTPDQLVQSIKEN-PSPITETHIVAGCFPS---------CNLAYYEELFSKIKQNFPD-LHIKA 151 (370)
T ss_pred CCHHHHHHHHHHH-hcCCCEEEEEeCcCCC---------CCHHHHHHHHHHHHHhCCC-eeEEE
Confidence 3678888888887 6999999999998863 2567889999999988763 55543
No 127
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=71.44 E-value=64 Score=33.70 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe-------cCCC----C------CCCCCccc
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL-------RGDP----P------HGQDKFVQ 95 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL-------rGDp----p------~~~~~~~~ 95 (566)
+...++++.+++...+++..-|+- +...+.+....+.++|++.|.+. .=|+ + +.+...-.
T Consensus 154 ~~~~~iv~~v~~~~~~Pv~vKl~~---~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s 230 (299)
T cd02940 154 ELVEEICRWVREAVKIPVIAKLTP---NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS 230 (299)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCC---CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence 457788888887778888888763 34467788888899999988742 1111 1 00000000
Q ss_pred cCCCcccHHHHHHHHHHHcCCce-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE--EeccCC-CHH
Q 008423 96 IQGGFACALDLVKHIRSAYGDYF-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI--ITQLFY-DTD 171 (566)
Q Consensus 96 ~~~~F~~A~dLVk~Ir~~~gd~F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQlff-D~d 171 (566)
-+..+..+.+.|+.+++..+..+ -||+.+-- + -+...+.+.|||+.+ -|-++| .++
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~-------~-------------~~da~~~l~aGA~~V~i~ta~~~~g~~ 290 (299)
T cd02940 231 GPAVKPIALRAVSQIARAPEPGLPISGIGGIE-------S-------------WEDAAEFLLLGASVVQVCTAVMNQGFT 290 (299)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-------C-------------HHHHHHHHHcCCChheEceeecccCCc
Confidence 11234457899999998774223 34444321 1 222445567999964 588888 777
Q ss_pred HHHHHH
Q 008423 172 MFLKFV 177 (566)
Q Consensus 172 ~f~~f~ 177 (566)
.+.+..
T Consensus 291 ~~~~i~ 296 (299)
T cd02940 291 IVDDMC 296 (299)
T ss_pred HHHHHh
Confidence 766644
No 128
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=71.27 E-value=1.2e+02 Score=30.99 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=77.5
Q ss_pred CCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecC
Q 008423 47 CVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYP 126 (566)
Q Consensus 47 Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyP 126 (566)
.....|=+-|- +...|.+.|.++.++|++.+-.=-=| | ++ ...+....+.|+.||+... |.+
T Consensus 12 ~~~I~pSil~a--d~~~l~~el~~l~~~g~d~lHiDVMD----G-~F---VPNitfGp~~i~~i~~~~~--~Dv------ 73 (228)
T PRK08091 12 QQPISVGILAS--NWLKFNETLTTLSENQLRLLHFDIAD----G-QF---SPFFTVGAIAIKQFPTHCF--KDV------ 73 (228)
T ss_pred CCeEEeehhhc--CHHHHHHHHHHHHHCCCCEEEEeccC----C-Cc---CCccccCHHHHHHhCCCCC--EEE------
Confidence 44555655554 56788899999999999887742111 1 11 1235567888888874221 322
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeec--ccCCHHHHHH
Q 008423 127 EGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIM--PINNYKGFLR 204 (566)
Q Consensus 127 EgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm--PI~s~~~~~r 204 (566)
|--..++ .+++.+=++||||.|.=+.== .....+.++.+|+.|+ ++-+||. |-++...+..
T Consensus 74 --HLMv~~P------------~~~i~~~~~aGad~It~H~Ea-~~~~~~~l~~Ik~~g~--~~kaGlalnP~Tp~~~i~~ 136 (228)
T PRK08091 74 --HLMVRDQ------------FEVAKACVAAGADIVTLQVEQ-THDLALTIEWLAKQKT--TVLIGLCLCPETPISLLEP 136 (228)
T ss_pred --EeccCCH------------HHHHHHHHHhCCCEEEEcccC-cccHHHHHHHHHHCCC--CceEEEEECCCCCHHHHHH
Confidence 3222232 356677778999977644321 2346788999999994 3456665 6677766665
Q ss_pred Hh
Q 008423 205 MT 206 (566)
Q Consensus 205 ~~ 206 (566)
+.
T Consensus 137 ~l 138 (228)
T PRK08091 137 YL 138 (228)
T ss_pred HH
Confidence 44
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.24 E-value=1.2e+02 Score=30.41 Aligned_cols=116 Identities=9% Similarity=0.101 Sum_probs=72.7
Q ss_pred EeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC
Q 008423 53 HLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT 132 (566)
Q Consensus 53 HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~ 132 (566)
|.....++.++..+.+..+.++||.-|=+=.|-+++.. .-.....++++.+++..+ ...+.+-+ +.+
T Consensus 10 q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-------p~~~~~~~~i~~l~~~~~-~~~~~~l~-~~~---- 76 (265)
T cd03174 10 QSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-------PQMEDDWEVLRAIRKLVP-NVKLQALV-RNR---- 76 (265)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-------ccCCCHHHHHHHHHhccC-CcEEEEEc-cCc----
Confidence 33455678889999999999999998887666655321 123357888888887553 23443333 222
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC---------------HHHHHHHHHHHHHcCCCCcEEeeecccC
Q 008423 133 IGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD---------------TDMFLKFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 133 ~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD---------------~d~f~~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
.+.+++..++|++.+..=+--+ .+...+.++.+++.|+ ++...++.+.
T Consensus 77 ---------------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~--~v~~~~~~~~ 139 (265)
T cd03174 77 ---------------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL--EVEGSLEDAF 139 (265)
T ss_pred ---------------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeec
Confidence 1224455568887654433322 5667778888888884 4666666555
Q ss_pred C
Q 008423 198 N 198 (566)
Q Consensus 198 s 198 (566)
.
T Consensus 140 ~ 140 (265)
T cd03174 140 G 140 (265)
T ss_pred C
Confidence 4
No 130
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=71.22 E-value=1.2e+02 Score=30.98 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=81.2
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQ 90 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~ 90 (566)
..+.+..++.|++-.-+ .. .....+...+++ .|+.+-.=|.+ +.+.+.+...|. -+.-||+++-+|-.+|
T Consensus 76 ~~~~~aGad~it~H~Ea--~~-~~~~~~i~~Ik~-~G~kaGlalnP-~T~~~~l~~~l~-----~vD~VLvMsV~PGf~G 145 (229)
T PRK09722 76 DQLADAGADFITLHPET--IN-GQAFRLIDEIRR-AGMKVGLVLNP-ETPVESIKYYIH-----LLDKITVMTVDPGFAG 145 (229)
T ss_pred HHHHHcCCCEEEECccC--Cc-chHHHHHHHHHH-cCCCEEEEeCC-CCCHHHHHHHHH-----hcCEEEEEEEcCCCcc
Confidence 34555667776665433 21 124566677775 78888777766 346677776665 3688999999886554
Q ss_pred CCccccCCCcc-cHHHHHHHHHHH---cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE--e
Q 008423 91 DKFVQIQGGFA-CALDLVKHIRSA---YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII--T 164 (566)
Q Consensus 91 ~~~~~~~~~F~-~A~dLVk~Ir~~---~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI--T 164 (566)
. .|. .+.+=|+.+|+. .+..+.|.|=|-= ..+.+++=.+||||.+| |
T Consensus 146 Q-------~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI--------------------~~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 146 Q-------PFIPEMLDKIAELKALRERNGLEYLIEVDGSC--------------------NQKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred h-------hccHHHHHHHHHHHHHHHhcCCCeEEEEECCC--------------------CHHHHHHHHHcCCCEEEECh
Confidence 3 344 356656555543 3434667776511 13455666789999998 4
Q ss_pred ccCCC-HHHHHHHHHHHHH
Q 008423 165 QLFYD-TDMFLKFVNDCRQ 182 (566)
Q Consensus 165 QlffD-~d~f~~f~~~~R~ 182 (566)
-.+|. .+.+.+-++.+|+
T Consensus 199 s~iF~~~~d~~~~i~~l~~ 217 (229)
T PRK09722 199 SGLFNLDEDIDEAWDIMTA 217 (229)
T ss_pred HHHcCCCCCHHHHHHHHHH
Confidence 43443 3335555555554
No 131
>PRK10425 DNase TatD; Provisional
Probab=71.17 E-value=28 Score=35.83 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=64.7
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
++=.||+.... ...+++.|.+|+++||..+++++-|+. .+..+.+ +.+.++. ...++..+|.-
T Consensus 3 DtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~~~~~~~-----------~~~~~~~----l~~~~~~-v~~~~GiHP~~ 65 (258)
T PRK10425 3 DIGVNLTSSQF-AKDRDDVVARAFAAGVNGMLITGTNLR-----------ESQQAQK----LARQYPS-CWSTAGVHPHD 65 (258)
T ss_pred EeeeCcCChhh-hccHHHHHHHHHHCCCCEEEEeCCCHH-----------HHHHHHH----HHHhCCC-EEEEEEeCcCc
Confidence 45567764333 256788899999999999998876642 1222333 3345653 66778888854
Q ss_pred CCCCCCCCCCCCccchHHHHHHHHHHH---------HcCCcEEEeccCCC--HHHHHHHHHHHHHcCCCCcEEe
Q 008423 129 HPDTIGPDGVASNESYQSDLLYLKKKV---------DAGADLIITQLFYD--TDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 129 Hpe~~~~~~~~~~~~~~~dl~~Lk~Kv---------dAGAdFiITQlffD--~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
-++.. + .+++.|.+-+ +.|=||.-..--.+ .+.|.++++.+++.+ .||+.
T Consensus 66 ~~~~~--~---------~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~--~Pv~i 126 (258)
T PRK10425 66 SSQWQ--A---------ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELN--MPVFM 126 (258)
T ss_pred cccCC--H---------HHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhC--CCeEE
Confidence 22211 1 3444444322 23567753211112 356777788877765 77753
No 132
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.81 E-value=1.3e+02 Score=30.97 Aligned_cols=128 Identities=10% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc--eeEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY--FGITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~--F~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+++.+..+.+.||+.|+++. .- |+.+ .-..+.=..+++...+..+.. .-+||.+.
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~G-st---GE~~---~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~----------- 77 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVG-TT---GESP---TLSHEEHKKVIEFVVDLVNGRVPVIAGTGSN----------- 77 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-cC---cccc---cCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc-----------
Confidence 4788999999999999999999652 21 2211 111223455666655543332 33444321
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEEE-eccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLII-TQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
+.++-++..+.=.++|||.++ +-++| +.+.+.+|.+.+-++ .++||+.==.|- .+|+.
T Consensus 78 ------s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~-~~~pi~lYn~P~-----------~tg~~ 139 (285)
T TIGR00674 78 ------ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEE-VDLPIILYNVPS-----------RTGVS 139 (285)
T ss_pred ------cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEECcH-----------HhcCC
Confidence 112345555555678999644 33444 457777877777654 368887555552 24666
Q ss_pred CCHHHHHHhC
Q 008423 213 IPAEITAALE 222 (566)
Q Consensus 213 VP~~il~~Le 222 (566)
++.+++++|.
T Consensus 140 l~~~~l~~L~ 149 (285)
T TIGR00674 140 LYPETVKRLA 149 (285)
T ss_pred CCHHHHHHHH
Confidence 6666666664
No 133
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=70.78 E-value=1.2e+02 Score=31.38 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA 113 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~ 113 (566)
.++.+++...+..+...|++.|...+|+|--. .. -.++|+++++.
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~--------~~---l~~iv~~l~~~ 83 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITGGEPLLR--------KD---LIEIIRRIKDY 83 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECcccccc--------cC---HHHHHHHHHhC
Confidence 57889999999989999999988877776431 12 35788888753
No 134
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=70.31 E-value=1.1e+02 Score=31.21 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=37.2
Q ss_pred HHHHHH-HHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccC--CHHHHHHHh------ccCCCCCCHH
Q 008423 146 SDLLYL-KKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPIN--NYKGFLRMT------GFCKTKIPAE 216 (566)
Q Consensus 146 ~dl~~L-k~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~--s~~~~~r~~------~l~Gv~VP~~ 216 (566)
..+.++ +.-.++||||+-|.+--+.+.+.+..+. ..+||++ +=.|+ ++..+..+. -..|+.+-..
T Consensus 156 ~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~-----~~iPVva-~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~ 229 (258)
T TIGR01949 156 ELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG-----CPAPVVV-AGGPKTNSDREFLQMIKDAMEAGAAGVAVGRN 229 (258)
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh-----CCCcEEE-ecCCCCCCHHHHHHHHHHHHHcCCcEEehhhH
Confidence 345553 5666899999999865555666554443 2477754 23344 444333222 2335555555
Q ss_pred HH
Q 008423 217 IT 218 (566)
Q Consensus 217 il 218 (566)
++
T Consensus 230 i~ 231 (258)
T TIGR01949 230 IF 231 (258)
T ss_pred hh
Confidence 54
No 135
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=70.29 E-value=1.2e+02 Score=33.76 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=61.9
Q ss_pred CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC--CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHH
Q 008423 75 GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG--DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLK 152 (566)
Q Consensus 75 GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g--d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk 152 (566)
+|+.|..-.|.|..- .-....+|++.|++.++ ....+.+-++|..- +. +.++.|+
T Consensus 102 ~v~~I~fgGGtP~~l---------~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l----~~----------e~l~~lk 158 (455)
T TIGR00538 102 HVSQLHWGGGTPTYL---------SPEQISRLMKLIRENFPFNADAEISIEIDPRYI----TK----------DVIDALR 158 (455)
T ss_pred ceEEEEECCCCcCCC---------CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcC----CH----------HHHHHHH
Confidence 777877666666421 12347888888987653 22456677777532 11 2344333
Q ss_pred HHHHcCCcEE-Ee-c-----------cCCCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHH
Q 008423 153 KKVDAGADLI-IT-Q-----------LFYDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFL 203 (566)
Q Consensus 153 ~KvdAGAdFi-IT-Q-----------lffD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~ 203 (566)
++|.+.+ |- | =.++.+.+.+-++.++++|++ +-+|.|+ |=+|...+.
T Consensus 159 ---~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl-Pgqt~e~~~ 221 (455)
T TIGR00538 159 ---DEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGL-PKQTKESFA 221 (455)
T ss_pred ---HcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeC-CCCCHHHHH
Confidence 3687654 11 1 136778888899999999974 4467776 556665554
No 136
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=70.11 E-value=1.2e+02 Score=31.43 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=86.1
Q ss_pred cccccchhhccCCCcCEEEecCCC--------CCCCchhHHH----HHHHHHhhcCCceeEEeccccC-CHHHHHHHHHH
Q 008423 4 RTCSSGWTAWWPTTRHSATSRWGA--------GGSTADLTLD----IANRMQNTICVETMMHLTCTNM-PVEKIDHALQT 70 (566)
Q Consensus 4 ~~~~~~~~~~~~~~p~fVsVTwga--------gG~~~~~Sl~----la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~ 70 (566)
|...++..+.+....+.|.+.... -+.+...+++ +++.+++ .|+.+..++.+.-+ +.+.+.+....
T Consensus 71 r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~-~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS-KGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 556777888888888887776532 2334444443 4456664 69999999976555 56888899999
Q ss_pred HHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHH
Q 008423 71 IKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLY 150 (566)
Q Consensus 71 a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~ 150 (566)
+.++|+..|- | .|..... .-....++++.|++.++ ..|++-++= +.. .-+..
T Consensus 150 ~~~~g~~~i~-l-~Dt~G~~--------~P~~v~~~~~~~~~~~~--~~i~~H~Hn-------~~G---------la~an 201 (262)
T cd07948 150 VDKLGVNRVG-I-ADTVGIA--------TPRQVYELVRTLRGVVS--CDIEFHGHN-------DTG---------CAIAN 201 (262)
T ss_pred HHHcCCCEEE-E-CCcCCCC--------CHHHHHHHHHHHHHhcC--CeEEEEECC-------CCC---------hHHHH
Confidence 9999999764 3 3332111 11137889999998775 455554322 111 33556
Q ss_pred HHHHHHcCCcEEEecc
Q 008423 151 LKKKVDAGADLIITQL 166 (566)
Q Consensus 151 Lk~KvdAGAdFiITQl 166 (566)
...=+++||+.|=+-+
T Consensus 202 ~~~a~~aG~~~vd~s~ 217 (262)
T cd07948 202 AYAALEAGATHIDTTV 217 (262)
T ss_pred HHHHHHhCCCEEEEec
Confidence 6666789999765543
No 137
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=69.63 E-value=85 Score=32.49 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEEEecCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGVAgyPEgHpe~~~~~~ 137 (566)
++..|....+.+..-|.+.+|+=.|--+++. -.|..-.|+++++++++|- .+++|+.-
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~-------VPl~kf~d~lK~lke~~~l~inaHvGfvd------------- 99 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGK-------VPLWKFKDELKALKERTGLLINAHVGFVD------------- 99 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCC-------ccHHHHHHHHHHHHHhhCeEEEEEeeecc-------------
Confidence 4477778888899999999997766666542 2455578899999998762 24555442
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHH-------------HHHHHHHcCCCC-c-EEeeec
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLK-------------FVNDCRQIGITC-P-IVPGIM 194 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~-------------f~~~~R~~Gi~v-P-IIpGIm 194 (566)
+.++++||+ +++|.+---+|-|.+.+.+ =++.+.+.|+.+ | |+.|+-
T Consensus 100 -------E~~~eklk~---~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 -------ESDLEKLKE---ELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred -------HHHHHHHHH---hcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 145665654 6899888888888776544 344456778762 3 566664
No 138
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=69.52 E-value=92 Score=32.06 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII 190 (566)
..+.+|+ .+++|.|+..... +....|++.+++.|.+.|++
T Consensus 181 ~~v~~l~---~~~~d~v~~~~~~--~~~~~~~~~~~~~g~~~~~~ 220 (340)
T cd06349 181 PTITRLR---DANPDAIILISYY--NDGAPIARQARAVGLDIPVV 220 (340)
T ss_pred HHHHHHH---hcCCCEEEEcccc--chHHHHHHHHHHcCCCCcEE
Confidence 3444443 4699999887754 34567999999999998875
No 139
>PLN02334 ribulose-phosphate 3-epimerase
Probab=69.41 E-value=1.3e+02 Score=30.14 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=59.9
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHH--HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCC-C
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTL--DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGD-P 86 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl--~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGD-p 86 (566)
.+++.+...+++.+-.--+.-....++ +++..+++......-.||-+.+.+ ..+..+.++|..-|.+--|- .
T Consensus 26 l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~-----d~~~~~~~~gad~v~vH~~q~~ 100 (229)
T PLN02334 26 AKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPE-----DYVPDFAKAGASIFTFHIEQAS 100 (229)
T ss_pred HHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHH-----HHHHHHHHcCCCEEEEeecccc
Confidence 456666677777774433221222233 778888876566667888886532 34566677898888766662 2
Q ss_pred CCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 87 PHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 87 p~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
.. .....++.+++ .| +.+|++.+|..
T Consensus 101 ~d-------------~~~~~~~~i~~-~g--~~iGls~~~~t 126 (229)
T PLN02334 101 TI-------------HLHRLIQQIKS-AG--MKAGVVLNPGT 126 (229)
T ss_pred ch-------------hHHHHHHHHHH-CC--CeEEEEECCCC
Confidence 11 23445556653 33 68999998753
No 140
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=69.20 E-value=1e+02 Score=33.03 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=70.0
Q ss_pred ccchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCC
Q 008423 7 SSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGD 85 (566)
Q Consensus 7 ~~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGD 85 (566)
.++..+......+.|-|..+. +-.+.+.+.+..+++ .|++++.-+....+ +.+.+.+.++.+.++|+..|-+. |
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~--~e~~~~~~~i~~ak~-~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--D 165 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHC--TEADVSEQHIGLARE-LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--D 165 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEec--chHHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--C
Confidence 445556666667776665422 123457777888885 79999988887766 67899999999999999876532 3
Q ss_pred CCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEe
Q 008423 86 PPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 86 pp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAg 124 (566)
.... ..-....++|+.+++..++...||+-+
T Consensus 166 T~G~--------~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 166 SAGA--------LLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCC--------CCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 2211 011137888999998875456676654
No 141
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=69.11 E-value=1.1e+02 Score=32.84 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=71.0
Q ss_pred cccchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecC
Q 008423 6 CSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRG 84 (566)
Q Consensus 6 ~~~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrG 84 (566)
+.++.........+.|-|..+. +-.+.+.+.++.+++ .|++++.-+.+..+ +.+.+.+..+.+.+.|+..|-+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~--~e~d~~~~~i~~ak~-~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~-- 163 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHC--TEADVSEQHIGMARE-LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV-- 163 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEecc--chHHHHHHHHHHHHH-cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc--
Confidence 3455666666677777766532 123457778888875 79999888776665 67889999999999999876532
Q ss_pred CCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEe
Q 008423 85 DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 85 Dpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAg 124 (566)
|.... ..-....++|+.+|+..++...||+-+
T Consensus 164 DT~G~--------~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 164 DSAGA--------MLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred cCCCC--------CCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 22110 111237788999998876556777655
No 142
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.60 E-value=81 Score=34.96 Aligned_cols=143 Identities=14% Similarity=0.192 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc--cHHHH---HHH
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA--CALDL---VKH 109 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~--~A~dL---Vk~ 109 (566)
.-++|..+.+. |-=-++| + +++.+++.+.+..+++.--.+-+...+|-... ....+. ..+++ ++-
T Consensus 55 ~~~lA~AvA~a-GGlGvI~--~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~------~~~~~t~~~~~~~~~~~~d 124 (404)
T PRK06843 55 ESQMAIAIAKE-GGIGIIH--K-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQ------KPEIFTAKQHLEKSDAYKN 124 (404)
T ss_pred CHHHHHHHHHC-CCEEEec--C-CCCHHHHHHHHHHHHhhcCCCceeeccccccc------chhheeccccchHHHHHhh
Confidence 45666666654 4444667 2 68999999999988764211222233333110 000000 01111 111
Q ss_pred H--HHHc-------CCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE--eccCCCHHHHHHHHH
Q 008423 110 I--RSAY-------GDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII--TQLFYDTDMFLKFVN 178 (566)
Q Consensus 110 I--r~~~-------gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI--TQlffD~d~f~~f~~ 178 (566)
+ ++.+ ...+.+|+|..+.. ..+++.++=++||||+|+ +--- +.+.+.++++
T Consensus 125 ~~~~~~~~~a~~d~~~~l~v~aavg~~~-----------------~~~~~v~~lv~aGvDvI~iD~a~g-~~~~~~~~v~ 186 (404)
T PRK06843 125 AEHKEDFPNACKDLNNKLRVGAAVSIDI-----------------DTIERVEELVKAHVDILVIDSAHG-HSTRIIELVK 186 (404)
T ss_pred hhhhhhcchhhhhhhcCeEEEEEEeCCH-----------------HHHHHHHHHHhcCCCEEEEECCCC-CChhHHHHHH
Confidence 1 1111 12467888876521 356777777889999998 4332 3567788899
Q ss_pred HHHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 179 DCRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 179 ~~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
.+|+.-.+++|+.|- +.|+...+++.+
T Consensus 187 ~ik~~~p~~~vi~g~--V~T~e~a~~l~~ 213 (404)
T PRK06843 187 KIKTKYPNLDLIAGN--IVTKEAALDLIS 213 (404)
T ss_pred HHHhhCCCCcEEEEe--cCCHHHHHHHHH
Confidence 999865568887764 567776665544
No 143
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=68.58 E-value=1.6e+02 Score=30.94 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~ 140 (566)
.++|+..+..+...+..-|..-.|+|.- ...+.-.+|++.+++ ++....|.+.+.|+..++
T Consensus 63 ~~qi~~~~~~~~~~~~~~iyf~ggt~t~---------l~~~~L~~l~~~i~~-~~~~~~isi~trpd~l~~--------- 123 (302)
T TIGR01212 63 KEQIKKQMKKYKKDKKFIAYFQAYTNTY---------APVEVLKEMYEQALS-YDDVVGLSVGTRPDCVPD--------- 123 (302)
T ss_pred HHHHHHHHHHhhccCEEEEEEECCCcCC---------CCHHHHHHHHHHHhC-CCCEEEEEEEecCCcCCH---------
Confidence 3556666665555543224444444432 123345667777765 443334555556654421
Q ss_pred ccchHHHHHHHHHHHHcCCcE-E--Eecc-----------CCCHHHHHHHHHHHHHcCCC
Q 008423 141 NESYQSDLLYLKKKVDAGADL-I--ITQL-----------FYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 141 ~~~~~~dl~~Lk~KvdAGAdF-i--ITQl-----------ffD~d~f~~f~~~~R~~Gi~ 186 (566)
+.++.|++=.++|.+. + =-|= .++.+.+.+-++.++++|+.
T Consensus 124 -----e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~ 178 (302)
T TIGR01212 124 -----EVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIK 178 (302)
T ss_pred -----HHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCE
Confidence 3344555434567742 2 2233 35677788888899998864
No 144
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=68.38 E-value=1.2e+02 Score=31.15 Aligned_cols=88 Identities=16% Similarity=0.295 Sum_probs=51.3
Q ss_pred HHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHH
Q 008423 71 IKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLY 150 (566)
Q Consensus 71 a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~ 150 (566)
+.+.|++++.+|.-|.+ ++.++.+.+++..+.. -++...+|.+- .| ....+.+
T Consensus 129 ~~~~g~~~vail~~~~~--------------~g~~~~~~~~~~~~~~-v~~~~~~~~~~---~d---------~~~~i~~ 181 (333)
T cd06359 129 AQDKGYKRVFLIAPNYQ--------------AGKDALAGFKRTFKGE-VVGEVYTKLGQ---LD---------FSAELAQ 181 (333)
T ss_pred HHHhCCCeEEEEecCch--------------hhHHHHHHHHHHhCce-eeeeecCCCCC---cc---------hHHHHHH
Confidence 35678888888864432 1233444454444311 22333333221 22 2245555
Q ss_pred HHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC--CCcEE
Q 008423 151 LKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGI--TCPIV 190 (566)
Q Consensus 151 Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi--~vPII 190 (566)
|+ ++++|+|+.. +..+....|++.+++.|+ ++|++
T Consensus 182 l~---~~~pd~v~~~--~~~~~~~~~~~~~~~~G~~~~~~~~ 218 (333)
T cd06359 182 IR---AAKPDAVFVF--LPGGMGVNFVKQYRQAGLKKDIPLY 218 (333)
T ss_pred HH---hCCCCEEEEE--ccCccHHHHHHHHHHcCcccCCeee
Confidence 54 4799999874 444557789999999998 77765
No 145
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=67.82 E-value=48 Score=35.19 Aligned_cols=125 Identities=14% Similarity=0.249 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhhcC-----CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC---CccccCCCc----
Q 008423 33 DLTLDIANRMQNTIC-----VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD---KFVQIQGGF---- 100 (566)
Q Consensus 33 ~~Sl~la~~lq~~~G-----le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~---~~~~~~~~F---- 100 (566)
+...++.+.+++... +++..-|++ +.+.+++.+..+.+.++|++-|.+..+-...... ......++|
T Consensus 183 ~~~~~iv~av~~~~~~~~~~~Pv~vKl~~-~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~ 261 (327)
T cd04738 183 EALRELLTAVKEERNKLGKKVPLLVKIAP-DLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP 261 (327)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeEEEeCC-CCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChh
Confidence 445677777777665 889999985 6677778888888899999998765432111000 000011233
Q ss_pred --ccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCC-HHHHHH
Q 008423 101 --ACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYD-TDMFLK 175 (566)
Q Consensus 101 --~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD-~d~f~~ 175 (566)
..+.+.|+.+++..+..+.|-++| |- .+ -+...+.+.+|||. +-|.++++ +..+.+
T Consensus 262 ~~~~~l~~v~~l~~~~~~~ipIi~~G---GI---~t-------------~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~ 322 (327)
T cd04738 262 LKERSTEVLRELYKLTGGKIPIIGVG---GI---SS-------------GEDAYEKIRAGASLVQLYTGLVYEGPGLVKR 322 (327)
T ss_pred hhHHHHHHHHHHHHHhCCCCcEEEEC---CC---CC-------------HHHHHHHHHcCCCHHhccHHHHhhCcHHHHH
Confidence 346788988988765334443333 11 11 22234555699996 56777775 777766
Q ss_pred HH
Q 008423 176 FV 177 (566)
Q Consensus 176 f~ 177 (566)
..
T Consensus 323 i~ 324 (327)
T cd04738 323 IK 324 (327)
T ss_pred HH
Confidence 44
No 146
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=67.67 E-value=1.2e+02 Score=34.16 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCCchhHHHHHHHHHhhcCCceeEEec-c-----cc---------CCHH-HHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 28 GGSTADLTLDIANRMQNTICVETMMHLT-C-----TN---------MPVE-KIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 28 gG~~~~~Sl~la~~lq~~~Gle~i~HLT-C-----rd---------~n~~-~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
|+..+..++.++..+.. ++++.|..-+ + +. .+.. +....+.-.+..|.+.|-+|.-|..-+ .
T Consensus 124 G~~sS~~s~ava~~~~~-~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG-~ 201 (510)
T cd06364 124 GATGSGVSTAVANLLGL-FYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYG-R 201 (510)
T ss_pred CCCchhHHHHHHHHhcc-ccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEecCcch-H
Confidence 33445556777766654 6766654211 1 11 0111 222323334678999987775443221 0
Q ss_pred CccccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCCCCCCCCccchHHHHHHHHHHHH-cCCcEEEeccCCC
Q 008423 92 KFVQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIGPDGVASNESYQSDLLYLKKKVD-AGADLIITQLFYD 169 (566)
Q Consensus 92 ~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD 169 (566)
..+..+.+.++ +.| .||... .+|.... + .++..+..|++ ++|+.||. +..
T Consensus 202 ---------~~~~~~~~~~~-~~G--i~I~~~~~i~~~~~-----~---------~d~~~~l~klk~~~a~vVvl--~~~ 253 (510)
T cd06364 202 ---------PGIEKFREEAE-ERD--ICIDFSELISQYSD-----E---------EEIQRVVEVIQNSTAKVIVV--FSS 253 (510)
T ss_pred ---------HHHHHHHHHHH-HCC--cEEEEEEEeCCCCC-----H---------HHHHHHHHHHHhcCCeEEEE--EeC
Confidence 01233334443 344 565433 2333211 1 44555444444 48999884 455
Q ss_pred HHHHHHHHHHHHHcCCCCcEEee
Q 008423 170 TDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 170 ~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
.+....+++.+++.|++-++..|
T Consensus 254 ~~~~~~ll~qa~~~g~~~~iwI~ 276 (510)
T cd06364 254 GPDLEPLIKEIVRRNITGKIWLA 276 (510)
T ss_pred cHHHHHHHHHHHHhCCCCcEEEE
Confidence 56678889999999988777544
No 147
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=67.49 E-value=41 Score=36.96 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=70.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEE-EEecCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGIT-VAGYPEGHPDTIGP 135 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IG-VAgyPEgHpe~~~~ 135 (566)
|.++.+.+.+.+..+.+.|++.|..+.-|-...+.. . ..-.+..+|++.|++..+..+ +. ...+|... +
T Consensus 162 r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d---~-~~~~~l~~Ll~~i~~~~~i~~-~r~~~~~p~~~----~- 231 (430)
T TIGR01125 162 RSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKD---L-YRESKLVDLLEELGKVGGIYW-IRMHYLYPDEL----T- 231 (430)
T ss_pred eecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccC---C-CCcccHHHHHHHHHhcCCccE-EEEccCCcccC----C-
Confidence 445678888888988889999987653343222110 0 011358899998876422222 22 12334321 1
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEE--ecc-----------CCCHHHHHHHHHHHHHcCCCC----cEEeeecccCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLII--TQL-----------FYDTDMFLKFVNDCRQIGITC----PIVPGIMPINN 198 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiI--TQl-----------ffD~d~f~~f~~~~R~~Gi~v----PIIpGImPI~s 198 (566)
.++-.+.++...|+.++- -|= -|+.+.+.+.++.+|+++..+ -+|.|. |=.|
T Consensus 232 ----------~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~-PgET 300 (430)
T TIGR01125 232 ----------DDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGF-PGET 300 (430)
T ss_pred ----------HHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEEC-CCCC
Confidence 233333333211244431 121 377888999999999985443 356664 5566
Q ss_pred HHHHHHH
Q 008423 199 YKGFLRM 205 (566)
Q Consensus 199 ~~~~~r~ 205 (566)
.+.+.+.
T Consensus 301 ~e~~~~t 307 (430)
T TIGR01125 301 EEDFQEL 307 (430)
T ss_pred HHHHHHH
Confidence 6655543
No 148
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=67.01 E-value=1.3e+02 Score=30.81 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=83.7
Q ss_pred cccchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecC
Q 008423 6 CSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRG 84 (566)
Q Consensus 6 ~~~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrG 84 (566)
..++..+......+.|.|..... ......++++.+++ .|+++...+.+..+ +.+.+.+.++.+.++|+..|- | -
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--~~~~~~~~i~~ak~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~-l-~ 161 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--EADVSEQHIGAARK-LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVY-V-T 161 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--hHHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEE-E-c
Confidence 34566666676777777654221 12346677777775 79999888865444 788999999999999998654 4 3
Q ss_pred CCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 85 DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 85 Dpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
|..... .-....+|++.+|+..+. ..||+-+ |- +.. .-+..-.+=++|||+.|=|
T Consensus 162 DT~G~~--------~P~~v~~lv~~l~~~~~~-~~l~~H~----Hn---~~G---------lA~AN~laAi~aGa~~vd~ 216 (263)
T cd07943 162 DSAGAM--------LPDDVRERVRALREALDP-TPVGFHG----HN---NLG---------LAVANSLAAVEAGATRIDG 216 (263)
T ss_pred CCCCCc--------CHHHHHHHHHHHHHhCCC-ceEEEEe----cC---Ccc---------hHHHHHHHHHHhCCCEEEe
Confidence 432111 111378899999988875 3566543 31 111 2244444456799998866
Q ss_pred ccC
Q 008423 165 QLF 167 (566)
Q Consensus 165 Qlf 167 (566)
-+.
T Consensus 217 s~~ 219 (263)
T cd07943 217 SLA 219 (263)
T ss_pred ecc
Confidence 554
No 149
>PLN02535 glycolate oxidase
Probab=66.08 E-value=83 Score=34.37 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
..+++..++.|++|+++|++.|+ |+-|-|..+.
T Consensus 133 ~~dr~~~~~ll~RA~~aG~~alv-lTvD~p~~g~ 165 (364)
T PLN02535 133 YKRRDIAAQLVQRAEKNGYKAIV-LTADVPRLGR 165 (364)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-EeecCCCCCC
Confidence 35788888999999999988765 8899876654
No 150
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=65.96 E-value=1.4e+02 Score=31.26 Aligned_cols=157 Identities=24% Similarity=0.340 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcC--CCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCc
Q 008423 64 IDHALQTIKSNG--IQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASN 141 (566)
Q Consensus 64 L~~~L~~a~~~G--IrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~ 141 (566)
++..+.++++.+ .-=..+..|||. ++.+.+.++.+.+..-|-+.+| .|...|-++.+-
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~------------~e~s~e~i~~L~~~GaD~iELG---vPfSDPvADGP~----- 63 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPD------------LETSLEIIKTLVEAGADILELG---VPFSDPVADGPT----- 63 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCC------------HHHHHHHHHHHHhCCCCEEEec---CCCCCcCccCHH-----
Confidence 666677776544 223344567753 2346677666555444556774 566666655442
Q ss_pred cchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe-eec-ccCCHH--HHHHHhc---cCCCCCC
Q 008423 142 ESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP-GIM-PINNYK--GFLRMTG---FCKTKIP 214 (566)
Q Consensus 142 ~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp-GIm-PI~s~~--~~~r~~~---l~Gv~VP 214 (566)
-+..+++. +++| +..+...+.++.+|+.+.++||+. +.. ||-.+. .|.+.++ +.|+-||
T Consensus 64 ----Iq~A~~rA-L~~g---------~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp 129 (265)
T COG0159 64 ----IQAAHLRA-LAAG---------VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP 129 (265)
T ss_pred ----HHHHHHHH-HHCC---------CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 22222322 2445 456788899999999999999742 221 444433 4444443 3333444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCC-chHHHHHHHHHc
Q 008423 215 AEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLN-MEKSALAILLNL 272 (566)
Q Consensus 215 ~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN-~e~~v~~IL~~l 272 (566)
+=- .+.+.++++...++|++=+-|-+.+ -.+-+.+|.+..
T Consensus 130 DLP------------------~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 130 DLP------------------PEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred CCC------------------hHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 321 1223344455557788888888888 446677777766
No 151
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=65.01 E-value=1.9e+02 Score=30.40 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=81.1
Q ss_pred ccccchhhccCCCcCEEEecCCCC--------CCCchh----HHHHHHHHHhhcCCceeEEecccc-------CCHHHHH
Q 008423 5 TCSSGWTAWWPTTRHSATSRWGAG--------GSTADL----TLDIANRMQNTICVETMMHLTCTN-------MPVEKID 65 (566)
Q Consensus 5 ~~~~~~~~~~~~~p~fVsVTwgag--------G~~~~~----Sl~la~~lq~~~Gle~i~HLTCrd-------~n~~~L~ 65 (566)
....|.++.+....+.|.+-.... +.+... ..++++.+++ .|+.+...++|.- .+.+.+.
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~-~g~~v~~~i~~~~~~~~~~~~~~~~~~ 158 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ-AGVRVRGYVSCVLGCPYEGEVPPEAVA 158 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEEEEecCCCCCCCCHHHHH
Confidence 355667777777777665554321 222323 3345555554 6998877666522 2678888
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchH
Q 008423 66 HALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQ 145 (566)
Q Consensus 66 ~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~ 145 (566)
+....+.++|++.|- | -|.... ..-....+||+.+|+.+++ ..|++-+ |- +.-
T Consensus 159 ~~~~~~~~~G~d~i~-l-~DT~G~--------~~P~~v~~lv~~l~~~~~~-~~i~~H~----Hn---~~G--------- 211 (287)
T PRK05692 159 DVAERLFALGCYEIS-L-GDTIGV--------GTPGQVRAVLEAVLAEFPA-ERLAGHF----HD---TYG--------- 211 (287)
T ss_pred HHHHHHHHcCCcEEE-e-ccccCc--------cCHHHHHHHHHHHHHhCCC-CeEEEEe----cC---CCC---------
Confidence 888999999998654 3 222111 1111378899999988764 4565543 31 111
Q ss_pred HHHHHHHHHHHcCCcEEEeccC
Q 008423 146 SDLLYLKKKVDAGADLIITQLF 167 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlf 167 (566)
.-+.....=++|||+.|=|-+.
T Consensus 212 la~AN~laA~~aG~~~id~s~~ 233 (287)
T PRK05692 212 QALANIYASLEEGITVFDASVG 233 (287)
T ss_pred cHHHHHHHHHHhCCCEEEEEcc
Confidence 2355555667899999866554
No 152
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=64.98 E-value=54 Score=31.53 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.+...+.++.+.+. ++.|=+ |=+- ....+.+.|+.+|+.+++ +.|.+...-.. ..
T Consensus 11 ~~~~~~~~~~~l~~~-i~~iei--g~~~-----------~~~~g~~~i~~i~~~~~~-~~i~~~~~v~~------~~--- 66 (202)
T cd04726 11 DLEEALELAKKVPDG-VDIIEA--GTPL-----------IKSEGMEAVRALREAFPD-KIIVADLKTAD------AG--- 66 (202)
T ss_pred CHHHHHHHHHHhhhc-CCEEEc--CCHH-----------HHHhCHHHHHHHHHHCCC-CEEEEEEEecc------cc---
Confidence 667777777777776 666432 2111 011247888999887543 56655433221 10
Q ss_pred CccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHH
Q 008423 140 SNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r 204 (566)
. ..+++=.++|||++++-..-..+...++++.|++.| ++++.-++...|.....+
T Consensus 67 ------~--~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 67 ------A--LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred ------H--HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHH
Confidence 1 112333579999999877666667788999999988 344433344555555544
No 153
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=64.67 E-value=1.2e+02 Score=32.67 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=25.5
Q ss_pred HcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 156 DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 156 dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
++++|.++.-.... ....|++++++.|+++|++.
T Consensus 186 ~~~pD~V~~~~~g~--~~~~~~kq~~~~G~~~~~~~ 219 (374)
T TIGR03669 186 KADPDFVMSMLVGA--NHASFYEQAASANLNLPMGT 219 (374)
T ss_pred HcCCCEEEEcCcCC--cHHHHHHHHHHcCCCCcccc
Confidence 46899999644443 34578999999999998763
No 154
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=64.62 E-value=20 Score=37.18 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEE----EecCCCCCCCC-Cccc--cCC------C
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVL----ALRGDPPHGQD-KFVQ--IQG------G 99 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNIL----aLrGDpp~~~~-~~~~--~~~------~ 99 (566)
....+++..++....+++..-|+. +.+.......+..+.+.|+.-|. ...++...... .... ..+ .
T Consensus 148 ~~~~~i~~~v~~~~~~Pv~vKL~p-~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i 226 (295)
T PF01180_consen 148 ELVAEIVRAVREAVDIPVFVKLSP-NFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAI 226 (295)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEE-S-TSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGG
T ss_pred HHHHHHHHHHHhccCCCEEEEecC-CCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhh
Confidence 345567777777779999999999 45544444555555588988887 44444111100 0000 112 2
Q ss_pred cccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE--Eecc-CCCHHHHHHH
Q 008423 100 FACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI--ITQL-FYDTDMFLKF 176 (566)
Q Consensus 100 F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQl-ffD~d~f~~f 176 (566)
+..|+..|+.+++..+..+.|-..| |- ..-+...+.+.|||+.+ -|-+ +.+++.+.+.
T Consensus 227 ~p~aL~~V~~~~~~~~~~i~Iig~G---GI----------------~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i 287 (295)
T PF01180_consen 227 RPIALRWVRELRKALGQDIPIIGVG---GI----------------HSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRI 287 (295)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEES---S------------------SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHH
T ss_pred hhHHHHHHHHHHhccccceEEEEeC---Cc----------------CCHHHHHHHHHhCCCHheechhhhhcCcHHHHHH
Confidence 3468999999999887555554333 11 12344577889999975 5666 3388888887
Q ss_pred HHHHHH
Q 008423 177 VNDCRQ 182 (566)
Q Consensus 177 ~~~~R~ 182 (566)
.+.+++
T Consensus 288 ~~~L~~ 293 (295)
T PF01180_consen 288 NRELEE 293 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777664
No 155
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=64.58 E-value=43 Score=41.29 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=80.1
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC-C-CCCCccchHHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP-D-GVASNESYQSDLLY 150 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~-~-~~~~~~~~~~dl~~ 150 (566)
.+.+.||+|.+-+-+.|. ...|+| ++.+++.+|+ .| +-.|.+-.+|+...-..+. | -|..+... +.+..
T Consensus 552 ~~~kkvlilG~G~~~ig~-----~~efdy~~v~~i~alk~-~G-~~vi~v~~npetvs~~~~~aD~~y~e~~~~-e~v~~ 623 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQ-----GIEFDYCCVHAVLALRE-AG-YETIMVNCNPETVSTDYDTSDRLYFEPLTL-EDVLE 623 (1066)
T ss_pred CCCceEEEECcccccccc-----ccccchhHHHHHHHHHH-CC-CEEEEEeCCccccccccchhhheeecCCCH-HHHHH
Confidence 356889988877765442 346888 7899999986 45 4688888899763110000 0 00111122 23444
Q ss_pred HHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe----eecccCCHHHHHHHhccCCCCCCHHH
Q 008423 151 LKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP----GIMPINNYKGFLRMTGFCKTKIPAEI 217 (566)
Q Consensus 151 Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp----GImPI~s~~~~~r~~~l~Gv~VP~~i 217 (566)
+.+| -+.|.+|+|+.-+.. ....+.+.+.| +|++. .+--+.+...++++.+-.|+.+|...
T Consensus 624 i~~~--e~~dgVi~~~g~~~~--~~la~~le~~G--i~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~ 688 (1066)
T PRK05294 624 IIEK--EKPKGVIVQFGGQTP--LKLAKALEAAG--VPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNG 688 (1066)
T ss_pred HHHH--cCCCEEEEEeCchhH--HHHHHHHHHCC--CceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeE
Confidence 4444 478999999775554 46778888887 44431 12223455566777778899999764
No 156
>PRK05660 HemN family oxidoreductase; Provisional
Probab=64.35 E-value=1e+02 Score=33.34 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=60.2
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
.+++.|.+-.|.|.--. -..-.+|++.|++.++. ...|.+-++|+.- +.+.|
T Consensus 57 ~~v~ti~~GGGtPs~l~---------~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l-----------------~~e~l 110 (378)
T PRK05660 57 REVHSIFIGGGTPSLFS---------AEAIQRLLDGVRARLPFAPDAEITMEANPGTV-----------------EADRF 110 (378)
T ss_pred CceeEEEeCCCccccCC---------HHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcC-----------------CHHHH
Confidence 56888887777775321 11245677778876642 2367777777542 12334
Q ss_pred HHHHHcCCcEE-Ee-cc-----------CCCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHH
Q 008423 152 KKKVDAGADLI-IT-QL-----------FYDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFL 203 (566)
Q Consensus 152 k~KvdAGAdFi-IT-Ql-----------ffD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~ 203 (566)
+.=.++|.+-| |. |= .++.+...+-++.++++|+. +-++.|+ |-+|...+.
T Consensus 111 ~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Gl-pgqt~~~~~ 177 (378)
T PRK05660 111 VGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGL-PDQSLEEAL 177 (378)
T ss_pred HHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC-CCCCHHHHH
Confidence 44445787633 11 11 24566677778888888873 3456665 556666554
No 157
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.67 E-value=1.8e+02 Score=30.90 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc----------ccCCCcccH
Q 008423 34 LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFV----------QIQGGFACA 103 (566)
Q Consensus 34 ~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~----------~~~~~F~~A 103 (566)
...++.+.+++...++++.-++- +...+.+....+.+.|++-|.+...-+....+ +. ........+
T Consensus 152 ~~~eil~~v~~~~~iPV~vKl~p---~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d-~~~~~~~~~~glsg~~~~~~a 227 (334)
T PRK07565 152 RYLDILRAVKSAVSIPVAVKLSP---YFSNLANMAKRLDAAGADGLVLFNRFYQPDID-LETLEVVPGLVLSTPAELRLP 227 (334)
T ss_pred HHHHHHHHHHhccCCcEEEEeCC---CchhHHHHHHHHHHcCCCeEEEECCcCCCCcC-hhhcccccCCCCCCchhhhHH
Confidence 45677888887778999988875 22356677777889999998765432211111 10 011123346
Q ss_pred HHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCC-HHHHHHHHHHH
Q 008423 104 LDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYD-TDMFLKFVNDC 180 (566)
Q Consensus 104 ~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD-~d~f~~f~~~~ 180 (566)
.+.|+.+++..+ ---||+.|.-.+ .| ..+.+.+||+. +-|.++++ ++.+.++.+.+
T Consensus 228 l~~v~~~~~~~~-ipIig~GGI~s~-----------------~D---a~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 228 LRWIAILSGRVG-ADLAATTGVHDA-----------------ED---VIKMLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred HHHHHHHHhhcC-CCEEEECCCCCH-----------------HH---HHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 677777776553 224555443221 22 34455699985 56888885 77766666655
Q ss_pred H
Q 008423 181 R 181 (566)
Q Consensus 181 R 181 (566)
+
T Consensus 287 ~ 287 (334)
T PRK07565 287 E 287 (334)
T ss_pred H
Confidence 4
No 158
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=62.86 E-value=78 Score=36.21 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=79.1
Q ss_pred HHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcC--CCEE--EEecCCCCCCCCCccccCCCcccHHHHHHHHHHH-
Q 008423 41 RMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNG--IQNV--LALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA- 113 (566)
Q Consensus 41 ~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~G--IrNI--LaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~- 113 (566)
.-|+++|-||..--.-+++ +-.++.+.|.+++.+| ++.| +++.|++..-.. ++=..+|+.+.+.
T Consensus 95 ~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~---------~y~~~fl~~~~~a~ 165 (522)
T TIGR01211 95 SPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDL---------DYQEWFIKRCLNAM 165 (522)
T ss_pred CCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCH---------HHHHHHHHHHHHHh
Confidence 3455667776554443443 4578888899999888 5556 788888764321 1122223322222
Q ss_pred ---------------------cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE--Eecc----
Q 008423 114 ---------------------YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI--ITQL---- 166 (566)
Q Consensus 114 ---------------------~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQl---- 166 (566)
++..-+||+.. |.+|+.-+. +.++.|+ ++|.+-+ =-|=
T Consensus 166 ~~~~~~~~~~~~~~~~~~~ne~a~~~~vgiti--EtRPD~i~~----------e~L~~L~---~~G~~rVslGVQS~~d~ 230 (522)
T TIGR01211 166 NGFDQELKGNSTLEEAIRINETSKHRCVGLTI--ETRPDYCRE----------EHIDRML---KLGATRVELGVQTIYND 230 (522)
T ss_pred ccccccccccchHHHHHHhhhcccCCeEEEEE--EEcCCcCCH----------HHHHHHH---HcCCCEEEEECccCCHH
Confidence 22223566555 555554332 3455444 5787643 2233
Q ss_pred -------CCCHHHHHHHHHHHHHcCCC--CcEEeeecccCCHHHHHH
Q 008423 167 -------FYDTDMFLKFVNDCRQIGIT--CPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 167 -------ffD~d~f~~f~~~~R~~Gi~--vPIIpGImPI~s~~~~~r 204 (566)
.++.+.+.+-++.+|++|+. +-+|+|+ |=++..++..
T Consensus 231 VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GL-Pgqt~e~~~~ 276 (522)
T TIGR01211 231 ILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGL-PGSSFERDLE 276 (522)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCC-CCCCHHHHHH
Confidence 35567777888899999975 3457777 4566665543
No 159
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=62.65 E-value=2.1e+02 Score=30.33 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII 190 (566)
..+.+|+ ++|+|.|+...+. ..+..|++.+++.|++.|++
T Consensus 207 ~~v~~l~---~~~~d~v~~~~~~--~~~~~~~k~~~~~G~~~~~i 246 (369)
T PRK15404 207 ALIAKLK---KENVDFVYYGGYH--PEMGQILRQAREAGLKTQFM 246 (369)
T ss_pred HHHHHHH---hcCCCEEEECCCc--hHHHHHHHHHHHCCCCCeEE
Confidence 4556555 4799998864333 34567999999999998876
No 160
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=62.52 E-value=1.8e+02 Score=29.43 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeE-EEEecCCCCCCCCCCCCCCC
Q 008423 62 EKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGI-TVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 62 ~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~I-GVAgyPEgHpe~~~~~~~~~ 140 (566)
......+..+.+.|.++|.++.++...+ . .....+.+.++ ..| +++ ....|+.+. .+
T Consensus 119 ~~~~~~~~~l~~~g~~~vail~~~~~~~-------~---~~~~~~~~~~~-~~G--~~v~~~~~~~~~~---~d------ 176 (312)
T cd06333 119 LMAEAILADMKKRGVKTVAFIGFSDAYG-------E---SGLKELKALAP-KYG--IEVVADERYGRTD---TS------ 176 (312)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCcHHH-------H---HHHHHHHHHHH-HcC--CEEEEEEeeCCCC---cC------
Confidence 3444455566788999999997643210 0 00111222232 344 233 233454321 11
Q ss_pred ccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEee
Q 008423 141 NESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 141 ~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
....+.+++ ++++|.|+.-... .+ ...+++.+++.|+++||+.+
T Consensus 177 ---~~~~~~~l~---~~~pdaIi~~~~~-~~-~~~~~~~l~~~g~~~p~~~~ 220 (312)
T cd06333 177 ---VTAQLLKIR---AARPDAVLIWGSG-TP-AALPAKNLRERGYKGPIYQT 220 (312)
T ss_pred ---HHHHHHHHH---hCCCCEEEEecCC-cH-HHHHHHHHHHcCCCCCEEee
Confidence 113333332 4689998876432 22 34588999999999998744
No 161
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.49 E-value=95 Score=32.05 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=71.1
Q ss_pred CcCEEEecCCCCCCCchhHH-HHHHHHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCc
Q 008423 17 TRHSATSRWGAGGSTADLTL-DIANRMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF 93 (566)
Q Consensus 17 ~p~fVsVTwgagG~~~~~Sl-~la~~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~ 93 (566)
..||+=..||...-.....+ +....++ ++|+.+.+-=|.-.. .+..+++.|+.++++|++.|=+=.|--.-+
T Consensus 24 yID~lKfg~Gt~~l~~~~~l~eki~la~-~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~---- 98 (237)
T TIGR03849 24 YITFVKFGWGTSALIDRDIVKEKIEMYK-DYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEIS---- 98 (237)
T ss_pred heeeEEecCceEeeccHHHHHHHHHHHH-HcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCC----
Confidence 34666666654443332223 3334444 478888765333222 557899999999999999987655543321
Q ss_pred cccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc
Q 008423 94 VQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL 166 (566)
Q Consensus 94 ~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl 166 (566)
.+.=..||+.+++ .| |. ..||-.......+ ...++..-++.+++=++|||+.+|.--
T Consensus 99 ------~~~~~rlI~~~~~-~g--~~----v~~EvG~K~~~~~---~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 99 ------LEERCNLIERAKD-NG--FM----VLSEVGKKSPEKD---SELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred ------HHHHHHHHHHHHh-CC--Ce----EeccccccCCccc---ccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 1112345555543 22 11 2233322111110 123445667788888999999998743
No 162
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=62.36 E-value=1.8e+02 Score=29.57 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=82.3
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
.+.+..++.|++-.-+ . ....++...+++ .|+.+-.=|.+ +.+.+.+...|. -++-||+++-+|--+|.
T Consensus 80 ~~~~~gad~I~~H~Ea--~--~~~~~~l~~Ir~-~g~k~GlalnP-~T~~~~i~~~l~-----~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 80 DFADAGATTISFHPEA--S--RHVHRTIQLIKS-HGCQAGLVLNP-ATPVDILDWVLP-----ELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred HHHHhCCCEEEEcccC--c--ccHHHHHHHHHH-CCCceeEEeCC-CCCHHHHHHHHh-----hcCEEEEEEECCCCCCc
Confidence 4455567776665543 2 224566677775 68888777776 346666666654 57789999998865543
Q ss_pred CccccCCCcc-cHHHHHHHHHHH---cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-ecc
Q 008423 92 KFVQIQGGFA-CALDLVKHIRSA---YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-TQL 166 (566)
Q Consensus 92 ~~~~~~~~F~-~A~dLVk~Ir~~---~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQl 166 (566)
.|. .+.+=|+.+|+. .+..+.|.|.|-= ..+.+++=.+||||.+| -=.
T Consensus 149 -------~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI--------------------~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 149 -------AFIPSALDKLRAIRKKIDALGKPIRLEIDGGV--------------------KADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred -------cccHHHHHHHHHHHHHHHhcCCCeeEEEECCC--------------------CHHHHHHHHHcCCCEEEEChh
Confidence 344 356666665553 3434778888711 13455666689999765 233
Q ss_pred CCCHHHHHHHHHHHHH
Q 008423 167 FYDTDMFLKFVNDCRQ 182 (566)
Q Consensus 167 ffD~d~f~~f~~~~R~ 182 (566)
+|..+...+-++.+|+
T Consensus 202 iF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 202 IFNAPDYAQVIAQMRA 217 (223)
T ss_pred hhCCCCHHHHHHHHHH
Confidence 5544446666666665
No 163
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.17 E-value=41 Score=38.18 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE
Q 008423 65 DHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV 122 (566)
Q Consensus 65 ~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV 122 (566)
.+.+..+.++|++-|.+ |...+ -=....+.|+.||+.++....|++
T Consensus 244 ~~ra~~Lv~aGvd~i~v---d~a~g---------~~~~~~~~i~~ir~~~~~~~~V~a 289 (502)
T PRK07107 244 AERVPALVEAGADVLCI---DSSEG---------YSEWQKRTLDWIREKYGDSVKVGA 289 (502)
T ss_pred HHHHHHHHHhCCCeEee---cCccc---------ccHHHHHHHHHHHHhCCCCceEEe
Confidence 34455566778877663 12211 111358889999998875455654
No 164
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=62.12 E-value=1.9e+02 Score=29.58 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=81.2
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCC--ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICV--ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gl--e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
..+.+..++.|++-.-+- ....++...+++ .|+ .+=.=|.+ +.+.+.+...|. -++-||+++-+|--
T Consensus 85 ~~~~~aGad~It~H~Ea~----~~~~~~l~~Ik~-~g~~~kaGlalnP-~Tp~~~i~~~l~-----~vD~VLiMtV~PGf 153 (228)
T PRK08091 85 KACVAAGADIVTLQVEQT----HDLALTIEWLAK-QKTTVLIGLCLCP-ETPISLLEPYLD-----QIDLIQILTLDPRT 153 (228)
T ss_pred HHHHHhCCCEEEEcccCc----ccHHHHHHHHHH-CCCCceEEEEECC-CCCHHHHHHHHh-----hcCEEEEEEECCCC
Confidence 345566778876665432 235567777885 687 44444443 335667766665 38889999999866
Q ss_pred CCCCccccCCCcc-cHHHHHHHHHH---HcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-
Q 008423 89 GQDKFVQIQGGFA-CALDLVKHIRS---AYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII- 163 (566)
Q Consensus 89 ~~~~~~~~~~~F~-~A~dLVk~Ir~---~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI- 163 (566)
+|. .|. .+.+=|+.+|+ +.+..+.|.|=|-= ..+.+++=.+||||.+|
T Consensus 154 gGQ-------~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI--------------------~~~ti~~l~~aGaD~~V~ 206 (228)
T PRK08091 154 GTK-------APSDLILDRVIQVENRLGNRRVEKLISIDGSM--------------------TLELASYLKQHQIDWVVS 206 (228)
T ss_pred CCc-------cccHHHHHHHHHHHHHHHhcCCCceEEEECCC--------------------CHHHHHHHHHCCCCEEEE
Confidence 543 344 36666665554 33434667776511 13445666789999654
Q ss_pred eccCCCHHHHHHHHHHHHH
Q 008423 164 TQLFYDTDMFLKFVNDCRQ 182 (566)
Q Consensus 164 TQlffD~d~f~~f~~~~R~ 182 (566)
--.+|..+.+.+.++.++.
T Consensus 207 GSalF~~~d~~~~i~~l~~ 225 (228)
T PRK08091 207 GSALFSQGELKTTLKEWKS 225 (228)
T ss_pred ChhhhCCCCHHHHHHHHHH
Confidence 4556654446666666654
No 165
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=61.72 E-value=65 Score=39.89 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCCCC---CCCCCCCCccchHHHHHH
Q 008423 75 GIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHPDT---IGPDGVASNESYQSDLLY 150 (566)
Q Consensus 75 GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~---~~~~~~~~~~~~~~dl~~ 150 (566)
+-+.||+|.+-|-+.+. ...|+| ++.+++.+++ .| +-.|.+-.+|+..... .+. -+..+... +++..
T Consensus 554 ~~kkvLIlG~G~~rig~-----~~efdy~~v~~~~aLk~-~G-~~vI~vn~npetvs~~~~~aD~-~y~ep~~~-e~vl~ 624 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQ-----GIEFDYSSVHAAFALKK-EG-YETIMINNNPETVSTDYDTADR-LYFEPLTL-EDVLN 624 (1068)
T ss_pred CCceEEEeccccccccc-----ccccchhHHHHHHHHHH-cC-CEEEEEeCCccccccccccCce-EEEccCCH-HHHHH
Confidence 56889999887765442 356998 8899999986 45 4588899999864211 110 00011122 23333
Q ss_pred HHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEee-----ecccCCHHHHHHHhccCCCCCCHHH
Q 008423 151 LKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPG-----IMPINNYKGFLRMTGFCKTKIPAEI 217 (566)
Q Consensus 151 Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpG-----ImPI~s~~~~~r~~~l~Gv~VP~~i 217 (566)
+.++ -+.|.+|+|+- ........+.+.+.| +||+ | +--+.+...|.++.+-.|+.+|...
T Consensus 625 I~~~--e~~dgVI~~~g--~~~~~~la~~le~~G--i~il-G~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~ 689 (1068)
T PRK12815 625 VAEA--ENIKGVIVQFG--GQTAINLAKGLEEAG--LTIL-GTSPDTIDRLEDRDRFYQLLDELGLPHVPGL 689 (1068)
T ss_pred HHhh--cCCCEEEEecC--cHHHHHHHHHHHHCC--CeEE-CCcHHHHHHHcCHHHHHHHHHHcCcCCCCeE
Confidence 4333 37899999843 345566777788777 4442 3 1223444566666777889888754
No 166
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=61.64 E-value=1.8e+02 Score=31.25 Aligned_cols=100 Identities=14% Similarity=0.200 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHc---CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEEEecCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSN---GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 61 ~~~L~~~L~~a~~~---GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGVAgyPEgHpe~~~~ 135 (566)
.+.|.+.+..+... +|+.|. ++|+-|.. -.-+.-.+|++.|++.++. ...|.+-++|..- +.
T Consensus 34 ~~~l~~Ei~~~~~~~~~~i~~i~-~gGGtpt~--------l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l----~~ 100 (377)
T PRK08599 34 LDALIKEMNTYAIRPFDKLKTIY-IGGGTPTA--------LSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDL----TK 100 (377)
T ss_pred HHHHHHHHHHhhhcCCCceeEEE-eCCCCccc--------CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC----CH
Confidence 34566666555555 455554 44443321 1123467788888876542 1356666777532 11
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEE-Ee------------ccCCCHHHHHHHHHHHHHcCCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLI-IT------------QLFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFi-IT------------QlffD~d~f~~f~~~~R~~Gi~ 186 (566)
+.++.|+ ++|.+.+ |- .-.++.+.+.+-++.+++.|+.
T Consensus 101 ----------e~l~~l~---~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 101 ----------EKLQVLK---DSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred ----------HHHHHHH---HcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 2333333 4687643 11 1135666777788888888853
No 167
>PLN02389 biotin synthase
Probab=61.47 E-value=2.5e+02 Score=30.74 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
++.++|.+....+++.|++.|+.+++-....+ .+..|++..++++.|++ .+. .|.+ -.|.. +
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~-----e~~~~e~i~eiir~ik~-~~l--~i~~---s~G~l---~---- 177 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVG-----RKTNFNQILEYVKEIRG-MGM--EVCC---TLGML---E---- 177 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCC-----ChhHHHHHHHHHHHHhc-CCc--EEEE---CCCCC---C----
Confidence 47788888888888999999887643211111 12357889999999984 442 2321 11211 1
Q ss_pred CCccchHHHHHHHHHHHHcCCc-----EEEeccC-------CCHHHHHHHHHHHHHcCCCC--cEEeee
Q 008423 139 ASNESYQSDLLYLKKKVDAGAD-----LIITQLF-------YDTDMFLKFVNDCRQIGITC--PIVPGI 193 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAd-----FiITQlf-------fD~d~f~~f~~~~R~~Gi~v--PIIpGI 193 (566)
++.+++|| +||+| +=-+.=+ -+.+..++.++.+++.|+.+ =+|.|+
T Consensus 178 ------~E~l~~Lk---eAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 ------KEQAAQLK---EAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred ------HHHHHHHH---HcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 14555555 57876 1111112 24555666677777778643 345564
No 168
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.39 E-value=49 Score=34.07 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCcc
Q 008423 63 KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNE 142 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~ 142 (566)
.......-+.+.|.+++.++..|....+. .....+.+.++ .+|-.+ .+...|+.+ ..+
T Consensus 119 ~~~~~~~~l~~~g~~~~~~i~~~~~~~g~---------~~~~~~~~~~~-~~G~~v-~~~~~~~~~---~~d-------- 176 (341)
T cd06341 119 SLTTWGDFAKDQGGTRAVALVTALSAAVS---------AAAALLARSLA-AAGVSV-AGIVVITAT---APD-------- 176 (341)
T ss_pred hhHHHHHHHHHcCCcEEEEEEeCCcHHHH---------HHHHHHHHHHH-HcCCcc-ccccccCCC---CCC--------
Confidence 44455555677899999988655321100 01122223333 344221 222233322 122
Q ss_pred chHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 143 SYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 143 ~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
....+.++++ .++|.|+.. .+......+++.+++.|++.|++.++...
T Consensus 177 -~~~~~~~i~~---~~pdaV~~~--~~~~~a~~~~~~~~~~G~~~~~~~~~~~~ 224 (341)
T cd06341 177 -PTPQAQQAAA---AGADAIITV--LDAAVCASVLKAVRAAGLTPKVVLSGTCY 224 (341)
T ss_pred -HHHHHHHHHh---cCCCEEEEe--cChHHHHHHHHHHHHcCCCCCEEEecCCC
Confidence 2245555543 589999864 46667789999999999999988776544
No 169
>PLN02411 12-oxophytodienoate reductase
Probab=61.39 E-value=1.2e+02 Score=33.19 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=47.8
Q ss_pred ccccCCHHHHHHHHH-------HHHHcCCCEEEEecCCC--------C---CCCCCcc-ccCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQ-------TIKSNGIQNVLALRGDP--------P---HGQDKFV-QIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~-------~a~~~GIrNILaLrGDp--------p---~~~~~~~-~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+++-|++++|++.++ .|+++|.+-|=+=.+-- | +-.|+|- ..++......++|+.||+..|
T Consensus 151 ~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg 230 (391)
T PLN02411 151 KPRALETSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIG 230 (391)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 457889888877655 45689999987554431 1 1111121 012234457899999999998
Q ss_pred CceeEEEEecCCC
Q 008423 116 DYFGITVAGYPEG 128 (566)
Q Consensus 116 d~F~IGVAgyPEg 128 (566)
++| ||+=-.|+.
T Consensus 231 ~d~-vgvRiS~~~ 242 (391)
T PLN02411 231 ADR-VGVRVSPAI 242 (391)
T ss_pred CCe-EEEEEcccc
Confidence 776 999998853
No 170
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=61.16 E-value=1.7e+02 Score=28.80 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=80.1
Q ss_pred HHHHHHHHhhcCCceeEEeccccC-C--H--HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHH
Q 008423 36 LDIANRMQNTICVETMMHLTCTNM-P--V--EKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHI 110 (566)
Q Consensus 36 l~la~~lq~~~Gle~i~HLTCrd~-n--~--~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~I 110 (566)
.+....+++...++.+-. ++.+. | - ....+.+..+.++|++-|+......+.. .+ ....++++.+
T Consensus 45 ~~~i~~i~~~~~~Pil~~-~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-------~~--~~~~~~i~~~ 114 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGI-IKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-------DG--ETLAELVKRI 114 (221)
T ss_pred HHHHHHHHHhCCCCEEEE-EecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-------CC--CCHHHHHHHH
Confidence 566666666566665422 33331 1 1 1123457888999999555433221110 00 2467888888
Q ss_pred HHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccC-C------CHHHHHHHHHHHHHc
Q 008423 111 RSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLF-Y------DTDMFLKFVNDCRQI 183 (566)
Q Consensus 111 r~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf-f------D~d~f~~f~~~~R~~ 183 (566)
++. . .+.+.+ +.| + .+.+++-.++|+|++.+... + .......+++++++.
T Consensus 115 ~~~-~-~i~vi~----~v~----t-------------~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~ 171 (221)
T PRK01130 115 KEY-P-GQLLMA----DCS----T-------------LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA 171 (221)
T ss_pred HhC-C-CCeEEE----eCC----C-------------HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh
Confidence 864 2 234433 222 1 22346677899999976321 1 111124566667664
Q ss_pred CCCCcEEeeecccCCHHHHHHHhcc--CCCCCCHHHH
Q 008423 184 GITCPIVPGIMPINNYKGFLRMTGF--CKTKIPAEIT 218 (566)
Q Consensus 184 Gi~vPIIpGImPI~s~~~~~r~~~l--~Gv~VP~~il 218 (566)
+++||+++ -.|.+...+.++.+. .|+-+-..+.
T Consensus 172 -~~iPvia~-GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 172 -VGCPVIAE-GRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred -CCCCEEEE-CCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 36898864 367777777766442 4555555543
No 171
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.47 E-value=2.2e+02 Score=29.65 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeee
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGI 193 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGI 193 (566)
..+.+|+ ++++|.|+-.. .......|++.+++.|.+.+++.+.
T Consensus 190 ~~i~~l~---~~~~d~v~~~~--~~~~~~~~~~~~~~~G~~~~~~~~~ 232 (347)
T cd06340 190 SEVLKLK---AANPDAILPAS--YTNDAILLVRTMKEQRVEPKAVYSV 232 (347)
T ss_pred HHHHHHH---hcCCCEEEEcc--cchhHHHHHHHHHHcCCCCcEEEec
Confidence 4455553 36899988654 3344567999999999987776543
No 172
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.39 E-value=1.5e+02 Score=31.32 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=121.7
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
++...+++ +--.++-++|. |.+.+...+++|.+.+--=||.+.-.. . .-.++.....+++.+.+++
T Consensus 8 ~ll~~A~~--~~yaV~AfN~~--n~e~~~avi~AAe~~~sPvIl~~~~~~---~-----~~~g~~~~~~~~~~~A~~~-- 73 (283)
T PRK07998 8 ILLDRIQE--KHVLAGAFNTT--NLETTISILNAIERSGLPNFIQIAPTN---A-----QLSGYDYIYEIVKRHADKM-- 73 (283)
T ss_pred HHHHHHHH--CCCEEEEEeeC--CHHHHHHHHHHHHHhCCCEEEECcHhH---H-----hhCCHHHHHHHHHHHHHHC--
Confidence 44455554 33567788887 677888999999999988788652111 0 1123444555555555544
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE---eccCC--CHHHHHHHHHHHHHcCCCCcEEe
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII---TQLFY--DTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI---TQlff--D~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
.|-|+-+=. |. .+++..++-+++|.+-++ +++=| +.+...+.++.|+..|+.+-.=.
T Consensus 74 --~vPV~lHLD-H~---------------~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaEl 135 (283)
T PRK07998 74 --DVPVSLHLD-HG---------------KTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAEL 135 (283)
T ss_pred --CCCEEEECc-CC---------------CCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 344554332 31 246777888999998766 56666 67777889999999996554445
Q ss_pred eecc------------cCCHHHHHHHhccCCC-----CC---------CHHHHHHhCCCCC--CHHHHHHHHHHHHHHHH
Q 008423 192 GIMP------------INNYKGFLRMTGFCKT-----KI---------PAEITAALEPIKD--NEEAVKAYGIHLGAEMC 243 (566)
Q Consensus 192 GImP------------I~s~~~~~r~~~l~Gv-----~V---------P~~il~~Le~~kd--dde~vk~~Gv~la~e~i 243 (566)
|.+. .++.....+|.+-+|+ .+ |.-=.++|+.+.+ +-.-|..=|-.+-.+.+
T Consensus 136 G~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~ 215 (283)
T PRK07998 136 GAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEIL 215 (283)
T ss_pred ccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHH
Confidence 5442 4666777788775553 33 4311233332210 00000000001223677
Q ss_pred HHHHHcCCCeEEEEcCCchHHHHHHHHHc
Q 008423 244 KKILAHGIKTLHLYTLNMEKSALAILLNL 272 (566)
Q Consensus 244 ~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l 272 (566)
++..+.|+.++.++|--+......+-+.+
T Consensus 216 ~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l 244 (283)
T PRK07998 216 RSFVNYKVAKVNIASDLRKAFITTVGKAY 244 (283)
T ss_pred HHHHHcCCcEEEECHHHHHHHHHHHHHHH
Confidence 88899999999999976666555555544
No 173
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=60.33 E-value=1.4e+02 Score=32.04 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHH
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRS 112 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~ 112 (566)
.++.+.+.+.+..+.+.|+..|..-+|+|--. . .-.++++++++
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~--------~---~~~~il~~~~~ 88 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSGGEPLLR--------K---DLEELVAHARE 88 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECCccCCc--------h---hHHHHHHHHHH
Confidence 46788899999999999999988777777431 1 24578888875
No 174
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=60.12 E-value=1.9e+02 Score=30.02 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=74.5
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEecc---ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTC---TNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTC---rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
+..+...+.|.|-... +.-+...+.+..+++ .|++++.++.+ ...+.+.+.+..+.+.++|++.|-+- |...
T Consensus 99 ~~~~~g~~~iri~~~~--~~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--DT~G 173 (275)
T cd07937 99 KAAKNGIDIFRIFDAL--NDVRNLEVAIKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK--DMAG 173 (275)
T ss_pred HHHHcCCCEEEEeecC--ChHHHHHHHHHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCC
Confidence 3444455666664311 113445666677765 79998888865 33467888888888999998876532 4321
Q ss_pred CCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEec
Q 008423 89 GQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQ 165 (566)
Q Consensus 89 ~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQ 165 (566)
.. .-....+||+.+|+..+ ..|++-++-. .. .-+.....=+++||+.|=+=
T Consensus 174 ~~--------~P~~v~~lv~~l~~~~~--~~l~~H~Hnd-------~G---------lA~aN~laA~~aGa~~vd~s 224 (275)
T cd07937 174 LL--------TPYAAYELVKALKKEVG--LPIHLHTHDT-------SG---------LAVATYLAAAEAGVDIVDTA 224 (275)
T ss_pred CC--------CHHHHHHHHHHHHHhCC--CeEEEEecCC-------CC---------hHHHHHHHHHHhCCCEEEEe
Confidence 11 11137888999998776 4666644321 11 23444555567899987553
No 175
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=60.10 E-value=1.6e+02 Score=31.47 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHH-cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC-CceeEEEE---ecCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKS-NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG-DYFGITVA---GYPEGHPDTIGP 135 (566)
Q Consensus 61 ~~~L~~~L~~a~~-~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g-d~F~IGVA---gyPEgHpe~~~~ 135 (566)
.+++++.+....+ .||++|+..+|||-...+ ..-.+|++.+++.-. ..+.||.- ..|..- +
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---------~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~ri----t- 209 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKD---------HELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRI----T- 209 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCH---------HHHHHHHHHHHhcCCccEEEeecCCCccCchhc----C-
Confidence 5677887777754 589999999999853211 014466777765311 11333321 123221 1
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCc-EEEeccCCCH---HHHHHHHHHHHHcCCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGAD-LIITQLFYDT---DMFLKFVNDCRQIGIT 186 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAd-FiITQlffD~---d~f~~f~~~~R~~Gi~ 186 (566)
.++..+.++ +|-. .++|+.--.. +.+.+=++.++++|+.
T Consensus 210 ----------~el~~~L~~--~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~ 252 (331)
T TIGR00238 210 ----------DELCELLAS--FELQLMLVTHINHCNEITEEFAEAMKKLRTVNVT 252 (331)
T ss_pred ----------HHHHHHHHh--cCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCE
Confidence 233333332 3644 4677776653 4555666777888864
No 176
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=59.85 E-value=58 Score=40.19 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCCCCCC-CC-CCCCccchHHHHHHH
Q 008423 75 GIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIG-PD-GVASNESYQSDLLYL 151 (566)
Q Consensus 75 GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~-~~-~~~~~~~~~~dl~~L 151 (566)
.-+.||+|++-+.+.|. ...|+| ++.+++.+++ .| +-.|.|-.+|+.....-+ .+ -+..+... +.+..+
T Consensus 553 ~~~kvlvlG~G~~rig~-----~~efd~~~v~~i~al~~-~G-~~vI~v~~npetvs~d~~~~D~ly~ep~~~-e~vl~i 624 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQ-----GVEFDYCCVHAVLALRE-LG-YETIMINYNPETVSTDYDTSDRLYFEPLTF-EDVMNI 624 (1050)
T ss_pred CCceEEEecCccccccc-----ccccchHHHHHHHHHHh-CC-CEEEEEecCCccccccccccceEEEecCCH-HHHHHH
Confidence 34789988887776542 246998 8999999986 45 468888899987421100 00 00001111 223333
Q ss_pred HHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeee-----cccCCHHHHHHHhccCCCCCCHHH
Q 008423 152 KKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGI-----MPINNYKGFLRMTGFCKTKIPAEI 217 (566)
Q Consensus 152 k~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGI-----mPI~s~~~~~r~~~l~Gv~VP~~i 217 (566)
.+| -+.|.+|+|+--. ......+.|.+.| +|++ |- .-+.+...+.++.+-+|+.+|...
T Consensus 625 ~~~--e~idgVI~~~gg~--~~~~la~~le~~G--i~i~-G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~ 688 (1050)
T TIGR01369 625 IEL--EKPEGVIVQFGGQ--TPLNLAKALEEAG--VPIL-GTSPESIDRAEDREKFSELLDELGIPQPKWK 688 (1050)
T ss_pred Hhh--cCCCEEEEccCcH--hHHHHHHHHHHCC--CcEE-CCCHHHHHHHCCHHHHHHHHHHCCcCCCCeE
Confidence 333 3789999887543 3345667777777 5543 31 113444566667777888888753
No 177
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=59.69 E-value=2e+02 Score=29.08 Aligned_cols=133 Identities=15% Similarity=0.270 Sum_probs=76.7
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
.+.+..++.|+|-.-+ . ....++...+++ .|+.+-.=|+. +.+.+.+...|. -+..||+++-+|-.++.
T Consensus 76 ~~~~~gad~i~~H~Ea--~--~~~~~~l~~ik~-~g~k~GlalnP-~Tp~~~i~~~l~-----~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 76 DFAKAGASMITFHVEA--S--EHVDRTLQLIKE-HGCQAGVVLNP-ATPLHHLEYIMD-----KVDLILLMSVNPGFGGQ 144 (220)
T ss_pred HHHHhCCCEEEEcccC--c--ccHHHHHHHHHH-cCCcEEEEeCC-CCCHHHHHHHHH-----hCCeEEEEEecCCCCCc
Confidence 3445566776555433 1 224456667775 78888777766 346666666654 56778888888865543
Q ss_pred CccccCCCcc-cHHHHHHHHHHHc---CCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE-Eecc
Q 008423 92 KFVQIQGGFA-CALDLVKHIRSAY---GDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI-ITQL 166 (566)
Q Consensus 92 ~~~~~~~~F~-~A~dLVk~Ir~~~---gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQl 166 (566)
.|. ...+-|+.+|+.. +..+.|.|.| |- ..+.+++=++||||.+ +-=.
T Consensus 145 -------~fi~~~lekI~~l~~~~~~~~~~~~I~vdG---GI-----------------~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 145 -------SFIPHTLDKLRAVRKMIDESGRDIRLEIDG---GV-----------------KVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred -------eecHhHHHHHHHHHHHHHhcCCCeeEEEEC---CC-----------------CHHHHHHHHHcCCCEEEEeHH
Confidence 233 3666777766543 3235565554 10 1334555567999964 3333
Q ss_pred CCCHHHHHHHHHHHHH
Q 008423 167 FYDTDMFLKFVNDCRQ 182 (566)
Q Consensus 167 ffD~d~f~~f~~~~R~ 182 (566)
+|..+.+.+.++.+|+
T Consensus 198 If~~~d~~~~i~~l~~ 213 (220)
T PRK08883 198 IFGQPDYKAVIDEMRA 213 (220)
T ss_pred HhCCCCHHHHHHHHHH
Confidence 4544445555666654
No 178
>PTZ00413 lipoate synthase; Provisional
Probab=59.59 E-value=92 Score=34.46 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+.+++.+.-+.++++|++.+++-.||-... .++++.+-.+.|+.||+..+
T Consensus 178 D~eEp~~vA~av~~~Gl~~~VVTSv~RDDL------~D~ga~~~a~~I~~Ir~~~p 227 (398)
T PTZ00413 178 DPNEPEKVAKAVAEMGVDYIVMTMVDRDDL------PDGGASHVARCVELIKESNP 227 (398)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEcCCCC------ChhhHHHHHHHHHHHHccCC
Confidence 778888888888999999998888875322 23677788888889987554
No 179
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=59.50 E-value=1.1e+02 Score=33.60 Aligned_cols=126 Identities=13% Similarity=0.225 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE-EecCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV-AGYPEGHPDTIGP 135 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV-AgyPEgHpe~~~~ 135 (566)
|.++.+.+.+.++.+.+.|++.|..+..|-..-+.. ........+|++.|++..+ .+.|-. ..+|..- +.
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d----~~~~~~l~~Ll~~l~~~~~-~~~ir~~~~~p~~i----~~ 221 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHD----LPEKPCLADLLSALHDIPG-LLRIRFLTSHPKDI----SQ 221 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccC----CCCcccHHHHHHHHHhcCC-ccEEEEeccChhhc----CH
Confidence 355778999999999899999998654443222111 0112236778887765333 234433 2344321 11
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEE-----------Eecc--CCCHHHHHHHHHHHHHc--CCCC--cEEeeecccCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLI-----------ITQL--FYDTDMFLKFVNDCRQI--GITC--PIVPGIMPINN 198 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFi-----------ITQl--ffD~d~f~~f~~~~R~~--Gi~v--PIIpGImPI~s 198 (566)
+.++.|+ +..+|+.++ .-.| -|+.+.+.+.++.+|++ |+.+ -+|.|+ |=.|
T Consensus 222 ----------ell~~l~-~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGf-PGET 289 (418)
T PRK14336 222 ----------KLIDAMA-HLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGF-PSET 289 (418)
T ss_pred ----------HHHHHHH-hcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEEC-CCCC
Confidence 2233333 322333322 1112 47889999999999998 6542 456776 3455
Q ss_pred HHHHH
Q 008423 199 YKGFL 203 (566)
Q Consensus 199 ~~~~~ 203 (566)
...|.
T Consensus 290 ~edf~ 294 (418)
T PRK14336 290 EEQFN 294 (418)
T ss_pred HHHHH
Confidence 55554
No 180
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=59.08 E-value=2e+02 Score=30.15 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=50.9
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCCCCCCCCccccCCCcccHHHHH-HHHHHHcCCceeEEEEecCCCCCCCCCCCCCCC
Q 008423 63 KIDHALQTIKS-NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV-KHIRSAYGDYFGITVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 63 ~L~~~L~~a~~-~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLV-k~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~ 140 (566)
+....+..+.+ .|++++.+|..|.+-+ ....+.+ +.++ ..|-. -++...||-+.++
T Consensus 120 ~~~~~~~~~~~~~g~k~v~~l~~d~~~g-----------~~~~~~~~~~~~-~~G~~-vv~~~~~~~~~~D--------- 177 (359)
T TIGR03407 120 QIIPAVDYLLSKKGAKRFFLLGSDYVFP-----------RTANKIIKAYLK-SLGGT-VVGEDYTPLGHTD--------- 177 (359)
T ss_pred HHHHHHHHHHhccCCceEEEecCccHHH-----------HHHHHHHHHHHH-HcCCE-EEeeEEecCChHh---------
Confidence 33444444555 5999998886553211 0123333 3333 34522 2355556644321
Q ss_pred ccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCC
Q 008423 141 NESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 141 ~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~ 186 (566)
+...+.+|+ ++|+|.|+.-..- +....|++.+|+.|++
T Consensus 178 ---~s~~v~~l~---~~~pDav~~~~~~--~~~~~~~~~~~~~G~~ 215 (359)
T TIGR03407 178 ---FQTIINKIK---AFKPDVVFNTLNG--DSNVAFFKQLKNAGIT 215 (359)
T ss_pred ---HHHHHHHHH---HhCCCEEEEeccC--CCHHHHHHHHHHcCCC
Confidence 113344443 4699999865443 3446789999999986
No 181
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=59.06 E-value=1.8e+02 Score=32.29 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHH
Q 008423 75 GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLK 152 (566)
Q Consensus 75 GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk 152 (566)
+|+.|..-.|.|..- .-....+|++.|++.++. ...+.+-++|+.- +. +.++.|+
T Consensus 103 ~v~~i~fgGGTPs~l---------~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~l----t~----------e~l~~L~ 159 (453)
T PRK13347 103 RVSQLHWGGGTPTIL---------NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTV----TA----------EMLQALA 159 (453)
T ss_pred eEEEEEEcCcccccC---------CHHHHHHHHHHHHHhCCCCCCceEEEEeccccC----CH----------HHHHHHH
Confidence 566666555555421 112478888889886542 2345555666432 11 2333333
Q ss_pred HHHHcCCcEEE-e------------ccCCCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHHH
Q 008423 153 KKVDAGADLII-T------------QLFYDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 153 ~KvdAGAdFiI-T------------QlffD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~r 204 (566)
++|.+.+- - -=.++.+.+.+-++.+|++|++ +-+|.|+ |-+|..++..
T Consensus 160 ---~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~Gl-Pgqt~e~~~~ 223 (453)
T PRK13347 160 ---ALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGL-PHQTVESFRE 223 (453)
T ss_pred ---HcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeC-CCCCHHHHHH
Confidence 36877551 1 1236788888899999999974 4467887 6677776653
No 182
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=59.04 E-value=2.4e+02 Score=29.62 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce--eEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF--GITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F--~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+.+.++.+.+.||+.|+++.. .|+.+ .-.-+.=.++++...+..+... -+||.+ .
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gs----tGE~~---~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~---~-------- 86 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGG----TGEFF---SLTPDEYSQVVRAAVETTAGRVPVIAGAGG---G-------- 86 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC----CcCcc---cCCHHHHHHHHHHHHHHhCCCCcEEEecCC---C--------
Confidence 47899999999999999999997642 12110 1112234566776655443333 334421 1
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcE-EEeccCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADL-IITQLFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~ 212 (566)
.++-++..+.=.++|||. +++.++| +.+.+.+|.+.+.++ .++||+.== .+|+.
T Consensus 87 -------t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~-~~lpi~lYn--------------~~g~~ 144 (303)
T PRK03620 87 -------TAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKS-TDLGVIVYN--------------RDNAV 144 (303)
T ss_pred -------HHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEc--------------CCCCC
Confidence 113455555556789996 4555555 457777777776554 357876421 24566
Q ss_pred CCHHHHHHhC
Q 008423 213 IPAEITAALE 222 (566)
Q Consensus 213 VP~~il~~Le 222 (566)
+|.+++.+|.
T Consensus 145 l~~~~l~~L~ 154 (303)
T PRK03620 145 LTADTLARLA 154 (303)
T ss_pred CCHHHHHHHH
Confidence 7777666664
No 183
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=58.85 E-value=2.6e+02 Score=30.03 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=77.2
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc--cHHHHHHHHHHHcCCceeEEEEecCCCC
Q 008423 52 MHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA--CALDLVKHIRSAYGDYFGITVAGYPEGH 129 (566)
Q Consensus 52 ~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~--~A~dLVk~Ir~~~gd~F~IGVAgyPEgH 129 (566)
.|.....++.++..+.+..+.++||.-|=+=-||.-.+.. + ..+|. ...+.++.+++..+ .-.+++..-|...
T Consensus 14 ~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s-~---~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~ 88 (333)
T TIGR03217 14 MHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSS-F---NYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIG 88 (333)
T ss_pred CcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcc-c---cCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCcc
Confidence 3556667899999999999999999999875555422111 1 11122 13455666655443 2466666666321
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-eccCCCHHHHHHHHHHHHHcCCCCcEEeeec
Q 008423 130 PDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-TQLFYDTDMFLKFVNDCRQIGITCPIVPGIM 194 (566)
Q Consensus 130 pe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm 194 (566)
..+.+++..++|++.|- .=.+-+.+...+.++.+|+.|.. +...+|
T Consensus 89 -----------------~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~--v~~~l~ 135 (333)
T TIGR03217 89 -----------------TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMD--TVGFLM 135 (333)
T ss_pred -----------------CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCe--EEEEEE
Confidence 24557888899999642 22456788899999999999965 555554
No 184
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=58.79 E-value=74 Score=34.55 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc--------------ccCC
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFV--------------QIQG 98 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~--------------~~~~ 98 (566)
..+.++|..+.+ .|.=+++|- +++.++..+.+...+.....++++=.|=.+..-+.-. ....
T Consensus 57 V~~~~mA~~la~-~g~~~~iHk---~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~Ah 132 (346)
T PRK05096 57 VGTFEMAKALAS-FDILTAVHK---HYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVAN 132 (346)
T ss_pred cccHHHHHHHHH-CCCeEEEec---CCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 346677877775 688888884 4466665555555554444455543333321100000 0011
Q ss_pred Cc-ccHHHHHHHHHHHcCCce
Q 008423 99 GF-ACALDLVKHIRSAYGDYF 118 (566)
Q Consensus 99 ~F-~~A~dLVk~Ir~~~gd~F 118 (566)
+. .+.++.|+.||+.+++.+
T Consensus 133 Ghs~~~i~~ik~ik~~~P~~~ 153 (346)
T PRK05096 133 GYSEHFVQFVAKAREAWPDKT 153 (346)
T ss_pred CcHHHHHHHHHHHHHhCCCCc
Confidence 22 246888999999887643
No 185
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=58.77 E-value=96 Score=32.76 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec----C---CCCCCC----CCc----cccC
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR----G---DPPHGQ----DKF----VQIQ 97 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr----G---Dpp~~~----~~~----~~~~ 97 (566)
+...++...+++...+++.+-|+- +.+...+.+....+.+.|+.-|.++. | |..... ... -..+
T Consensus 143 ~~~~~i~~~v~~~~~~Pv~vKlsp-~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~ 221 (310)
T PRK02506 143 ETTEQILEEVFTYFTKPLGVKLPP-YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGD 221 (310)
T ss_pred HHHHHHHHHHHHhcCCccEEecCC-CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCch
Confidence 446677888887778888888887 45777887777777777877765553 1 221110 000 0012
Q ss_pred CCcccHHHHHHHHHHHcCCce-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCC-CHHHH
Q 008423 98 GGFACALDLVKHIRSAYGDYF-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFY-DTDMF 173 (566)
Q Consensus 98 ~~F~~A~dLVk~Ir~~~gd~F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlff-D~d~f 173 (566)
..+..|+.+|+.+++..+..+ -||+.|-= + -+...+++.|||+. +-|-++| +++.+
T Consensus 222 ~i~p~al~~v~~~~~~~~~~ipIig~GGI~-------s-------------~~da~e~i~aGA~~Vqv~ta~~~~gp~~~ 281 (310)
T PRK02506 222 YIKPTALANVRAFYQRLNPSIQIIGTGGVK-------T-------------GRDAFEHILCGASMVQVGTALHKEGPAVF 281 (310)
T ss_pred hccHHHHHHHHHHHHhcCCCCCEEEECCCC-------C-------------HHHHHHHHHcCCCHHhhhHHHHHhChHHH
Confidence 234568888888887764333 34444421 1 22346677999995 6788888 78888
Q ss_pred HHHHHHHHH
Q 008423 174 LKFVNDCRQ 182 (566)
Q Consensus 174 ~~f~~~~R~ 182 (566)
.+..+.+++
T Consensus 282 ~~i~~~L~~ 290 (310)
T PRK02506 282 ERLTKELKA 290 (310)
T ss_pred HHHHHHHHH
Confidence 886666543
No 186
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=58.54 E-value=2.1e+02 Score=29.68 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec---CCCC--CCCCCc-cccCCCcc-----
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR---GDPP--HGQDKF-VQIQGGFA----- 101 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr---GDpp--~~~~~~-~~~~~~F~----- 101 (566)
+...++...+++..++++..=++. +.+.+.+....+.++|++-|.+.. |-.. ...... ....+++.
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIK 219 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhh
Confidence 567788888887778877777653 444566667778899998887642 3111 000000 00112222
Q ss_pred -cHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCCCHHHHHHHHH
Q 008423 102 -CALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFYDTDMFLKFVN 178 (566)
Q Consensus 102 -~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlffD~d~f~~f~~ 178 (566)
.+.++++.+++..+- --||+.+.= + .+...+.+.+|||. +=|-++++++.+.++.+
T Consensus 220 ~~~l~~v~~i~~~~~i-pvi~~GGI~-------s-------------~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 220 PIALRMVYDVYKMVDI-PIIGVGGIT-------S-------------FEDALEFLMAGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred HHHHHHHHHHHhcCCC-CEEEECCCC-------C-------------HHHHHHHHHcCCCceeecHHHhcCchHHHHHHH
Confidence 356778888775542 234433321 1 22234455689996 56788899988888777
Q ss_pred HHH
Q 008423 179 DCR 181 (566)
Q Consensus 179 ~~R 181 (566)
.++
T Consensus 279 ~l~ 281 (300)
T TIGR01037 279 GLI 281 (300)
T ss_pred HHH
Confidence 765
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=58.47 E-value=48 Score=33.37 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCceeEE-eccccC----------------CHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 35 TLDIANRMQNTICVETMMH-LTCTNM----------------PVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~H-LTCrd~----------------n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
.-++.+.+. .+|+.+..| +.+.+. ....+++.+..|+++|++.|.+..|..+.
T Consensus 42 ~~~~~~~l~-~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~ 111 (258)
T PRK09997 42 IEELKQVLA-SNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPA 111 (258)
T ss_pred HHHHHHHHH-HcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 444555555 589999874 444332 13557888899999999999888887543
No 188
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=58.43 E-value=1.9e+02 Score=31.64 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe---c-----------CCCCCCCCCccccCC
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL---R-----------GDPPHGQDKFVQIQG 98 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL---r-----------GDpp~~~~~~~~~~~ 98 (566)
+...+++..+++...+++..-|+- +...+.+....+.++|++.|.+. . |-|.-.+. ...+
T Consensus 154 ~~~~~i~~~v~~~~~~Pv~vKl~p---~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~---~~~g 227 (420)
T PRK08318 154 ELVEMYTRWVKRGSRLPVIVKLTP---NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGK---SSHG 227 (420)
T ss_pred HHHHHHHHHHHhccCCcEEEEcCC---CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCC---CCcc
Confidence 567788888887778898888873 33346677777888999887741 1 11110000 0123
Q ss_pred Ccc------cHHHHHHHHHHHcC--CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCC
Q 008423 99 GFA------CALDLVKHIRSAYG--DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFY 168 (566)
Q Consensus 99 ~F~------~A~dLVk~Ir~~~g--d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlff 168 (566)
+|. .+.+.|+.+++..+ +---||+.|--. -+...+++.|||+. +-|-++|
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s--------------------~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIET--------------------WRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCC--------------------HHHHHHHHHhCCChheeeeeecc
Confidence 333 35788888877652 212344443221 22234556799996 5688888
Q ss_pred -CHHHHHHHHHHHH
Q 008423 169 -DTDMFLKFVNDCR 181 (566)
Q Consensus 169 -D~d~f~~f~~~~R 181 (566)
+++.+.+..+.++
T Consensus 288 ~gp~ii~~I~~~L~ 301 (420)
T PRK08318 288 YGFRIVEDMISGLS 301 (420)
T ss_pred CCchhHHHHHHHHH
Confidence 7888777766643
No 189
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=58.42 E-value=76 Score=32.94 Aligned_cols=173 Identities=18% Similarity=0.223 Sum_probs=98.6
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
++=.||++ ..-....++.+.+|+++||..++++ |.... .|..+.+| .++|+ ....++..+|.-
T Consensus 5 DtH~HL~~-~~~~~d~~~vi~~a~~~gv~~~~~~-g~~~~----------~~~~~~~l----a~~y~-~v~~~~G~HP~~ 67 (256)
T COG0084 5 DTHCHLDF-EEFDEDRDEVIARAREAGVKKMVVV-GTDLE----------DFKRALEL----AEKYP-NVYAAVGVHPLD 67 (256)
T ss_pred EeeeCCCc-hhhcCCHHHHHHHHHHcCCcEEEEe-ecCHH----------HHHHHHHH----HHhCC-CeEEEEeeCCCc
Confidence 44567776 2223456678889999999999966 33321 23345553 34576 467778888876
Q ss_pred CCCCCCCCCCCCccchHHHHHHHHHHHHc----------CCcEEEeccC-C--CHHHHHHHHHHHHHcCCCCcEEeeecc
Q 008423 129 HPDTIGPDGVASNESYQSDLLYLKKKVDA----------GADLIITQLF-Y--DTDMFLKFVNDCRQIGITCPIVPGIMP 195 (566)
Q Consensus 129 Hpe~~~~~~~~~~~~~~~dl~~Lk~KvdA----------GAdFiITQlf-f--D~d~f~~f~~~~R~~Gi~vPIIpGImP 195 (566)
+- ... +.+++.|.+.+.. |=||.-...- . -.+.|.++++.+++.+ .||+.=
T Consensus 68 ~~--~~~---------~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~--lPviIH--- 131 (256)
T COG0084 68 AD--EHS---------EEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELN--LPVIIH--- 131 (256)
T ss_pred cc--ccc---------HHHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcC--CCEEEE---
Confidence 21 111 2566666666642 6676544332 2 3456777888888766 777643
Q ss_pred cCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHH----HHHHHHHHHHHHcC----CCeEEEEcCCchHHHHH
Q 008423 196 INNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGI----HLGAEMCKKILAHG----IKTLHLYTLNMEKSALA 267 (566)
Q Consensus 196 I~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv----~la~e~i~~L~~~G----v~GiHfyTlN~e~~v~~ 267 (566)
+.+... ++++.|+.... ..-|| .=..++++++++.| +.|+ .|+...+...+
T Consensus 132 --~R~A~~------------d~~~iL~~~~~-----~~~gi~HcFsGs~e~a~~~~d~G~yisisG~--itfk~a~~~~e 190 (256)
T COG0084 132 --TRDAHE------------DTLEILKEEGA-----PVGGVLHCFSGSAEEARKLLDLGFYISISGI--VTFKNAEKLRE 190 (256)
T ss_pred --ccccHH------------HHHHHHHhcCC-----CCCEEEEccCCCHHHHHHHHHcCeEEEECce--eecCCcHHHHH
Confidence 222111 22233322110 00011 11257888888875 5553 45566778888
Q ss_pred HHHHcCCC
Q 008423 268 ILLNLGLI 275 (566)
Q Consensus 268 IL~~l~l~ 275 (566)
++..+.+-
T Consensus 191 v~~~iPld 198 (256)
T COG0084 191 VARELPLD 198 (256)
T ss_pred HHHhCCHh
Confidence 88887653
No 190
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=58.38 E-value=1.9e+02 Score=32.02 Aligned_cols=131 Identities=9% Similarity=0.119 Sum_probs=69.4
Q ss_pred CCchhHHHHHHHHHhhcCCceeEEe-ccccC---------------CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCc
Q 008423 30 STADLTLDIANRMQNTICVETMMHL-TCTNM---------------PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF 93 (566)
Q Consensus 30 ~~~~~Sl~la~~lq~~~Gle~i~HL-TCrd~---------------n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~ 93 (566)
..+..++.++..+.. .+++.|..- |+... +..+....+.-++..|.+.|-++..|-.-+
T Consensus 113 ~~S~~s~ava~~~~~-~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~~yG---- 187 (458)
T cd06375 113 SYSSVSIQVANLLRL-FQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYG---- 187 (458)
T ss_pred CCchHHHHHHHHhhh-ccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCchHH----
Confidence 334556777766664 677766541 22111 111222233334678999998886443211
Q ss_pred cccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCCCCCCCCccchHHHHHHHHHHH--HcCCcEEEeccCCCH
Q 008423 94 VQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIGPDGVASNESYQSDLLYLKKKV--DAGADLIITQLFYDT 170 (566)
Q Consensus 94 ~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv--dAGAdFiITQlffD~ 170 (566)
-..+..+.+.++ +.| .||... .+|.... + .++....+|+ +++|+.||. +-..
T Consensus 188 ------~~~~~~~~~~~~-~~g--i~i~~~~~i~~~~~-----~---------~d~~~~l~~l~~~~~a~vVvl--~~~~ 242 (458)
T cd06375 188 ------ETGIEAFEQEAR-LRN--ICIATSEKVGRSAD-----R---------KSYDSVIRKLLQKPNARVVVL--FTRS 242 (458)
T ss_pred ------HHHHHHHHHHHH-HCC--eeEEEEEEecCCCC-----H---------HHHHHHHHHHhccCCCEEEEE--ecCh
Confidence 001233334343 344 666532 3443211 0 3455444444 368998884 4455
Q ss_pred HHHHHHHHHHHHcCCCCcEE
Q 008423 171 DMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 171 d~f~~f~~~~R~~Gi~vPII 190 (566)
+....+++++++.|++.++|
T Consensus 243 ~~~~~ll~~a~~~g~~~~wi 262 (458)
T cd06375 243 EDARELLAAAKRLNASFTWV 262 (458)
T ss_pred HHHHHHHHHHHHcCCcEEEE
Confidence 66788999999999883333
No 191
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=58.24 E-value=1.5e+02 Score=31.10 Aligned_cols=147 Identities=14% Similarity=0.237 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhhc-CCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC--cc----ccCCCcccHHH
Q 008423 33 DLTLDIANRMQNTI-CVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK--FV----QIQGGFACALD 105 (566)
Q Consensus 33 ~~Sl~la~~lq~~~-Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~--~~----~~~~~F~~A~d 105 (566)
+-.++++..+.-.. ..+++.-+.++|-.+ .++..|.+.++.|+.-|-=. |..+.-. +. ..--+|+.=++
T Consensus 66 ~iv~em~~eiLp~v~~tPViaGv~atDP~~-~~~~fl~~lk~~Gf~GV~Nf---PTvgliDG~fR~~LEe~Gmgy~~EVe 141 (268)
T PF09370_consen 66 EIVMEMAREILPVVKDTPVIAGVCATDPFR-DMDRFLDELKELGFSGVQNF---PTVGLIDGQFRQNLEETGMGYDREVE 141 (268)
T ss_dssp HHHHHHHHHHGGG-SSS-EEEEE-TT-TT---HHHHHHHHHHHT-SEEEE----S-GGG--HHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHhhhhhccCCCEEEEecCcCCCC-cHHHHHHHHHHhCCceEEEC---CcceeeccHHHHHHHhcCCCHHHHHH
Confidence 45677776666544 478888888888765 67788888888776665522 2221100 00 11123444456
Q ss_pred HHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc------------CCCHHHH
Q 008423 106 LVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL------------FYDTDMF 173 (566)
Q Consensus 106 LVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl------------ffD~d~f 173 (566)
+|+..+++ +-|+++.+..+| +. ++-.+||||.|+-.+ ..+.+..
T Consensus 142 mi~~A~~~--gl~T~~yvf~~e-------------------~A---~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a 197 (268)
T PF09370_consen 142 MIRKAHEK--GLFTTAYVFNEE-------------------QA---RAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEA 197 (268)
T ss_dssp HHHHHHHT--T-EE--EE-SHH-------------------HH---HHHHHHT-SEEEEE-SS----------S--HHHH
T ss_pred HHHHHHHC--CCeeeeeecCHH-------------------HH---HHHHHcCCCEEEecCCccCCCCcCccccCCHHHH
Confidence 66666543 348888877552 33 344489999998777 3344443
Q ss_pred H----HHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 174 L----KFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 174 ~----~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
. ++.+.+++..-++-++.-==||.+.+.+.++.+
T Consensus 198 ~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~ 235 (268)
T PF09370_consen 198 AERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLR 235 (268)
T ss_dssp HHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHh
Confidence 3 344555554445544444458999887776554
No 192
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=58.17 E-value=53 Score=35.16 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhhcC-------CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecC----CC---CC-C-CCCcccc
Q 008423 33 DLTLDIANRMQNTIC-------VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG----DP---PH-G-QDKFVQI 96 (566)
Q Consensus 33 ~~Sl~la~~lq~~~G-------le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrG----Dp---p~-~-~~~~~~~ 96 (566)
+...++++.+++... ++++.-|+- +.+.+++.+..+.+.+.|++-|.+.-= +. +. . +.-+-..
T Consensus 189 ~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP-~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG 267 (335)
T TIGR01036 189 AELRDLLTAVKQEQDGLRRVHRVPVLVKIAP-DLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG 267 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCceEEEeCC-CCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC
Confidence 445666777766554 888888886 566678889989899999998886421 11 00 0 0000001
Q ss_pred CCCcccHHHHHHHHHHHcCCce-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCC-CHHH
Q 008423 97 QGGFACALDLVKHIRSAYGDYF-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFY-DTDM 172 (566)
Q Consensus 97 ~~~F~~A~dLVk~Ir~~~gd~F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlff-D~d~ 172 (566)
+..+..|+.+|+.+++..+..+ -||+.|-=. -+...+++.|||++ +-|-+++ +++.
T Consensus 268 ~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~--------------------~~da~e~l~aGA~~Vqv~ta~~~~Gp~~ 327 (335)
T TIGR01036 268 KPLQDKSTEIIRRLYAELQGRLPIIGVGGISS--------------------AQDALEKIRAGASLLQIYSGFIYWGPPL 327 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCC--------------------HHHHHHHHHcCCcHHHhhHHHHHhCchH
Confidence 1224457888888877664334 344443211 23356778899997 4577777 4766
Q ss_pred HHHHH
Q 008423 173 FLKFV 177 (566)
Q Consensus 173 f~~f~ 177 (566)
+.+..
T Consensus 328 ~~~i~ 332 (335)
T TIGR01036 328 VKEIV 332 (335)
T ss_pred HHHHH
Confidence 65543
No 193
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=57.92 E-value=18 Score=38.15 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA 113 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~ 113 (566)
++-.|+-..+.|.++||++|+.++|-.-+. ...-|+.+.+|-..++++
T Consensus 34 dKP~IqYiVeEa~~aGIe~i~iVTgr~K~~------IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 34 DKPLIQYIVEEAVAAGIEEILIVTGRGKRA------IEDHFDTSYELENTLEKR 81 (291)
T ss_pred CchhHHHHHHHHHHcCCCEEEEEecCCcch------HHHhCcCcHHHHHHHHHh
Confidence 467788999999999999999999976432 245688888887777654
No 194
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=57.85 E-value=2.6e+02 Score=30.41 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCCCCccccCCCcccHHHHHHHHHH
Q 008423 36 LDIANRMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNGIQNVLAL-RGDPPHGQDKFVQIQGGFACALDLVKHIRS 112 (566)
Q Consensus 36 l~la~~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~GIrNILaL-rGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~ 112 (566)
..+...+-+ .|.++++ +++| +.+++..+++...+.|..+|.++ ||-..-. +.+..+.-+..|..+|+
T Consensus 215 ~~LL~~~a~-~gkPVil---k~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp------~~~~~~ldl~~i~~lk~ 284 (360)
T PRK12595 215 FELLKAAGR-VNKPVLL---KRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYE------KATRNTLDISAVPILKQ 284 (360)
T ss_pred HHHHHHHHc-cCCcEEE---eCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCC------CCCCCCcCHHHHHHHHH
Confidence 455555554 5777665 4555 88999999999999999999888 6864311 01111122333555676
Q ss_pred HcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHH--HHHHHHHcCCc-EEEeccC------------CCHHHHHHHH
Q 008423 113 AYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLL--YLKKKVDAGAD-LIITQLF------------YDTDMFLKFV 177 (566)
Q Consensus 113 ~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~--~Lk~KvdAGAd-FiITQlf------------fD~d~f~~f~ 177 (566)
.++ +-||+ .| .|.-.. .++. --+.=+.+||| .||-=-| -+++.|.+++
T Consensus 285 ~~~--~PV~~--d~-~Hs~G~------------r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~ 347 (360)
T PRK12595 285 ETH--LPVMV--DV-THSTGR------------RDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFL 347 (360)
T ss_pred HhC--CCEEE--eC-CCCCcc------------hhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCCHHHHHHHH
Confidence 664 34544 13 343211 1222 33344679998 4443333 3455566777
Q ss_pred HHHHH
Q 008423 178 NDCRQ 182 (566)
Q Consensus 178 ~~~R~ 182 (566)
+.+|+
T Consensus 348 ~~i~~ 352 (360)
T PRK12595 348 DELKP 352 (360)
T ss_pred HHHHH
Confidence 77665
No 195
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=57.60 E-value=2.3e+02 Score=29.43 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=79.8
Q ss_pred ccccccchhhccCCCcCEEEecCCCC--------CCCc----hhHHHHHHHHHhhcCCceeEEeccc----c---CCHHH
Q 008423 3 WRTCSSGWTAWWPTTRHSATSRWGAG--------GSTA----DLTLDIANRMQNTICVETMMHLTCT----N---MPVEK 63 (566)
Q Consensus 3 ~~~~~~~~~~~~~~~p~fVsVTwgag--------G~~~----~~Sl~la~~lq~~~Gle~i~HLTCr----d---~n~~~ 63 (566)
|.....|..+.+....+.|.+-.... +.+. ....+.+..+++ .|+.+...+++. + .+.+.
T Consensus 72 ~~~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~-~G~~v~~~i~~~f~~~~~~~~~~~~ 150 (274)
T cd07938 72 LVPNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA-AGLRVRGYVSTAFGCPYEGEVPPER 150 (274)
T ss_pred ECCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeEecCCCCCCCCHHH
Confidence 44445566677766666655544322 1222 334455666664 799987766643 1 26678
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccc
Q 008423 64 IDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNES 143 (566)
Q Consensus 64 L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~ 143 (566)
+.+....+.++|++.|-+- |.. |- ..-....+||+.+++.+++ ..|++-++=. .-
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~--DT~--G~------~~P~~v~~lv~~l~~~~~~-~~i~~H~Hnd-------~G------- 205 (274)
T cd07938 151 VAEVAERLLDLGCDEISLG--DTI--GV------ATPAQVRRLLEAVLERFPD-EKLALHFHDT-------RG------- 205 (274)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCC--Cc------cCHHHHHHHHHHHHHHCCC-CeEEEEECCC-------CC-------
Confidence 8888888999999765421 211 10 0111378899999988764 5666654322 11
Q ss_pred hHHHHHHHHHHHHcCCcEEEe
Q 008423 144 YQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 144 ~~~dl~~Lk~KvdAGAdFiIT 164 (566)
.-+.....=++|||++|=|
T Consensus 206 --lA~AN~laA~~aGa~~id~ 224 (274)
T cd07938 206 --QALANILAALEAGVRRFDS 224 (274)
T ss_pred --hHHHHHHHHHHhCCCEEEE
Confidence 3355556668899997754
No 196
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=57.47 E-value=1.8e+02 Score=31.02 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCcEEEeccC-CCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 146 SDLLYLKKKVDAGADLIITQLF-YDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlf-fD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
++.++++.-+++|+++|+--+- -+.+...++++.+|+.+-++||+.|- +.|.+.++.+.+
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~--v~t~~~A~~l~~ 154 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGN--VVTAEAARDLID 154 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECC--CCCHHHHHHHHh
Confidence 4577888889999998763332 35567788899999876568888754 466666655433
No 197
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=57.18 E-value=2.2e+02 Score=28.77 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
..+..+++ +|+|+|+.-. ..+....+++.+++.|.++||+.
T Consensus 182 ~~~~~~~~---~~~d~i~~~~--~~~~~~~~~~~~~~~g~~~~i~~ 222 (334)
T cd06347 182 AQLTKIKA---KNPDVIFLPG--YYTEVGLIAKQARELGIKVPILG 222 (334)
T ss_pred HHHHHHHh---cCCCEEEEcC--chhhHHHHHHHHHHcCCCCcEEe
Confidence 45555543 6899998865 44567788999999999888764
No 198
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=57.09 E-value=1.9e+02 Score=28.07 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=71.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~ 136 (566)
-..+...+.+.+..+.+.|++.|=. + . .++. . ...+....+.++.|++..+..+.+.+-.|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~G~~~i~l-~-~--~d~~-~---~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~--------- 73 (220)
T PRK05581 11 LSADFARLGEEVKAVEAAGADWIHV-D-V--MDGH-F---VPNLTIGPPVVEAIRKVTKLPLDVHLMVENP--------- 73 (220)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEE-e-C--ccCC-c---CCCcCcCHHHHHHHHhcCCCcEEEEeeeCCH---------
Confidence 3456677888999999999999886 1 1 1111 0 0122235677788886554235566666521
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHH
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~ 205 (566)
.+++..-.++|+|.++-..--+ +...++++.+++.|+. +.+.+.|-+....++.+
T Consensus 74 -----------~~~i~~~~~~g~d~v~vh~~~~-~~~~~~~~~~~~~~~~--~g~~~~~~t~~e~~~~~ 128 (220)
T PRK05581 74 -----------DRYVPDFAKAGADIITFHVEAS-EHIHRLLQLIKSAGIK--AGLVLNPATPLEPLEDV 128 (220)
T ss_pred -----------HHHHHHHHHcCCCEEEEeeccc-hhHHHHHHHHHHcCCE--EEEEECCCCCHHHHHHH
Confidence 2223333489999988887765 5667889999988743 33333333444444444
No 199
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.03 E-value=2.1e+02 Score=28.38 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHH
Q 008423 34 LTLDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRS 112 (566)
Q Consensus 34 ~Sl~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~ 112 (566)
...+++..+++ .|+++...+....+ +.+.+.+....+.++|+..|-+- |.... ..-....+||+.+++
T Consensus 109 ~~~~~v~~ak~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~--Dt~G~--------~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 109 RIEEAVKYAKE-LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA--DTVGI--------MTPEDVAELVRALRE 177 (237)
T ss_dssp HHHHHHHHHHH-TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE--ETTS---------S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee--CccCC--------cCHHHHHHHHHHHHH
Confidence 34455666664 79999766655444 77888999999999999887532 22111 011136799999999
Q ss_pred HcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 113 AYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 113 ~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
.+++ ..||+-++=. .. .-+.....-++|||+.|=|
T Consensus 178 ~~~~-~~l~~H~Hnd-------~G---------la~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 178 ALPD-IPLGFHAHND-------LG---------LAVANALAALEAGADRIDG 212 (237)
T ss_dssp HSTT-SEEEEEEBBT-------TS----------HHHHHHHHHHTT-SEEEE
T ss_pred hccC-CeEEEEecCC-------cc---------chhHHHHHHHHcCCCEEEc
Confidence 9886 6677655332 21 3466677788999998744
No 200
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.03 E-value=2.3e+02 Score=28.87 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=81.2
Q ss_pred ccccchhhccCCCcCEEEecCCCC--------CCCchhH----HHHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHHH
Q 008423 5 TCSSGWTAWWPTTRHSATSRWGAG--------GSTADLT----LDIANRMQNTICVETMMHLTCTNM-PVEKIDHALQTI 71 (566)
Q Consensus 5 ~~~~~~~~~~~~~p~fVsVTwgag--------G~~~~~S----l~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~a 71 (566)
.+.++..+......+.|.+..... +.+++.+ .++++.+++ .|+++...+....+ +.+.+.+....+
T Consensus 70 ~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
T cd07939 70 AVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD-RGLFVSVGAEDASRADPDFLIEFAEVA 148 (259)
T ss_pred CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEeeccCCCCCHHHHHHHHHHH
Confidence 556677777777777766643211 1222223 356666664 79988766665554 578888888899
Q ss_pred HHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 72 KSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 72 ~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
.++|++.|- | .|..... .-....+||+.+++.++ ..||+-+ |- +.. .-+...
T Consensus 149 ~~~G~~~i~-l-~DT~G~~--------~P~~v~~lv~~l~~~~~--~~l~~H~----Hn---~~G---------la~An~ 200 (259)
T cd07939 149 QEAGADRLR-F-ADTVGIL--------DPFTTYELIRRLRAATD--LPLEFHA----HN---DLG---------LATANT 200 (259)
T ss_pred HHCCCCEEE-e-CCCCCCC--------CHHHHHHHHHHHHHhcC--CeEEEEe----cC---CCC---------hHHHHH
Confidence 999998764 3 2332111 11137789999998776 4565543 31 111 234555
Q ss_pred HHHHHcCCcEEEeccC
Q 008423 152 KKKVDAGADLIITQLF 167 (566)
Q Consensus 152 k~KvdAGAdFiITQlf 167 (566)
..=+++||+.|=+-+.
T Consensus 201 laAi~aG~~~vd~s~~ 216 (259)
T cd07939 201 LAAVRAGATHVSVTVN 216 (259)
T ss_pred HHHHHhCCCEEEEecc
Confidence 5567899998766544
No 201
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=56.95 E-value=2.7e+02 Score=29.73 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC--CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHH
Q 008423 76 IQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG--DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKK 153 (566)
Q Consensus 76 IrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g--d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~ 153 (566)
++.|..-.|.|.--. -+.-.+|++.|++.++ ....|.+-++|+.- +. ..++.|+
T Consensus 52 v~~i~~GGGtPs~l~---------~~~l~~ll~~i~~~~~~~~~~eitie~np~~l----t~----------e~l~~l~- 107 (360)
T TIGR00539 52 LESIFIGGGTPNTLS---------VEAFERLFESIYQHASLSDDCEITTEANPELI----TA----------EWCKGLK- 107 (360)
T ss_pred ccEEEeCCCchhcCC---------HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC----CH----------HHHHHHH-
Confidence 666665556554211 1124556777776543 23456666777542 11 2333333
Q ss_pred HHHcCCcEE-E-----e-------ccCCCHHHHHHHHHHHHHcCCC-C--cEEeeecccCCHHHHHH
Q 008423 154 KVDAGADLI-I-----T-------QLFYDTDMFLKFVNDCRQIGIT-C--PIVPGIMPINNYKGFLR 204 (566)
Q Consensus 154 KvdAGAdFi-I-----T-------QlffD~d~f~~f~~~~R~~Gi~-v--PIIpGImPI~s~~~~~r 204 (566)
++|.+.+ | . .-.++.+.+.+-++.++++|+. + -+|.|+ |-+|.+.+.+
T Consensus 108 --~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl-Pgqt~~~~~~ 171 (360)
T TIGR00539 108 --GAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGL-PLQTLNSLKE 171 (360)
T ss_pred --HcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCC-CCCCHHHHHH
Confidence 4687644 1 0 2245677788888889988863 2 235555 5666665543
No 202
>PRK07695 transcriptional regulator TenI; Provisional
Probab=56.78 E-value=70 Score=31.20 Aligned_cols=144 Identities=17% Similarity=0.258 Sum_probs=77.5
Q ss_pred cCCceeEEeccccCCHHHHHHHHHHHHHcCCCE-EEEecCCCCCCCCCccccCCCccc-HHH-HHHHHHHHcCCceeEEE
Q 008423 46 ICVETMMHLTCTNMPVEKIDHALQTIKSNGIQN-VLALRGDPPHGQDKFVQIQGGFAC-ALD-LVKHIRSAYGDYFGITV 122 (566)
Q Consensus 46 ~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrN-ILaLrGDpp~~~~~~~~~~~~F~~-A~d-LVk~Ir~~~gd~F~IGV 122 (566)
-|+ .+.||...+.+..++...+..+.+.|+.. -|.+.++..-.... ...+ +.. ..+ .++.+|+.++ ...||+
T Consensus 26 ~g~-~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~--~~~g-vHl~~~~~~~~~~r~~~~-~~~ig~ 100 (201)
T PRK07695 26 SEV-DYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALLL--NIHR-VQLGYRSFSVRSVREKFP-YLHVGY 100 (201)
T ss_pred CCC-CEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHc--CCCE-EEeCcccCCHHHHHHhCC-CCEEEE
Confidence 365 67999999999999999999999988853 34455543211000 0111 111 112 2455666665 467888
Q ss_pred EecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHH-------HHHHHHHHHHcCCCCcEE--eee
Q 008423 123 AGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDM-------FLKFVNDCRQIGITCPIV--PGI 193 (566)
Q Consensus 123 AgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~-------f~~f~~~~R~~Gi~vPII--pGI 193 (566)
.+ |. ++.+++-.++||||++.=.+|+... -.++++.+.+ .+++||+ -||
T Consensus 101 s~----~s-----------------~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~-~~~ipvia~GGI 158 (201)
T PRK07695 101 SV----HS-----------------LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIAR-ALSIPVIAIGGI 158 (201)
T ss_pred eC----CC-----------------HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH-hCCCCEEEEcCC
Confidence 54 31 2224455579999997544443210 1123333332 2357764 455
Q ss_pred cccCCHHHHHHHhccCCCCCCHHHH
Q 008423 194 MPINNYKGFLRMTGFCKTKIPAEIT 218 (566)
Q Consensus 194 mPI~s~~~~~r~~~l~Gv~VP~~il 218 (566)
-..+...+.. +...|+.+-..+.
T Consensus 159 -~~~~~~~~~~-~Ga~gvav~s~i~ 181 (201)
T PRK07695 159 -TPENTRDVLA-AGVSGIAVMSGIF 181 (201)
T ss_pred -CHHHHHHHHH-cCCCEEEEEHHHh
Confidence 2344444432 3345555666665
No 203
>PRK06256 biotin synthase; Validated
Probab=56.75 E-value=1.5e+02 Score=31.12 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CCCCCCCCCccccCCCcccHHHHHHHHHHHc
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALR-GDPPHGQDKFVQIQGGFACALDLVKHIRSAY 114 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLr-GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~ 114 (566)
++.+++.+.+..+++.|++.+..+. |..|.. ..+++..++++.|++..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~--------~~~~~~~e~i~~i~~~~ 139 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSG--------KEVDQVVEAVKAIKEET 139 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc--------hHHHHHHHHHHHHHhcC
Confidence 5778888888889999998887665 443321 23556788899988753
No 204
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=56.64 E-value=1.3e+02 Score=30.71 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=65.9
Q ss_pred cCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCc
Q 008423 14 WPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF 93 (566)
Q Consensus 14 ~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~ 93 (566)
...+-|+++|-- -+...|++-|...-+++|.+++.-|.+ +.+.++-.++|+ ++|++-++.=||=-...
T Consensus 77 ~~aGAd~~tV~g----~A~~~TI~~~i~~A~~~~~~v~iDl~~-~~~~~~~~~~l~---~~gvd~~~~H~g~D~q~---- 144 (217)
T COG0269 77 FEAGADWVTVLG----AADDATIKKAIKVAKEYGKEVQIDLIG-VWDPEQRAKWLK---ELGVDQVILHRGRDAQA---- 144 (217)
T ss_pred HHcCCCEEEEEe----cCCHHHHHHHHHHHHHcCCeEEEEeec-CCCHHHHHHHHH---HhCCCEEEEEecccHhh----
Confidence 455667777653 235778888888888899999999988 445555555544 49999999988854321
Q ss_pred cccCCCcccHHHHHHHHHHHcCCceeEEEEe
Q 008423 94 VQIQGGFACALDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 94 ~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAg 124 (566)
.+-+.+.+.+..+++....-+.|.|||
T Consensus 145 ----~G~~~~~~~l~~ik~~~~~g~~vAVaG 171 (217)
T COG0269 145 ----AGKSWGEDDLEKIKKLSDLGAKVAVAG 171 (217)
T ss_pred ----cCCCccHHHHHHHHHhhccCceEEEec
Confidence 122235677777777665448888887
No 205
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.38 E-value=1e+02 Score=34.88 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc
Q 008423 63 KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~ 117 (566)
++.+.+..+.+.|++-|.+ |...+ .=....++|+.||++|++-
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~---D~a~~---------~~~~~~~~i~~ik~~~p~~ 269 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVV---DTAHG---------HQEKMLEALRAVRALDPGV 269 (479)
T ss_pred hHHHHHHHHHHhCCCEEEE---eccCC---------ccHHHHHHHHHHHHHCCCC
Confidence 4556666777889988654 43332 1124889999999999753
No 206
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.31 E-value=2.2e+02 Score=29.89 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
..+.+|| ++|+|.|+.= -..+....+++.+|+.|++.||+.
T Consensus 194 ~~v~~ik---~a~pD~v~~~--~~~~~~~~~~~~~~~~G~~~~~~~ 234 (357)
T cd06337 194 SQINAFK---REGVDIVTGF--AIPPDFATFWRQAAQAGFKPKIVT 234 (357)
T ss_pred HHHHHHH---hcCCCEEEeC--CCccHHHHHHHHHHHCCCCCCeEE
Confidence 4455554 5799998743 333346678999999999988865
No 207
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=55.93 E-value=1e+02 Score=31.33 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~ 140 (566)
.......+..+.+.|.++|..|..|.+.+ ......+.+.++ +.|-. .+....||.+. .+
T Consensus 121 ~~~~~~~~~~l~~~g~~~v~~l~~~~~~~----------~~~~~~~~~~~~-~~G~~-~~~~~~~~~~~---~d------ 179 (336)
T cd06326 121 ADEIAAIVRHLVTLGLKRIAVFYQDDAFG----------KDGLAGVEKALA-ARGLK-PVATASYERNT---AD------ 179 (336)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEecCcch----------HHHHHHHHHHHH-HcCCC-eEEEEeecCCc---cc------
Confidence 34555556666788999999996543211 111222333343 34422 23444555432 11
Q ss_pred ccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccC
Q 008423 141 NESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 141 ~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
....+.++++ .++|.|++-. +......+++.+++.|+++||+ ++....
T Consensus 180 ---~~~~~~~l~~---~~~dav~~~~--~~~~a~~~i~~~~~~G~~~~~~-~~~~~~ 227 (336)
T cd06326 180 ---VAAAVAQLAA---ARPQAVIMVG--AYKAAAAFIRALRKAGGGAQFY-NLSFVG 227 (336)
T ss_pred ---HHHHHHHHHh---cCCCEEEEEc--CcHHHHHHHHHHHhcCCCCcEE-EEeccC
Confidence 2245666654 4789887744 3335668899999999998865 344333
No 208
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=55.64 E-value=3.2e+02 Score=30.43 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=90.5
Q ss_pred hhccCCCcCEEE----ecCCCCCCCc---hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec
Q 008423 11 TAWWPTTRHSAT----SRWGAGGSTA---DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 11 ~~~~~~~p~fVs----VTwgagG~~~---~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
.+++.+..|||- +++.+-.... ....+....++++.|-.++.-++.++-. .++.+....+.++|..-+++-
T Consensus 157 y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~~a~~~G~~~~m~~- 234 (407)
T PRK09549 157 RDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGRT-FELKEKAKRAAEAGADALLFN- 234 (407)
T ss_pred HHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCH-HHHHHHHHHHHHcCCCeEEEe-
Confidence 456777777762 2222222211 3466777777888998887777766654 568888888999999776642
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCC-CCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTI-GPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~-~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
+ +....+.++.+++. . ++.+-+-++|.+|.-.. +++ ..-+...-+.+|-+= +|||.+
T Consensus 235 --~-------------~~~G~~al~~l~~~-~-~~~lpIhaHra~~ga~~r~~~---~Gis~~~~l~kl~RL--aGaD~~ 292 (407)
T PRK09549 235 --V-------------FAYGLDVLQSLAED-P-EIPVPIMAHPAVSGAYTPSPL---YGISSPLLLGKLLRY--AGADFS 292 (407)
T ss_pred --c-------------cccchHHHHHHHhc-C-CCCcEEEecCCcccccccCCC---CcCcHHHHHHHHHHH--cCCCcc
Confidence 1 11223346666653 2 34555678898885321 110 001111224444443 799988
Q ss_pred Ee-----ccCCCHHHHHHHHHHHHHc
Q 008423 163 IT-----QLFYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 163 IT-----QlffD~d~f~~f~~~~R~~ 183 (566)
++ -+-|+.+...++.+.||+-
T Consensus 293 ~~~~~~Gk~~~~~~~~~~~~~~~~~~ 318 (407)
T PRK09549 293 LFPSPYGSVALEKEEALAIAKELTED 318 (407)
T ss_pred ccCCCcCCcCCCHHHHHHHHHHHhcc
Confidence 77 4567889999999999974
No 209
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=55.63 E-value=2.8e+02 Score=29.81 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcC--CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-------------eccC
Q 008423 103 ALDLVKHIRSAYG--DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-------------TQLF 167 (566)
Q Consensus 103 A~dLVk~Ir~~~g--d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-------------TQlf 167 (566)
-.+|++.|++.++ ....+.+-++|+.- +. +.++.|++ +|.+.|- -.=.
T Consensus 78 l~~ll~~i~~~~~~~~~~e~t~e~~p~~i----~~----------e~l~~l~~---~G~~rvslGvQS~~~~~L~~l~R~ 140 (375)
T PRK05628 78 LARVLDAVRDTFGLAPGAEVTTEANPEST----SP----------EFFAALRA---AGFTRVSLGMQSAAPHVLAVLDRT 140 (375)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCC----CH----------HHHHHHHH---cCCCEEEEecccCCHHHHHHcCCC
Confidence 4566777777554 22345566666532 11 33444443 6876431 1223
Q ss_pred CCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHHH
Q 008423 168 YDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 168 fD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~r 204 (566)
++.+.+.+-++.++++|+. +-+|.|+ |=+|...+.+
T Consensus 141 ~s~~~~~~a~~~l~~~g~~~v~~dli~Gl-Pgqt~~~~~~ 179 (375)
T PRK05628 141 HTPGRAVAAAREARAAGFEHVNLDLIYGT-PGESDDDWRA 179 (375)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeccC-CCCCHHHHHH
Confidence 5667777788888888864 3356676 6777766543
No 210
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=55.20 E-value=2.2e+02 Score=28.20 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe-c-CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC-CCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLAL-R-GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG-HPDTIGPD 136 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaL-r-GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg-Hpe~~~~~ 136 (566)
+.+.....++.|.++|+.-|.+. + |+.. ....+....++++..+ .++-.+-|=+ |+.| |.... .
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~--------~~~~~~~i~~v~~~~~-~~g~~~iie~--~~~g~~~~~~-~- 140 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEE--------EREMLEELARVAAEAH-KYGLPLIAWM--YPRGPAVKNE-K- 140 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCch--------HHHHHHHHHHHHHHHH-HcCCCEEEEE--eccCCcccCc-c-
Confidence 34555566888999999877432 2 2211 0011112233333222 3564454422 2222 21110 0
Q ss_pred CCCCccchHHHHHH-HHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 137 GVASNESYQSDLLY-LKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 137 ~~~~~~~~~~dl~~-Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
+ ..++.+ .+.-.++|||||-|-+-=|.+.+.+.++. +.+||+.
T Consensus 141 ------~-~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~-----~~~pvv~ 184 (235)
T cd00958 141 ------D-PDLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG-----CPVPVVI 184 (235)
T ss_pred ------C-HHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc-----CCCCEEE
Confidence 1 145665 56677899999999432255555444332 3466643
No 211
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=54.94 E-value=1.5e+02 Score=37.52 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCC------CCCHHHHHH
Q 008423 147 DLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT------KIPAEITAA 220 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv------~VP~~il~~ 220 (566)
.++.+++-+ ++||+|+.=++|..+....+.+.++++--.++.+.+++ |...+++++++=+. +.+..++++
T Consensus 58 ~~~~~~~~i-~~ad~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~---s~~e~~~ltr~G~f~m~~~~~~~~~~~k~ 133 (1209)
T PRK13405 58 ALEACRADI-ATGDIVIATMLFMDEHIRAVLPALQARRDACDAMVGCM---SAGEVVKLTRMGKFDMSGPASGPLALLKK 133 (1209)
T ss_pred hHHHHHHHH-hhCCEEEeecccCHHHHHHHHHHHHHhhcCCCeEEEEc---CcHHHHHHhcccceeccCCcccchHHHHH
Confidence 466666666 79999999999999999888888887655677666655 44455555554333 345677777
Q ss_pred hCC
Q 008423 221 LEP 223 (566)
Q Consensus 221 Le~ 223 (566)
|.+
T Consensus 134 ~~~ 136 (1209)
T PRK13405 134 LRG 136 (1209)
T ss_pred hhh
Confidence 764
No 212
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.71 E-value=2.9e+02 Score=29.29 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEe
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAg 124 (566)
..++.+.+.+.+.++.++|+..|..-.|+|--. . .-.++++++++ .| +.+.+..
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~--------~---~~~~ii~~~~~-~g--~~~~l~T 88 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR--------P---DLVELVAHARR-LG--LYTNLIT 88 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc--------c---cHHHHHHHHHH-cC--CeEEEEe
Confidence 356888999999999999999988777777531 1 24688888875 34 3444443
No 213
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=54.55 E-value=2.1e+02 Score=27.69 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=20.2
Q ss_pred cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE
Q 008423 157 AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 157 AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII 190 (566)
++++.++..... .....+++.+++.|++++|+
T Consensus 189 ~~~~~vi~~~~~--~~~~~~~~~~~~~g~~~~~~ 220 (298)
T cd06268 189 AGPDAVFLAGYG--GDAALFLKQAREAGLKVPIV 220 (298)
T ss_pred cCCCEEEEcccc--chHHHHHHHHHHcCCCCcEE
Confidence 366777765432 44556777777777766654
No 214
>PRK14057 epimerase; Provisional
Probab=54.36 E-value=2.4e+02 Score=29.36 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=82.3
Q ss_pred HHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeE
Q 008423 41 RMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGI 120 (566)
Q Consensus 41 ~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~I 120 (566)
.++.-.++...|=+-|. +...|.+.|.++.+.|++.+-.=--| | ++ ...+....+.|+.||+... |.+
T Consensus 13 ~~~~~~~~~IspSil~a--D~~~L~~el~~l~~~g~d~lHiDVMD----G-~F---VPNitfGp~~i~~i~~~~p--~Dv 80 (254)
T PRK14057 13 CVALLASYPLSVGILAG--QWIALHRYLQQLEALNQPLLHLDLMD----G-QF---CPQFTVGPWAVGQLPQTFI--KDV 80 (254)
T ss_pred HHHHhcCCceEeehhhc--CHHHHHHHHHHHHHCCCCEEEEeccC----C-cc---CCccccCHHHHHHhccCCC--eeE
Confidence 33334567777777665 55778899999999999988743222 1 11 2345567888999975322 332
Q ss_pred EEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCC-----CcEEeeec-
Q 008423 121 TVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGIT-----CPIVPGIM- 194 (566)
Q Consensus 121 GVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~-----vPIIpGIm- 194 (566)
|--..++ ..++.+=++||||.|.=+.== ...+.+.++.+|+.|+. .++.+||.
T Consensus 81 --------HLMV~~P------------~~~i~~~~~aGad~It~H~Ea-~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAl 139 (254)
T PRK14057 81 --------HLMVADQ------------WTAAQACVKAGAHCITLQAEG-DIHLHHTLSWLGQQTVPVIGGEMPVIRGISL 139 (254)
T ss_pred --------EeeeCCH------------HHHHHHHHHhCCCEEEEeecc-ccCHHHHHHHHHHcCCCcccccccceeEEEE
Confidence 3222222 345666677999977644321 23467888999998852 34556765
Q ss_pred -ccCCHHHHHHHhc
Q 008423 195 -PINNYKGFLRMTG 207 (566)
Q Consensus 195 -PI~s~~~~~r~~~ 207 (566)
|-++...+..+..
T Consensus 140 nP~Tp~e~i~~~l~ 153 (254)
T PRK14057 140 CPATPLDVIIPILS 153 (254)
T ss_pred CCCCCHHHHHHHHH
Confidence 6677666665543
No 215
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=54.35 E-value=2.7e+02 Score=28.84 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=25.7
Q ss_pred HcCCcEEEeccCCCHHHHHHHHHHHHHcCC-CCcEEeee
Q 008423 156 DAGADLIITQLFYDTDMFLKFVNDCRQIGI-TCPIVPGI 193 (566)
Q Consensus 156 dAGAdFiITQlffD~d~f~~f~~~~R~~Gi-~vPIIpGI 193 (566)
++|+|.|+.-... .....|++.+++.|+ ++|++...
T Consensus 185 ~~~pd~v~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~ 221 (334)
T cd06356 185 AAKPDFVMSILVG--ANHLSFYRQWAAAGLGNIPMASST 221 (334)
T ss_pred hcCCCEEEEeccC--CcHHHHHHHHHHcCCccCceeeee
Confidence 3689998853322 234578999999999 78886544
No 216
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=54.20 E-value=1.6e+02 Score=26.09 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=57.2
Q ss_pred cccCCHHHHHHHHHHH-HHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTI-KSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIG 134 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a-~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~ 134 (566)
-+.++.+.+.+.+..+ .+.|++-|....|||... ..-..++..+++..+....|....++...
T Consensus 25 ~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----------~~~~~~~~~~~~~~~~~~~i~~~t~~~~~----- 88 (166)
T PF04055_consen 25 PREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----------PDFIELLELLRKIKKRGIRISINTNGTLL----- 88 (166)
T ss_dssp CEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----------CHHHHHHHHHHHCTCTTEEEEEEEESTTH-----
T ss_pred cccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----------hhHHHHHHHHHHhhccccceeeeccccch-----
Confidence 3455788999999999 588955555444444321 12345555555543334666666655432
Q ss_pred CCCCCCccchHHHHHHHHHHHHcCCcEEEecc--------------CCCHHHHHHHHHHHHHcCCC
Q 008423 135 PDGVASNESYQSDLLYLKKKVDAGADLIITQL--------------FYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl--------------ffD~d~f~~f~~~~R~~Gi~ 186 (566)
+.+.+++=.++|.+.+.--+ -.+.+.+.+-++.++++|+.
T Consensus 89 ------------~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 89 ------------DEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp ------------CHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE
T ss_pred ------------hHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC
Confidence 12333333445655442221 23445566677788888864
No 217
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=53.82 E-value=1.1e+02 Score=31.67 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=75.2
Q ss_pred CcCEEEecCCCCCCC-chhHHHHHHHHHhhcCCceeEE--eccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCc
Q 008423 17 TRHSATSRWGAGGST-ADLTLDIANRMQNTICVETMMH--LTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF 93 (566)
Q Consensus 17 ~p~fVsVTwgagG~~-~~~Sl~la~~lq~~~Gle~i~H--LTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~ 93 (566)
.+|||---||...-. ++.--+-....+ +.++.+-+- |+-.......+++.|..|+++|+.-|=+=.|-.|..-+
T Consensus 43 yVDfvKfgwGT~~Li~kd~V~ekid~y~-e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~e-- 119 (258)
T COG1809 43 YVDFVKFGWGTSSLIDKDQVKEKIDMYK-ENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTE-- 119 (258)
T ss_pred heeeeeecccccccccHHHHHHHHHHHH-HcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEecCCeeecchH--
Confidence 346654445433221 221222333334 478887764 44455588899999999999999999887777664211
Q ss_pred cccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 94 VQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 94 ~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
.-..||+...+ . |.-.+||--.... +..+.+++++-++++..-++|||+++|+
T Consensus 120 --------ek~~lIe~a~d-~------Gf~vlsEvGkk~~---e~~~~l~~~d~~k~i~~dvdaGa~~vi~ 172 (258)
T COG1809 120 --------EKCRLIERAVD-E------GFMVLSEVGKKDP---ESDSALSPDDRVKLINDDVDAGAEYVIA 172 (258)
T ss_pred --------HHHHHHHHHHh-c------ccEEehhhcccCc---chhhhcChHHHHHHHHHHHHcchHHhhh
Confidence 12344443322 1 2235565432211 1234567777788899999999998875
No 218
>PRK08417 dihydroorotase; Provisional
Probab=53.74 E-value=2.3e+02 Score=30.67 Aligned_cols=109 Identities=12% Similarity=0.136 Sum_probs=59.1
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHH-HHHHcCCceeEEEEecCC
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKH-IRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~-Ir~~~gd~F~IGVAgyPE 127 (566)
++=.|+.-...+.+.+++....|.+-||..|..+-...|.. .-..+.+..+. +++.....+..+.+..++
T Consensus 34 D~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (386)
T PRK08417 34 DLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAI---------DNEIALELINSAQRELPMQIFPSIRALDED 104 (386)
T ss_pred EEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCC---------CCHHHHHHHHHHhhccCCcEEEEEEEECCC
Confidence 33345533334568888999999999999999664321111 00012222211 111111122222222111
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcC
Q 008423 128 GHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIG 184 (566)
Q Consensus 128 gHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~G 184 (566)
..+..+.+-.++|+++|-+....+.+.+.+.++.+++.|
T Consensus 105 ------------------~~~~~i~~l~~~Gv~~~k~~~~~~~~~l~~~~~~a~~~g 143 (386)
T PRK08417 105 ------------------GKLSNIATLLKKGAKALELSSDLDANLLKVIAQYAKMLD 143 (386)
T ss_pred ------------------ccHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 113333443578999877655678888888888888777
No 219
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=53.49 E-value=2.4e+02 Score=30.60 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
++.+++.+.+..+.+.|++.|-.-+|.|--. ..-.++|+++++..|. ..|.+. -+|..
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----------~dl~eli~~l~~~~gi-~~i~it--TNG~l-------- 147 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----------KDIEDICLQLSSLKGL-KTLAMT--TNGIT-------- 147 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----------hhHHHHHHHHHhcCCC-ceEEEe--eCcch--------
Confidence 6778999998888999999988666665321 1256788888764342 123333 34431
Q ss_pred CCccchHHHHHHHHHHHHcCCcEE-EeccCCCHHHHH
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLI-ITQLFYDTDMFL 174 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlffD~d~f~ 174 (566)
.-+.+++-.++|.+.+ |+-=-.+.+.|.
T Consensus 148 --------L~~~~~~L~~aGld~VnISLDsl~~e~~~ 176 (373)
T PLN02951 148 --------LSRKLPRLKEAGLTSLNISLDTLVPAKFE 176 (373)
T ss_pred --------HHHHHHHHHhCCCCeEEEeeccCCHHHHH
Confidence 1122334446888754 554445555543
No 220
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=53.49 E-value=1.7e+02 Score=37.03 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC--------CCHHH
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK--------IPAEI 217 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~--------VP~~i 217 (566)
..++.+++-+ ++||+|+.=++|+.+.....++.++++--.++++.+++ |...+++++++=+.. .+..+
T Consensus 45 ~~~~~~~~~i-~~ad~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~---s~~e~~~ltr~G~f~m~~~~~~~~~~~~ 120 (1216)
T TIGR02025 45 EKRLEFEQAI-QEADLFFGSMLFDEDQVDWLREVLSQIRNQEDTVVVFE---SMPELMKLTKLGSFAMGKPAEKSGMPKP 120 (1216)
T ss_pred hhHHHHHHHH-hhCCEEEeecccCHHHHHHHHHHHHhhccCCCeEEEec---ChHHHHHhhcccceecccCCCcccchHH
Confidence 3466676666 79999999999999999999998887654566655543 444555555543333 34566
Q ss_pred HHHhCC
Q 008423 218 TAALEP 223 (566)
Q Consensus 218 l~~Le~ 223 (566)
++++.+
T Consensus 121 ~k~~~~ 126 (1216)
T TIGR02025 121 VKKIAD 126 (1216)
T ss_pred HHHHhh
Confidence 677665
No 221
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=53.48 E-value=2.5e+02 Score=30.89 Aligned_cols=118 Identities=13% Similarity=0.207 Sum_probs=72.4
Q ss_pred eeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEE---EEecC
Q 008423 50 TMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGIT---VAGYP 126 (566)
Q Consensus 50 ~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IG---VAgyP 126 (566)
+-+.+.....+.++..+.++.+.+.||+-|=+ |- | .......+.|+.|++.++..+-+. .+..|
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~--g~-p----------~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g 70 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEA--GT-P----------LIKSEGMNAIRTLRKNFPDHTIVADMKTMDTG 70 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEe--CC-H----------HHHHhhHHHHHHHHHHCCCCEEEEEeeeccch
Confidence 34556666678888888888888899987732 21 1 112235667888887776433221 11112
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCC-HHHHH
Q 008423 127 EGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINN-YKGFL 203 (566)
Q Consensus 127 EgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s-~~~~~ 203 (566)
+ . +++.=+++|||++++...-+...+.++++.+++.| +++++|++...+ ...++
T Consensus 71 ~------------------~---~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G--~~~~~g~~s~~t~~e~~~ 125 (430)
T PRK07028 71 A------------------I---EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYG--VRLMADLINVPDPVKRAV 125 (430)
T ss_pred H------------------H---HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcC--CEEEEEecCCCCHHHHHH
Confidence 1 2 34444679999998764434445677888999887 567888665543 34333
No 222
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=53.32 E-value=2.2e+02 Score=29.11 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+...|.+.|+.+.. |++.+-+=--| | ++ ...+....+.|+.||+...-.|.+-... .++
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMD----G-~F---VPN~tfg~~~i~~ir~~t~~~~DvHLMv--------~~P---- 71 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMD----G-HF---VPNLTLSPFFVSQVKKLASKPLDVHLMV--------TDP---- 71 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEeccc----C-cc---CCCcccCHHHHHHHHhcCCCCeEEEEEe--------cCH----
Confidence 55778888888877 88887742222 1 11 1345567888999997433224333222 122
Q ss_pred CccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeec--ccCCHHHHHHHh
Q 008423 140 SNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIM--PINNYKGFLRMT 206 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm--PI~s~~~~~r~~ 206 (566)
..++.+=++||||+|.-..==..+...+.++.+|+.|+. +||. |-+....+..+.
T Consensus 72 --------~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~k----aGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 72 --------QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMK----VGLVLNPETPVESIKYYI 128 (229)
T ss_pred --------HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCC----EEEEeCCCCCHHHHHHHH
Confidence 345666678999988766431113467889999999965 4443 556665555443
No 223
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.13 E-value=92 Score=33.85 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=58.6
Q ss_pred cccCCHHHHHHHHH-------HHHHcCCCEEEEecCC---------CCCC--CCCcc-ccCCCcccHHHHHHHHHHHcCC
Q 008423 56 CTNMPVEKIDHALQ-------TIKSNGIQNVLALRGD---------PPHG--QDKFV-QIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 56 Crd~n~~~L~~~L~-------~a~~~GIrNILaLrGD---------pp~~--~~~~~-~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
++.|++++|++.++ .|+++|.+-|=+=.|- |... .+.|- ...+......++|+.||+..|+
T Consensus 131 p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~ 210 (361)
T cd04747 131 GREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGP 210 (361)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 46677777766554 3467899999755555 2211 11110 1122344578899999999998
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCcEE
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGADLI 162 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFi 162 (566)
+|.||+--.|+...+..... ..++ .|..++.+.+ ++|+|||
T Consensus 211 d~~v~vRis~~~~~~~~~~~----g~~~-~e~~~~~~~l~~~gvd~i 252 (361)
T cd04747 211 DFPIILRFSQWKQQDYTARL----ADTP-DELEALLAPLVDAGVDIF 252 (361)
T ss_pred CCeEEEEECcccccccccCC----CCCH-HHHHHHHHHHHHcCCCEE
Confidence 89999987774311100000 0122 3454554444 5799987
No 224
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=52.75 E-value=2.2e+02 Score=27.47 Aligned_cols=139 Identities=12% Similarity=0.173 Sum_probs=83.5
Q ss_pred chhhccC-CCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 9 GWTAWWP-TTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 9 ~~~~~~~-~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
.|+.+.. ..+..++|-.|.|. .++.++.. .+-.++++.+.+...+..+...+...|+.||-++.||..
T Consensus 8 ~~~~~f~~~~~~ilDiGcG~G~----~~~~la~~-------~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~ 76 (194)
T TIGR00091 8 DFATVFGNKAPLHLEIGCGKGR----FLIDMAKQ-------NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDAN 76 (194)
T ss_pred CHHHHhCCCCceEEEeCCCccH----HHHHHHHh-------CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHH
Confidence 3444443 55667766665543 24444432 133478999999999999999999999999999988863
Q ss_pred CCCCCccccCCCcccHHHHHHHHHHHcC-CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc
Q 008423 88 HGQDKFVQIQGGFACALDLVKHIRSAYG-DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL 166 (566)
Q Consensus 88 ~~~~~~~~~~~~F~~A~dLVk~Ir~~~g-d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl 166 (566)
. +. ...+. ..|..-+..+|.-++...... .-...+.-++.+.+.++.|..++++.
T Consensus 77 ~-----------------~~---~~~~~~~~~d~v~~~~pdpw~k~~h~~---~r~~~~~~l~~~~r~LkpgG~l~~~t- 132 (194)
T TIGR00091 77 E-----------------LL---DKFFPDGSLSKVFLNFPDPWPKKRHNK---RRITQPHFLKEYANVLKKGGVIHFKT- 132 (194)
T ss_pred H-----------------HH---HhhCCCCceeEEEEECCCcCCCCCccc---cccCCHHHHHHHHHHhCCCCEEEEEe-
Confidence 2 11 11121 136666677776654421100 00001245777888889999887654
Q ss_pred CCCHHH-HHHHHHHHHHcC
Q 008423 167 FYDTDM-FLKFVNDCRQIG 184 (566)
Q Consensus 167 ffD~d~-f~~f~~~~R~~G 184 (566)
|.+. +..+++.+.+.+
T Consensus 133 --d~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 133 --DNEPLFEDMLKVLSEND 149 (194)
T ss_pred --CCHHHHHHHHHHHHhCC
Confidence 4444 455566776655
No 225
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=52.69 E-value=2.6e+02 Score=28.62 Aligned_cols=83 Identities=11% Similarity=-0.084 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHhhcCCceeEEecc-ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-cCCCcccHHHHHHH
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTC-TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ-IQGGFACALDLVKH 109 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTC-rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~-~~~~F~~A~dLVk~ 109 (566)
.+..++.+..+++ .|+.++.|+.. -+-+.+++.+.+..+.++|+..|-+-.=-|..+ ..... ....-....+.|..
T Consensus 157 ~~~~~~ai~~l~~-~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~g-T~l~~~~~~s~~~~~~~ia~ 234 (296)
T TIGR00433 157 YDDRVDTLENAKK-AGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIKG-TPLADNKELSADDALKTIAL 234 (296)
T ss_pred HHHHHHHHHHHHH-cCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCC-CccCCCCCCCHHHHHHHHHH
Confidence 3456677777775 69998888654 344778888888888888887663332222221 11100 11122235666767
Q ss_pred HHHHcCC
Q 008423 110 IRSAYGD 116 (566)
Q Consensus 110 Ir~~~gd 116 (566)
.|...+.
T Consensus 235 ~r~~lp~ 241 (296)
T TIGR00433 235 ARIIMPK 241 (296)
T ss_pred HHHHCCc
Confidence 7766653
No 226
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=52.53 E-value=63 Score=35.93 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=75.1
Q ss_pred CCceeEEecc--ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC-CceeEEEE
Q 008423 47 CVETMMHLTC--TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG-DYFGITVA 123 (566)
Q Consensus 47 Gle~i~HLTC--rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g-d~F~IGVA 123 (566)
.+..+++... |.++.+.+.+.+..+.+.|++.|..+..|...-++. ... ..-.+|++.|.+..+ ..+.++.
T Consensus 164 sFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~----~~~-~~l~~Ll~~l~~~~~~~rir~~~- 237 (445)
T PRK14340 164 AFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDP----EAG-ADFAGLLDAVSRAAPEMRIRFTT- 237 (445)
T ss_pred CCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhcc----CCC-chHHHHHHHHhhcCCCcEEEEcc-
Confidence 3444444332 444678888999999899999999776665432221 000 123566666654222 1233333
Q ss_pred ecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE-----------Eecc--CCCHHHHHHHHHHHHHc--CCC--
Q 008423 124 GYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI-----------ITQL--FYDTDMFLKFVNDCRQI--GIT-- 186 (566)
Q Consensus 124 gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-----------ITQl--ffD~d~f~~f~~~~R~~--Gi~-- 186 (566)
.+|..- +. +.++.|+ +..+|+.++ ..+| -|+.+.+.+.++.+|++ |+.
T Consensus 238 ~~p~~l----~~----------ell~~~~-~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~ 302 (445)
T PRK14340 238 SHPKDI----SE----------SLVRTIA-ARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLS 302 (445)
T ss_pred CChhhc----CH----------HHHHHHH-hCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEe
Confidence 344321 11 3344443 333355433 3333 47888999999999988 764
Q ss_pred CcEEeeecccCCHHHHH
Q 008423 187 CPIVPGIMPINNYKGFL 203 (566)
Q Consensus 187 vPIIpGImPI~s~~~~~ 203 (566)
.-+|.|+ |=.|...|.
T Consensus 303 td~IvGf-PgET~edf~ 318 (445)
T PRK14340 303 TDLIAGF-CGETEEDHR 318 (445)
T ss_pred ccEEEEC-CCCCHHHHH
Confidence 3467776 445555443
No 227
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.44 E-value=2e+02 Score=29.96 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhc--CCceeEEecccc-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHH
Q 008423 35 TLDIANRMQNTI--CVETMMHLTCTN-----MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 107 (566)
Q Consensus 35 Sl~la~~lq~~~--Gle~i~HLTCrd-----~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLV 107 (566)
.+++...+++.+ ++++..-+++.+ .+.++..+.+..+.+.|+.-|-+-.|+.........+....-....+++
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELA 273 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHH
Confidence 478888888877 456666677543 4667788888888999998888777765322110000000112356778
Q ss_pred HHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHc-CCcEE--EeccCCCHHHHHHH
Q 008423 108 KHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDA-GADLI--ITQLFYDTDMFLKF 176 (566)
Q Consensus 108 k~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdA-GAdFi--ITQlffD~d~f~~f 176 (566)
+.||+..+. -|.++| +. ...+..++-+++ |||+| -+.++-|++-..++
T Consensus 274 ~~ir~~~~i--PVi~~G---gi----------------~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 274 EKIKKAVKI--PVIAVG---GI----------------RDPEVAEEILAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred HHHHHHCCC--CEEEeC---CC----------------CCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHH
Confidence 888887642 232322 11 012334555666 78974 45666677665544
No 228
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=52.26 E-value=2.9e+02 Score=28.54 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC--CCccccCCCcccHHHHHHHHHHHcCCcee
Q 008423 42 MQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQ--DKFVQIQGGFACALDLVKHIRSAYGDYFG 119 (566)
Q Consensus 42 lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~--~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~ 119 (566)
.++..+.+++..+.+. +.+.+......+.++|++-|=+=-+-|.... ..+ -...+...++|+.+|+..+ +-
T Consensus 84 ~~~~~~~p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~---~~~~~~~~eiv~~vr~~~~--~P 156 (296)
T cd04740 84 WLREFGTPVIASIAGS--TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAF---GTDPEAVAEIVKAVKKATD--VP 156 (296)
T ss_pred HhhcCCCcEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccc---cCCHHHHHHHHHHHHhccC--CC
Confidence 3334578889999875 4677788888888889987754344443211 111 1223457788888887653 44
Q ss_pred EEEEecC
Q 008423 120 ITVAGYP 126 (566)
Q Consensus 120 IGVAgyP 126 (566)
|.|=..|
T Consensus 157 v~vKl~~ 163 (296)
T cd04740 157 VIVKLTP 163 (296)
T ss_pred EEEEeCC
Confidence 5544334
No 229
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=52.02 E-value=2e+02 Score=29.94 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHH-HHHHHHHHcCCceeE-EEEecCCCCCCCCCCCCCCCc
Q 008423 64 IDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALD-LVKHIRSAYGDYFGI-TVAGYPEGHPDTIGPDGVASN 141 (566)
Q Consensus 64 L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~d-LVk~Ir~~~gd~F~I-GVAgyPEgHpe~~~~~~~~~~ 141 (566)
....+..+++.|.+.|-+|.-|.+-+. ...+ +.+.++ +.| .+| +...+|.+.. |
T Consensus 126 ~~~~~~~~~~~~~~~v~il~~d~~~g~-----------~~~~~~~~~l~-~~G--~~vv~~~~~~~~~~---D------- 181 (347)
T cd06336 126 GVPFLAYAKKPGGKKVALLGPNDAYGQ-----------PWVAAYKAAWE-AAG--GKVVSEEPYDPGTT---D------- 181 (347)
T ss_pred HHHHHHHHhhcCCceEEEEccCCchhH-----------HHHHHHHHHHH-HcC--CEEeeecccCCCCc---c-------
Confidence 333444444579999999976644210 1122 222333 344 333 4445554421 1
Q ss_pred cchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 142 ESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 142 ~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
+...+.+++ ++|+|.|+...... +....+++.+++.|++.+++.
T Consensus 182 --~s~~i~~i~---~~~~d~v~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 225 (347)
T cd06336 182 --FSPIVTKLL---AEKPDVIFLGGPSP-APAALVIKQARELGFKGGFLS 225 (347)
T ss_pred --hHHHHHHHH---hcCCCEEEEcCCCc-hHHHHHHHHHHHcCCCccEEe
Confidence 224455554 48999987555543 257889999999999887654
No 230
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=51.58 E-value=89 Score=30.66 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=37.8
Q ss_pred eeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCC
Q 008423 50 TMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 50 ~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPE 127 (566)
.=.|+.+...+. .+++.+..+.++|++.+++++-|+ . ..+.+..+.++++ .+..++..+|.
T Consensus 4 ~H~Hl~~~~~~~-~~~~~~~~~~~~Gv~~~v~~~~~~-~--------------~~~~~~~~~~~~~-~i~~~~GihP~ 64 (252)
T TIGR00010 4 AHCHLDFLDFEE-DVEEVIERAKAAGVTAVVAVGTDL-E--------------DFLRALELAEKYP-NVYAAVGVHPL 64 (252)
T ss_pred eccCCCChhhcc-CHHHHHHHHHHcCCCEEEEecCCH-H--------------HHHHHHHHHHHCC-CEEEEEEeCcc
Confidence 335776544321 466777888899999999886553 1 1222333344677 67777777773
No 231
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=51.42 E-value=1.2e+02 Score=30.86 Aligned_cols=145 Identities=12% Similarity=0.099 Sum_probs=80.0
Q ss_pred cchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcC-CceeEEeccccC------------------CHHHHHHHH
Q 008423 8 SGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTIC-VETMMHLTCTNM------------------PVEKIDHAL 68 (566)
Q Consensus 8 ~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~G-le~i~HLTCrd~------------------n~~~L~~~L 68 (566)
+...+++....+.|.|- +......++...+.+.+| =.++..+-+++- +...+.+.+
T Consensus 87 ~d~~~~~~~Ga~~vivg-----t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~ 161 (254)
T TIGR00735 87 EDVDKLLRAGADKVSIN-----TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWA 161 (254)
T ss_pred HHHHHHHHcCCCEEEEC-----hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHH
Confidence 34445555556665442 222234556666666677 456777776532 234566777
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHH
Q 008423 69 QTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDL 148 (566)
Q Consensus 69 ~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl 148 (566)
..+.++|+..|++-. -.+.+. .++++ .++++.+++..+- --|++.+.- +. +++
T Consensus 162 ~~l~~~G~~~iivt~--i~~~g~-----~~g~~--~~~~~~i~~~~~i-pvia~GGi~-------s~----------~di 214 (254)
T TIGR00735 162 KEVEKLGAGEILLTS--MDKDGT-----KSGYD--LELTKAVSEAVKI-PVIASGGAG-------KP----------EHF 214 (254)
T ss_pred HHHHHcCCCEEEEeC--cCcccC-----CCCCC--HHHHHHHHHhCCC-CEEEeCCCC-------CH----------HHH
Confidence 888999999998742 122221 23333 5677777765431 122222211 11 345
Q ss_pred HHHHHHHHcC-CcE-EEeccCCC-HHHHHHHHHHHHHcCCCC
Q 008423 149 LYLKKKVDAG-ADL-IITQLFYD-TDMFLKFVNDCRQIGITC 187 (566)
Q Consensus 149 ~~Lk~KvdAG-AdF-iITQlffD-~d~f~~f~~~~R~~Gi~v 187 (566)
..+.+ .| |+. ++.-.+|+ .-.+.+..+.|++.||.+
T Consensus 215 ~~~~~---~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 215 YEAFT---KGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHH---cCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 54433 36 987 56566664 234556677888888653
No 232
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=51.17 E-value=3.6e+02 Score=29.34 Aligned_cols=180 Identities=11% Similarity=0.067 Sum_probs=106.7
Q ss_pred cccchhhccCCCcCEEEecCCC--------CCCCchhHHH----HHHHHHhhcCCceeEEecc----cc---CCHHHHHH
Q 008423 6 CSSGWTAWWPTTRHSATSRWGA--------GGSTADLTLD----IANRMQNTICVETMMHLTC----TN---MPVEKIDH 66 (566)
Q Consensus 6 ~~~~~~~~~~~~p~fVsVTwga--------gG~~~~~Sl~----la~~lq~~~Gle~i~HLTC----rd---~n~~~L~~ 66 (566)
..+|.++.+....+.|.+--.. -+.+...+++ ++..+++ .|+++..++++ -+ .+.+.+.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~-~Gl~v~~~is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKK-HSIPVRGYVSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEEeeecCCccCCCCHHHHHH
Confidence 4566777777777776665322 2234444554 5555554 79999766654 22 26788888
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHH
Q 008423 67 ALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQS 146 (566)
Q Consensus 67 ~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~ 146 (566)
..+.+.++|++.|- | .|..... .-....+||+.+++.++. -.|++-+ |- +.. .
T Consensus 202 ~~~~~~~~Gad~I~-l-~DT~G~a--------~P~~v~~lv~~l~~~~~~-~~i~~H~----Hn---d~G---------l 254 (347)
T PLN02746 202 VAKELYDMGCYEIS-L-GDTIGVG--------TPGTVVPMLEAVMAVVPV-DKLAVHF----HD---TYG---------Q 254 (347)
T ss_pred HHHHHHHcCCCEEE-e-cCCcCCc--------CHHHHHHHHHHHHHhCCC-CeEEEEE----CC---CCC---------h
Confidence 88999999998765 3 3432111 111378899999987763 2355533 31 221 3
Q ss_pred HHHHHHHHHHcCCcEEEeccCC-----------CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHH----HHHhccCCC
Q 008423 147 DLLYLKKKVDAGADLIITQLFY-----------DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF----LRMTGFCKT 211 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQlff-----------D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~----~r~~~l~Gv 211 (566)
-+.....=++|||+.|=|=+.- -.-.+++.+-.++..|++. || +...+ ..+.+..|.
T Consensus 255 A~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~t----gi----Dl~~L~~~s~~v~~~~g~ 326 (347)
T PLN02746 255 ALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVST----NV----DLGKLMAAGDFISKHLGR 326 (347)
T ss_pred HHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCC----CC----CHHHHHHHHHHHHHHhCC
Confidence 3666667789999988665441 2234555666666666543 22 22222 223457788
Q ss_pred CCCHHHHHHh
Q 008423 212 KIPAEITAAL 221 (566)
Q Consensus 212 ~VP~~il~~L 221 (566)
.+|...++.+
T Consensus 327 ~~~~~~~~~~ 336 (347)
T PLN02746 327 PSGSKTAVAL 336 (347)
T ss_pred CChHHHHHHH
Confidence 8888776553
No 233
>PRK06267 hypothetical protein; Provisional
Probab=51.08 E-value=72 Score=34.28 Aligned_cols=28 Identities=21% Similarity=0.046 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
++.++|.+.++.+.+.|++.+++..|.+
T Consensus 63 ~s~eeI~eea~~~~~~Gv~~~~lsgG~~ 90 (350)
T PRK06267 63 RRVESILAEAILMKRIGWKLEFISGGYG 90 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 3778888888888999999888777765
No 234
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=50.70 E-value=1.2e+02 Score=32.04 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=53.1
Q ss_pred CCCCCchhHHHHHHHHHhhcCCceeEEecccc------CCHHHHHHHHHHHHH------------------cCCCEEEEe
Q 008423 27 AGGSTADLTLDIANRMQNTICVETMMHLTCTN------MPVEKIDHALQTIKS------------------NGIQNVLAL 82 (566)
Q Consensus 27 agG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd------~n~~~L~~~L~~a~~------------------~GIrNILaL 82 (566)
++|.....-+...+.+-+.+|. ..+|+|.+. .+.+.+.+.+..+.+ .+++||.+-
T Consensus 28 p~G~lt~~qlr~la~ia~~yg~-g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~~~~~~G~~g~~vR~i~aC 106 (314)
T TIGR02912 28 PGGILPAKYLSVLQNIAETYGN-GKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQEDVQKGYSASGTRNITAC 106 (314)
T ss_pred cceecCHHHHHHHHHHHHHhCC-CeEEEecccceEecCcCHHHHHHHHHHHHHHhhcccccccccccccccCCccceeeC
Confidence 6666554455444444445774 469999986 556666555444332 345666655
Q ss_pred cCCCCCCCCCccccCCCcccHHHHHHHHHHHc---CCceeEEEEecCCC
Q 008423 83 RGDPPHGQDKFVQIQGGFACALDLVKHIRSAY---GDYFGITVAGYPEG 128 (566)
Q Consensus 83 rGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~---gd~F~IGVAgyPEg 128 (566)
.|...-. .+.+ .+.+|.+.|.+.+ +..|.|++++-|..
T Consensus 107 ~g~~~C~-------~~~~-dt~~l~~~l~~~~~~~~~k~ki~iSGCp~~ 147 (314)
T TIGR02912 107 IGNRVCP-------FANY-DTTKFAKRIEKAVFPNDYHVKIALTGCPND 147 (314)
T ss_pred CCCCCCC-------CCcc-cHHHHHHHHHHHhhcCCceEEEEEeCCCch
Confidence 5533211 1122 3666666665543 23599999999965
No 235
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=50.55 E-value=99 Score=34.77 Aligned_cols=92 Identities=21% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHc-CCceeEEEEecCCCCCCCCCCCCCCCccch
Q 008423 66 HALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAY-GDYFGITVAGYPEGHPDTIGPDGVASNESY 144 (566)
Q Consensus 66 ~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~-gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~ 144 (566)
+.+..+.++|++ ++++......... ..++++.||+++ +-.+.+|-..-+
T Consensus 231 e~a~~L~~agvd-vivvD~a~g~~~~-----------vl~~i~~i~~~~p~~~vi~g~v~t~------------------ 280 (486)
T PRK05567 231 ERAEALVEAGVD-VLVVDTAHGHSEG-----------VLDRVREIKAKYPDVQIIAGNVATA------------------ 280 (486)
T ss_pred HHHHHHHHhCCC-EEEEECCCCcchh-----------HHHHHHHHHhhCCCCCEEEeccCCH------------------
Q ss_pred HHHHHHHHHHHHcCCcEE----------EeccCCC-----HHHHHHHHHHHHHcCCCCcEEe--ee
Q 008423 145 QSDLLYLKKKVDAGADLI----------ITQLFYD-----TDMFLKFVNDCRQIGITCPIVP--GI 193 (566)
Q Consensus 145 ~~dl~~Lk~KvdAGAdFi----------ITQlffD-----~d~f~~f~~~~R~~Gi~vPIIp--GI 193 (566)
++..+|. +||||+| .||.+-+ .+.+.+-.+.+++.| +|||+ ||
T Consensus 281 -e~a~~l~---~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~--~~viadGGi 340 (486)
T PRK05567 281 -EAARALI---EAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYG--IPVIADGGI 340 (486)
T ss_pred -HHHHHHH---HcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCC--CeEEEcCCC
No 236
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=50.51 E-value=3.4e+02 Score=28.85 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCc-ccHHHHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGF-ACALDLVKHIR 111 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F-~~A~dLVk~Ir 111 (566)
+.-++....+++..+.+++..+.+. +.++..+....+.++|+.-|-+=-+=||..... ..... +...++|+.++
T Consensus 87 d~~~~~i~~~~~~~~~pvi~sI~g~--~~~e~~~~a~~~~~agad~ielN~scpp~~~~~---~g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 87 EEYLELIRRAKEAVDIPVIASLNGS--SAGGWVDYARQIEQAGADALELNIYYLPTDPDI---SGAEVEQRYLDILRAVK 161 (334)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC---ccccHHHHHHHHHHHHH
Confidence 3445555566656678899999773 566777777888888987665422222321110 00111 12567888888
Q ss_pred HHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCcEEEe-----ccCCCHHH-------------
Q 008423 112 SAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGADLIIT-----QLFYDTDM------------- 172 (566)
Q Consensus 112 ~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFiIT-----QlffD~d~------------- 172 (566)
+... .-|.|=-.|.- .++..+.+.+ ++|||.|+. ++-.|.+.
T Consensus 162 ~~~~--iPV~vKl~p~~-----------------~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~ 222 (334)
T PRK07565 162 SAVS--IPVAVKLSPYF-----------------SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPA 222 (334)
T ss_pred hccC--CcEEEEeCCCc-----------------hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCch
Confidence 7543 23333333311 1233333332 589998743 33334322
Q ss_pred ----HHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 173 ----FLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 173 ----f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
..+++.+++++- .+||| |.=.|.|...+..+.
T Consensus 223 ~~~~al~~v~~~~~~~-~ipIi-g~GGI~s~~Da~e~l 258 (334)
T PRK07565 223 ELRLPLRWIAILSGRV-GADLA-ATTGVHDAEDVIKML 258 (334)
T ss_pred hhhHHHHHHHHHHhhc-CCCEE-EECCCCCHHHHHHHH
Confidence 235555555432 56754 455566666655544
No 237
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=50.45 E-value=2.3e+02 Score=31.65 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce-eEEEEec-----CCCCCCC
Q 008423 60 PVEKIDHALQTIKS-NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF-GITVAGY-----PEGHPDT 132 (566)
Q Consensus 60 n~~~L~~~L~~a~~-~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F-~IGVAgy-----PEgHpe~ 132 (566)
+.+++++.+...++ .+|+.|++-+|||-.-.+ ..-..+++.+++. + +. .|.+... |..-.
T Consensus 139 s~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---------~~L~~iL~~L~~I-p-hV~~IRI~TR~pvv~P~RIT-- 205 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---------DYLDWILTELRAI-P-HVEVIRIGTRVPVVLPQRIT-- 205 (417)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---------HHHHHHHHHHhhc-C-CCceEEEeeccccccccccC--
Confidence 56788888887776 599999999999864321 0112235566552 2 12 2333333 33221
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHH---HHHHHHHcCC
Q 008423 133 IGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLK---FVNDCRQIGI 185 (566)
Q Consensus 133 ~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~---f~~~~R~~Gi 185 (566)
.++..+.+| .+..+++|++=-..+.+.+ =+++++++||
T Consensus 206 -------------~ell~~Lk~--~~~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI 246 (417)
T TIGR03820 206 -------------DELVAILKK--HHPVWLNTHFNHPREITASSKKALAKLADAGI 246 (417)
T ss_pred -------------HHHHHHHHh--cCCeEEEEeCCChHhChHHHHHHHHHHHHcCC
Confidence 233333344 3678888988776665544 4455556774
No 238
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=50.43 E-value=91 Score=34.55 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCC-CCCCCccccC----CC--cccHHHHHHHHHHHcCCceeEEEE-ecCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPP-HGQDKFVQIQ----GG--FACALDLVKHIRSAYGDYFGITVA-GYPEG 128 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp-~~~~~~~~~~----~~--F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEg 128 (566)
|.++.+.+.+.+..+.+.|++.|..+ ||.. ..+....... +. -.+..+|++.|.+. +. .+.+. .+|.+
T Consensus 166 rsr~~e~Vv~Ei~~l~~~g~kei~l~-~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~-~~--~~r~~~~~p~~ 241 (440)
T PRK14862 166 VSRPIGDVLREAERLVKAGVKELLVI-SQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL-GA--WVRLHYVYPYP 241 (440)
T ss_pred cccCHHHHHHHHHHHHHCCCceEEEE-ecChhhhccccccccccccccchhhHHHHHHHHHHhc-CC--EEEEecCCCCc
Confidence 45577888899998888999998855 4432 1110000000 00 13578888888764 43 23332 46654
Q ss_pred C
Q 008423 129 H 129 (566)
Q Consensus 129 H 129 (566)
+
T Consensus 242 ~ 242 (440)
T PRK14862 242 H 242 (440)
T ss_pred C
Confidence 3
No 239
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=50.29 E-value=3.1e+02 Score=28.91 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEee
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
..+.+++ ++|+|.|+.-.... ....|++.+++.|.+.+|+.+
T Consensus 186 ~~v~~i~---~~~pd~V~~~~~~~--~~~~~~~~~~~~G~~~~~~~~ 227 (351)
T cd06334 186 AQWLQIR---RSGPDYVILWGWGV--MNPVAIKEAKRVGLDDKFIGN 227 (351)
T ss_pred HHHHHHH---HcCCCEEEEecccc--hHHHHHHHHHHcCCCceEEEe
Confidence 4455543 47999998765554 456789999999998776643
No 240
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=50.27 E-value=2.5e+02 Score=31.37 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=56.4
Q ss_pred CCchhHHHHHHHHHhhcCCceeEEecc---------ccCCHHHHHHHHHH-HHHcCCCE-EEEecCCCCCCCCCccc--c
Q 008423 30 STADLTLDIANRMQNTICVETMMHLTC---------TNMPVEKIDHALQT-IKSNGIQN-VLALRGDPPHGQDKFVQ--I 96 (566)
Q Consensus 30 ~~~~~Sl~la~~lq~~~Gle~i~HLTC---------rd~n~~~L~~~L~~-a~~~GIrN-ILaLrGDpp~~~~~~~~--~ 96 (566)
+.+..-++.|-..-++.+.+++.--|| ++|+...+.+.+.+ |.+.|+.+ -++|.||.-.. ..|+. .
T Consensus 20 sahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGP-n~Wq~lpa 98 (420)
T TIGR02810 20 SAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGP-NPWQHLPA 98 (420)
T ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCC-ccccCCCH
Confidence 445556676666666789999999999 67899999999876 58999997 88899998543 23642 1
Q ss_pred CCCcccHHHHHH-HHHHHc
Q 008423 97 QGGFACALDLVK-HIRSAY 114 (566)
Q Consensus 97 ~~~F~~A~dLVk-~Ir~~~ 114 (566)
..-...|.+||+ +++..|
T Consensus 99 ~eAM~~A~~li~ayV~AGF 117 (420)
T TIGR02810 99 DEAMAKAAALVDAYVEAGF 117 (420)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 112333555553 354434
No 241
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=50.01 E-value=3.8e+02 Score=29.29 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=84.0
Q ss_pred hhhccCCCcCEEEecCC----CCCCCch---hHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe
Q 008423 10 WTAWWPTTRHSATSRWG----AGGSTAD---LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL 82 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwg----agG~~~~---~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL 82 (566)
..+++.+..|||-.--+ +--+..+ ...+.+..++++.|-.++.-...+. ...++.+..+.|+++|..-+|+.
T Consensus 147 ~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita-~~~em~~ra~~a~~~Ga~~vMv~ 225 (364)
T cd08210 147 AYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTG-PPTQLLERARFAKEAGAGGVLIA 225 (364)
T ss_pred HHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCC-CHHHHHHHHHHHHHcCCCEEEee
Confidence 35677888899833322 2222222 2445555566566655433333333 35588888899999999887753
Q ss_pred cCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHH--HcCC
Q 008423 83 RGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKV--DAGA 159 (566)
Q Consensus 83 rGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~Kv--dAGA 159 (566)
++. +..+.++.+++..+ | +-+.+||.+|.-. .+++ .+ ....+-.|+ -+||
T Consensus 226 ---~~~-------------~G~~~~~~l~~~~~--~-l~i~aHra~~ga~~~~~~------~i--s~~~~~~kl~RlaGa 278 (364)
T cd08210 226 ---PGL-------------TGLDTFRELAEDFD--F-LPILAHPAFAGAFVSSGD------GI--SHALLFGTLFRLAGA 278 (364)
T ss_pred ---ccc-------------chHHHHHHHHhcCC--C-cEEEEccccccccccCCC------cc--cHHHHHHHHHHHhCC
Confidence 111 22334555665322 3 7778999888432 2221 11 111234442 2799
Q ss_pred cEE-----EeccCCCHHHHHHHHHHHHHc
Q 008423 160 DLI-----ITQLFYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 160 dFi-----ITQlffD~d~f~~f~~~~R~~ 183 (566)
|.+ .+-+-|..+.+.+..+.|+..
T Consensus 279 d~~~~~~~~g~~~~~~e~~~~ia~~~~~~ 307 (364)
T cd08210 279 DAVIFPNYGGRFGFSREECQAIADACRRP 307 (364)
T ss_pred CEEEeCCCcCCccCCHHHHHHHHHHhcCC
Confidence 988 666778888888888887753
No 242
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=49.95 E-value=1.9e+02 Score=30.85 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 103 ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 103 A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
..++|+.||+.++ ...|.+ |.- .+ .+..++=+++|||+|+.
T Consensus 122 ~~~~i~~ik~~~p-~v~Vi~-----G~v--~t-------------~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 122 VIEMIKFIKKKYP-NVDVIA-----GNV--VT-------------AEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHHHCC-CceEEE-----CCC--CC-------------HHHHHHHHhcCCCEEEE
Confidence 5778888887765 334433 111 11 22334445799999974
No 243
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=49.70 E-value=3.7e+02 Score=29.08 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=29.2
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQ 90 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~ 90 (566)
+...+|-- ..++..+++.+++|.++|++- |+|+=|+|..+
T Consensus 119 ~~w~Qly~-~~d~~~~~~l~~ra~~ag~~a-lvltvD~p~~g 158 (344)
T cd02922 119 PLFFQLYV-NKDRTKTEELLKRAEKLGAKA-IFLTVDAPVLG 158 (344)
T ss_pred cEEEEEee-cCCHHHHHHHHHHHHHcCCCE-EEEECCCCCcC
Confidence 44455542 457888999999999999955 55888988443
No 244
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=49.42 E-value=27 Score=34.58 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCcEEEeccCCC--H--HHHHHHHHHHHHcCCCCcEEeeec
Q 008423 148 LLYLKKKVDAGADLIITQLFYD--T--DMFLKFVNDCRQIGITCPIVPGIM 194 (566)
Q Consensus 148 l~~Lk~KvdAGAdFiITQlffD--~--d~f~~f~~~~R~~Gi~vPIIpGIm 194 (566)
++.+++-+++|||+|++..-.. + +...++++.+++.| ++|+++++.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~ 131 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS 131 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC
Confidence 3456777789999999965432 2 37788999999999 889988765
No 245
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.32 E-value=59 Score=33.62 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=66.3
Q ss_pred CcCEEEecCCCCCCCchhHH-HHHHHHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCc
Q 008423 17 TRHSATSRWGAGGSTADLTL-DIANRMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF 93 (566)
Q Consensus 17 ~p~fVsVTwgagG~~~~~Sl-~la~~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~ 93 (566)
..||+=+.||...-.....+ +....++ .+|+.+++-=|.-.. .+..+++.|..++++|+..|=+=.|--.-.
T Consensus 37 yID~~K~g~Gt~~l~~~~~l~eki~l~~-~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~---- 111 (244)
T PF02679_consen 37 YIDFLKFGWGTSALYPEEILKEKIDLAH-SHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLP---- 111 (244)
T ss_dssp G-SEEEE-TTGGGGSTCHHHHHHHHHHH-CTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS-------
T ss_pred hccEEEecCceeeecCHHHHHHHHHHHH-HcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCC----
Confidence 45787777766554443333 4444555 489999886554333 366889999999999999987655543221
Q ss_pred cccCCCcccHHHHHHHHHHHcCCceeEE-EEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEec
Q 008423 94 VQIQGGFACALDLVKHIRSAYGDYFGIT-VAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQ 165 (566)
Q Consensus 94 ~~~~~~F~~A~dLVk~Ir~~~gd~F~IG-VAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQ 165 (566)
--+..++|+..-..-|.+= =.| ..++.... ..+++.-++.+++=++|||+++|+-
T Consensus 112 ---------~~~r~~~I~~~~~~Gf~v~~EvG--~K~~~~~~------~~~~~~~i~~~~~dLeAGA~~ViiE 167 (244)
T PF02679_consen 112 ---------EEERLRLIRKAKEEGFKVLSEVG--KKDPESDF------SLDPEELIEQAKRDLEAGADKVIIE 167 (244)
T ss_dssp ---------HHHHHHHHHHHCCTTSEEEEEES---SSHHHHT------T--CCHHHHHHHHHHHHTECEEEE-
T ss_pred ---------HHHHHHHHHHHHHCCCEEeeccc--CCCchhcc------cCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 2233344443222113221 011 11111100 0122378999999999999999873
No 246
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=49.29 E-value=20 Score=35.97 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=40.8
Q ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 55 TCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 55 TCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
.|+.-++=.+-+.++.|.+.|-+ +.++.|.. +|+.|-+++..++.+|||+|||-
T Consensus 113 ~Ck~CgkCvi~ei~e~ae~~gyk-vfIvpGgs-------------------~vkkIlKe~k~e~vlgVAC~~eL 166 (209)
T COG1852 113 ECKKCGKCVIGEIKEIAEKYGYK-VFIVPGGS-------------------FVKKILKEEKPEAVLGVACYREL 166 (209)
T ss_pred eecccCCeehHHHHHHHHHhCcE-EEEecChH-------------------HHHHHHhhcCCceEEEEeehHHH
Confidence 36666777888999999999999 88886532 35555555666799999999964
No 247
>PRK13660 hypothetical protein; Provisional
Probab=49.10 E-value=1.3e+02 Score=29.78 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+..|.+.|..+.+-|++-++ .+| .-+|+. |.+.|-.+|+.|++ +.+.++.==++|.+..+.
T Consensus 28 K~aL~~~l~~~~e~G~~wfi-~gg------------alG~d~wAaEvvl~LK~~yp~-lkL~~~~PF~~q~~~W~e---- 89 (182)
T PRK13660 28 KKAIKRKLIALLEEGLEWVI-ISG------------QLGVELWAAEVVLELKEEYPD-LKLAVITPFEEHGENWNE---- 89 (182)
T ss_pred HHHHHHHHHHHHHCCCCEEE-ECC------------cchHHHHHHHHHHHHHhhCCC-eEEEEEeCccchhhcCCH----
Confidence 46788889999999999777 222 135665 89999889998874 777655422455554443
Q ss_pred CccchHHHHHHHHHHHHcCCcEEE--eccCC-CHHHHHHHHHH
Q 008423 140 SNESYQSDLLYLKKKVDAGADLII--TQLFY-DTDMFLKFVND 179 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiI--TQlff-D~d~f~~f~~~ 179 (566)
..-++ -+.+.+-|||++ +.--| ++..|.+.-+.
T Consensus 90 ------~~q~~-y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~f 125 (182)
T PRK13660 90 ------ANQEK-LANILKQADFVKSISKRPYESPAQFRQYNQF 125 (182)
T ss_pred ------HHHHH-HHHHHHhCCEEEEecCCCCCChHHHHHHHHH
Confidence 22233 345667899854 34333 46666553333
No 248
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=49.06 E-value=2.8e+02 Score=31.42 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHH
Q 008423 168 YDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGF 202 (566)
Q Consensus 168 fD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~ 202 (566)
++.+.+.+-++.+|++|++ +-+|.|+ |=+|...+
T Consensus 302 ht~e~v~~ai~~ar~~Gf~~In~DLI~GL-PgEt~ed~ 338 (488)
T PRK08207 302 HTVEDIIEKFHLAREMGFDNINMDLIIGL-PGEGLEEV 338 (488)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEEEeCC-CCCCHHHH
Confidence 5778888888999999874 4567776 45554433
No 249
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=48.24 E-value=3.3e+02 Score=28.10 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=75.6
Q ss_pred chhhccCCCcCEEEecCCC--------CCCCchh----HHHHHHHHHhhcCCceeE---Eec-cccCCHHHHHHHHHHHH
Q 008423 9 GWTAWWPTTRHSATSRWGA--------GGSTADL----TLDIANRMQNTICVETMM---HLT-CTNMPVEKIDHALQTIK 72 (566)
Q Consensus 9 ~~~~~~~~~p~fVsVTwga--------gG~~~~~----Sl~la~~lq~~~Gle~i~---HLT-Crd~n~~~L~~~L~~a~ 72 (566)
+..++.....+.|.|.-.+ -+.+.+. ..++++.+++ .|++++. ++. +...+.+.+.+.+..+.
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~-~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS-HGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 4445666666666664322 2233333 3455566664 7998877 442 11236777888888889
Q ss_pred HcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHH
Q 008423 73 SNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLK 152 (566)
Q Consensus 73 ~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk 152 (566)
++|++.|- | .|..... .-....+|++.+|+.+++ ..||+-++-... .-+....
T Consensus 162 ~~g~~~i~-l-~DT~G~~--------~P~~v~~lv~~l~~~~~~-~~l~~H~Hnd~G----------------la~An~l 214 (273)
T cd07941 162 EAGADWLV-L-CDTNGGT--------LPHEIAEIVKEVRERLPG-VPLGIHAHNDSG----------------LAVANSL 214 (273)
T ss_pred hCCCCEEE-E-ecCCCCC--------CHHHHHHHHHHHHHhCCC-CeeEEEecCCCC----------------cHHHHHH
Confidence 99998765 3 3432111 111367889999988874 677775543221 2345555
Q ss_pred HHHHcCCcEEEe
Q 008423 153 KKVDAGADLIIT 164 (566)
Q Consensus 153 ~KvdAGAdFiIT 164 (566)
+=+++||+.|=|
T Consensus 215 aA~~aGa~~id~ 226 (273)
T cd07941 215 AAVEAGATQVQG 226 (273)
T ss_pred HHHHcCCCEEEE
Confidence 567789997643
No 250
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=48.22 E-value=98 Score=31.09 Aligned_cols=74 Identities=19% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
.+.++.....+.|...|++-|.+..||-.. ..-..++|+.+|+.....+.+|..-
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~-----------~~v~~e~i~~Vk~~~~~Pv~vGGGI-------------- 185 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGAS-----------YPVNPETISLVKKASGIPLIVGGGI-------------- 185 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCC-----------CCCCHHHHHHHHHhhCCCEEEeCCC--------------
Confidence 477888888888899999999986665431 1124889999998765445555432
Q ss_pred CCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
.+.+..++-.++|||.+|+
T Consensus 186 -------rs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 186 -------RSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred -------CCHHHHHHHHHcCCCEEEe
Confidence 1233445555789999885
No 251
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=48.21 E-value=70 Score=31.09 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=48.1
Q ss_pred CCCch-hHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 29 GSTAD-LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 29 G~~~~-~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
||.++ .++.-|..+..++|++.-..+..-+++.+.+.+....|.+.|++-|.|-.|-..
T Consensus 10 GS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAA 69 (162)
T COG0041 10 GSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAA 69 (162)
T ss_pred cCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchh
Confidence 44333 355555556667999999999999999999999999999999999999888753
No 252
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=48.19 E-value=1.1e+02 Score=38.51 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCC---------CCCHHH
Q 008423 147 DLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT---------KIPAEI 217 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv---------~VP~~i 217 (566)
+++.+++=+ ++||+|+.=++|+-+....+.+.++++--.++.+.+++ |...+++++++=+. ..+..+
T Consensus 69 ~~~~~~~~i-~~ad~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~---s~~e~~~ltr~G~f~m~~~~~~~~~~~~~ 144 (1220)
T PLN03069 69 NYETFKKDV-EDANIFIGSLIFVEELAEKVKEAVEPERDRLDAVLVFP---SMPEVMRLNKLGSFSMSQLGQSKSAFAQF 144 (1220)
T ss_pred hHHHHHHHH-hcCCEEEEecccchhhHHHHHHHHHHhhcCCCeEEEEe---chHHHHHHhcccceecccccCCCcchhHH
Confidence 366677766 79999999999999988888888887655566555544 34455555553332 345567
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 218 TAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 218 l~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
++++.+.+.. ++.+.--...+..+++.. ++
T Consensus 145 ~k~~~~~~~~----~~~~~~~~~~~~~k~l~~-iP 174 (1220)
T PLN03069 145 MKKKKQENGG----FEEGMLKLVRTLPKVLKY-LP 174 (1220)
T ss_pred HHhhhhccCc----hHHHHHHHHHhhhhceee-cC
Confidence 7777543321 224443344444444443 44
No 253
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.04 E-value=1.6e+02 Score=31.77 Aligned_cols=63 Identities=6% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCC--cEEEeccC-CCHHHHHHHHHHHHHcCCCCcEEee-ecccCCHHHHHHHhccCCCC
Q 008423 146 SDLLYLKKKVDAGA--DLIITQLF-YDTDMFLKFVNDCRQIGITCPIVPG-IMPINNYKGFLRMTGFCKTK 212 (566)
Q Consensus 146 ~dl~~Lk~KvdAGA--dFiITQlf-fD~d~f~~f~~~~R~~Gi~vPIIpG-ImPI~s~~~~~r~~~l~Gv~ 212 (566)
++.++..+-++||+ |+|+--.- -+.+...++++.+|+.--++||+.| |. |.....++.+ +|+.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~-aGad 163 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELEN-AGAD 163 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHH-cCcC
Confidence 56899999999965 98764322 4678888999999987656899998 65 6665554332 4444
No 254
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=47.99 E-value=3.6e+02 Score=28.50 Aligned_cols=191 Identities=13% Similarity=0.081 Sum_probs=112.5
Q ss_pred chhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCccc---HHHHHH
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFAC---ALDLVK 108 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~---A~dLVk 108 (566)
.+.-++.+..+.+...++++.-+-.---+...+.+.+.++.++|+--|.+=-+..|+.-.+.......... ..+=|+
T Consensus 60 ~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~ 139 (290)
T TIGR02321 60 MSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIA 139 (290)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHH
Confidence 34567777777777788888776553335557888899999999988886544333321100000011222 333344
Q ss_pred HHHHH-cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEec-cCCCHHHHHHHHHHHHHcCCC
Q 008423 109 HIRSA-YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQ-LFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 109 ~Ir~~-~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQ-lffD~d~f~~f~~~~R~~Gi~ 186 (566)
.+++. .++.|.|-+-.--..+. ...++-++|.+.=.+||||-+.-. +.-|.+.+.++++.+. ..
T Consensus 140 Aa~~a~~~~d~~I~ARTDa~~~~-----------~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~---~p 205 (290)
T TIGR02321 140 AATAARADRDFVVIARVEALIAG-----------LGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP---GK 205 (290)
T ss_pred HHHHhCCCCCEEEEEEecccccc-----------CCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC---CC
Confidence 44432 34456664332211110 112367999999999999987777 4689999988887653 23
Q ss_pred CcEE--eeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 008423 187 CPIV--PGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG 250 (566)
Q Consensus 187 vPII--pGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~G 250 (566)
+|++ +|-.|..+.+.+..+.++.=+..|...+... +.-..+..+.+++.|
T Consensus 206 ~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa--------------~~a~~~~~~~i~~~g 257 (290)
T TIGR02321 206 VPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAA--------------VGAVREVFARIRRDG 257 (290)
T ss_pred CCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHHH--------------HHHHHHHHHHHHHcC
Confidence 5664 3444666777777654333377776654432 233345666666554
No 255
>PRK10812 putative DNAse; Provisional
Probab=47.95 E-value=52 Score=33.95 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=39.4
Q ss_pred ceeEEeccccCC--HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecC
Q 008423 49 ETMMHLTCTNMP--VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYP 126 (566)
Q Consensus 49 e~i~HLTCrd~n--~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyP 126 (566)
++=.||...... ...+++.|.+|.++||..+++++-|+. .+..+.+| .+.|+. ...++..+|
T Consensus 5 DtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~~~-----------~~~~~~~l----~~~~~~-v~~~~GiHP 68 (265)
T PRK10812 5 DSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLP-----------GYRHMRDL----VGERDN-VVFSCGVHP 68 (265)
T ss_pred EeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCCHH-----------HHHHHHHH----HhhCCC-eEEEEEeCC
Confidence 445576532222 346778899999999999998776653 12234443 344653 556677788
Q ss_pred CC
Q 008423 127 EG 128 (566)
Q Consensus 127 Eg 128 (566)
..
T Consensus 69 ~~ 70 (265)
T PRK10812 69 LN 70 (265)
T ss_pred CC
Confidence 54
No 256
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=47.73 E-value=63 Score=39.86 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=75.8
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCC---CCCCCCCCCCCccchHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGH---PDTIGPDGVASNESYQSDLL 149 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgH---pe~~~~~~~~~~~~~~~dl~ 149 (566)
..+++||+|.|.+...|. .+.|+| +.++++.+|+ .| +-.|.+-.+|... +...+.. +..+.+. ..+.
T Consensus 4 ~~~~kvlviG~g~~~igq-----~~e~d~sg~q~~kalke-~G-~~vi~v~~np~~~~~~~~~aD~~-y~~p~~~-~~v~ 74 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQ-----AAEFDYSGSQACKALKE-EG-YRVILVNSNPATIMTDPEMADKV-YIEPLTP-EAVE 74 (1050)
T ss_pred CCCcEEEEECCCcchhcc-----hhcccchHHHHHHHHHH-cC-CEEEEEecchhhccCChhcCCEE-EECCCCH-HHHH
Confidence 468999999999976542 467998 7899999986 55 3578888888542 1111110 1111122 2344
Q ss_pred HHHHHHHcCCcEEEeccCCCHHH----HHHHHHHHHHcCCCCcEE-e---eecccCCHHHHHHHhccCCCCCCHH
Q 008423 150 YLKKKVDAGADLIITQLFYDTDM----FLKFVNDCRQIGITCPIV-P---GIMPINNYKGFLRMTGFCKTKIPAE 216 (566)
Q Consensus 150 ~Lk~KvdAGAdFiITQlffD~d~----f~~f~~~~R~~Gi~vPII-p---GImPI~s~~~~~r~~~l~Gv~VP~~ 216 (566)
.+.+| -+.|.|++-+-++... -......+++.|+. ++ + .+.-+++...++++.+-.|+.+|..
T Consensus 75 ~ii~~--e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~--~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~ 145 (1050)
T TIGR01369 75 KIIEK--ERPDAILPTFGGQTALNLAVELEESGVLEKYGVE--VLGTPVEAIKKAEDRELFREAMKEIGEPVPES 145 (1050)
T ss_pred HHHHH--hCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCE--EECCCHHHHHHhCCHHHHHHHHHHCCCCCCCe
Confidence 44444 4789999865543322 12344557777743 32 1 1222345556666666778888864
No 257
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.50 E-value=2.8e+02 Score=27.10 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=78.8
Q ss_pred hcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--CCCc-cccCCCcccHHHHHHHHHHHcCCceeEE
Q 008423 45 TICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG--QDKF-VQIQGGFACALDLVKHIRSAYGDYFGIT 121 (566)
Q Consensus 45 ~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~--~~~~-~~~~~~F~~A~dLVk~Ir~~~gd~F~IG 121 (566)
..+.+.+.++.+. +.+.+.+....++++|++-|=+=-|=|... .+.+ .......+...++|+.+|+..+..+.+.
T Consensus 52 ~~~~p~~~qi~g~--~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk 129 (231)
T cd02801 52 PEERPLIVQLGGS--DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVK 129 (231)
T ss_pred ccCCCEEEEEcCC--CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3578888888875 467788888888889998885433433210 0000 0011234457788899988766345555
Q ss_pred EEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE------eccCCCHHHHHHHHHHHHHcCCCCcEEeeecc
Q 008423 122 VAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII------TQLFYDTDMFLKFVNDCRQIGITCPIVPGIMP 195 (566)
Q Consensus 122 VAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI------TQlffD~d~f~~f~~~~R~~Gi~vPIIpGImP 195 (566)
+-..+... + .-++.++.=.++|+|+|. .| .|......++++++++. .++||+.. =-
T Consensus 130 ~r~~~~~~------~---------~~~~~~~~l~~~Gvd~i~v~~~~~~~-~~~~~~~~~~~~~i~~~-~~ipvi~~-Gg 191 (231)
T cd02801 130 IRLGWDDE------E---------ETLELAKALEDAGASALTVHGRTREQ-RYSGPADWDYIAEIKEA-VSIPVIAN-GD 191 (231)
T ss_pred EeeccCCc------h---------HHHHHHHHHHHhCCCEEEECCCCHHH-cCCCCCCHHHHHHHHhC-CCCeEEEe-CC
Confidence 43322110 0 122333333457999984 33 12212234556667663 46887652 24
Q ss_pred cCCHHHHHHHhc
Q 008423 196 INNYKGFLRMTG 207 (566)
Q Consensus 196 I~s~~~~~r~~~ 207 (566)
|.+.+.+.++.+
T Consensus 192 i~~~~d~~~~l~ 203 (231)
T cd02801 192 IFSLEDALRCLE 203 (231)
T ss_pred CCCHHHHHHHHH
Confidence 666666665443
No 258
>PLN02431 ferredoxin--nitrite reductase
Probab=47.43 E-value=1.4e+02 Score=34.75 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCCCCchhHHHHHHHHHhhcCCceeEEecccc------CCHHHHHHHHHHHHHcCCCEEE-------EecCCCCCCCCCc
Q 008423 27 AGGSTADLTLDIANRMQNTICVETMMHLTCTN------MPVEKIDHALQTIKSNGIQNVL-------ALRGDPPHGQDKF 93 (566)
Q Consensus 27 agG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd------~n~~~L~~~L~~a~~~GIrNIL-------aLrGDpp~~~~~~ 93 (566)
|+|.....-+...+.+.+++|-.-..|+|.|. ...+.+.+.+..+.+.|+...= -+.|+|-.+-+
T Consensus 144 PgG~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L~~vGL~t~~a~gd~vRNI~~~P~aG~~-- 221 (587)
T PLN02431 144 PNGVTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGLEEVGLTSLQSGMDNVRNPVGNPLAGID-- 221 (587)
T ss_pred CCcccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHHHHcCCCchhccCCCCCCcccCCCCCCC--
Confidence 77765444444444444458877789999975 4788888998888887765432 12244433211
Q ss_pred cccCCCcc---cHHHHHHHHHH---------HcCCceeEEEEecCCCC
Q 008423 94 VQIQGGFA---CALDLVKHIRS---------AYGDYFGITVAGYPEGH 129 (566)
Q Consensus 94 ~~~~~~F~---~A~dLVk~Ir~---------~~gd~F~IGVAgyPEgH 129 (566)
....++ ++.+|-+++-. ..+-.|.|+|.|.|...
T Consensus 222 --~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~ 267 (587)
T PLN02431 222 --PHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLF 267 (587)
T ss_pred --ccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCcccc
Confidence 111222 34444334321 13456999999988653
No 259
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=47.26 E-value=91 Score=32.01 Aligned_cols=177 Identities=12% Similarity=0.154 Sum_probs=90.0
Q ss_pred CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCC
Q 008423 48 VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 48 le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPE 127 (566)
+++=.||+.... ...++..|.+|++.||..++++.-|+. .+..+.+| .+.++. ...++..+|.
T Consensus 6 iD~HcHl~~~~~-~~~~~~~l~~a~~~gv~~~~~~~~~~~-----------~~~~~~~l----~~~~~~-v~~~~GiHP~ 68 (258)
T PRK11449 6 IDTHCHFDFPPF-SGDEEASLQRAAQAGVGKIIVPATEAE-----------NFARVLAL----AERYQP-LYAALGLHPG 68 (258)
T ss_pred EEeccCCCChhh-ccCHHHHHHHHHHCCCCEEEEeeCCHH-----------HHHHHHHH----HHhCCC-EEEEEeeCcC
Confidence 355567765322 346778899999999999998765432 12233333 345653 6677777885
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHHH-----------cCCcEEEeccCC--CHHHHHHHHHHHHHcCCCCcEEeeec
Q 008423 128 GHPDTIGPDGVASNESYQSDLLYLKKKVD-----------AGADLIITQLFY--DTDMFLKFVNDCRQIGITCPIVPGIM 194 (566)
Q Consensus 128 gHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd-----------AGAdFiITQlff--D~d~f~~f~~~~R~~Gi~vPIIpGIm 194 (566)
--.+ .. +.+++.+++.++ .|=|+.....-. -.+.|.++++.+.+.+ +||+.=.
T Consensus 69 ~~~~--~~---------~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~--~Pv~iH~- 134 (258)
T PRK11449 69 MLEK--HS---------DVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYD--LPVILHS- 134 (258)
T ss_pred cccc--CC---------HHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhC--CCEEEEe-
Confidence 4221 11 144555554442 244654221111 2345666777777654 8876332
Q ss_pred ccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCeEEEEcCCchHHHHHHHH
Q 008423 195 PINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG----IKTLHLYTLNMEKSALAILL 270 (566)
Q Consensus 195 PI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~G----v~GiHfyTlN~e~~v~~IL~ 270 (566)
....+.+..+.+-.+... .-+ +.-...+ .++++++++.| +.|. .|....+.+.++++
T Consensus 135 -r~a~~~~~~il~~~~~~~-~~i---~H~fsG~------------~~~a~~~l~~G~~iS~~g~--it~~~~~~~~~~~~ 195 (258)
T PRK11449 135 -RRTHDKLAMHLKRHDLPR-TGV---VHGFSGS------------LQQAERFVQLGYKIGVGGT--ITYPRASKTRDVIA 195 (258)
T ss_pred -cCccHHHHHHHHhcCCCC-CeE---EEcCCCC------------HHHHHHHHHCCCEEEeCcc--ccccCcHHHHHHHH
Confidence 233444333333222110 111 1112222 34566666664 3332 23445566777777
Q ss_pred HcCC
Q 008423 271 NLGL 274 (566)
Q Consensus 271 ~l~l 274 (566)
.+.+
T Consensus 196 ~ipl 199 (258)
T PRK11449 196 KLPL 199 (258)
T ss_pred hCCh
Confidence 7654
No 260
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=47.15 E-value=73 Score=36.39 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=41.7
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEecccc------CCHHHHHHHHHHHHHcCC----------CEEEEec
Q 008423 20 SATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTN------MPVEKIDHALQTIKSNGI----------QNVLALR 83 (566)
Q Consensus 20 fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd------~n~~~L~~~L~~a~~~GI----------rNILaLr 83 (566)
|+-=.=-|+|.....-+...+.+.+++|-. .+|+|.|. ...+.+.+.+..+.++|+ |||. ..
T Consensus 62 fmvRvripgG~lt~~Ql~~la~ia~~yg~g-~i~lTtRQniQl~gI~~~~l~~v~~~L~~~GL~t~~a~gd~~RnV~-c~ 139 (541)
T TIGR02041 62 FMLRCRLPGGVITPKQWLAIDKFAREYGNG-SIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRNVL-CT 139 (541)
T ss_pred eEEEEecCCcEECHHHHHHHHHHHHHhCCC-eEEEecccceEEcCCChhHHHHHHHHHHHcCCCccccCCCCCCcee-CC
Confidence 443334477875444444444444457854 78999964 478888888888877765 5655 55
Q ss_pred CCCC
Q 008423 84 GDPP 87 (566)
Q Consensus 84 GDpp 87 (566)
|+|-
T Consensus 140 ~~p~ 143 (541)
T TIGR02041 140 SNPY 143 (541)
T ss_pred CCcc
Confidence 6543
No 261
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=46.74 E-value=74 Score=34.79 Aligned_cols=113 Identities=15% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCceeEEeccccCCH-HHHHHHHHHH-HHcCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEE
Q 008423 47 CVETMMHLTCTNMPV-EKIDHALQTI-KSNGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVA 123 (566)
Q Consensus 47 Gle~i~HLTCrd~n~-~~L~~~L~~a-~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVA 123 (566)
|+|.-+++-+++-.. .++...+.-+ ...|.++++.+.-|.. |.. +-.++|.+-+..|. =-+|=-
T Consensus 103 G~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv------------~pre~Nri~r~~l~~~Gg-evvgE~ 169 (363)
T PF13433_consen 103 GFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYV------------YPRESNRIIRDLLEARGG-EVVGER 169 (363)
T ss_dssp -----TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSH------------HHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred cccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCcc------------chHHHHHHHHHHHHHcCC-EEEEEE
Confidence 677766666666643 2333333333 5668888888876652 333 44444443334443 245555
Q ss_pred ecCCCCCCCCCCCCCCCccchHHHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCC---CcEE
Q 008423 124 GYPEGHPDTIGPDGVASNESYQSDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGIT---CPIV 190 (566)
Q Consensus 124 gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~---vPII 190 (566)
=.|-|+ .|...+.+||. +..|||+..++=|... .|.+.++++|++ +||.
T Consensus 170 Y~plg~----------------td~~~ii~~I~~~~Pd~V~stlvG~s~~--aF~r~~~~aG~~~~~~Pi~ 222 (363)
T PF13433_consen 170 YLPLGA----------------TDFDPIIAEIKAAKPDFVFSTLVGDSNV--AFYRAYAAAGLDPERIPIA 222 (363)
T ss_dssp EE-S-H----------------HHHHHHHHHHHHHT-SEEEEE--TTCHH--HHHHHHHHHH-SSS---EE
T ss_pred EecCCc----------------hhHHHHHHHHHhhCCCEEEEeCcCCcHH--HHHHHHHHcCCCcccCeEE
Confidence 667775 56777776664 4899999999997654 789999999975 4554
No 262
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=46.67 E-value=69 Score=31.03 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
+++..+ +.+|++.-.++.+-.++.+.+.+.+..|.+.|++=|.+..|-.
T Consensus 16 ~a~~~L-~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~a 64 (156)
T TIGR01162 16 KAADIL-EEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGA 64 (156)
T ss_pred HHHHHH-HHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 444444 5699999999999999999999999999999998888887754
No 263
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=46.67 E-value=3.3e+02 Score=29.93 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=82.9
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCC-ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICV-ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gl-e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
.++.....+++-+.+ +.- ...-.+....+.+.++. ..+..+-+.+... ..+..|.++|+.-|.+.. -.+.
T Consensus 23 ~~~~~~Gv~~ie~g~-p~~--~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~----~~v~~a~~aGAdgV~v~g-~~~~- 93 (430)
T PRK07028 23 KEAVAGGADWIEAGT-PLI--KSEGMNAIRTLRKNFPDHTIVADMKTMDTGA----IEVEMAAKAGADIVCILG-LADD- 93 (430)
T ss_pred HHHHhcCCcEEEeCC-HHH--HHhhHHHHHHHHHHCCCCEEEEEeeeccchH----HHHHHHHHcCCCEEEEec-CCCh-
Confidence 344556667776632 110 01123344444444442 2333444444422 267778889998888662 1110
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD 169 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD 169 (566)
....+.++.+++ +|..+.+|+ ..|+ ..++++++=.++|+|++.+-+.|+
T Consensus 94 -----------~~~~~~i~~a~~-~G~~~~~g~-~s~~------------------t~~e~~~~a~~~GaD~I~~~pg~~ 142 (430)
T PRK07028 94 -----------STIEDAVRAARK-YGVRLMADL-INVP------------------DPVKRAVELEELGVDYINVHVGID 142 (430)
T ss_pred -----------HHHHHHHHHHHH-cCCEEEEEe-cCCC------------------CHHHHHHHHHhcCCCEEEEEeccc
Confidence 013466777775 665444433 2222 123445555678999998878775
Q ss_pred HHHH----HHHHHHHHHcCCCCcEE--eeecccCCHHHHHHHh--ccCCCCCCHHHH
Q 008423 170 TDMF----LKFVNDCRQIGITCPIV--PGIMPINNYKGFLRMT--GFCKTKIPAEIT 218 (566)
Q Consensus 170 ~d~f----~~f~~~~R~~Gi~vPII--pGImPI~s~~~~~r~~--~l~Gv~VP~~il 218 (566)
...+ .+.++++++. .++||+ .||- ...+..+. -..++-+-..|.
T Consensus 143 ~~~~~~~~~~~l~~l~~~-~~iPI~a~GGI~----~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 143 QQMLGKDPLELLKEVSEE-VSIPIAVAGGLD----AETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred hhhcCCChHHHHHHHHhh-CCCcEEEECCCC----HHHHHHHHHcCCCEEEEChHHc
Confidence 4333 3466676653 357774 3442 33333222 244555555554
No 264
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=46.57 E-value=3.9e+02 Score=28.42 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCC--CcccHHHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQG--GFACALDLVKHI 110 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~--~F~~A~dLVk~I 110 (566)
..-++.+..+.+...++++.-+-.---+...+.....++.++|+--|.+=-...|+.-.+-. ... ..+....=|+.+
T Consensus 63 ~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~-~k~lv~~ee~~~kI~Aa 141 (294)
T TIGR02319 63 SEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLE-GKRLISTEEMTGKIEAA 141 (294)
T ss_pred HHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCC-CccccCHHHHHHHHHHH
Confidence 44566777777777888888766543355557888999999999998865544443211100 010 111233333444
Q ss_pred HHH-cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 111 RSA-YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 111 r~~-~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
++. ..++|.|-+-.--.. ...+++-++|.+.=.+||||-|.-.-.=+.+.+.++.+.+ +.|+
T Consensus 142 ~~A~~~~d~~I~ARTDa~~------------~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~-----~~P~ 204 (294)
T TIGR02319 142 VEAREDEDFTIIARTDARE------------SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI-----DAPL 204 (294)
T ss_pred HHhccCCCeEEEEEecccc------------cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc-----CCCe
Confidence 432 223466644332211 1134477999999999999987766667888888777654 4676
Q ss_pred Eeee-----cccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCchHH
Q 008423 190 VPGI-----MPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264 (566)
Q Consensus 190 IpGI-----mPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN~e~~ 264 (566)
++-+ .|..|.+.+..+ -+.-+..|...+... +.-+.+..++|++.|...-.+-.|...-.
T Consensus 205 ~~nv~~~~~~p~~s~~eL~~l-G~~~v~~~~~~~~aa--------------~~a~~~~~~~l~~~G~~~~~~~~~~~~~~ 269 (294)
T TIGR02319 205 LANMVEGGKTPWLTTKELESI-GYNLAIYPLSGWMAA--------------ASVLRKLFTELREAGTTQKFWDDMGLKMS 269 (294)
T ss_pred eEEEEecCCCCCCCHHHHHHc-CCcEEEEcHHHHHHH--------------HHHHHHHHHHHHHcCCcccccccccccCC
Confidence 5433 345566665542 233355666554432 33445677777776632212222222223
Q ss_pred HHHHHHHcCC
Q 008423 265 ALAILLNLGL 274 (566)
Q Consensus 265 v~~IL~~l~l 274 (566)
..++.+.+|+
T Consensus 270 ~~e~~~~~~~ 279 (294)
T TIGR02319 270 FAELFEVFEY 279 (294)
T ss_pred HHHHHHHhCh
Confidence 4555555554
No 265
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=46.55 E-value=1.1e+02 Score=32.84 Aligned_cols=57 Identities=4% Similarity=0.169 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcC--CcEEEeccCC-CHHHHHHHHHHHHHcCCCCcEEee-ecccCCHHHHHHH
Q 008423 146 SDLLYLKKKVDAG--ADLIITQLFY-DTDMFLKFVNDCRQIGITCPIVPG-IMPINNYKGFLRM 205 (566)
Q Consensus 146 ~dl~~Lk~KvdAG--AdFiITQlff-D~d~f~~f~~~~R~~Gi~vPIIpG-ImPI~s~~~~~r~ 205 (566)
++++++.+.++|| +|+++.-.-- +.+..++.++.+|+.-...+||.| |. +....+++
T Consensus 94 e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~---t~e~a~~l 154 (321)
T TIGR01306 94 CEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG---TPEAVREL 154 (321)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHH
Confidence 6799999999999 7998765533 446777888888875433448888 64 56555544
No 266
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.36 E-value=1.4e+02 Score=27.91 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCceeE-EeccccCC---------------HHHHHHHHHHHHHcCCCEEEEecC
Q 008423 37 DIANRMQNTICVETMM-HLTCTNMP---------------VEKIDHALQTIKSNGIQNVLALRG 84 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~-HLTCrd~n---------------~~~L~~~L~~a~~~GIrNILaLrG 84 (566)
++.+.++ ..|+.++. |..+.... .+.+...+..|+.+|++.+..-.|
T Consensus 31 ~~~~~~~-~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 31 ELRRLLE-DYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHH-HTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHH-HcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 4444455 58999544 54444333 678999999999999999999988
No 267
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=46.29 E-value=2.8e+02 Score=26.78 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=15.3
Q ss_pred CCcEEEeccCCCHHHHHHHHHHHHHcCC--CCcEE
Q 008423 158 GADLIITQLFYDTDMFLKFVNDCRQIGI--TCPIV 190 (566)
Q Consensus 158 GAdFiITQlffD~d~f~~f~~~~R~~Gi--~vPII 190 (566)
+++.|+.-. +.+....+++.+++.|+ +++++
T Consensus 191 ~~~~v~~~~--~~~~~~~~~~~~~~~g~~~~~~~i 223 (299)
T cd04509 191 KPDVIVLCG--SGEDAATILKQAAEAGLTGGYPIL 223 (299)
T ss_pred CCCEEEEcc--cchHHHHHHHHHHHcCCCCCCcEE
Confidence 455555422 22444555666666665 44443
No 268
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=46.19 E-value=4.5e+02 Score=29.18 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHcCC--ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE-Ee-c-----------c
Q 008423 102 CALDLVKHIRSAYGD--YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI-IT-Q-----------L 166 (566)
Q Consensus 102 ~A~dLVk~Ir~~~gd--~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-IT-Q-----------l 166 (566)
.-.+|++.|++.++- ...+.+-++|+.-. . +.++.| .++|.+.+ |. | =
T Consensus 120 ~l~~ll~~l~~~~~~~~~~e~tie~np~~lt----~----------e~l~~l---~~aG~~risiGvqS~~~~~L~~l~r 182 (453)
T PRK09249 120 QLRRLMALLREHFNFAPDAEISIEIDPRELD----L----------EMLDAL---RELGFNRLSLGVQDFDPEVQKAVNR 182 (453)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEecCCcCC----H----------HHHHHH---HHcCCCEEEECCCCCCHHHHHHhCC
Confidence 356778888876532 24567777776431 0 223322 23687654 11 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCC-CC--cEEeeecccCCHHHH
Q 008423 167 FYDTDMFLKFVNDCRQIGI-TC--PIVPGIMPINNYKGF 202 (566)
Q Consensus 167 ffD~d~f~~f~~~~R~~Gi-~v--PIIpGImPI~s~~~~ 202 (566)
..+.+.+.+-++.++++|+ ++ -+|.|+ |-+|...+
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl-Pgqt~e~~ 220 (453)
T PRK09249 183 IQPFEFTFALVEAARELGFTSINIDLIYGL-PKQTPESF 220 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEccC-CCCCHHHH
Confidence 2566777788888888886 22 235554 44554443
No 269
>PLN02455 fructose-bisphosphate aldolase
Probab=46.18 E-value=79 Score=34.38 Aligned_cols=135 Identities=14% Similarity=0.202 Sum_probs=77.4
Q ss_pred cchHHHHHHHHHHHHcCCcEE------------EeccCC--CHHHHHHHHHHHHHcCCCCcEE-eeecccCCHH--HHHH
Q 008423 142 ESYQSDLLYLKKKVDAGADLI------------ITQLFY--DTDMFLKFVNDCRQIGITCPIV-PGIMPINNYK--GFLR 204 (566)
Q Consensus 142 ~~~~~dl~~Lk~KvdAGAdFi------------ITQlff--D~d~f~~f~~~~R~~Gi~vPII-pGImPI~s~~--~~~r 204 (566)
+.++...+|++++-+.||.|. =|+.+. ++..+.+|..-|.+.|+ +||+ |-|++=.++. .-.+
T Consensus 121 ~GLDgL~~R~~~y~~~GarFAKWRsVikI~~~~PS~~ai~~na~~LArYA~icQ~~Gl-VPIVEPEvL~dGdH~i~~c~~ 199 (358)
T PLN02455 121 QGLDGLGARCAKYYEAGARFAKWRAVLKIGPTEPSELAIQENAQGLARYAIICQENGL-VPIVEPEILVDGSHDIKKCAA 199 (358)
T ss_pred cchHHHHHHHHHHHhcCCceeeceeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CceecccccCCCCCCHHHHHH
Confidence 345588999999999999986 333333 45668899999999996 6775 7787665442 1100
Q ss_pred H-----------hccCCCCCCHHHHHH--hCCCCC----CHHHHHHHHHHHHHHHHHHHHH---cCCCeEEEEcCCch-H
Q 008423 205 M-----------TGFCKTKIPAEITAA--LEPIKD----NEEAVKAYGIHLGAEMCKKILA---HGIKTLHLYTLNME-K 263 (566)
Q Consensus 205 ~-----------~~l~Gv~VP~~il~~--Le~~kd----dde~vk~~Gv~la~e~i~~L~~---~Gv~GiHfyTlN~e-~ 263 (566)
. ..--+|.+..-+++- .-+.++ .++ +++.-.++.|+. ..++||.|-.=+.. +
T Consensus 200 Vte~Vl~~vf~aL~~~~V~lEG~LLKPnMV~pG~~~~~~s~e-------~vA~~Tv~~l~rtVP~avpGI~FLSGGqSee 272 (358)
T PLN02455 200 VTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDSPKVSPE-------VIAEYTVRALQRTVPPAVPGIVFLSGGQSEE 272 (358)
T ss_pred HHHHHHHHHHHHHHHcCcccccceeccccccCCcccCcCCHH-------HHHHHHHHHHHhhCCccCCcceecCCCCcHH
Confidence 0 112234444333220 111111 222 233344555553 35999999988843 3
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCC
Q 008423 264 SALAILLNLGLIEESKISRSLPWRPP 289 (566)
Q Consensus 264 ~v~~IL~~l~l~~~~~~~~~~p~~~~ 289 (566)
....=|++++-.+ .+.||.-|
T Consensus 273 eAt~~LnamN~~~-----~~~PW~Ls 293 (358)
T PLN02455 273 EATLNLNAMNKLK-----TLKPWTLS 293 (358)
T ss_pred HHHHHHHHHhcCC-----CCCCceec
Confidence 4444455555332 35689764
No 270
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=45.93 E-value=3.6e+02 Score=29.25 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=54.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCCCCCCCCccchHH
Q 008423 68 LQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIGPDGVASNESYQS 146 (566)
Q Consensus 68 L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~~~~~~~~~~~~~ 146 (566)
..-++..|.+.|-+|.-|-.-+ -..+..+.+.++ +.| .||... .+|.+..+... ...
T Consensus 164 ~~li~~~~w~~Vaii~~~d~yG----------~~~~~~f~~~~~-~~G--icIa~~e~~~~~~~~~~~---------~~~ 221 (403)
T cd06361 164 AHLIKKSGWNWVGIIITDDDYG----------RSALETFIIQAE-ANG--VCIAFKEILPASLSDNTK---------LNR 221 (403)
T ss_pred HHHHHHcCCcEEEEEEecCchH----------HHHHHHHHHHHH-HCC--eEEEEEEEecCccCcchh---------HHH
Confidence 3344678999999885332110 001233333343 344 566432 44544221110 012
Q ss_pred HHHHHHH-HHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 147 DLLYLKK-KVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 147 dl~~Lk~-KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
+...+.+ +.+++|+.||. +-+.+....+++++++.|++.+.|.
T Consensus 222 ~~~~~~~~ik~~~a~vVvv--~~~~~~~~~l~~~a~~~g~~~~wig 265 (403)
T cd06361 222 IIRTTEKIIEENKVNVIVV--FARQFHVFLLFNKAIERNINKVWIA 265 (403)
T ss_pred HHHHHHHHHhcCCCeEEEE--EeChHHHHHHHHHHHHhCCCeEEEE
Confidence 3333434 34579999986 3445566789999999998766654
No 271
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=45.64 E-value=3.7e+02 Score=27.99 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=27.8
Q ss_pred HHHHHHHH-HcCCcEEEeccCCCHHHHHHHHHHHHHcCCC---CcEEe
Q 008423 148 LLYLKKKV-DAGADLIITQLFYDTDMFLKFVNDCRQIGIT---CPIVP 191 (566)
Q Consensus 148 l~~Lk~Kv-dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~---vPIIp 191 (566)
..-...|+ ++|+|.|+..... +....|++.+|+.|++ +|++.
T Consensus 177 ~~~~v~~l~~~~pd~v~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~ 222 (348)
T cd06355 177 FQSIINKIKAAKPDVVVSTVNG--DSNVAFFKQLKAAGITASKVPVLS 222 (348)
T ss_pred HHHHHHHHHHhCCCEEEEeccC--CchHHHHHHHHHcCCCccCCeeEE
Confidence 33334443 4599999985443 3457789999999986 45553
No 272
>PRK08005 epimerase; Validated
Probab=45.54 E-value=3.4e+02 Score=27.41 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=78.3
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQ 90 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~ 90 (566)
.++.+..++.|+|-.-+. ....++...+++ .|+.+=.=|.+ +.+.+.+...|. -+.-||+++-+|-.+|
T Consensus 75 ~~~~~~gad~It~H~Ea~----~~~~~~l~~Ik~-~G~k~GlAlnP-~Tp~~~i~~~l~-----~vD~VlvMsV~PGf~G 143 (210)
T PRK08005 75 PWLAAIRPGWIFIHAESV----QNPSEILADIRA-IGAKAGLALNP-ATPLLPYRYLAL-----QLDALMIMTSEPDGRG 143 (210)
T ss_pred HHHHHhCCCEEEEcccCc----cCHHHHHHHHHH-cCCcEEEEECC-CCCHHHHHHHHH-----hcCEEEEEEecCCCcc
Confidence 345566778877766542 224566677775 68887666665 245566666554 5778999998887654
Q ss_pred CCccccCCCcc-cHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE-EeccCC
Q 008423 91 DKFVQIQGGFA-CALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI-ITQLFY 168 (566)
Q Consensus 91 ~~~~~~~~~F~-~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff 168 (566)
. .|. .+.+=|+.+|+.... ..|.|=|- -..+.+++-.+||||.+ .-..+|
T Consensus 144 Q-------~f~~~~~~KI~~l~~~~~~-~~I~VDGG--------------------I~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 144 Q-------QFIAAMCEKVSQSREHFPA-AECWADGG--------------------ITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred c-------eecHHHHHHHHHHHHhccc-CCEEEECC--------------------CCHHHHHHHHHCCCCEEEEChHhh
Confidence 3 354 377777777765433 23554431 11344566678999965 445566
Q ss_pred CHHHHHHHHHH
Q 008423 169 DTDMFLKFVND 179 (566)
Q Consensus 169 D~d~f~~f~~~ 179 (566)
..+.+.+-++.
T Consensus 196 ~~~d~~~~~~~ 206 (210)
T PRK08005 196 TTANYDVTLSQ 206 (210)
T ss_pred CCCCHHHHHHH
Confidence 43334444443
No 273
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=45.46 E-value=3.7e+02 Score=27.88 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=79.2
Q ss_pred HhhcCCceeEEeccccCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCC--CCCccccCCCcccHHHHHHHHHHHcCCcee
Q 008423 43 QNTICVETMMHLTCTNMPVEKIDHALQTIKSNG-IQNVLALRGDPPHG--QDKFVQIQGGFACALDLVKHIRSAYGDYFG 119 (566)
Q Consensus 43 q~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~G-IrNILaLrGDpp~~--~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~ 119 (566)
++..+.+++..+.+. +.+++.+....++++| ++-|=+=-|-|... +.. .....+...++|+.+|+.. .+-
T Consensus 87 ~~~~~~p~i~si~g~--~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~---~~~~~~~~~eiv~~vr~~~--~~p 159 (301)
T PRK07259 87 LEEFDTPIIANVAGS--TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMA---FGTDPELAYEVVKAVKEVV--KVP 159 (301)
T ss_pred HhccCCcEEEEeccC--CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccc---cccCHHHHHHHHHHHHHhc--CCC
Confidence 334578899999775 5788888888888998 87664322322211 111 1122345788889998765 356
Q ss_pred EEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCcEEEe-----ccCCCHH--------------------HH
Q 008423 120 ITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGADLIIT-----QLFYDTD--------------------MF 173 (566)
Q Consensus 120 IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAdFiIT-----QlffD~d--------------------~f 173 (566)
|.|=..|.- .++..+.+.+ ++|||.|+- ++-.|.+ ..
T Consensus 160 v~vKl~~~~-----------------~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~ 222 (301)
T PRK07259 160 VIVKLTPNV-----------------TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIA 222 (301)
T ss_pred EEEEcCCCc-----------------hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCccccc
Confidence 666554421 2233343333 579997641 2211211 24
Q ss_pred HHHHHHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 174 LKFVNDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 174 ~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
.+++.+++++ +++||| |.=.|.|.+.+.++.
T Consensus 223 l~~v~~i~~~-~~ipvi-~~GGI~~~~da~~~l 253 (301)
T PRK07259 223 LRMVYQVYQA-VDIPII-GMGGISSAEDAIEFI 253 (301)
T ss_pred HHHHHHHHHh-CCCCEE-EECCCCCHHHHHHHH
Confidence 5677777764 357754 455666777666554
No 274
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=45.35 E-value=4.2e+02 Score=28.47 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=75.2
Q ss_pred EeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc--cHHHHHHHHHHHcCCceeEEEEecCCCCC
Q 008423 53 HLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA--CALDLVKHIRSAYGDYFGITVAGYPEGHP 130 (566)
Q Consensus 53 HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~--~A~dLVk~Ir~~~gd~F~IGVAgyPEgHp 130 (566)
|.....++.++..+.+..+.++||+-|=+=-||.-.+.. . .-+|. ...+.++.+++..+. -.+.+-.-|-.
T Consensus 16 q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s-~---~~g~~~~~~~e~i~~~~~~~~~-~~~~~ll~pg~-- 88 (337)
T PRK08195 16 HAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSS-F---NYGFGAHTDEEYIEAAAEVVKQ-AKIAALLLPGI-- 88 (337)
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcc-c---cCCCCCCCHHHHHHHHHHhCCC-CEEEEEeccCc--
Confidence 445556788999999999999999999876565432111 1 00111 156677777655442 34444344421
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHcCCcEE-EeccCCCHHHHHHHHHHHHHcCCCCcEEeeec
Q 008423 131 DTIGPDGVASNESYQSDLLYLKKKVDAGADLI-ITQLFYDTDMFLKFVNDCRQIGITCPIVPGIM 194 (566)
Q Consensus 131 e~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm 194 (566)
..++.+++-.++|+|.| |.=.+-+.+...+.++.+|+.|.. +...+|
T Consensus 89 ---------------~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~--v~~~l~ 136 (337)
T PRK08195 89 ---------------GTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMD--TVGFLM 136 (337)
T ss_pred ---------------ccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCe--EEEEEE
Confidence 11345777888999963 222566788899999999999965 444444
No 275
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=45.29 E-value=3.3e+02 Score=28.76 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=38.9
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-eccC--CCHHHHHHHHHHHHHcCCC
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-TQLF--YDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlf--fD~d~f~~f~~~~R~~Gi~ 186 (566)
.+.|.+=|.++.|-...... -..+.-++.++.=.++|..+-+ |-++ .+.+.+.++++.+++.|++
T Consensus 126 ~i~VSLDG~~e~hd~~~~~~-----g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 126 TFSVHLDGLREHHDASVCRE-----GVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred EEEEEEecCchhhchhhcCC-----CcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 35566666666664321111 1234556666666677876433 2222 5788888899999988875
No 276
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=45.25 E-value=2.7e+02 Score=30.46 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred ccccCCHHHHHHHHHH-------HHHcCCCEE------------EEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 55 TCTNMPVEKIDHALQT-------IKSNGIQNV------------LALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 55 TCrd~n~~~L~~~L~~-------a~~~GIrNI------------LaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
++|-|++++|++.++. |+++|.+-| ++-..-.-+..++.-.-++......++|+.+|+.-|
T Consensus 135 ~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg 214 (363)
T COG1902 135 TPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVG 214 (363)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhC
Q ss_pred CceeEEEEecCCCC-CCCCCCCCCCCccchHHHHHHHHHHHH-cC-CcEE----------EeccCCCHHHHHHHHHHHHH
Q 008423 116 DYFGITVAGYPEGH-PDTIGPDGVASNESYQSDLLYLKKKVD-AG-ADLI----------ITQLFYDTDMFLKFVNDCRQ 182 (566)
Q Consensus 116 d~F~IGVAgyPEgH-pe~~~~~~~~~~~~~~~dl~~Lk~Kvd-AG-AdFi----------ITQlffD~d~f~~f~~~~R~ 182 (566)
.+|.||+=-.|..- ....... +|..++.+.++ +| .|++ -++.......+..|.+..+.
T Consensus 215 ~~~~vg~Rls~~d~~~~~g~~~---------~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~ 285 (363)
T COG1902 215 ADFPVGVRLSPDDFFDGGGLTI---------EEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKK 285 (363)
T ss_pred CCceEEEEECccccCCCCCCCH---------HHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHH
Q ss_pred cCCCCcEEe
Q 008423 183 IGITCPIVP 191 (566)
Q Consensus 183 ~Gi~vPIIp 191 (566)
... +|+|.
T Consensus 286 ~~~-~pvi~ 293 (363)
T COG1902 286 AVR-IPVIA 293 (363)
T ss_pred hcC-CCEEE
No 277
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.79 E-value=2.7e+02 Score=30.32 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
..+++...+.|.+|+++|++.|+ |+=|.|..+.
T Consensus 134 ~~d~~~~~~ll~rA~~aG~~alv-lTvD~p~~g~ 166 (351)
T cd04737 134 SKDDGFNRSLLDRAKAAGAKAII-LTADATVGGN 166 (351)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-EecCCCCCCc
Confidence 34778888999999999998776 6777665543
No 278
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=44.74 E-value=98 Score=32.94 Aligned_cols=100 Identities=8% Similarity=-0.007 Sum_probs=66.2
Q ss_pred hccCCCcCEEEecCCCC-CCCchhHHHHHHHHHhhcCCceeEEecccc---CCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 12 AWWPTTRHSATSRWGAG-GSTADLTLDIANRMQNTICVETMMHLTCTN---MPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgag-G~~~~~Sl~la~~lq~~~Gle~i~HLTCrd---~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
.+.......+.++.-.+ .-..+.+.+.++.+++ .|+.+..+.+... -|.+.|.+....+.++||+..-+-.-||.
T Consensus 198 ~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~-~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~ 276 (321)
T TIGR03821 198 LLANSRLQTVLVVHINHANEIDAEVADALAKLRN-AGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKV 276 (321)
T ss_pred HHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHH-cCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCC
Confidence 33333344554433221 2345667777777775 7998877766533 37889999999999999999988888887
Q ss_pred CCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 88 HGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 88 ~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
.+..++ .-....+.++++.+++...
T Consensus 277 gg~~~f---~v~~~~~~~i~~~l~~~~s 301 (321)
T TIGR03821 277 QGAAHF---DVDDERARALMAELLARLP 301 (321)
T ss_pred CCcccc---cCCHHHHHHHHHHHHHhCC
Confidence 654322 1223347888888887654
No 279
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.69 E-value=3.6e+02 Score=27.56 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=77.7
Q ss_pred ccccchhhccCCC----cCEEEecCCC--------CCCCchh----HHHHHHHHHhhcCCceeEEeccccC---CHHHHH
Q 008423 5 TCSSGWTAWWPTT----RHSATSRWGA--------GGSTADL----TLDIANRMQNTICVETMMHLTCTNM---PVEKID 65 (566)
Q Consensus 5 ~~~~~~~~~~~~~----p~fVsVTwga--------gG~~~~~----Sl~la~~lq~~~Gle~i~HLTCrd~---n~~~L~ 65 (566)
....+.++..+.. .+.|.|.... -+.+... ..++++.+++ .|++++ ++|-+. +.+.+.
T Consensus 70 ~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~--~~~~~~~~~~~~~~~ 146 (268)
T cd07940 70 AVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS-HGLDVE--FSAEDATRTDLDFLI 146 (268)
T ss_pred CCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEE--EeeecCCCCCHHHHH
Confidence 3455555555555 6666665432 1222232 3345556664 688776 555443 678888
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC-ceeEEEEecCCCCCCCCCCCCCCCccch
Q 008423 66 HALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD-YFGITVAGYPEGHPDTIGPDGVASNESY 144 (566)
Q Consensus 66 ~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd-~F~IGVAgyPEgHpe~~~~~~~~~~~~~ 144 (566)
+..+.+.++|++.|- | .|.... ..-....+||+.+|+.+++ ...||+-+ | ++..
T Consensus 147 ~~~~~~~~~G~~~i~-l-~DT~G~--------~~P~~v~~lv~~l~~~~~~~~i~l~~H~----H---n~~G-------- 201 (268)
T cd07940 147 EVVEAAIEAGATTIN-I-PDTVGY--------LTPEEFGELIKKLKENVPNIKVPISVHC----H---NDLG-------- 201 (268)
T ss_pred HHHHHHHHcCCCEEE-E-CCCCCC--------CCHHHHHHHHHHHHHhCCCCceeEEEEe----c---CCcc--------
Confidence 888899999998765 2 333211 1112378899999988864 14454443 3 1221
Q ss_pred HHHHHHHHHHHHcCCcEEEeccC
Q 008423 145 QSDLLYLKKKVDAGADLIITQLF 167 (566)
Q Consensus 145 ~~dl~~Lk~KvdAGAdFiITQlf 167 (566)
.-+....+=+++||+.|=|-+.
T Consensus 202 -lA~An~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 202 -LAVANSLAAVEAGARQVECTIN 223 (268)
T ss_pred -hHHHHHHHHHHhCCCEEEEEee
Confidence 3355555567889998755543
No 280
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=44.44 E-value=1.9e+02 Score=32.66 Aligned_cols=95 Identities=18% Similarity=0.299 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCc
Q 008423 62 EKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASN 141 (566)
Q Consensus 62 ~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~ 141 (566)
.++.+.+..+.+.|++-|.+ |...+ --....++|+.||+.|++-.-| |++= .+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~---D~a~g---------~~~~~~~~i~~i~~~~~~~~vi--~g~~------~t~------ 277 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI---DTAHG---------HQVKMISAIKAVRALDLGVPIV--AGNV------VSA------ 277 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE---eCCCC---------CcHHHHHHHHHHHHHCCCCeEE--Eecc------CCH------
Confidence 34556667777889888664 43331 1135789999999988653222 2211 111
Q ss_pred cchHHHHHHHHHHHHcCCcEEE----------eccCCC-----HHHHHHHHHHHHHcCCCCcEEe
Q 008423 142 ESYQSDLLYLKKKVDAGADLII----------TQLFYD-----TDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 142 ~~~~~dl~~Lk~KvdAGAdFiI----------TQlffD-----~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
+....| ++||||+|- |+.+-+ .....+..+.+++.| +|||+
T Consensus 278 ----~~~~~l---~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~--~~via 333 (475)
T TIGR01303 278 ----EGVRDL---LEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG--GHVWA 333 (475)
T ss_pred ----HHHHHH---HHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC--CcEEE
Confidence 334444 369999986 775543 445556666677664 77775
No 281
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=44.32 E-value=3.4e+02 Score=30.26 Aligned_cols=150 Identities=15% Similarity=0.019 Sum_probs=92.8
Q ss_pred hhccCCCcCEEE----ecCCCCCCCc---hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec
Q 008423 11 TAWWPTTRHSAT----SRWGAGGSTA---DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 11 ~~~~~~~p~fVs----VTwgagG~~~---~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
.+++.+..|||- +++.+-.... ....+....++++.|-.++.-.+.+.-+..++.+..+.+.++|..-+|+=
T Consensus 155 y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~- 233 (414)
T cd08206 155 YEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVMVD- 233 (414)
T ss_pred HHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEe-
Confidence 456677777752 1111211111 23556666777789987777777776668888888899999998666531
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
.+....+.++.+++.+.+ +.+-+-++|.+|.-. .+++ -.-+. .-+.+|-+= ||||.+
T Consensus 234 ---------------~~~~G~~~l~~l~~~~~~-~~l~ih~HrA~~ga~~~~~~---~Gis~-~vl~kl~RL--aGaD~i 291 (414)
T cd08206 234 ---------------GVTAGWTAIQSARRWCPD-NGLALHAHRAGHAAFTRQKN---HGISM-RVLAKLARL--IGVDHI 291 (414)
T ss_pred ---------------eecccHHHHHHHHHhccc-cCeEEEEccccceecccCCC---CcCcH-HHHHHHHHH--cCCCcc
Confidence 112234446777775543 567788899988431 1111 01122 124444443 799988
Q ss_pred Eec-----cCCCHHHHHHHHHHHHHc
Q 008423 163 ITQ-----LFYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 163 ITQ-----lffD~d~f~~f~~~~R~~ 183 (566)
++= +-++.+...++.+.||.-
T Consensus 292 h~~t~~Gk~~~~~~~~~~~~~~l~~~ 317 (414)
T cd08206 292 HTGTVVGKLEGDPSEVKGIADMLRED 317 (414)
T ss_pred ccCCCccCCCCCHHHHHHHHHHhhcc
Confidence 764 446888899999998863
No 282
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.13 E-value=3.8e+02 Score=28.75 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCcEEEeccC----------CCHHHHHHHHHHHHHcCC----CCcEEeeecccCCHHHHHHHhccCCC
Q 008423 146 SDLLYLKKKVDAGADLIITQLF----------YDTDMFLKFVNDCRQIGI----TCPIVPGIMPINNYKGFLRMTGFCKT 211 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlf----------fD~d~f~~f~~~~R~~Gi----~vPIIpGImPI~s~~~~~r~~~l~Gv 211 (566)
+|..++.+|+..+||++.-++. .+.+.+.+.++.+|+.=- ++||++=|-|-.+
T Consensus 157 ~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~------------- 223 (344)
T PRK05286 157 DDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLS------------- 223 (344)
T ss_pred HHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCC-------------
Confidence 6889999999888999988763 367788888888887421 2666655543211
Q ss_pred CCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEc
Q 008423 212 KIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYT 258 (566)
Q Consensus 212 ~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyT 258 (566)
+ +-..++++.+.+.|++||.+..
T Consensus 224 ----------------~--------~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 224 ----------------D--------EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred ----------------H--------HHHHHHHHHHHHhCCcEEEEeC
Confidence 1 1134677888888999998864
No 283
>TIGR03586 PseI pseudaminic acid synthase.
Probab=43.93 E-value=2.5e+02 Score=30.19 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHc
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAY 114 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~ 114 (566)
.+.+...+-+ .|.++++ +.--.+.+++..++....+.|..+|.+|-+- . .++ ....+.-+.-|..+++.+
T Consensus 123 n~~LL~~va~-~gkPvil--stG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~--s--~YP---~~~~~~nL~~i~~lk~~f 192 (327)
T TIGR03586 123 DLPLIRYVAK-TGKPIIM--STGIATLEEIQEAVEACREAGCKDLVLLKCT--S--SYP---APLEDANLRTIPDLAERF 192 (327)
T ss_pred CHHHHHHHHh-cCCcEEE--ECCCCCHHHHHHHHHHHHHCCCCcEEEEecC--C--CCC---CCcccCCHHHHHHHHHHh
Confidence 3455555554 6888874 3322488999999999999999888777642 1 121 111122344466778777
Q ss_pred CCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 115 GDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 115 gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
+ .-||... |... +.-...=+.+||++|
T Consensus 193 ~--~pVG~SD----Ht~G---------------~~~~~aAva~GA~iI 219 (327)
T TIGR03586 193 N--VPVGLSD----HTLG---------------ILAPVAAVALGACVI 219 (327)
T ss_pred C--CCEEeeC----CCCc---------------hHHHHHHHHcCCCEE
Confidence 4 5666654 5321 233455667899855
No 284
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=43.91 E-value=1.3e+02 Score=34.19 Aligned_cols=116 Identities=10% Similarity=0.110 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHH------HHHcCCceeEEEEecCCCCCCCCCC
Q 008423 62 EKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHI------RSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 62 ~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~I------r~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
..+.+++....+.+++.+.++..+..- .| .-.-.||++.. +...| .+.+|+|.....
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~l--------iG-IIT~~DIl~~~~~p~a~~D~~G-rL~Vgaavg~~~------- 240 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGEL--------VA-LVSRSDLKKNRGYPNASLDSNG-QLLVGAAISTRP------- 240 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcE--------EE-EEEehHhhhcccCchhhhccCC-CEEEEEEECCCH-------
Confidence 345667777788899988887544311 11 11233444331 22233 478888875521
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccC-CCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLF-YDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf-fD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
.+++++++=++||+|+|.--.- -+.....+.++.+|+.-.++||++| -+.|.+..+.+.
T Consensus 241 ----------~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG--~V~t~~~a~~~~ 300 (495)
T PTZ00314 241 ----------EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAG--NVVTADQAKNLI 300 (495)
T ss_pred ----------HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEEC--CcCCHHHHHHHH
Confidence 4588899999999999884332 1222235667778876447899997 567777666544
No 285
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=43.44 E-value=2.5e+02 Score=27.06 Aligned_cols=170 Identities=17% Similarity=0.097 Sum_probs=79.1
Q ss_pred CcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHH----HcCCCEEEEecCCCCCCCCC
Q 008423 17 TRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIK----SNGIQNVLALRGDPPHGQDK 92 (566)
Q Consensus 17 ~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~----~~GIrNILaLrGDpp~~~~~ 92 (566)
.|..+-||....... ..-.+.++.+.+ .|++. .|+...+.+...+...+.... ..|+. ++ +..+...-.+.
T Consensus 6 ~~~~~~it~~~~~~~-~~~~~~~~~~~~-~gv~~-v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~~~a~~~ 80 (212)
T PRK00043 6 LLRLYLITDSRDDSG-RDLLEVVEAALE-GGVTL-VQLREKGLDTRERLELARALKELCRRYGVP-LI-VNDRVDLALAV 80 (212)
T ss_pred CCCEEEEECCccccc-ccHHHHHHHHHh-cCCCE-EEEeCCCCCHHHHHHHHHHHHHHHHHhCCe-EE-EeChHHHHHHc
Confidence 344555665432111 223334444443 47765 599988887655555544433 44543 22 32211100000
Q ss_pred ccccCCCccc-HHHH-HHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCH
Q 008423 93 FVQIQGGFAC-ALDL-VKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDT 170 (566)
Q Consensus 93 ~~~~~~~F~~-A~dL-Vk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~ 170 (566)
... .+.. +.++ +..+++..+....+|++++ + ...+++-.+.|||++..-.+|..
T Consensus 81 --gad-~vh~~~~~~~~~~~~~~~~~~~~~g~~~~--------t-------------~~e~~~a~~~gaD~v~~~~~~~~ 136 (212)
T PRK00043 81 --GAD-GVHLGQDDLPVADARALLGPDAIIGLSTH--------T-------------LEEAAAALAAGADYVGVGPIFPT 136 (212)
T ss_pred --CCC-EEecCcccCCHHHHHHHcCCCCEEEEeCC--------C-------------HHHHHHHhHcCCCEEEECCccCC
Confidence 011 1111 1111 2344444444467888762 1 11234445789999988788763
Q ss_pred H-------HH-HHHHHHHHHcCCCCcEE--eeecccCCHHHHHHHh--ccCCCCCCHHHHH
Q 008423 171 D-------MF-LKFVNDCRQIGITCPIV--PGIMPINNYKGFLRMT--GFCKTKIPAEITA 219 (566)
Q Consensus 171 d-------~f-~~f~~~~R~~Gi~vPII--pGImPI~s~~~~~r~~--~l~Gv~VP~~il~ 219 (566)
. .. .+.++.+++.--++||+ -||- ...+..+. -..|+.+-..+.+
T Consensus 137 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~----~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 137 PTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGIT----PENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcC----HHHHHHHHHcCCCEEEEeHHhhc
Confidence 2 11 23333333322137764 3553 34444333 3556666666653
No 286
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=43.32 E-value=2.8e+02 Score=25.88 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=33.9
Q ss_pred HHHHHHcCCcEEEeccCCCH--------HHHHHHHHHHHHcCCCCcEEe--eecccCCHHHHHHHhccCCCCCCHHHH
Q 008423 151 LKKKVDAGADLIITQLFYDT--------DMFLKFVNDCRQIGITCPIVP--GIMPINNYKGFLRMTGFCKTKIPAEIT 218 (566)
Q Consensus 151 Lk~KvdAGAdFiITQlffD~--------d~f~~f~~~~R~~Gi~vPIIp--GImPI~s~~~~~r~~~l~Gv~VP~~il 218 (566)
+++-.++|+|++.--.+|.. ..-.+.++++++. .++||++ ||.+ .+.+.+.. +..-|+.+-..+.
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~-~~i~~~~~-~Ga~~i~~g~~i~ 182 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITP-ENAAEVLA-AGADGVAVISAIT 182 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCH-HHHHHHHH-cCCCEEEEehHhh
Confidence 44556689999976555532 1112333444443 4678754 6653 44444433 2345555665654
No 287
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=43.11 E-value=42 Score=37.26 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEecccc-CCHHHHHHHHHHHHHcCCCEE
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTN-MPVEKIDHALQTIKSNGIQNV 79 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd-~n~~~L~~~L~~a~~~GIrNI 79 (566)
..++....+|.|.|-+.+|-.+....-++++.+++.+++++-.|--|+. +... .+..|.++|++-|
T Consensus 162 akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m----~ylkAvEAGvD~i 228 (472)
T COG5016 162 AKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEM----TYLKAVEAGVDGI 228 (472)
T ss_pred HHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHH----HHHHHHHhCcchh
Confidence 3567778889999999999998899999999999999999999977752 2322 3455677888655
No 288
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=43.09 E-value=4.4e+02 Score=28.03 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC----Ccc-----ccCCCcccHHH
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD----KFV-----QIQGGFACALD 105 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~----~~~-----~~~~~F~~A~d 105 (566)
..++.+.+++...++++.-|+- + ...+.+....+.++|++.|.+.-.=+...-+ .+. ..+..+..+.+
T Consensus 151 ~~eiv~~v~~~~~iPv~vKl~p-~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~ 227 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKLSP-F--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLR 227 (325)
T ss_pred HHHHHHHHHhccCCCEEEEcCC-C--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHH
Confidence 4567777776667777777764 2 2356666777788899988764421111100 000 01223445777
Q ss_pred HHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccCC-CHHHHHHHHHHHH
Q 008423 106 LVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLFY-DTDMFLKFVNDCR 181 (566)
Q Consensus 106 LVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlff-D~d~f~~f~~~~R 181 (566)
.|+.+++...- --||+.|.-. -+-..+++.+||+. +-|.+++ +++.+.+..+.+.
T Consensus 228 ~v~~v~~~~~i-pIig~GGI~s--------------------~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 285 (325)
T cd04739 228 WIAILSGRVKA-SLAASGGVHD--------------------AEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLE 285 (325)
T ss_pred HHHHHHcccCC-CEEEECCCCC--------------------HHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHH
Confidence 77777764421 2344443221 12234555699996 5688888 4777766555544
No 289
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=42.67 E-value=3.4e+02 Score=26.71 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=67.6
Q ss_pred CEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHH
Q 008423 77 QNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVD 156 (566)
Q Consensus 77 rNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd 156 (566)
++|++|.||-+... +...+..+..++.++++ +|-..-|...|+|-+.|+.. +. +.-+.+-+..++.|+.
T Consensus 15 ~~illl~g~e~~~~-----p~~~~e~a~~vld~a~~-~gv~~iitLgG~~~~~~~tr-p~-V~~~at~~el~~~l~~--- 83 (188)
T TIGR00162 15 TDLIILVGNTQSLS-----PEGQYELVNAIIDVAKK-YGARMIYTLGGYGVGKLVEE-PY-VYGAATSPELVEELKE--- 83 (188)
T ss_pred CCEEEEEcCCCCCC-----hhhHHHHHHHHHHHHHH-cCCCEEEEecCCcCCCCCCC-Cc-eEEEeCCHHHHHHHHh---
Confidence 78999999974321 12344567888888764 66667788888887744421 00 0000111133444432
Q ss_pred cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeec------ccCCHHHHHHHhccCCCCCCHH
Q 008423 157 AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIM------PINNYKGFLRMTGFCKTKIPAE 216 (566)
Q Consensus 157 AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm------PI~s~~~~~r~~~l~Gv~VP~~ 216 (566)
.|..+- ...-+=.-..--++..|+.+|++.=-+.|=. |-.+..-+..+.++.|+.||-+
T Consensus 84 ~g~~~~-~~~g~i~G~~glLl~~a~~~gi~ai~L~~e~p~y~pDP~AA~alL~~L~kllgl~vd~~ 148 (188)
T TIGR00162 84 HGVKFR-EPGGGIIGASGLLLGVSELEGIPGACLMGETPGYMIDPKAAKAVLEVLCKMLSLEVSVE 148 (188)
T ss_pred cCCeee-cCCCccccHHHHHHHHHHHCCCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHCCCCCHH
Confidence 344321 1111112333446778899997632222222 2233335556678889999954
No 290
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=42.58 E-value=2.6e+02 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.5
Q ss_pred HcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 156 DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 156 dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
++++|.|+....... ...|++.+++.|++.+++.
T Consensus 185 ~~~pd~v~~~~~~~~--~~~~~~~~~~~G~~~~~~~ 218 (333)
T cd06358 185 ASGADAVLSTLVGQD--AVAFNRQFAAAGLRDRILR 218 (333)
T ss_pred HcCCCEEEEeCCCCc--hHHHHHHHHHcCCCccCce
Confidence 368899988766543 2478999999999887653
No 291
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=42.32 E-value=5.3e+02 Score=28.76 Aligned_cols=149 Identities=11% Similarity=0.007 Sum_probs=89.6
Q ss_pred hhccCCCcCEEEecC-------CCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec
Q 008423 11 TAWWPTTRHSATSRW-------GAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 11 ~~~~~~~p~fVsVTw-------gagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
.+++.+..|||-=.- .+.-..-...++....++++.|-.++.-++.++-.. ++.+..+.+.+.|..-+++=
T Consensus 162 y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~-em~~ra~~a~~~G~~~~mv~- 239 (407)
T TIGR03332 162 RQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTGRTF-DLKDKAKRAAELGADVLLFN- 239 (407)
T ss_pred HHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCCCHH-HHHHHHHHHHHhCCCEEEEe-
Confidence 466777777762211 111111134667777788888988877777776655 58888888999999777631
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
+. ..+| +-++.+++.. ++.+-+-++|.+|.-. .+++ -.-+...-+.+|-+= +|||.+
T Consensus 240 --~~---------~~G~----~~~~~l~~~~--~~~lpihaHra~~ga~~r~~~---~Gis~~~~l~kl~RL--aGaD~~ 297 (407)
T TIGR03332 240 --VF---------AYGL----DVLQSLAEDD--EIPVPIMAHPAVSGAYTSSPF---YGFSHSLLLGKLLRY--AGADFS 297 (407)
T ss_pred --cc---------ccCh----HHHHHHHhcC--CCCcEEEEecCcccccccCCC---CcccHHHHHHHHHHh--cCcCcc
Confidence 11 1233 3366666531 2445567888888431 1111 000111234444443 799988
Q ss_pred Eec-----cCCCHHHHHHHHHHHHHc
Q 008423 163 ITQ-----LFYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 163 ITQ-----lffD~d~f~~f~~~~R~~ 183 (566)
++= +-|+.+...++.+.||.-
T Consensus 298 ~~~~~~Gk~~~~~~~~~~~~~~~~~p 323 (407)
T TIGR03332 298 LFPSPYGSVALEREDALAISKELTED 323 (407)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHhcc
Confidence 774 556889999999999974
No 292
>PRK13866 plasmid partitioning protein RepB; Provisional
Probab=42.30 E-value=1.5e+02 Score=32.25 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCC------------cEEEeccCCC-HHHHHHHHHHHHHcCCCCcEEeeeccc--------CCHHHHHHH
Q 008423 147 DLLYLKKKVDAGA------------DLIITQLFYD-TDMFLKFVNDCRQIGITCPIVPGIMPI--------NNYKGFLRM 205 (566)
Q Consensus 147 dl~~Lk~KvdAGA------------dFiITQlffD-~d~f~~f~~~~R~~Gi~vPIIpGImPI--------~s~~~~~r~ 205 (566)
+...|++++..|- +++.=.+-+| .+.|.++.+.++++|+..||+.--.|- ...+.++ .
T Consensus 51 ~~~~l~~~l~~g~~v~eid~~~I~~s~~~dRl~~d~d~~~~eL~~SI~~~Gq~~PIlVRp~p~~~grY~li~G~RR~r-A 129 (336)
T PRK13866 51 AAARLQDQLAAGEAVVSLDPSMIDGSPIADRLPADVDPKFEQLEASISQEGQQVPILVRPHPEAAGRYQIVYGRRRLR-A 129 (336)
T ss_pred HHHHHHHHHhCCCeEEEeCHHHccCCcCCCCcCCCccHHHHHHHHHHHHhCCcCCeEEEECCCCCCCEEEEecHHHHH-H
Confidence 4667777787774 3444445555 368999999999999999998755443 2333332 3
Q ss_pred hccCCCCCCH
Q 008423 206 TGFCKTKIPA 215 (566)
Q Consensus 206 ~~l~Gv~VP~ 215 (566)
++..|..||.
T Consensus 130 ~~~lg~~v~A 139 (336)
T PRK13866 130 AVNLRREVSA 139 (336)
T ss_pred HHHcCCCCCE
Confidence 5788888883
No 293
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=42.25 E-value=2.7e+02 Score=29.38 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=39.7
Q ss_pred CCcEEeeec---ccCCHHHHHHHhc---cCCCC-CC------HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 186 TCPIVPGIM---PINNYKGFLRMTG---FCKTK-IP------AEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 186 ~vPIIpGIm---PI~s~~~~~r~~~---l~Gv~-VP------~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
+.||++||. |..+...|..-.+ ++||. .| -.+.+.||... .|.+.=+||++...+.|.-
T Consensus 81 ~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G--------mgy~~EVemi~~A~~~gl~ 152 (268)
T PF09370_consen 81 DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETG--------MGYDREVEMIRKAHEKGLF 152 (268)
T ss_dssp SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT----------HHHHHHHHHHHHHTT-E
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcC--------CCHHHHHHHHHHHHHCCCe
Confidence 689999998 4555544443222 44432 33 45666665432 3667778999999887621
Q ss_pred eEEEEcCCchHHHHHHHH
Q 008423 253 TLHLYTLNMEKSALAILL 270 (566)
Q Consensus 253 GiHfyTlN~e~~v~~IL~ 270 (566)
-+ =|.+|.+++..+.--
T Consensus 153 T~-~yvf~~e~A~~M~~A 169 (268)
T PF09370_consen 153 TT-AYVFNEEQARAMAEA 169 (268)
T ss_dssp E---EE-SHHHHHHHHHH
T ss_pred ee-eeecCHHHHHHHHHc
Confidence 11 145677777666633
No 294
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=42.13 E-value=2e+02 Score=29.30 Aligned_cols=100 Identities=24% Similarity=0.380 Sum_probs=58.5
Q ss_pred HHHHHHHHHH-HHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCC
Q 008423 62 EKIDHALQTI-KSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 62 ~~L~~~L~~a-~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~ 140 (566)
......+..+ +..|+++|.++..|.+.+ -..+..+.+.+++ .|.. -++...||.+-
T Consensus 120 ~~~~~~~~~~~~~~g~~~v~iv~~~~~~g----------~~~~~~~~~~~~~-~G~~-vv~~~~~~~~~----------- 176 (343)
T PF13458_consen 120 QQAAALAEYLAKKLGAKKVAIVYPDDPYG----------RSLAEAFRKALEA-AGGK-VVGEIRYPPGD----------- 176 (343)
T ss_dssp HHHHHHHHHHHHTTTTSEEEEEEESSHHH----------HHHHHHHHHHHHH-TTCE-EEEEEEE-TTS-----------
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCchhh----------hHHHHHHHHHHhh-cCce-eccceeccccc-----------
Confidence 3444445543 458999999998663311 0112233344443 3422 33566667442
Q ss_pred ccchHHHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 141 NESYQSDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 141 ~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
.+...+.+++. +|+|.|+.+. +......|++.+++.|.+.|.++
T Consensus 177 -----~d~~~~~~~l~~~~~d~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 221 (343)
T PF13458_consen 177 -----TDFSALVQQLKSAGPDVVVLAG--DPADAAAFLRQLRQLGLKPPRIP 221 (343)
T ss_dssp -----SHHHHHHHHHHHTTTSEEEEES--THHHHHHHHHHHHHTTGCSCTEE
T ss_pred -----ccchHHHHHHhhcCCCEEEEec--cchhHHHHHHHHHhhccccccce
Confidence 12333333333 4899987766 78888899999999998876333
No 295
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.08 E-value=3.4e+02 Score=26.50 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=66.4
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
.|..+.+.....++.+.+.|++-|= +|=..+ .+.++++.+++.++. ..+|.+. .
T Consensus 18 ~r~~~~~~~~~~~~~~~~~Gv~~vq-lr~k~~--------------~~~e~~~~~~~~~~~-~~~g~gt-v--------- 71 (187)
T PRK07455 18 IRAPDLELGLQMAEAVAAGGMRLIE-ITWNSD--------------QPAELISQLREKLPE-CIIGTGT-I--------- 71 (187)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEE-EeCCCC--------------CHHHHHHHHHHhCCC-cEEeEEE-E---------
Confidence 4566888999999999999997654 541111 367788888876652 2355432 1
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r 204 (566)
-..+++..=+++||||+++=- +|.+. ++.|+.+++ +.+|| +.|...+.+
T Consensus 72 ----------l~~d~~~~A~~~gAdgv~~p~-~~~~~----~~~~~~~~~--~~i~G---~~t~~e~~~ 120 (187)
T PRK07455 72 ----------LTLEDLEEAIAAGAQFCFTPH-VDPEL----IEAAVAQDI--PIIPG---ALTPTEIVT 120 (187)
T ss_pred ----------EcHHHHHHHHHcCCCEEECCC-CCHHH----HHHHHHcCC--CEEcC---cCCHHHHHH
Confidence 113455555679999998854 44444 345666664 78899 567766554
No 296
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=41.96 E-value=40 Score=34.03 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCcE-EEeccCCCHHHHHHHHHHHH
Q 008423 147 DLLYLKKKVDAGADL-IITQLFYDTDMFLKFVNDCR 181 (566)
Q Consensus 147 dl~~Lk~KvdAGAdF-iITQlffD~d~f~~f~~~~R 181 (566)
.+...++=+++|||+ +|=..+|..+.=.+-.+.++
T Consensus 189 ~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~ 224 (230)
T PRK00230 189 RVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAIL 224 (230)
T ss_pred HHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHH
Confidence 344466666799998 66777775555444444444
No 297
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=41.79 E-value=2.5e+02 Score=30.81 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
..+++...+.|++|+++|++.|+ |+=|.|..+.
T Consensus 142 ~~dr~~~~~li~RA~~aG~~alv-lTvD~p~~g~ 174 (367)
T TIGR02708 142 SKDDGINRDIMDRVKADGAKAIV-LTADATVGGN 174 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-EecCCCCCCc
Confidence 45677778999999999998776 7788775543
No 298
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=41.79 E-value=1.6e+02 Score=29.42 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEe-cCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAG-YPEGHPDTIGPDGV 138 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAg-yPEgHpe~~~~~~~ 138 (566)
+...|.+.++++.++|+..+-+=--|-. + ...+....+.|+.||+...-.+.+-... +|
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~-----f---vpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P------------ 69 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGH-----F---VPNLTFGPDIIKAIRKITDLPLDVHLMVENP------------ 69 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSS-----S---SSSB-B-HHHHHHHHTTSSSEEEEEEESSSG------------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccc-----c---CCcccCCHHHHHHHhhcCCCcEEEEeeeccH------------
Confidence 5567889999999999998875433421 1 2345668999999997643234443332 22
Q ss_pred CCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeec--ccCCHHHHHHH
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIM--PINNYKGFLRM 205 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm--PI~s~~~~~r~ 205 (566)
..++++=.++||+.|..++= ..+...++++.+|++|+. +||. |-++...+..+
T Consensus 70 ---------~~~i~~~~~~g~~~i~~H~E-~~~~~~~~i~~ik~~g~k----~GialnP~T~~~~~~~~ 124 (201)
T PF00834_consen 70 ---------ERYIEEFAEAGADYITFHAE-ATEDPKETIKYIKEAGIK----AGIALNPETPVEELEPY 124 (201)
T ss_dssp ---------GGHHHHHHHHT-SEEEEEGG-GTTTHHHHHHHHHHTTSE----EEEEE-TTS-GGGGTTT
T ss_pred ---------HHHHHHHHhcCCCEEEEccc-chhCHHHHHHHHHHhCCC----EEEEEECCCCchHHHHH
Confidence 23455556899998888776 556677899999999954 4443 55555544443
No 299
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=41.67 E-value=2.2e+02 Score=31.73 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHH-----HcCCceeEEEEecCCCCCCCCCCCC
Q 008423 63 KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRS-----AYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~-----~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
.+.+.+....+.+++.++++..+-. --+.-...|+++.+.. .....+.+|+|.-...
T Consensus 162 sl~eal~~m~~~~~~~lpVVDe~G~---------lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~--------- 223 (450)
T TIGR01302 162 DLEEALKVLHEHRIEKLPVVDKNGE---------LVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTRE--------- 223 (450)
T ss_pred cHHHHHHHHHHcCCCeEEEEcCCCc---------EEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCch---------
Confidence 3556667777888888887753211 1122235566554421 0122466777664422
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEeccC-CCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIITQLF-YDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf-fD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
.+++++++=++||+|+|.-..- -+.....+.++.+|+.-.++||++|= +.|....+.+.
T Consensus 224 --------~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~--v~t~~~a~~l~ 283 (450)
T TIGR01302 224 --------FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN--VATAEQAKALI 283 (450)
T ss_pred --------hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe--CCCHHHHHHHH
Confidence 4578888888999998864442 25677888899998875579999853 55666555443
No 300
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.56 E-value=1.9e+02 Score=31.91 Aligned_cols=125 Identities=18% Similarity=0.361 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-CCCCccccCCCcccHHHHHHHHHHHcCCceeEE-EEecCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPH-GQDKFVQIQGGFACALDLVKHIRSAYGDYFGIT-VAGYPEGHPDTIG 134 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~-~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IG-VAgyPEgHpe~~~ 134 (566)
|.++.+.+.+.++.+.+.|++.|..+ |+... -+.. .... ..-.+|++.+.+..+. ..+- ...||....
T Consensus 167 rsr~~e~Iv~Ei~~l~~~g~kei~l~-~~n~~~yg~~---~~~~-~~l~~Ll~~~~~~~~~-~~~~~~~~~p~~~~---- 236 (434)
T PRK14330 167 KSRPMEDILEEVEKLAKQGYREVTFL-GQNVDAYGKD---LKDG-SSLAKLLEEASKIEGI-ERIWFLTSYPTDFS---- 236 (434)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEE-EecccccccC---CCCC-ccHHHHHHHHHhcCCc-eEEEEecCChhhcC----
Confidence 44577888888888888899998765 44321 1100 0001 1245566655443332 2222 235554321
Q ss_pred CCCCCCccchHHHHHHHHHHH-----------HcCCcEEEecc--CCCHHHHHHHHHHHHHcCCCC----cEEeeecccC
Q 008423 135 PDGVASNESYQSDLLYLKKKV-----------DAGADLIITQL--FYDTDMFLKFVNDCRQIGITC----PIVPGIMPIN 197 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~Kv-----------dAGAdFiITQl--ffD~d~f~~f~~~~R~~Gi~v----PIIpGImPI~ 197 (566)
.++..+.++. +.|.+-+.-+| -|+.+.+.+.++.+|+++..+ -+|.|. |=.
T Consensus 237 -----------~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGf-PgE 304 (434)
T PRK14330 237 -----------DELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGF-PTE 304 (434)
T ss_pred -----------HHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEEC-CCC
Confidence 2222222221 11111111122 368889999999999873223 356665 445
Q ss_pred CHHHHH
Q 008423 198 NYKGFL 203 (566)
Q Consensus 198 s~~~~~ 203 (566)
+...|.
T Consensus 305 T~edf~ 310 (434)
T PRK14330 305 TEEDFM 310 (434)
T ss_pred CHHHHH
Confidence 555444
No 301
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=41.32 E-value=3.7e+02 Score=34.53 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC----------CCHHH
Q 008423 148 LLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK----------IPAEI 217 (566)
Q Consensus 148 l~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~----------VP~~i 217 (566)
.+.+++=+ ++||+|+.=++|+-+......+.+. +++.+.++ .|...+++++++=+.. .|..+
T Consensus 113 ~~~~~~ai-~~ad~~~~sl~f~~~~~~~~~~~l~----~~~~~~~~---~s~~e~m~ltr~G~f~m~~~~~~~~~g~~~~ 184 (1353)
T PLN03241 113 RERFAAAL-DGADVFFGSLLFDYDQVEWLRARLE----KVPPRLVF---ESALELMSCNSVGSFSMKAAPGGKKAGPPPA 184 (1353)
T ss_pred HHHHHHHH-hcCCEEEEeccCcHHHHHHHHHHHh----cCCeEEEe---cChHHHHhhhcccceecccccCCCcccchHH
Confidence 44555555 7999999999999999877777774 34444443 3666666555543333 34566
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 218 TAALEPI-KDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 218 l~~Le~~-kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
++++.+- ....++-+..|.--..++..+++.. ++
T Consensus 185 ~k~~~~~~~~g~~~~~~~~~~~~~~~~pk~lk~-iP 219 (1353)
T PLN03241 185 VKAVLSKFGSGKEEDKLVGYLSFLKIGPALLKF-VP 219 (1353)
T ss_pred HHHHHhhcCCCcchhhHHHHHHHHHhhhhhhcc-CC
Confidence 6666432 2222222334554455555555554 44
No 302
>PLN02334 ribulose-phosphate 3-epimerase
Probab=41.17 E-value=3.8e+02 Score=26.75 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=68.4
Q ss_pred eeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCC
Q 008423 50 TMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGH 129 (566)
Q Consensus 50 ~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgH 129 (566)
..+-+-|. +...+.+.|+.+.+.|++.|-. |--. +. + ...+....++++.+|+....+ ++| |
T Consensus 10 i~~s~~~~--~~~~l~~~l~~~~~~g~~~ihl---d~~d-~~-f---~~~~~~g~~~~~~l~~~~~~~--~~v------h 71 (229)
T PLN02334 10 IAPSILSA--DFANLAEEAKRVLDAGADWLHV---DVMD-GH-F---VPNLTIGPPVVKALRKHTDAP--LDC------H 71 (229)
T ss_pred EEeehhhc--CHHHHHHHHHHHHHcCCCEEEE---eccc-CC-c---CCccccCHHHHHHHHhcCCCc--EEE------E
Confidence 34444443 4356888999999999998886 3222 11 1 122333458888898753322 222 2
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC-CHHHHHHHHHHHHHcCCCCcEEeeeccc--CCHHHHHHH
Q 008423 130 PDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY-DTDMFLKFVNDCRQIGITCPIVPGIMPI--NNYKGFLRM 205 (566)
Q Consensus 130 pe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff-D~d~f~~f~~~~R~~Gi~vPIIpGImPI--~s~~~~~r~ 205 (566)
--..++ . .++..-.++|||.+.-.+-= ..+...+.++.++..|. ++|+.-- +....+..+
T Consensus 72 lmv~~p----------~--d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~----~iGls~~~~t~~~~~~~~ 134 (229)
T PLN02334 72 LMVTNP----------E--DYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGM----KAGVVLNPGTPVEAVEPV 134 (229)
T ss_pred eccCCH----------H--HHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCC----eEEEEECCCCCHHHHHHH
Confidence 222222 1 23334467899988665551 23566788888888884 4555532 444444433
No 303
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=41.02 E-value=3.2e+02 Score=25.93 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGH 129 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgH 129 (566)
.++.+++.+.|..+. ..++.|..-.|+|.-. . .-.+|++++++ .| +.+ ...++|.
T Consensus 46 ~~~~~~i~~~i~~~~-~~~~~i~~sGGEPll~----------~-~l~~li~~~~~-~g--~~v--~i~TNg~ 100 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQ-GLIDGVVITGGEPTLQ----------A-GLPDFLRKVRE-LG--FEV--KLDTNGS 100 (191)
T ss_pred cCCHHHHHHHHHHhc-CCCCeEEEECCcccCc----------H-hHHHHHHHHHH-CC--CeE--EEEeCCC
Confidence 467788888877653 2377877666666421 1 25688888876 44 333 3444553
No 304
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=41.01 E-value=1.6e+02 Score=30.20 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE-ecCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLA-LRGDPP 87 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILa-LrGDpp 87 (566)
+.+++.+.+..+++.|++.+.. ..|-.+
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~ 91 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGP 91 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCC
Confidence 4566666777778899999754 444443
No 305
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=41.00 E-value=4.9e+02 Score=28.15 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH--cCCcEEEeccCCCHHHHHHHHHHHHHcCCC
Q 008423 146 SDLLYLKKKVD--AGADLIITQLFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 146 ~dl~~Lk~Kvd--AGAdFiITQlffD~d~f~~f~~~~R~~Gi~ 186 (566)
.++....+|+. .+|+.||. +-..+....+++++++.|++
T Consensus 216 ~d~~~~l~~l~~~~~a~viil--~~~~~~~~~~~~~a~~~g~~ 256 (452)
T cd06362 216 EEFDNIIRKLLSKPNARVVVL--FCREDDIRGLLAAAKRLNAE 256 (452)
T ss_pred HHHHHHHHHHhhcCCCeEEEE--EcChHHHHHHHHHHHHcCCc
Confidence 44555555543 47888874 44557778899999999975
No 306
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=40.95 E-value=4.1e+02 Score=29.52 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=54.3
Q ss_pred CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC--CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHH
Q 008423 75 GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG--DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLK 152 (566)
Q Consensus 75 GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g--d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk 152 (566)
.|+.|..-.|.|..-. -..-..|++.|++.++ ....|.+-+.|+.- +. +.++.|+
T Consensus 114 ~i~~iy~GGGTPs~L~---------~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~----t~----------e~l~~l~ 170 (449)
T PRK09058 114 PIHAVYFGGGTPTALS---------AEDLARLITALREYLPLAPDCEITLEGRINGF----DD----------EKADAAL 170 (449)
T ss_pred eeeEEEECCCccccCC---------HHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcC----CH----------HHHHHHH
Confidence 3666665555554211 1134667777887654 22356666666542 11 2333333
Q ss_pred HHHHcCCcEE--Eecc-----------CCCHHHHHHHHHHHHHcC-C--CCcEEeeecccCCHHHH
Q 008423 153 KKVDAGADLI--ITQL-----------FYDTDMFLKFVNDCRQIG-I--TCPIVPGIMPINNYKGF 202 (566)
Q Consensus 153 ~KvdAGAdFi--ITQl-----------ffD~d~f~~f~~~~R~~G-i--~vPIIpGImPI~s~~~~ 202 (566)
++|.+.| =-|= .++.+...+-++.+++.| + .+-+|.|+ |=+|.+++
T Consensus 171 ---~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl-PgqT~e~~ 232 (449)
T PRK09058 171 ---DAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL-PGQTPEIW 232 (449)
T ss_pred ---HcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC-CCCCHHHH
Confidence 4788754 1122 356777777888888887 3 23446665 45554443
No 307
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.90 E-value=5e+02 Score=28.05 Aligned_cols=135 Identities=10% Similarity=-0.006 Sum_probs=77.8
Q ss_pred cccccchhhccCCCcCEEEecCCCC--------CCCchhHH----HHHHHHHhhcCCceeEEeccccC-CHHHHHHHHHH
Q 008423 4 RTCSSGWTAWWPTTRHSATSRWGAG--------GSTADLTL----DIANRMQNTICVETMMHLTCTNM-PVEKIDHALQT 70 (566)
Q Consensus 4 ~~~~~~~~~~~~~~p~fVsVTwgag--------G~~~~~Sl----~la~~lq~~~Gle~i~HLTCrd~-n~~~L~~~L~~ 70 (566)
|...++..+.+....+.|.|--... +.+++..+ ++++.+++ .|+.+...+....+ +.+.+.+....
T Consensus 72 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~-~g~~v~~~~ed~~r~~~~~l~~~~~~ 150 (365)
T TIGR02660 72 RARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD-RGLFVSVGGEDASRADPDFLVELAEV 150 (365)
T ss_pred CCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh-CCCEEEEeecCCCCCCHHHHHHHHHH
Confidence 4566777777777777666654321 22333333 55556664 68887755443333 46778888888
Q ss_pred HHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHH
Q 008423 71 IKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLY 150 (566)
Q Consensus 71 a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~ 150 (566)
+.++|++.|- | -|-... ..-....+||+.+++.++ ..|++-++-. .. .-+..
T Consensus 151 ~~~~Ga~~i~-l-~DT~G~--------~~P~~v~~lv~~l~~~~~--v~l~~H~HNd-------~G---------lA~AN 202 (365)
T TIGR02660 151 AAEAGADRFR-F-ADTVGI--------LDPFSTYELVRALRQAVD--LPLEMHAHND-------LG---------MATAN 202 (365)
T ss_pred HHHcCcCEEE-E-cccCCC--------CCHHHHHHHHHHHHHhcC--CeEEEEecCC-------CC---------hHHHH
Confidence 8899998754 2 222111 011136788999987764 3455544221 11 23455
Q ss_pred HHHHHHcCCcEEEeccC
Q 008423 151 LKKKVDAGADLIITQLF 167 (566)
Q Consensus 151 Lk~KvdAGAdFiITQlf 167 (566)
...=++|||+.|=+-+.
T Consensus 203 alaA~~aGa~~vd~tl~ 219 (365)
T TIGR02660 203 TLAAVRAGATHVNTTVN 219 (365)
T ss_pred HHHHHHhCCCEEEEEee
Confidence 55557888887765543
No 308
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=40.46 E-value=2.9e+02 Score=31.44 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHc--------CCceeEEEEecCCCCCCCC
Q 008423 62 EKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAY--------GDYFGITVAGYPEGHPDTI 133 (566)
Q Consensus 62 ~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~--------gd~F~IGVAgyPEgHpe~~ 133 (566)
+.+.+++....+.++..+.++..+.. .. +.-.-.|+++.+..-. ...+.+|+|.-+..
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~--------Lv-GvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~----- 247 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGE--------LV-DLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRE----- 247 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCe--------EE-EEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCc-----
Confidence 45567788888899999988853211 11 2223567776654210 12477888875422
Q ss_pred CCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC-CHHHHHHHHHHHHHcCCCCcEEee-ecccCCHHHHHHHh
Q 008423 134 GPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY-DTDMFLKFVNDCRQIGITCPIVPG-IMPINNYKGFLRMT 206 (566)
Q Consensus 134 ~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff-D~d~f~~f~~~~R~~Gi~vPIIpG-ImPI~s~~~~~r~~ 206 (566)
.+.++.++=++||||+|+--.-- +.....+.++.+|+.-.+++|+.| | .|....++..
T Consensus 248 ------------~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~ 307 (505)
T PLN02274 248 ------------SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---VTMYQAQNLI 307 (505)
T ss_pred ------------cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---CCHHHHHHHH
Confidence 35788888899999998765543 333445778888876546888875 5 4555555443
No 309
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=40.37 E-value=4.3e+02 Score=27.16 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=26.9
Q ss_pred HcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEee
Q 008423 156 DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 156 dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
++|+|.|+.-.. .+....+++.+++.|.+.|++.+
T Consensus 190 ~~~~d~vi~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 224 (344)
T cd06348 190 NSKPDLIVISAL--AADGGNLVRQLRELGYNGLIVGG 224 (344)
T ss_pred hcCCCEEEECCc--chhHHHHHHHHHHcCCCCceecc
Confidence 569999886664 34556899999999998887643
No 310
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=40.36 E-value=3.4e+02 Score=25.96 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=55.2
Q ss_pred hhhccCCCcCEEEecCCCCC--CCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 10 WTAWWPTTRHSATSRWGAGG--STADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG--~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
..++.+...++|-+-..-+. .....+.++++.+++.++.+...||.+.|. .+.+..+.++|+.-|.+--+ +.
T Consensus 18 ~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~-----~~~~~~~~~~g~dgv~vh~~-~~ 91 (211)
T cd00429 18 LKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENP-----ERYIEAFAKAGADIITFHAE-AT 91 (211)
T ss_pred HHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCH-----HHHHHHHHHcCCCEEEECcc-ch
Confidence 34555666677765321111 111134577888886555566689988544 34577777899987764432 21
Q ss_pred CCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCC
Q 008423 88 HGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 88 ~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPE 127 (566)
+...+.++.+++ ++ +.+|+..+|.
T Consensus 92 -------------~~~~~~~~~~~~-~~--~~~g~~~~~~ 115 (211)
T cd00429 92 -------------DHLHRTIQLIKE-LG--MKAGVALNPG 115 (211)
T ss_pred -------------hhHHHHHHHHHH-CC--CeEEEEecCC
Confidence 123344556653 43 7888888664
No 311
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=39.78 E-value=3.4e+02 Score=25.90 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
..+...+.+.+..+.++|++.|-.=-.|.+- ...+....++++.|++..+..+.+.+-.+. .
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~--------~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d--------~-- 69 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHF--------VPNLTFGPPVVKALRKHTDLPLDVHLMVEN--------P-- 69 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCC--------CCccccCHHHHHHHHhhCCCcEEEEeeeCC--------H--
Confidence 4567778899999999999777641111110 011223457888888765322333343321 0
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGI 185 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi 185 (566)
.++++.-.++|||.++-...=. +...++++.+++.|+
T Consensus 70 ----------~~~~~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~~ 106 (211)
T cd00429 70 ----------ERYIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELGM 106 (211)
T ss_pred ----------HHHHHHHHHcCCCEEEECccch-hhHHHHHHHHHHCCC
Confidence 2234444489999987766533 566788899988773
No 312
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=39.71 E-value=4.9e+02 Score=27.62 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccc-CCCcccHHHHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQI-QGGFACALDLVKHIR 111 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~-~~~F~~A~dLVk~Ir 111 (566)
+.-++.+..+.+...+|++.-+-.---+...+.+.+..+.++|+--|.+=-...|+.-.+.... --..+...+=|+.++
T Consensus 64 ~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~ 143 (292)
T PRK11320 64 DDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAV 143 (292)
T ss_pred HHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHH
Confidence 4567777778877888888776553238899999999999999988886433333221110000 011222333344444
Q ss_pred HH-cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE
Q 008423 112 SA-YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 112 ~~-~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII 190 (566)
+. .+++|.|-+-.-.... ...++-++|.+.=.+||||.|.-.-.=+.+.+.+|.+.+ ++|++
T Consensus 144 ~a~~~~d~~IiARTDa~~~------------~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~ 206 (292)
T PRK11320 144 DARTDPDFVIMARTDALAV------------EGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAV-----KVPIL 206 (292)
T ss_pred HhccCCCeEEEEecCcccc------------cCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc-----CCCEE
Confidence 32 2455766444332211 123477999999999999987766666888887777654 47886
Q ss_pred eeec-----ccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 008423 191 PGIM-----PINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG 250 (566)
Q Consensus 191 pGIm-----PI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~G 250 (566)
+-++ |..|.+.+..+ -+.-+..|...+... +.-+.++.+.+++.|
T Consensus 207 ~n~~~~~~~p~~s~~~L~~l-Gv~~v~~~~~~~~aa--------------~~a~~~~~~~l~~~g 256 (292)
T PRK11320 207 ANITEFGATPLFTTEELASA-GVAMVLYPLSAFRAM--------------NKAAENVYEAIRRDG 256 (292)
T ss_pred EEeccCCCCCCCCHHHHHHc-CCcEEEEChHHHHHH--------------HHHHHHHHHHHHHcC
Confidence 6444 55566666542 233345565544332 233456666777665
No 313
>PRK09875 putative hydrolase; Provisional
Probab=39.55 E-value=4.8e+02 Score=27.53 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCC--CEEEE
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGI--QNVLA 81 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GI--rNILa 81 (566)
-.+.+++++.++.+.|.+++.|.+-.++..+. ++-+.+.|+ ++|++
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~----l~il~e~Gvd~~rvvi 184 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTMGLEQ----LALLQAHGVDLSRVTV 184 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccchHHH----HHHHHHcCcCcceEEE
Confidence 46789999999999999999994443333333 455678898 77764
No 314
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=39.51 E-value=4.5e+02 Score=27.32 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGD 85 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGD 85 (566)
..+.......+.+.|.++|.++.++
T Consensus 109 ~~~~~~~~~~~~~~g~k~vaii~~~ 133 (336)
T cd06339 109 EDEARRAAEYARSQGKRRPLVLAPD 133 (336)
T ss_pred HHHHHHHHHHHHhcCccceEEEecC
Confidence 3444444555567899999998754
No 315
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=39.39 E-value=3.1e+02 Score=27.74 Aligned_cols=76 Identities=24% Similarity=0.221 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
.++.+++....+.+.++|++-|--=+|=.+.+ -+.+-|+.+++..+..+.|=++|=-
T Consensus 132 ~L~~e~i~~a~~~~~~agadfIKTsTG~~~~g------------at~~~v~~m~~~~~~~~~IKasGGI----------- 188 (221)
T PRK00507 132 LLTDEEKVKACEIAKEAGADFVKTSTGFSTGG------------ATVEDVKLMRETVGPRVGVKASGGI----------- 188 (221)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCC------------CCHHHHHHHHHHhCCCceEEeeCCc-----------
Confidence 56667776666667777777443333321111 2567778888776665666666511
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEe
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIIT 164 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiIT 164 (566)
...+...++++|||+.|=|
T Consensus 189 --------rt~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 189 --------RTLEDALAMIEAGATRLGT 207 (221)
T ss_pred --------CCHHHHHHHHHcCcceEcc
Confidence 3466678899999998866
No 316
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=39.04 E-value=4.8e+02 Score=27.38 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=81.4
Q ss_pred CCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CCCccc--cCCCcccHHHHHHHHHHHcCCceeEEEE
Q 008423 47 CVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG-QDKFVQ--IQGGFACALDLVKHIRSAYGDYFGITVA 123 (566)
Q Consensus 47 Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~-~~~~~~--~~~~F~~A~dLVk~Ir~~~gd~F~IGVA 123 (566)
+.+++++|.+. +.+.+.+....+.++|++-|=+=-|-|... .+.+-. .....+...++++.+|+..+-.+.+-+-
T Consensus 62 ~~p~i~ql~g~--~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir 139 (319)
T TIGR00737 62 ETPISVQLFGS--DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR 139 (319)
T ss_pred cceEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 56777888765 667888888888899998885444665311 000000 0112345778888898776533333322
Q ss_pred -ecCCCCCCCCCCCCCCCccchHHHHHHH-HHHHHcCCcEEEe-----ccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 124 -GYPEGHPDTIGPDGVASNESYQSDLLYL-KKKVDAGADLIIT-----QLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 124 -gyPEgHpe~~~~~~~~~~~~~~~dl~~L-k~KvdAGAdFiIT-----QlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
++.+. . .+...+ +.=.++|+|+|.- +..|......++++.+++. +++||+. .=.|
T Consensus 140 ~g~~~~------~----------~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~ipvi~-nGgI 201 (319)
T TIGR00737 140 IGWDDA------H----------INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VRIPVIG-NGDI 201 (319)
T ss_pred cccCCC------c----------chHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CCCcEEE-eCCC
Confidence 22111 0 122233 3334679998742 1235444556778888764 4688653 3466
Q ss_pred CCHHHHHHHhccCC
Q 008423 197 NNYKGFLRMTGFCK 210 (566)
Q Consensus 197 ~s~~~~~r~~~l~G 210 (566)
.|...+.++.+..|
T Consensus 202 ~~~~da~~~l~~~g 215 (319)
T TIGR00737 202 FSPEDAKAMLETTG 215 (319)
T ss_pred CCHHHHHHHHHhhC
Confidence 77777666554333
No 317
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=39.02 E-value=2.9e+02 Score=35.27 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC----------CCHH
Q 008423 147 DLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK----------IPAE 216 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~----------VP~~ 216 (566)
+++.+++=+ ++||+|+.=++|+-+......+.+.++--+++.+.+++ |...+++++++=+.. .+..
T Consensus 60 ~~~~~~~~i-~~ad~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~---s~~~~~~ltr~G~f~m~~~~~~~~~~~~~ 135 (1310)
T PRK12493 60 NWEEFKRDV-ARADFFFGSLLFIEDLARPLVEALAPARDRLCPVCVIP---SMPALMRLTKLGSFSLAQELGQSKSAIAQ 135 (1310)
T ss_pred hHHHHHHHH-hhCCEEEeeccCcHHHHHHHHHHHHHhhcCCCeEEEEc---ChHHHHHhhcccceeccccccCCccchhH
Confidence 366777776 79999999999999888888888876555666655554 444555555543322 3456
Q ss_pred HHHHhCC
Q 008423 217 ITAALEP 223 (566)
Q Consensus 217 il~~Le~ 223 (566)
+++++.+
T Consensus 136 ~~k~~~~ 142 (1310)
T PRK12493 136 FMKKRKP 142 (1310)
T ss_pred HHHHhhh
Confidence 7777765
No 318
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=38.57 E-value=3.1e+02 Score=29.67 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEE-EEec---CCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGIT-VAGY---PEGHPDTIGP 135 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IG-VAgy---PEgHpe~~~~ 135 (566)
+...+.+.++.+.++||+.|++. |=|....+....+-..=.--..-|+.||+.+++-.-|. |+-= .-||--.-..
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lF-gv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~ 137 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPF-GISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHN 137 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-CCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeeccC
Confidence 66789999999999999999965 43432111100010010113445667888776422221 1111 1233111000
Q ss_pred CCCCCccchHHHHHHHHH----HHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC-CCc
Q 008423 136 DGVASNESYQSDLLYLKK----KVDAGADLIITQLFYDTDMFLKFVNDCRQIGI-TCP 188 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~----KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi-~vP 188 (566)
+. -+-+.-++.|.+ -.+||||++--==--|-.. ....+.+.++|. ++|
T Consensus 138 -g~---i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~~~v~ 190 (322)
T PRK13384 138 -DE---VDNDATVENLVKQSVTAAKAGADMLAPSAMMDGQV-KAIRQGLDAAGFEHVA 190 (322)
T ss_pred -Cc---CccHHHHHHHHHHHHHHHHcCCCeEecccccccHH-HHHHHHHHHCCCCCCc
Confidence 00 001133444443 3479999986554445433 445666777886 344
No 319
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=38.50 E-value=4.6e+02 Score=26.93 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=27.1
Q ss_pred HcCCcEEEeccCCCHHHHHHHHHHHHHcCC--CCcEEeeec
Q 008423 156 DAGADLIITQLFYDTDMFLKFVNDCRQIGI--TCPIVPGIM 194 (566)
Q Consensus 156 dAGAdFiITQlffD~d~f~~f~~~~R~~Gi--~vPIIpGIm 194 (566)
.+++|.|+.... .+....|++.+++.|+ ++|++.+..
T Consensus 193 ~~~~d~ii~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~ 231 (346)
T cd06330 193 AAKPDAIFSSLW--GGDLVTFVRQANARGLFDGTTVVLTLT 231 (346)
T ss_pred hcCCCEEEEecc--cccHHHHHHHHHhcCcccCceEEeecc
Confidence 468999886443 3456789999999998 677776553
No 320
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=38.43 E-value=2.8e+02 Score=28.71 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
..+.+|+ ++++|.++...... ....|++.+++.|++.|++.
T Consensus 192 ~~i~~l~---~~~~d~v~~~~~~~--~~~~~~~~~~~~g~~~~~~~ 232 (342)
T cd06329 192 PYVAKIK---ASGADTVITGNWGN--DLLLLVKQAADAGLKLPFYT 232 (342)
T ss_pred HHHHHHH---HcCCCEEEEcccCc--hHHHHHHHHHHcCCCceEEe
Confidence 4566665 47999998866443 45689999999999888754
No 321
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.91 E-value=6.1e+02 Score=28.24 Aligned_cols=119 Identities=15% Similarity=0.254 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH---cCCceeEE-EEecCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA---YGDYFGIT-VAGYPEGHPDTI 133 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~---~gd~F~IG-VAgyPEgHpe~~ 133 (566)
.++.+.+.+.+..+.+.|++.|..+..|....+.. ...+....-.+|++.|.+. .+.-..+. ...+|..-
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~--~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i---- 253 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGR--DREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDL---- 253 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccc--cccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccC----
Confidence 44678888888888889999986554343221100 0011112356777776422 12122333 23455321
Q ss_pred CCCCCCCccchHHHHHHHHHHHHcCCcEE--Eecc-----------CCCHHHHHHHHHHHHHc--CCC--CcEEeee
Q 008423 134 GPDGVASNESYQSDLLYLKKKVDAGADLI--ITQL-----------FYDTDMFLKFVNDCRQI--GIT--CPIVPGI 193 (566)
Q Consensus 134 ~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQl-----------ffD~d~f~~f~~~~R~~--Gi~--vPIIpGI 193 (566)
+ .++-.+.++..+|+.++ =-|- -|+.+.+.+.++.+|++ |+. .-+|.|+
T Consensus 254 ~-----------~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGf 319 (455)
T PRK14335 254 S-----------DDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGF 319 (455)
T ss_pred C-----------HHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Confidence 1 23333333334577643 2222 36788888888888887 543 2355554
No 322
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=37.90 E-value=20 Score=30.80 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCceeecCCCCCCCCCCCCCcccccCCCceee-eeee
Q 008423 393 TKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVY-QKAY 441 (566)
Q Consensus 393 t~~i~~~L~~ln~~g~~ti~SQP~vng~~S~d~~~GwGp~~Gyvy-QKay 441 (566)
..+|+.++..|-+.|++ .||| ||.+|||. +|||
T Consensus 37 ~aTIRN~M~~Le~lGlv--e~~p--------------~~s~GriPT~~aY 70 (78)
T PF03444_consen 37 PATIRNEMADLEELGLV--ESQP--------------HPSGGRIPTDKAY 70 (78)
T ss_pred hHHHHHHHHHHHHCCCc--cCCC--------------CCCCCCCcCHHHH
Confidence 47999999999999986 4565 57789987 5555
No 323
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.77 E-value=2.9e+02 Score=29.60 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=78.7
Q ss_pred cCCCCCCCc---hhHHHHHHHHHhhcC------CceeEEecccc-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423 24 RWGAGGSTA---DLTLDIANRMQNTIC------VETMMHLTCTN-----MPVEKIDHALQTIKSNGIQNVLALRGDPPHG 89 (566)
Q Consensus 24 TwgagG~~~---~~Sl~la~~lq~~~G------le~i~HLTCrd-----~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~ 89 (566)
|+.=||+.. .-.+++...+++..| +.+-+.+++.+ ++.++..+.+..+.+.|+.-|=+-.|.....
T Consensus 183 ~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~ 262 (353)
T cd04735 183 TDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK 262 (353)
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc
Confidence 555566632 236788888888776 44666777654 3566777777888899997776655544221
Q ss_pred CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE--EEeccC
Q 008423 90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL--IITQLF 167 (566)
Q Consensus 90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlf 167 (566)
.. .... ...++++.+++..+...-|-+.|.= .++ ++. .+-++.|||+ +-.+++
T Consensus 263 ~~-----~~~~-~~~~~~~~ik~~~~~~iPVi~~Ggi------~t~----------e~a---e~~l~~gaD~V~~gR~li 317 (353)
T cd04735 263 SR-----RGRD-DNQTIMELVKERIAGRLPLIAVGSI------NTP----------DDA---LEALETGADLVAIGRGLL 317 (353)
T ss_pred cc-----cCCc-chHHHHHHHHHHhCCCCCEEEECCC------CCH----------HHH---HHHHHcCCChHHHhHHHH
Confidence 11 0011 1345556666654222333333211 111 233 3334448997 457777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcEEeeecc
Q 008423 168 YDTDMFLKFVNDCRQIGITCPIVPGIMP 195 (566)
Q Consensus 168 fD~d~f~~f~~~~R~~Gi~vPIIpGImP 195 (566)
.|++...++. .|...-|.++|.|
T Consensus 318 adPdl~~k~~-----~G~~~~ir~ci~~ 340 (353)
T cd04735 318 VDPDWVEKIK-----EGREDEINLEIDP 340 (353)
T ss_pred hCccHHHHHH-----cCChhhhhhcCCH
Confidence 8887765553 2444556676654
No 324
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=37.67 E-value=3.5e+02 Score=30.45 Aligned_cols=96 Identities=26% Similarity=0.392 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~ 140 (566)
++.=+..|....++|++-|. | |... |.-.|-+++|++||+.|+. ..| +||+=-
T Consensus 249 re~dK~rl~ll~~aGvdvvi-L--DSSq---------GnS~~qiemik~iK~~yP~-l~V-iaGNVV------------- 301 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVI-L--DSSQ---------GNSIYQLEMIKYIKETYPD-LQI-IAGNVV------------- 301 (503)
T ss_pred ccchhHHHHHhhhcCCcEEE-E--ecCC---------CcchhHHHHHHHHHhhCCC-cee-ecccee-------------
Confidence 34444556666778886555 3 3322 2223578999999999985 333 233221
Q ss_pred ccchHHHHHHHHHHHHcCCc----------EEEeccCC-----CHHHHHHHHHHHHHcCCCCcEEe
Q 008423 141 NESYQSDLLYLKKKVDAGAD----------LIITQLFY-----DTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 141 ~~~~~~dl~~Lk~KvdAGAd----------FiITQlff-----D~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
--+.-+.=|+|||| .-|||=+- -.-+..+-.+..+..| +|||+
T Consensus 302 ------T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~g--vpviA 359 (503)
T KOG2550|consen 302 ------TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFG--VPCIA 359 (503)
T ss_pred ------eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcC--Cceee
Confidence 12224566899998 55999221 1112223333345555 77764
No 325
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=37.52 E-value=4.7e+02 Score=26.80 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCC--CcEE
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGIT--CPIV 190 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~--vPII 190 (566)
..+.+|+ ++++|.|+.-... .....|++.+++.|+. ++++
T Consensus 181 ~~v~~l~---~~~~d~v~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 222 (334)
T cd06327 181 SYLLQAQ---ASGADVLVLANAG--ADTVNAIKQAAEFGLTKGQKLA 222 (334)
T ss_pred HHHHHHH---hCCCCEEEEeccc--hhHHHHHHHHHHhCCccCCcEE
Confidence 4455554 4689988885533 3445789999999974 4444
No 326
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=37.26 E-value=5.5e+02 Score=27.52 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeee
Q 008423 146 SDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGI 193 (566)
Q Consensus 146 ~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGI 193 (566)
.|...+.+|++ +++|.|| ++-+.+....+++++++.|++-+++.|-
T Consensus 221 ~d~~~~l~~i~~~~~dvIi--l~~~~~~~~~il~qa~~~g~~~~~~i~~ 267 (410)
T cd06363 221 TDYQQILKQINQTKVNVIV--VFASRQPAEAFFNSVIQQNLTGKVWIAS 267 (410)
T ss_pred HHHHHHHHHHhcCCCeEEE--EEcChHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45666666665 4889888 4556677778999999999876654443
No 327
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.17 E-value=3.4e+02 Score=28.32 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=62.6
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC--------ccccCCCcccHHHHHHHHHHHcCCceeE
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK--------FVQIQGGFACALDLVKHIRSAYGDYFGI 120 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~--------~~~~~~~F~~A~dLVk~Ir~~~gd~F~I 120 (566)
.+-..+.|+.++.-.++..-..|...| .|++-+.+-+ -....+..+ ..+-++.+|+..++ ..|
T Consensus 116 ~~~~~i~~TRKt~Pg~r~~~k~Av~~G-------Gg~~HR~gL~d~vlikdnH~~~~g~~~-~~~av~~~R~~~~~-~~I 186 (272)
T cd01573 116 NPDIVVATTRKAFPGTRKLALKAILAG-------GAVPHRLGLSETILVFAEHRAFLGGPE-PLKALARLRATAPE-KKI 186 (272)
T ss_pred CCCcEEEEeCCCCccchHHHHHHHHhc-------CccccccCCCcceEeehhHHHHhCCch-HHHHHHHHHHhCCC-CeE
Confidence 344566667776666666666665444 3443322110 000112221 24556677776654 478
Q ss_pred EEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE
Q 008423 121 TVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV 190 (566)
Q Consensus 121 GVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII 190 (566)
||-++- ++.+++-+++|||+|.--.+|. +.+.+.++.+++...++||+
T Consensus 187 gVev~t---------------------~eea~~A~~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~ 234 (272)
T cd01573 187 VVEVDS---------------------LEEALAAAEAGADILQLDKFSP-EELAELVPKLRSLAPPVLLA 234 (272)
T ss_pred EEEcCC---------------------HHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEE
Confidence 887632 2223444579999999888776 45577787777654456763
No 328
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=37.08 E-value=2.9e+02 Score=28.47 Aligned_cols=99 Identities=23% Similarity=0.330 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE-----------------eeecccCCHH---HH-H-H
Q 008423 147 DLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV-----------------PGIMPINNYK---GF-L-R 204 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII-----------------pGImPI~s~~---~~-~-r 204 (566)
.+...++=.++|||||+- -.+....+.++++++ +++|++ +|++.= .+. .| + +
T Consensus 64 L~~~a~~Le~~GAd~i~l----~~NT~H~~~d~iq~~-~~iPllhIidaTa~~ik~~g~kkvgLLgT-~~Tm~~~fY~~~ 137 (230)
T COG1794 64 LIDAAKKLERAGADFIVL----PTNTMHKVADDIQKA-VGIPLLHIIDATAKAIKAAGAKKVGLLGT-RFTMEQGFYRKR 137 (230)
T ss_pred HHHHHHHHHhcCCCEEEE----eCCcHHHHHHHHHHh-cCCCeehHHHHHHHHHHhcCCceeEEeec-cchHHhHHHHHH
Confidence 344455555789999863 345666777888753 456764 333211 111 11 1 1
Q ss_pred Hh-ccCCCCCCHH---------HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 008423 205 MT-GFCKTKIPAE---------ITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHL 256 (566)
Q Consensus 205 ~~-~l~Gv~VP~~---------il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHf 256 (566)
+. +-.-+-+|++ |.+.|..- .+++.+-++..+++++|.+.|+.|+=+
T Consensus 138 l~~~gievvvPdd~~q~~v~~iIy~El~~G-----~~~~~sr~~~~~ii~~l~~~Gae~vIl 194 (230)
T COG1794 138 LEEKGIEVVVPDDDEQAEVNRIIYEELCQG-----IVKDASRELYLAVIERLAERGAEGVIL 194 (230)
T ss_pred HHHCCceEecCCHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 22 1224557754 22223221 155567778888899999888888755
No 329
>PRK08508 biotin synthase; Provisional
Probab=36.99 E-value=3e+02 Score=28.47 Aligned_cols=61 Identities=5% Similarity=-0.059 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHcCCc-EEEec--cCC---CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHH
Q 008423 144 YQSDLLYLKKKVDAGAD-LIITQ--LFY---DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 144 ~~~dl~~Lk~KvdAGAd-FiITQ--lff---D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~ 205 (566)
+++-++..++-.+.|+. |.+++ ..+ +.+.+.+.++.+|+.+..+.+... ....+...+.++
T Consensus 42 ~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s-~G~~~~e~l~~L 108 (279)
T PRK08508 42 IEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC-NGTASVEQLKEL 108 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec-CCCCCHHHHHHH
Confidence 33445555554567885 43543 223 456667777788777655544221 233366666665
No 330
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=36.93 E-value=3.6e+02 Score=27.58 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHH
Q 008423 100 FACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVND 179 (566)
Q Consensus 100 F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~ 179 (566)
..+.++.|+.||+.|++.+-+ |- ...-|.- .-..+|. .+||||++.-=..=+.+...+.++.
T Consensus 40 k~eG~~aV~~lr~~~pd~~Iv--AD-----~Kt~D~G---------~~e~~ma--~~aGAd~~tV~g~A~~~TI~~~i~~ 101 (217)
T COG0269 40 KAEGMRAVRALRELFPDKIIV--AD-----LKTADAG---------AIEARMA--FEAGADWVTVLGAADDATIKKAIKV 101 (217)
T ss_pred HHhhHHHHHHHHHHCCCCeEE--ee-----eeecchh---------HHHHHHH--HHcCCCEEEEEecCCHHHHHHHHHH
Confidence 446789999999999876533 21 0111110 1122222 3589999998899999999999999
Q ss_pred HHHcCCCCcEEeeecccCCHHHHHH
Q 008423 180 CRQIGITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 180 ~R~~Gi~vPIIpGImPI~s~~~~~r 204 (566)
+++.|+. +..-+|-..+..+..+
T Consensus 102 A~~~~~~--v~iDl~~~~~~~~~~~ 124 (217)
T COG0269 102 AKEYGKE--VQIDLIGVWDPEQRAK 124 (217)
T ss_pred HHHcCCe--EEEEeecCCCHHHHHH
Confidence 9999844 5666665555554444
No 331
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.66 E-value=3.1e+02 Score=27.68 Aligned_cols=144 Identities=11% Similarity=0.081 Sum_probs=74.6
Q ss_pred chhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCc-eeEEecccc----------------CCHHHHHHHHHHH
Q 008423 9 GWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVE-TMMHLTCTN----------------MPVEKIDHALQTI 71 (566)
Q Consensus 9 ~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle-~i~HLTCrd----------------~n~~~L~~~L~~a 71 (566)
...+++....+.|.|-- ......++...+.+.+|-+ ++.-+-|++ -+.....+.+..+
T Consensus 88 ~~~~~l~~Ga~~Viigt-----~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (253)
T PRK02083 88 DARRLLRAGADKVSINS-----AAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEV 162 (253)
T ss_pred HHHHHHHcCCCEEEECh-----hHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHH
Confidence 34444445556654432 1222334555566555522 344455543 1233556667778
Q ss_pred HHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 72 KSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 72 ~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
.++|+..+++..=+. .+ ...+++ .++++.+++..+- -.|+..+. .+. +|+..+
T Consensus 163 ~~~g~~~ii~~~i~~--~g-----~~~g~d--~~~i~~~~~~~~i-pvia~GGv-------~s~----------~d~~~~ 215 (253)
T PRK02083 163 EELGAGEILLTSMDR--DG-----TKNGYD--LELTRAVSDAVNV-PVIASGGA-------GNL----------EHFVEA 215 (253)
T ss_pred HHcCCCEEEEcCCcC--CC-----CCCCcC--HHHHHHHHhhCCC-CEEEECCC-------CCH----------HHHHHH
Confidence 889999988743221 11 122333 6777777765432 12222211 111 456666
Q ss_pred HHHHHcCCcE-EEeccCCC-HHHHHHHHHHHHHcCCC
Q 008423 152 KKKVDAGADL-IITQLFYD-TDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 152 k~KvdAGAdF-iITQlffD-~d~f~~f~~~~R~~Gi~ 186 (566)
.++ .||+- ++...+|+ .-.+.+..+.|++.||.
T Consensus 216 ~~~--~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK02083 216 FTE--GGADAALAASIFHFGEITIGELKAYLAEQGIP 250 (253)
T ss_pred HHh--CCccEEeEhHHHHcCCCCHHHHHHHHHHCCCc
Confidence 555 69974 55566664 33445556667777865
No 332
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=36.40 E-value=1.3e+02 Score=29.72 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=46.3
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHH
Q 008423 68 LQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSD 147 (566)
Q Consensus 68 L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~d 147 (566)
.+.+.+.|++.+.++ |-.... .+...-.++++.|++..+- .+-+.|-- .+
T Consensus 35 a~~~~~~g~d~l~v~--dl~~~~-------~~~~~~~~~i~~i~~~~~~--pv~~~GgI-------------------~~ 84 (234)
T cd04732 35 AKKWEEAGAKWLHVV--DLDGAK-------GGEPVNLELIEEIVKAVGI--PVQVGGGI-------------------RS 84 (234)
T ss_pred HHHHHHcCCCEEEEE--CCCccc-------cCCCCCHHHHHHHHHhcCC--CEEEeCCc-------------------CC
Confidence 334456788888777 222110 0111236677778776542 33333321 11
Q ss_pred HHHHHHHHHcCCcEEE--eccCCCHHHHHHHHHHH
Q 008423 148 LLYLKKKVDAGADLII--TQLFYDTDMFLKFVNDC 180 (566)
Q Consensus 148 l~~Lk~KvdAGAdFiI--TQlffD~d~f~~f~~~~ 180 (566)
.+..++-+++|||+++ |.++.|++.+.+..+.+
T Consensus 85 ~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEY 119 (234)
T ss_pred HHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHc
Confidence 3334555569999865 77788887776666554
No 333
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.32 E-value=5.4e+02 Score=27.11 Aligned_cols=108 Identities=12% Similarity=0.183 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc--eeEEEEecCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY--FGITVAGYPEGHPDTIGPD 136 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~--F~IGVAgyPEgHpe~~~~~ 136 (566)
.+.+.+.+.++.+.+.|+..|+++..- |+. ..-..+.=.++++..++..+.. .-.|+.++- .
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gtt----GE~---~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~--------t- 85 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTT----GES---PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNS--------T- 85 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC----ccc---hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCc--------H-
Confidence 588999999999999999999987421 221 1112223455677766655433 344444321 1
Q ss_pred CCCCccchHHHHHHHHHHHHcCCcEE-EeccCC---CHHHHHHHHHHHHHcCCCCcEEe
Q 008423 137 GVASNESYQSDLLYLKKKVDAGADLI-ITQLFY---DTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 137 ~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlff---D~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
++-++..+.=-++|||-+ +.-++| +.+-+.++.+.+.++- ++|||.
T Consensus 86 --------~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~-~lPvil 135 (299)
T COG0329 86 --------AEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV-DLPVIL 135 (299)
T ss_pred --------HHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc-CCCEEE
Confidence 133333343345799954 444555 3344555555555443 788754
No 334
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=36.15 E-value=4.8e+02 Score=26.48 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH-cCCceeEEEEecCCCCCCCCCCCC
Q 008423 59 MPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA-YGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 59 ~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~-~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
.+...|.+.|..+.+.|++.+-+=--| | ++ ...+....+.|+.+|+. ..-.|.+-... .++
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimD----G-~F---VPN~tfg~~~i~~lr~~~~~~~~dvHLMv--------~~P-- 74 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMD----N-HY---VPNLTIGPMVCQALRKHGITAPIDVHLMV--------EPV-- 74 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc----C-cc---CCCcccCHHHHHHHHhhCCCCCEEEEecc--------CCH--
Confidence 356788899999999999988743222 1 11 12455678889999975 23334443322 122
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeec--ccCCHHHHHHHh
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIM--PINNYKGFLRMT 206 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGIm--PI~s~~~~~r~~ 206 (566)
..++..=++||||.|.-+.== .+...+.++.+|+.|+. +||. |-++...+..+.
T Consensus 75 ----------~~~i~~~~~~gad~I~~H~Ea-~~~~~~~l~~Ir~~g~k----~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 75 ----------DRIVPDFADAGATTISFHPEA-SRHVHRTIQLIKSHGCQ----AGLVLNPATPVDILDWVL 130 (223)
T ss_pred ----------HHHHHHHHHhCCCEEEEcccC-cccHHHHHHHHHHCCCc----eeEEeCCCCCHHHHHHHH
Confidence 235556667999988766432 23467889999999954 4443 666666555443
No 335
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.63 E-value=5.8e+02 Score=27.32 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.++..+....+++.|.+.|=+-.|... .+...++.|+.||+..|+.+.|.+=++ .+ .+.
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~-----------~~~~di~~i~~vR~~~G~~~~l~vDan-~~----~~~---- 202 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPG-----------VVRRDLKACLAVREAVGPDMRLMHDGA-HW----YSR---- 202 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCch-----------hHHHHHHHHHHHHHHhCCCCeEEEECC-CC----cCH----
Confidence 5666777778888999999854222110 133478899999999998888887443 11 122
Q ss_pred CccchHHHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCC-HHHHHHHhccC--CCCCCH
Q 008423 140 SNESYQSDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINN-YKGFLRMTGFC--KTKIPA 215 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s-~~~~~r~~~l~--Gv~VP~ 215 (566)
.+-.++.++++ .+.. .+=|++...+ + .-..++|+. ..+||..|=. +.+ ...+.++.+.- .+-.|+
T Consensus 203 ------~~A~~~~~~l~~~~l~-~iEeP~~~~d-~-~~~~~l~~~-~~ipIa~~E~-~~~~~~~~~~~i~~~a~d~v~~d 271 (368)
T cd03329 203 ------ADALRLGRALEELGFF-WYEDPLREAS-I-SSYRWLAEK-LDIPILGTEH-SRGALESRADWVLAGATDFLRAD 271 (368)
T ss_pred ------HHHHHHHHHhhhcCCC-eEeCCCCchh-H-HHHHHHHhc-CCCCEEccCc-ccCcHHHHHHHHHhCCCCEEecC
Confidence 33444444543 3443 5669996433 2 223355554 4589887765 444 66666554332 222221
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 216 EITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 216 ~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
-.+-=|+.-+.+++....+.|++
T Consensus 272 --------------~~~~GGit~~~~ia~~a~~~gi~ 294 (368)
T cd03329 272 --------------VNLVGGITGAMKTAHLAEAFGLD 294 (368)
T ss_pred --------------ccccCCHHHHHHHHHHHHHcCCE
Confidence 02223667777777777777643
No 336
>PRK01060 endonuclease IV; Provisional
Probab=35.59 E-value=2.2e+02 Score=28.82 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCc---eeEEeccc-c----------CCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 38 IANRMQNTICVE---TMMHLTCT-N----------MPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 38 la~~lq~~~Gle---~i~HLTCr-d----------~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
+-+.++ ..|++ ..+|.+.. + .+.+.+.+.++.|+++|+..|.+-.|...
T Consensus 52 lk~~~~-~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~ 114 (281)
T PRK01060 52 FKAACE-KYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHL 114 (281)
T ss_pred HHHHHH-HcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 344444 58998 77787642 2 23457888899999999999998888643
No 337
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=35.53 E-value=2.4e+02 Score=27.69 Aligned_cols=94 Identities=13% Similarity=0.252 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecC-CCCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYP-EGHPDTIGPDGV 138 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyP-EgHpe~~~~~~~ 138 (566)
+..|.+.|..+.+.|++.++ +|- ..+|+. |.+.|-.+|+.|++ +.+.++ .| ++|....+
T Consensus 28 k~~L~~~i~~lie~G~~~fi--~Gg-----------alG~D~waae~vl~LK~~yp~-ikL~~v-~Pf~~q~~~W~---- 88 (177)
T PF06908_consen 28 KKALKKQIIELIEEGVRWFI--TGG-----------ALGVDLWAAEVVLELKKEYPE-IKLALV-LPFENQGNNWN---- 88 (177)
T ss_dssp HHHHHHHHHHHHTTT--EEE--E--------------TTHHHHHHHHHHTTTTT-TT--EEEEE-ESSB-TTTTS-----
T ss_pred HHHHHHHHHHHHHCCCCEEE--ECC-----------cccHHHHHHHHHHHHHhhhhh-eEEEEE-EcccchhhcCC----
Confidence 46788888899999999877 222 134664 88888888988874 777544 45 44444332
Q ss_pred CCccchHHHHHHHHHHHHcCCcEEEe---ccCCCHHHHHHHHHHH
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLIIT---QLFYDTDMFLKFVNDC 180 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFiIT---QlffD~d~f~~f~~~~ 180 (566)
..-+..-.++-+-|||++. ++.|++..|.+.-+.+
T Consensus 89 -------~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fM 126 (177)
T PF06908_consen 89 -------EANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFM 126 (177)
T ss_dssp -------HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHH
Confidence 2344455666678998643 4578888886544333
No 338
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=35.37 E-value=3.6e+02 Score=24.84 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=36.4
Q ss_pred cccCCHHHHHHHHHHHHHcC-----CCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC--ceeEEEEecC
Q 008423 56 CTNMPVEKIDHALQTIKSNG-----IQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD--YFGITVAGYP 126 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~G-----IrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd--~F~IGVAgyP 126 (566)
.+.++.+.+.+.+..+.+.| ++.++...|+|+... ...-.++++.+++..+. .+.+.+..++
T Consensus 27 ~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~tn~ 95 (216)
T smart00729 27 LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---------PEQLEELLEAIREILGLADDVEITIETRP 95 (216)
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---------HHHHHHHHHHHHHhCCCCCCeEEEEEeCc
Confidence 44556677778877775554 455666666665321 11246677777765432 3566666664
No 339
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=35.33 E-value=2e+02 Score=32.53 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=57.2
Q ss_pred CCCCCCchh-HHHHHHHHHhhcCCceeEEecccc------CCHHHHHHHHHHHHHcCCCE-------EEEecCCCCCCCC
Q 008423 26 GAGGSTADL-TLDIANRMQNTICVETMMHLTCTN------MPVEKIDHALQTIKSNGIQN-------VLALRGDPPHGQD 91 (566)
Q Consensus 26 gagG~~~~~-Sl~la~~lq~~~Gle~i~HLTCrd------~n~~~L~~~L~~a~~~GIrN-------ILaLrGDpp~~~~ 91 (566)
-++|..... -..+|..++ .+|-.-..|+|.|. ...+.+.+.+..+.++|+.. +-.+.|.|-.+-+
T Consensus 72 ip~G~lt~~Qlr~la~ia~-~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L~~~GL~~~~~~~d~vRnv~~~P~ag~~ 150 (513)
T PRK09566 72 VPNGILTSEQLRVLASIVQ-RYGDDGSADITTRQNLQLRGILLEDLPEILNRLKAVGLTSVQSGMDNVRNITGSPVAGID 150 (513)
T ss_pred cCCccCCHHHHHHHHHHHH-HhCCCCeEEEEcccceeecCCcHHHHHHHHHHHHHcCCCchhccCCCCCCccCCCCCCCC
Confidence 377765444 444555555 57866789999864 47788888888887776543 2223355433211
Q ss_pred CccccCCCcccHHHHHHHHHH---------HcCCceeEEEEecCCCC
Q 008423 92 KFVQIQGGFACALDLVKHIRS---------AYGDYFGITVAGYPEGH 129 (566)
Q Consensus 92 ~~~~~~~~F~~A~dLVk~Ir~---------~~gd~F~IGVAgyPEgH 129 (566)
. ........+|.+|-+++.. ..+..|.|++.|-|...
T Consensus 151 ~-~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~~~c 196 (513)
T PRK09566 151 P-DELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGRDNS 196 (513)
T ss_pred c-chhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCCCCc
Confidence 0 0000112234444444432 12346899999998764
No 340
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.21 E-value=4.8e+02 Score=26.24 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=91.7
Q ss_pred cchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcCCCEEEEecCC
Q 008423 8 SGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNGIQNVLALRGD 85 (566)
Q Consensus 8 ~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~GIrNILaLrGD 85 (566)
+..-+...+..+-|+|.--+-||....=.-+...++....-+-..--|.-|+ ..--..-+..+|...|..-|=
T Consensus 11 eEA~eAieGGAdIiDVKNP~EGSLGANFPWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiK----- 85 (235)
T COG1891 11 EEAIEAIEGGADIIDVKNPAEGSLGANFPWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIK----- 85 (235)
T ss_pred HHHHHHhhCCCceEeccCcccCcccCCChHHHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEE-----
Confidence 3344566788899999887777754443333444443322222233344454 233344444556666665543
Q ss_pred CCCCCCCccccCCCcccHHHHHHHHHH---HcCCceeEEEEecCCCCCCCC-CCCCCCCccchHHHHHHHHHHHHcCCcE
Q 008423 86 PPHGQDKFVQIQGGFACALDLVKHIRS---AYGDYFGITVAGYPEGHPDTI-GPDGVASNESYQSDLLYLKKKVDAGADL 161 (566)
Q Consensus 86 pp~~~~~~~~~~~~F~~A~dLVk~Ir~---~~gd~F~IGVAgyPEgHpe~~-~~~~~~~~~~~~~dl~~Lk~KvdAGAdF 161 (566)
-+-+ .......|+++++.+-+ .+++.-.+-.|||-..|--.+ ++ .++.+..+ +||||.
T Consensus 86 ---VGLY---g~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~P----------l~~P~vaa--~ag~Dv 147 (235)
T COG1891 86 ---VGLY---GTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSP----------LLLPEVAA--EAGADV 147 (235)
T ss_pred ---Eeec---ccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCc----------cccHHHHH--hcCCCE
Confidence 2221 11234458887655332 355445677889999885422 22 34555555 489998
Q ss_pred EEec----------cCCCHHHHHHHHHHHHHcCCCC
Q 008423 162 IITQ----------LFYDTDMFLKFVNDCRQIGITC 187 (566)
Q Consensus 162 iITQ----------lffD~d~f~~f~~~~R~~Gi~v 187 (566)
.+-- =|-|.+.+..|++..+++|+.+
T Consensus 148 aMvDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~ 183 (235)
T COG1891 148 AMVDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEV 183 (235)
T ss_pred EEEecccccchhHHhhhcHHHHHHHHHHHHHcchHH
Confidence 7633 2458888999999999999654
No 341
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=35.11 E-value=6.5e+02 Score=27.76 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-----CCCccc------cCCCc-
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG-----QDKFVQ------IQGGF- 100 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~-----~~~~~~------~~~~F- 100 (566)
+..-+++..+++...+++++-|+- +...+......|.+.|++-|.++-==++.. ...+.+ ..+++
T Consensus 168 e~~~~i~~~Vk~~~~iPv~vKLsP---n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlS 244 (385)
T PLN02495 168 DLLEEVCGWINAKATVPVWAKMTP---NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYS 244 (385)
T ss_pred HHHHHHHHHHHHhhcCceEEEeCC---ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCcc
Confidence 345566677777778999999995 344577888888889988887643111100 000000 12333
Q ss_pred -----ccHHHHHHHHHHHcCCc----e-eEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE--EeccCC
Q 008423 101 -----ACALDLVKHIRSAYGDY----F-GITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI--ITQLFY 168 (566)
Q Consensus 101 -----~~A~dLVk~Ir~~~gd~----F-~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQlff 168 (566)
..|+..|+.+++..... + -||+.|-=. -+-..+++.|||+.+ -|-++|
T Consensus 245 G~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s--------------------~~Da~e~i~aGAs~VQv~Ta~~~ 304 (385)
T PLN02495 245 SKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVET--------------------GGDAAEFILLGADTVQVCTGVMM 304 (385)
T ss_pred chhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCC--------------------HHHHHHHHHhCCCceeEeeeeee
Confidence 23666666666654211 2 455554322 233577889999975 588888
Q ss_pred C-HHHHHHHHHHHH
Q 008423 169 D-TDMFLKFVNDCR 181 (566)
Q Consensus 169 D-~d~f~~f~~~~R 181 (566)
+ ++.+.+..+.+.
T Consensus 305 ~Gp~vi~~i~~~L~ 318 (385)
T PLN02495 305 HGYPLVKNLCAELQ 318 (385)
T ss_pred cCcHHHHHHHHHHH
Confidence 8 777777555544
No 342
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.99 E-value=1.7e+02 Score=36.28 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=70.7
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCC---CCCCCCCCCCccchHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHP---DTIGPDGVASNESYQSDLL 149 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHp---e~~~~~~~~~~~~~~~dl~ 149 (566)
..+++||+|.|-+...|. ...|++ +.++++.+++ .| +-.|.+..+|.... ...+. .+..+... +.+.
T Consensus 5 ~~~~kvlviG~G~~~igq-----~~E~d~sg~q~~~aL~e-~G-~~vi~v~~np~~~~~d~~~ad~-~y~ep~~~-e~l~ 75 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQ-----AAEFDYSGTQACLALKE-EG-YQVVLVNPNPATIMTDPAPADT-VYFEPLTV-EFVK 75 (1068)
T ss_pred CCCCEEEEECCCcchhcc-----hhhhhhHHHHHHHHHHH-cC-CEEEEEeCCcchhhcCcccCCe-eEECCCCH-HHHH
Confidence 468999999999876542 467887 7889999986 45 35788888875321 00110 01111122 2344
Q ss_pred HHHHHHHcCCcEEEeccCCCHHH--HHHHH--HHHHHcCCCCcE--EeeecccCCHHHHHHHhccCCCCCCHH
Q 008423 150 YLKKKVDAGADLIITQLFYDTDM--FLKFV--NDCRQIGITCPI--VPGIMPINNYKGFLRMTGFCKTKIPAE 216 (566)
Q Consensus 150 ~Lk~KvdAGAdFiITQlffD~d~--f~~f~--~~~R~~Gi~vPI--IpGImPI~s~~~~~r~~~l~Gv~VP~~ 216 (566)
.+.+| .+.|.|++-+--+... ..... ..+++.|+.++- ...+.-.++...++.+.+-.|+.+|..
T Consensus 76 ~ii~~--e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~ 146 (1068)
T PRK12815 76 RIIAR--EKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPES 146 (1068)
T ss_pred HHHHH--hCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCc
Confidence 44444 3789999855433221 11111 134555633211 012223344445556667778888764
No 343
>PRK06267 hypothetical protein; Provisional
Probab=34.71 E-value=2.4e+02 Score=30.31 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=55.1
Q ss_pred CchhHHHHHHHHHhhcCCceeEEecc-ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-cCCCcccHHHHHH
Q 008423 31 TADLTLDIANRMQNTICVETMMHLTC-TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ-IQGGFACALDLVK 108 (566)
Q Consensus 31 ~~~~Sl~la~~lq~~~Gle~i~HLTC-rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~-~~~~F~~A~dLVk 108 (566)
+.+..++....+++ .|+.++.|+.. -+-+.+++.+.+..+.++++..+-+..=- |..+..... ....-...+.+|.
T Consensus 151 s~ed~~~~l~~ak~-aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~-P~pGTp~~~~~~~s~~e~lr~ia 228 (350)
T PRK06267 151 PLDKIKEMLLKAKD-LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLN-PQKGTIFENKPSVTTLEYMNWVS 228 (350)
T ss_pred CHHHHHHHHHHHHH-cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeee-ECCCCcCCCCCCCCHHHHHHHHH
Confidence 45567787888875 89999999777 46688999999999999998864221111 222211111 1112223555566
Q ss_pred HHHHHcCCceeEEEEec
Q 008423 109 HIRSAYGDYFGITVAGY 125 (566)
Q Consensus 109 ~Ir~~~gd~F~IGVAgy 125 (566)
..|-.++ ...| +++.
T Consensus 229 ~~Rl~lP-~~~I-~~~~ 243 (350)
T PRK06267 229 SVRLNFP-KIKI-ITGT 243 (350)
T ss_pred HHHHHCC-CCCc-chhh
Confidence 6666565 3566 5543
No 344
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.63 E-value=2.4e+02 Score=31.09 Aligned_cols=126 Identities=15% Similarity=0.235 Sum_probs=68.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIGP 135 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~~ 135 (566)
|.++.+.+.+.++.+.+.|++.|..+..+....+.. . .. ....+|++.|.+..+. ..|-.. .+|.. -+.
T Consensus 173 rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~---~-~~-~~~~~Ll~~l~~~~g~-~~i~~~~~~p~~----l~~ 242 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKD---I-GD-VPFSELLYAVAEIDGV-ERIRFTTGHPRD----LDE 242 (437)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCC---C-CC-CCHHHHHHHHhcCCCc-cEEEEeccCccc----CCH
Confidence 445778888888888889999988664444322110 0 00 1356777777654332 223321 23432 111
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcE-----------EEecc--CCCHHHHHHHHHHHHHc--CCC--CcEEeeecccCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADL-----------IITQL--FYDTDMFLKFVNDCRQI--GIT--CPIVPGIMPINN 198 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdF-----------iITQl--ffD~d~f~~f~~~~R~~--Gi~--vPIIpGImPI~s 198 (566)
+.++.|+ +...|..+ +.-.| -|..+.+.+-++.+|++ |+. .-+|.|+ |=.|
T Consensus 243 ----------ell~~~~-~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~-PgET 310 (437)
T PRK14331 243 ----------DIIKAMA-DIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGF-PTET 310 (437)
T ss_pred ----------HHHHHHH-cCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEEC-CCCC
Confidence 2233333 22123332 22122 47888899999999987 653 3467776 5556
Q ss_pred HHHHHH
Q 008423 199 YKGFLR 204 (566)
Q Consensus 199 ~~~~~r 204 (566)
...+..
T Consensus 311 ~ed~~~ 316 (437)
T PRK14331 311 EEDFEE 316 (437)
T ss_pred HHHHHH
Confidence 655543
No 345
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=34.61 E-value=1.3e+02 Score=30.22 Aligned_cols=153 Identities=13% Similarity=0.183 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
+..+.+.+...-+ .|.-.+..+.+++.+.-+.+.+.+ .|+++ --|- .. .+.+.++.++++ |
T Consensus 41 ~~~~~i~~~~~~~--v~~qv~~~~~e~~i~~a~~l~~~~-~~~~i---KIP~--------T~---~gl~ai~~L~~~-g- 101 (211)
T cd00956 41 AVLKEICEIIDGP--VSAQVVSTDAEGMVAEARKLASLG-GNVVV---KIPV--------TE---DGLKAIKKLSEE-G- 101 (211)
T ss_pred HHHHHHHHhcCCC--EEEEEEeCCHHHHHHHHHHHHHhC-CCEEE---EEcC--------cH---hHHHHHHHHHHc-C-
Confidence 3444444433333 344446777777766666665552 24443 1111 10 356666666654 4
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCH--------HHHHHHHHHHHHcCCCCc
Q 008423 117 YFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDT--------DMFLKFVNDCRQIGITCP 188 (566)
Q Consensus 117 ~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~--------d~f~~f~~~~R~~Gi~vP 188 (566)
..+++..-= .......-++|||+| |+-++=-. +.+.+..+.++..|+..-
T Consensus 102 -i~v~~T~V~--------------------s~~Qa~~Aa~AGA~y-vsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tk 159 (211)
T cd00956 102 -IKTNVTAIF--------------------SAAQALLAAKAGATY-VSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTK 159 (211)
T ss_pred -CceeeEEec--------------------CHHHHHHHHHcCCCE-EEEecChHhhcCCCHHHHHHHHHHHHHHcCCCce
Confidence 344433200 122234446689999 55444332 334566777777775433
Q ss_pred -EEeeecccCCHHHHHHHhccCC---CCCCHHHHHHhCCCCCCHHHHHHH
Q 008423 189 -IVPGIMPINNYKGFLRMTGFCK---TKIPAEITAALEPIKDNEEAVKAY 234 (566)
Q Consensus 189 -IIpGImPI~s~~~~~r~~~l~G---v~VP~~il~~Le~~kddde~vk~~ 234 (566)
+.+|++ |...+.. +-..| +.+|.+++++|....--++.++.+
T Consensus 160 il~As~r---~~~ei~~-a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F 205 (211)
T cd00956 160 ILAASIR---NPQHVIE-AALAGADAITLPPDVLEQLLKHPLTDKGVEKF 205 (211)
T ss_pred EEecccC---CHHHHHH-HHHcCCCEEEeCHHHHHHHhcCccHHHHHHHH
Confidence 567765 5555554 22345 669999999997655444445443
No 346
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=34.49 E-value=2e+02 Score=30.76 Aligned_cols=101 Identities=10% Similarity=-0.002 Sum_probs=65.0
Q ss_pred hhccCCCcCEEEec-CCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC---CHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 11 TAWWPTTRHSATSR-WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM---PVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 11 ~~~~~~~p~fVsVT-wgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~---n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
..+.+.....+.|+ .+..--..+.+.+.++.+++ .|+.+..+.+.... +.+.+.+....+.++||...-+-.-|+
T Consensus 214 ~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~-aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~ 292 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHCNEITEEFAEAMKKLRT-VNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDK 292 (331)
T ss_pred HHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHH-cCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCC
Confidence 33434344455555 22211234567777777775 79988887775444 456688888888999999998888998
Q ss_pred CCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 87 PHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 87 p~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
..+..++. -.-..+.++++.+++...
T Consensus 293 ~~g~~~f~---~~~~~~~~i~~~l~~~~s 318 (331)
T TIGR00238 293 VQGAKHFL---VPDAEAAQIVKELARLTS 318 (331)
T ss_pred CCCccccc---CCHHHHHHHHHHHHhcCC
Confidence 87654321 223347888888877644
No 347
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.48 E-value=6.7e+02 Score=27.66 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHcCCc---eeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE--Eec-----------
Q 008423 102 CALDLVKHIRSAYGDY---FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI--ITQ----------- 165 (566)
Q Consensus 102 ~A~dLVk~Ir~~~gd~---F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi--ITQ----------- 165 (566)
.-.+|++.|++.++.. ..|.+-++|..- +. +.++.|++ +|.+.+ =-|
T Consensus 109 ~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~l----t~----------e~l~~l~~---~G~~rvslGvQS~~~~~L~~l~ 171 (430)
T PRK08208 109 ELEKLFDSVERVLGVDLGNIPKSVETSPATT----TA----------EKLALLAA---RGVNRLSIGVQSFHDSELHALH 171 (430)
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEeCcCcC----CH----------HHHHHHHH---cCCCEEEEecccCCHHHHHHhC
Confidence 4567888888765422 246666777532 11 33444443 576643 112
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC---cEEeeecccCCHHHHHH
Q 008423 166 LFYDTDMFLKFVNDCRQIGITC---PIVPGIMPINNYKGFLR 204 (566)
Q Consensus 166 lffD~d~f~~f~~~~R~~Gi~v---PIIpGImPI~s~~~~~r 204 (566)
=.++.+.+.+-++.++++|++. -+|.|+ |-+|...+.+
T Consensus 172 R~~~~~~~~~ai~~l~~~g~~~i~~dlI~Gl-P~qt~e~~~~ 212 (430)
T PRK08208 172 RPQKRADVHQALEWIRAAGFPILNIDLIYGI-PGQTHASWME 212 (430)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCC-CCCCHHHHHH
Confidence 2346677778888888888642 345665 5566665543
No 348
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.34 E-value=5.3e+02 Score=26.51 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
..+.+|++ +|+|.|+--... +....+++.+++.|++.|++.
T Consensus 190 ~~v~~l~~---~~~d~v~~~~~~--~~~~~~~~~~~~~g~~~~~~~ 230 (344)
T cd06345 190 PILQQIKA---ADPDVIIAGFSG--NVGVLFTQQWAEQKVPIPTIG 230 (344)
T ss_pred HHHHHHHh---cCCCEEEEeecC--chHHHHHHHHHHcCCCCceEE
Confidence 55666654 589988775533 245578899999998877654
No 349
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=34.26 E-value=3.1e+02 Score=30.04 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=30.9
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 92 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~ 92 (566)
+...+|=-. +++..++.|++|+++|++.|+ ||-|-|..+.+
T Consensus 117 ~~wfQLY~~--~r~~~~~ll~RA~~aG~~alv-lTvD~pv~g~R 157 (361)
T cd04736 117 DLWFQLYVV--HRELAELLVKRALAAGYTTLV-LTTDVAVNGYR 157 (361)
T ss_pred CeEEEEEec--CHHHHHHHHHHHHHcCCCEEE-EecCCCCCCCc
Confidence 445555553 477888999999999988765 89999877654
No 350
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.21 E-value=6.5e+02 Score=27.47 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=60.9
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc--eeEEEEecCCCCCCCCCCCCCCCccchHHHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY--FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYL 151 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~--F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~L 151 (566)
.+|+.|..-.|.|.-- .-..-.+|++.|++.++-. -.|.+-++|+.- +. +.++.|
T Consensus 65 ~~i~~iy~GGGTps~l---------~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~l----t~----------e~l~~l 121 (400)
T PRK07379 65 QPLQTVFFGGGTPSLL---------SVEQLERILTTLDQRFGIAPDAEISLEIDPGTF----DL----------EQLQGY 121 (400)
T ss_pred CceeEEEECCCccccC---------CHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcC----CH----------HHHHHH
Confidence 3577777666666532 1224677888888765422 356666777543 11 234444
Q ss_pred HHHHHcCCcEE--Eecc-----------CCCHHHHHHHHHHHHHcCCC---CcEEeeecccCCHHHHHH
Q 008423 152 KKKVDAGADLI--ITQL-----------FYDTDMFLKFVNDCRQIGIT---CPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 152 k~KvdAGAdFi--ITQl-----------ffD~d~f~~f~~~~R~~Gi~---vPIIpGImPI~s~~~~~r 204 (566)
+ ++|.+.+ =-|= .++.+...+-++.+|++|++ +-+|.|+ |=+|.+.+.+
T Consensus 122 ~---~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~Gl-Pgqt~e~~~~ 186 (400)
T PRK07379 122 R---SLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGL-PHQTLEDWQA 186 (400)
T ss_pred H---HCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC-CCCCHHHHHH
Confidence 3 3787643 1222 36777788888899999865 3456666 3466665543
No 351
>PRK07094 biotin synthase; Provisional
Probab=34.17 E-value=4.2e+02 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.5
Q ss_pred ccCCHHHHHHHHHHHHHcCC
Q 008423 57 TNMPVEKIDHALQTIKSNGI 76 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GI 76 (566)
+..+.++..+.+..++++|+
T Consensus 160 ~~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 160 PGMSFENRIACLKDLKELGY 179 (323)
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 34556666666666666665
No 352
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=34.10 E-value=5e+02 Score=26.13 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
+.+.+++++..+.|.+.|+..+. ....-+.+++..-+..+-..+. |.+||.|-....
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avc------------------v~p~~v~~a~~~l~~~~v~v~t-VigFP~G~~~~~---- 70 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVC------------------VNPSYVPLAKELLKGTEVRICT-VVGFPLGASTTD---- 70 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEE------------------eCHHHHHHHHHHcCCCCCeEEE-EeCCCCCCCcHH----
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEeccCCCH------HHHHHHHHHHHHc--CCCCcEEeeecccCCHHHHHHHhccC
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIITQLFYDT------DMFLKFVNDCRQI--GITCPIVPGIMPINNYKGFLRMTGFC 209 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~------d~f~~f~~~~R~~--Gi~vPIIpGImPI~s~~~~~r~~~l~ 209 (566)
.-+...++=+++|||-+-..+.+.. +.+.+-+..+++. |+.+-+|.---.++. ..+.+..+++
T Consensus 71 --------~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~-~ei~~a~~ia 141 (211)
T TIGR00126 71 --------VKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTD-EEIRKACEIC 141 (211)
T ss_pred --------HHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCH-HHHHHHHHHH
No 353
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=34.05 E-value=59 Score=36.73 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=62.0
Q ss_pred HhHHHHHHHHhhcCCcCCccCCCCCCCChhHHHHHHHH-----------HHHHhcCceeecCCCCCCCCCCCCCcccccC
Q 008423 363 VEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQL-----------GKINVKGFLTINSQPAVNGERSDSSSVGWGG 431 (566)
Q Consensus 363 ~~di~~~f~~y~~g~~~~lPw~~~~~l~~et~~i~~~L-----------~~ln~~g~~ti~SQP~vng~~S~d~~~GwGp 431 (566)
.+....+|.+|+.|+...++|++-.|+.+|.-.=.+.| ..|++-.++.+|+ |=|-
T Consensus 26 ~~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLnG--------------GlGT 91 (469)
T PLN02474 26 KSGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLNG--------------GLGT 91 (469)
T ss_pred HHHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccchhHHHHHHhcEEEEEecC--------------Cccc
Confidence 57778999999999999999998555544432111111 1358888998876 7777
Q ss_pred CCceeeeeeeeeeecChhhHHHHHHhhc----C-CCceeEEEEcCCC
Q 008423 432 PGGYVYQKAYLEFFCSPEKLTALVDKSK----A-LPFITFMAVNKEG 473 (566)
Q Consensus 432 ~~GyvyQKay~Eff~~~~~~~~l~~~~~----~-~~~~~y~a~n~~g 473 (566)
+=|+..-|.-+|.--...-++-..++++ . ...|-+|.-|+.-
T Consensus 92 rmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~ 138 (469)
T PLN02474 92 TMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFN 138 (469)
T ss_pred ccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCc
Confidence 7777777777773111223332333332 2 3578888888754
No 354
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=33.99 E-value=1.9e+02 Score=31.70 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCcEEEec------cCC----CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCH--
Q 008423 148 LLYLKKKVDAGADLIITQ------LFY----DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPA-- 215 (566)
Q Consensus 148 l~~Lk~KvdAGAdFiITQ------lff----D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~-- 215 (566)
.+..+.=++||||+|+.+ ..+ +...+. +.+++. ++|||.|- +.|++.++++.+ +|+..=.
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~---~~i~~~--~IPVI~G~--V~t~e~A~~~~~-aGaDgV~~G 216 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLK---EFIGEL--DVPVIAGG--VNDYTTALHLMR-TGAAGVIVG 216 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHH---HHHHHC--CCCEEEeC--CCCHHHHHHHHH-cCCCEEEEC
Confidence 344455568999998853 331 344444 444444 48999854 778887776665 5543200
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEcCCchHHHHHHHHHcCC
Q 008423 216 ----EITAALEPIKDNEEAVKAYGIHLGAEMCKKILA-HGIKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 216 ----~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~-~Gv~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
..........-. ...-+.-+.+..+++++ .|-+.+|+..-+.-..-..|.+.|.+
T Consensus 217 ~gg~~~~~~~lg~~~p----~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAl 276 (369)
T TIGR01304 217 PGGANTTRLVLGIEVP----MATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIAC 276 (369)
T ss_pred CCCCcccccccCCCCC----HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHc
Confidence 000000000000 00011122233344443 34456999988876666666666644
No 355
>PRK14017 galactonate dehydratase; Provisional
Probab=33.93 E-value=5.1e+02 Score=27.94 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE-ecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLA-LRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILa-LrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
+.+++.+.+.++.+.|++.+=+ +.|+.+.. .....+....+.|+.+|+..|+.+.|.+=+|- +- +.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~-----~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~-~w----~~--- 190 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYI-----DSPRKVDAAVARVAAVREAVGPEIGIGVDFHG-RV----HK--- 190 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCcccc-----ccHHHHHHHHHHHHHHHHHhCCCCeEEEECCC-CC----CH---
Confidence 5677777778888899988753 22222110 01123445678899999999887888776652 22 22
Q ss_pred CCccchHHHHHHHHHHHH-cCCcEEEeccCC--CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCH
Q 008423 139 ASNESYQSDLLYLKKKVD-AGADLIITQLFY--DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPA 215 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~Kvd-AGAdFiITQlff--D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~ 215 (566)
.+-.++.++++ .|.. ++=|++- |.+.+.+ +|++ ..+||..|=. +.+...+.++.+.-.+.+-
T Consensus 191 -------~~A~~~~~~l~~~~~~-~iEeP~~~~d~~~~~~----L~~~-~~~pIa~dEs-~~~~~~~~~li~~~a~d~v- 255 (382)
T PRK14017 191 -------PMAKVLAKELEPYRPM-FIEEPVLPENAEALPE----IAAQ-TSIPIATGER-LFSRWDFKRVLEAGGVDII- 255 (382)
T ss_pred -------HHHHHHHHhhcccCCC-eEECCCCcCCHHHHHH----HHhc-CCCCEEeCCc-cCCHHHHHHHHHcCCCCeE-
Confidence 23344444443 3444 6779994 4444433 4443 3589888765 5667777665443222211
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 216 EITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 216 ~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
. .+ -.+-=|+.-+.++++.....|++
T Consensus 256 ------~-~d----~~~~GGit~~~~ia~~A~~~gi~ 281 (382)
T PRK14017 256 ------Q-PD----LSHAGGITECRKIAAMAEAYDVA 281 (382)
T ss_pred ------e-cC----ccccCCHHHHHHHHHHHHHcCCe
Confidence 0 00 01222566677777777767643
No 356
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=33.91 E-value=6.9e+02 Score=29.11 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=75.4
Q ss_pred HHHHHhhcCCceeEEeccccCCHH-HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc
Q 008423 39 ANRMQNTICVETMMHLTCTNMPVE-KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117 (566)
Q Consensus 39 a~~lq~~~Gle~i~HLTCrd~n~~-~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~ 117 (566)
.+.++ .+|++++.=+.-.+.+.+ +++..-+.+.+.|+.-++ .=-...+ ..|..++|...++.+.+. ...
T Consensus 365 Ienvr-~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~--~~~~~~G------g~Gai~LA~aVveA~~~~-~s~ 434 (557)
T PRK13505 365 IENIR-KFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVAL--SEVWAKG------GEGGVELAEKVVELIEEG-ESN 434 (557)
T ss_pred HHHHH-HcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEE--ecccccC------CcchHHHHHHHHHHHhcC-CCC
Confidence 34444 489999999988888765 777777777999997543 2222222 245666777777766532 223
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC-CCcEE
Q 008423 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGI-TCPIV 190 (566)
Q Consensus 118 F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi-~vPII 190 (566)
|.. .|+... +.++-++.+.+|+ .||+-+ .|+..+- +=++++.+.|. ++||.
T Consensus 435 f~~---lY~~d~-------------sl~eKIe~IAkkI-YGA~~V----~~s~~A~-kqL~~~e~~Gf~~lPVC 486 (557)
T PRK13505 435 FKP---LYDDED-------------SLEEKIEKIATKI-YGAKGV----EFSPKAK-KQLKQIEKNGWDKLPVC 486 (557)
T ss_pred Cce---ecCCCC-------------cHHHHHHHHHHHc-cCCCCe----eECHHHH-HHHHHHHHcCCCCCCeE
Confidence 433 455432 2346688888887 677644 3666654 44677778886 47874
No 357
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=33.90 E-value=3.7e+02 Score=27.40 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=63.9
Q ss_pred HHHHHHH-HHcCCcEEEe--------------ccCCCHHHHHHHHHHHHHc--C-CCCcEEeeecccCCHHHHHHHhccC
Q 008423 148 LLYLKKK-VDAGADLIIT--------------QLFYDTDMFLKFVNDCRQI--G-ITCPIVPGIMPINNYKGFLRMTGFC 209 (566)
Q Consensus 148 l~~Lk~K-vdAGAdFiIT--------------QlffD~d~f~~f~~~~R~~--G-i~vPIIpGImPI~s~~~~~r~~~l~ 209 (566)
..+..++ +++||+-+.- +...+.+.+.+-++.++++ + .+++|+++.=-. +.
T Consensus 86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~-----------~~ 154 (243)
T cd00377 86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDAL-----------LA 154 (243)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCch-----------hc
Confidence 4443333 5589986655 4567888888777777764 3 367777763100 00
Q ss_pred CCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCchHHHHHHHHHcC
Q 008423 210 KTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLG 273 (566)
Q Consensus 210 Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l~ 273 (566)
| ..|++-+++.++...+.|++++-+-+....+.+.++.++++
T Consensus 155 ~----------------------~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~ 196 (243)
T cd00377 155 G----------------------EEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPD 196 (243)
T ss_pred c----------------------CCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCC
Confidence 0 23567788888899999999999998888888888888754
No 358
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=33.83 E-value=6.1e+02 Score=26.98 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHHcCCc-EEEe---ccCCCHHHHHHHHHHHHHcCCCCcEEee----------ecccCCHHHHHHHhcc
Q 008423 143 SYQSDLLYLKKKVDAGAD-LIIT---QLFYDTDMFLKFVNDCRQIGITCPIVPG----------IMPINNYKGFLRMTGF 208 (566)
Q Consensus 143 ~~~~dl~~Lk~KvdAGAd-FiIT---QlffD~d~f~~f~~~~R~~Gi~vPIIpG----------ImPI~s~~~~~r~~~l 208 (566)
++++-++.+++-.+.|+. +.++ -+.++.+.+.++++.+++.+.++.+..- -..+.+...+.++.+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lke- 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKE- 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH-
Confidence 344445555555666886 4444 4567899999999999988665655431 122345666666544
Q ss_pred CCCC-C--------CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEcCCchHHHHHHHHHcCC
Q 008423 209 CKTK-I--------PAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG--IKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 209 ~Gv~-V--------P~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~G--v~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
.|+. + ++++.+.+.+.+. ..+-..+.++.+.+.| +...=++-++ +....+++.+..
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~--------~~~~~~~~i~~a~~~Gi~v~s~~i~G~~--Et~ed~~~~l~~ 216 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKL--------STAEWIEIIKTAHKLGIPTTATIMYGHV--ETPEHWVDHLLI 216 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCC--------CHHHHHHHHHHHHHcCCcccceEEEecC--CCHHHHHHHHHH
Confidence 2332 2 2344444443221 2233467777778777 2222255555 333445444443
No 359
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.53 E-value=5.1e+02 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 008423 63 KIDHALQTIKSNGIQNVL 80 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNIL 80 (566)
.+++.+..++++|++.|=
T Consensus 17 ~~~e~~~~~~~~G~~~iE 34 (284)
T PRK13210 17 SWEERLVFAKELGFDFVE 34 (284)
T ss_pred CHHHHHHHHHHcCCCeEE
Confidence 467889999999999994
No 360
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.45 E-value=1.2e+02 Score=31.49 Aligned_cols=104 Identities=17% Similarity=0.050 Sum_probs=60.0
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc-c-----H-HHHHHHHHHHcCCceeEEEEe
Q 008423 52 MHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA-C-----A-LDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 52 ~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~-~-----A-~dLVk~Ir~~~gd~F~IGVAg 124 (566)
..+-|+.++.-.++..-..|...| .|++-+.+-+- .---|+ | + ..-++.+|+..++...|||-+
T Consensus 119 ~~i~~TRKt~Pg~r~~~k~Av~~G-------Gg~~HR~~L~d--~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev 189 (268)
T cd01572 119 ARILDTRKTTPGLRLLEKYAVRCG-------GGDNHRFGLSD--AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEV 189 (268)
T ss_pred EEEEeCCCCChhhHHHHHHHHHhC-------CCccccCCCcc--eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEE
Confidence 345566666666777777776666 55554433210 000111 0 1 223677888777667799987
Q ss_pred cCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 125 YPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 125 yPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
+- ++.+++=+++|||+|.--.|+ ++.+.+.++.+++ ++||
T Consensus 190 ~s---------------------~eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi 229 (268)
T cd01572 190 ET---------------------LEQLKEALEAGADIIMLDNMS-PEELREAVALLKG---RVLL 229 (268)
T ss_pred CC---------------------HHHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcE
Confidence 32 233445567999999888876 5665555554432 4665
No 361
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=33.30 E-value=71 Score=35.94 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=50.2
Q ss_pred HHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCce
Q 008423 39 ANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYF 118 (566)
Q Consensus 39 a~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F 118 (566)
+..+.+ .|- +++. |||.. ..++..++.++++||..++++.||-. +..|..|-+++++. | +
T Consensus 145 V~~i~~-~GG-TiLG-TSR~~--~~~~~iv~~L~~~~I~~L~vIGGdgT------------~~~A~~L~ee~~~~-g--~ 204 (459)
T PTZ00286 145 VKTIHR-LGG-TILG-SSRGG--FDPKVMVDTLIRHGINILFTLGGDGT------------HRGALAIYKELRRR-K--L 204 (459)
T ss_pred hhhHHh-CCC-ceec-cCCCh--hhHHHHHHHHHHcCCCEEEEeCCchH------------HHHHHHHHHHHHHh-C--C
Confidence 444443 344 4454 56643 57888999999999999999999964 34578888888754 4 5
Q ss_pred eEEEEecCCC
Q 008423 119 GITVAGYPEG 128 (566)
Q Consensus 119 ~IGVAgyPEg 128 (566)
.|.|.+-|--
T Consensus 205 ~I~VIGIPKT 214 (459)
T PTZ00286 205 NISVVGIPKT 214 (459)
T ss_pred CceEEEeccc
Confidence 7888888853
No 362
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=3.9e+02 Score=28.08 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCC--CCCCCCcc---------ccCCC--cccHHHHH----HHHHHHcCCceeEEEEecCC
Q 008423 65 DHALQTIKSNGIQNVLALRGDP--PHGQDKFV---------QIQGG--FACALDLV----KHIRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 65 ~~~L~~a~~~GIrNILaLrGDp--p~~~~~~~---------~~~~~--F~~A~dLV----k~Ir~~~gd~F~IGVAgyPE 127 (566)
+..|..|++.|++.++-+.--- |+...++. +.+.. |.+|..++ +.-|++||-.+.-++-++-.
T Consensus 88 dNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvf 167 (315)
T KOG1431|consen 88 DNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVF 167 (315)
T ss_pred hhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCceeeecccccc
Confidence 4668889999999887553221 22222221 22333 44566554 23455688667777777766
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE--------eccCCCHHHHHHHHHHHHHcCCCCcEEeee
Q 008423 128 GHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII--------TQLFYDTDMFLKFVNDCRQIGITCPIVPGI 193 (566)
Q Consensus 128 gHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI--------TQlffD~d~f~~f~~~~R~~Gi~vPIIpGI 193 (566)
|.-+.-+++ -++. +...+.++.+-...|+|-++ -|++|..|....|+--+|+-.---|||.|.
T Consensus 168 GphDNfnpe--~sHV-lPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~~vEpiils~ 238 (315)
T KOG1431|consen 168 GPHDNFNPE--NSHV-LPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYEGVEPIILSV 238 (315)
T ss_pred CCCCCCCcc--cccc-hHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhcCccceEecc
Confidence 643322221 0111 12345555555567997543 499998888888888888754334777664
No 363
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=33.24 E-value=4.3e+02 Score=28.48 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEE-EEecC---CCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGIT-VAGYP---EGHPDTIGP 135 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IG-VAgyP---EgHpe~~~~ 135 (566)
+...|.+.++.+.++||+.|++.. =|....+....+-..-.--..-|+.||+.+++-.-|. |+-=| -||--.-..
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFg-v~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~ 127 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFG-IPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILKD 127 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccC
Confidence 678899999999999999999664 4432111100000000013445667788776422111 11111 334111000
Q ss_pred CCCCCccchHHHHHHHHH----HHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC-CCcE
Q 008423 136 DGVASNESYQSDLLYLKK----KVDAGADLIITQLFYDTDMFLKFVNDCRQIGI-TCPI 189 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~----KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi-~vPI 189 (566)
. + -+-+.-++.|.+ -.+||||++--==--|-.. ....+.+.++|. ++||
T Consensus 128 ~-~---idND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~~~v~I 181 (314)
T cd00384 128 D-Y---VDNDATLELLAKIAVSHAEAGADIVAPSDMMDGRV-AAIREALDEAGFSDVPI 181 (314)
T ss_pred C-c---CccHHHHHHHHHHHHHHHHcCCCeeecccccccHH-HHHHHHHHHCCCCCCce
Confidence 0 0 001133444433 3479999886544444433 455667777886 3553
No 364
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=33.11 E-value=4.9e+02 Score=26.33 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEec-CCCCCCCCCCCCCCCcc
Q 008423 64 IDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGY-PEGHPDTIGPDGVASNE 142 (566)
Q Consensus 64 L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgy-PEgHpe~~~~~~~~~~~ 142 (566)
+++.+..+...||...+++...... ++. ..++..++ .+ +.| +|++.. |.. . .+
T Consensus 30 ~e~l~~~m~~~gV~~aV~vq~~~~~-----------~~n-~~~~~~~~-~~-~r~-~g~~~~~p~~-~----~~------ 83 (263)
T cd01311 30 IDDLRALRSTLGIDRVVIVQASIYG-----------ADN-SNLLDALA-SN-GKA-RGGATVDPRT-T----TD------ 83 (263)
T ss_pred HHHHHHHHHHhCCCcEEEeCccccC-----------Cch-HHHHHHHh-hC-CCe-EEEEEECCCC-C----CH------
Confidence 4455555678999999998754211 111 23445555 34 445 454443 532 1 11
Q ss_pred chHHHHHHHHHHHHcCCcEE---E-eccCCCHHHHHHHHHHHHHcCCCCcEEee
Q 008423 143 SYQSDLLYLKKKVDAGADLI---I-TQLFYDTDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 143 ~~~~dl~~Lk~KvdAGAdFi---I-TQlffD~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
.+++++. +.|..-| . .|-+.|.+.+.+.++.|.+.|..+-|..|
T Consensus 84 ---~~l~~~~---~~g~rGvRl~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~ 131 (263)
T cd01311 84 ---AELKEMH---DAGVRGVRFNFLFGGVDNKDELDEIAKRAAELGWHVQVYFD 131 (263)
T ss_pred ---HHHHHHH---HCCCeEEEEecccCCCCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 6677773 3565433 2 24456888888999999998855444433
No 365
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=32.90 E-value=2.1e+02 Score=31.89 Aligned_cols=108 Identities=6% Similarity=0.025 Sum_probs=74.6
Q ss_pred cccccchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEecc---ccCCHHHHHHHHHHHHHcCCCEEE
Q 008423 4 RTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTC---TNMPVEKIDHALQTIKSNGIQNVL 80 (566)
Q Consensus 4 ~~~~~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTC---rd~n~~~L~~~L~~a~~~GIrNIL 80 (566)
|.+++=...|.+..+.+|.+-.+.---....+.+.++.+++ .|+.+..+.+- .|-+.+.+.+...++.++||+---
T Consensus 203 RIT~ell~~Lk~~~~~~v~~h~nhp~Eit~~a~~Al~~L~~-aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYY 281 (417)
T TIGR03820 203 RITDELVAILKKHHPVWLNTHFNHPREITASSKKALAKLAD-AGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYY 281 (417)
T ss_pred ccCHHHHHHHHhcCCeEEEEeCCChHhChHHHHHHHHHHHH-cCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeece
Confidence 44444445555666788877665443345667777777775 69887666543 344667788888888999999988
Q ss_pred EecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 81 ALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 81 aLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+--.|+..+..++. -....+.++++.+|....
T Consensus 282 l~~~d~v~G~~hFr---v~~~~g~~I~~~lr~~~s 313 (417)
T TIGR03820 282 LYQCDLSEGLSHFR---TPVGKGIEIIESLIGHTS 313 (417)
T ss_pred eeeccCCCCccccc---CcHHHHHHHHHHHHHhCC
Confidence 88889988765542 233458999999987654
No 366
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=32.86 E-value=5.3e+02 Score=26.05 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.4
Q ss_pred cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 157 AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 157 AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
+++|.|+... + ......|++.+++.|++.+++.
T Consensus 189 ~~~~~vi~~~-~-~~~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 189 ANPDAVFFGG-Y-YPEAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred cCCCEEEEcC-c-chhHHHHHHHHHHcCCCCcEEe
Confidence 5899998755 3 3445678999999999877653
No 367
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=32.37 E-value=6.2e+02 Score=26.68 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.+++.+.+..+.+.|++.+=+=-|..... ...+....+.|+.||+..|+.+.|.+=+| .+ .+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------~~~~~~d~~~v~~ir~~~g~~~~l~vDaN-~~----~~~---- 202 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------GEDLREDLARVRAVREAVGPDVDLMVDAN-GR----WDL---- 202 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------hHHHHHHHHHHHHHHHhhCCCCEEEEECC-CC----CCH----
Confidence 577777888888899999886433321110 01234578889999999988788877442 11 122
Q ss_pred CccchHHHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhcc--CCCCCCHH
Q 008423 140 SNESYQSDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGF--CKTKIPAE 216 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l--~Gv~VP~~ 216 (566)
.+..++.++++ .|.+ +|=|++... . .+.+..+|++ ..+||..|=. +.+...+.++.+. +.+-.++
T Consensus 203 ------~~a~~~~~~l~~~~i~-~iEqP~~~~-~-~~~~~~l~~~-~~ipi~~dE~-~~~~~~~~~~i~~~~~d~v~~k- 270 (357)
T cd03316 203 ------AEAIRLARALEEYDLF-WFEEPVPPD-D-LEGLARLRQA-TSVPIAAGEN-LYTRWEFRDLLEAGAVDIIQPD- 270 (357)
T ss_pred ------HHHHHHHHHhCccCCC-eEcCCCCcc-C-HHHHHHHHHh-CCCCEEeccc-cccHHHHHHHHHhCCCCEEecC-
Confidence 33444444443 3554 466998742 2 2234455554 4688877654 5566666665542 2221111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 217 ITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 217 il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
+ .+-=|+.-+.++++...+.|++
T Consensus 271 ----~---------~~~GGi~~~~~i~~~a~~~g~~ 293 (357)
T cd03316 271 ----V---------TKVGGITEAKKIAALAEAHGVR 293 (357)
T ss_pred ----c---------cccCCHHHHHHHHHHHHHcCCe
Confidence 0 1222577777777777777754
No 368
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.09 E-value=3.5e+02 Score=30.83 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=67.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIG 134 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~ 134 (566)
|.++.+.+.+.+..+.+.|++.|..+..|-...+.. -..+.. ..+|++.|.+. +. ..|-.. .+|.. -+
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d----~~~~~~~l~~Ll~~I~~~-~i-~~ir~~s~~P~~----i~ 308 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKD----FEDIEYGLGDLMDEIRKI-DI-PRVRFTTSHPRD----FD 308 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCccc----ccccchHHHHHHHHHHhC-CC-ceEEEeecCccc----CC
Confidence 455778999999999999999998554443322211 011112 46788888653 32 223322 34432 11
Q ss_pred CCCCCCccchHHHHHHHHHHHHcC--CcEE-----------Eec--cCCCHHHHHHHHHHHHHcCCCC----cEEeeecc
Q 008423 135 PDGVASNESYQSDLLYLKKKVDAG--ADLI-----------ITQ--LFYDTDMFLKFVNDCRQIGITC----PIVPGIMP 195 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~KvdAG--AdFi-----------ITQ--lffD~d~f~~f~~~~R~~Gi~v----PIIpGImP 195 (566)
. +.++.|+ + +| ..++ .-. =-|+.+.+.+.++.+|+++..+ -||.|+ |
T Consensus 309 d----------eli~~m~-~--~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGf-P 374 (509)
T PRK14327 309 D----------HLIEVLA-K--GGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGF-P 374 (509)
T ss_pred H----------HHHHHHH-h--cCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeC-C
Confidence 1 2233332 2 34 2111 111 1288999999999999984333 367787 4
Q ss_pred cCCHHHHHH
Q 008423 196 INNYKGFLR 204 (566)
Q Consensus 196 I~s~~~~~r 204 (566)
=.|...|..
T Consensus 375 gET~edf~~ 383 (509)
T PRK14327 375 NETDEQFEE 383 (509)
T ss_pred CCCHHHHHH
Confidence 456655543
No 369
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=32.04 E-value=1.5e+02 Score=28.66 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=44.9
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-cCCCccc-HHHHHHHHH---HHcCCceeEEEEecC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ-IQGGFAC-ALDLVKHIR---SAYGDYFGITVAGYP 126 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~-~~~~F~~-A~dLVk~Ir---~~~gd~F~IGVAgyP 126 (566)
|.+++..+-++.+...++.||+.+++.+--.-....++.. .++.|.. ..|+|..+- +++|-.+.+|.-..|
T Consensus 14 ~~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred hcCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 5889999999999999999999998765333222111110 0123333 667776533 357766777766554
No 370
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=31.55 E-value=5.5e+02 Score=26.58 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 36 LDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 36 l~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
.+++..++. .|..++.|. |-+.+ ..+....+.|++-+- + |. ..+| +.+++.+|
T Consensus 211 k~i~~~i~~-~g~~~~lH~-cG~~~-----~~~~~l~~~~~d~~~-~--d~----------------~~dl-~~~~~~~g 263 (330)
T cd03465 211 KKVFDAIKA-LGGPVIHHN-CGDTA-----PILELMADLGADVFS-I--DV----------------TVDL-AEAKKKVG 263 (330)
T ss_pred HHHHHHHHH-cCCceEEEE-CCCch-----hHHHHHHHhCCCeEe-e--cc----------------cCCH-HHHHHHhC
Confidence 355556664 488888885 44443 345556677764322 1 21 1133 34566788
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcC-CcEEEecc-----CCCHHHHHHHHHHHH
Q 008423 116 DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAG-ADLIITQL-----FYDTDMFLKFVNDCR 181 (566)
Q Consensus 116 d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAG-AdFiITQl-----ffD~d~f~~f~~~~R 181 (566)
+..+|-...-|-......+. +...++.+++.++...+ -.||++.= -=..+++..+++.+|
T Consensus 264 ~~~~i~G~id~~~~l~~gt~------eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 264 DKACLMGNLDPIDVLLNGSP------EEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred CceEEEeCcChHHhhcCCCH------HHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHHh
Confidence 75555443333211111111 22334444444444333 35777652 224566666666655
No 371
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.54 E-value=1.8e+02 Score=31.63 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHHHH--cCCcEEEeccCC-CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHh
Q 008423 146 SDLLYLKKKVD--AGADLIITQLFY-DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMT 206 (566)
Q Consensus 146 ~dl~~Lk~Kvd--AGAdFiITQlff-D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~ 206 (566)
.+.+++++=++ +|+|+|+--.-- ..+.++++++.+|+.-.+++||+|= +.+....+.+.
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGN--V~T~e~a~~Li 169 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGN--VVTGEMVEELI 169 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEec--ccCHHHHHHHH
Confidence 56777777776 599998755444 5677889999999987789999994 66776665543
No 372
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=31.48 E-value=1.1e+02 Score=32.59 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=54.1
Q ss_pred cccccchhhccC-CCcCEEEecCCCCCC------CchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHH----------
Q 008423 4 RTCSSGWTAWWP-TTRHSATSRWGAGGS------TADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDH---------- 66 (566)
Q Consensus 4 ~~~~~~~~~~~~-~~p~fVsVTwgagG~------~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~---------- 66 (566)
-|+++...+|.+ +.+|+.-|.-|.-.. .....+++.+.+++..+++.++|=+ .+.+.+.++.
T Consensus 154 ~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGg-SGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 154 LVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA-SAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCC-CCCchHHhhhhhhhcccccc
Confidence 477888888885 688888887764331 1235677788888888999999954 4666664443
Q ss_pred -------HHHHHHHcCCCEEE
Q 008423 67 -------ALQTIKSNGIQNVL 80 (566)
Q Consensus 67 -------~L~~a~~~GIrNIL 80 (566)
.+..|.+.||+-|=
T Consensus 233 ~~g~~~e~~~kai~~GI~KiN 253 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVN 253 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEE
Confidence 57777778887664
No 373
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.45 E-value=3.3e+02 Score=28.78 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhhcCCceeEEecc-ccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 33 DLTLDIANRMQNTICVETMMHLTC-TNMPVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTC-rd~n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
+..++....+++ .|+.+....|. .+.|..++.+.+..++++|++.+.+..|-+
T Consensus 149 ~~~l~~I~~l~~-~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~ 202 (318)
T TIGR03470 149 DRAVEAIREAKA-RGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYA 202 (318)
T ss_pred HHHHHHHHHHHH-CCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence 456677777765 68877777665 456888888888888888888887765543
No 374
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.43 E-value=2.2e+02 Score=28.27 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
.++.++..+.+..+.++||+.|=+ |-|. .-....+.++.+++.... -.+.+.+.+..
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEv--g~~~-----------~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~--------- 66 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEV--GFPF-----------ASEDDFEQVRRLREALPN-ARLQALCRANE--------- 66 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEE--EHCT-----------SSHHHHHHHHHHHHHHHS-SEEEEEEESCH---------
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEE--cccc-----------cCHHHHHHhhhhhhhhcc-cccceeeeehH---------
Confidence 357788888899999999988763 2111 111356667776655433 34545554421
Q ss_pred CCCccchHHHHHH-HHHHHHcCCcEEEec-cCCC--------------HHHHHHHHHHHHHcCCCCcEEeeec
Q 008423 138 VASNESYQSDLLY-LKKKVDAGADLIITQ-LFYD--------------TDMFLKFVNDCRQIGITCPIVPGIM 194 (566)
Q Consensus 138 ~~~~~~~~~dl~~-Lk~KvdAGAdFiITQ-lffD--------------~d~f~~f~~~~R~~Gi~vPIIpGIm 194 (566)
.++++ +++-.++|++.+-.= .+=| .+.+.+.++.+|+.|..+ ..+++
T Consensus 67 --------~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~ 129 (237)
T PF00682_consen 67 --------EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCE 129 (237)
T ss_dssp --------HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEET
T ss_pred --------HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCcc
Confidence 45666 554457898865322 2223 567777888888888664 45544
No 375
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=31.06 E-value=7.5e+02 Score=27.18 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=87.4
Q ss_pred hhccCCCcCEEEe----cCCCCCCCc---hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec
Q 008423 11 TAWWPTTRHSATS----RWGAGGSTA---DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 11 ~~~~~~~p~fVsV----TwgagG~~~---~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
.+++.+..|||-= ++.+-.... ....+....++++.|-.++--.+.++-. .++.+..+.+.++|..-+|+=
T Consensus 150 y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~~~~~~G~~~~mv~- 227 (366)
T cd08148 150 YAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTAGT-FEIIERAERALELGANMLMVD- 227 (366)
T ss_pred HHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccCCH-HHHHHHHHHHHHhCCCEEEEe-
Confidence 4567777777621 111111111 2346667777778887665444444444 778888888999998755521
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
+ +....+.++.+++... +.+-+-++|.+|.-. .+++ ..-+. .-+.+|-+= ||||.+
T Consensus 228 --~-------------~~~G~~~l~~l~~~~~--~~l~IhaHrA~~ga~~~~~~---~G~~~-~~l~kl~RL--aGaD~~ 284 (366)
T cd08148 228 --V-------------LTAGFSALQALAEDFE--IDLPIHVHRAMHGAVTRSKF---HGISM-LVLAKLLRM--AGGDFI 284 (366)
T ss_pred --c-------------cccchHHHHHHHHhCc--CCcEEEeccccccccccCCC---CCcCH-HHHHHHHHH--cCCCcc
Confidence 1 1123344666776432 567778888888431 1111 00111 234444443 799998
Q ss_pred Eec-----cCCCHHHHHHHHHHHHHc
Q 008423 163 ITQ-----LFYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 163 ITQ-----lffD~d~f~~f~~~~R~~ 183 (566)
++= +-++.+...++.+.|+.-
T Consensus 285 ~~~t~~Gk~~~~~~~~~~~~~~~~~~ 310 (366)
T cd08148 285 HTGTVVGKMALEREEALGIADALTDD 310 (366)
T ss_pred ccCCcccCcCCCHHHHHHHHHHHhCc
Confidence 875 556788889999999863
No 376
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.02 E-value=6.1e+02 Score=26.15 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=74.2
Q ss_pred EeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC
Q 008423 53 HLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT 132 (566)
Q Consensus 53 HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~ 132 (566)
|..-..++.++..+....+.++||.-|=+ |=|...+.... ....|. ..+.++.|++.....-.+++-+-|-.
T Consensus 11 q~~~~~f~~~~~~~ia~~L~~~GVd~IEv--G~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~---- 82 (266)
T cd07944 11 YVNNWDFGDEFVKAIYRALAAAGIDYVEI--GYRSSPEKEFK-GKSAFC-DDEFLRRLLGDSKGNTKIAVMVDYGN---- 82 (266)
T ss_pred cccCccCCHHHHHHHHHHHHHCCCCEEEe--ecCCCCccccC-CCccCC-CHHHHHHHHhhhccCCEEEEEECCCC----
Confidence 55666788999999999999999999864 32221111100 011222 24556666554321245555554432
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHcCCcEE-EeccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 133 IGPDGVASNESYQSDLLYLKKKVDAGADLI-ITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 133 ~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-ITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
.+++.++...++|.+.| |.=...+.+...+.++.+|+.|.. |..+++=.
T Consensus 83 -------------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~--v~~~~~~a 132 (266)
T cd07944 83 -------------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYE--VFFNLMAI 132 (266)
T ss_pred -------------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCe--EEEEEEee
Confidence 12455677788899964 332456888899999999999954 66776643
No 377
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=30.97 E-value=1.4e+02 Score=29.66 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCC------HHHHHHHHHHHHHcCCCEEEEec
Q 008423 10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMP------VEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n------~~~L~~~L~~a~~~GIrNILaLr 83 (566)
...+.+...++++|---+|-.+-...++.+.... .++-.+..+|+-+-. .+.+.+....+.+.|+..+.
T Consensus 69 ~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~--~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v--- 143 (213)
T TIGR01740 69 YESKIKQGADMVNVHGVAGSESVEAAKEAASEGG--RGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV--- 143 (213)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCC--CeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE---
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEec-CCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCc-E
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGY-PEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGAD-L 161 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgy-PEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd-F 161 (566)
.+-+.++.+|+..+ .|-+=+-|. |+| .+..+. +...-+++-+++||| +
T Consensus 144 ------------------~~~~~~~~ir~~~~-~~~~vtPGI~~~g-~~~~dq----------~~~~~~~~~~~~Gad~i 193 (213)
T TIGR01740 144 ------------------CSAEEAKEIRKFTG-DFLILTPGIRLQS-KGADDQ----------QRVVTLEDAKEAGADVI 193 (213)
T ss_pred ------------------eCHHHHHHHHHhcC-CceEEeCCcCCCC-CCcCCc----------cccCCHHHHHHcCCCEE
Q ss_pred EEeccCCCHHHHHHHHHHHH
Q 008423 162 IITQLFYDTDMFLKFVNDCR 181 (566)
Q Consensus 162 iITQlffD~d~f~~f~~~~R 181 (566)
++.+.+|..+...+-++.+|
T Consensus 194 VvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 194 IVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred EEChhhcCCCCHHHHHHHhC
No 378
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=30.96 E-value=1.3e+02 Score=31.84 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=54.6
Q ss_pred ccccchhhccCCCcCEEEecCCCC-----CCCchhHHHHHHHHHhhc-CCceeEEeccccCCHHHHHHHHHHHHHcCCCE
Q 008423 5 TCSSGWTAWWPTTRHSATSRWGAG-----GSTADLTLDIANRMQNTI-CVETMMHLTCTNMPVEKIDHALQTIKSNGIQN 78 (566)
Q Consensus 5 ~~~~~~~~~~~~~p~fVsVTwgag-----G~~~~~Sl~la~~lq~~~-Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrN 78 (566)
|+++...+|.++.+|++-|.-|+- +.+...-++..+.+++.. +++.++|=. .+.+.+.+.+ +.+.||+.
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGG-SGi~~e~~~~----~i~~Gi~K 228 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGG-SGIPDDQIQE----AIKLGVAK 228 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECC-CCCCHHHHHH----HHHcCCCE
Confidence 678888899999999999987654 112345678888888877 599999954 3667766554 45699998
Q ss_pred EEEec
Q 008423 79 VLALR 83 (566)
Q Consensus 79 ILaLr 83 (566)
|=+.+
T Consensus 229 iNv~T 233 (293)
T PRK07315 229 VNVNT 233 (293)
T ss_pred EEEcc
Confidence 87553
No 379
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=30.88 E-value=4.2e+02 Score=24.21 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=84.1
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHH--HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTL--DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl--~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
..+.++..+++.+..-.......... +....+.+..+++.+.|+.+.+.. ..+......++++|+.-|. |-+..+.
T Consensus 19 ~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~g~d~v~-l~~~~~~ 96 (200)
T cd04722 19 KAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-AAVDIAAAAARAAGADGVE-IHGAVGY 96 (200)
T ss_pred HHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-hhhhHHHHHHHHcCCCEEE-EeccCCc
Confidence 34455556666555422222111122 234445556789999999887643 2222224677889997665 4333321
Q ss_pred CCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC
Q 008423 89 GQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY 168 (566)
Q Consensus 89 ~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff 168 (566)
. .....++++.+++.++ .+.+++...+....+ . . . -.++|+|++..-..+
T Consensus 97 ~----------~~~~~~~~~~i~~~~~-~~~v~~~~~~~~~~~--------------~-~-~---~~~~g~d~i~~~~~~ 146 (200)
T cd04722 97 L----------AREDLELIRELREAVP-DVKVVVKLSPTGELA--------------A-A-A---AEEAGVDEVGLGNGG 146 (200)
T ss_pred H----------HHHHHHHHHHHHHhcC-CceEEEEECCCCccc--------------h-h-h---HHHcCCCEEEEcCCc
Confidence 1 1235677888887773 478888887654211 1 1 1 235699998765544
Q ss_pred CHHH-------HHHHHHHHHHcCCCCcEEeeecccCCHHHHHH
Q 008423 169 DTDM-------FLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204 (566)
Q Consensus 169 D~d~-------f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r 204 (566)
.... ...+...++. ..++||+. .=.|++...+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~-~GGi~~~~~~~~ 187 (200)
T cd04722 147 GGGGGRDAVPIADLLLILAKR-GSKVPVIA-GGGINDPEDAAE 187 (200)
T ss_pred CCCCCccCchhHHHHHHHHHh-cCCCCEEE-ECCCCCHHHHHH
Confidence 3221 1123333333 34678754 224455444443
No 380
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=30.79 E-value=8.4e+02 Score=27.72 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=73.8
Q ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc--cHHHHHHHHHHHcCCc----eeEE--EEecCC
Q 008423 56 CTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA--CALDLVKHIRSAYGDY----FGIT--VAGYPE 127 (566)
Q Consensus 56 Crd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~--~A~dLVk~Ir~~~gd~----F~IG--VAgyPE 127 (566)
.+.++.+++...+..+.++|+..|=+-.|---.. .-.|. .--+.++.+|+..+.. ++.| ..||-.
T Consensus 29 atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~-------~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ 101 (468)
T PRK12581 29 ATRLSIEDMLPVLTILDKIGYYSLECWGGATFDA-------CIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRH 101 (468)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhh-------hhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccC
Confidence 3456777888888888889999888664432210 01121 2456677777754321 2333 123321
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE-EEeccCCCHHHHHHHHHHHHHcCCCCcEEee--ecccCCHHHHH
Q 008423 128 GHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL-IITQLFYDTDMFLKFVNDCRQIGITCPIVPG--IMPINNYKGFL 203 (566)
Q Consensus 128 gHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlffD~d~f~~f~~~~R~~Gi~vPIIpG--ImPI~s~~~~~ 203 (566)
- |+ | -.-..++.-.+.|.|. -|.=.+=|++++...++.+++.|..+-+-.+ .-|..+..-+.
T Consensus 102 y-pd--d-----------vv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~ 166 (468)
T PRK12581 102 Y-AD--D-----------IVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYL 166 (468)
T ss_pred C-cc--h-----------HHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHH
Confidence 1 11 0 1233466667999995 3555666999999999999999975333222 23555444333
No 381
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.71 E-value=5e+02 Score=27.29 Aligned_cols=110 Identities=17% Similarity=0.061 Sum_probs=64.1
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc-----ccCCCcccHHHHHHHHHHHcCCceeEEEEecC
Q 008423 52 MHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFV-----QIQGGFACALDLVKHIRSAYGDYFGITVAGYP 126 (566)
Q Consensus 52 ~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~-----~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyP 126 (566)
..+.|+.++.-.++..-..|...| .|++-+.+-+-. .+-.-+..-..-++.+|+..++...||+-++-
T Consensus 125 ~~i~~TRKt~Pg~R~~~k~Av~~G-------Gg~~HR~~L~d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~t 197 (277)
T PRK08072 125 IRICDTRKTTPGLRMFDKYAVVCG-------GGFNHRFGLYDGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETET 197 (277)
T ss_pred eEEEecCCCCcchhHHHHHHHHhc-------CCcccCCCCCceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 457777788778887777777666 566655432100 00001111234456678777766779998742
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCc--EEeee
Q 008423 127 EGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCP--IVPGI 193 (566)
Q Consensus 127 EgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vP--IIpGI 193 (566)
++.+++=.++|||+|.-.- +.++.+.+.++.++ ..+| .+-||
T Consensus 198 ---------------------leea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~i~AiGGI 241 (277)
T PRK08072 198 ---------------------EEQVREAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIVTEASGGI 241 (277)
T ss_pred ---------------------HHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCceEEEECCC
Confidence 2223333579999997753 66777666665442 2355 34455
No 382
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=30.61 E-value=2.1e+02 Score=30.71 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=51.6
Q ss_pred hhhccCCCcCEEEecCCC----------CCC-CchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCE
Q 008423 10 WTAWWPTTRHSATSRWGA----------GGS-TADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQN 78 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwga----------gG~-~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrN 78 (566)
..++.+...+.|.|+-.. |+. +-+..++....+++ .|+++....+....|..+|.+.+.-+.++|++.
T Consensus 107 ~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~-~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~ 185 (378)
T PRK05301 107 LAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA-HGYPLTLNAVIHRHNIDQIPRIIELAVELGADR 185 (378)
T ss_pred HHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH-CCCceEEEEEeecCCHHHHHHHHHHHHHcCCCE
Confidence 344555555666555432 111 34556777777775 799998888888889999999999999999998
Q ss_pred EEEe
Q 008423 79 VLAL 82 (566)
Q Consensus 79 ILaL 82 (566)
+-+.
T Consensus 186 i~~~ 189 (378)
T PRK05301 186 LELA 189 (378)
T ss_pred EEEe
Confidence 8654
No 383
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=30.59 E-value=5.7e+02 Score=25.71 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
..+...|.+.|..+.+.|++.+-.=-=| |. + ...+....+.|+.||+..++ +.+-+=-.|+ ++
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~H~DimD----g~-f---vpn~~~G~~~v~~lr~~~~~-~~lDvHLm~~------~p-- 77 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWLHVDVMD----GH-F---VPNLSFGPPVVKSLRKHLPN-TFLDCHLMVS------NP-- 77 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEeccc----Cc-c---CCCcCcCHHHHHHHHhcCCC-CCEEEEECCC------CH--
Confidence 3466889999999999999888742222 11 1 12345578899999975433 2332322222 22
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHH
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 205 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~ 205 (566)
..+++.=.++|||.+.-..--..+.+.+.++.+++.|.. +-..+.|-++...+..+
T Consensus 78 ----------~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~--~gval~p~t~~e~l~~~ 133 (228)
T PTZ00170 78 ----------EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMK--VGVAIKPKTPVEVLFPL 133 (228)
T ss_pred ----------HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCe--EEEEECCCCCHHHHHHH
Confidence 233344446899988776665555578899999999943 23344455665555443
No 384
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=30.55 E-value=7.8e+02 Score=27.27 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=90.3
Q ss_pred hhccCCCcCEEE----ecCCCCCCCc---hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec
Q 008423 11 TAWWPTTRHSAT----SRWGAGGSTA---DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 11 ~~~~~~~p~fVs----VTwgagG~~~---~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
.+++.+..|||- +++.+-.... ..-++.+..++++.|-.++.-.+.++- ..++.+..+.+.++|..-+|+=
T Consensus 147 y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~- 224 (391)
T cd08209 147 REQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGP-VFTLKEKARRLVEAGANALLFN- 224 (391)
T ss_pred HHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEe-
Confidence 456666777762 2222222212 235566677777889877655555544 5788888889999999766631
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
.+.+..+.++.+++. . ++.+-+-++|.+|.-- .+++ ..-+...-+.+|-+= ||||.+
T Consensus 225 ---------------~~~~G~~~l~~l~~~-~-~~~lpIhaHra~~ga~~~~~~---~Gis~~~~l~kl~RL--aGaD~~ 282 (391)
T cd08209 225 ---------------VFAYGLDVLEALASD-P-EINVPIFAHPAFAGALYGSPD---YGIAASVLLGTLMRL--AGADAV 282 (391)
T ss_pred ---------------ccccchHHHHHHHhc-C-cCCcEEEecCCcccccccCCC---CCCcHHHHHHHHHHH--cCCCcc
Confidence 122234446677754 2 3566688899988431 1111 001111234444443 799988
Q ss_pred Eec-----cCCCHHHHHHHHHHHHHcC
Q 008423 163 ITQ-----LFYDTDMFLKFVNDCRQIG 184 (566)
Q Consensus 163 ITQ-----lffD~d~f~~f~~~~R~~G 184 (566)
++= +-++.+...++.+.||.-+
T Consensus 283 ~~~~~~Gk~~~~~~~~~~~~~~~~~~~ 309 (391)
T cd08209 283 LFPSPYGSVALSKEEALAIAEALRRGG 309 (391)
T ss_pred ccCCccCCcCCCHHHHHHHHHHHhCcC
Confidence 765 5568888999999999753
No 385
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.50 E-value=5.8e+02 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCCEEEE
Q 008423 62 EKIDHALQTIKSNGIQNVLA 81 (566)
Q Consensus 62 ~~L~~~L~~a~~~GIrNILa 81 (566)
..+.+.|..|+++|++.|=+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl 29 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAM 29 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEE
Confidence 77889999999999988843
No 386
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=30.49 E-value=6.1e+02 Score=27.99 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 92 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~ 92 (566)
..+++..++.|++|.++|++.++ |+-|.|..+.+
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alv-lTVD~pv~G~R 164 (381)
T PRK11197 131 LRDRGFMRNALERAKAAGCSTLV-FTVDMPVPGAR 164 (381)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-EecCCCCCCCC
Confidence 44888899999999999998766 89998866543
No 387
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=30.39 E-value=5.2e+02 Score=28.03 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEE-EEecC---CCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGIT-VAGYP---EGHPDTIGP 135 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IG-VAgyP---EgHpe~~~~ 135 (566)
+...+.+.++.+.++||+.|++..= |....+....+-..=..-..-|+.||+.+++-.-|. |+.=| -||--.-+.
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv-~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~ 135 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGV-PELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED 135 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCc-CCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC
Confidence 6788999999999999999997643 332111100010000113445666777776422222 22112 344111000
Q ss_pred CCCCCccchHHHHHHHHH----HHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC-CCc
Q 008423 136 DGVASNESYQSDLLYLKK----KVDAGADLIITQLFYDTDMFLKFVNDCRQIGI-TCP 188 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~----KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi-~vP 188 (566)
|+. +-+.-++.|.+ =.+||||++--==--|-.. ....+.+.++|. ++|
T Consensus 136 -g~i---dND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV-~aIR~aLd~~g~~~v~ 188 (323)
T PRK09283 136 -GYV---DNDETLELLAKQALSQAEAGADIVAPSDMMDGRV-GAIREALDEAGFTDVP 188 (323)
T ss_pred -CcC---cCHHHHHHHHHHHHHHHHhCCCEEEcccccccHH-HHHHHHHHHCCCCCCc
Confidence 000 01133444433 3479999986554444433 455667777886 344
No 388
>PRK04302 triosephosphate isomerase; Provisional
Probab=30.37 E-value=5.5e+02 Score=25.48 Aligned_cols=117 Identities=10% Similarity=0.091 Sum_probs=71.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHH
Q 008423 68 LQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSD 147 (566)
Q Consensus 68 L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~d 147 (566)
+..++++|++.++ -||.-+ ...|....++++..++ +|-. .| .+-++ . ++
T Consensus 78 ~~~l~~~G~~~vi--i~~ser--------~~~~~e~~~~v~~a~~-~Gl~-~I--~~v~~-------~----------~~ 126 (223)
T PRK04302 78 PEAVKDAGAVGTL--INHSER--------RLTLADIEAVVERAKK-LGLE-SV--VCVNN-------P----------ET 126 (223)
T ss_pred HHHHHHcCCCEEE--Eecccc--------ccCHHHHHHHHHHHHH-CCCe-EE--EEcCC-------H----------HH
Confidence 6677889999887 344322 1234456677777765 5521 22 23232 0 33
Q ss_pred HHHHHHHHHcCCcEEE-----------eccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc--cCCCCCC
Q 008423 148 LLYLKKKVDAGADLII-----------TQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG--FCKTKIP 214 (566)
Q Consensus 148 l~~Lk~KvdAGAdFiI-----------TQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~--l~Gv~VP 214 (566)
++.+ .+.|++||- +.-..+++.+.+..+.+|+...++||+.| -.|.+.....++.+ .-|+-|-
T Consensus 127 ~~~~---~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~G-ggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 127 SAAA---AALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCG-AGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHH---hcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEE-CCCCCHHHHHHHHcCCCCEEEEe
Confidence 4433 346888873 22236788888888999986556899988 45777777766543 4566677
Q ss_pred HHHHH
Q 008423 215 AEITA 219 (566)
Q Consensus 215 ~~il~ 219 (566)
..+++
T Consensus 203 sa~l~ 207 (223)
T PRK04302 203 SGVVK 207 (223)
T ss_pred hHHhC
Confidence 66653
No 389
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=30.08 E-value=5.3e+02 Score=25.21 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCceeEEeccccCCH------HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeE
Q 008423 47 CVETMMHLTCTNMPV------EKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGI 120 (566)
Q Consensus 47 Gle~i~HLTCrd~n~------~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~I 120 (566)
++.+|.-+-.+.-+. ....+..+.+.+.|.+-|-+++=| ..|....+.++.||+... ..|
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~------------~~~~g~~~~~~~i~~~v~--iPi 75 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEP------------KYFQGSLEDLRAVREAVS--LPV 75 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCc------------cccCCCHHHHHHHHHhcC--CCE
Confidence 356666666543332 234555666778888888665422 223334566777776542 222
Q ss_pred EEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-eccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCH
Q 008423 121 TVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-TQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNY 199 (566)
Q Consensus 121 GVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~ 199 (566)
-+-+ -. .+...+++=.++|||.++ -+...+.+.+.++++.+...|+++ ++.+ .+.
T Consensus 76 ~~~~------~i-------------~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~--~v~v---~~~ 131 (217)
T cd00331 76 LRKD------FI-------------IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEV--LVEV---HDE 131 (217)
T ss_pred EECC------ee-------------cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeE--EEEE---CCH
Confidence 2211 00 112245666689999874 466677788899999998888653 4444 466
Q ss_pred HHHHHHhc
Q 008423 200 KGFLRMTG 207 (566)
Q Consensus 200 ~~~~r~~~ 207 (566)
..+.+..+
T Consensus 132 ~e~~~~~~ 139 (217)
T cd00331 132 EELERALA 139 (217)
T ss_pred HHHHHHHH
Confidence 55555444
No 390
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=30.01 E-value=2e+02 Score=29.31 Aligned_cols=102 Identities=24% Similarity=0.359 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCcee--EEEEecCCCCCC-CCCCCCCCCccchHHHHHHHHHHHHcCCcEEEe-ccCCCHHHHHHHHH
Q 008423 103 ALDLVKHIRSAYGDYFG--ITVAGYPEGHPD-TIGPDGVASNESYQSDLLYLKKKVDAGADLIIT-QLFYDTDMFLKFVN 178 (566)
Q Consensus 103 A~dLVk~Ir~~~gd~F~--IGVAgyPEgHpe-~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT-QlffD~d~f~~f~~ 178 (566)
...+++.|++... || +.+.-+|+.-|+ ..++ -++|.+ =-.||.+|| ++ .+|......+
T Consensus 9 GeR~~~~i~~~~~--~~~~v~~~~~p~~l~efId~p------------ee~Lp~--i~~~Dl~I~y~l--HPDl~~~l~~ 70 (217)
T PF02593_consen 9 GERVIENIKNYFD--FCRSVIVYEIPEDLPEFIDDP------------EEYLPK--IPEADLLIAYGL--HPDLTYELPE 70 (217)
T ss_pred hHHHHHHHHhcCC--CCceEEEEeCCccccccccCh------------HHHccC--CCCCCEEEEecc--CchhHHHHHH
Confidence 4556677775443 78 999999997666 4433 234444 368999998 43 5777788899
Q ss_pred HHHHcCCCCcEEeeeccc-CCHHHHHHHhccCC--CCCCHHHHHHhCC
Q 008423 179 DCRQIGITCPIVPGIMPI-NNYKGFLRMTGFCK--TKIPAEITAALEP 223 (566)
Q Consensus 179 ~~R~~Gi~vPIIpGImPI-~s~~~~~r~~~l~G--v~VP~~il~~Le~ 223 (566)
.+++.|+..=|+|+=.|= ...+++++..+-.| +..|. ..=.|++
T Consensus 71 ~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~-~~CsL~~ 117 (217)
T PF02593_consen 71 IAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPK-PFCSLEE 117 (217)
T ss_pred HHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCc-cccccCC
Confidence 999999776566655554 44557777666665 55665 4445554
No 391
>PLN02735 carbamoyl-phosphate synthase
Probab=29.97 E-value=3.7e+02 Score=33.72 Aligned_cols=131 Identities=18% Similarity=0.100 Sum_probs=75.6
Q ss_pred cCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCCC---CCCCCCCCCccchHHHHH
Q 008423 74 NGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHPD---TIGPDGVASNESYQSDLL 149 (566)
Q Consensus 74 ~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe---~~~~~~~~~~~~~~~dl~ 149 (566)
...+.||+|++-+.+.+. ...|+| ++.+++.+|+ .| +-.|.|-.+||...- ..|. -|.-+..+ +++.
T Consensus 572 ~~~kkvlilG~G~~~igq-----~iefd~~~v~~~~alr~-~G-~~tI~v~~npetvstd~~~aD~-~y~~pl~~-e~vl 642 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQ-----GIEFDYCCCHASFALQD-AG-YETIMMNSNPETVSTDYDTSDR-LYFEPLTV-EDVL 642 (1102)
T ss_pred CCCceEEEeCccccccCc-----ccccceeHHHHHHHHHH-cC-CeEEEEeCCCccccCCcccCCe-EEEEeCCH-HHHH
Confidence 467899999888876542 357998 7999999986 56 468888899987321 0110 00001122 2444
Q ss_pred HHHHHHHcCCcEEEeccCCCHHHH-HH-HHHHHHHcCC-------CCcEEeeec-----ccCCHHHHHHHhccCCCCCCH
Q 008423 150 YLKKKVDAGADLIITQLFYDTDMF-LK-FVNDCRQIGI-------TCPIVPGIM-----PINNYKGFLRMTGFCKTKIPA 215 (566)
Q Consensus 150 ~Lk~KvdAGAdFiITQlffD~d~f-~~-f~~~~R~~Gi-------~vPIIpGIm-----PI~s~~~~~r~~~l~Gv~VP~ 215 (566)
.+.+| .++|.||+|+.=+.... .. ..+.+.+.+. .++| +|-- -..+...++++.+-+|+.+|+
T Consensus 643 ~i~~~--e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i-~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~ 719 (1102)
T PLN02735 643 NVIDL--ERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKI-WGTSPDSIDAAEDRERFNAILNELKIEQPK 719 (1102)
T ss_pred HHHHH--hCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEE-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Confidence 45555 48899999987665421 11 1122222221 1222 3321 123444666677788999998
Q ss_pred H
Q 008423 216 E 216 (566)
Q Consensus 216 ~ 216 (566)
.
T Consensus 720 ~ 720 (1102)
T PLN02735 720 G 720 (1102)
T ss_pred e
Confidence 6
No 392
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=29.77 E-value=2.3e+02 Score=30.64 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=58.0
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccc------cCCHHHHHHHHHHHHHcCCC----------EEEEe
Q 008423 19 HSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCT------NMPVEKIDHALQTIKSNGIQ----------NVLAL 82 (566)
Q Consensus 19 ~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCr------d~n~~~L~~~L~~a~~~GIr----------NILaL 82 (566)
.+..|.=..-+......+...+.+-+.+|.. ..|+|.| +.+.+.+...+..+.+.|+. ||.+-
T Consensus 29 ~~~mvRv~ip~~lt~eqLr~LAdiaekyg~g-~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~~G~~vrrni~aC 107 (341)
T TIGR02066 29 VIYTVKAGTPRLLSVDTLRKLCDIADKYSDG-YLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGGTGDAVKGNIVHT 107 (341)
T ss_pred cEEEEEeCCCcccCHHHHHHHHHHHHHhCCC-eEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCCCCCccccccccC
Confidence 3555554432254444454444444457754 7899976 34688888998888887743 44433
Q ss_pred cCCCCCCCCCccccCCCcccHHHHHHHHHHH-----cCCceeEEEEecCCCC
Q 008423 83 RGDPPHGQDKFVQIQGGFACALDLVKHIRSA-----YGDYFGITVAGYPEGH 129 (566)
Q Consensus 83 rGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~-----~gd~F~IGVAgyPEgH 129 (566)
.|-..-. .........+..|.+.|.+. .+..|.|+++|-|...
T Consensus 108 ~G~~~C~----~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~~~C 155 (341)
T TIGR02066 108 QGWLHCH----IPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMC 155 (341)
T ss_pred cCCCCCC----cchhchHHHHHHHHHHHHHHHhcccccccceeccccccccc
Confidence 3321100 00011122244444444443 3456899999999874
No 393
>PLN00200 argininosuccinate synthase; Provisional
Probab=29.63 E-value=7e+02 Score=27.76 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCcee-EEeccccCCHHHHHHHHHHHHHcCCCEEEEe
Q 008423 35 TLDIANRMQNTICVETM-MHLTCTNMPVEKIDHALQTIKSNGIQNVLAL 82 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i-~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL 82 (566)
|.-++..+++.+|.+++ .|+.. +...++++.+-..|.++||....++
T Consensus 18 Ssvla~~L~e~~G~eViav~id~-Gq~~~el~~a~~~A~~lGi~~~~v~ 65 (404)
T PLN00200 18 TSVILKWLRENYGCEVVCFTADV-GQGIEELEGLEAKAKASGAKQLVVK 65 (404)
T ss_pred HHHHHHHHHHhhCCeEEEEEEEC-CCChHHHHHHHHHHHHcCCCEEEEE
Confidence 44455666655687764 34443 3345788888888999999875555
No 394
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=29.58 E-value=3.8e+02 Score=29.23 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=91.0
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCC
Q 008423 19 HSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQG 98 (566)
Q Consensus 19 ~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~ 98 (566)
.-++||-|------.++++++..+++++|-+.=.||=.+...... +.|..+.++|.+-|=.= |+.. ...
T Consensus 80 ~GasiTGGdPl~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~--e~l~~L~eAGLDEIRfH---p~~~------~~~ 148 (353)
T COG2108 80 LGASITGGDPLLEIERTVEYIRLLKDEFGEDFHIHLYTTGILATE--EALKALAEAGLDEIRFH---PPRP------GSK 148 (353)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHHhhccceeEEEeeccccCCH--HHHHHHHhCCCCeEEec---CCCc------ccc
Confidence 455666432222236799999999999999999999886554332 45667788999887543 2211 112
Q ss_pred CcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHc-CCcEE-EeccCCCHHHHHHH
Q 008423 99 GFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDA-GADLI-ITQLFYDTDMFLKF 176 (566)
Q Consensus 99 ~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdA-GAdFi-ITQlffD~d~f~~f 176 (566)
......+.|+..+ ++|-+..+=+-+-|+ . +..+..+++=++. |+||+ |-++=|+-.++.++
T Consensus 149 ~~e~~i~~l~~A~-~~g~dvG~EiPaipg-------~---------e~~i~e~~~~~~~~~~~FlNiNELE~sE~N~~~l 211 (353)
T COG2108 149 SSEKYIENLKIAK-KYGMDVGVEIPAIPG-------E---------EEAILEFAKALDENGLDFLNINELEFSENNYENL 211 (353)
T ss_pred ccHHHHHHHHHHH-HhCccceeecCCCcc-------h---------HHHHHHHHHHHHhcccceeeeeeeeeccchHHHH
Confidence 2223444444333 566433333334332 1 1445555555554 55996 89999988887664
Q ss_pred HHHHHHcCCCCcEEeeecccCCHHHHHHHhccC
Q 008423 177 VNDCRQIGITCPIVPGIMPINNYKGFLRMTGFC 209 (566)
Q Consensus 177 ~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~ 209 (566)
+++|..+-=---..+..|.....+..+++
T Consensus 212 ----~~~gy~~~~~~~~av~GS~E~~Lk~l~~~ 240 (353)
T COG2108 212 ----LERGYKISDDGSSAVAGSLEAALKVLKWA 240 (353)
T ss_pred ----HhcCceeccCCcccccchHHHHHHHHHHH
Confidence 44554311001123566776666555443
No 395
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.57 E-value=6.2e+02 Score=25.83 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=57.9
Q ss_pred cCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEec
Q 008423 46 ICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGY 125 (566)
Q Consensus 46 ~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgy 125 (566)
.+.+++..+.+. +.+++.+..+.+.+.|++-|=+=-|-|...... ..........++|+.+|+..+-.+.+.+..+
T Consensus 97 ~~~pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~--~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 172 (289)
T cd02810 97 PGQPLIASVGGS--SKEDYVELARKIERAGAKALELNLSCPNVGGGR--QLGQDPEAVANLLKAVKAAVDIPLLVKLSPY 172 (289)
T ss_pred CCCeEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--ccccCHHHHHHHHHHHHHccCCCEEEEeCCC
Confidence 467888888775 667888888888888998766555555432110 0011234467888889876532234444432
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHH-HHcCCcEEEe
Q 008423 126 PEGHPDTIGPDGVASNESYQSDLLYLKKK-VDAGADLIIT 164 (566)
Q Consensus 126 PEgHpe~~~~~~~~~~~~~~~dl~~Lk~K-vdAGAdFiIT 164 (566)
. +. ++...+.++ .++|||+|++
T Consensus 173 ~-------~~----------~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 173 F-------DL----------EDIVELAKAAERAGADGLTA 195 (289)
T ss_pred C-------CH----------HHHHHHHHHHHHcCCCEEEE
Confidence 1 11 234444444 3589999885
No 396
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.42 E-value=6.3e+02 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEee
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
..+.++++ +++|+|+.=. ....+..+++.+++.|...||+.+
T Consensus 182 ~~v~~i~~---~~~d~v~~~~--~~~~~~~~~~~~~~~~~~~~i~~~ 223 (332)
T cd06344 182 TAVSQAIN---NGATVLVLFP--DTDTLDKALEVAKANKGRLTLLGG 223 (332)
T ss_pred HHHHHHHh---cCCCEEEEeC--ChhHHHHHHHHHHhcCCCceEEec
Confidence 34555554 5899988544 344677889999998887887643
No 397
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=29.35 E-value=4.1e+02 Score=26.73 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=64.2
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
.+.+...+.|+|-.-+ .. ....++.+.+++ .|+.+-.-+.. ..+.+.+...+. ...++-||++.-+|...+
T Consensus 83 ~~~~~Gad~itvH~ea--~~-~~~~~~l~~ik~-~G~~~gval~p-~t~~e~l~~~l~---~~~vD~Vl~m~v~pG~~g- 153 (228)
T PTZ00170 83 DFAKAGASQFTFHIEA--TE-DDPKAVARKIRE-AGMKVGVAIKP-KTPVEVLFPLID---TDLVDMVLVMTVEPGFGG- 153 (228)
T ss_pred HHHHcCCCEEEEeccC--Cc-hHHHHHHHHHHH-CCCeEEEEECC-CCCHHHHHHHHc---cchhhhHHhhhcccCCCC-
Confidence 3444556666554322 11 112344444453 56555433332 235555554431 122444555555544332
Q ss_pred CccccCCCcc-cHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE-eccCCC
Q 008423 92 KFVQIQGGFA-CALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII-TQLFYD 169 (566)
Q Consensus 92 ~~~~~~~~F~-~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlffD 169 (566)
..|. ...+-++.+|+..+. +.|.|+| |- ..+.+++=+++|||.+| -=.+|.
T Consensus 154 ------q~~~~~~~~ki~~~~~~~~~-~~I~VdG---GI-----------------~~~ti~~~~~aGad~iVvGsaI~~ 206 (228)
T PTZ00170 154 ------QSFMHDMMPKVRELRKRYPH-LNIQVDG---GI-----------------NLETIDIAADAGANVIVAGSSIFK 206 (228)
T ss_pred ------cEecHHHHHHHHHHHHhccc-CeEEECC---CC-----------------CHHHHHHHHHcCCCEEEEchHHhC
Confidence 2343 366777778776653 5677775 11 12345555678999653 233443
Q ss_pred HHHHHHHHHHHH
Q 008423 170 TDMFLKFVNDCR 181 (566)
Q Consensus 170 ~d~f~~f~~~~R 181 (566)
.+...+-++.++
T Consensus 207 a~d~~~~~~~i~ 218 (228)
T PTZ00170 207 AKDRKQAIELLR 218 (228)
T ss_pred CCCHHHHHHHHH
Confidence 333333333333
No 398
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=29.24 E-value=87 Score=35.30 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 20 SATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 20 fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
-+++--+|||+ |+.+|+.+++ .| ++.|.+.++..+......+..+|+.||.++..|+..
T Consensus 117 VLD~CAAPGgK----Tt~la~~l~~-~g-----~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~ 175 (470)
T PRK11933 117 VLDMAAAPGSK----TTQIAALMNN-QG-----AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRV 175 (470)
T ss_pred EEEeCCCccHH----HHHHHHHcCC-CC-----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhh
Confidence 44555555554 6777777764 34 788999999999888888899999999999888753
No 399
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.05 E-value=8.2e+02 Score=27.13 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CCCccc--cCC-CcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHG-QDKFVQ--IQG-GFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTI 133 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~-~~~~~~--~~~-~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~ 133 (566)
.++.+.+.+.+..+.+.|++.|..+ |+.... +..... +.. .-..-.+|++.|++..+. ..|-.+ ..||+.-
T Consensus 176 sr~~e~V~~Ei~~l~~~g~kei~l~-~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~-~rir~~---~~~p~~~ 250 (448)
T PRK14333 176 SRTPEAIRAEIEELAAQGYKEITLL-GQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGI-ERIRFA---TSHPRYF 250 (448)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEE-ecccchhcCCCCCccccccccccHHHHHHHHHhcCCC-eEEEEC---CCChhhh
Confidence 4466888888888888899999744 443211 100000 000 011356677777654332 334332 2343311
Q ss_pred CCCCCCCccchHHHHHHHHHHHHcCCcEE-----------Eec--cCCCHHHHHHHHHHHHHc--CC--CCcEEeeeccc
Q 008423 134 GPDGVASNESYQSDLLYLKKKVDAGADLI-----------ITQ--LFYDTDMFLKFVNDCRQI--GI--TCPIVPGIMPI 196 (566)
Q Consensus 134 ~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi-----------ITQ--lffD~d~f~~f~~~~R~~--Gi--~vPIIpGImPI 196 (566)
+ .++-.+.++...|+.++ .-+ =-|+.+.+.+.++.+|++ |+ ..-+|.|+ |=
T Consensus 251 ~-----------~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGf-Pg 318 (448)
T PRK14333 251 T-----------ERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGF-PG 318 (448)
T ss_pred h-----------HHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEEC-CC
Confidence 1 22322222322233322 111 137888999999999998 43 23457776 45
Q ss_pred CCHHHHHH
Q 008423 197 NNYKGFLR 204 (566)
Q Consensus 197 ~s~~~~~r 204 (566)
.|.+.|..
T Consensus 319 ET~edf~~ 326 (448)
T PRK14333 319 ETEAQFEN 326 (448)
T ss_pred CCHHHHHH
Confidence 56655543
No 400
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.97 E-value=89 Score=24.96 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCcEEeeecccC
Q 008423 168 YDTDMFLKFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 168 fD~d~f~~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
|+-+.+.++++.+|+.|+.+|+-+-+.|-.
T Consensus 9 ~~~~el~~~l~~~r~~~~~~~~kAvlT~tN 38 (58)
T PF12646_consen 9 FSGEELDKFLDALRKAGIPIPLKAVLTPTN 38 (58)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEECCCc
Confidence 577888999999999999999999888765
No 401
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.93 E-value=4.2e+02 Score=29.24 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--CCCccccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHG--QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIG 134 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~--~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~ 134 (566)
.++.+.+.+.+..+.+.|++.|. +.||.... +... .+.-....+|++.|.+.-+. ..|... .+|... +
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~ei~-l~d~~~~~y~~~~~---~~~~~~l~~Ll~~l~~~~~~-~~ir~~~~~p~~~----~ 245 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVREIT-LLGQNVNAYRGEGP---DGEIADFAELLRLVAAIDGI-ERIRYTTSHPRDF----T 245 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEE-EEeeccccccCCCC---CCCcchHHHHHHHHHhcCCc-cEEEEccCCcccC----C
Confidence 45678888888888889999986 45554321 1000 01112467788777653332 223332 244322 1
Q ss_pred CCCCCCccchHHHHHHHHHHHHcCCcE-----------EEecc--CCCHHHHHHHHHHHHHc--CCC--CcEEeeecccC
Q 008423 135 PDGVASNESYQSDLLYLKKKVDAGADL-----------IITQL--FYDTDMFLKFVNDCRQI--GIT--CPIVPGIMPIN 197 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~KvdAGAdF-----------iITQl--ffD~d~f~~f~~~~R~~--Gi~--vPIIpGImPI~ 197 (566)
. +.++.|+ +...|+.+ +.-.+ -|+.+.+.+.++.+|++ |+. .-+|.|+ |=.
T Consensus 246 ~----------ell~~l~-~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~-PgE 313 (444)
T PRK14325 246 D----------DLIEAYA-DLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGF-PGE 313 (444)
T ss_pred H----------HHHHHHH-cCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEEC-CCC
Confidence 1 2334343 22112222 22122 37889999999999987 432 3456676 555
Q ss_pred CHHHHHH
Q 008423 198 NYKGFLR 204 (566)
Q Consensus 198 s~~~~~r 204 (566)
|...+..
T Consensus 314 T~ed~~~ 320 (444)
T PRK14325 314 TDEDFEA 320 (444)
T ss_pred CHHHHHH
Confidence 6665543
No 402
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=28.89 E-value=9e+02 Score=27.43 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCccccccc-----hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC---CHHHHHHHHHHHH
Q 008423 1 MAWRTCSSG-----WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM---PVEKIDHALQTIK 72 (566)
Q Consensus 1 ~~~~~~~~~-----~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~---n~~~L~~~L~~a~ 72 (566)
..||..++. .++......+.|.|-....- ...+..+..+.+..|+.+..-++++.- +.+.+.+..+.+.
T Consensus 87 ~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~ 163 (467)
T PRK14041 87 VGYRHYADDVVELFVKKVAEYGLDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELV 163 (467)
T ss_pred cCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Q ss_pred HcCCCEEEEecCCCCCCCCCccccCCCcc--cHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHH
Q 008423 73 SNGIQNVLALRGDPPHGQDKFVQIQGGFA--CALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLY 150 (566)
Q Consensus 73 ~~GIrNILaLrGDpp~~~~~~~~~~~~F~--~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~ 150 (566)
++|++.|- -.+ ..|... .+.+||+.+|+.++ .-|++-++=..- .-+..
T Consensus 164 ~~Gad~I~------i~D------t~G~l~P~~v~~Lv~~lk~~~~--vpI~~H~Hnt~G----------------lA~AN 213 (467)
T PRK14041 164 DMGVDSIC------IKD------MAGLLTPKRAYELVKALKKKFG--VPVEVHSHCTTG----------------LASLA 213 (467)
T ss_pred HcCCCEEE------ECC------ccCCcCHHHHHHHHHHHHHhcC--CceEEEecCCCC----------------cHHHH
Q ss_pred HHHHHHcCCcEE
Q 008423 151 LKKKVDAGADLI 162 (566)
Q Consensus 151 Lk~KvdAGAdFi 162 (566)
..+=++||||.|
T Consensus 214 ~laAieaGad~v 225 (467)
T PRK14041 214 YLAAVEAGADMF 225 (467)
T ss_pred HHHHHHhCCCEE
No 403
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.67 E-value=8.1e+02 Score=28.04 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=72.2
Q ss_pred HHHHHHHhhcCCce-eEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 37 DIANRMQNTICVET-MMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 37 ~la~~lq~~~Gle~-i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
+++..+.+ .|..+ ++|... +.+-+.+.+.+..|.++||.+|++ ||--+. ..-.+-.+++-++.+|+.++
T Consensus 242 ~~~~l~a~-~g~~vVlm~~~~-~~~~~~l~~~ie~a~~~Gi~~IIl---DPglg~-----~~~~l~~sL~~l~~~r~~~~ 311 (499)
T TIGR00284 242 ELASEKKL-PEDAFVVVPGNQ-PTNYEELAKAVKKLRTSGYSKVAA---DPSLSP-----PLLGLLESIIRFRRASRLLN 311 (499)
T ss_pred HHHHHHHH-cCCeEEEEcCCC-CchHHHHHHHHHHHHHCCCCcEEE---eCCCCc-----chHHHHHHHHHHHHHHHhcC
Confidence 34444443 45444 567532 222378889999999999987663 554321 11123334444555666777
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc--------CCCHHHHHHHHHHHHHcC
Q 008423 116 DYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL--------FYDTDMFLKFVNDCRQIG 184 (566)
Q Consensus 116 d~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl--------ffD~d~f~~f~~~~R~~G 184 (566)
....+|+..--|- .+.++.. .-..-...=+..||+.+-|-= +.......+.+..++..+
T Consensus 312 ~Pil~GvSNvtel-~daDs~g---------~naal~~~a~e~Ga~ilrvhd~S~k~r~sV~E~~~A~~m~~~~~~~~ 378 (499)
T TIGR00284 312 VPLVFGAANVTEL-VDADSHG---------VNALLAAIALEAGASILYVVEDSYKSYRSTAEAAEAAKMASAARKLN 378 (499)
T ss_pred CcEEEeeccccCC-CccchhH---------HHHHHHHHHHHcCCCEEEEcCCcccccccHHHHHHHHHHHHHHHhcC
Confidence 6667787644332 1221211 112222344567999876665 666667777777777655
No 404
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=28.63 E-value=7e+02 Score=26.12 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=112.6
Q ss_pred HHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc
Q 008423 38 IANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY 117 (566)
Q Consensus 38 la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~ 117 (566)
+...+++ +--.++-++|. |-+.++..++.|.+.+.-=||.+.-.. .. ..+++.....+++.+.+++.
T Consensus 7 ~l~~A~~--~~yav~Afn~~--n~e~~~avi~aAe~~~~PvIl~~~~~~---~~----~~~~~~~~~~~~~~~a~~~~-- 73 (282)
T TIGR01859 7 ILQKAKK--EGYAVGAFNFN--NLEWTQAILEAAEEENSPVIIQVSEGA---IK----YMGGYKMAVAMVKTLIERMS-- 73 (282)
T ss_pred HHHHHHH--CCceEEEEEEC--CHHHHHHHHHHHHHhCCCEEEEcCcch---hh----ccCcHHHHHHHHHHHHHHCC--
Confidence 3444443 33467788887 667789999999999988788652111 01 12335455566666655553
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE---eccCCC--HHHHHHHHHHHHHcCCCCcEEee
Q 008423 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII---TQLFYD--TDMFLKFVNDCRQIGITCPIVPG 192 (566)
Q Consensus 118 F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI---TQlffD--~d~f~~f~~~~R~~Gi~vPIIpG 192 (566)
+ +-|+-+= -|. .+++.+++-+++|.+.++ +++=|+ .+...+.++.|+..|+.+-.-.|
T Consensus 74 ~-vpv~lhl-DH~---------------~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG 136 (282)
T TIGR01859 74 I-VPVALHL-DHG---------------SSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELG 136 (282)
T ss_pred C-CeEEEEC-CCC---------------CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 1 3444432 231 135677788899988776 454443 34456677777887865433334
Q ss_pred ec------------ccCCHHHHHHHhccCCCC------------------CCHHHHHHhCCCCCCHHHHHHHHH------
Q 008423 193 IM------------PINNYKGFLRMTGFCKTK------------------IPAEITAALEPIKDNEEAVKAYGI------ 236 (566)
Q Consensus 193 Im------------PI~s~~~~~r~~~l~Gv~------------------VP~~il~~Le~~kddde~vk~~Gv------ 236 (566)
.+ ..++...+.++.+..|+. +.-+.++.+. +..++
T Consensus 137 ~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~---------~~~~iPlv~hG 207 (282)
T TIGR01859 137 TLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIK---------ELTNIPLVLHG 207 (282)
T ss_pred CCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHH---------HHhCCCEEEEC
Confidence 42 245666666665422211 1112222221 01111
Q ss_pred --HHHHHHHHHHHHcCCCeEEEEcCCchHHHHHHHHHc
Q 008423 237 --HLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNL 272 (566)
Q Consensus 237 --~la~e~i~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l 272 (566)
-+-.+.++++.+.|+.++.++|--+......+-+.+
T Consensus 208 gSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 208 ASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVL 245 (282)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHH
Confidence 122467788888999999999988777666666655
No 405
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=28.57 E-value=5.4e+02 Score=24.81 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=72.7
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEecc-ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTC-TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQ 90 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTC-rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~ 90 (566)
.+.......|-||+... ...+....+++.++ + +. +.+ +-.++++++ .+.++|.+-|. +.|.
T Consensus 24 ~l~~~G~~~vev~~~~~-----~~~~~i~~l~~~~~-~-~~-iGag~v~~~~~~~----~a~~~Ga~~i~-~p~~----- 85 (190)
T cd00452 24 ALIEGGIRAIEITLRTP-----GALEAIRALRKEFP-E-AL-IGAGTVLTPEQAD----AAIAAGAQFIV-SPGL----- 85 (190)
T ss_pred HHHHCCCCEEEEeCCCh-----hHHHHHHHHHHHCC-C-CE-EEEEeCCCHHHHH----HHHHcCCCEEE-cCCC-----
Confidence 45556667777777422 25556666666544 1 11 112 222444443 44457776664 1100
Q ss_pred CCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccC-CC
Q 008423 91 DKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLF-YD 169 (566)
Q Consensus 91 ~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf-fD 169 (566)
..++++..++ ++..+.+|+. . ...+++-+++|||++-. | .+
T Consensus 86 ------------~~~~~~~~~~-~~~~~i~gv~-t----------------------~~e~~~A~~~Gad~i~~--~p~~ 127 (190)
T cd00452 86 ------------DPEVVKAANR-AGIPLLPGVA-T----------------------PTEIMQALELGADIVKL--FPAE 127 (190)
T ss_pred ------------CHHHHHHHHH-cCCcEECCcC-C----------------------HHHHHHHHHCCCCEEEE--cCCc
Confidence 1356666554 5544555544 1 12234446799999974 2 23
Q ss_pred HHHHHHHHHHHHHcCCCCcEEe--eecccCCHHHHHHHhccCCCCCCHHHH
Q 008423 170 TDMFLKFVNDCRQIGITCPIVP--GIMPINNYKGFLRMTGFCKTKIPAEIT 218 (566)
Q Consensus 170 ~d~f~~f~~~~R~~Gi~vPIIp--GImPI~s~~~~~r~~~l~Gv~VP~~il 218 (566)
.. -.++++.+++.-.++|+++ || ...+...+.. +...++.+...+.
T Consensus 128 ~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~-~G~~~v~v~s~i~ 175 (190)
T cd00452 128 AV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLA-AGVVAVGGGSLLP 175 (190)
T ss_pred cc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHH-CCCEEEEEchhcc
Confidence 32 4567777765433467643 55 2233333332 1233444444443
No 406
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.56 E-value=8.6e+02 Score=27.12 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
|.++.+.+.+.+..+.+.|++.|..+.-|-.
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~ 211 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKGIRQVTLLGQNVN 211 (449)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 4557789999999998999999986654443
No 407
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=28.50 E-value=6.9e+02 Score=26.02 Aligned_cols=129 Identities=20% Similarity=0.156 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.+.+.+.++.+.+.|++ .+.+..|.|..+.. ...+.|+.+++..+..+.+.... +.
T Consensus 127 ~~~~~~~~i~~~~~~g~~-~i~l~~~~p~~~~~---------~~~~~i~~l~~~~~~pvivK~v~---------s~---- 183 (299)
T cd02809 127 DREITEDLLRRAEAAGYK-ALVLTVDTPVLGRR---------LTWDDLAWLRSQWKGPLILKGIL---------TP---- 183 (299)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEEecCCCCCCCC---------CCHHHHHHHHHhcCCCEEEeecC---------CH----
Confidence 456666677777888885 44566676653321 34577888888765333333211 11
Q ss_pred CccchHHHHHHHHHHHHcCCcEEEe------ccCCCHHHHHHHHHHHHH-cCCCCcEEeeecccCCHHHHHHHhc--cCC
Q 008423 140 SNESYQSDLLYLKKKVDAGADLIIT------QLFYDTDMFLKFVNDCRQ-IGITCPIVPGIMPINNYKGFLRMTG--FCK 210 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiIT------QlffD~d~f~~f~~~~R~-~Gi~vPIIpGImPI~s~~~~~r~~~--l~G 210 (566)
.+. ++=+++|||+|+. |+......+ ..+.++++ .+-++|||. -=.|.+...+.+... --+
T Consensus 184 ------~~a---~~a~~~G~d~I~v~~~gG~~~~~g~~~~-~~l~~i~~~~~~~ipvia-~GGI~~~~d~~kal~lGAd~ 252 (299)
T cd02809 184 ------EDA---LRAVDAGADGIVVSNHGGRQLDGAPATI-DALPEIVAAVGGRIEVLL-DGGIRRGTDVLKALALGADA 252 (299)
T ss_pred ------HHH---HHHHHCCCCEEEEcCCCCCCCCCCcCHH-HHHHHHHHHhcCCCeEEE-eCCCCCHHHHHHHHHcCCCE
Confidence 222 2334689999875 433333333 33444443 222477643 224566666655443 223
Q ss_pred CCCCHHHHHHhC
Q 008423 211 TKIPAEITAALE 222 (566)
Q Consensus 211 v~VP~~il~~Le 222 (566)
+-|-..++..+.
T Consensus 253 V~ig~~~l~~~~ 264 (299)
T cd02809 253 VLIGRPFLYGLA 264 (299)
T ss_pred EEEcHHHHHHHH
Confidence 456666766653
No 408
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=28.47 E-value=1.3e+02 Score=27.64 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
...+..+++.+. +.|.++..+..|.| +.+.|.+.|..+.+.+ ++++.+|--.
T Consensus 16 d~n~~~l~~~l~-~~G~~v~~~~~v~D-d~~~i~~~l~~~~~~~--D~VittGG~g 67 (144)
T PF00994_consen 16 DSNGPFLAALLE-ELGIEVIRYGIVPD-DPDAIKEALRRALDRA--DLVITTGGTG 67 (144)
T ss_dssp BHHHHHHHHHHH-HTTEEEEEEEEEES-SHHHHHHHHHHHHHTT--SEEEEESSSS
T ss_pred EhHHHHHHHHHH-HcCCeeeEEEEECC-CHHHHHHHHHhhhccC--CEEEEcCCcC
Confidence 345666666666 48999988888876 8999999998886666 5555666543
No 409
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.45 E-value=1.5e+02 Score=30.79 Aligned_cols=106 Identities=16% Similarity=0.020 Sum_probs=62.5
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc-------cHHHHHHHHHHHcCCceeEEEEe
Q 008423 52 MHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA-------CALDLVKHIRSAYGDYFGITVAG 124 (566)
Q Consensus 52 ~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~-------~A~dLVk~Ir~~~gd~F~IGVAg 124 (566)
..+-|+.++.=.++..-..|...| .|++-+.+-+ . .---|+ .-...++.+|+..+....||+-+
T Consensus 118 ~~i~~TRKt~Pg~r~~~k~Av~~G-------Gg~~hR~~L~-d-~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev 188 (269)
T cd01568 118 ARIADTRKTTPGLRLLEKYAVRAG-------GGDNHRLGLS-D-AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEV 188 (269)
T ss_pred EEEeecCCCChhhHHHHHHHHHhC-------CCccccCCCc-c-eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEec
Confidence 345566666666777777776666 5565444321 0 000111 11234677888777556788765
Q ss_pred cCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 125 YPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 125 yPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
+- ++.+++-+++|||+|.--.|+ ++.+.+.++.+++. .++||
T Consensus 189 ~t---------------------~eea~~A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~-~~i~i 230 (269)
T cd01568 189 ET---------------------LEEAEEALEAGADIIMLDNMS-PEELKEAVKLLKGL-PRVLL 230 (269)
T ss_pred CC---------------------HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhccC-CCeEE
Confidence 21 233445567999999988865 47777777777654 35665
No 410
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=28.43 E-value=3.1e+02 Score=26.72 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCC
Q 008423 63 KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGH 129 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgH 129 (566)
.....|..+.+.||+.+++++-++. ....+.+ +.+++. ....++..||...
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~~~--------------~~~~~~~-la~~~~-~i~~~~G~hP~~~ 66 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTDLK--------------SSKRALE-LAKKYD-NVYAAVGLHPHDA 66 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCHH--------------HHHHHHH-HHHhCC-CeEEEEeeCcchh
Confidence 3467778888999999998865420 1222223 334454 4566677888653
No 411
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=28.40 E-value=1.2e+02 Score=26.56 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCceeecCCCCCCCCCCCCCcccccCCCc-------ee-----eeeeeeeeecChhhHHHHHHhhc
Q 008423 393 TKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGG-------YV-----YQKAYLEFFCSPEKLTALVDKSK 459 (566)
Q Consensus 393 t~~i~~~L~~ln~~g~~ti~SQP~vng~~S~d~~~GwGp~~G-------yv-----yQKay~Eff~~~~~~~~l~~~~~ 459 (566)
...+.+.|.++--.| +|| ..+.|.|...| .- ..|..||.+|+.++++.+++.+.
T Consensus 10 ~~~v~~aL~~~G~~g-~Tv------------~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~i~ivv~d~~v~~iv~~I~ 75 (102)
T PF00543_consen 10 LEEVIEALREAGVPG-MTV------------SEVRGRGRQKGQAEIYRGDEYFVEFSPKVKIEIVVPDEDVEEIVEAIS 75 (102)
T ss_dssp HHHHHHHHHHTTGSC-EEE------------EEEEEESSTTTEEEEETTEEECCCEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCe-EEE------------EEeEEecccccccceeeeeeeeecccccEEEEEEECHHhHHHHHHHHH
Confidence 345667777775444 676 34556665543 22 37889999999999999988885
No 412
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=28.32 E-value=91 Score=37.24 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=44.7
Q ss_pred eccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 54 LTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 54 LTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
-|||....+.++..++.++++||+.++++.||-. |..|..|.++ +..|. .++|-|.+-|--
T Consensus 457 gtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs------------~~~a~~L~~~-~~~~~-~~~i~vvgIPkT 517 (745)
T TIGR02478 457 GTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEA------------FEALLQLEQA-REKYP-AFRIPMVVIPAT 517 (745)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHH------------HHHHHHHHHH-HhhCC-CCCccEEEeccc
Confidence 3777655678889999999999999999999863 3446666655 55554 267777777743
No 413
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=28.16 E-value=2.8e+02 Score=32.86 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCcEE--EeccCCCHHHHHHHHHHHHHcCCCCcEEee-ec-----ccCCHHHHHH-HhccCCCCCCHHHH
Q 008423 148 LLYLKKKVDAGADLI--ITQLFYDTDMFLKFVNDCRQIGITCPIVPG-IM-----PINNYKGFLR-MTGFCKTKIPAEIT 218 (566)
Q Consensus 148 l~~Lk~KvdAGAdFi--ITQlffD~d~f~~f~~~~R~~Gi~vPIIpG-Im-----PI~s~~~~~r-~~~l~Gv~VP~~il 218 (566)
...+-.++.-|||+| -.-+..+.|.+.+-++.+|++|++.=||+| -. || +++.+++ ..+..++.+|-.++
T Consensus 193 ~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i-~ae~vk~~~~k~lv~g~p~Til 271 (666)
T KOG2440|consen 193 YLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPI-IAEEVKERKLKVLVVGVPKTIL 271 (666)
T ss_pred hHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcc-cHHHHHHhhhheeeecceeeec
Confidence 345778888999964 456778899999999999999988655544 32 33 3444543 34678899998887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc---CCCeEEEEcCCchHHHHHHHH
Q 008423 219 AALEPIKDNEEAVKAYGIHLGAEMCKKILAH---GIKTLHLYTLNMEKSALAILL 270 (566)
Q Consensus 219 ~~Le~~kddde~vk~~Gv~la~e~i~~L~~~---Gv~GiHfyTlN~e~~v~~IL~ 270 (566)
-.+......-.-=+..+++...|++..++.. ..+|.||--+-+-+++..-++
T Consensus 272 Gdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~ 326 (666)
T KOG2440|consen 272 GDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLE 326 (666)
T ss_pred CccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHH
Confidence 7776543211111335667777777777632 488999877766555544443
No 414
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=28.05 E-value=99 Score=34.70 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
+.+..+.+ .|- +++. |||. ....+..++.+++.||+.++++.||-. +.-|..|-+.+++. +
T Consensus 139 ~~v~~i~~-~GG-TiLG-TsR~--~~~~~~iv~~L~~~~I~~L~vIGGdgT------------~~gA~~l~ee~~~~-g- 199 (443)
T PRK06830 139 EVVADIHE-FGG-TILG-SSRG--PQDPEEIVDTLERMNINILFVIGGDGT------------LRGASAIAEEIERR-G- 199 (443)
T ss_pred HHHhhHHh-CCC-cccc-CCCC--chhHHHHHHHHHHcCCCEEEEeCCchH------------HHHHHHHHHHHHHh-C-
Confidence 33444444 343 4454 5553 356788889999999999999999964 33477777777653 4
Q ss_pred ceeEEEEecCCC
Q 008423 117 YFGITVAGYPEG 128 (566)
Q Consensus 117 ~F~IGVAgyPEg 128 (566)
+.|.|.+-|--
T Consensus 200 -~~I~VIGIPKT 210 (443)
T PRK06830 200 -LKISVIGIPKT 210 (443)
T ss_pred -CCceEEEeccc
Confidence 57888888853
No 415
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=28.00 E-value=4.2e+02 Score=30.00 Aligned_cols=169 Identities=15% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH-----cCCceeEEEEecCCCCCCCCCCCC
Q 008423 63 KIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA-----YGDYFGITVAGYPEGHPDTIGPDG 137 (566)
Q Consensus 63 ~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~-----~gd~F~IGVAgyPEgHpe~~~~~~ 137 (566)
.+.+++....+.+++.+.++..|-. .. +.-...||++..... .+ ...+|.+.....
T Consensus 164 sL~eAl~lM~~~~i~~LPVVD~~g~--------Lv-GIIT~~DLl~~~~~~~~~d~~g-rl~Vgaav~~~~--------- 224 (475)
T TIGR01303 164 EPRKAFDLLEHAPRDVAPLVDADGT--------LA-GILTRTGALRATIYTPATDAAG-RLRIGAAVGING--------- 224 (475)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCe--------EE-EEEEHHHHHHHHhCCchhhhcc-CceehheeeeCc---------
Confidence 4566777778888888877743311 01 222356665543211 11 345555543211
Q ss_pred CCCccchHHHHHHHHHHHHcCCcEEE---eccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCC-
Q 008423 138 VASNESYQSDLLYLKKKVDAGADLII---TQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKI- 213 (566)
Q Consensus 138 ~~~~~~~~~dl~~Lk~KvdAGAdFiI---TQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~V- 213 (566)
+..++++.=+++|+|.|+ |+ -..+.+++.++.+|+.-.++|||+|- +.|+..++.+.+ +|+..
T Consensus 225 --------~~~~ra~~Lv~aGVd~i~~D~a~--g~~~~~~~~i~~i~~~~~~~~vi~g~--~~t~~~~~~l~~-~G~d~i 291 (475)
T TIGR01303 225 --------DVGGKAKALLDAGVDVLVIDTAH--GHQVKMISAIKAVRALDLGVPIVAGN--VVSAEGVRDLLE-AGANII 291 (475)
T ss_pred --------cHHHHHHHHHHhCCCEEEEeCCC--CCcHHHHHHHHHHHHHCCCCeEEEec--cCCHHHHHHHHH-hCCCEE
Confidence 346677777789999876 55 35588899999999876789999992 345555554432 22211
Q ss_pred -----CHHHHHHhCCCCCCHHHHHHHHHHH---HHHHHHHHHHcCCCeEEEEcCCchHHHHHHHHHcCC
Q 008423 214 -----PAEITAALEPIKDNEEAVKAYGIHL---GAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 214 -----P~~il~~Le~~kddde~vk~~Gv~l---a~e~i~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
|-.+- .... +..+|+.. ..+.++.+.+. |+++..-+.-+....|.++|.+
T Consensus 292 ~vg~g~Gs~~-ttr~-------~~~~g~~~~~a~~~~~~~~~~~---~~~viadGgi~~~~di~kala~ 349 (475)
T TIGR01303 292 KVGVGPGAMC-TTRM-------MTGVGRPQFSAVLECAAEARKL---GGHVWADGGVRHPRDVALALAA 349 (475)
T ss_pred EECCcCCccc-cCcc-------ccCCCCchHHHHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHc
Confidence 00000 0000 11111111 12333333343 6778888877777888887755
No 416
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.46 E-value=1.7e+02 Score=28.96 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCccc-HHHHHHHHHHHcCCceeEEEEecCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~ 135 (566)
+..|...|.+..+-|++=+| ++|- -+|+. |.+.|.-++++|+ ++.++|+.==+.|.+..+.
T Consensus 28 Kkai~~~l~~lleeGleW~l-itGq------------LG~E~WA~Evv~eLk~eyp-~ik~avitpFe~q~~~WnE 89 (180)
T COG4474 28 KKAIKKKLEALLEEGLEWVL-ITGQ------------LGFELWAAEVVIELKEEYP-HIKLAVITPFEEQGKNWNE 89 (180)
T ss_pred HHHHHHHHHHHHhcCceEEE-Eecc------------ccHHHHHHHHHHHHHhhCC-CeeEEEEechhhhccccCc
Confidence 56788889999999999888 6662 24555 8888888999997 5899988777888776654
No 417
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=27.40 E-value=7.2e+02 Score=27.57 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=56.3
Q ss_pred ccCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSN--GIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIG 134 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~--GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~ 134 (566)
|.++.+.+.+.|+.+.+. |+++|... +|.... .-..+.+|.+.|++ .+ +...+ +....
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~-Dd~f~~---------~~~~~~~l~~~l~~-~~--i~~~~--~~~~~----- 284 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFD-DDTFTD---------DKPRAEEIARKLGP-LG--VTWSC--NARAN----- 284 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEe-CCCCCC---------CHHHHHHHHHHHhh-cC--ceEEE--EecCC-----
Confidence 345778888888888664 89988763 332211 11247788888764 33 22222 21111
Q ss_pred CCCCCCccchHHHHHHHHHHHHcCCcEEEecc-------------CCCHHHHHHHHHHHHHcCCC
Q 008423 135 PDGVASNESYQSDLLYLKKKVDAGADLIITQL-------------FYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 135 ~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl-------------ffD~d~f~~f~~~~R~~Gi~ 186 (566)
.+ ++.++.|+ +||...+.-=+ -.+.+.+.+.++.|+++||.
T Consensus 285 ~~--------~e~l~~l~---~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~ 338 (472)
T TIGR03471 285 VD--------YETLKVMK---ENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIK 338 (472)
T ss_pred CC--------HHHHHHHH---HcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCe
Confidence 11 13344444 37877542111 24677778888888888864
No 418
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=27.31 E-value=8.8e+02 Score=26.85 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=67.5
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 91 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~ 91 (566)
.+.+...++++|-.-+ . ...-.+....++ .+|+.++.-+....-..+.++.. ..+++-|++.+|=.|...
T Consensus 245 ~~a~aGAD~vTVH~ea--~-~~ti~~ai~~ak-k~GikvgVD~lnp~tp~e~i~~l-----~~~vD~Vllht~vdp~~~- 314 (391)
T PRK13307 245 MAADATADAVVISGLA--P-ISTIEKAIHEAQ-KTGIYSILDMLNVEDPVKLLESL-----KVKPDVVELHRGIDEEGT- 314 (391)
T ss_pred HHHhcCCCEEEEeccC--C-HHHHHHHHHHHH-HcCCEEEEEEcCCCCHHHHHHHh-----hCCCCEEEEccccCCCcc-
Confidence 4556667777665322 1 111223344444 47887777433322223333332 468888888875544321
Q ss_pred CccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcE-EEeccCCCH
Q 008423 92 KFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADL-IITQLFYDT 170 (566)
Q Consensus 92 ~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlffD~ 170 (566)
..+.+-|+.+|+... .+.|.|+| |- + .+.+++=+++|||+ ++--.+|..
T Consensus 315 ---------~~~~~kI~~ikk~~~-~~~I~VdG---GI----~-------------~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 315 ---------EHAWGNIKEIKKAGG-KILVAVAG---GV----R-------------VENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred ---------cchHHHHHHHHHhCC-CCcEEEEC---Cc----C-------------HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 124556777776533 35677776 21 1 12244444689995 555666655
Q ss_pred HHHHHHHHHHH
Q 008423 171 DMFLKFVNDCR 181 (566)
Q Consensus 171 d~f~~f~~~~R 181 (566)
+...+-+++++
T Consensus 365 ~Dp~~aak~l~ 375 (391)
T PRK13307 365 KDVRRAAEDFL 375 (391)
T ss_pred CCHHHHHHHHH
Confidence 44444444444
No 419
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=27.30 E-value=6.1e+02 Score=27.97 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=71.5
Q ss_pred hcCCceeEEecc--ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-C-CCCccccCCCcccHHHHHHHHHHHcCCceeE
Q 008423 45 TICVETMMHLTC--TNMPVEKIDHALQTIKSNGIQNVLALRGDPPH-G-QDKFVQIQGGFACALDLVKHIRSAYGDYFGI 120 (566)
Q Consensus 45 ~~Gle~i~HLTC--rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~-~-~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~I 120 (566)
.+....++...- |.++.+.+.+.+..+.+.|++.|. |.|+... - +... .+.-..-.+|++.|.+..+. ..|
T Consensus 158 ~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~-l~~~~~~~y~g~d~---~~~~~~l~~Ll~~l~~~~~~-~~i 232 (438)
T TIGR01574 158 FCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREIT-LLGQNVNAYRGKDF---EGKTMDFSDLLRELSTIDGI-ERI 232 (438)
T ss_pred CCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEE-EEecccCCccCCCC---CCCcccHHHHHHHHHhcCCc-eEE
Confidence 344445554432 445778899999999999999987 4555432 1 1100 01111246778777654442 233
Q ss_pred EE-EecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcC--CcEEE-----------ecc--CCCHHHHHHHHHHHHHcC
Q 008423 121 TV-AGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAG--ADLII-----------TQL--FYDTDMFLKFVNDCRQIG 184 (566)
Q Consensus 121 GV-AgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAG--AdFiI-----------TQl--ffD~d~f~~f~~~~R~~G 184 (566)
.. ..+|... +. +.++.|++ +| ..++- ..| -|+.+.+.+.++.+|+++
T Consensus 233 r~~~~~p~~l----~~----------ell~~l~~---~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~ 295 (438)
T TIGR01574 233 RFTSSHPLDF----DD----------DLIEVFAN---NPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAAC 295 (438)
T ss_pred EEecCCcccC----CH----------HHHHHHHh---CCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 32 2244321 11 33443332 33 33321 111 378888999999999873
Q ss_pred CCC----cEEeeecccCCHHHHH
Q 008423 185 ITC----PIVPGIMPINNYKGFL 203 (566)
Q Consensus 185 i~v----PIIpGImPI~s~~~~~ 203 (566)
..+ -+|.|+ |=.|...+.
T Consensus 296 ~~i~i~~d~IvG~-PgEt~ed~~ 317 (438)
T TIGR01574 296 PNVSISTDIIVGF-PGETEEDFE 317 (438)
T ss_pred CCCeEeeCEEEeC-CCCCHHHHH
Confidence 223 457776 444555443
No 420
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=27.30 E-value=4.9e+02 Score=27.14 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=90.5
Q ss_pred HHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe---cCCCCCCCCCcc-----ccCCCcc--cHHHHHHHH
Q 008423 41 RMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL---RGDPPHGQDKFV-----QIQGGFA--CALDLVKHI 110 (566)
Q Consensus 41 ~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL---rGDpp~~~~~~~-----~~~~~F~--~A~dLVk~I 110 (566)
.+++.-..-.|+|+|+-+-+.+...+.+..+.+.|+.= +=| --||-.+|..=+ .-..+++ ...++++.|
T Consensus 3 ~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~-iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~i 81 (259)
T PF00290_consen 3 ELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADI-IEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEI 81 (259)
T ss_dssp HHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSS-EEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred hHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCE-EEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34444456679999999999999999999999999853 333 223333321000 0123444 367888999
Q ss_pred HHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HcCCc-EEEeccCCCHHHHHHHHHHHHHcCCCCc
Q 008423 111 RSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKV-DAGAD-LIITQLFYDTDMFLKFVNDCRQIGITCP 188 (566)
Q Consensus 111 r~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kv-dAGAd-FiITQlffD~d~f~~f~~~~R~~Gi~vP 188 (566)
|+++. ...|-+-+|=+-. .+.-+++..++. ++|+| +||-=+=++ ....|.+.|++.|+ .
T Consensus 82 r~~~~-~~pivlm~Y~N~i--------------~~~G~e~F~~~~~~aGvdGlIipDLP~e--e~~~~~~~~~~~gl--~ 142 (259)
T PF00290_consen 82 RKKEP-DIPIVLMTYYNPI--------------FQYGIERFFKEAKEAGVDGLIIPDLPPE--ESEELREAAKKHGL--D 142 (259)
T ss_dssp HHHCT-SSEEEEEE-HHHH--------------HHH-HHHHHHHHHHHTEEEEEETTSBGG--GHHHHHHHHHHTT---E
T ss_pred hccCC-CCCEEEEeeccHH--------------hccchHHHHHHHHHcCCCEEEEcCCChH--HHHHHHHHHHHcCC--e
Confidence 96554 3677777776421 001234444444 68998 466666664 44678899999994 5
Q ss_pred EEeeecccCCHHHHHHHhc
Q 008423 189 IVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 189 IIpGImPI~s~~~~~r~~~ 207 (566)
+|+=|.|-++...+.++++
T Consensus 143 ~I~lv~p~t~~~Ri~~i~~ 161 (259)
T PF00290_consen 143 LIPLVAPTTPEERIKKIAK 161 (259)
T ss_dssp EEEEEETTS-HHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
Confidence 6777778888887777654
No 421
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=27.16 E-value=9.5e+02 Score=27.17 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHH
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEI 217 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~i 217 (566)
.|+..+- .+.-...+|+|+. .....+.+++..--+.+|...|+ =.+-+.++.+++++|+. |+.+
T Consensus 231 ~eL~~~~----~~~~~c~~~P~ls-~aa~~Le~~~gvp~~~~P~PiGi--~~Td~fLr~Ia~~~G~~-pe~l 294 (457)
T CHL00073 231 TDLPSLG----EGVYVCGVNPFLS-RTATTLMRRRKCKLIGAPFPIGP--DGTRAWIEKICSVFGIE-PQGL 294 (457)
T ss_pred HHHHhhC----cccEEEEcCcchH-HHHHHHHHHhCCceeecCCcCcH--HHHHHHHHHHHHHhCcC-HHHH
Confidence 4555544 5566788999998 44433334432111223322222 12334566678899975 7665
No 422
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.09 E-value=4.5e+02 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCC
Q 008423 158 GADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINN 198 (566)
Q Consensus 158 GAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s 198 (566)
..|.||+ .+......+++.|++.|+.+|==.+|+-+.+
T Consensus 68 ~pdaii~---~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 68 RPDAIIC---SNDRLALGVLRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp SSSEEEE---SSHHHHHHHHHHHHHTTSCTTTTSEEEEESS
T ss_pred CCcEEEE---cCHHHHHHHHHHHHHcCCcccccccEEEecC
Confidence 6788876 6777888899999999998884344444444
No 423
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.96 E-value=7.4e+02 Score=25.80 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec-CC
Q 008423 36 LDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR-GD 85 (566)
Q Consensus 36 l~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr-GD 85 (566)
..+...+-+ .|.++++- +-...+.+++..+++...+.|.+||.++- |-
T Consensus 112 ~~LL~~va~-tgkPVilk-~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 112 FEFLKTLSH-IDKPILFK-RGLMATIEEYLGALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred HHHHHHHHc-cCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc
Confidence 455555554 57766653 22245889999999999999999988775 75
No 424
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=26.92 E-value=6.9e+02 Score=25.49 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=25.5
Q ss_pred HHHHHHHHHH-HcCCcEEEeccCCCHHHHHHHHHHHHHcCCC
Q 008423 146 SDLLYLKKKV-DAGADLIITQLFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 146 ~dl~~Lk~Kv-dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~ 186 (566)
.+...+.+|+ +++++.||.-. ..+....+++.+++.|++
T Consensus 204 ~d~~~~l~~l~~~~~~vvv~~~--~~~~~~~~~~~a~~~g~~ 243 (348)
T cd06350 204 EDIKRILKKLKSSTARVIVVFG--DEDDALRLFCEAYKLGMT 243 (348)
T ss_pred HHHHHHHHHHHhCCCcEEEEEe--CcHHHHHHHHHHHHhCCC
Confidence 3444444444 35778888732 335677889999999984
No 425
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=26.89 E-value=7.7e+02 Score=26.02 Aligned_cols=186 Identities=15% Similarity=0.186 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCC--CcccHHHHHHH
Q 008423 32 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQG--GFACALDLVKH 109 (566)
Q Consensus 32 ~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~--~F~~A~dLVk~ 109 (566)
...-++.+..+.+...++++.-+-.---+...+...++.+.++|+--|.+=-...|+.-.+.. ... ..+..++=|+.
T Consensus 58 ~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~-g~~lv~~ee~~~kI~A 136 (285)
T TIGR02317 58 LDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLP-GKELVSREEMVDKIAA 136 (285)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCC-CccccCHHHHHHHHHH
Confidence 345667777878778888887766543468888899999999999988864433332211100 011 12223344444
Q ss_pred HHHH-cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCc
Q 008423 110 IRSA-YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCP 188 (566)
Q Consensus 110 Ir~~-~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vP 188 (566)
+++. .+.+|.|-+-.-.... ...++-++|.+.=.+||||-+.-.-.=+.+.+.+|.+.+ ..|
T Consensus 137 a~~a~~~~d~~IiARTDa~~~------------~g~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i-----~~P 199 (285)
T TIGR02317 137 AVDAKRDEDFVIIARTDARAV------------EGLDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV-----KVP 199 (285)
T ss_pred HHHhccCCCEEEEEEcCcccc------------cCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-----CCC
Confidence 4442 2334655443322211 124477999999999999977655555788777766653 467
Q ss_pred EEeeec-----ccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 008423 189 IVPGIM-----PINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG 250 (566)
Q Consensus 189 IIpGIm-----PI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~G 250 (566)
+++-++ |..|.+.+..+ -+.=+..|...+... +.-..+..+.+++.|
T Consensus 200 l~~n~~~~~~~p~~s~~eL~~l-Gv~~v~~~~~~~~aa--------------~~a~~~~~~~l~~~g 251 (285)
T TIGR02317 200 LLANMTEFGKTPLFTADELREA-GYKMVIYPVTAFRAM--------------NKAAEAVYNEIKEHG 251 (285)
T ss_pred EEEEeccCCCCCCCCHHHHHHc-CCcEEEEchHHHHHH--------------HHHHHHHHHHHHHcC
Confidence 754444 55666666542 223345665554332 223345566666655
No 426
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=26.84 E-value=5.8e+02 Score=28.00 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 92 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~ 92 (566)
..+++..++.|++|+++|++.++ |+-|-|..+.+
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alv-lTvD~p~~G~R 164 (367)
T PLN02493 131 YKNRNVVEQLVRRAERAGFKAIA-LTVDTPRLGRR 164 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-EEcCCCCCCcc
Confidence 44788889999999999988765 89998876543
No 427
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=26.80 E-value=7.8e+02 Score=28.05 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=85.7
Q ss_pred hhccCCCcCEEE----ecCCCCCCCc---hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEec
Q 008423 11 TAWWPTTRHSAT----SRWGAGGSTA---DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 11 ~~~~~~~p~fVs----VTwgagG~~~---~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
.++|.+..|||- +++.+-.... ...++....++++.|-.++.-++.+.-+..++.+..+.+.+.|..-+++-
T Consensus 190 y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~- 268 (475)
T CHL00040 190 YECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHD- 268 (475)
T ss_pred HHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEe-
Confidence 456777777762 2222222212 23556666777778987776665554456788888888999999776632
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
+. ..+|. -++.+++...+ ..+-+-++|.+|.-. .+++ -.-+. .-+.+|-+= ||||.+
T Consensus 269 --~~---------~~G~~----al~~l~~~~~~-~~l~IhaHrA~~ga~~r~~~---~Gis~-~vl~KL~RL--aGaD~i 326 (475)
T CHL00040 269 --YL---------TGGFT----ANTSLAHYCRD-NGLLLHIHRAMHAVIDRQKN---HGIHF-RVLAKALRM--SGGDHI 326 (475)
T ss_pred --cc---------ccccc----hHHHHHHHhhh-cCceEEeccccccccccCcc---CCCcH-HHHHHHHHH--cCCCcc
Confidence 11 12333 24555542111 346667888888431 1111 01122 124444443 799998
Q ss_pred -----EeccCCCHHHHHHHHHHHHH
Q 008423 163 -----ITQLFYDTDMFLKFVNDCRQ 182 (566)
Q Consensus 163 -----ITQlffD~d~f~~f~~~~R~ 182 (566)
+-=+..+.+.+..+.+.|++
T Consensus 327 h~~t~~gk~~g~~~~~~~~~~~~~~ 351 (475)
T CHL00040 327 HAGTVVGKLEGEREMTLGFVDLLRD 351 (475)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHh
Confidence 55566677777888777776
No 428
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=26.46 E-value=36 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCC
Q 008423 65 DHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 65 ~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
...+..|+++|++.||+.+|-...
T Consensus 32 ~~Di~~a~~~G~~~ilV~tG~~~~ 55 (75)
T PF13242_consen 32 ETDIEAAKAAGIDTILVLTGVYSP 55 (75)
T ss_dssp TTHHHHHHHTTSEEEEESSSSSCC
T ss_pred HhHHHHHHHcCCcEEEECCCCCCH
Confidence 467788999999999999998754
No 429
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=26.38 E-value=1.1e+02 Score=36.64 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=45.5
Q ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCC
Q 008423 55 TCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEG 128 (566)
Q Consensus 55 TCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEg 128 (566)
|||....+.++..+...++.||+.++++.||-. |..|..|-++. ++|. .|+|-|.+-|--
T Consensus 458 T~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs------------~~~a~~L~~~~-~~y~-~~~i~vVgIPkT 517 (762)
T cd00764 458 TKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEA------------YKGLLQLREAR-EQYE-EFCIPMVLIPAT 517 (762)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCCEEEEECChhH------------HHHHHHHHHHH-hhCC-CCCccEEEeccc
Confidence 667666788999999999999999999999843 45566665543 4564 378888888853
No 430
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.37 E-value=3.4e+02 Score=27.43 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=33.6
Q ss_pred HHHHHHHhhc-CCceeEEeccc-c----------CCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 008423 37 DIANRMQNTI-CVETMMHLTCT-N----------MPVEKIDHALQTIKSNGIQNVLALRGDPP 87 (566)
Q Consensus 37 ~la~~lq~~~-Gle~i~HLTCr-d----------~n~~~L~~~L~~a~~~GIrNILaLrGDpp 87 (566)
++...+. .. ++.+.+|..+. + ...+.+...++.|+++|++.|.+-.|..+
T Consensus 49 ~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~ 110 (279)
T cd00019 49 KFKAIAE-EGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYL 110 (279)
T ss_pred HHHHHHH-HcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3333333 45 78888886542 1 13456788899999999998887666543
No 431
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.35 E-value=1.3e+02 Score=31.59 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=48.5
Q ss_pred ccccchhhccC-CCcCEEEecCCCCC-C---CchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEE
Q 008423 5 TCSSGWTAWWP-TTRHSATSRWGAGG-S---TADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNV 79 (566)
Q Consensus 5 ~~~~~~~~~~~-~~p~fVsVTwgagG-~---~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNI 79 (566)
|+++...+|.+ +.+|++.|.-|+-- . .....++..+.+++..+++.++|= +.+.+.+.+... .++||+.|
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hG-gSGi~~e~i~~~----i~~Gi~ki 227 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHG-ASGIPEEQIKKA----IKLGIAKI 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEEC-CCCCCHHHHHHH----HHcCCCEE
Confidence 56677788886 88899887655421 1 123457777888887889999984 347777665554 45788777
Q ss_pred E
Q 008423 80 L 80 (566)
Q Consensus 80 L 80 (566)
=
T Consensus 228 N 228 (282)
T TIGR01859 228 N 228 (282)
T ss_pred E
Confidence 5
No 432
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.31 E-value=5.5e+02 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 008423 62 EKIDHALQTIKSNGIQNVLALRGD 85 (566)
Q Consensus 62 ~~L~~~L~~a~~~GIrNILaLrGD 85 (566)
..+++.+..++++|.+.|=+-.++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~ 44 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDE 44 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCc
Confidence 357788899999999999764333
No 433
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.13 E-value=4.7e+02 Score=27.70 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhhcCCceeEEeccc---cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTCT---NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKH 109 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTCr---d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~ 109 (566)
..+.+....+++ .|+++....+-. |-|.+.+.+....+.++||...-+-.-||..+..++ .-....+.++++.
T Consensus 214 ~~~~~ai~~L~~-~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~ 289 (321)
T TIGR03822 214 AEARAACARLID-AGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF---RVTIEEGQALVRA 289 (321)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc---cCcHHHHHHHHHH
Confidence 557777777775 788886665433 357778888888899999998877777876553322 1223347888888
Q ss_pred HHHHcC
Q 008423 110 IRSAYG 115 (566)
Q Consensus 110 Ir~~~g 115 (566)
+++...
T Consensus 290 l~~~~~ 295 (321)
T TIGR03822 290 LRGRIS 295 (321)
T ss_pred HHHhCC
Confidence 887654
No 434
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=26.05 E-value=5.8e+02 Score=28.05 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEE-ecCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVA-GYPEGHPDTIGP 135 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVA-gyPEgHpe~~~~ 135 (566)
|.++.+.+.+.+..+.+.|++.|..+..|-..-+.. .+ ..-.+|++.+.+..+ .+.+-+. .+|..-. ..
T Consensus 160 rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d----~~--~~l~~Ll~~l~~i~~-~~~ir~~~~~p~~~~---~~ 229 (420)
T TIGR01578 160 ASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRD----IG--SRLPELLRLITEIPG-EFRLRVGMMNPKNVL---EI 229 (420)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCC----CC--cCHHHHHHHHHhCCC-CcEEEEcCCCCCccc---cc
Confidence 445778999999999999999998665554321110 01 124567777664333 2333322 2342210 11
Q ss_pred CCCCCccchHHHHHHHHH-H--------HHcCCcEEEecc--CCCHHHHHHHHHHHHHc--CCC--CcEEeeecccCCHH
Q 008423 136 DGVASNESYQSDLLYLKK-K--------VDAGADLIITQL--FYDTDMFLKFVNDCRQI--GIT--CPIVPGIMPINNYK 200 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~-K--------vdAGAdFiITQl--ffD~d~f~~f~~~~R~~--Gi~--vPIIpGImPI~s~~ 200 (566)
. +..++.++. + ++.|.|-+.-++ -|+.+.+.+.++.+++. |+. .-+|.|+ |=.+.+
T Consensus 230 ~--------~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~-PgET~e 300 (420)
T TIGR01578 230 L--------DELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGF-PTETDD 300 (420)
T ss_pred C--------HHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeC-CCCCHH
Confidence 1 122222321 1 112333333333 47888899999999987 532 2356665 455555
Q ss_pred HHH
Q 008423 201 GFL 203 (566)
Q Consensus 201 ~~~ 203 (566)
.+.
T Consensus 301 d~~ 303 (420)
T TIGR01578 301 DFE 303 (420)
T ss_pred HHH
Confidence 443
No 435
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.04 E-value=8.2e+02 Score=26.05 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.+.+.+.+..+.+.|++.+=+=-|.+.. |......+....+.|+.+|+..|+.+.|-|=+| .+. +.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~----~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN-~~~----~~---- 189 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQ----WIDTSKKVDAAVERVAALREAVGPDIDIGVDFH-GRV----SK---- 189 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcc----cCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC-CCC----CH----
Confidence 55667777777888999887653342211 111112345568889999999987777777554 221 22
Q ss_pred CccchHHHHHHHHHHHHcCCcEEEeccCC--CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhcc--CCCCCCH
Q 008423 140 SNESYQSDLLYLKKKVDAGADLIITQLFY--DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGF--CKTKIPA 215 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiITQlff--D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l--~Gv~VP~ 215 (566)
++..++.++++.=-=..|=|++- |.+.+.++.++ ..+||..|=. +.+...+.++.+. +.+-.|+
T Consensus 190 ------~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~-----~~~pia~dEs-~~~~~~~~~~~~~~~~d~v~~d 257 (352)
T cd03325 190 ------PMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAAR-----TTIPIATGER-LFSRWDFKELLEDGAVDIIQPD 257 (352)
T ss_pred ------HHHHHHHHhccccCCcEEECCCCccCHHHHHHHHHh-----CCCCEEeccc-ccCHHHHHHHHHhCCCCEEecC
Confidence 33444445543211236889994 55555444332 3588888764 5567777665432 2222221
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 216 EITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 216 ~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
-.+-=|+.-+.++++...+.|++
T Consensus 258 --------------~~~~GGit~~~~~~~lA~~~gi~ 280 (352)
T cd03325 258 --------------ISHAGGITELKKIAAMAEAYDVA 280 (352)
T ss_pred --------------ccccCCHHHHHHHHHHHHHcCCc
Confidence 01223577777887777777633
No 436
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.04 E-value=4.5e+02 Score=23.04 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHH
Q 008423 27 AGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDL 106 (566)
Q Consensus 27 agG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dL 106 (566)
++|..++.-+.+...+.+..|.++ .++- .+.+.+.+.+. +.+...+ ++++..-. ...+..+.++
T Consensus 7 ~~~e~H~lG~~~~~~~l~~~G~~V-~~lg-~~~~~~~l~~~---~~~~~pd-vV~iS~~~----------~~~~~~~~~~ 70 (119)
T cd02067 7 VGGDGHDIGKNIVARALRDAGFEV-IDLG-VDVPPEEIVEA---AKEEDAD-AIGLSGLL----------TTHMTLMKEV 70 (119)
T ss_pred eCCchhhHHHHHHHHHHHHCCCEE-EECC-CCCCHHHHHHH---HHHcCCC-EEEEeccc----------cccHHHHHHH
Confidence 556666666667777776789998 3443 34565555444 4455555 55554331 1234568899
Q ss_pred HHHHHHHcCCceeEEEEecCC
Q 008423 107 VKHIRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 107 Vk~Ir~~~gd~F~IGVAgyPE 127 (566)
++.+|+...++..|.++|.+.
T Consensus 71 i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 71 IEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHHcCCCCCeEEEECCCC
Confidence 999998754256788887653
No 437
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=25.99 E-value=6.2e+02 Score=26.36 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc-cHHHHH--HHHH-HHcCCceeEEEEe
Q 008423 49 ETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA-CALDLV--KHIR-SAYGDYFGITVAG 124 (566)
Q Consensus 49 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~-~A~dLV--k~Ir-~~~gd~F~IGVAg 124 (566)
++=.|+..|.. ++|......||+.++.+.=||-... ...+|. +=..|+ +.-| +++|-...++|..
T Consensus 4 D~HiH~d~r~~------eDlekMa~sGI~~Vit~AhdP~~~~-----~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv 72 (254)
T COG1099 4 DSHIHLDVRGF------EDLEKMALSGIREVITLAHDPYPMK-----TAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV 72 (254)
T ss_pred ccccccccccH------HHHHHHHHhChhhhhhcccCCCCcc-----cHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence 44456666543 4677778899999999999984321 112222 111121 1112 2467778899999
Q ss_pred cCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC------HHHHHHHHHHHHHcCCCCcEEeeecccCC
Q 008423 125 YPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD------TDMFLKFVNDCRQIGITCPIVPGIMPINN 198 (566)
Q Consensus 125 yPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD------~d~f~~f~~~~R~~Gi~vPIIpGImPI~s 198 (566)
+|-+-|.. .+..+.+|.++...----.|--.-++ .+.|..=++..|+ .++|||.== |=.+
T Consensus 73 HPr~iP~e-----------~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e--~dvPviVHT-Pr~n 138 (254)
T COG1099 73 HPRAIPPE-----------LEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARE--LDVPVIVHT-PRRN 138 (254)
T ss_pred CCCCCCch-----------HHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHH--cCCcEEEeC-CCCc
Confidence 99887642 23567777777652112245555553 2334444444444 458887542 3333
Q ss_pred HHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHH-HHHHHHHHHcC-CCeEEEEcCC-chHHHHHHHHHcC
Q 008423 199 YKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLG-AEMCKKILAHG-IKTLHLYTLN-MEKSALAILLNLG 273 (566)
Q Consensus 199 ~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la-~e~i~~L~~~G-v~GiHfyTlN-~e~~v~~IL~~l~ 273 (566)
.+.. -..+++-+...+-++ ..+=|+.+ .|....+++.+ .-|+-+++.- -.....+|+++-|
T Consensus 139 K~e~-----------t~~ildi~~~~~l~~---~lvvIDH~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~ 202 (254)
T COG1099 139 KKEA-----------TSKILDILIESGLKP---SLVVIDHVNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYG 202 (254)
T ss_pred chhH-----------HHHHHHHHHHcCCCh---hheehhcccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhC
Confidence 3322 223444443211111 11112222 35666678765 7899999854 3345567887777
No 438
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=25.96 E-value=4e+02 Score=25.45 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=69.1
Q ss_pred cCCceeEEeccccCCHHHHHHHHHHH----HHcCCCEEEEecCCCCCCCCCccccCCCcccH-HHH-HHHHHHHcCCcee
Q 008423 46 ICVETMMHLTCTNMPVEKIDHALQTI----KSNGIQNVLALRGDPPHGQDKFVQIQGGFACA-LDL-VKHIRSAYGDYFG 119 (566)
Q Consensus 46 ~Gle~i~HLTCrd~n~~~L~~~L~~a----~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A-~dL-Vk~Ir~~~gd~F~ 119 (566)
.|+. +.|+.+.+.+..++.+.+... +..|+. |++.++..--... ...++... .++ ...+|+..+....
T Consensus 25 ~g~~-~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~--l~i~~~~~la~~~---g~~GvHl~~~~~~~~~~r~~~~~~~~ 98 (196)
T TIGR00693 25 GGVT-LVQLRDKGSNTRERLALAEKLQELCRRYGVP--FIVNDRVDLALAL---GADGVHLGQDDLPASEARALLGPDKI 98 (196)
T ss_pred cCCC-EEEEecCCCCHHHHHHHHHHHHHHHHHhCCe--EEEECHHHHHHHc---CCCEEecCcccCCHHHHHHhcCCCCE
Confidence 4764 569999888877665555444 344653 4444332110000 01112111 111 2334554544467
Q ss_pred EEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC------------CHHHHHHHHHHHHHcCCCC
Q 008423 120 ITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY------------DTDMFLKFVNDCRQIGITC 187 (566)
Q Consensus 120 IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff------------D~d~f~~f~~~~R~~Gi~v 187 (566)
||+.++- ...+.+-.++|||++..=++| +.+.+.++.+.+ .++
T Consensus 99 ig~s~h~---------------------~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~----~~~ 153 (196)
T TIGR00693 99 IGVSTHN---------------------LEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS----IDI 153 (196)
T ss_pred EEEeCCC---------------------HHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCC
Confidence 7776521 222345556899997643444 344444443322 147
Q ss_pred cEE--eeecccCCHHHHHHHhccCCCCCCHHHHH
Q 008423 188 PIV--PGIMPINNYKGFLRMTGFCKTKIPAEITA 219 (566)
Q Consensus 188 PII--pGImPI~s~~~~~r~~~l~Gv~VP~~il~ 219 (566)
||+ -||.+ .+.+.+.. +...|+.+-..+++
T Consensus 154 pv~a~GGI~~-~~~~~~~~-~G~~gva~~~~i~~ 185 (196)
T TIGR00693 154 PIVAIGGITL-ENAAEVLA-AGADGVAVVSAIMQ 185 (196)
T ss_pred CEEEECCcCH-HHHHHHHH-cCCCEEEEhHHhhC
Confidence 764 45642 33333332 34566777777763
No 439
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.88 E-value=7.7e+02 Score=25.69 Aligned_cols=133 Identities=8% Similarity=-0.020 Sum_probs=79.4
Q ss_pred ccchhhccCCCcCEEEecCCC--------CCCCchhHH----HHHHHHHhhcCCceeEEecc---c-cCCHHHHHHHHHH
Q 008423 7 SSGWTAWWPTTRHSATSRWGA--------GGSTADLTL----DIANRMQNTICVETMMHLTC---T-NMPVEKIDHALQT 70 (566)
Q Consensus 7 ~~~~~~~~~~~p~fVsVTwga--------gG~~~~~Sl----~la~~lq~~~Gle~i~HLTC---r-d~n~~~L~~~L~~ 70 (566)
..|..+......+.|.|--.. -+.+...++ +++..+++ .|+++...+.. - ..+.+.+.+.+..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~-~G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK-NGIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh-CCCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 445555555566655554311 112333343 34455553 69999887774 2 2367899999999
Q ss_pred HHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHH
Q 008423 71 IKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLY 150 (566)
Q Consensus 71 a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~ 150 (566)
+.++|++.|-+ .|-.... .-....+|++.+++.+++ ..|++-++-. .. .-+..
T Consensus 156 ~~~~G~~~i~l--~DT~G~~--------~P~~v~~l~~~l~~~~~~-~~i~~H~Hnd-------~G---------la~AN 208 (280)
T cd07945 156 LSDLPIKRIML--PDTLGIL--------SPFETYTYISDMVKRYPN-LHFDFHAHND-------YD---------LAVAN 208 (280)
T ss_pred HHHcCCCEEEe--cCCCCCC--------CHHHHHHHHHHHHhhCCC-CeEEEEeCCC-------CC---------HHHHH
Confidence 99999987652 3432111 111378899999887753 4666654322 11 33566
Q ss_pred HHHHHHcCCcEEEeccC
Q 008423 151 LKKKVDAGADLIITQLF 167 (566)
Q Consensus 151 Lk~KvdAGAdFiITQlf 167 (566)
...=++|||+.|=|=+.
T Consensus 209 ~laA~~aGa~~vd~s~~ 225 (280)
T cd07945 209 VLAAVKAGIKGLHTTVN 225 (280)
T ss_pred HHHHHHhCCCEEEEecc
Confidence 66678999998765443
No 440
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.79 E-value=77 Score=29.54 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHH------HHH-HhCCCCCCHHHHHHHHHHHHHHHH
Q 008423 171 DMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE------ITA-ALEPIKDNEEAVKAYGIHLGAEMC 243 (566)
Q Consensus 171 d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~------il~-~Le~~kddde~vk~~Gv~la~e~i 243 (566)
|.|.++++.|+++||.+|+...+. ..-..+.+--.|+-+.--.. ... .....--+.. .+ +.+.+++
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~--~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~-Y~----e~~~~~i 116 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS--WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSP-YR----EFLLEQI 116 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee--cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCcc-HH----HHHHHHH
Confidence 788999999999999999888876 33333333223432111100 000 0000111111 22 5777778
Q ss_pred HHHHH-cCCCeEEE
Q 008423 244 KKILA-HGIKTLHL 256 (566)
Q Consensus 244 ~~L~~-~Gv~GiHf 256 (566)
+++++ ..++||-|
T Consensus 117 ~Ei~~~y~~DGiF~ 130 (132)
T PF14871_consen 117 REILDRYDVDGIFF 130 (132)
T ss_pred HHHHHcCCCCEEEe
Confidence 88876 57899854
No 441
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.77 E-value=6.3e+02 Score=24.62 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVAS 140 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~ 140 (566)
.+-+...+..+...| ..|..|.|.+. .+..+.+.+++.|+. ..| +++ .|.- +.
T Consensus 34 ~dl~~~l~~~~~~~~-~~vfllG~~~~--------------v~~~~~~~l~~~yP~-l~i--~g~-~g~f---~~----- 86 (177)
T TIGR00696 34 PDLMEELCQRAGKEK-LPIFLYGGKPD--------------VLQQLKVKLIKEYPK-LKI--VGA-FGPL---EP----- 86 (177)
T ss_pred HHHHHHHHHHHHHcC-CeEEEECCCHH--------------HHHHHHHHHHHHCCC-CEE--EEE-CCCC---Ch-----
Confidence 345555666667777 67777876653 256777888888874 343 233 2221 11
Q ss_pred ccchHHHHHHHHHHH-HcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeee
Q 008423 141 NESYQSDLLYLKKKV-DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGI 193 (566)
Q Consensus 141 ~~~~~~dl~~Lk~Kv-dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGI 193 (566)
.+.+.+.+.| ++|||+++.=|-.--+. .|+.+.+..- ..+|+.|+
T Consensus 87 -----~~~~~i~~~I~~s~~dil~VglG~PkQE--~~~~~~~~~~-~~~v~~gv 132 (177)
T TIGR00696 87 -----EERKAALAKIARSGAGIVFVGLGCPKQE--IWMRNHRHLK-PDAVMIGV 132 (177)
T ss_pred -----HHHHHHHHHHHHcCCCEEEEEcCCcHhH--HHHHHhHHhC-CCcEEEEe
Confidence 2233444444 46999998877765554 6777776542 35566654
No 442
>PLN02979 glycolate oxidase
Probab=25.68 E-value=6.5e+02 Score=27.74 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 92 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~ 92 (566)
..+++...+.|++|+++|++.++ |+=|-|..+.+
T Consensus 130 ~~Dr~~~~~ll~RA~~aG~~Alv-lTVD~pv~G~R 163 (366)
T PLN02979 130 YKNRNVVEQLVRRAERAGFKAIA-LTVDTPRLGRR 163 (366)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE-EEecCCCCCCc
Confidence 45888889999999999998766 88898876543
No 443
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.61 E-value=6.5e+02 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCC
Q 008423 66 HALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGD 116 (566)
Q Consensus 66 ~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd 116 (566)
+....+.++|++-|.+-..+ + .=....++|+.||+++++
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~---g---------~~~~~~~~v~~ik~~~p~ 194 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAH---G---------HSTRIIELVKKIKTKYPN 194 (404)
T ss_pred HHHHHHHhcCCCEEEEECCC---C---------CChhHHHHHHHHHhhCCC
Confidence 45566677998877753222 1 112477899999998865
No 444
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.48 E-value=7.7e+02 Score=25.55 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=95.5
Q ss_pred cccchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcCCCEEEEec
Q 008423 6 CSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNGIQNVLALR 83 (566)
Q Consensus 6 ~~~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~GIrNILaLr 83 (566)
+.+.....+.+..|.|++-.=+.|+.......+...+....+-....--|.-|. ....+.....++...|++-|=+
T Consensus 9 ~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKv-- 86 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKV-- 86 (235)
T ss_pred CHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEE--
Confidence 445667778889999999988778766566666666666555333344455455 3455555555666778765531
Q ss_pred CCCCCCCCCccccCCCcccHHHHHHHHHHH---cCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCc
Q 008423 84 GDPPHGQDKFVQIQGGFACALDLVKHIRSA---YGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGAD 160 (566)
Q Consensus 84 GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~---~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd 160 (566)
|=.+ .+..+.+.++++.+.+. +...-.+=.++|...|+.. +.+ + .++..+.. ++|++
T Consensus 87 Gl~g---------~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~-~~~-------p-~~l~~~a~--~aG~~ 146 (235)
T PF04476_consen 87 GLFG---------CKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVG-SIS-------P-LDLPEIAA--EAGFD 146 (235)
T ss_pred ecCC---------CCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhc-CCC-------H-HHHHHHHH--HcCCC
Confidence 2111 12344577766554322 2222346677888876531 111 1 34444433 57988
Q ss_pred EEEec----------cCCCHHHHHHHHHHHHHcCC
Q 008423 161 LIITQ----------LFYDTDMFLKFVNDCRQIGI 185 (566)
Q Consensus 161 FiITQ----------lffD~d~f~~f~~~~R~~Gi 185 (566)
.++-- =+.+.+.+.+|++.+|++|+
T Consensus 147 gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL 181 (235)
T PF04476_consen 147 GVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGL 181 (235)
T ss_pred EEEEecccCCCCchhhcCCHHHHHHHHHHHHHccc
Confidence 76521 25689999999999999985
No 445
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=25.43 E-value=4.6e+02 Score=29.08 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=87.2
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCc-EEeee---
Q 008423 118 FGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCP-IVPGI--- 193 (566)
Q Consensus 118 F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vP-IIpGI--- 193 (566)
|.+|+--+|.....+.+. +.--+-+..=++.|.++|=|=.-|....-+.|+.++=..|-.-- .++.-
T Consensus 16 lgfG~MRlp~~~~~~id~---------~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~ 86 (391)
T COG1453 16 LGFGCMRLPLKEQGSIDE---------ENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPS 86 (391)
T ss_pred eccceeecccccCCCccH---------HHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCC
Confidence 788999999875422221 12223355567899999999999944333344444333332211 23333
Q ss_pred cccCCHHHHHHHh----ccCCCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEcCCchHHHHH
Q 008423 194 MPINNYKGFLRMT----GFCKTK-IPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTLHLYTLNMEKSALA 267 (566)
Q Consensus 194 mPI~s~~~~~r~~----~l~Gv~-VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~G-v~GiHfyTlN~e~~v~~ 267 (566)
+|+.+.+.+.|+- +-+|++ +-=-++..|.. +.=+..++.| +.+.++++++.| |+-+=|.+.+-.+.+.+
T Consensus 87 ~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~--e~~~k~~~~g---~~df~~kak~eGkIr~~GFSfHgs~e~~~~ 161 (391)
T COG1453 87 WPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT--ETWEKIERLG---VFDFLEKAKAEGKIRNAGFSFHGSTEVFKE 161 (391)
T ss_pred ccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH--HHHHHHHccC---hHHHHHHHHhcCcEEEeeecCCCCHHHHHH
Confidence 4567777776642 244542 22223333322 1123344444 789999999988 89999999999999999
Q ss_pred HHHHcCC
Q 008423 268 ILLNLGL 274 (566)
Q Consensus 268 IL~~l~l 274 (566)
|++...+
T Consensus 162 iv~a~~~ 168 (391)
T COG1453 162 IVDAYPW 168 (391)
T ss_pred HHhcCCc
Confidence 9998763
No 446
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.39 E-value=2.7e+02 Score=30.48 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHHHH----------cCCCEEEEec-CCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 57 TNMPVEKIDHALQTIKS----------NGIQNVLALR-GDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~----------~GIrNILaLr-GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
|+++..+|-+.+..+.. .+++||+.++ |.|-. .++...+.++.+.+..|
T Consensus 129 rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~----------N~d~v~~al~~l~~~~g 188 (372)
T PRK11194 129 RNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL----------NLNNVVPAMEIMLDDFG 188 (372)
T ss_pred CcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc----------CHHHHHHHHHHHhhhhc
Confidence 67788777777665532 1399999998 55532 23345677777765554
No 447
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=25.32 E-value=8.3e+02 Score=25.86 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCcEEEecc----------CCCHHHHHHHHHHHHHc----CCCCcEEeeecccCCHHHHHHHhccCCC
Q 008423 146 SDLLYLKKKVDAGADLIITQL----------FYDTDMFLKFVNDCRQI----GITCPIVPGIMPINNYKGFLRMTGFCKT 211 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQl----------ffD~d~f~~f~~~~R~~----Gi~vPIIpGImPI~s~~~~~r~~~l~Gv 211 (566)
+|+..+.+++..+||+|.-++ ..|.+.+.+.++.+|+. +.++||..=+.|-.+
T Consensus 148 ~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~------------- 214 (327)
T cd04738 148 EDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLS------------- 214 (327)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCC-------------
Confidence 578888888887899887665 45678888888888864 123676655533110
Q ss_pred CCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 008423 212 KIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLY 257 (566)
Q Consensus 212 ~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfy 257 (566)
+ +-..++++.+.+.|++||++.
T Consensus 215 ----------------~--------~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 215 ----------------D--------EELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred ----------------H--------HHHHHHHHHHHHcCCcEEEEE
Confidence 0 123467777888899999865
No 448
>PRK06256 biotin synthase; Validated
Probab=25.28 E-value=7.6e+02 Score=25.90 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhcCCceeEEecc-ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-cCCCcccHHHHHHHH
Q 008423 33 DLTLDIANRMQNTICVETMMHLTC-TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ-IQGGFACALDLVKHI 110 (566)
Q Consensus 33 ~~Sl~la~~lq~~~Gle~i~HLTC-rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~-~~~~F~~A~dLVk~I 110 (566)
+..++....+++ .|++++.++.. -+-+.+++.+.+..++++|++.|-+ .-=.|..+..... ..........+|...
T Consensus 187 ~~~i~~i~~a~~-~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i-~~l~P~pGT~l~~~~~~~~~e~l~~ia~~ 264 (336)
T PRK06256 187 EDRIDTCEMVKA-AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI-NFLNPIPGTPLENHPELTPLECLKTIAIF 264 (336)
T ss_pred HHHHHHHHHHHH-cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee-cccccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 456677777775 68888777655 3447788888888888888875532 1111222211100 111222345555556
Q ss_pred HHHcCCceeEEEEe
Q 008423 111 RSAYGDYFGITVAG 124 (566)
Q Consensus 111 r~~~gd~F~IGVAg 124 (566)
|-.+++ -.|-++|
T Consensus 265 Rl~~p~-~~I~~~~ 277 (336)
T PRK06256 265 RLINPD-KEIRIAG 277 (336)
T ss_pred HHHCCC-CeeEecC
Confidence 655653 4565553
No 449
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.19 E-value=7.7e+02 Score=27.22 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=68.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEE-EecCCCCCCCCCC
Q 008423 57 TNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITV-AGYPEGHPDTIGP 135 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGV-AgyPEgHpe~~~~ 135 (566)
|.++.+.+.+.+..+.+.|++.|+.+..|-...+... .... .-.+|++.+.+..+ ...|.. ..+|... +.
T Consensus 174 Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~---~~~~-~l~~Ll~~l~~~~~-~~~ir~~~~~P~~i----~~ 244 (439)
T PRK14328 174 RSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDL---EEKI-DFADLLRRVNEIDG-LERIRFMTSHPKDL----SD 244 (439)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCC---CCCc-CHHHHHHHHHhcCC-CcEEEEecCChhhc----CH
Confidence 5667788888889888899999986655543222110 0111 13467777664333 233443 2345321 11
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEE-----------Eecc--CCCHHHHHHHHHHHHHc--CC--CCcEEeeecccCC
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLI-----------ITQL--FYDTDMFLKFVNDCRQI--GI--TCPIVPGIMPINN 198 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFi-----------ITQl--ffD~d~f~~f~~~~R~~--Gi--~vPIIpGImPI~s 198 (566)
+.++.|+ +...|..++ .-.| -|+.+.+.+.++.+|++ ++ ..-+|.|+ |=.|
T Consensus 245 ----------ell~~l~-~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~-PgET 312 (439)
T PRK14328 245 ----------DLIEAIA-DCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGF-PGET 312 (439)
T ss_pred ----------HHHHHHH-hCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEEC-CCCC
Confidence 2333332 221123322 1111 37888899999999987 33 23467777 5566
Q ss_pred HHHHH
Q 008423 199 YKGFL 203 (566)
Q Consensus 199 ~~~~~ 203 (566)
.+.+.
T Consensus 313 ~ed~~ 317 (439)
T PRK14328 313 EEDFE 317 (439)
T ss_pred HHHHH
Confidence 66554
No 450
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.18 E-value=7.9e+02 Score=25.54 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE-ecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLA-LRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILa-LrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
+.+.+.+.++++.+.|.+.|=+ +++|+ +...+.|+.+|+..| .+.|.+=+|- +. +.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~--------------~~d~~~v~~lr~~~g-~~~l~vD~n~-~~----~~--- 190 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDL--------------EDDIERIRAIREAAP-DARLRVDANQ-GW----TP--- 190 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCh--------------hhHHHHHHHHHHhCC-CCeEEEeCCC-Cc----CH---
Confidence 5567777778888889877743 22221 236788999998888 5666654441 11 11
Q ss_pred CCccchHHHHHHHHHHH-HcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCC--CCH
Q 008423 139 ASNESYQSDLLYLKKKV-DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK--IPA 215 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~Kv-dAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~--VP~ 215 (566)
.+..++.+.+ +.|..| |=|++-. +.+.. +.+++++ .++||..|= -+.+...++++.+..++. .|+
T Consensus 191 -------~~A~~~~~~l~~~~l~~-iEeP~~~-~d~~~-~~~L~~~-~~ipIa~~E-~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 191 -------EEAVELLRELAELGVEL-IEQPVPA-GDDDG-LAYLRDK-SPLPIMADE-SCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred -------HHHHHHHHHHHhcCCCE-EECCCCC-CCHHH-HHHHHhc-CCCCEEEeC-CCCCHHHHHHHHhcCCCCEEEEe
Confidence 2222333333 446644 5888852 22222 2334443 468988875 367777777766644443 221
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008423 216 EITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIK 252 (566)
Q Consensus 216 ~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~ 252 (566)
- .+-=|+.-+.++++...++|++
T Consensus 259 ~--------------~~~GGi~~~~~~~~~a~~~gi~ 281 (316)
T cd03319 259 L--------------MKTGGLTEALRIADLARAAGLK 281 (316)
T ss_pred c--------------cccCCHHHHHHHHHHHHHcCCC
Confidence 1 1112566667777777777643
No 451
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.17 E-value=7.7e+02 Score=25.46 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEE-ecCCCCCCCCCccccCCCcccHHHHHHHHHHH
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLA-LRGDPPHGQDKFVQIQGGFACALDLVKHIRSA 113 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILa-LrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~ 113 (566)
...+...+.+ .|.++++= |-...+.+++..+++...+.|.++|.+ -||-..-... .... .-...+..+|+.
T Consensus 121 n~~LL~~~a~-~gkPVilk-~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~----~~~~--~dl~~i~~lk~~ 192 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLK-RGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKA----TRNT--LDLSAVPVLKKE 192 (260)
T ss_pred CHHHHHHHhc-CCCcEEEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCC----CcCC--cCHHHHHHHHHh
Confidence 3445555554 68776653 222337899999999999999988665 4566321000 1111 123334556666
Q ss_pred cCCceeEEE-EecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEE
Q 008423 114 YGDYFGITV-AGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLI 162 (566)
Q Consensus 114 ~gd~F~IGV-AgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFi 162 (566)
++ +-||+ +.+-.|-.+ .-..--+.=+.+||+.+
T Consensus 193 ~~--~pV~~ds~Hs~G~r~--------------~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 193 TH--LPIIVDPSHAAGRRD--------------LVIPLAKAAIAAGADGL 226 (260)
T ss_pred hC--CCEEEcCCCCCCccc--------------hHHHHHHHHHHcCCCEE
Confidence 54 55666 554433211 11222344567999943
No 452
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=25.10 E-value=3e+02 Score=29.21 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=49.2
Q ss_pred eEEEEecC--CCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 119 GITVAGYP--EGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 119 ~IGVAgyP--EgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
.+-|-..| +++|. +++.+.++.+|. --.--|+.=+|=|+|.|.+.++.+.++++.|-|+.- =
T Consensus 120 r~~vy~qPp~~~~p~------------IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD---~ 183 (284)
T PF07894_consen 120 RATVYFQPPKDGQPH------------IKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLD---E 183 (284)
T ss_pred eEEEEeCCCCCCCCC------------HHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEec---h
Confidence 55566777 66553 234455555552 233478999999999999999999888854444333 2
Q ss_pred CCHHHHHHHhccCCCC
Q 008423 197 NNYKGFLRMTGFCKTK 212 (566)
Q Consensus 197 ~s~~~~~r~~~l~Gv~ 212 (566)
++.+.|..|.+-+++.
T Consensus 184 ~~~~~Fl~Mc~~~~v~ 199 (284)
T PF07894_consen 184 QNLPHFLEMCEKLGVN 199 (284)
T ss_pred hcChHHHHHHHHCCCC
Confidence 3444555555544444
No 453
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=25.07 E-value=8.2e+02 Score=25.69 Aligned_cols=178 Identities=17% Similarity=0.147 Sum_probs=101.9
Q ss_pred CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc--cCCCcccHHHHHHHHHHHcCCceeEEEEec
Q 008423 48 VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ--IQGGFACALDLVKHIRSAYGDYFGITVAGY 125 (566)
Q Consensus 48 le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~--~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgy 125 (566)
-+++.=+||-|..-..+- .++|++-|| .||....-....+ ..-.++..+.-++.+++..+. ..=|+--
T Consensus 14 g~~i~m~tayD~~sA~i~------~~aG~d~il--vGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~--~~vv~Dm 83 (263)
T TIGR00222 14 EEKIVAITAYDYSFAKLF------ADAGVDVIL--VGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN--CLIVTDL 83 (263)
T ss_pred CCcEEEEeccCHHHHHHH------HHcCCCEEE--ECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--ceEEeCC
Confidence 378888899987655433 458999888 8987532111000 112233333444556554443 3345666
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEE--eeecccCCHHHH
Q 008423 126 PEGHPDTIGPDGVASNESYQSDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIV--PGIMPINNYKGF 202 (566)
Q Consensus 126 PEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPII--pGImPI~s~~~~ 202 (566)
|.+-.. ++++-+..-.+=++ +||+-+==- |...+...++.+.++| +||+ .|++|..-..
T Consensus 84 Pf~sy~-----------~~e~a~~na~rl~~eaGa~aVkiE---gg~~~~~~i~~l~~~g--IpV~gHiGltPq~a~~-- 145 (263)
T TIGR00222 84 PFMSYA-----------TPEQALKNAARVMQETGANAVKLE---GGEWLVETVQMLTERG--VPVVGHLGLTPQSVNI-- 145 (263)
T ss_pred CcCCCC-----------CHHHHHHHHHHHHHHhCCeEEEEc---CcHhHHHHHHHHHHCC--CCEEEecCCCceeEee--
Confidence 666321 12233444333344 788755322 2244556677888888 6675 8999875321
Q ss_pred HHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCchHHHHHHHHHcCC
Q 008423 203 LRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 203 ~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
.-|..+ ..+++++ .+.+.+-++.+.+.|+.++-+=.+. ++..++|-+++.+
T Consensus 146 -----~ggy~~---------qgrt~~~------a~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~i 196 (263)
T TIGR00222 146 -----LGGYKV---------QGKDEEA------AKKLLEDALALEEAGAQLLVLECVP-VELAAKITEALAI 196 (263)
T ss_pred -----cCCeee---------cCCCHHH------HHHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCCC
Confidence 111221 1222221 1445666777788999999887777 7899999999875
No 454
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.05 E-value=4e+02 Score=25.47 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC-CHHHHHHHHHHH
Q 008423 102 CALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY-DTDMFLKFVNDC 180 (566)
Q Consensus 102 ~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff-D~d~f~~f~~~~ 180 (566)
.+.|+++.+.+.-...=.||+.+|++-.++ +..+.+-+ |.+ +.++.| +.+.+..-++++
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~----------------~~~~~~ll--~~~--i~~~~~~~~~e~~~~i~~~ 121 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPG----------------LESIEELL--GVD--IKIYPYDSEEEIEAAIKQA 121 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCC----------------HHHHHHHH--T-E--EEEEEESSHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHH----------------HHHHHHHh--CCc--eEEEEECCHHHHHHHHHHH
Confidence 378998888764332348999999986532 44555554 443 444444 688999999999
Q ss_pred HHcCCCCcEEeee
Q 008423 181 RQIGITCPIVPGI 193 (566)
Q Consensus 181 R~~Gi~vPIIpGI 193 (566)
++.|++ ++.|=
T Consensus 122 ~~~G~~--viVGg 132 (176)
T PF06506_consen 122 KAEGVD--VIVGG 132 (176)
T ss_dssp HHTT----EEEES
T ss_pred HHcCCc--EEECC
Confidence 999965 55553
No 455
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=25.02 E-value=5.3e+02 Score=31.35 Aligned_cols=101 Identities=12% Similarity=0.193 Sum_probs=62.0
Q ss_pred EEEecCCCCCCCchhHH-HHHHHHHhhcCCceeEEeccccC------CHHHHHHHHHHHHHcCCCE----------EEEe
Q 008423 20 SATSRWGAGGSTADLTL-DIANRMQNTICVETMMHLTCTNM------PVEKIDHALQTIKSNGIQN----------VLAL 82 (566)
Q Consensus 20 fVsVTwgagG~~~~~Sl-~la~~lq~~~Gle~i~HLTCrd~------n~~~L~~~L~~a~~~GIrN----------ILaL 82 (566)
|.-+.--++|.....-+ .+|..++ .+|.. .|+|.+.. ..+.+.+.+..+.++|+.. |.+=
T Consensus 565 ~~v~~~~p~G~lt~~ql~~ia~iA~-kyg~~--~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~g~~vr~v~aC 641 (847)
T PRK14989 565 YSVIPRSAGGEITPEGLMAVGRIAR-EFNLY--TKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTC 641 (847)
T ss_pred EEEEEEcCCcEeCHHHHHHHHHHHH-HHCCc--EEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCCCCCcCceeeC
Confidence 43344568887654444 4555555 57864 59998653 7889999999988887543 2221
Q ss_pred cCCCCCCCCCccccCCCcccHHHHHHHHHHHc-----CCceeEEEEecCCCCCC
Q 008423 83 RGDPPHGQDKFVQIQGGFACALDLVKHIRSAY-----GDYFGITVAGYPEGHPD 131 (566)
Q Consensus 83 rGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~-----gd~F~IGVAgyPEgHpe 131 (566)
.|.. | +.-+...+..|...|.+++ +..|.|++.|-|....+
T Consensus 642 ~G~~------~--C~~g~~dt~~la~~l~~~~~~~~~P~k~ki~vSGC~~~C~~ 687 (847)
T PRK14989 642 VGST------W--CRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCTRECAE 687 (847)
T ss_pred CCCC------c--cccccccHHHHHHHHHHHhccCCCCCceEEEEeCCcccccc
Confidence 1110 1 1223334666666665554 45699999999977544
No 456
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.99 E-value=5.9e+02 Score=26.34 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=62.7
Q ss_pred HHHHHHHhhcCCcee-EEeccccCC------HHHHHHHHHHHHHcCC--CEEEEecCCCCCCCCCccccCCCcccH---H
Q 008423 37 DIANRMQNTICVETM-MHLTCTNMP------VEKIDHALQTIKSNGI--QNVLALRGDPPHGQDKFVQIQGGFACA---L 104 (566)
Q Consensus 37 ~la~~lq~~~Gle~i-~HLTCrd~n------~~~L~~~L~~a~~~GI--rNILaLrGDpp~~~~~~~~~~~~F~~A---~ 104 (566)
+++..+++ +|..+| +|..-++.. .+.+++.+..|.++|| ++|++ ||--+.- ...-..+ +
T Consensus 107 ~~~~l~~~-~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Iil---DPgi~~~-----~~~~~~~~~~l 177 (261)
T PRK07535 107 VVLPLVKK-YNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYI---DPLVLPL-----SAAQDAGPEVL 177 (261)
T ss_pred HHHHHHHH-hCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEE---eCCCCcc-----cCChHHHHHHH
Confidence 34455554 677776 476433332 3556777888899999 58875 4432200 0111234 4
Q ss_pred HHHHHHHHHc-CCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccC
Q 008423 105 DLVKHIRSAY-GDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLF 167 (566)
Q Consensus 105 dLVk~Ir~~~-gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlf 167 (566)
+.++.+++.+ |-...+|+.---+|-|+..- -.--+|..=+++|.|+.|--+.
T Consensus 178 ~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~-----------in~~fl~~a~~~Gl~~aI~np~ 230 (261)
T PRK07535 178 ETIRRIKELYPKVHTTCGLSNISFGLPNRKL-----------INRAFLVMAMGAGMDSAILDPL 230 (261)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCccCCcchHH-----------HHHHHHHHHHHcCCCEEeeCCC
Confidence 4455666666 55677887776666653210 2234455666778777776554
No 457
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=24.97 E-value=1.3e+02 Score=25.93 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=51.3
Q ss_pred CccCCCC-CCCChhHHHHHHHHHHHHhcCcee-ecCCCCCCCCCCCCCcccccCCCceeeeeeeeeeecC-hhhHHHHHH
Q 008423 380 SSPWSEL-DGLQPETKIINEQLGKINVKGFLT-INSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCS-PEKLTALVD 456 (566)
Q Consensus 380 ~lPw~~~-~~l~~et~~i~~~L~~ln~~g~~t-i~SQP~vng~~S~d~~~GwGp~~GyvyQKay~Eff~~-~~~~~~l~~ 456 (566)
.+|+++. ..+.--...+.+.|.+|-++|+++ +.. .+| -...|+ ...+++.+-++ ++..+.+.+
T Consensus 17 ~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~--~~~-----~~~~g~-------~~~~~v~i~~~~~~~~~~v~~ 82 (108)
T smart00344 17 RISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTA--VIN-----PKKLGL-------SVTAFVGVDLESPDKLEEFLE 82 (108)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEE--EeC-----HHHcCC-------CEEEEEEEEECChhHHHHHHH
Confidence 4666662 223334467899999999999998 221 111 111222 25789999999 788999999
Q ss_pred hhcCCCceeEEE
Q 008423 457 KSKALPFITFMA 468 (566)
Q Consensus 457 ~~~~~~~~~y~a 468 (566)
.|.+.|.|++-.
T Consensus 83 ~l~~~p~v~~~~ 94 (108)
T smart00344 83 KLEKLPEVVEVY 94 (108)
T ss_pred HHhCCcceEEee
Confidence 999999887644
No 458
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=24.94 E-value=7.7e+02 Score=25.37 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=73.6
Q ss_pred hccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhc--CCceeEEeccccCCHHH-HHHHHHHHHHcCCCEEEEecCCCCC
Q 008423 12 AWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTI--CVETMMHLTCTNMPVEK-IDHALQTIKSNGIQNVLALRGDPPH 88 (566)
Q Consensus 12 ~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~--Gle~i~HLTCrd~n~~~-L~~~L~~a~~~GIrNILaLrGDpp~ 88 (566)
.+-+...+.|-+++..- +.........+.+.. ..+.+....|+...... =+..++.+.+.|+..|-+...-...
T Consensus 28 ~L~~~Gv~~IE~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~ 104 (273)
T cd07941 28 KLDELGVDYIEGGWPGS---NPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDL 104 (273)
T ss_pred HHHHcCCCEEEecCCcC---CHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHH
Confidence 44555677888876321 223344444554321 23444444332221110 1235666778898877655332110
Q ss_pred -CCCCc-cccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEecc
Q 008423 89 -GQDKF-VQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQL 166 (566)
Q Consensus 89 -~~~~~-~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQl 166 (566)
..... ...+..++.+.++++++|+ .|-..+++...+.++... ++ +.-++..++=.++|++-|. +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~i~~ak~-~G~~v~~~~~~~~d~~~~--~~---------~~~~~~~~~~~~~g~~~i~--l 170 (273)
T cd07941 105 HVTEALGTTLEENLAMIRDSVAYLKS-HGREVIFDAEHFFDGYKA--NP---------EYALATLKAAAEAGADWLV--L 170 (273)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-cCCeEEEeEEeccccCCC--CH---------HHHHHHHHHHHhCCCCEEE--E
Confidence 00000 0011234456677777775 454444444444333211 11 1223333444567888542 3
Q ss_pred C-----CCHHHHHHHHHHHHHc
Q 008423 167 F-----YDTDMFLKFVNDCRQI 183 (566)
Q Consensus 167 f-----fD~d~f~~f~~~~R~~ 183 (566)
. -.++.+.++++.+++.
T Consensus 171 ~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 171 CDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred ecCCCCCCHHHHHHHHHHHHHh
Confidence 2 5677777888887764
No 459
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=24.93 E-value=8.6e+02 Score=27.33 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=76.7
Q ss_pred HHHHHHhhcCCceeEEeccccCCHHHHHHHHHH----HHHcCCCEEEEecCCCCCCCCCccccCCCccc-HHHH-HHHHH
Q 008423 38 IANRMQNTICVETMMHLTCTNMPVEKIDHALQT----IKSNGIQNVLALRGDPPHGQDKFVQIQGGFAC-ALDL-VKHIR 111 (566)
Q Consensus 38 la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~----a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~-A~dL-Vk~Ir 111 (566)
.++.+-+ .| -.+.||...+.+..++.+.... +++.|+. |++-.++.-... . ... ++.. ..|| +..+|
T Consensus 312 ~l~~~l~-~G-v~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~--liind~~~lA~~-~-~ad-GvHl~~~d~~~~~~r 384 (502)
T PLN02898 312 AVRAAIE-GG-ATIVQLREKEAETREFIEEAKACLAICRSYGVP--LLINDRVDVALA-C-DAD-GVHLGQSDMPVRLAR 384 (502)
T ss_pred HHHHHHH-cC-CCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCE--EEEcChHHHHHh-c-CCC-EEEeChHhcCHHHHH
Confidence 3333332 46 4678998888887665554444 3556664 555554321100 0 011 2222 2343 45567
Q ss_pred HHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC-----------HHHHHHHHHHH
Q 008423 112 SAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD-----------TDMFLKFVNDC 180 (566)
Q Consensus 112 ~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD-----------~d~f~~f~~~~ 180 (566)
+..+....||+.+ |. ...+++-.+.||||+.-=++|. .+.+.+|.
T Consensus 385 ~~~~~~~~iG~S~----h~-----------------~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~--- 440 (502)
T PLN02898 385 SLLGPGKIIGVSC----KT-----------------PEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVC--- 440 (502)
T ss_pred HhcCCCCEEEEeC----CC-----------------HHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHH---
Confidence 7677667889886 31 2224555568999987555563 33444442
Q ss_pred HHcCCCCcEE--eeecccCCHHHHHHHhccC---CCCCCHHHH
Q 008423 181 RQIGITCPIV--PGIMPINNYKGFLRMTGFC---KTKIPAEIT 218 (566)
Q Consensus 181 R~~Gi~vPII--pGImPI~s~~~~~r~~~l~---Gv~VP~~il 218 (566)
+ ..++||+ -||- ..+...++. +-.. |+.+-..++
T Consensus 441 ~--~~~~Pv~aiGGI~-~~~~~~~~~-~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 441 E--ASKLPVVAIGGIS-ASNAASVME-SGAPNLKGVAVVSALF 479 (502)
T ss_pred H--cCCCCEEEECCCC-HHHHHHHHH-cCCCcCceEEEEeHHh
Confidence 2 2357874 4563 223333322 2244 666666665
No 460
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=24.92 E-value=7.2e+02 Score=26.94 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcc---cHHHHHHHHHHHcCCceeEE-EEe--c-CCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFA---CALDLVKHIRSAYGDYFGIT-VAG--Y-PEGHPDT 132 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~---~A~dLVk~Ir~~~gd~F~IG-VAg--y-PEgHpe~ 132 (566)
+...+.+.++.+.++||+.|++..=-++...+. . ...-++ .-..-|+.||+.+++-.-|. |+- | .-||--.
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~-~-gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGi 129 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSE-D-GSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGI 129 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCc-c-cccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCccee
Confidence 668899999999999999999764312221111 0 001111 13445666777776422111 111 1 1334111
Q ss_pred CCCCCCCCccchHHHHHHHHH----HHHcCCcEEEeccCCCHHHHHHHHHHHHHcCC-CCc
Q 008423 133 IGPDGVASNESYQSDLLYLKK----KVDAGADLIITQLFYDTDMFLKFVNDCRQIGI-TCP 188 (566)
Q Consensus 133 ~~~~~~~~~~~~~~dl~~Lk~----KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi-~vP 188 (566)
-...+ -+-+.-++.|.+ =.+||||++--==--|-.. ....+.+.+.|. ++|
T Consensus 130 l~~~~----idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~~~v~ 185 (320)
T cd04823 130 VRDGG----ILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRI-GAIREALDAEGFTNVS 185 (320)
T ss_pred ccCCc----CcCHHHHHHHHHHHHHHHHhCCCEEEcccchhhHH-HHHHHHHHHCCCCCCc
Confidence 00000 001133444433 3479999875443334333 345566777786 344
No 461
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=24.89 E-value=3.1e+02 Score=28.97 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=49.5
Q ss_pred hhhccCCCcCEEEecCCCC---------CC--CchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCE
Q 008423 10 WTAWWPTTRHSATSRWGAG---------GS--TADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQN 78 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgag---------G~--~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrN 78 (566)
..++.+...+.|.|+-... |. +-...++....+++ .|+.+....+-...|..++.+.+.-++++|++.
T Consensus 98 ~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~-~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 98 LDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA-AGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred HHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh-CCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 3445555555665554321 11 12445666667765 799988887777889999999999999999998
Q ss_pred EEEe
Q 008423 79 VLAL 82 (566)
Q Consensus 79 ILaL 82 (566)
+.+.
T Consensus 177 i~~~ 180 (358)
T TIGR02109 177 VELA 180 (358)
T ss_pred EEEE
Confidence 8653
No 462
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=24.21 E-value=7.4e+02 Score=24.92 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH-cCCceeEEEEecCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA-YGDYFGITVAGYPEGHPDTIGPDGV 138 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~-~gd~F~IGVAgyPEgHpe~~~~~~~ 138 (566)
+...|.+.|..+.+.|++.+-.=-=| | ++ ...+....+.|+.||+. ..-.|.+-... .++
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmD----G-~F---vpn~tfg~~~i~~i~~~~~~~~~dvHLMv--------~~p--- 70 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMD----N-HY---VPNLTFGAPICKALRDYGITAPIDVHLMV--------KPV--- 70 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccc----C-cc---cCccccCHHHHHHHHHhCCCCCEEEEecc--------CCH---
Confidence 56788899999999999888742111 1 11 12455678899999975 23234443222 222
Q ss_pred CCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhc
Q 008423 139 ASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG 207 (566)
Q Consensus 139 ~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~ 207 (566)
..++..=++||||.|.-+.=- .+.+.++++.+|+.|+. .-.-+-|-+....+..+..
T Consensus 71 ---------~~~i~~~~~~gad~i~~H~Ea-~~~~~~~l~~ik~~g~k--~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 71 ---------DRIIPDFAKAGASMITFHVEA-SEHVDRTLQLIKEHGCQ--AGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred ---------HHHHHHHHHhCCCEEEEcccC-cccHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHH
Confidence 345556667999988766542 34577899999999965 2333446677776665543
No 463
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=24.19 E-value=7.3e+02 Score=24.83 Aligned_cols=222 Identities=12% Similarity=0.095 Sum_probs=110.7
Q ss_pred hhccCCCcCEEEecCCCCCCCchhHHHHHHHHHh----hcCCceeEEe-----ccccCCHHHHHHHHHHH-HHcCCC--E
Q 008423 11 TAWWPTTRHSATSRWGAGGSTADLTLDIANRMQN----TICVETMMHL-----TCTNMPVEKIDHALQTI-KSNGIQ--N 78 (566)
Q Consensus 11 ~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~----~~Gle~i~HL-----TCrd~n~~~L~~~L~~a-~~~GIr--N 78 (566)
+..+.....+++....=+...++.. +...+++ +-.+-++-.+ ...+.++..+.+.+++. ..+|+. .
T Consensus 24 ~~a~~~Gin~~DtA~~Y~~g~sE~~--lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iD 101 (283)
T PF00248_consen 24 RRALEAGINFFDTADSYGNGRSERI--LGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYID 101 (283)
T ss_dssp HHHHHTT--EEEECGGGGGGTHHHH--HHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEE
T ss_pred HHHHHcCCCeecccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 3444555667777654322223322 4455554 2234444444 44677888888888876 788865 4
Q ss_pred EEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcC
Q 008423 79 VLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAG 158 (566)
Q Consensus 79 ILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAG 158 (566)
++.|-+-... ......+.+-++.+++ -|---.|||..+.. ..++.+ +..+.
T Consensus 102 l~~lH~~~~~--------~~~~~~~~~~l~~l~~-~G~ir~iGvs~~~~------------------~~l~~~--~~~~~ 152 (283)
T PF00248_consen 102 LLLLHWPDPS--------EDALEEVWEALEELKK-EGKIRHIGVSNFSP------------------EQLEAA--LKIGS 152 (283)
T ss_dssp EEEESSSSTT--------SSHHHHHHHHHHHHHH-TTSEEEEEEES--H------------------HHHHHH--HTCTS
T ss_pred cccccccccc--------ccccchhhhhhhhccc-cccccccccccccc------------------cccccc--ccccc
Confidence 4555332211 1112334555555554 34345899986551 445555 33456
Q ss_pred CcEEEeccCCCHH---HHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCH--------HHHHHhCCCCCC
Q 008423 159 ADLIITQLFYDTD---MFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPA--------EITAALEPIKDN 227 (566)
Q Consensus 159 AdFiITQlffD~d---~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~--------~il~~Le~~kdd 227 (566)
.++.+-|+-|+.- .....++.|++.| ++|+ +.-|+..-.-.. ...+....+. ...+.+.
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~g--i~v~-a~~~l~~G~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~----- 222 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFCREHG--IGVI-AYSPLAGGLLTG--KYKSPPPPPSRASLRDAQELADALR----- 222 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHHHHTT---EEE-EESTTGGGCGGT--TTTTTTTSTTTSGSSTHGGGHHHHH-----
T ss_pred ccccccccccccccccccccccccccccc--cccc-cccccccCcccc--ccccCCCcccccccchhhhhhhhhh-----
Confidence 7899999888754 5567788899887 4444 333443210000 0011111110 1222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCchHHHHHHHHHcCC
Q 008423 228 EEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 228 de~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
+..++.|+..+.-.++-++.......-+..+...+.+.+.++.+.+
T Consensus 223 -~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~ 268 (283)
T PF00248_consen 223 -ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDF 268 (283)
T ss_dssp -HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSS
T ss_pred -hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCC
Confidence 1133345444444444455433445567777888888888887754
No 464
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=24.05 E-value=3.4e+02 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC
Q 008423 61 VEKIDHALQTIKSNGIQNVLALRGD 85 (566)
Q Consensus 61 ~~~L~~~L~~a~~~GIrNILaLrGD 85 (566)
.+.....+..+.++|++.++....+
T Consensus 31 ~~~~~~~~~~~~~~Gvttiv~~~~~ 55 (293)
T cd00530 31 VEAAKEELKRFRAHGGRTIVDATPP 55 (293)
T ss_pred HHHHHHHHHHHHHcCCCeEEEcCCc
Confidence 3455666778888999988866544
No 465
>PLN02564 6-phosphofructokinase
Probab=23.98 E-value=1.3e+02 Score=34.31 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=43.8
Q ss_pred eeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCC
Q 008423 50 TMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPE 127 (566)
Q Consensus 50 ~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPE 127 (566)
+++. |||. ....++.++.+++.||+.++++.||-. +..|..|.+++++. | +.|.|.+-|-
T Consensus 154 TiLG-TsR~--~~~~~~iv~~L~~~~Id~LivIGGDGS------------~~gA~~L~e~~~~~-g--~~i~VIGIPK 213 (484)
T PLN02564 154 TILG-TSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT------------QKGASVIYEEIRRR-G--LKVAVAGIPK 213 (484)
T ss_pred ceec-cCCC--cchHHHHHHHHHHhCCCEEEEECCchH------------HHHHHHHHHHHHHc-C--CCceEEEecc
Confidence 3444 5554 346778889999999999999999954 44577887777753 4 5777888774
No 466
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=23.94 E-value=8.3e+02 Score=25.37 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=62.0
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc-----ccCCCcccHHHHHHHHHHHcCCceeEEEEecC
Q 008423 52 MHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFV-----QIQGGFACALDLVKHIRSAYGDYFGITVAGYP 126 (566)
Q Consensus 52 ~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~-----~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyP 126 (566)
..+.|+.++.-.++..-..|...| .|++-+.+-+-. .+-.-+..-..-++.+|+..++...||+-++-
T Consensus 115 ~~i~~TRKt~Pg~r~l~k~Av~~G-------Gg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t 187 (265)
T TIGR00078 115 VRIADTRKTTPGLRLLEKYAVRVG-------GGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVES 187 (265)
T ss_pred eEEEecCCCChhhhHHHHHHHHhc-------CCcccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 567777787777877777776655 455544322100 00000111122356678778766789998731
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 127 EGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 127 EgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
++.+++=.++|||+|.--.++- +.+.+.++.++. .+||
T Consensus 188 ---------------------~eea~~A~~~gaDyI~ld~~~~-e~lk~~v~~~~~---~ipi 225 (265)
T TIGR00078 188 ---------------------LEEAEEAAEAGADIIMLDNMKP-EEIKEAVQLLKG---RVLL 225 (265)
T ss_pred ---------------------HHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHhcC---CCcE
Confidence 2334444679999998888654 666666665542 2565
No 467
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=23.93 E-value=2.2e+02 Score=23.93 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhcC-CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEe
Q 008423 34 LTLDIANRMQNTIC-VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLAL 82 (566)
Q Consensus 34 ~Sl~la~~lq~~~G-le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaL 82 (566)
....++..+++.++ .++ ++..+..+.-.+.+.|..+.+.|+++|+++
T Consensus 18 ~~~~~~~~l~~~~~~~~v--~~a~~~~~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 18 DIEAQAHNLAESLPDFPY--YVGFQSGLGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHHHHHHHCCCCCE--EEEEECCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 45567777776553 333 333333345567788999999999999998
No 468
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=23.88 E-value=6.6e+02 Score=24.18 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=5.3
Q ss_pred CCCEEEEecCC
Q 008423 75 GIQNVLALRGD 85 (566)
Q Consensus 75 GIrNILaLrGD 85 (566)
|-++|+.+.|+
T Consensus 120 g~~~i~~l~~~ 130 (268)
T cd06323 120 GKGKVVELQGI 130 (268)
T ss_pred CCceEEEEeCC
Confidence 44555555443
No 469
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=23.84 E-value=7.8e+02 Score=25.05 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
..+.++++ +++|.||. .++ .+....+++++++.|++.+.
T Consensus 172 ~~l~~i~~---~~~d~vv~-~~~-~~~~~~~~~qa~~~g~~~~~ 210 (327)
T cd06382 172 PLLKEIKN---SGDNRIII-DCS-ADILIELLKQAQQVGMMSEY 210 (327)
T ss_pred HHHHHHHh---cCceEEEE-ECC-HHHHHHHHHHHHHhCccccc
Confidence 44555543 47888886 333 35567889999999987764
No 470
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=23.83 E-value=54 Score=34.59 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=43.0
Q ss_pred HHHHHHHHhc-------CceeecCCCCCCCCCCC-----CC--cccccC-CCceeeeeeeeeeecCh------hhHHHHH
Q 008423 397 NEQLGKINVK-------GFLTINSQPAVNGERSD-----SS--SVGWGG-PGGYVYQKAYLEFFCSP------EKLTALV 455 (566)
Q Consensus 397 ~~~L~~ln~~-------g~~ti~SQP~vng~~S~-----d~--~~GwGp-~~GyvyQKay~Eff~~~------~~~~~l~ 455 (566)
||.|+..+.. |+..+|+|-.+|+-+|+ |+ +..... .+|..|.=.-.-+|-+. ++++.|+
T Consensus 21 qE~Lis~~~~~~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~LE~a~~y~~~~~~~vd~~~~~LL 100 (281)
T PF09265_consen 21 QERLISKPESGAFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYCLEVAKYYDPPTAPDVDQEVEALL 100 (281)
T ss_dssp HHHHHTCBTTTS-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEEEEEEEEE-TTTHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEEEEEEEecCCccchhhHHHHHHHH
Confidence 5778887666 99999999999999877 33 334555 68889987666667665 2456666
Q ss_pred Hhhc
Q 008423 456 DKSK 459 (566)
Q Consensus 456 ~~~~ 459 (566)
..|.
T Consensus 101 ~~L~ 104 (281)
T PF09265_consen 101 AGLS 104 (281)
T ss_dssp TT--
T ss_pred hhcC
Confidence 6664
No 471
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=23.81 E-value=6.1e+02 Score=27.97 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHHHH-HcCCcEEEe---------------ccCCCHHHHHHHHHHHHHcCCCCcEEeeeccc
Q 008423 146 SDLLYLKKKV-DAGADLIIT---------------QLFYDTDMFLKFVNDCRQIGITCPIVPGIMPI 196 (566)
Q Consensus 146 ~dl~~Lk~Kv-dAGAdFiIT---------------QlffD~d~f~~f~~~~R~~Gi~vPIIpGImPI 196 (566)
.+...+.+++ ++|||+|-- |+..|++.+.+.++.+++. .++||++=|.|=
T Consensus 127 ~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLsPn 192 (385)
T PLN02495 127 DAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMTPN 192 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeCCC
Confidence 4566555555 468998752 4457899999998999876 479999888873
No 472
>PLN02801 beta-amylase
Probab=23.64 E-value=1.9e+02 Score=33.11 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCcEEEecc-----------CCCHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCC
Q 008423 145 QSDLLYLKKKVDAGADLIITQL-----------FYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKI 213 (566)
Q Consensus 145 ~~dl~~Lk~KvdAGAdFiITQl-----------ffD~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~V 213 (566)
+..|.+|| .+|+|-|+.-. -||=..|.++.+.+|++|+++-+|...--+.. ..-.-|.|.+
T Consensus 40 ~~~L~~LK---~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG-----NVGD~~~IpL 111 (517)
T PLN02801 40 EKQLKRLK---EAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGG-----NVGDAVNIPI 111 (517)
T ss_pred HHHHHHHH---HcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCC-----CCCCcccccC
Confidence 34555555 68999876543 38889999999999999988654443322221 1224567889
Q ss_pred CHHHHHHhCC
Q 008423 214 PAEITAALEP 223 (566)
Q Consensus 214 P~~il~~Le~ 223 (566)
|+++++..+.
T Consensus 112 P~WV~~~g~~ 121 (517)
T PLN02801 112 PQWVRDVGDS 121 (517)
T ss_pred CHHHHHhhcc
Confidence 9999986554
No 473
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=23.60 E-value=6.7e+02 Score=24.14 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=59.3
Q ss_pred EEeccccCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCC
Q 008423 52 MHLTCTNMPVEKIDHALQTIKSNG-IQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHP 130 (566)
Q Consensus 52 ~HLTCrd~n~~~L~~~L~~a~~~G-IrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHp 130 (566)
.|++|.+.+...++..-+.+..+| ..|+-.+.||.... +.. ..+.|..-+.+- +.
T Consensus 66 ~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-----------------l~~----~~~~~D~V~~~~--~~- 121 (198)
T PRK00377 66 GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-----------------LFT----INEKFDRIFIGG--GS- 121 (198)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-----------------Hhh----cCCCCCEEEECC--Cc-
Confidence 589999999998887777778888 47788888886421 000 001122222210 11
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCC
Q 008423 131 DTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGIT 186 (566)
Q Consensus 131 e~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~ 186 (566)
. .+..-++.+.+.++.|..+++ -+.+.+.+.+..+.+++.|..
T Consensus 122 --~---------~~~~~l~~~~~~LkpgG~lv~--~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 122 --E---------KLKEIISASWEIIKKGGRIVI--DAILLETVNNALSALENIGFN 164 (198)
T ss_pred --c---------cHHHHHHHHHHHcCCCcEEEE--EeecHHHHHHHHHHHHHcCCC
Confidence 0 122456666777777887775 223566667777777777764
No 474
>PRK08445 hypothetical protein; Provisional
Probab=23.59 E-value=9.4e+02 Score=25.87 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEec----cCCCHHHHHHHHHHHHHcCCCCcEEe----------eecccCCHHHHHHHhc--
Q 008423 144 YQSDLLYLKKKVDAGADLIITQ----LFYDTDMFLKFVNDCRQIGITCPIVP----------GIMPINNYKGFLRMTG-- 207 (566)
Q Consensus 144 ~~~dl~~Lk~KvdAGAdFiITQ----lffD~d~f~~f~~~~R~~Gi~vPIIp----------GImPI~s~~~~~r~~~-- 207 (566)
+++-++.+++-.+.|+.-|++| +.++.+.+.+.++.+++....+-++. -+.-+.....+.++.+
T Consensus 75 ~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAG 154 (348)
T PRK08445 75 FEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKG 154 (348)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3344555666667899988888 45688899999999998765555432 1111112344444422
Q ss_pred ---cC--CCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeE--EEEcCC
Q 008423 208 ---FC--KTK-IPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTL--HLYTLN 260 (566)
Q Consensus 208 ---l~--Gv~-VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~Gi--HfyTlN 260 (566)
+. |+. ..+++.+.+-+-+-. .+--.+.++.+.+.|++-- =+|-++
T Consensus 155 l~~~~g~glE~~~d~v~~~~~pk~~t--------~~~~i~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 155 LSSIPGAGAEILSDRVRDIIAPKKLD--------SDRWLEVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred CCCCCCCceeeCCHHHHHhhCCCCCC--------HHHHHHHHHHHHHcCCeeeeEEEecCC
Confidence 22 233 344566666432222 2223688888888883322 255555
No 475
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=23.40 E-value=2.1e+02 Score=31.20 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcc---------------ccCCC
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFV---------------QIQGG 99 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~---------------~~~~~ 99 (566)
+.++|..+.+ .|.=.++| |+++.++..+.+...+.--..++++=.|-.+..-+.-. .+.|-
T Consensus 58 ~~~mA~~la~-~g~~~~iH---k~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGh 133 (343)
T TIGR01305 58 TFEMAAALSQ-HSIFTAIH---KHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGY 133 (343)
T ss_pred CHHHHHHHHH-CCCeEEEe---eCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCc
Q ss_pred cccHHHHHHHHHHHcCCceeEEE-EecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEE
Q 008423 100 FACALDLVKHIRSAYGDYFGITV-AGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLII 163 (566)
Q Consensus 100 F~~A~dLVk~Ir~~~gd~F~IGV-AgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI 163 (566)
=.+.++.|+.||+.+++.+-|+. ..-||+- ++=++||||.|.
T Consensus 134 s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a----------------------~~Li~aGAD~ik 176 (343)
T TIGR01305 134 SEHFVEFVKLVREAFPEHTIMAGNVVTGEMV----------------------EELILSGADIVK 176 (343)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecccCHHHH----------------------HHHHHcCCCEEE
No 476
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.39 E-value=1.5e+02 Score=28.40 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 37 DIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 37 ~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
+++..+. ++|++.-.++..-.++.+.+.+.+..+...|++=|.+..|-.
T Consensus 18 ~a~~~L~-~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~ 66 (150)
T PF00731_consen 18 EAAKTLE-EFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMS 66 (150)
T ss_dssp HHHHHHH-HTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS
T ss_pred HHHHHHH-HcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCc
Confidence 4444444 599999999999999999999999999889999888888763
No 477
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=23.39 E-value=1.1e+03 Score=26.76 Aligned_cols=150 Identities=14% Similarity=0.041 Sum_probs=89.4
Q ss_pred hhhccCCCcCEEEecCCCCCC-----Cc---hhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Q 008423 10 WTAWWPTTRHSATSRWGAGGS-----TA---DLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLA 81 (566)
Q Consensus 10 ~~~~~~~~p~fVsVTwgagG~-----~~---~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILa 81 (566)
..++|.+..|||-=.-+ -++ .. ....+....++++.|-.++--.+.+.-+..++.+....+.++|..-+|+
T Consensus 182 ~y~~~~GGvD~IKDDE~-l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv 260 (468)
T PRK04208 182 VYEALRGGLDFTKDDEN-LNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMI 260 (468)
T ss_pred HHHHHhcCCceeeCCCC-CCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34677777788632222 221 11 2344666677778897776655656666788888888899999876663
Q ss_pred ecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCC-CCCCCCCCccchHHHHHHHHHHHHcCCc
Q 008423 82 LRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDT-IGPDGVASNESYQSDLLYLKKKVDAGAD 160 (566)
Q Consensus 82 LrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~-~~~~~~~~~~~~~~dl~~Lk~KvdAGAd 160 (566)
= + +....+.++.+++... ++.+-+-++|.+|.-. .++. ..-+. .-+.+|-+= ||||
T Consensus 261 ~---~-------------~~~G~~~l~~l~~~~~-~~~l~IhaHrA~~ga~~r~~~---~Gis~-~vl~Kl~RL--aGaD 317 (468)
T PRK04208 261 D---V-------------VTAGWTALQSLREWCR-DNGLALHAHRAMHAAFTRNPN---HGISF-RVLAKLLRL--IGVD 317 (468)
T ss_pred e---c-------------cccccHHHHHHHHhhh-cCCcEEEecCCcccccccCcC---CCCCH-HHHHHHHHH--cCCC
Confidence 1 1 1122333566665322 2466677888888432 1111 01112 124445443 7999
Q ss_pred EEEec-----cCCCHHHHHHHHHHHHHc
Q 008423 161 LIITQ-----LFYDTDMFLKFVNDCRQI 183 (566)
Q Consensus 161 FiITQ-----lffD~d~f~~f~~~~R~~ 183 (566)
.+++= +-++.+...++.+.||+-
T Consensus 318 ~ih~~t~~Gk~~~~~~~~~~~~~~l~~~ 345 (468)
T PRK04208 318 HLHTGTVVGKLEGDRAEVLGYYDILRED 345 (468)
T ss_pred ccccCCccCCccCCHHHHHHHHHHHhhh
Confidence 88764 446888889999988863
No 478
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=23.35 E-value=8.7e+02 Score=25.41 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCceeEEEEecCCCCCCC--CC-----CCCCCCccchHHHHHHHHHHHHcCCcEEE--------eccCC
Q 008423 104 LDLVKHIRSAYGDYFGITVAGYPEGHPDT--IG-----PDGVASNESYQSDLLYLKKKVDAGADLII--------TQLFY 168 (566)
Q Consensus 104 ~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~--~~-----~~~~~~~~~~~~dl~~Lk~KvdAGAdFiI--------TQlff 168 (566)
-+||+.+.+.||. -||-|+--+-..++. .. .-|.. .-.. .-++.-++=.+.||--|. ||--|
T Consensus 110 p~lI~~~a~~FGs-QciVvaIDakr~~~g~~~~~~v~~~gGr~-~t~~-d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~Gy 186 (256)
T COG0107 110 PELITEAADRFGS-QCIVVAIDAKRVPDGENGWYEVFTHGGRE-DTGL-DAVEWAKEVEELGAGEILLTSMDRDGTKAGY 186 (256)
T ss_pred hHHHHHHHHHhCC-ceEEEEEEeeeccCCCCCcEEEEecCCCc-CCCc-CHHHHHHHHHHcCCceEEEeeecccccccCc
Confidence 5688888888985 577777555443210 00 00000 0000 235555666677885443 78999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCC
Q 008423 169 DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKD 226 (566)
Q Consensus 169 D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kd 226 (566)
|.+......+.| ++|||+. -|+.-|+++.+.+...+-
T Consensus 187 Dl~l~~~v~~~v-----~iPvIAS----------------GGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 187 DLELTRAVREAV-----NIPVIAS----------------GGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CHHHHHHHHHhC-----CCCEEec----------------CCCCcHHHHHHHHHhcCc
Confidence 999987665554 5998864 578889999999977653
No 479
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=23.32 E-value=4.7e+02 Score=28.67 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCcEEEec----cCCCHHH------HHHHHHHHHHcCCCCcEE-eeecccCCHHHHHHHhccCCCCCCH
Q 008423 147 DLLYLKKKVDAGADLIITQ----LFYDTDM------FLKFVNDCRQIGITCPIV-PGIMPINNYKGFLRMTGFCKTKIPA 215 (566)
Q Consensus 147 dl~~Lk~KvdAGAdFiITQ----lffD~d~------f~~f~~~~R~~Gi~vPII-pGImPI~s~~~~~r~~~l~Gv~VP~ 215 (566)
..+++++=.++|.+.|==. .-|+... ..++.+.+++.|+.++.+ +++++ . ..+. -.
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~-~--~~~~----~g------ 100 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFS-H--PVFK----DG------ 100 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccC-C--cccc----CC------
Confidence 3455555557899987533 1133322 467888899999876542 22221 0 0000 00
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCC----------chHHHHHHHHHcCC
Q 008423 216 EITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLN----------MEKSALAILLNLGL 274 (566)
Q Consensus 216 ~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN----------~e~~v~~IL~~l~l 274 (566)
..-+.++++++..++.+.+.++-..+.|++-+|+.+=- .++......+.|..
T Consensus 101 -------~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~ 162 (382)
T TIGR02631 101 -------GFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNL 162 (382)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHH
Confidence 11123456777777777666666666788888775421 23455555555544
No 480
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=23.27 E-value=7e+02 Score=24.44 Aligned_cols=94 Identities=9% Similarity=0.090 Sum_probs=52.3
Q ss_pred cchhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCC-ceeEEecccc----------CCHHHHHHHHHHHHHcCC
Q 008423 8 SGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICV-ETMMHLTCTN----------MPVEKIDHALQTIKSNGI 76 (566)
Q Consensus 8 ~~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gl-e~i~HLTCrd----------~n~~~L~~~L~~a~~~GI 76 (566)
+...+++....++|-|...+. ...++...+.+.+|. .+++-+.+++ .+.....+.+..+.+.|+
T Consensus 86 e~~~~~~~~Gad~vvigs~~l-----~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga 160 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAAV-----KNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGV 160 (234)
T ss_pred HHHHHHHHcCCCEEEECchHH-----hChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCC
Confidence 445566666677776544333 234445555556765 5555555442 123344566777788999
Q ss_pred CEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 77 QNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 77 rNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
..+++.. -.+.+. ..+. -.++++.+++...
T Consensus 161 ~~iii~~--~~~~g~-----~~g~--~~~~i~~i~~~~~ 190 (234)
T cd04732 161 KAIIYTD--ISRDGT-----LSGP--NFELYKELAAATG 190 (234)
T ss_pred CEEEEEe--ecCCCc-----cCCC--CHHHHHHHHHhcC
Confidence 9888752 222221 1222 2677888876543
No 481
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=23.23 E-value=5.4e+02 Score=25.45 Aligned_cols=104 Identities=13% Similarity=0.215 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCC
Q 008423 60 PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVA 139 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~ 139 (566)
+.+.+.+.++.+.+.|++-+.+..|--+.... .+..+..++..++ . ..+.++|..+.
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~-------~~~~~~~~i~~~~--~-----~~~i~~p~~~~--------- 75 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKGIARAYGR-------EYAGDIPLIVKLN--G-----STSLSPKDDND--------- 75 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChHHHHhccc-------ccCCCCcEEEEEC--C-----CCCCCCCCCCc---------
Confidence 56678888999999999999887554433211 1100111110010 0 01334442111
Q ss_pred CccchHHHHHHHHHHHHcCCcEEEeccCCCHH-------HHHHHHHHHHHcCCCCcEEeee
Q 008423 140 SNESYQSDLLYLKKKVDAGADLIITQLFYDTD-------MFLKFVNDCRQIGITCPIVPGI 193 (566)
Q Consensus 140 ~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~d-------~f~~f~~~~R~~Gi~vPIIpGI 193 (566)
......+++=+++||+.+-.|+.+-.. .+.+..+.|++.| +|+|.-.
T Consensus 76 -----~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g--~~~iie~ 129 (235)
T cd00958 76 -----KVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG--LPLIAWM 129 (235)
T ss_pred -----hhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEE
Confidence 133444666678999999888877432 3445555566555 6776633
No 482
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.11 E-value=5.4e+02 Score=27.88 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=33.8
Q ss_pred ccCCHHHHHHHHHHHHH----cCCCEEEEec-CCCCCCCCCccccCCCcccHHHHHHHHHHHcC
Q 008423 57 TNMPVEKIDHALQTIKS----NGIQNVLALR-GDPPHGQDKFVQIQGGFACALDLVKHIRSAYG 115 (566)
Q Consensus 57 rd~n~~~L~~~L~~a~~----~GIrNILaLr-GDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~g 115 (566)
|+++..+|-+.+..+.. .++.||...+ |.|-. .++...++++.+++..|
T Consensus 125 rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~----------N~d~v~~~l~~l~~~~g 178 (348)
T PRK14467 125 RNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA----------NYENVRKAVQIMTSPWG 178 (348)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc----------CHHHHHHHHHHHcChhc
Confidence 67888888777766643 3699999998 88753 24456677777765444
No 483
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.04 E-value=5.9e+02 Score=28.67 Aligned_cols=142 Identities=17% Similarity=0.257 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCceeEEeccccC--CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHH
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNM--PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRS 112 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~--n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~ 112 (566)
.+.++.=|-+.+-+..+|+..-+-+ +.++|-...+.+.+.|++-|.++.=|-..-|.. ..++-..=.+|++.|-+
T Consensus 147 ~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D---~~~~~~~l~~Ll~~l~~ 223 (437)
T COG0621 147 FVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKD---LGGGKPNLADLLRELSK 223 (437)
T ss_pred EEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhcccc---CCCCccCHHHHHHHHhc
Confidence 3444555555567777888776544 568999999999999999999876665443321 11111124677777766
Q ss_pred HcCCceeEEEE-ecCCCCCCCCCCCCCCCccchHHHHHHHHH----------HHHcCCcEEEecc--CCCHHHHHHHHHH
Q 008423 113 AYGDYFGITVA-GYPEGHPDTIGPDGVASNESYQSDLLYLKK----------KVDAGADLIITQL--FYDTDMFLKFVND 179 (566)
Q Consensus 113 ~~gd~F~IGVA-gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~----------KvdAGAdFiITQl--ffD~d~f~~f~~~ 179 (566)
--| .+.|=+. .||..+.+ ..++.+++ =++.|-|-|..-| =|..+.|.+.+++
T Consensus 224 I~G-~~riR~~~~~P~~~~d--------------~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k 288 (437)
T COG0621 224 IPG-IERIRFGSSHPLEFTD--------------DLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEK 288 (437)
T ss_pred CCC-ceEEEEecCCchhcCH--------------HHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHH
Confidence 333 3444433 56644322 11111111 1222333333333 2788899999999
Q ss_pred HHHcC----CCCcEEeeec
Q 008423 180 CRQIG----ITCPIVPGIM 194 (566)
Q Consensus 180 ~R~~G----i~vPIIpGIm 194 (566)
+|++- |+.-||.|..
T Consensus 289 ~R~~~Pd~~i~tDiIVGFP 307 (437)
T COG0621 289 LRAARPDIAISTDIIVGFP 307 (437)
T ss_pred HHHhCCCceEeccEEEECC
Confidence 98753 3455788863
No 484
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=22.95 E-value=4.9e+02 Score=28.01 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHH--------HHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCC
Q 008423 62 EKIDH--------ALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTI 133 (566)
Q Consensus 62 ~~L~~--------~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~ 133 (566)
+.+++ .+..|.+.||.++++ ||-.. +-+.-..+.+-++.+|+++|-....|+..-+
T Consensus 167 ~i~~~~~~~~~~gll~~a~~~GI~dili---DplVl------pvs~~~~tl~aI~~iK~~~G~pt~~GlSNiS------- 230 (308)
T PRK00979 167 KMLEEGGKGQDKGMLPLAEEAGIERPLV---DTAVT------PLPGSGAAIRAIFAVKAKFGYPVGCAPHNAP------- 230 (308)
T ss_pred HHHHhccccchHHHHHHHHHcCCCcEEe---ccCCC------cCccHHHHHHHHHHHHHHcCCCeEEEEeCCc-------
Q ss_pred CCCCCCCccchHHHHHHHHHH-----------------HHcCCcEEE
Q 008423 134 GPDGVASNESYQSDLLYLKKK-----------------VDAGADLII 163 (566)
Q Consensus 134 ~~~~~~~~~~~~~dl~~Lk~K-----------------vdAGAdFiI 163 (566)
--...||++ +-+|+||+.
T Consensus 231 ------------~~w~~lk~~~~~~~~~~~d~~~~~~~~~~g~Df~l 265 (308)
T PRK00979 231 ------------SAWDWLREFKGKEAFAVCDIGANLVARILGADFLL 265 (308)
T ss_pred ------------hHHHHHHHhcccccccccchHHHHHHHHhcCCeEE
No 485
>PRK06852 aldolase; Validated
Probab=22.83 E-value=7.5e+02 Score=26.49 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=30.6
Q ss_pred HHcCCcEEEeccC-----CCHHHHHHHHHHHHHcCCCCcE-EeeecccCCHHHHHHH
Q 008423 155 VDAGADLIITQLF-----YDTDMFLKFVNDCRQIGITCPI-VPGIMPINNYKGFLRM 205 (566)
Q Consensus 155 vdAGAdFiITQlf-----fD~d~f~~f~~~~R~~Gi~vPI-IpGImPI~s~~~~~r~ 205 (566)
.+.|||+|=|-+. .|.+.|.+-++.| | .+|| +.|=--. +-+.+.++
T Consensus 198 aELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g-~vpVviaGG~k~-~~~e~L~~ 249 (304)
T PRK06852 198 ACLGADFVKVNYPKKEGANPAELFKEAVLAA---G-RTKVVCAGGSST-DPEEFLKQ 249 (304)
T ss_pred HHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---C-CCcEEEeCCCCC-CHHHHHHH
Confidence 3569999999999 8899988866654 2 3674 5554333 54444443
No 486
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.62 E-value=7.3e+02 Score=24.27 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCc--eeEEEEecCCCCCCCCCC
Q 008423 58 NMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDY--FGITVAGYPEGHPDTIGP 135 (566)
Q Consensus 58 d~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~--F~IGVAgyPEgHpe~~~~ 135 (566)
+.+.+++++.+..+.+.|++.++ -....++..++..... .--.+++||.|-....
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~---------------------v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~-- 69 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVC---------------------VNPCFVPLAREALKGSGVKVCTVIGFPLGATTTE-- 69 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE---------------------EcHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHH--
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCcEEEeccCCCH------HHHHHHHHHHHHc--CCCCcEEeeecccC--CHHHHHHH
Q 008423 136 DGVASNESYQSDLLYLKKKVDAGADLIITQLFYDT------DMFLKFVNDCRQI--GITCPIVPGIMPIN--NYKGFLRM 205 (566)
Q Consensus 136 ~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD~------d~f~~f~~~~R~~--Gi~vPIIpGImPI~--s~~~~~r~ 205 (566)
.-+...++=++.|||-+-..+.+.. +.+.+.+..+++. |+.+.+|...-++. ......|.
T Consensus 70 ----------~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ri 139 (203)
T cd00959 70 ----------VKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEI 139 (203)
T ss_pred ----------HHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHH
Q ss_pred hccCCCCC
Q 008423 206 TGFCKTKI 213 (566)
Q Consensus 206 ~~l~Gv~V 213 (566)
+.-.|+++
T Consensus 140 a~e~GaD~ 147 (203)
T cd00959 140 AIEAGADF 147 (203)
T ss_pred HHHhCCCE
No 487
>KOG1228 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=86 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.543 Sum_probs=25.0
Q ss_pred Cce-eEEeccccCCHHH-HHHHHHHH--HHcCCC------EEEEecCC
Q 008423 48 VET-MMHLTCTNMPVEK-IDHALQTI--KSNGIQ------NVLALRGD 85 (566)
Q Consensus 48 le~-i~HLTCrd~n~~~-L~~~L~~a--~~~GIr------NILaLrGD 85 (566)
+|| |+|.-||+.-..+ |.+.-..+ .+.||. +|+|+|-.
T Consensus 116 fEP~IlhVqcrdlq~Aq~L~~~Ais~GFReSGIt~~~~~k~ivAIR~s 163 (256)
T KOG1228|consen 116 FEPFILHVQCRDLQDAQILHSMAISCGFRESGITVGKRGKTIVAIRSS 163 (256)
T ss_pred ccceEEEEehhhhhhHHHHHHHHHhcCccccccccccCCcEEEEEEee
Confidence 444 8899999995544 44433333 677776 78888754
No 488
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.58 E-value=4.9e+02 Score=25.82 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccc
Q 008423 64 IDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNES 143 (566)
Q Consensus 64 L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~ 143 (566)
..+.++.+.+.|++.+.+. |.... ..+...-.++|+.|.+.++..+.||...
T Consensus 34 ~~e~a~~~~~~G~~~l~i~--dl~~~-------~~~~~~~~~~i~~i~~~~~~~l~v~GGi------------------- 85 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLV--DLDGA-------FEGERKNAEAIEKIIEAVGVPVQLGGGI------------------- 85 (241)
T ss_pred HHHHHHHHHHcCCCEEEEE--echhh-------hcCCcccHHHHHHHHHHcCCcEEEcCCc-------------------
Confidence 4455666678899887544 33221 1223334667777777776545553221
Q ss_pred hHHHHHHHHHHHHcCCcEE-EeccCC-CHHHHHHHHHHHHHcCCCCcEEeeec
Q 008423 144 YQSDLLYLKKKVDAGADLI-ITQLFY-DTDMFLKFVNDCRQIGITCPIVPGIM 194 (566)
Q Consensus 144 ~~~dl~~Lk~KvdAGAdFi-ITQlff-D~d~f~~f~~~~R~~Gi~vPIIpGIm 194 (566)
.+.+.++.-+++||+.+ +-+... |++.+.++.+.+ |.+ .|+++|-
T Consensus 86 --~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~---g~~-~i~~sid 132 (241)
T PRK13585 86 --RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEF---GSE-RVMVSLD 132 (241)
T ss_pred --CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHh---CCC-cEEEEEE
Confidence 12444556667999964 444443 555555554443 322 2566653
No 489
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=22.53 E-value=1.1e+03 Score=26.72 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=62.1
Q ss_pred CCchhHHHHHHHHHhhcCCceeEEecc---------ccCCHHHHHHHHHH-HHHcCCCE-EEEecCCCCCCCCCcccc--
Q 008423 30 STADLTLDIANRMQNTICVETMMHLTC---------TNMPVEKIDHALQT-IKSNGIQN-VLALRGDPPHGQDKFVQI-- 96 (566)
Q Consensus 30 ~~~~~Sl~la~~lq~~~Gle~i~HLTC---------rd~n~~~L~~~L~~-a~~~GIrN-ILaLrGDpp~~~~~~~~~-- 96 (566)
+.+..-++.|-..-++.+.+++.--|| ++|+...+.+.+.+ |.+.|+.+ -++|.||.-.. ..|+.-
T Consensus 24 sahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGP-n~Wq~lpa 102 (426)
T PRK15458 24 SAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGP-NRWQNLPA 102 (426)
T ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCC-ccccCCCH
Confidence 445556676666666789999999999 68899999999876 58999997 88899998643 235421
Q ss_pred CCCcccHHHHHH-HHHHHcCC---ceeEEEEecCC
Q 008423 97 QGGFACALDLVK-HIRSAYGD---YFGITVAGYPE 127 (566)
Q Consensus 97 ~~~F~~A~dLVk-~Ir~~~gd---~F~IGVAgyPE 127 (566)
..-...|.+||+ +++..|.- +=+.+||+-|.
T Consensus 103 ~eAM~~A~~li~ayV~AGF~kIHLD~Sm~cagdp~ 137 (426)
T PRK15458 103 AQAMANADDLIKSYVAAGFKKIHLDCSMSCADDPI 137 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEecCCCCCCCCCC
Confidence 112334555553 35443320 12445666663
No 490
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=22.48 E-value=59 Score=32.15 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=30.7
Q ss_pred cCCcEEEeccCCCHHHHHHHHHHHHHcCCC-CcEEeeeccc
Q 008423 157 AGADLIITQLFYDTDMFLKFVNDCRQIGIT-CPIVPGIMPI 196 (566)
Q Consensus 157 AGAdFiITQlffD~d~f~~f~~~~R~~Gi~-vPIIpGImPI 196 (566)
.|---|.-=|..|..++.+=++.+.+.+.+ +-|+|||||=
T Consensus 94 ~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLPGv~Pk 134 (181)
T COG1954 94 LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLPGVMPK 134 (181)
T ss_pred cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcCcccHH
Confidence 344444444556999999999999988877 6899999973
No 491
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.47 E-value=2.4e+02 Score=32.62 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 35 TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 35 Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
.++-|..+.+.+|++.-+++.+-.++.+.+.+.+..|.+.|++=|.+..|-.
T Consensus 425 ~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~ 476 (577)
T PLN02948 425 TMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGA 476 (577)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCcc
Confidence 4444455555699999999999999999999999999999999888777654
No 492
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=22.43 E-value=6.1e+02 Score=24.18 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHH-cCCCEEEEecCCCCC
Q 008423 34 LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKS-NGIQNVLALRGDPPH 88 (566)
Q Consensus 34 ~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~-~GIrNILaLrGDpp~ 88 (566)
++..+++.+++ .|.++..+-.+ .-+.+.|.+.|.++.+ .+++ +++.+|--..
T Consensus 23 n~~~l~~~L~~-~G~~v~~~~iv-~Dd~~~i~~~l~~~~~~~~~D-lVIttGGtg~ 75 (163)
T TIGR02667 23 SGQYLVERLTE-AGHRLADRAIV-KDDIYQIRAQVSAWIADPDVQ-VILITGGTGF 75 (163)
T ss_pred cHHHHHHHHHH-CCCeEEEEEEc-CCCHHHHHHHHHHHHhcCCCC-EEEECCCcCC
Confidence 35566666664 89987665454 5588899999998865 4554 6666666543
No 493
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=22.26 E-value=4.6e+02 Score=23.93 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHH-----HHHHHHHHcCCCCcEEeeecccC
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFL-----KFVNDCRQIGITCPIVPGIMPIN 197 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~-----~f~~~~R~~Gi~vPIIpGImPI~ 197 (566)
...+..+...+.|++++.+-..+...... +.+..+++. .++|+++.++-..
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 68 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAIND 68 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCC
Confidence 34556667777899998887655222111 123333332 3578888876433
No 494
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.15 E-value=1.3e+02 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcEEe
Q 008423 146 SDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVP 191 (566)
Q Consensus 146 ~dl~~Lk~KvdAGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPIIp 191 (566)
.+++.+++=++.|+|.||..+.-... +..++++|+++| +||+.
T Consensus 43 ~q~~~i~~~i~~~~d~Iiv~~~~~~~-~~~~l~~~~~~g--Ipvv~ 85 (257)
T PF13407_consen 43 EQIEQIEQAISQGVDGIIVSPVDPDS-LAPFLEKAKAAG--IPVVT 85 (257)
T ss_dssp HHHHHHHHHHHTTESEEEEESSSTTT-THHHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHHHHhcCCEEEecCCCHHH-HHHHHHHHhhcC--ceEEE
Confidence 67888888889999999988776643 447889999998 57665
No 495
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.13 E-value=9.1e+02 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHcCCcEEEec----cCCCHHHHHHHHHHHHHcCCCCcE
Q 008423 144 YQSDLLYLKKKVDAGADLIITQ----LFYDTDMFLKFVNDCRQIGITCPI 189 (566)
Q Consensus 144 ~~~dl~~Lk~KvdAGAdFiITQ----lffD~d~f~~f~~~~R~~Gi~vPI 189 (566)
+++-++.+++-.+.|+.-|.=| +.++.+.+.++++.+++.+.++.+
T Consensus 38 ~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~ 87 (309)
T TIGR00423 38 LEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHI 87 (309)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceE
Confidence 3344555555556788643333 335888899999999988655543
No 496
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=22.10 E-value=3e+02 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=27.7
Q ss_pred cCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008423 46 ICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 86 (566)
Q Consensus 46 ~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDp 86 (566)
.|+++..|. +.|.... ..+.|+.+.++|++.||-=.|.+
T Consensus 113 ~~~~~tFHR-AfD~~~d-~~~al~~L~~lG~~rVLTSGg~~ 151 (201)
T PF03932_consen 113 GGMPVTFHR-AFDEVPD-PEEALEQLIELGFDRVLTSGGAP 151 (201)
T ss_dssp TTSEEEE-G-GGGGSST-HHHHHHHHHHHT-SEEEESTTSS
T ss_pred CCCeEEEeC-cHHHhCC-HHHHHHHHHhcCCCEEECCCCCC
Confidence 489999996 5566544 55778888899999999655553
No 497
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=22.10 E-value=1.5e+02 Score=31.50 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE
Q 008423 60 PVEKIDHALQTIKSNGIQNVLA 81 (566)
Q Consensus 60 n~~~L~~~L~~a~~~GIrNILa 81 (566)
+++++++.|..++++|+..|++
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~ 38 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFV 38 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 6777888888888888777764
No 498
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=22.06 E-value=3.6e+02 Score=26.75 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCCceeEEecccc--C--C-------HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHH
Q 008423 36 LDIANRMQNTICVETMMHLTCTN--M--P-------VEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACAL 104 (566)
Q Consensus 36 l~la~~lq~~~Gle~i~HLTCrd--~--n-------~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~ 104 (566)
-++...++ ..|++.+.|....+ . + .+.+...+..|.++|+..+....|-.+..... ...........
T Consensus 48 ~~l~~~l~-~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~-~~~~~~~~~~~ 125 (274)
T COG1082 48 AELKELLA-DYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDP-DSPEEARERWA 125 (274)
T ss_pred HHHHHHHH-HcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCC-CCCcccHHHHH
Confidence 44444444 58999998877776 2 2 34455577788999999998888765543221 00011111123
Q ss_pred HHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHH--cCCcEEEeccCCCH
Q 008423 105 DLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVD--AGADLIITQLFYDT 170 (566)
Q Consensus 105 dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd--AGAdFiITQlffD~ 170 (566)
+.++.+...... ..|+++.-|..|+...- ......++.+.+... .|..+=+..+++.-
T Consensus 126 ~~l~~l~~~a~~-~~i~l~~e~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~lD~~H~~~~~ 185 (274)
T COG1082 126 EALEELAEIAEE-LGIGLALENHHHPGNVV-------ETGADALDLLREVDSPNVGLLLDTGHAFFAG 185 (274)
T ss_pred HHHHHHHHHHHH-hCCceEEeecCCcccee-------ecCHHHHHHHHhcCCCceEEEEecCchhhcc
Confidence 322222211111 14444444444543210 011145666666654 45566667777763
No 499
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=22.04 E-value=6.8e+02 Score=26.32 Aligned_cols=177 Identities=21% Similarity=0.210 Sum_probs=89.0
Q ss_pred CceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHH-H---HHHHHHHcCCceeEEEE
Q 008423 48 VETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALD-L---VKHIRSAYGDYFGITVA 123 (566)
Q Consensus 48 le~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~d-L---Vk~Ir~~~gd~F~IGVA 123 (566)
-+++.-+||.|.+-..+ +.++||+=|| -||.-..--.. .+....-.+| + .+.+|+..+..| =++
T Consensus 15 g~ki~~lTaYD~~~A~~------~d~agvD~iL--VGDSlgmv~~G--~~sT~~vtld~mi~h~~aV~Rga~~~~--vv~ 82 (261)
T PF02548_consen 15 GEKIVMLTAYDYPSARI------ADEAGVDIIL--VGDSLGMVVLG--YDSTLPVTLDEMIYHTKAVRRGAPNAF--VVA 82 (261)
T ss_dssp T--EEEEE--SHHHHHH------HHHTT-SEEE--E-TTHHHHTT----SSSTT--HHHHHHHHHHHHHH-TSSE--EEE
T ss_pred CCcEEEEecccHHHHHH------HHHcCCCEEE--eCCcHHHheeC--CCCCcCcCHHHHHHHHHHHHhcCCCce--EEe
Confidence 48899999999855544 3458998776 69974210000 0112222222 2 345666555444 366
Q ss_pred ecCCCCCCCCCCCCCCCccchHHHHHHHHHHHH-cCCcEEEeccCCCHHHHHHHHHHHHHcCCCCcE--EeeecccCCHH
Q 008423 124 GYPEGHPDTIGPDGVASNESYQSDLLYLKKKVD-AGADLIITQLFYDTDMFLKFVNDCRQIGITCPI--VPGIMPINNYK 200 (566)
Q Consensus 124 gyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~Kvd-AGAdFiITQlffD~d~f~~f~~~~R~~Gi~vPI--IpGImPI~s~~ 200 (566)
--|.+..+. +.++-++.-.+=++ +|||-+=..=..+. ...++.+-++| +|| ..|++|=. ..
T Consensus 83 DmPf~sy~~----------s~e~av~nA~rl~ke~GadaVKlEGg~~~---~~~i~~l~~~G--IPV~gHiGLtPQ~-~~ 146 (261)
T PF02548_consen 83 DMPFGSYQA----------SPEQAVRNAGRLMKEAGADAVKLEGGAEI---AETIKALVDAG--IPVMGHIGLTPQS-VH 146 (261)
T ss_dssp E--TTSSTS----------SHHHHHHHHHHHHHTTT-SEEEEEBSGGG---HHHHHHHHHTT----EEEEEES-GGG-HH
T ss_pred cCCcccccC----------CHHHHHHHHHHHHHhcCCCEEEeccchhH---HHHHHHHHHCC--CcEEEEecCchhh-ee
Confidence 778875432 23355666666666 99999877765533 34466677778 677 57887643 21
Q ss_pred HHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCchHHHHHHHHHcCC
Q 008423 201 GFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 274 (566)
Q Consensus 201 ~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~Gv~GiHfyTlN~e~~v~~IL~~l~l 274 (566)
. +-|.++ ..++ .++ .+...+.++.|-+.|+-.+-+ .+=-++..+.|-+++.+
T Consensus 147 ~------~GGyr~---------qGk~-~~~-----a~~l~~~A~ale~AGaf~ivl-E~vp~~la~~It~~l~I 198 (261)
T PF02548_consen 147 Q------LGGYRV---------QGKT-AEE-----AEKLLEDAKALEEAGAFAIVL-ECVPAELAKAITEALSI 198 (261)
T ss_dssp H------HTSS-----------CSTS-HHH-----HHHHHHHHHHHHHHT-SEEEE-ESBBHHHHHHHHHHSSS
T ss_pred c------cCCceE---------EecC-HHH-----HHHHHHHHHHHHHcCccEEee-ecCHHHHHHHHHHhCCC
Confidence 1 122221 1122 221 233456667777788877743 45566777788888865
No 500
>PRK14072 6-phosphofructokinase; Provisional
Probab=22.01 E-value=2e+02 Score=31.88 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=46.1
Q ss_pred HHHHhhcCCceeEEeccccC------CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccccCCCcccHHHHHHHHHHH
Q 008423 40 NRMQNTICVETMMHLTCTNM------PVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSA 113 (566)
Q Consensus 40 ~~lq~~~Gle~i~HLTCrd~------n~~~L~~~L~~a~~~GIrNILaLrGDpp~~~~~~~~~~~~F~~A~dLVk~Ir~~ 113 (566)
..+.+ .|-. +++ |||.. +.+..+..++.++++||+.++++.||-+ +..|..|-+++++.
T Consensus 65 ~~i~~-~gGt-~Lg-ssR~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS------------~~~a~~L~e~~~~~ 129 (416)
T PRK14072 65 AALAH-TPSG-ALG-SCRYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDS------------MDTALKVSQLAKKM 129 (416)
T ss_pred HHHhc-CCCe-Eec-cCCCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHH------------HHHHHHHHHHHHHh
Confidence 33443 3433 555 66643 4678999999999999999999999954 44567777766543
Q ss_pred cCCceeEEEEecC
Q 008423 114 YGDYFGITVAGYP 126 (566)
Q Consensus 114 ~gd~F~IGVAgyP 126 (566)
| ..|-|.+-|
T Consensus 130 -g--~~i~vIgIP 139 (416)
T PRK14072 130 -G--YPIRCIGIP 139 (416)
T ss_pred -C--CCceEEEee
Confidence 3 235555555
Done!