BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008424
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/551 (45%), Positives = 350/551 (63%), Gaps = 17/551 (3%)
Query: 28 SELQTSRIDHALPLPSVLKNPFK---IVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPN 84
S + R + LP++LK F +V G + A + + + F N +G P +
Sbjct: 4 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLP-IISFTE 62
Query: 85 GADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKY 144
G ++ + L IG++LSGG APGGHNVISG++D ++ S L+GF+GGP G+++
Sbjct: 63 GESSLSFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDK 122
Query: 145 VELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNA 204
+ELT + I YRN GGFD++ SGR KIET E + +A A SNTNA
Sbjct: 123 IELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNA 182
Query: 205 CLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTG 264
+LAE+F+ V+G PKTID DL+ + SFGFD+A KIY+E+IGN+ DA ST
Sbjct: 183 AILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 242
Query: 265 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELG 324
KY+HFV+LMGR+ASH+ LECAL+THPNI I+ EEV AKK+TL + D +V +I KR+ G
Sbjct: 243 KYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNG 302
Query: 325 YNYGVILIPEGLIDFIPEVQQLIAELNEIL-AHEVVDEGGQWKK-------KLTKQSLQL 376
N+GV+++PEGLI+FIPEV+ L+ EL +I +E +G +K KL+ +
Sbjct: 303 DNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGV 362
Query: 377 FEFLPQAIQEQL---MLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQ 433
+ LP IQ +L +LERDPHGN V+++ TEK+ I+M+++ L + K+ G KG F
Sbjct: 363 YLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPV 422
Query: 434 SHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493
HFFGYEGR P+NFD+ YCY+LGY A L+ +G TG +S + NL +W G L
Sbjct: 423 DHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPL 482
Query: 494 TALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTS-- 551
T LM++E R+G+ KPVIKKA+V+L+G PFK+FV RD+WALNN Y+ PGP+Q+ G +
Sbjct: 483 TMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIV 542
Query: 552 GDVNHTLLLEL 562
++ TL LEL
Sbjct: 543 DEITETLKLEL 553
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 101/265 (38%), Gaps = 39/265 (14%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
+IG++ SGG APG + + + A G ++G R G AG++ L S +
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHL 60
Query: 156 RNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEH-FRSK 214
N G + + + E E S A L H F S
Sbjct: 61 INVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNS- 119
Query: 215 NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH---FVR 271
+G P TID D+ + A+ G+DTAC + I + R T +H V
Sbjct: 120 ------IGLPGTIDNDIPYTD--ATIGYDTACMTAMDAIDKI----RDTASSHHRVFIVN 167
Query: 272 LMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKR----AELGYNY 327
+MGR I + + + +I E Y V+ I R E G ++
Sbjct: 168 VMGRNCGDIAMRVGVACGADAIVIPER------------PYDVEEIANRLKQAQESGKDH 215
Query: 328 GVILIPEGLIDFIPEVQQLIAELNE 352
G++++ EG++ Q +AEL +
Sbjct: 216 GLVVVAEGVM----TADQFMAELKK 236
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 30/257 (11%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
+IGV+ SGG +PG + I + + G +YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSV--VRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 156 RNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKN 215
++GG + + + +T E K+ E S A L EH
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFP-- 118
Query: 216 LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275
+G P TID D+ + + GFDTA + I + A S + Y + +MGR
Sbjct: 119 ----CVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171
Query: 276 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYG----VIL 331
A I L L +I E DY ++ + R + G+ G +I+
Sbjct: 172 HAGDIALWSGLAGGAETILIPE------------ADYDMNDVIARLKRGHERGKKHSIII 219
Query: 332 IPEGL---IDFIPEVQQ 345
+ EG+ +DF ++Q+
Sbjct: 220 VAEGVGSGVDFGRQIQE 236
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 30/257 (11%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
+IGV+ SGG +PG + I + + G +YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSV--VRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 156 RNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKN 215
++GG + + + +T E K+ E S A L EH
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP-- 118
Query: 216 LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275
+G P TID D+ + + GFDTA + I + A S + Y + +MGR
Sbjct: 119 ----CVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171
Query: 276 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYG----VIL 331
A I L L +I E DY ++ + R + G+ G +I+
Sbjct: 172 HAGDIALWSGLAGGAETILIPE------------ADYDMNDVIARLKRGHERGKKHSIII 219
Query: 332 IPEGL---IDFIPEVQQ 345
+ EG+ +DF ++Q+
Sbjct: 220 VAEGVGSGVDFGRQIQE 236
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 20/192 (10%)
Query: 97 IGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMK---CKYVELT 148
IG+V GG PG ++VI +GI Y R + GFR G G+ K +EL
Sbjct: 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKR-----VIGFRFGYWGLSKKGSQTAIELH 154
Query: 149 SNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLA 208
+ + GG ++ S R P+ K+ +T + A +++
Sbjct: 155 RGRVTNIHHYGG-TILGSSRG----PQDPKEMVDTLERLGVNILFTVGGDGTQRGALVIS 209
Query: 209 EHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH 268
+ + + + V G PKTID DL +FGF TA + + I +A S
Sbjct: 210 QEAKRRGVDISVFGVPKTIDNDLSFSH--RTFGFQTAVEKAVQAIRAAYAEAVSANYGVG 267
Query: 269 FVRLMGRAASHI 280
V+LMGR + I
Sbjct: 268 VVKLMGRDSGFI 279
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 30/257 (11%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
+IGV+ SGG +PG + I + + G +YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSV--VRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 156 RNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSKN 215
++GG + + + +T E K+ E S A L EH
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFP-- 118
Query: 216 LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275
+G P TID D+ + + GFDTA + I + A S + + + +MGR
Sbjct: 119 ----CVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTW-VIEVMGR 171
Query: 276 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYG----VIL 331
A I L L +I E DY ++ + R + G+ G +I+
Sbjct: 172 HAGDIALYSGLAGGAETILIPE------------ADYDMNDVIARLKRGHERGKKHSIII 219
Query: 332 IPEGL---IDFIPEVQQ 345
+ EG+ +DF ++Q+
Sbjct: 220 VAEGVGSGVDFGRQIQE 236
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 37/250 (14%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN 150
+IGV+ SGG +PG + + IY ++ +YG G AG++ K +L
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIYHDVE-------VYGIYNGYAGLISGKIEKLELG 55
Query: 151 YIYPYRNQGGFDMICSGRDKIETPEQFKQATETAXXXXXXXXXXXXXXXSNTNACLLAEH 210
+ ++GG + + + +T E ++ S A L EH
Sbjct: 56 SVGDIIHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH 115
Query: 211 FRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFV 270
+G P TID D+ + + GFDTA + I + A S + Y +
Sbjct: 116 GFP------CVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTY-VI 166
Query: 271 RLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYG-- 328
+MGR A I L L +I E DY + I R + G+ G
Sbjct: 167 EVMGRHAGDIALWAGLAGGAESILIPE------------ADYDMHEIIARLKRGHERGKK 214
Query: 329 --VILIPEGL 336
+I++ EG+
Sbjct: 215 HSIIIVAEGV 224
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
KIGV+ SGG APG + I G+ +G + G G G+ + + V+L +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVR--SALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 156 RNQGGFDMICSGRDKIETPEQFKQ-ATETAXXXXXXXXXXXXXXXSNTNACLLAEHFRSK 214
N+GG + S R E + A E S A L E
Sbjct: 62 INRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE----- 115
Query: 215 NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMG 274
+ +G P TID D+K + + GF TA E I + + D S+ + V +MG
Sbjct: 116 -MGFPCIGLPGTIDNDIKGTDY--TIGFFTALSTVVEAI-DRLRDTSSSHQRISVVEVMG 171
Query: 275 RAASHITLECALQTHPNITIIGEEVAAKKQTLKN 308
R +TL A+ ++ EV ++ L N
Sbjct: 172 RYCGDLTLAAAIAGGCEFVVV-PEVEFSREDLVN 204
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIY 153
KIGV G PGG ++++G+YD +D L G + G G+ + E+ N IY
Sbjct: 67 KIGVCF-GSAGPGGTHLMNGLYDAREDHVPVLALIG-QFGTTGMNMDTFQEMNENPIY 122
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIY 153
KIGV G PGG ++++G+YD +D L G + G G+ + E+ N IY
Sbjct: 75 KIGVCF-GSAGPGGTHLMNGLYDAREDHVPVLALIG-QFGTTGMNMDTFQEMNENPIY 130
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIY 153
KIGV G PGG ++++G+YD +D L G + G G+ + E+ N IY
Sbjct: 75 KIGVCF-GSAGPGGTHLMNGLYDAREDHVPVLALIG-QFGTTGMNMDTFQEMNENPIY 130
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIY 153
KIGV G PGG ++++G+YD +D L G + G G+ + E+ N IY
Sbjct: 67 KIGVCF-GSAGPGGTHLMNGLYDAREDHVPVLALIG-QFGTTGMNMDTFQEMNENPIY 122
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIY 153
KIGV G PGG ++++G+YD +D L G + G G+ + E+ N IY
Sbjct: 75 KIGVCF-GSAGPGGTHLMNGLYDAREDHVPVLALIG-QFGTTGMNMDTFQEMNENPIY 130
>pdb|3O4L|D Chain D, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 195
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 127 SVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGG 160
S+ R G + ++ C Y + +S Y+Y Y+ + G
Sbjct: 2 SLFLSVREGDSSVINCTYTDSSSTYLYWYKQEPG 35
>pdb|2YPL|D Chain D, Structural Features Underlying T-cell Receptor Sensitivity
To Concealed Mhc Class I Micropolymorphisms
Length = 199
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 127 SVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGG 160
S+ R G + ++ C Y + +S Y+Y Y+ + G
Sbjct: 6 SLFLSVREGDSSVINCTYTDSSSTYLYWYKQEPG 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,529,460
Number of Sequences: 62578
Number of extensions: 768203
Number of successful extensions: 1702
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 23
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)