Query 008424
Match_columns 566
No_of_seqs 253 out of 1374
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 11:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02251 pyrophosphate-depende 100.0 2E-156 5E-161 1278.6 55.2 548 18-565 20-567 (568)
2 cd00765 Pyrophosphate_PFK Phos 100.0 9E-151 2E-155 1232.4 52.6 535 26-561 2-550 (550)
3 PLN03028 pyrophosphate--fructo 100.0 1E-149 3E-154 1233.3 53.6 538 25-564 2-554 (610)
4 PRK07085 diphosphate--fructose 100.0 1E-148 3E-153 1219.6 53.5 536 26-564 2-550 (555)
5 TIGR02477 PFKA_PPi diphosphate 100.0 1E-147 3E-152 1209.7 52.1 532 30-562 1-539 (539)
6 PTZ00468 phosphofructokinase f 100.0 8E-140 2E-144 1205.3 53.0 534 21-560 25-563 (1328)
7 PTZ00287 6-phosphofructokinase 100.0 4E-136 8E-141 1182.1 43.2 538 22-564 759-1347(1419)
8 PTZ00287 6-phosphofructokinase 100.0 6E-135 1E-139 1172.1 51.5 533 22-563 101-638 (1419)
9 PTZ00468 phosphofructokinase f 100.0 2E-123 4E-128 1069.6 44.1 533 22-564 581-1229(1328)
10 cd00363 PFK Phosphofructokinas 100.0 1.1E-84 2.4E-89 682.3 35.9 336 95-526 1-337 (338)
11 PRK14072 6-phosphofructokinase 100.0 4.8E-81 1E-85 669.5 37.1 342 94-501 3-360 (416)
12 COG0205 PfkA 6-phosphofructoki 100.0 2.1E-81 4.5E-86 653.5 30.1 343 94-526 2-345 (347)
13 TIGR02483 PFK_mixed phosphofru 100.0 1.9E-77 4.1E-82 623.6 34.6 320 96-496 1-323 (324)
14 PTZ00286 6-phospho-1-fructokin 100.0 6.6E-77 1.4E-81 641.2 38.6 338 76-496 78-416 (459)
15 PLN02564 6-phosphofructokinase 100.0 6.7E-77 1.5E-81 640.2 38.3 355 93-528 86-442 (484)
16 PLN02884 6-phosphofructokinase 100.0 7.6E-77 1.6E-81 633.7 37.2 355 76-526 44-402 (411)
17 PRK03202 6-phosphofructokinase 100.0 2.5E-76 5.3E-81 613.9 34.5 300 95-499 2-303 (320)
18 PRK06830 diphosphate--fructose 100.0 8.8E-76 1.9E-80 629.4 38.0 349 94-527 80-432 (443)
19 TIGR02482 PFKA_ATP 6-phosphofr 100.0 1.2E-75 2.6E-80 603.9 34.2 299 96-496 1-300 (301)
20 PRK06555 pyrophosphate--fructo 100.0 2.4E-75 5.2E-80 617.7 37.3 351 94-526 3-393 (403)
21 PRK14071 6-phosphofructokinase 100.0 4E-75 8.7E-80 613.8 36.7 340 94-528 4-354 (360)
22 cd00763 Bacterial_PFK Phosphof 100.0 5.6E-75 1.2E-79 603.1 34.3 301 95-500 1-302 (317)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.2E-71 2.7E-76 630.5 36.4 352 95-537 1-378 (745)
24 PF00365 PFK: Phosphofructokin 100.0 4.3E-71 9.3E-76 566.6 31.5 281 95-467 1-282 (282)
25 cd00764 Eukaryotic_PFK Phospho 100.0 1.5E-70 3.2E-75 619.2 36.1 353 93-536 2-380 (762)
26 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.3E-69 9.2E-74 609.8 36.1 329 91-511 386-732 (745)
27 cd00764 Eukaryotic_PFK Phospho 100.0 7.1E-65 1.5E-69 573.1 34.2 328 91-510 386-731 (762)
28 KOG2440 Pyrophosphate-dependen 100.0 7.6E-58 1.6E-62 501.5 4.5 535 23-561 42-614 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 2.7E-34 5.9E-39 316.1 20.8 355 99-551 1-384 (666)
30 COG3199 Predicted inorganic po 88.5 0.63 1.4E-05 49.5 4.9 72 172-257 84-155 (355)
31 PRK00561 ppnK inorganic polyph 87.8 0.91 2E-05 46.8 5.5 54 177-247 17-75 (259)
32 PRK04761 ppnK inorganic polyph 87.7 1.3 2.8E-05 45.4 6.5 54 175-245 6-65 (246)
33 PRK04885 ppnK inorganic polyph 87.7 1.9 4.2E-05 44.5 7.8 68 175-257 15-91 (265)
34 cd01537 PBP1_Repressors_Sugar_ 85.0 37 0.00079 32.7 15.0 103 96-245 1-103 (264)
35 PF00465 Fe-ADH: Iron-containi 84.6 2.4 5.3E-05 45.3 7.0 57 173-229 63-133 (366)
36 PF01513 NAD_kinase: ATP-NAD k 84.2 1 2.2E-05 46.8 3.7 39 182-225 70-108 (285)
37 PRK14077 pnk inorganic polypho 83.5 2.5 5.5E-05 44.2 6.4 53 188-257 64-118 (287)
38 cd08180 PDD 1,3-propanediol de 82.2 4 8.6E-05 43.2 7.4 54 173-226 63-118 (332)
39 PRK01911 ppnK inorganic polyph 81.5 3.6 7.8E-05 43.2 6.6 55 188-259 64-120 (292)
40 PRK14075 pnk inorganic polypho 81.5 3 6.5E-05 42.9 5.9 50 188-257 41-92 (256)
41 PLN02929 NADH kinase 81.0 2.1 4.5E-05 45.1 4.6 54 188-247 64-123 (301)
42 PLN02935 Bifunctional NADH kin 80.7 3.3 7.2E-05 46.5 6.3 53 188-257 262-316 (508)
43 PRK02649 ppnK inorganic polyph 80.3 3.6 7.7E-05 43.5 6.1 53 188-257 68-122 (305)
44 PRK04539 ppnK inorganic polyph 80.0 3.8 8.1E-05 43.1 6.1 53 188-257 68-122 (296)
45 cd08189 Fe-ADH5 Iron-containin 79.3 5.8 0.00012 42.8 7.5 56 173-228 68-137 (374)
46 cd08551 Fe-ADH iron-containing 79.1 5.8 0.00012 42.5 7.4 58 173-230 65-135 (370)
47 cd08177 MAR Maleylacetate redu 79.0 4.9 0.00011 42.6 6.8 53 173-230 62-114 (337)
48 PRK03372 ppnK inorganic polyph 78.4 3.7 7.9E-05 43.4 5.5 53 188-257 72-126 (306)
49 PRK03378 ppnK inorganic polyph 77.7 6 0.00013 41.5 6.8 43 188-247 63-105 (292)
50 cd08172 GlyDH-like1 Glycerol d 77.5 6 0.00013 42.1 6.9 53 172-229 60-112 (347)
51 TIGR01918 various_sel_PB selen 77.0 12 0.00027 41.1 9.1 157 61-223 183-372 (431)
52 PRK15454 ethanol dehydrogenase 76.5 7.4 0.00016 42.4 7.4 38 173-210 91-128 (395)
53 cd06321 PBP1_ABC_sugar_binding 76.3 83 0.0018 31.0 14.8 88 96-223 1-88 (271)
54 cd08193 HVD 5-hydroxyvalerate 76.0 8 0.00017 41.7 7.4 55 173-227 68-135 (376)
55 cd08173 Gro1PDH Sn-glycerol-1- 75.9 6.9 0.00015 41.5 6.8 54 173-231 63-116 (339)
56 PRK00843 egsA NAD(P)-dependent 75.7 6.8 0.00015 41.9 6.7 53 173-230 72-124 (350)
57 cd07766 DHQ_Fe-ADH Dehydroquin 75.5 7.5 0.00016 40.9 6.9 55 173-230 63-117 (332)
58 cd08186 Fe-ADH8 Iron-containin 75.3 8.6 0.00019 41.6 7.5 39 173-211 69-107 (383)
59 cd08179 NADPH_BDH NADPH-depend 74.9 8.5 0.00018 41.5 7.3 37 173-209 66-102 (375)
60 TIGR02638 lactal_redase lactal 74.9 8.9 0.00019 41.4 7.4 54 173-226 71-139 (379)
61 cd08176 LPO Lactadehyde:propan 74.5 9.2 0.0002 41.2 7.4 55 173-227 70-137 (377)
62 PRK09860 putative alcohol dehy 74.5 9.7 0.00021 41.3 7.6 55 173-227 73-140 (383)
63 cd08182 HEPD Hydroxyethylphosp 74.2 9.2 0.0002 41.0 7.3 55 173-227 62-133 (367)
64 cd08170 GlyDH Glycerol dehydro 74.1 6.9 0.00015 41.7 6.3 50 173-227 62-111 (351)
65 cd08185 Fe-ADH1 Iron-containin 74.0 8.6 0.00019 41.5 7.1 55 173-227 68-140 (380)
66 cd08181 PPD-like 1,3-propanedi 73.3 11 0.00023 40.5 7.5 55 173-227 68-134 (357)
67 cd08194 Fe-ADH6 Iron-containin 73.3 10 0.00022 40.9 7.4 54 173-226 65-131 (375)
68 PRK03501 ppnK inorganic polyph 73.2 8.1 0.00018 40.0 6.3 68 175-257 17-95 (264)
69 PRK02231 ppnK inorganic polyph 72.8 4.3 9.2E-05 42.2 4.2 43 188-247 42-84 (272)
70 cd08178 AAD_C C-terminal alcoh 72.8 10 0.00022 41.2 7.3 36 173-208 63-98 (398)
71 PRK03708 ppnK inorganic polyph 72.3 3.1 6.8E-05 43.2 3.1 43 187-247 56-98 (277)
72 PRK01231 ppnK inorganic polyph 71.8 8.8 0.00019 40.3 6.3 54 188-258 62-117 (295)
73 cd08184 Fe-ADH3 Iron-containin 71.5 13 0.00027 40.0 7.5 55 173-227 63-133 (347)
74 PRK15138 aldehyde reductase; P 71.3 12 0.00026 40.7 7.4 38 173-210 70-107 (387)
75 TIGR01357 aroB 3-dehydroquinat 71.0 10 0.00023 40.2 6.8 52 173-227 63-117 (344)
76 cd08171 GlyDH-like2 Glycerol d 70.9 9.9 0.00021 40.5 6.6 50 173-227 63-112 (345)
77 COG3155 ElbB Uncharacterized p 70.5 12 0.00027 36.0 6.3 115 95-225 2-138 (217)
78 cd08183 Fe-ADH2 Iron-containin 70.0 13 0.00027 40.1 7.2 38 173-210 60-97 (374)
79 TIGR01917 gly_red_sel_B glycin 69.2 22 0.00048 39.2 8.8 48 176-223 324-372 (431)
80 PF07905 PucR: Purine cataboli 69.2 14 0.00031 33.4 6.3 74 149-225 33-107 (123)
81 PRK09423 gldA glycerol dehydro 68.5 12 0.00025 40.3 6.5 49 173-226 69-117 (366)
82 cd08195 DHQS Dehydroquinate sy 68.4 13 0.00028 39.6 6.8 52 173-227 67-121 (345)
83 cd08550 GlyDH-like Glycerol_de 67.9 13 0.00027 39.7 6.6 52 173-229 62-113 (349)
84 PRK10624 L-1,2-propanediol oxi 67.7 16 0.00035 39.4 7.5 54 173-226 72-140 (382)
85 cd08192 Fe-ADH7 Iron-containin 66.2 18 0.00039 38.9 7.4 39 173-211 66-104 (370)
86 PRK00002 aroB 3-dehydroquinate 65.6 15 0.00034 39.3 6.7 52 173-227 74-128 (358)
87 PF13407 Peripla_BP_4: Peripla 65.1 53 0.0012 32.2 10.1 172 97-318 1-179 (257)
88 PRK11914 diacylglycerol kinase 64.9 18 0.0004 37.6 7.0 60 175-244 51-110 (306)
89 TIGR03405 Phn_Fe-ADH phosphona 64.7 20 0.00043 38.4 7.3 38 173-210 63-102 (355)
90 COG1844 Uncharacterized protei 64.7 43 0.00092 30.6 8.1 64 191-273 2-65 (125)
91 cd08191 HHD 6-hydroxyhexanoate 64.6 21 0.00045 38.7 7.5 53 174-226 65-130 (386)
92 PRK13849 putative crown gall t 64.5 50 0.0011 33.3 9.8 126 196-331 11-147 (231)
93 COG1454 EutG Alcohol dehydroge 63.8 20 0.00043 39.1 7.1 39 173-211 71-109 (377)
94 cd08187 BDH Butanol dehydrogen 63.3 21 0.00045 38.6 7.3 55 173-227 71-138 (382)
95 cd08190 HOT Hydroxyacid-oxoaci 62.6 21 0.00046 39.1 7.3 36 173-208 65-100 (414)
96 cd08199 EEVS 2-epi-5-epi-valio 62.5 21 0.00046 38.4 7.1 52 173-227 69-124 (354)
97 cd08188 Fe-ADH4 Iron-containin 62.4 24 0.00051 38.1 7.5 55 173-227 70-137 (377)
98 cd08196 DHQS-like1 Dehydroquin 62.1 22 0.00048 38.2 7.1 67 173-247 58-127 (346)
99 cd08549 G1PDH_related Glycerol 62.0 20 0.00043 38.1 6.7 52 173-230 66-117 (332)
100 PRK02155 ppnK NAD(+)/NADH kina 61.4 9.7 0.00021 39.9 4.1 53 188-257 63-117 (291)
101 cd08197 DOIS 2-deoxy-scyllo-in 61.1 29 0.00062 37.4 7.8 52 173-227 66-120 (355)
102 PRK13054 lipid kinase; Reviewe 59.5 19 0.00041 37.5 5.9 59 178-243 46-105 (300)
103 cd08175 G1PDH Glycerol-1-phosp 59.4 19 0.00042 38.3 6.1 49 172-226 65-113 (348)
104 TIGR03822 AblA_like_2 lysine-2 59.0 1.6E+02 0.0034 31.2 12.8 166 98-276 139-310 (321)
105 PF00781 DAGK_cat: Diacylglyce 58.8 18 0.00039 32.6 5.0 52 189-248 55-108 (130)
106 cd01391 Periplasmic_Binding_Pr 58.4 1.6E+02 0.0036 27.6 12.1 120 96-256 1-122 (269)
107 PLN02727 NAD kinase 58.0 11 0.00024 45.3 4.2 53 188-257 743-797 (986)
108 PF02401 LYTB: LytB protein; 57.5 24 0.00052 36.9 6.2 49 175-225 197-245 (281)
109 cd08169 DHQ-like Dehydroquinat 56.6 31 0.00068 36.9 7.1 52 173-227 65-119 (344)
110 PLN02834 3-dehydroquinate synt 56.4 30 0.00064 38.4 7.0 52 173-227 145-199 (433)
111 PRK13337 putative lipid kinase 56.2 17 0.00037 37.8 5.0 58 178-243 47-104 (304)
112 PF02844 GARS_N: Phosphoribosy 55.0 15 0.00032 32.7 3.6 93 95-224 1-93 (100)
113 PRK14076 pnk inorganic polypho 54.5 14 0.00029 42.4 4.1 52 188-256 348-401 (569)
114 PF02601 Exonuc_VII_L: Exonucl 52.6 87 0.0019 32.8 9.6 101 91-228 11-119 (319)
115 COG0371 GldA Glycerol dehydrog 52.3 31 0.00067 37.4 6.1 55 173-232 69-123 (360)
116 PRK06203 aroB 3-dehydroquinate 51.9 34 0.00074 37.3 6.5 50 174-226 94-146 (389)
117 COG4981 Enoyl reductase domain 51.7 1.3E+02 0.0028 34.6 10.8 85 187-295 122-217 (717)
118 PRK07360 FO synthase subunit 2 51.7 1.7E+02 0.0037 31.6 11.8 189 92-301 106-331 (371)
119 PRK13951 bifunctional shikimat 51.6 35 0.00075 38.5 6.7 113 127-248 172-289 (488)
120 COG0061 nadF NAD kinase [Coenz 51.4 36 0.00078 35.4 6.4 57 187-262 54-110 (281)
121 TIGR00147 lipid kinase, YegS/R 50.4 19 0.00041 37.1 4.1 44 184-232 53-98 (293)
122 PRK13055 putative lipid kinase 49.7 27 0.00059 37.0 5.3 57 178-243 49-106 (334)
123 cd06305 PBP1_methylthioribose_ 49.6 2.6E+02 0.0057 27.3 14.2 86 96-223 1-86 (273)
124 cd07995 TPK Thiamine pyrophosp 49.3 79 0.0017 31.1 8.2 102 99-210 2-117 (208)
125 PRK01185 ppnK inorganic polyph 49.1 18 0.0004 37.5 3.8 51 188-258 52-104 (271)
126 cd06306 PBP1_TorT-like TorT-li 48.6 1.6E+02 0.0035 29.2 10.4 87 96-223 1-87 (268)
127 cd08198 DHQS-like2 Dehydroquin 48.5 36 0.00079 37.0 6.1 49 175-226 83-134 (369)
128 PRK13057 putative lipid kinase 48.2 44 0.00095 34.5 6.4 60 174-244 37-96 (287)
129 TIGR00519 asnASE_I L-asparagin 48.1 92 0.002 33.3 9.0 48 173-222 60-109 (336)
130 PRK13805 bifunctional acetalde 47.9 47 0.001 40.0 7.5 37 173-209 524-560 (862)
131 PRK02645 ppnK inorganic polyph 46.6 23 0.00051 37.3 4.1 54 188-257 57-113 (305)
132 PRK10586 putative oxidoreducta 46.2 44 0.00096 36.1 6.2 56 173-234 72-127 (362)
133 cd06308 PBP1_sensor_kinase_lik 46.1 3E+02 0.0065 27.0 12.2 25 175-199 43-67 (270)
134 PF13685 Fe-ADH_2: Iron-contai 46.0 30 0.00064 35.6 4.7 55 173-232 60-114 (250)
135 PF04009 DUF356: Protein of un 45.9 82 0.0018 28.3 6.7 62 192-272 1-63 (107)
136 cd06281 PBP1_LacI_like_5 Ligan 45.9 2E+02 0.0043 28.3 10.6 90 96-228 1-90 (269)
137 TIGR03702 lip_kinase_YegS lipi 45.7 44 0.00095 34.6 6.0 53 178-232 42-95 (293)
138 PRK13059 putative lipid kinase 45.6 36 0.00079 35.3 5.4 51 186-244 54-104 (295)
139 PRK06186 hypothetical protein; 45.5 24 0.00052 35.9 3.9 59 188-264 53-113 (229)
140 COG1570 XseA Exonuclease VII, 45.4 1.4E+02 0.003 33.3 9.9 95 91-222 132-230 (440)
141 cd06315 PBP1_ABC_sugar_binding 45.1 2E+02 0.0044 28.7 10.6 67 95-199 1-67 (280)
142 TIGR03107 glu_aminopep glutamy 44.4 1.5E+02 0.0032 32.1 9.8 111 111-225 184-312 (350)
143 cd06320 PBP1_allose_binding Pe 44.2 2.4E+02 0.0052 27.7 10.9 90 96-225 1-90 (275)
144 cd06298 PBP1_CcpA_like Ligand- 44.2 87 0.0019 30.6 7.7 69 174-253 41-111 (268)
145 cd08174 G1PDH-like Glycerol-1- 44.2 45 0.00097 35.2 5.9 52 176-232 62-114 (331)
146 cd02042 ParA ParA and ParB of 43.7 2E+02 0.0043 24.3 9.1 64 196-300 9-72 (104)
147 cd01538 PBP1_ABC_xylose_bindin 42.8 1.1E+02 0.0025 30.7 8.4 102 96-243 1-102 (288)
148 PRK05670 anthranilate synthase 42.7 36 0.00078 32.9 4.5 51 185-250 40-90 (189)
149 TIGR01162 purE phosphoribosyla 42.4 52 0.0011 31.6 5.4 50 172-227 37-86 (156)
150 smart00046 DAGKc Diacylglycero 41.6 36 0.00078 30.7 4.0 42 188-232 49-93 (124)
151 TIGR00288 conserved hypothetic 39.8 37 0.0008 32.7 3.9 53 176-231 90-145 (160)
152 TIGR00566 trpG_papA glutamine 39.6 40 0.00087 32.7 4.3 53 183-250 38-90 (188)
153 PF04263 TPK_catalytic: Thiami 39.0 92 0.002 28.5 6.3 91 126-221 16-121 (123)
154 PRK15458 tagatose 6-phosphate 39.0 5.9E+02 0.013 28.4 15.1 128 95-258 15-157 (426)
155 cd06310 PBP1_ABC_sugar_binding 38.6 3.9E+02 0.0084 26.1 13.1 88 96-223 1-88 (273)
156 PRK03359 putative electron tra 38.2 85 0.0018 32.4 6.6 53 179-232 71-128 (256)
157 cd06289 PBP1_MalI_like Ligand- 37.9 1.4E+02 0.0031 29.0 8.1 44 175-223 42-85 (268)
158 PRK00861 putative lipid kinase 37.7 52 0.0011 34.1 5.1 57 178-244 47-103 (300)
159 COG1609 PurR Transcriptional r 37.5 59 0.0013 34.4 5.5 66 93-196 57-122 (333)
160 PRK12767 carbamoyl phosphate s 37.5 4E+02 0.0087 27.5 11.7 43 173-216 54-96 (326)
161 PRK04155 chaperone protein Hch 37.3 2.5E+02 0.0055 29.4 10.0 39 177-215 134-180 (287)
162 PRK05637 anthranilate synthase 37.1 62 0.0013 32.2 5.2 53 183-250 39-91 (208)
163 TIGR02153 gatD_arch glutamyl-t 36.6 1.6E+02 0.0034 32.6 8.7 50 173-223 121-173 (404)
164 PRK10355 xylF D-xylose transpo 36.3 4.2E+02 0.0091 27.7 11.7 93 93-227 24-116 (330)
165 PRK01045 ispH 4-hydroxy-3-meth 36.1 30 0.00064 36.6 2.9 80 175-256 198-279 (298)
166 TIGR01378 thi_PPkinase thiamin 36.1 1.7E+02 0.0037 28.8 8.2 81 127-210 19-113 (203)
167 smart00729 Elp3 Elongator prot 35.9 2.1E+02 0.0045 26.6 8.5 45 173-217 134-182 (216)
168 PLN02821 1-hydroxy-2-methyl-2- 35.9 67 0.0015 35.9 5.7 52 176-228 350-401 (460)
169 PRK13371 4-hydroxy-3-methylbut 35.8 73 0.0016 34.9 5.8 55 175-230 275-329 (387)
170 PF01761 DHQ_synthase: 3-dehyd 35.3 79 0.0017 32.7 5.8 110 172-319 10-122 (260)
171 PRK12361 hypothetical protein; 35.1 48 0.0011 37.6 4.7 51 177-232 286-336 (547)
172 cd06299 PBP1_LacI_like_13 Liga 35.0 1.4E+02 0.003 29.2 7.4 99 96-243 1-99 (265)
173 cd00537 MTHFR Methylenetetrahy 34.9 88 0.0019 32.1 6.2 91 128-224 30-137 (274)
174 PRK05647 purN phosphoribosylgl 34.7 1.5E+02 0.0033 29.3 7.5 18 179-196 71-88 (200)
175 PRK15408 autoinducer 2-binding 34.6 5.7E+02 0.012 26.9 18.4 106 94-244 23-128 (336)
176 PRK11096 ansB L-asparaginase I 34.5 93 0.002 33.6 6.4 41 173-213 83-125 (347)
177 CHL00101 trpG anthranilate syn 34.5 49 0.0011 32.1 4.0 50 184-248 39-88 (190)
178 TIGR00732 dprA DNA protecting 34.3 3.6E+02 0.0078 27.0 10.3 143 73-229 26-193 (220)
179 PLN02958 diacylglycerol kinase 34.1 84 0.0018 35.4 6.2 57 177-233 157-215 (481)
180 PRK12360 4-hydroxy-3-methylbut 33.4 33 0.00072 35.9 2.7 54 175-230 197-250 (281)
181 PRK14021 bifunctional shikimat 33.3 1E+02 0.0022 35.2 6.8 52 173-227 251-305 (542)
182 cd01574 PBP1_LacI Ligand-bindi 33.2 4.6E+02 0.01 25.4 11.2 85 96-223 1-85 (264)
183 cd06167 LabA_like LabA_like pr 33.2 72 0.0015 29.1 4.7 51 178-231 89-139 (149)
184 PRK03910 D-cysteine desulfhydr 33.0 3.9E+02 0.0084 28.2 10.8 51 177-229 52-102 (331)
185 PRK06774 para-aminobenzoate sy 32.7 44 0.00095 32.3 3.3 51 184-249 39-89 (191)
186 PF00731 AIRC: AIR carboxylase 32.7 62 0.0013 30.8 4.2 48 172-225 39-86 (150)
187 PRK07591 threonine synthase; V 32.7 1.4E+02 0.0031 32.8 7.6 114 178-299 126-250 (421)
188 TIGR00215 lpxB lipid-A-disacch 32.6 94 0.002 33.5 6.2 135 100-259 9-145 (385)
189 COG1168 MalY Bifunctional PLP- 31.9 5E+02 0.011 28.6 11.2 175 92-289 79-282 (388)
190 cd06353 PBP1_BmpA_Med_like Per 31.8 5.2E+02 0.011 26.1 11.2 120 93-261 119-238 (258)
191 PRK00286 xseA exodeoxyribonucl 31.8 2E+02 0.0043 31.7 8.6 102 92-230 133-238 (438)
192 KOG3857 Alcohol dehydrogenase, 31.2 1E+02 0.0022 33.5 5.9 39 173-211 112-150 (465)
193 KOG4435 Predicted lipid kinase 31.1 88 0.0019 34.5 5.4 53 173-228 102-154 (535)
194 PF01936 NYN: NYN domain; Int 30.9 38 0.00081 30.5 2.4 50 179-231 86-135 (146)
195 TIGR00640 acid_CoA_mut_C methy 30.9 1.4E+02 0.003 27.5 6.2 36 180-215 45-81 (132)
196 cd06300 PBP1_ABC_sugar_binding 30.5 5.2E+02 0.011 25.2 11.1 94 96-226 1-94 (272)
197 TIGR00216 ispH_lytB (E)-4-hydr 30.4 99 0.0021 32.4 5.6 52 175-228 196-247 (280)
198 cd01391 Periplasmic_Binding_Pr 30.3 2E+02 0.0044 27.0 7.5 47 175-225 168-218 (269)
199 COG0414 PanC Panthothenate syn 30.3 76 0.0016 33.2 4.6 48 248-296 6-54 (285)
200 cd01575 PBP1_GntR Ligand-bindi 30.2 1.1E+02 0.0024 29.7 5.9 83 97-223 2-84 (268)
201 PF00710 Asparaginase: Asparag 30.1 1E+02 0.0022 32.6 5.7 50 173-223 55-106 (313)
202 TIGR00238 KamA family protein. 30.1 2.7E+02 0.0058 29.7 9.0 114 97-216 161-282 (331)
203 TIGR03127 RuMP_HxlB 6-phospho 30.1 3.9E+02 0.0085 25.2 9.4 55 173-231 16-70 (179)
204 PF04405 ScdA_N: Domain of Unk 30.0 56 0.0012 25.9 2.9 28 176-205 11-38 (56)
205 TIGR00676 fadh2 5,10-methylene 30.0 85 0.0019 32.4 5.1 70 153-224 51-134 (272)
206 COG0504 PyrG CTP synthase (UTP 29.7 73 0.0016 36.0 4.7 115 142-277 295-420 (533)
207 PLN02735 carbamoyl-phosphate s 29.4 4.6E+02 0.0099 32.9 11.9 47 177-223 638-692 (1102)
208 cd06307 PBP1_uncharacterized_s 28.0 2.8E+02 0.0061 27.3 8.4 49 175-232 46-94 (275)
209 PRK10014 DNA-binding transcrip 27.8 6.7E+02 0.015 25.6 12.4 88 93-223 63-150 (342)
210 cd06278 PBP1_LacI_like_2 Ligan 27.6 4E+02 0.0086 25.8 9.3 97 97-243 2-98 (266)
211 PRK14462 ribosomal RNA large s 27.5 1.4E+02 0.003 32.4 6.3 125 97-234 162-306 (356)
212 TIGR00215 lpxB lipid-A-disacch 27.3 8E+02 0.017 26.4 12.2 105 191-298 8-123 (385)
213 cd06275 PBP1_PurR Ligand-bindi 27.1 3.8E+02 0.0082 26.1 9.0 66 97-200 2-67 (269)
214 COG2910 Putative NADH-flavin r 27.1 2.9E+02 0.0062 27.7 7.7 95 95-203 1-111 (211)
215 PRK10703 DNA-binding transcrip 27.0 7E+02 0.015 25.5 12.7 70 94-201 59-128 (341)
216 cd02037 MRP-like MRP (Multiple 27.0 5.1E+02 0.011 24.0 10.9 90 196-296 9-98 (169)
217 PLN02335 anthranilate synthase 26.7 82 0.0018 31.5 4.2 50 185-249 59-108 (222)
218 TIGR00237 xseA exodeoxyribonuc 26.6 3.3E+02 0.0072 30.2 9.2 101 92-229 127-232 (432)
219 PRK09864 putative peptidase; P 26.5 3.6E+02 0.0077 29.3 9.2 131 111-256 181-341 (356)
220 cd06283 PBP1_RegR_EndR_KdgR_li 26.5 1.3E+02 0.0029 29.2 5.6 99 97-244 2-100 (267)
221 smart00870 Asparaginase Aspara 26.4 1.6E+02 0.0034 31.3 6.5 50 173-223 58-111 (323)
222 TIGR00520 asnASE_II L-asparagi 26.2 1.5E+02 0.0032 32.1 6.2 49 173-223 86-138 (349)
223 PRK05294 carB carbamoyl phosph 25.6 4.7E+02 0.01 32.5 11.2 47 177-229 618-666 (1066)
224 cd02071 MM_CoA_mut_B12_BD meth 25.5 81 0.0017 28.3 3.5 47 153-200 44-91 (122)
225 COG1979 Uncharacterized oxidor 25.1 94 0.002 33.5 4.3 38 174-211 71-108 (384)
226 PRK12390 1-aminocyclopropane-1 25.0 5E+02 0.011 27.4 10.0 44 177-221 55-98 (337)
227 PLN02735 carbamoyl-phosphate s 24.9 3.2E+02 0.007 34.1 9.5 107 89-224 18-135 (1102)
228 TIGR02810 agaZ_gatZ D-tagatose 24.9 1E+03 0.022 26.6 15.0 139 96-270 12-168 (420)
229 cd00411 Asparaginase Asparagin 24.6 1.4E+02 0.0031 31.6 5.8 48 173-222 61-110 (323)
230 PF13380 CoA_binding_2: CoA bi 24.6 1.6E+02 0.0035 26.3 5.3 44 173-222 64-107 (116)
231 COG1105 FruK Fructose-1-phosph 24.6 5.9E+02 0.013 27.2 10.2 98 120-221 46-163 (310)
232 TIGR02634 xylF D-xylose ABC tr 24.4 7.6E+02 0.016 25.1 13.0 46 174-223 40-85 (302)
233 PF12780 AAA_8: P-loop contain 24.3 3.8E+02 0.0082 27.8 8.6 102 242-358 13-117 (268)
234 COG0763 LpxB Lipid A disacchar 24.2 1.2E+02 0.0026 33.2 5.0 109 95-222 2-116 (381)
235 TIGR01133 murG undecaprenyldip 24.1 96 0.0021 31.9 4.3 37 190-226 2-39 (348)
236 cd01542 PBP1_TreR_like Ligand- 23.8 4.6E+02 0.01 25.3 8.9 83 97-223 2-84 (259)
237 PF02569 Pantoate_ligase: Pant 23.7 1.2E+02 0.0025 31.9 4.7 40 256-295 13-53 (280)
238 cd05005 SIS_PHI Hexulose-6-pho 23.7 5.8E+02 0.013 24.1 9.3 48 173-224 19-66 (179)
239 PF02310 B12-binding: B12 bind 23.7 4.8E+02 0.01 22.5 8.3 108 96-222 2-111 (121)
240 PRK03910 D-cysteine desulfhydr 23.4 1.4E+02 0.003 31.5 5.4 44 180-225 170-218 (331)
241 PRK12815 carB carbamoyl phosph 23.3 3.6E+02 0.0078 33.5 9.6 107 92-223 5-118 (1068)
242 TIGR00423 radical SAM domain p 23.3 8.6E+02 0.019 25.3 11.5 205 99-316 56-295 (309)
243 PRK08007 para-aminobenzoate sy 23.1 90 0.002 30.2 3.6 54 182-250 37-90 (187)
244 smart00481 POLIIIAc DNA polyme 23.1 2.2E+02 0.0048 22.4 5.3 49 177-227 17-65 (67)
245 PHA02728 uncharacterized prote 23.1 43 0.00094 30.9 1.2 15 222-236 43-57 (184)
246 PF13727 CoA_binding_3: CoA-bi 22.9 1E+02 0.0022 28.2 3.8 44 177-220 130-173 (175)
247 COG0685 MetF 5,10-methylenetet 22.8 2E+02 0.0043 30.2 6.3 70 144-215 60-140 (291)
248 cd06273 PBP1_GntR_like_1 This 22.5 4.3E+02 0.0092 25.7 8.4 43 175-223 42-84 (268)
249 cd03822 GT1_ecORF704_like This 22.5 6E+02 0.013 25.4 9.7 112 96-227 1-115 (366)
250 KOG2998 Uncharacterized conser 22.4 3.1E+02 0.0068 29.1 7.4 54 399-468 207-262 (302)
251 TIGR01916 F420_cofE F420-0:gam 22.4 3.1E+02 0.0067 28.3 7.3 57 264-332 88-148 (243)
252 PF00186 DHFR_1: Dihydrofolate 22.1 77 0.0017 30.3 2.8 53 176-236 79-131 (161)
253 PRK15395 methyl-galactoside AB 22.0 9E+02 0.019 25.0 11.1 91 93-224 23-113 (330)
254 cd06292 PBP1_LacI_like_10 Liga 21.9 4.2E+02 0.0091 25.9 8.3 87 96-223 1-89 (273)
255 PF10087 DUF2325: Uncharacteri 21.9 4.3E+02 0.0093 22.5 7.3 14 275-288 82-95 (97)
256 TIGR01769 GGGP geranylgeranylg 21.8 2.5E+02 0.0054 28.1 6.5 53 175-229 11-65 (205)
257 KOG1838 Alpha/beta hydrolase [ 21.7 8.4E+02 0.018 27.1 10.9 128 68-222 87-227 (409)
258 TIGR02826 RNR_activ_nrdG3 anae 21.6 1.9E+02 0.0041 27.2 5.3 45 173-219 47-92 (147)
259 cd01744 GATase1_CPSase Small c 21.4 1.5E+02 0.0032 28.3 4.7 50 185-251 36-88 (178)
260 PRK13293 F420-0--gamma-glutamy 21.3 1.7E+02 0.0038 30.1 5.3 57 264-332 89-149 (245)
261 PLN02327 CTP synthase 21.1 1E+02 0.0022 35.4 3.9 68 176-263 352-421 (557)
262 PF03808 Glyco_tran_WecB: Glyc 21.1 7.2E+02 0.016 23.6 9.5 26 112-137 60-85 (172)
263 TIGR02637 RhaS rhamnose ABC tr 21.0 5.7E+02 0.012 25.7 9.2 87 97-223 1-87 (302)
264 cd01987 USP_OKCHK USP domain i 20.9 2.7E+02 0.0059 24.0 6.0 46 175-224 49-94 (124)
265 PRK07649 para-aminobenzoate/an 20.9 95 0.0021 30.4 3.3 51 184-249 39-89 (195)
266 PRK12342 hypothetical protein; 20.8 2.5E+02 0.0055 28.9 6.5 52 180-232 69-125 (254)
267 cd01672 TMPK Thymidine monopho 20.6 1.3E+02 0.0028 28.1 4.1 34 192-225 3-38 (200)
268 TIGR00176 mobB molybdopterin-g 20.6 2.8E+02 0.0061 26.0 6.3 48 192-246 2-51 (155)
269 TIGR02417 fruct_sucro_rep D-fr 20.5 1.9E+02 0.0041 29.6 5.6 68 94-199 60-127 (327)
270 cd01561 CBS_like CBS_like: Thi 20.5 2.2E+02 0.0047 29.4 6.0 46 178-225 148-195 (291)
271 COG0816 Predicted endonuclease 20.5 1E+02 0.0022 29.1 3.1 30 202-231 40-69 (141)
272 PRK10717 cysteine synthase A; 20.3 2.1E+02 0.0045 30.2 5.9 47 178-226 164-212 (330)
273 COG1237 Metal-dependent hydrol 20.3 3.4E+02 0.0075 28.2 7.2 77 99-212 169-245 (259)
274 PRK06027 purU formyltetrahydro 20.0 3.7E+02 0.0081 28.1 7.6 111 62-196 62-173 (286)
No 1
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=2.4e-156 Score=1278.61 Aligned_cols=548 Identities=89% Similarity=1.387 Sum_probs=533.0
Q ss_pred CccCCcCcCCCHhhhhhhcCCCCCcccccCCceeecCCCCCCCCChhHHHhhCCcccCCCeEEEecCCCCccCCCCCcEE
Q 008424 18 TVKGRVASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKI 97 (566)
Q Consensus 18 ~~~~~~~~~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~I 97 (566)
+...++.+.+|+||++|+.|+|+||++|++++++.+++++.++.++++|+++|||||++|.++|++.++.......++||
T Consensus 20 ~~~~~~~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~I 99 (568)
T PLN02251 20 PASGRDASVYSEVQSSRIDHALPLPSVLKGPFKIVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADALSSDQKLKI 99 (568)
T ss_pred chhhhhhhccCHHHHHHHhCCCCCChhhcCceEEEecCcccccCCHHHHHHhChHhhCCceEEEeeccCccccccccceE
Confidence 45777888899999999999999999999999999999999999999999999999999999999954222333566899
Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHH
Q 008424 98 GVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQF 177 (566)
Q Consensus 98 gIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~ 177 (566)
|||+||||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||||+++++++++
T Consensus 100 GIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~ 179 (568)
T PLN02251 100 GVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQF 179 (568)
T ss_pred EEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVM 257 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~ 257 (566)
++++++|++++||+||+|||||||++|+.|+|||+++|++|+||||||||||||+++|+|+|||||||+++++++|+||+
T Consensus 180 ~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~ 259 (568)
T PLN02251 180 KQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVM 259 (568)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 008424 258 IDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLI 337 (566)
Q Consensus 258 ~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~ 337 (566)
+||.|++|||||||||||+||||||+||||||||+|||||+++.++++|++|+++||+.|++|+.+|++|||||||||++
T Consensus 260 ~da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGli 339 (568)
T PLN02251 260 IDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLI 339 (568)
T ss_pred HHHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHHH
Q 008424 338 DFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETEL 417 (566)
Q Consensus 338 e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~L 417 (566)
+||||++.||+|+|++++++..++++.+.++||+|++++|++||++|++||+.+||+|||+|+++|+||++|++||+++|
T Consensus 340 e~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L 419 (568)
T PLN02251 340 DFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETEL 419 (568)
T ss_pred hhCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchHHHH
Q 008424 418 ENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALM 497 (566)
Q Consensus 418 ~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~~~~ 497 (566)
++|+.+++|+++|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|.++++||++||
T Consensus 420 ~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~m 499 (568)
T PLN02251 420 EKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLM 499 (568)
T ss_pred hhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCCCCCcceeeeccCCC
Q 008424 498 DVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLELGAQ 565 (566)
Q Consensus 498 ~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~~ 565 (566)
|+||++|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.||++..
T Consensus 500 n~e~~~~~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~tl~~e~~~~ 567 (568)
T PLN02251 500 DVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGPGSDATNHTLKLELGAQ 567 (568)
T ss_pred hhhhhCCCcCccccccccCCCCHHHHHHHHHHHHhhhcCcCcCCCCccccCcccCCCceEEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999875
No 2
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=9.1e-151 Score=1232.38 Aligned_cols=535 Identities=75% Similarity=1.230 Sum_probs=517.5
Q ss_pred CCCHhhhhhhcCCCCCcccccC---CceeecCCCCCCCCChhHHHhhCCcccCCCeEEEecCCCCccCCCCCcEEEEEeC
Q 008424 26 VYSELQTSRIDHALPLPSVLKN---PFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLS 102 (566)
Q Consensus 26 ~~s~~~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~s 102 (566)
+.|+||++|++|+|+||++|++ .+++.+++++.++.++++|+++||||||+|+++|++.+. ......++||||++|
T Consensus 2 ~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~-~~~~~~~~~IgIl~S 80 (550)
T cd00765 2 VYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQD-APSSAPKLKIGIVLS 80 (550)
T ss_pred CccHHHHHHHhcCCCCChhhcCCccceEEeecCcccccCCHHHHHHhChhhhCCcceEEeecCC-cccCCCCCEEEEECC
Confidence 4689999999999999999988 578999999999999999999999999999999999753 333356689999999
Q ss_pred CCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHHHHHHH
Q 008424 103 GGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATE 182 (566)
Q Consensus 103 GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~ 182 (566)
||||||+||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||||++++++++++++++
T Consensus 81 GG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~ 160 (550)
T cd00765 81 GGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEE 160 (550)
T ss_pred CCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 008424 183 TAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARS 262 (566)
Q Consensus 183 ~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S 262 (566)
+|++++||+||+|||||||++|++|+|||+++|++++||||||||||||+++++|+|||||||+++++++|+||++|+.|
T Consensus 161 ~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s 240 (550)
T cd00765 161 TAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARS 240 (550)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchH
Q 008424 263 TGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPE 342 (566)
Q Consensus 263 ~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe 342 (566)
+++||||||||||+||||||+||||+|||+|||||++++++++|++|+++||+.|++|+.+||+||||+||||+++||||
T Consensus 241 ~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe 320 (550)
T cd00765 241 TGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPE 320 (550)
T ss_pred cCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhch---------HHHHHHHhhccCCCCCcccchhhhHHHHHHHH
Q 008424 343 VQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLP---------QAIQEQLMLERDPHGNVQVAKIETEKMLIQMV 413 (566)
Q Consensus 343 ~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp---------~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV 413 (566)
|+.||+|+|++++++..+.++.+.++||+|++++|.++| ++|++||+.+||+|||+|+++|+||++|++||
T Consensus 321 ~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV 400 (550)
T cd00765 321 VKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMV 400 (550)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHH
Confidence 999999999999887766666788999999999988777 99999999999999999999999999999999
Q ss_pred HHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccch
Q 008424 414 ETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493 (566)
Q Consensus 414 ~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl 493 (566)
+++|++|+..|+|+++|+.++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||
T Consensus 401 ~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl 480 (550)
T cd00765 401 ETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPL 480 (550)
T ss_pred HHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhcCCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCC--CCCcceeeec
Q 008424 494 TALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTS--GDVNHTLLLE 561 (566)
Q Consensus 494 ~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e 561 (566)
++|||+||+.|+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++|+||.||
T Consensus 481 ~~~mn~e~~~g~~~pvi~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e 550 (550)
T cd00765 481 TMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEGSDELSHTLLLE 550 (550)
T ss_pred HHHhccccccCCcceecccceeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeccCccccccCCceeeecC
Confidence 9999999999999999999999999999999999999999999999999999999977 9999999998
No 3
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.5e-149 Score=1233.29 Aligned_cols=538 Identities=43% Similarity=0.694 Sum_probs=513.2
Q ss_pred cCCCHhhhhhhcCCCCCcccccC-CceeecCCCCCCCCCh--hHHHhhCCcccCCCeEEEecCCC---Ccc--CCCCCcE
Q 008424 25 SVYSELQTSRIDHALPLPSVLKN-PFKIVDGPASSAAGNP--DEIAKLFPNLFGQPSALLVPNGA---DAV--RSDEKLK 96 (566)
Q Consensus 25 ~~~s~~~~~r~~~~p~lp~~l~~-~~~~~~~~~~~~~~~~--~~i~~~fp~~~~~~~~~~~~~~~---~~~--~~~~~~~ 96 (566)
.++|+||++|+.|+|+||++|++ .+++++++++.+..++ ++|+++|||||++|+++|.+++. ... .....+|
T Consensus 2 ~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r 81 (610)
T PLN03028 2 RELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVR 81 (610)
T ss_pred CCCCHHHHHHHhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccE
Confidence 47999999999999999999988 5889999999888777 89999999999999999998431 111 1344589
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
||||+||||||||||||+|++++++..+++++||||++||.||+++++++||++.++.|+|+|||++|||+|.++.++++
T Consensus 82 IgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~ 161 (610)
T PLN03028 82 VGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQ 161 (610)
T ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNV 256 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni 256 (566)
+++++++|++++||+||+|||||||++|++|+|||++++++++||||||||||||+++.+|+|||||||+++++++|+||
T Consensus 162 ~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni 241 (610)
T PLN03028 162 VNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 241 (610)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q 008424 257 MIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGL 336 (566)
Q Consensus 257 ~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl 336 (566)
++||.|+++||||||+|||+||||||+||||||||+||||||+..+++||.+|++.|++.|++|+++||+|||||||||+
T Consensus 242 ~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGl 321 (610)
T PLN03028 242 CTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGL 321 (610)
T ss_pred HHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHH
Q 008424 337 IDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETE 416 (566)
Q Consensus 337 ~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~ 416 (566)
++|||||+.||+|+|+++.++... ..+.++||+|+++||++||++||+||+.+||+|||+|+++|+||++|++||+++
T Consensus 322 ie~ipe~~~li~el~~~~~~g~~~--~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~e 399 (610)
T PLN03028 322 IESIPEVYALLQEIHGLLKQGVSV--DNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETE 399 (610)
T ss_pred cccCchHHHHHHHHHHHHhcCcch--hhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHH
Confidence 999999999999999998654322 235678999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCccc-cccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchHH
Q 008424 417 LENRKQEGVNKG-QFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTA 495 (566)
Q Consensus 417 L~~r~~~~~y~~-~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~~ 495 (566)
|++|+++|+|++ +|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++
T Consensus 400 L~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~ 479 (610)
T PLN03028 400 MNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITA 479 (610)
T ss_pred HHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhc------CCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCCCCCcceeeeccCC
Q 008424 496 LMDVERRH------GKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLELGA 564 (566)
Q Consensus 496 ~~~~e~~~------g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~ 564 (566)
|||+|||+ |+.+|+|+|++|||+|++|++|+++|++|+++|+|++||||||+||.+|++++||.+|++.
T Consensus 480 ~m~~~~~~~~~~~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~ 554 (610)
T PLN03028 480 MMSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQD 554 (610)
T ss_pred HhhHHhhcccccccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCcccCCceEeehhhhh
Confidence 99999997 7889999999999999999999999999999999999999999999999999999999875
No 4
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.2e-148 Score=1219.63 Aligned_cols=536 Identities=56% Similarity=0.916 Sum_probs=514.9
Q ss_pred CCCHhhhhhhcCCCCCcccccC---CceeecCCCCCCCCChhHHHhhCCcccCCCeEEEecCCCCccCCCCCcEEEEEeC
Q 008424 26 VYSELQTSRIDHALPLPSVLKN---PFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLS 102 (566)
Q Consensus 26 ~~s~~~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~s 102 (566)
++|+||++|+.|+|+||++|++ .++++++++++++.++++|+++|||||++|+++|++.+ .....++||||++|
T Consensus 2 ~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~---~~~~~~~~IgIl~s 78 (555)
T PRK07085 2 NKSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGS---ESSSKPLKVGVILS 78 (555)
T ss_pred CcCHHHHHHHhCCCCCCHHHhCCCCCceEeecCCccccCCHHHHHHhChHhhCCccEEEEeCC---CCcccceEEEEECC
Confidence 6799999999999999999975 58899999999999999999999999999999999974 22234789999999
Q ss_pred CCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHHHHHHH
Q 008424 103 GGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATE 182 (566)
Q Consensus 103 GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~ 182 (566)
|||||||||||+|+++++++.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|+++.++++++++++
T Consensus 79 GG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~ 158 (555)
T PRK07085 79 GGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLE 158 (555)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 008424 183 TAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARS 262 (566)
Q Consensus 183 ~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S 262 (566)
+|++++||+||+||||||+++|+.|+|||++++++++||||||||||||+++.||+|||||||+++++++|+||++||.|
T Consensus 159 ~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s 238 (555)
T PRK07085 159 TVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALS 238 (555)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchH
Q 008424 263 TGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPE 342 (566)
Q Consensus 263 ~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe 342 (566)
+++||||||+|||+||||||+|||||+||+|||||++++++++|++|+++|++.|++|+.+|++|||||||||+++|||+
T Consensus 239 ~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 318 (555)
T PRK07085 239 AKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIPE 318 (555)
T ss_pred cCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccc-------c-cCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHH
Q 008424 343 VQQLIAELNEILAHEVVD-------E-GGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVE 414 (566)
Q Consensus 343 ~~~li~el~~~l~~~~~~-------~-~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~ 414 (566)
|+.||+|||+++++.... . ...+.++||+|+++||++||.+|++||+.+||+|||+|+++|+||++|+++|+
T Consensus 319 ~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV~ 398 (555)
T PRK07085 319 MKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVK 398 (555)
T ss_pred HHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHHH
Confidence 999999999999654211 1 12367889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchH
Q 008424 415 TELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALT 494 (566)
Q Consensus 415 ~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~ 494 (566)
++|++|+.+|+|+++|++++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|+..++++|++.++||+
T Consensus 399 ~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~ 478 (555)
T PRK07085 399 KELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLT 478 (555)
T ss_pred HHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhcCCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCC--CCCcceeeeccCC
Q 008424 495 ALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTS--GDVNHTLLLELGA 564 (566)
Q Consensus 495 ~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~~~ 564 (566)
+|||+||++|+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++|+||.||++.
T Consensus 479 ~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~~ 550 (555)
T PRK07085 479 MMMNMERRHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELCDQRTLTLLLELNK 550 (555)
T ss_pred HHhcHHhhCCCCCceeeeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCCceEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999977 9999999999975
No 5
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.2e-147 Score=1209.68 Aligned_cols=532 Identities=60% Similarity=0.992 Sum_probs=510.5
Q ss_pred hhhhhhcCCCCCcccccC---CceeecCCCCCCCCChhHHHhhCCcccCCCeEEEecCCCCccCCCCCcEEEEEeCCCCC
Q 008424 30 LQTSRIDHALPLPSVLKN---PFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQA 106 (566)
Q Consensus 30 ~~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~a 106 (566)
||++|+.|+|+||++|++ .+++++++++.+..++++|+++|||||++|+++|.++..+ .....++||||++|||||
T Consensus 1 ~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~-~~~~~~~rIgIl~sGG~a 79 (539)
T TIGR02477 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEAS-PDEHQPLKIGVILSGGQA 79 (539)
T ss_pred CchhHhhCCCCCChHHcCCCcceEEeccCcccCCCCHHHHHHhChHhhCCccEEEecCCCC-cccccceEEEEECCCCCC
Confidence 699999999999999987 5888999999999999999999999999999999987522 233566899999999999
Q ss_pred chhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHH
Q 008424 107 PGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVK 186 (566)
Q Consensus 107 PG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~ 186 (566)
|||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||||+++.+++++++++++|++
T Consensus 80 PG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l~~ 159 (539)
T TIGR02477 80 PGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKK 159 (539)
T ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999988999999999899999999999999
Q ss_pred cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCe
Q 008424 187 LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKY 266 (566)
Q Consensus 187 l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~ 266 (566)
++||+||+||||||+++|+.|+|||+++|++++||||||||||||+++.+|+|||||||+++++++|+||++|+.|+++|
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~~~ 239 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKY 239 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999998777799999999999999999999999999999
Q ss_pred eEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHH
Q 008424 267 YHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQL 346 (566)
Q Consensus 267 ~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~l 346 (566)
|||||||||+||||||+||||||||+|||||++++++++|++|+++|++.|++|+.+|++|||||||||+++||||++.|
T Consensus 240 ~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe~~~L 319 (539)
T TIGR02477 240 WHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPEVQAL 319 (539)
T ss_pred EEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccc--cCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHHHHhhhccC
Q 008424 347 IAELNEILAHEVVDE--GGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEG 424 (566)
Q Consensus 347 i~el~~~l~~~~~~~--~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~ 424 (566)
++|+|++++++.... ...+.++||+|+++||.+||.+|++||+.+||+|||+|+++|+||++|++||+++|++|++++
T Consensus 320 i~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~~~~~ 399 (539)
T TIGR02477 320 IKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKEG 399 (539)
T ss_pred HHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhhhccc
Confidence 999999997654321 123668999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchHHHHhHHHhcC
Q 008424 425 VNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHG 504 (566)
Q Consensus 425 ~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g 504 (566)
+|+++|..++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|++.++++|++.++||++|||+||++|
T Consensus 400 ~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~~~g 479 (539)
T TIGR02477 400 EYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERRHG 479 (539)
T ss_pred cceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCC--CCCcceeeecc
Q 008424 505 KFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTS--GDVNHTLLLEL 562 (566)
Q Consensus 505 ~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~ 562 (566)
+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||+
T Consensus 480 ~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~~~tl~~e~ 539 (539)
T TIGR02477 480 EMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539 (539)
T ss_pred CCCccceeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCceEEEecC
Confidence 99999999999999999999999999999999999999999999995 99999999996
No 6
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=7.7e-140 Score=1205.27 Aligned_cols=534 Identities=46% Similarity=0.777 Sum_probs=506.7
Q ss_pred CCcCcCCCHhhhhhhcCCCCCcccccCCceeecCCCCCCCCCh--hHHHhhCCcccCCCeEEEecCCC--CccCCCCCcE
Q 008424 21 GRVASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNP--DEIAKLFPNLFGQPSALLVPNGA--DAVRSDEKLK 96 (566)
Q Consensus 21 ~~~~~~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~~~ 96 (566)
++.....|+||++|+.|+|+||++|++.++++++++++++.++ ++|+++|||||++|+++|+++.. ........+|
T Consensus 25 ~~~~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~~~~~kr 104 (1328)
T PTZ00468 25 SSLHEGQSNMQMWRRRWEPCLPHILRSPLSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKKFPARR 104 (1328)
T ss_pred hhhhcCcCHHHHHHHhcCCCCChHhcCceEEeecCCcccccCcchHHHHHhCccccCCcceEEeecCCCccccccccCCE
Confidence 4455677999999999999999999999999999999988777 99999999999999999998532 1112224489
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
||||+||||||||||||+|++++++..+++++||||++||.||+++++++|+++.++.|+|+|||++|||+|.++.++++
T Consensus 105 IGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~ 184 (1328)
T PTZ00468 105 IGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQ 184 (1328)
T ss_pred EEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNV 256 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni 256 (566)
+++++++|++++||+||+||||||+++|++|+|||+++|++++||||||||||||+++.+|+|||||||+++++++|+++
T Consensus 185 ~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl 264 (1328)
T PTZ00468 185 MRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSI 264 (1328)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987889999999999999999999
Q ss_pred HHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q 008424 257 MIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGL 336 (566)
Q Consensus 257 ~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl 336 (566)
+.||.|+++||||||+|||+||||||+||||++||+|||||+++.+++||++|+++|++.|.+|++.|++|||||||||+
T Consensus 265 ~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGl 344 (1328)
T PTZ00468 265 MDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGL 344 (1328)
T ss_pred HHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhhhccccccCc-hhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHH
Q 008424 337 IDFIPEVQQLIAELNEILAHEVVDEGGQ-WKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVET 415 (566)
Q Consensus 337 ~e~ipe~~~li~el~~~l~~~~~~~~g~-~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~ 415 (566)
++||||++.||+|||++++++ +++. +.++||+|++++|++||++|++||+.+||+|||+|+++|+||++|+++|++
T Consensus 345 iefIpe~~~Li~eln~~l~~~---~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~ 421 (1328)
T PTZ00468 345 IEFIPEFETLIKELNLILLKT---NDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKE 421 (1328)
T ss_pred cccccHHHHHHHHHHHhhccc---cchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHH
Confidence 999999999999999999653 3344 667999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchHH
Q 008424 416 ELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTA 495 (566)
Q Consensus 416 ~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~~ 495 (566)
+|++|+.+ |. +|.+++|+|||+|||+.||+||++|||+||+.|++++.+|+||||++|+|+..++++|+++++||++
T Consensus 422 ~L~~~~~~--~~-~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~ 498 (1328)
T PTZ00468 422 KLEEVKKD--YI-LDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTY 498 (1328)
T ss_pred HHHHhhcc--cc-cCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHH
Confidence 99999865 55 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhcCCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCCCCCcceeee
Q 008424 496 LMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLL 560 (566)
Q Consensus 496 ~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~ 560 (566)
|||+|+|+|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.++.+++++..
T Consensus 499 mmn~E~r~g~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y~~pGPiQ~~gp~~~~~~~~~~~ 563 (1328)
T PTZ00468 499 MMNIELRKGKSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNYMISP 563 (1328)
T ss_pred HhhHHhhCCCccceeeecccCCCcHHHHHHHHHHHHhhhcCcccCCCCeeeccCcccCcceeccC
Confidence 99999999999999999999999999999999999999999999999999999999998887653
No 7
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.6e-136 Score=1182.08 Aligned_cols=538 Identities=37% Similarity=0.614 Sum_probs=490.4
Q ss_pred CcCcCCCHhhhhhhcCCCCCcccccCC-ceeecCC--CCCCCCChhHHHhhCCcccCCCeEEEecCC--CCccCCCCCcE
Q 008424 22 RVASVYSELQTSRIDHALPLPSVLKNP-FKIVDGP--ASSAAGNPDEIAKLFPNLFGQPSALLVPNG--ADAVRSDEKLK 96 (566)
Q Consensus 22 ~~~~~~s~~~~~r~~~~p~lp~~l~~~-~~~~~~~--~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~--~~~~~~~~~~~ 96 (566)
+..+++|++|..|..++|++|.++... .+++... .+.....++++...|||+.....+.+.... ......+..+|
T Consensus 759 ~~~~~~s~~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r 838 (1419)
T PTZ00287 759 KSLGCMSELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQEIFHDKYATPISFEIK 838 (1419)
T ss_pred hhhccccHHhhhccccCccchhhhhhhHhhcccceeeecCChhhhhhhhhcccchhhhhhhhHhhhhccccccCCcCCcE
Confidence 677889999999999999999988432 2222211 111234578999999998886655432221 11233446689
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCC-CCCCHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRD-KIETPE 175 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~-k~~~~e 175 (566)
|||||||||||||||||+|++++++..+ +. ++||. ||.||+++++++||.++++.|+|+|||+++||+|. ++.++|
T Consensus 839 IGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~gf~-G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~e 915 (1419)
T PTZ00287 839 IGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIAFY-GLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKE 915 (1419)
T ss_pred EEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEEEe-CchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCCHH
Confidence 9999999999999999999999986554 44 57766 99999999999999999999999999977799994 678999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGN 255 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~n 255 (566)
++++++++|++++||+||+||||||+++|+.|+|||+++|++++||||||||||||++..+|+|||||||+++++++|+|
T Consensus 916 ~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~seaI~n 995 (1419)
T PTZ00287 916 NRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGN 995 (1419)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997777999999999999999999
Q ss_pred HHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q 008424 256 VMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEG 335 (566)
Q Consensus 256 i~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEG 335 (566)
|++||.|++|||||||||||+||||||+||||||||+|||||++..+++||++|+++|++.|++|+++||+|||||||||
T Consensus 996 L~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVlV~EG 1075 (1419)
T PTZ00287 996 VLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDA 1075 (1419)
T ss_pred HHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhhc----c-----c-----------------------cc---cCchhhhcchhhHHHhhhc
Q 008424 336 LIDFIPEVQQLIAELNEILAHE----V-----V-----------------------DE---GGQWKKKLTKQSLQLFEFL 380 (566)
Q Consensus 336 l~e~ipe~~~li~el~~~l~~~----~-----~-----------------------~~---~g~~~~~ls~~~~~lf~~l 380 (566)
|++|||||+.||+|||+++++. . . +. ...+.++||||+++||++|
T Consensus 1076 Lie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~lf~sl 1155 (1419)
T PTZ00287 1076 LLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTF 1155 (1419)
T ss_pred HHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHHHHhc
Confidence 9999999999999999998641 0 0 00 1237789999999999999
Q ss_pred hHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHH
Q 008424 381 PQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYG 460 (566)
Q Consensus 381 p~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~ 460 (566)
|.+|++||+ +||+ ||+|+|+||||+||++||+++|++|+++|+|+++|++++||||||+||+.||+|||+|||+||+.
T Consensus 1156 P~~i~~qLl-~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y~LG~~ 1233 (1419)
T PTZ00287 1156 PQFIIKELL-HVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAYSYGHA 1233 (1419)
T ss_pred cHHHHHHHh-ccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHHHHHHH
Confidence 999999998 9999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceEEEecCCCCCccceEEeccchHHHHhHHHhc----------CCCcceeeecccccCChhhHHHHHhhh
Q 008424 461 AGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRH----------GKFKPVIKKAMVELDGAPFKKFVSMRD 530 (566)
Q Consensus 461 Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~----------g~~~p~i~~~~V~l~g~~f~~~~~~r~ 530 (566)
|+.++.+|+||||++|+|++.|+++|.++++||++||++|+|+ |+.+|||+|++|||+|+||+.|+++|+
T Consensus 1234 A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ve~r~~~~k~~~~~~g~~~pvI~k~~Vdl~g~~fk~~~~~r~ 1313 (1419)
T PTZ00287 1234 ASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSLKIALQ 1313 (1419)
T ss_pred HHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhchhhhccccccccccccCccccccccccCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 889999999999999999999999999
Q ss_pred cccccCcccCCccccccCCCCCCCcceeeeccCC
Q 008424 531 EWALNNRYISPGPIQFTGPTSGDVNHTLLLELGA 564 (566)
Q Consensus 531 ~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~ 564 (566)
+|+++|+|++||||||+||.+|++++||.+|++.
T Consensus 1314 ~W~~~d~y~~PGPiQ~~g~~~~~~~~tL~~e~~~ 1347 (1419)
T PTZ00287 1314 KWQMEDRFCNPGPIQFEGNASNYYNRILFEEQSE 1347 (1419)
T ss_pred hhhhcCcCCCCCCccccCccccCcCeeeeHhHHH
Confidence 9999999999999999999999999999999863
No 8
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=5.6e-135 Score=1172.15 Aligned_cols=533 Identities=42% Similarity=0.737 Sum_probs=504.8
Q ss_pred CcCcCCCHhhhhhhcCCCCCcccccCCce---eecCCCCCCCCChhHHHhhCCcccCCCeEEEecCCCCc-cCCCCCcEE
Q 008424 22 RVASVYSELQTSRIDHALPLPSVLKNPFK---IVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADA-VRSDEKLKI 97 (566)
Q Consensus 22 ~~~~~~s~~~~~r~~~~p~lp~~l~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~-~~~~~~~~I 97 (566)
....+.|+||++|+.|+|+||++|++.++ +.+++++.+..+.++++++||++++.|.+++.+..... .....++||
T Consensus 101 ~l~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~g~~~~~~~d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~rI 180 (1419)
T PTZ00287 101 SLNDDLSPLQYERIKYQPTLPKALASEYQILEENHGDDFINKKDYEEVKRFLKNLHNLPILNVKETNNHESFKGGNVLKI 180 (1419)
T ss_pred hhhcccCHHHHHHHhcCCCCchhhccccccceeccCcccccccCHHHHHHHHHHhhcCceeeecCCCccccccccCceEE
Confidence 44567899999999999999999998888 78899999999999999999999999999998753111 222345899
Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHH
Q 008424 98 GVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQF 177 (566)
Q Consensus 98 gIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~ 177 (566)
||++||||||||||||+|++++++..+++++||||++||.||+++++++|++++++.|+|+|||++|||||.++.+++++
T Consensus 181 gIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~~~e~~ 260 (1419)
T PTZ00287 181 GIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDL 260 (1419)
T ss_pred EEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCCCHHHH
Confidence 99999999999999999999999877889999999999999999999999999999999999998999999999889999
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVM 257 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~ 257 (566)
++++++|++++||+||+||||||+++|++|+||+.+.+++++||||||||||||+++.+|+|||||||+++++++|+|++
T Consensus 261 ~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~I~ni~ 340 (1419)
T PTZ00287 261 IAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLC 340 (1419)
T ss_pred HHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998767799999999999999999999
Q ss_pred HHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 008424 258 IDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLI 337 (566)
Q Consensus 258 ~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~ 337 (566)
.|+.|++++|||||||||+|||||++||||++||+|||||+++.++++|++|+++|++.|.+|+..|++|||||||||++
T Consensus 341 ~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIvVsEGli 420 (1419)
T PTZ00287 341 TDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPEGLI 420 (1419)
T ss_pred HHHHHhCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHHH
Q 008424 338 DFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETEL 417 (566)
Q Consensus 338 e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~L 417 (566)
+||||++.||+|||++++++.. ..++++ |++++|++||.++++||+.+||+|||+||++|+||++|++||+++|
T Consensus 421 e~Ipe~~~Li~eln~~l~~g~~-----~~~~~~-~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 421 EFVPEMKILIGELNVILKEGPF-----DASKLK-HSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred hhcchHHHHHHHhhhhcccCcc-----hhhhhh-hhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 9999999999999999976532 223456 8999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchHHHH
Q 008424 418 ENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALM 497 (566)
Q Consensus 418 ~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~~~~ 497 (566)
+++++++. +|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|+..++++|+++++||++||
T Consensus 495 ~~~~~~g~---~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m 571 (1419)
T PTZ00287 495 AKLNDNNL---NIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIM 571 (1419)
T ss_pred HHHHhcCC---CeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHh
Confidence 99987663 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhc-CCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCCCCCcceeeeccC
Q 008424 498 DVERRH-GKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLELG 563 (566)
Q Consensus 498 ~~e~~~-g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~ 563 (566)
++|+|+ |+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.+|..
T Consensus 572 ~~e~~~~g~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~Y~~pGpiQ~~g~~~d~~~~tl~~e~~ 638 (1419)
T PTZ00287 572 HVNRDNTGKEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSNSRCYTVKIPTK 638 (1419)
T ss_pred hHHhhccCCCceeEEeeeeCCCCHHHHHHHHHHHHhhhcccccCCCCeeccccccCCCceeeeccch
Confidence 999998 999999999999999999999999999999999999999999999999999999999974
No 9
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2e-123 Score=1069.63 Aligned_cols=533 Identities=23% Similarity=0.380 Sum_probs=471.4
Q ss_pred CcCcCCCHhhhhhhcCCCCCcccccCC-ceeecCC-CCCC--CCChhHHHhhCCcccCC---CeEEEecCC---------
Q 008424 22 RVASVYSELQTSRIDHALPLPSVLKNP-FKIVDGP-ASSA--AGNPDEIAKLFPNLFGQ---PSALLVPNG--------- 85 (566)
Q Consensus 22 ~~~~~~s~~~~~r~~~~p~lp~~l~~~-~~~~~~~-~~~~--~~~~~~i~~~fp~~~~~---~~~~~~~~~--------- 85 (566)
++..++|+||..|.+|+|++|.+|... .+....- .+.+ .....+|.+.||+...+ ..+++...+
T Consensus 581 ~~~~~~s~l~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 660 (1328)
T PTZ00468 581 THKLCGSELSQNRCKDDLKIPKILLSTASKFNDDLIISSSCRDLDAYIITKCLPHQTGRHNSKTLQLREEEYSSPFTEIR 660 (1328)
T ss_pred hcccccchhhhhhhcCCCCCchhhhhhhcccchhhcccCchHHHHHHHHHhhCcHhhhcccCcceEEEeccccCchhhcc
Confidence 456889999999999999999999654 2211111 1111 24556888899998776 445555443
Q ss_pred ---CCccC---CCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEe--cC----ccccc
Q 008424 86 ---ADAVR---SDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVE--LT----SNYIY 153 (566)
Q Consensus 86 ---~~~~~---~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~e--Lt----~~~v~ 153 (566)
..... ....++||||+.||||||+||||+|++.++. +.+ |+||++|+.||++++... || .++++
T Consensus 661 ~~~~~~~~~~~~~~~~~vgIv~~g~~aPG~NnVI~g~~~~~~--~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~ 736 (1328)
T PTZ00468 661 ESSSSKSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLP--SLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEFFE 736 (1328)
T ss_pred ccccCcccccccccceeEEEEecCCCCccHHHHHHHHHHHHH--hCC--cEEEEechhHHhcCCceEEecccchhHHHHH
Confidence 00000 1144899999999999999999999999975 333 999999999999998644 44 36899
Q ss_pred chhccCCccccccC----------CCCCCCH-----H---------------HHHHHHHHHHHcCCCEEEEeCCchhHHH
Q 008424 154 PYRNQGGFDMICSG----------RDKIETP-----E---------------QFKQATETAVKLDLDGLVVIGGDDSNTN 203 (566)
Q Consensus 154 ~~~n~GG~~~LGSs----------R~k~~~~-----e---------------~~~~~~~~l~~l~Id~LviIGGddS~t~ 203 (566)
.++|+||+ ++.++ |+.+.+. + +.+.+.++|++++||+||+||||||+++
T Consensus 737 ~~~n~GG~-~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~ 815 (1328)
T PTZ00468 737 NSLNSGGC-IFPNGVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATF 815 (1328)
T ss_pred HHHhcCCe-eeeccccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 99999998 77777 6544322 3 5688999999999999999999999999
Q ss_pred HHHHHHHHhhcC-----CCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCc
Q 008424 204 ACLLAEHFRSKN-----LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAAS 278 (566)
Q Consensus 204 A~~Lae~~~~~~-----~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag 278 (566)
|+.|+|+|.+++ ++++||||||||||||+++++|+|||||||+++++++|+|+++|++|+++||||||||||+||
T Consensus 816 A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag 895 (1328)
T PTZ00468 816 GASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTS 895 (1328)
T ss_pred HHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChH
Confidence 999999998865 579999999999999999888899999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcCCcEEEeCCchhhh----------hcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCch---HHHH
Q 008424 279 HITLECALQTHPNITIIGEEVAAK----------KQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIP---EVQQ 345 (566)
Q Consensus 279 ~LALe~aLqt~pnivlIpEe~~~~----------~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ip---e~~~ 345 (566)
||||+||||||||+|||||++.++ +++|++|+++||+.|++|+++||+|||||||||+++||| |++.
T Consensus 896 ~LAL~~gLatganivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~ 975 (1328)
T PTZ00468 896 NVALEVGIQTHPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRK 975 (1328)
T ss_pred HHHHHHHHhhCCCEEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHH
Confidence 999999999999999999999654 689999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhhhccccc------cCchhhhcchhhHHH---hhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHH
Q 008424 346 LIAELNEILAHEVVDE------GGQWKKKLTKQSLQL---FEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETE 416 (566)
Q Consensus 346 li~el~~~l~~~~~~~------~g~~~~~ls~~~~~l---f~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~ 416 (566)
||.| +++++..+. ...+.++||+|++++ |.+||.+|++||+++|| ||+|||+||||++|++||++|
T Consensus 976 li~e---~~a~~~~~~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~~e 1050 (1328)
T PTZ00468 976 IFSR---FSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQKE 1050 (1328)
T ss_pred HHHH---HhhhccccccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHHHH
Confidence 9998 444333221 123667999999999 99999999999999999 999999999999999999999
Q ss_pred HHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-CceEEEecCCCCCccceEEeccchHH
Q 008424 417 LENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK-TGLISSVGNLAAPVEEWTVSGTALTA 495 (566)
Q Consensus 417 L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~-tG~mv~i~nl~~~~~~w~~~~vPl~~ 495 (566)
|++|+++|+|+++|++++|||||++||+.||+|||+|||+||+.|+.++.+|+ ||||++|+|++.|+++|.++++||++
T Consensus 1051 l~~rk~~g~y~g~f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~ 1130 (1328)
T PTZ00468 1051 LKFRRSKNKIKNGMNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISS 1130 (1328)
T ss_pred HHHHHhcCccccccceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHH
Confidence 99999999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHhHHHhcC-------------CCcceeee----------------cccc-cCChhhHHHHHhhhcccccCcccCCcccc
Q 008424 496 LMDVERRHG-------------KFKPVIKK----------------AMVE-LDGAPFKKFVSMRDEWALNNRYISPGPIQ 545 (566)
Q Consensus 496 ~~~~e~~~g-------------~~~p~i~~----------------~~V~-l~g~~f~~~~~~r~~w~~~d~y~~pGpiq 545 (566)
||++|+|+| +.||||+| ++|| |+|+||+.|+++|++|+++|+|++|||||
T Consensus 1131 mm~~~~~~~~~~~~~~~~~~~~~~k~vi~~~~~~~~~~~~~~~~~~~~Vd~l~g~~f~~~~~~r~~w~~~d~y~~PGPiQ 1210 (1328)
T PTZ00468 1131 LMTLNIEGDKIMDSRNNSNLSFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQ 1210 (1328)
T ss_pred hhCcccccCcccccccccccccccccceeccccccccccccccccccccccccCHHHHHHHHHHHhhhhccccCCCCCcc
Confidence 999999999 77999999 8999 79999999999999999999999999999
Q ss_pred ccCCCCCCCcceeeeccCC
Q 008424 546 FTGPTSGDVNHTLLLELGA 564 (566)
Q Consensus 546 ~~g~~~~~~~~tl~~e~~~ 564 (566)
|+||.+|++++||.+|++.
T Consensus 1211 ~~gp~~~~~~~tL~~e~~~ 1229 (1328)
T PTZ00468 1211 YFNLFKNLFNRTLFESEYV 1229 (1328)
T ss_pred ccCccccCCCeeeeehhhH
Confidence 9999999999999999864
No 10
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1.1e-84 Score=682.30 Aligned_cols=336 Identities=40% Similarity=0.547 Sum_probs=310.9
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC-CC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI-ET 173 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~-~~ 173 (566)
+||||++|||||||+|++|+|+++++.. .+++||||++||+||+++++++|+++.++.|+++||+ +|||+|+++ .+
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT-IIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe-ecccCCCCccCC
Confidence 5899999999999999999999999754 4689999999999999999999999999999999998 999999986 67
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I 253 (566)
++++++++++|++++||+||+||||||+++|++|+|+|++++.+++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td--~s~Gf~TA~~~~~~~i 155 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTD--YTIGFDTALKTIVEAI 155 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcc--cCcCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999777 8999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008424 254 GNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333 (566)
Q Consensus 254 ~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIp 333 (566)
++++.||.| +++|||||+|||+|||||++||||++||+|||||+++. .+.++.+++.|++|+++|++|++|+|+
T Consensus 156 ~~l~~~a~s-~~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~-----~~~~~~~~~~i~~r~~~~~~~~vivvs 229 (338)
T cd00363 156 DRIRDTASS-HQRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAA-----DEWEEEMVDVIKKRRERGKRHGIVIVA 229 (338)
T ss_pred HHHHHhccc-CCCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 999999999 55789999999999999999999999999999999964 345789999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHH
Q 008424 334 EGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMV 413 (566)
Q Consensus 334 EGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV 413 (566)
||+.+.+|. ..++.+|+++|
T Consensus 230 EG~~~~~~~------------------------------------------------------------~~~~~~l~~~i 249 (338)
T cd00363 230 EGAIDFIPK------------------------------------------------------------PITEKLLAKLV 249 (338)
T ss_pred CCCcccccc------------------------------------------------------------CchHHHHHHHH
Confidence 999753221 12356788888
Q ss_pred HHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccch
Q 008424 414 ETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493 (566)
Q Consensus 414 ~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl 493 (566)
++++ .+++|.++|||+|||+.||+||+.||++||..|++++.+|.||+|++++|++ +|++..+||
T Consensus 250 ~~~~-----------~~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~----~~~~~~vpl 314 (338)
T cd00363 250 EERL-----------GFDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPL 314 (338)
T ss_pred HHHc-----------CCceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCc----cCEEEEecH
Confidence 7776 3678899999999999999999999999999999999999999999999985 999999999
Q ss_pred HHHHhHHHhcCCCcceeeecccccCChhhHHHH
Q 008424 494 TALMDVERRHGKFKPVIKKAMVELDGAPFKKFV 526 (566)
Q Consensus 494 ~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~ 526 (566)
.++++.||+.+ ||++|++|+.|.
T Consensus 315 ~~~~~~~~~~~----------~~~~~~~~~~~~ 337 (338)
T cd00363 315 TEAVNMTKRVG----------VDLEGRPFKKFA 337 (338)
T ss_pred HHHHhhhcccc----------cCCChHHHHHhh
Confidence 99999998776 999999999874
No 11
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4.8e-81 Score=669.45 Aligned_cols=342 Identities=21% Similarity=0.322 Sum_probs=303.7
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccc---hhccCCccccccCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYP---YRNQGGFDMICSGRDK 170 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~---~~n~GG~~~LGSsR~k 170 (566)
.+||||++|||||||||++|+|+++++....+.++||||++||+||+++++++|+...++. +.++||+ +|||||++
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt-~LgssR~~ 81 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSG-ALGSCRYK 81 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCe-EeccCCCC
Confidence 4799999999999999999999999976655559999999999999999999999866666 8999998 99999998
Q ss_pred C----CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH
Q 008424 171 I----ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC 246 (566)
Q Consensus 171 ~----~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~ 246 (566)
+ .+++++++++++|++++||+||+||||||+++|++|+|+++++|++++||||||||||||.+|| +|||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD--~t~GF~TA~ 159 (416)
T PRK14072 82 LKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTD--HCPGFGSAA 159 (416)
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCC--CCCChHHHH
Confidence 6 3688999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHHHHHHHHhhcCC--eeEEEEEcCCCCchHHHHhhhh-----cCCcEEEeCCchhhhhcchHhHHHHHHHHHHH
Q 008424 247 KIYAEMIGNVMIDARSTGK--YYHFVRLMGRAASHITLECALQ-----THPNITIIGEEVAAKKQTLKNVTDYIVDIICK 319 (566)
Q Consensus 247 k~~se~I~ni~~Da~S~~k--~~~fVevMGR~ag~LALe~aLq-----t~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~ 319 (566)
++++++|++|+.|+.|+.+ +|||||||||+||||||++||| ++||+|||||.+++ .+.+++.|++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE~~~~--------~~~~~~~i~~ 231 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPFD--------EEKFLADVRA 231 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccCCCCC--------HHHHHHHHHH
Confidence 9999999999888877543 6999999999999999999999 99999999999874 2455566676
Q ss_pred HHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcc
Q 008424 320 RAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQ 399 (566)
Q Consensus 320 R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ 399 (566)
+++. ++|++|+|+||+.+ +++..+.. . ...+|+|||++
T Consensus 232 ~~~~-~~~~ivvVaEG~~~----------------------~~g~~i~e------------------~-~~~~D~~gh~~ 269 (416)
T PRK14072 232 IVKR-YGYCVVVVSEGIRD----------------------ADGKFIAE------------------A-GLAEDAFGHAQ 269 (416)
T ss_pred HHHh-CCCeEEEEecCccc----------------------ccccchhc------------------c-ccccCCCCCcc
Confidence 6655 89999999999853 11211110 0 12359999999
Q ss_pred cchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEec
Q 008424 400 VAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGL--PTNFDATYCYALGYGAGALLHSGKTGLISSVG 477 (566)
Q Consensus 400 ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~--PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~ 477 (566)
++++ +++|+++|++++. +++|++++||+||||. ||+||+.||++||..|++++.+|++|+|++++
T Consensus 270 l~g~--~~~La~~i~~~~g-----------~~~R~~~LG~~QRgg~~~ps~~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~ 336 (416)
T PRK14072 270 LGGV--APVLANLIKEKLG-----------KKVHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMPAIR 336 (416)
T ss_pred cccH--HHHHHHHHHHHhC-----------CeEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 9985 7889999888764 5678999999999998 99999999999999999999999999999999
Q ss_pred CCCCCccceEEeccchHHHHhHHH
Q 008424 478 NLAAPVEEWTVSGTALTALMDVER 501 (566)
Q Consensus 478 nl~~~~~~w~~~~vPl~~~~~~e~ 501 (566)
|...++|+|++..+||.++++.+|
T Consensus 337 ~~~~~~y~~~~~~vpl~~v~~~~k 360 (416)
T PRK14072 337 RTSDDPYKWKIGLVPLSKVANKEK 360 (416)
T ss_pred cCCCCcceeEEEcccHHHHHhhcC
Confidence 999999999999999999998544
No 12
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-81 Score=653.45 Aligned_cols=343 Identities=33% Similarity=0.429 Sum_probs=299.0
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IE 172 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~ 172 (566)
++||||+|||||||||||||+|++++++.. +++||||++||.||+++++++|+++.++.|+|+||| +|||+|.+ ++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT-~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT-FLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCe-EEeeCCCCCcc
Confidence 589999999999999999999999997654 999999999999999999999999999999999998 99999975 88
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEM 252 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~ 252 (566)
++|..+++++++++++||+||+||||||+++|+.|+|++ +++|||||||||||+..+| +|||||||+++++++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td--~tiGfdTA~~~~~ea 151 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTD--FTIGFDTALETAVEA 151 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccc--cCccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999986 3899999999999999777 899999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 008424 253 IGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332 (566)
Q Consensus 253 I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlI 332 (566)
|++|+ |+.|++++|||||||||+||||||+||||++||+|+|||++++. .+.+.++....+|..+||+|++|++
T Consensus 152 id~l~-dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~-----~i~~~~~~i~~~~~~~gk~~~iIvv 225 (347)
T COG0205 152 IDNLR-DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPADL-----IIEELIAEIKAKREARGKKHAIIVV 225 (347)
T ss_pred HHHHH-HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCccccc-----hHHHHHHHHHHHHHHhCCCceEEEE
Confidence 99998 77777788999999999999999999999999999999999754 3334444444556669999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHH
Q 008424 333 PEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQM 412 (566)
Q Consensus 333 pEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~l 412 (566)
+||+.+++++ +|+.. ...
T Consensus 226 aEG~~~~~~~----------------------------------------------------~~~~~----------~~~ 243 (347)
T COG0205 226 AEGAIDQIGE----------------------------------------------------NGAEL----------LAA 243 (347)
T ss_pred cccccccccc----------------------------------------------------chhhH----------HHH
Confidence 9999886553 11111 111
Q ss_pred HHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccc
Q 008424 413 VETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTA 492 (566)
Q Consensus 413 V~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vP 492 (566)
+++.+... .+++|.++|||+|||+.||+||+.||+.||..||+++.+|++|+|++++|++.....|.....|
T Consensus 244 i~~~~~~~--------~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~~~~ 315 (347)
T COG0205 244 IEELLALG--------DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAP 315 (347)
T ss_pred HHHHhhhc--------ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEeehhHhhhhh
Confidence 22222211 1688999999999999999999999999999999999999999999999999888888888888
Q ss_pred hHHHHhHHHhcCCCcceeeecccccCChhhHHHH
Q 008424 493 LTALMDVERRHGKFKPVIKKAMVELDGAPFKKFV 526 (566)
Q Consensus 493 l~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~ 526 (566)
...+++.++ .++.+++++|++...++..+.
T Consensus 316 ~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~ 345 (347)
T COG0205 316 LKMVMSLEE----PDRSIKLDLVDLAKRLGIYFG 345 (347)
T ss_pred hhhhhcccc----cCcchhhHHHhhhhhhhhhhc
Confidence 888777655 446688999999888887653
No 13
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=1.9e-77 Score=623.55 Aligned_cols=320 Identities=26% Similarity=0.399 Sum_probs=283.2
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEec-CcccccchhccCCccccccCCCCCC--
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVEL-TSNYIYPYRNQGGFDMICSGRDKIE-- 172 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eL-t~~~v~~~~n~GG~~~LGSsR~k~~-- 172 (566)
|||||+|||||||||++|+|+++++.+ +++++||||++||+||+++++++| ++++++.|+++||+ +|||+|+++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~-~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt-~LgtsR~~~~~~ 78 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIA-EYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT-ILGSSRTNPFKY 78 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHH-cCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc-cccCCCCCcccc
Confidence 699999999999999999999998643 457899999999999999999999 99999999999997 9999999864
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEM 252 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~ 252 (566)
+++++++++++|++++||+||+||||||+++|+.|+|. +++|||||||||||++++| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~------gi~vigiPkTIDNDl~gtd--~tiGfdTA~~~~~~~ 150 (324)
T TIGR02483 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK------GLPVVGVPKTIDNDLEATD--YTFGFDTAVEIATEA 150 (324)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc------CCCEEeeccccCCCCcCCc--cCcCHHHHHHHHHHH
Confidence 35889999999999999999999999999999999873 4899999999999999887 899999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 008424 253 IGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332 (566)
Q Consensus 253 I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlI 332 (566)
|++++.||.|++| |||||+|||+||||||+||||++||++||||+++ + .+++++.|++|+++|++|++|+|
T Consensus 151 i~~i~~ta~S~~r-~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~----~----~~~l~~~v~~~~~~g~~~~vvvv 221 (324)
T TIGR02483 151 LDRLHTTAESHHR-VMVVEVMGRHAGWIALHSGIAGGADVILIPEIPF----D----IDSVCEKVRERFARGKRFAIVVV 221 (324)
T ss_pred HHHHHHHHhhcCC-EEEEEEcCCChhHHHHHHHhccCCCEEEecCCCC----C----HHHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999875 7999999999999999999999999999999975 3 35677888999999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHH
Q 008424 333 PEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQM 412 (566)
Q Consensus 333 pEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~l 412 (566)
+||+.+.. +... + + ...+|+|||++++++ .++|+++
T Consensus 222 sEG~~~~~----------------------~~~~----------~--------~--~~~~d~~gh~~~~~~--~~~l~~~ 257 (324)
T TIGR02483 222 AEGAKPKG----------------------GEMV----------V--------Q--EGVKDAFGHVRLGGI--GNWLAEE 257 (324)
T ss_pred ecCccccc----------------------cchh----------c--------c--ccccccccCcccCcH--HHHHHHH
Confidence 99986421 1100 0 0 024799999999885 5677777
Q ss_pred HHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccc
Q 008424 413 VETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTA 492 (566)
Q Consensus 413 V~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vP 492 (566)
+++++. +++|...+||.|||+.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+|
T Consensus 258 i~~~~g-----------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p 319 (324)
T TIGR02483 258 IERRTG-----------IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTD-------IVYVP 319 (324)
T ss_pred HHHhcC-----------CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEee
Confidence 766542 577889999999999999999999999999999999999999999999874 67788
Q ss_pred hHHH
Q 008424 493 LTAL 496 (566)
Q Consensus 493 l~~~ 496 (566)
|.++
T Consensus 320 ~~~~ 323 (324)
T TIGR02483 320 IAEA 323 (324)
T ss_pred HHHh
Confidence 8764
No 14
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=6.6e-77 Score=641.18 Aligned_cols=338 Identities=25% Similarity=0.348 Sum_probs=301.2
Q ss_pred CCeEEEecCCCCccCCCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccch
Q 008424 76 QPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155 (566)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~ 155 (566)
+..+.|.|. ..|||||||||+|||||+||++++.++...+...+||||++||+||+++++++||++.++.|
T Consensus 78 r~~~~f~p~---------~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i 148 (459)
T PTZ00286 78 RKHLYFNPK---------EVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTI 148 (459)
T ss_pred ceeEEEccc---------ccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhH
Confidence 345556554 38999999999999999999999999875556789999999999999999999999999999
Q ss_pred hccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCC
Q 008424 156 RNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKE 235 (566)
Q Consensus 156 ~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ 235 (566)
+++||+ +|||||.++ ++++++++|++++||+||+||||||+++|..|+|+++++|++|+||||||||||||+.+|
T Consensus 149 ~~~GGT-iLGTSR~~~----~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td 223 (459)
T PTZ00286 149 HRLGGT-ILGSSRGGF----DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIID 223 (459)
T ss_pred HhCCCc-eeccCCChh----hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcc
Confidence 999997 999999873 689999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcC-CcEEEeCCchhhhhcchHhHHHHHH
Q 008424 236 VPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTDYIV 314 (566)
Q Consensus 236 ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~-pnivlIpEe~~~~~~tL~~v~~~i~ 314 (566)
+|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||.++ +| +.++
T Consensus 224 --~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f----~l----~~ll 293 (459)
T PTZ00286 224 --ESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDI----PL----EGVL 293 (459)
T ss_pred --cCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCC----CH----HHHH
Confidence 9999999999999999999999999988899999999999999999999996 99999999985 44 4556
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCC
Q 008424 315 DIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDP 394 (566)
Q Consensus 315 ~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~ 394 (566)
+.|++|++ +++|+||||+||+.+.+.+ +. +...+|+
T Consensus 294 ~~l~~r~~-~~~~~VIVVaEGa~~~~~~--------------------~~-----------------------~~~~~D~ 329 (459)
T PTZ00286 294 EYIEQRLQ-KKGHCVIVVAEGAGQSLKD--------------------AD-----------------------LDLGTDA 329 (459)
T ss_pred HHHHHHHh-cCCcEEEEEecCCcccccc--------------------cc-----------------------ccccccc
Confidence 77777875 4889999999999643211 00 0124799
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 008424 395 HGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLIS 474 (566)
Q Consensus 395 ~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv 474 (566)
+||+++.++ +.+|++.|+++++++. ..++++...+||+|||+.||+||+.||+.||..|++++++|.||+|+
T Consensus 330 ~Gn~~l~di--g~~L~~~I~~~~~~~~------~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~V 401 (459)
T PTZ00286 330 SGNKKLWDI--GVYLKDEITKYLKKKK------PEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFII 401 (459)
T ss_pred cCCcccccH--HHHHHHHHHHHHhhcc------CceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Confidence 999999876 7899999999887653 24778889999999999999999999999999999999999999999
Q ss_pred EecCCCCCccceEEeccchHHH
Q 008424 475 SVGNLAAPVEEWTVSGTALTAL 496 (566)
Q Consensus 475 ~i~nl~~~~~~w~~~~vPl~~~ 496 (566)
++++. +...+||..+
T Consensus 402 g~~~~-------~~~~vPl~~v 416 (459)
T PTZ00286 402 GHVHN-------NYVMIPIKEM 416 (459)
T ss_pred EEECC-------EEEEEeHHHH
Confidence 99986 4778999886
No 15
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=6.7e-77 Score=640.22 Aligned_cols=355 Identities=23% Similarity=0.306 Sum_probs=308.5
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
...|||||||||+|||||+||+++++.+...+...+||||++||+||+++++++||++.++.|.++||+ +|||||++.
T Consensus 86 ~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGTsR~~~- 163 (484)
T PLN02564 86 DEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGTSRGGH- 163 (484)
T ss_pred cceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eeccCCCcc-
Confidence 348999999999999999999999998765556689999999999999999999999999999999997 999999865
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEM 252 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~ 252 (566)
++++++++|++++||+||+||||||+++|+.|+++++++|++++||||||||||||.++| +|||||||+++++++
T Consensus 164 ---~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD--~T~GFdTAv~~~~~a 238 (484)
T PLN02564 164 ---DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQRA 238 (484)
T ss_pred ---hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcc--cCCCHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999877 899999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhc-CCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEE
Q 008424 253 IGNVMIDARSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVIL 331 (566)
Q Consensus 253 I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt-~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVl 331 (566)
|++++.||.|++++|+|||+|||+|||||+++||++ +||+|||||.++ +|++ ...+++.|++|++. ++|+||+
T Consensus 239 I~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf----~le~-~~~ll~~i~~rl~~-~~~~VIV 312 (484)
T PLN02564 239 INAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPF----YLEG-KGGLFEFIEKRLKE-NGHMVIV 312 (484)
T ss_pred HHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCC----Ccch-HHHHHHHHHHHHhc-cCCEEEE
Confidence 999999999998889999999999999999999999 699999999986 3442 23566667888877 7899999
Q ss_pred EeCCCCC-CchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHH
Q 008424 332 IPEGLID-FIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLI 410 (566)
Q Consensus 332 IpEGl~e-~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~ 410 (566)
|+||+.. ++++ + .+. ...+|++||+++.++ ..+|+
T Consensus 313 VAEGagq~~~~~------~----------------------------------~~~--~~~~Da~Gn~~l~di--g~~La 348 (484)
T PLN02564 313 VAEGAGQDLIAE------S----------------------------------MES--SDLQDASGNKLLLDV--GLWLS 348 (484)
T ss_pred EeCCCccchhhh------h----------------------------------hcc--cccccccCCcccCcH--HHHHH
Confidence 9999843 2111 0 000 124799999999987 68899
Q ss_pred HHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEec
Q 008424 411 QMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSG 490 (566)
Q Consensus 411 ~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~ 490 (566)
+.|++++.+++. ..+++++..+||+|||+.|+++|+.||+.||..||+++++|+||+|+++.|. +...
T Consensus 349 ~~I~~~~~~~~~-----~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~mVg~~~~-------~~~~ 416 (484)
T PLN02564 349 QKIKDHFTKVKK-----MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNG-------RHAY 416 (484)
T ss_pred HHHHHHhhhccc-----CCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEE
Confidence 999888854432 2467888999999999999999999999999999999999999999999997 3778
Q ss_pred cchHHHHhHHHhcCCCcceeeecccccCChhhHHHHHh
Q 008424 491 TALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSM 528 (566)
Q Consensus 491 vPl~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~ 528 (566)
+||..++.. +..|++++..|......
T Consensus 417 vPi~~~~~~------------~~~v~~~~~~w~~~l~~ 442 (484)
T PLN02564 417 IPFYRITEK------------QNKVVITDRMWARLLSS 442 (484)
T ss_pred EEHHHHhcc------------CCccCCChHHHHHHHHH
Confidence 999988752 33357777777655443
No 16
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=7.6e-77 Score=633.71 Aligned_cols=355 Identities=21% Similarity=0.281 Sum_probs=308.8
Q ss_pred CCeEEEecCCCCccCCCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCC-EEEEEccChhhhcCCC--EEecCcccc
Q 008424 76 QPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGS-VLYGFRGGPAGIMKCK--YVELTSNYI 152 (566)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~-~v~Gf~~G~~GLl~~~--~~eLt~~~v 152 (566)
+..+.|.|.+ +|||||||||+|||||+||+++++.+. ..+. +||||++||+||++++ .++|+++.+
T Consensus 44 r~~~~~~p~~---------~rIaIltsGGdaPGmNa~Iravv~~a~--~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v 112 (411)
T PLN02884 44 RKKIYFEPEE---------VKAAIVTCGGLCPGLNDVIRQIVFTLE--IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVV 112 (411)
T ss_pred ceeEEeCCcc---------eEEEEEcCCCCCccHhHHHHHHHHHHH--HcCCcEEEEEccCHHHHhCCCceeeecCHHHH
Confidence 4567777663 899999999999999999999999864 3366 8999999999999999 677789999
Q ss_pred cchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 153 YPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 153 ~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+.+.++||+ +|||||+++ .+++++++|++++||+||+||||||+++|.+|+++++++|++++||||||||||||.
T Consensus 113 ~~i~~~GGt-~LGtsR~~~----~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 113 QNIHLSGGS-LLGVSRGGA----KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDIL 187 (411)
T ss_pred HHHHhCCCc-eeccCCCCc----cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCc
Confidence 999999997 999999987 488999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcC-CcEEEeCCchhhhhcchHhHHH
Q 008424 233 CKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTD 311 (566)
Q Consensus 233 ~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~-pnivlIpEe~~~~~~tL~~v~~ 311 (566)
++| +|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++||+++ ||+|||||.++.. +-.+
T Consensus 188 ~tD--~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~-----~~~~ 260 (411)
T PLN02884 188 LMD--KTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTL-----DGPN 260 (411)
T ss_pred Ccc--cCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCc-----ccHH
Confidence 988 8999999999999999999999999666799999999999999999999998 9999999998742 1135
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhc
Q 008424 312 YIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLE 391 (566)
Q Consensus 312 ~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 391 (566)
.+++.|++|++ +++|++|+|+||+...+.+. ...
T Consensus 261 ~~~~~i~~~~~-~k~~~iIVVAEG~g~~~~~~---------------------------------------------~~~ 294 (411)
T PLN02884 261 GVLRHLEHLIE-TKGSAVVCVAEGAGQDLLQK---------------------------------------------TNA 294 (411)
T ss_pred HHHHHHHHHHh-cCCcEEEEEecccccccccc---------------------------------------------ccc
Confidence 66777787776 89999999999985432210 014
Q ss_pred cCCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCc
Q 008424 392 RDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTG 471 (566)
Q Consensus 392 rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG 471 (566)
+|++||++++++ .+.|+++|++++++.. ..+++++..+||+|||+.|+.+|+.||+.||..|++++.+|.||
T Consensus 295 ~Da~G~~~l~~~--~~~La~~i~~~~~~~g------~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg 366 (411)
T PLN02884 295 TDASGNPVLGDI--GVHLQQEIKKHFKDIG------VPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSG 366 (411)
T ss_pred ccccCCcccCcH--HHHHHHHHHHHhhccC------CCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 699999999976 5668888887776432 24688999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCccceEEeccchHHHHhHHHhcCCCcceeeecccccCChhhHHHH
Q 008424 472 LISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFV 526 (566)
Q Consensus 472 ~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~ 526 (566)
+|++++|. ++..+||.++++. +..||.+|..|+.+.
T Consensus 367 ~mV~l~~~-------~~~~vpl~~v~~~------------~k~vd~~~~~~~~~~ 402 (411)
T PLN02884 367 ITVGICNT-------HYVYLPIPEVIAY------------PRRVDPNSRMWHRCL 402 (411)
T ss_pred eEEEEECC-------EEEEEeHHHHhcC------------CCCCCCCcHHHHHHH
Confidence 99999995 5778999999853 345778888876553
No 17
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.5e-76 Score=613.93 Aligned_cols=300 Identities=30% Similarity=0.423 Sum_probs=272.8
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CCC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IET 173 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~~ 173 (566)
+||||++|||||||||++|+|+++++.. .+++||||++||+||+++++++|++++++.|+++||+ +|||+|++ +++
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS--EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH--CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcCC
Confidence 6999999999999999999999999654 4789999999999999999999999999999999997 99999986 567
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I 253 (566)
++++++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd--~s~Gf~TA~~~~~~~i 150 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTD--YTIGFDTALNTAVEAI 150 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCc--cCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999974 6899999999999999887 8999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008424 254 GNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333 (566)
Q Consensus 254 ~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIp 333 (566)
++|+.||.|++ +|||||+|||+||||||+||||++||+|||||+++ + ++++++.|++|++.|++|++|++|
T Consensus 151 ~~l~~~a~s~~-rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~----~----~~~l~~~i~~r~~~g~~~~vivvs 221 (320)
T PRK03202 151 DRLRDTASSHE-RVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPF----D----IEELCAKIKKGRERGKKHAIIVVA 221 (320)
T ss_pred HHHHHHHhccC-CEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCC----C----HHHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999998875 58999999999999999999999999999999975 3 467778889999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHH
Q 008424 334 EGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMV 413 (566)
Q Consensus 334 EGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV 413 (566)
||+.+ . ..|++++
T Consensus 222 Eg~~~--~-----------------------------------------------------------------~~l~~~i 234 (320)
T PRK03202 222 EGVMP--A-----------------------------------------------------------------EELAKEI 234 (320)
T ss_pred CCCCC--H-----------------------------------------------------------------HHHHHHH
Confidence 99853 0 0134444
Q ss_pred HHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccch
Q 008424 414 ETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493 (566)
Q Consensus 414 ~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl 493 (566)
++++ ++++|+..+||.|||+.||+||+.+|++||..|++++.+|.+|+|+++++. ++..+||
T Consensus 235 ~~~~-----------~~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~-------~~~~vpl 296 (320)
T PRK03202 235 EERT-----------GLETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNN-------KIVHVPI 296 (320)
T ss_pred HHHh-----------CCceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEEeH
Confidence 4444 267789999999999999999999999999999999999999999999997 4778999
Q ss_pred HHHH-hH
Q 008424 494 TALM-DV 499 (566)
Q Consensus 494 ~~~~-~~ 499 (566)
.+++ +.
T Consensus 297 ~~v~~~~ 303 (320)
T PRK03202 297 EEAVENM 303 (320)
T ss_pred HHHHhcC
Confidence 9998 53
No 18
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=8.8e-76 Score=629.43 Aligned_cols=349 Identities=26% Similarity=0.341 Sum_probs=306.4
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcC---CCEEecCcccccchhccCCccccccCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK---CKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+||||++|||+|||||+||++++.++...+...+||||++||+||++ +++++||++.++.|+++||+ +|||||.+
T Consensus 80 ~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGT-iLGTsR~~ 158 (443)
T PRK06830 80 KVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT-ILGSSRGP 158 (443)
T ss_pred ccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCc-cccCCCCc
Confidence 489999999999999999999999998665556899999999999998 89999999999999999997 99999976
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~s 250 (566)
+++++++++|++++||+||+||||||+++|..|+|+++++|++++|||||||||||++++| +|||||||+++++
T Consensus 159 ----~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td--~S~GFdTAv~~a~ 232 (443)
T PRK06830 159 ----QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQ--KSFGFETAVEKAT 232 (443)
T ss_pred ----hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcc--cCCCHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999877 9999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhc-CCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEE
Q 008424 251 EMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGV 329 (566)
Q Consensus 251 e~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt-~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gv 329 (566)
++|++++.||.|++++|++||+|||+|||||+++||++ +||+|||||.++ +|+. ...+++.|++|++. ++|+|
T Consensus 233 ~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f----~l~~-~~~ll~~l~~r~~~-~~~~V 306 (443)
T PRK06830 233 EAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPF----DLEG-PNGLLAALEKRLAE-RGHAV 306 (443)
T ss_pred HHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCC----Cchh-HHHHHHHHHHHHHh-CCceE
Confidence 99999999999998889999999999999999999999 799999999996 4442 24666778888766 89999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHH
Q 008424 330 ILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKML 409 (566)
Q Consensus 330 VlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL 409 (566)
|||+||+...+.+ . ...+|++||+++.++ ..+|
T Consensus 307 IVVAEGag~~l~~------------------------------------~---------~~~~Da~gn~~l~~i--g~~L 339 (443)
T PRK06830 307 IVVAEGAGQELFD------------------------------------D---------TGETDASGNPKLGDI--GLFL 339 (443)
T ss_pred EEEecCccccccc------------------------------------c---------cccccccCCcccccH--HHHH
Confidence 9999998542211 0 124799999999986 6788
Q ss_pred HHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEe
Q 008424 410 IQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVS 489 (566)
Q Consensus 410 ~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~ 489 (566)
++.++++++++. ..++.+...+||+|||+.||++|+.||+.||..|++++++|+||+|++++|. ++.
T Consensus 340 ~~~i~~~~~~~~------~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~-------~~~ 406 (443)
T PRK06830 340 KDRIKEYFKARG------IPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNN-------RFV 406 (443)
T ss_pred HHHHHHHhcccC------CceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-------EEE
Confidence 888888775442 1356677899999999999999999999999999999999999999999987 578
Q ss_pred ccchHHHHhHHHhcCCCcceeeecccccCChhhHHHHH
Q 008424 490 GTALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFVS 527 (566)
Q Consensus 490 ~vPl~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~ 527 (566)
.+||..+++. +..||.+|..++...+
T Consensus 407 ~vPl~~v~~~------------~k~vd~~~~~w~~~l~ 432 (443)
T PRK06830 407 HLPIDLAVSK------------RKKVNPEGDLWRSVLE 432 (443)
T ss_pred EEeHHHHhcc------------CCCCCCccHHHHHHHH
Confidence 8999998853 2346777777665443
No 19
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=1.2e-75 Score=603.87 Aligned_cols=299 Identities=30% Similarity=0.415 Sum_probs=266.7
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CCCH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IETP 174 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~~~ 174 (566)
||||++|||||||||++|+++++++.. .+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +.++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT-ILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc-eeccCCCCccCCH
Confidence 699999999999999999999998754 4789999999999999999999999999999999998 99999986 5678
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHH
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIG 254 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ 254 (566)
+++++++++|++++||+||+||||||+++|+.|+|++ +++|||||||||||++++| +|||||||+++++++|+
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td--~s~GfdTA~~~~~~~i~ 150 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTD--YTIGFDTALNTIIDAVD 150 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcc--cCcChhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999974 6899999999999999887 89999999999999999
Q ss_pred HHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 008424 255 NVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPE 334 (566)
Q Consensus 255 ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpE 334 (566)
+++.+|.|++ +|||||+|||+|||||++||||++||+|||||+++ ++ +.+++.|++|+++|++|++|+++|
T Consensus 151 ~i~~ta~s~~-rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~----~~----~~l~~~i~~r~~~g~~~~iIvvaE 221 (301)
T TIGR02482 151 KIRDTATSHE-RAFVIEVMGRHAGDLALYSGIATGAEIIIIPEFDY----DI----DELIQRLKEQHEAGKKHSIIIVAE 221 (301)
T ss_pred HHHHHhhcCC-CEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCC----CH----HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987787765 58999999999999999999999999999999985 33 566788899999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHH
Q 008424 335 GLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVE 414 (566)
Q Consensus 335 Gl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~ 414 (566)
|+... . ...|+++++
T Consensus 222 G~~~~--~---------------------------------------------------------------~~~l~~~l~ 236 (301)
T TIGR02482 222 GNIVG--S---------------------------------------------------------------AKEVAKKIE 236 (301)
T ss_pred CCcCC--c---------------------------------------------------------------HHHHHHHHH
Confidence 95310 0 012344443
Q ss_pred HHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccchH
Q 008424 415 TELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALT 494 (566)
Q Consensus 415 ~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl~ 494 (566)
+++ .+++|...+||.|||+.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+||.
T Consensus 237 ~~~-----------g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~ 298 (301)
T TIGR02482 237 EAT-----------GIETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNK-------IVTHPIE 298 (301)
T ss_pred Hhc-----------CCeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEeeHH
Confidence 322 3677889999999999999999999999999999999999999999999973 6678887
Q ss_pred HH
Q 008424 495 AL 496 (566)
Q Consensus 495 ~~ 496 (566)
++
T Consensus 299 ~~ 300 (301)
T TIGR02482 299 EA 300 (301)
T ss_pred Hh
Confidence 65
No 20
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.4e-75 Score=617.70 Aligned_cols=351 Identities=21% Similarity=0.227 Sum_probs=299.2
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcc---cccchhccCCccccccCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN---YIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~---~v~~~~n~GG~~~LGSsR~k 170 (566)
.+||||++|||||||||++|+++++++...+++++||||++||+||+++++++|++. .++.++++||+ +|||||++
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt-~LGtsR~~ 81 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGS-PIGNSRVK 81 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCc-eeccCCCC
Confidence 479999999999999999999999987666678999999999999999999999985 34559999998 99999998
Q ss_pred CC-------------CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCC
Q 008424 171 IE-------------TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVP 237 (566)
Q Consensus 171 ~~-------------~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie 237 (566)
+. .++.+++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||.++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td-- 159 (403)
T PRK06555 82 LTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIR-- 159 (403)
T ss_pred ccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCcc--
Confidence 62 256789999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhh--------------------cCCcEEEeCC
Q 008424 238 ASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQ--------------------THPNITIIGE 297 (566)
Q Consensus 238 ~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLq--------------------t~pnivlIpE 297 (566)
+|||||||+++++++|++|+.|+.|++++++|||||||+|||||+.+||+ ++||+|||||
T Consensus 160 ~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE 239 (403)
T PRK06555 160 QSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPE 239 (403)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccC
Confidence 89999999999999999999999999987666699999999999999999 7899999999
Q ss_pred chhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHh
Q 008424 298 EVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLF 377 (566)
Q Consensus 298 e~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf 377 (566)
.+++ + +.+++.|+++++. ++|++|+|+||+.+-++. +++ .++++
T Consensus 240 ~~~~----~----e~~~~~ik~~~~~-k~~~iIvVaEG~~~~~~~-----~~~---------~~~g~------------- 283 (403)
T PRK06555 240 MAFD----L----EAEAERLKAVMDE-VGNVNIFLSEGAGLDAIV-----AEM---------EAAGE------------- 283 (403)
T ss_pred CCCC----H----HHHHHHHHHHHHh-CCCEEEEEeCCCCcccch-----hhh---------hhccC-------------
Confidence 9863 3 5567777777766 999999999998542211 000 01111
Q ss_pred hhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHHHHHHHhhhccCCcccccc-ccccccCccccCCCCCHHHHHHHHH
Q 008424 378 EFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFK-GQSHFFGYEGRCGLPTNFDATYCYA 456 (566)
Q Consensus 378 ~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~-~~~~~lGy~~R~~~PS~fD~~~a~~ 456 (566)
...+|+|||+++..++...+|++.|++++. ++ +|...+||+|||+.||.||+.||++
T Consensus 284 -----------~~~~Da~G~~~l~~~~~g~~la~~i~~~~g-----------~e~~r~~~lGy~qRgg~psa~Dr~la~~ 341 (403)
T PRK06555 284 -----------EVKRDAFGHVKLDTINPGAWFAKQFAELLG-----------AEKVMVQKSGYFARSAPANAEDLRLIKS 341 (403)
T ss_pred -----------ccccccccceecCCCcHHHHHHHHHHHHhC-----------CCceEEecCChhhcCCCCCHHHHHHHHH
Confidence 125799999999998888888888877764 32 5778999999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEe---cCCCCCccceEEeccchHHHHhHHHhcCCCcceeeecccccCChhhHHHH
Q 008424 457 LGYGAGALLHSGKTGLISSV---GNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFV 526 (566)
Q Consensus 457 LG~~Av~li~~g~tG~mv~i---~nl~~~~~~w~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~ 526 (566)
||..|++++.+|.+| |+++ +|. ++..+||.+++. + ..|+.+++.|..+.
T Consensus 342 lG~~AV~~~~~G~sg-~v~~~~~~~g-------~~~~vp~~~~~~--~-----------k~~~~~~~~~~~~~ 393 (403)
T PRK06555 342 MVDLAVECALRGVSG-VIGHDEEQGG-------KLRAIEFPRIKG--G-----------KAFDTSTPWFTELL 393 (403)
T ss_pred HHHHHHHHHHCCCCC-eEEEEeeeCC-------EEEEEEHHHHhc--C-----------CCCCCCHHHHHHHH
Confidence 999999999999999 5666 665 477899998764 1 13666777766543
No 21
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4e-75 Score=613.84 Aligned_cols=340 Identities=25% Similarity=0.379 Sum_probs=295.4
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCC--CEEecCcccccchhccCCccccccCCC-C
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRD-K 170 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGSsR~-k 170 (566)
.+||||++|||||||||++|+|+++++.. +++.+||||++||.||+++ ++++|++++++.|.++||+ +|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~-~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~~ 81 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARG-TYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT-ILGTTNKGD 81 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc-eeccCCCCC
Confidence 58999999999999999999999999643 3478999999999999999 9999999999999999998 9999973 2
Q ss_pred -CC-------CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCCh
Q 008424 171 -IE-------TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGF 242 (566)
Q Consensus 171 -~~-------~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GF 242 (566)
+. .++.+++++++|++++||+||+||||||++.|+.|++. .+++||||||||||||+++| +||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td--~t~Gf 154 (360)
T PRK14071 82 PFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATE--VSIGF 154 (360)
T ss_pred ccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcc--cCcCh
Confidence 11 25678999999999999999999999999999999873 26899999999999999988 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHH
Q 008424 243 DTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAE 322 (566)
Q Consensus 243 dTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~ 322 (566)
|||+++++++|++++.+|.|+++ |+|||||||+|||||+++||+++||+|||||.++ ++ +.+++.|++|++
T Consensus 155 ~TA~~~~~~~id~i~~ta~s~~r-v~ivEvMGR~~G~LAl~~~la~ga~~iliPE~~~----~~----~~l~~~i~~~~~ 225 (360)
T PRK14071 155 DTAVNIATEALDRLHFTAASHNR-VMILEVMGRDAGHIALAAGIAGGADVILIPEIPY----TL----ENVCKKIRERQE 225 (360)
T ss_pred hHHHHHHHHHHHHHHhhhcccCC-EEEEEECCCCccHHHHHhHhhcCCCEEEECCCCC----CH----HHHHHHHHHHHH
Confidence 99999999999999999998765 7999999999999999999999999999999975 43 556777889999
Q ss_pred cCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccch
Q 008424 323 LGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAK 402 (566)
Q Consensus 323 ~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~ 402 (566)
++++|++|+|+||+.+ +++.. ..++|++||+++++
T Consensus 226 ~~~~~~iivvsEG~~~----------------------~~g~~-----------------------~~~~d~~g~~~~~~ 260 (360)
T PRK14071 226 EGKNFCLVVVSEAVRT----------------------EEGEQ-----------------------VTKTQALGEDRYGG 260 (360)
T ss_pred cCCCeEEEEEcCCCcc----------------------ccccc-----------------------ccccccccccccCc
Confidence 9999999999999853 11111 12369999999988
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCC
Q 008424 403 IETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAP 482 (566)
Q Consensus 403 i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~ 482 (566)
+ .++|+++|++++ ++++|...+||.|||+.||+||+.+|++||..|++++.+|+||+|+++++.
T Consensus 261 ~--~~~l~~~i~~~~-----------g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~t~~mv~~~~~--- 324 (360)
T PRK14071 261 I--GQYLAEQIAERT-----------GAETRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDLIAQGKFDRMVAWQNR--- 324 (360)
T ss_pred H--HHHHHHHHHHhc-----------CCCeeEEecChhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC---
Confidence 5 577777776654 256788899999999999999999999999999999999999999999987
Q ss_pred ccceEEeccchHHHHhHHHhcCCCcceeeecccccCChhhHHHHHh
Q 008424 483 VEEWTVSGTALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSM 528 (566)
Q Consensus 483 ~~~w~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~ 528 (566)
++..+||.++++. +..||.+|..|+.....
T Consensus 325 ----~~~~vpl~~v~~~------------~~~v~~~~~~~~~~~~~ 354 (360)
T PRK14071 325 ----QVVSVPIAEAIAT------------YRAVDPEGTLVKTARGL 354 (360)
T ss_pred ----EEEEEeHHHHhcC------------CCCCCccHHHHHHHHHH
Confidence 5778999999862 34577777777765433
No 22
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=5.6e-75 Score=603.05 Aligned_cols=301 Identities=30% Similarity=0.420 Sum_probs=269.5
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CCC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IET 173 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~~ 173 (566)
+||||++|||||||||++|+++++++. +.+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +.+
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT-FLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe-eeccCCCCccCC
Confidence 589999999999999999999999864 45789999999999999999999999999999999998 99999984 667
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I 253 (566)
++++++++++|++++||+|++||||||+++|+.|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd--~t~Gf~TA~~~~~~~i 149 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTD--YTIGFDTALNTVVEAI 149 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCc--cCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999986 5899999999999999988 8999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008424 254 GNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333 (566)
Q Consensus 254 ~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIp 333 (566)
++++.++.|+ ++|||||+|||+|||||++|||+++||+|||||+++ ++ +++++.|++|+++|++|++|+++
T Consensus 150 ~~i~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~~~----~~----~~~~~~i~~~~~~g~~~~vivva 220 (317)
T cd00763 150 DRIRDTSSSH-QRISVVEVMGRHCGDIALAAGIAGGAEFIVIPEAEF----DR----EEVANRIKAGIERGKKHAIVVVA 220 (317)
T ss_pred HHHHHHHhcC-CCEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998666665 568999999999999999999999999999999975 44 45566678888889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHH
Q 008424 334 EGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMV 413 (566)
Q Consensus 334 EGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV 413 (566)
||+.+- ..|++++
T Consensus 221 EG~~~~-------------------------------------------------------------------~~l~~~l 233 (317)
T cd00763 221 EGVYDV-------------------------------------------------------------------DELAKEI 233 (317)
T ss_pred CCCCCH-------------------------------------------------------------------HHHHHHH
Confidence 997420 0134444
Q ss_pred HHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccch
Q 008424 414 ETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493 (566)
Q Consensus 414 ~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl 493 (566)
++++ .+++|...+||.|||+.||+||+.+|++||..|++++.+|++|+|+++++. ++..+||
T Consensus 234 ~~~~-----------g~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~-------~~~~~pl 295 (317)
T cd00763 234 EEAT-----------GFETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNE-------QLVHHDI 295 (317)
T ss_pred HHHh-----------CCCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEecH
Confidence 4443 256778899999999999999999999999999999999999999999987 5788999
Q ss_pred HHHHhHH
Q 008424 494 TALMDVE 500 (566)
Q Consensus 494 ~~~~~~e 500 (566)
.++++.+
T Consensus 296 ~~~~~~~ 302 (317)
T cd00763 296 IDAIENM 302 (317)
T ss_pred HHHhhCC
Confidence 9998754
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.2e-71 Score=630.50 Aligned_cols=352 Identities=21% Similarity=0.284 Sum_probs=302.6
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCC--CEEecCcccccchhccCCccccccCCCC-C
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRDK-I 171 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~ 171 (566)
+||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++|++++++.|+++||+ +|||+|++ +
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a--~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~~~ 77 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMA--IYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT-IIGTARCKEF 77 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHH--HHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc-eecCCCCCcc
Confidence 58999999999999999999999985 45689999999999999999 9999999999999999997 99999997 5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH-----------------HhhcCCCceEEEeeccccCCCCCC
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH-----------------FRSKNLKTLVMGCPKTIDGDLKCK 234 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~-----------------~~~~~~~i~VIGVPKTIDNDL~~~ 234 (566)
++++..++++++|++++||+||+||||||+++|..|+++ .++++.+++|||||||||||+++|
T Consensus 78 ~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 667888999999999999999999999999999987763 345566899999999999999998
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHH
Q 008424 235 EVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIV 314 (566)
Q Consensus 235 ~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~ 314 (566)
| +|||||||+++++++|++++.+|.|++| +||||||||+||||||++|||++||+|||||+++... +.++||
T Consensus 158 d--~TiGfdTA~~~i~~aid~i~~ta~Sh~R-~fvvEvMGR~~G~LAl~aalA~gad~iliPE~~~~~~-----~~~~i~ 229 (745)
T TIGR02478 158 D--MTIGADSALHRICEAIDAISSTAQSHQR-AFVVEVMGRHCGYLALMAAIATGADYVFIPERPPEEG-----WEDQLC 229 (745)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHhhhhccCC-EEEEEEcCccccHHHHHHHhccCCCEEEecCCCCCch-----HHHHHH
Confidence 8 8999999999999999999999999765 7899999999999999999999999999999997543 678889
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCC
Q 008424 315 DIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDP 394 (566)
Q Consensus 315 ~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~ 394 (566)
+.+++++..|++|+||+|+||+.+ .
T Consensus 230 ~~l~~~~~~gk~~~iIvvaEG~~d-------------------------------------------------------~ 254 (745)
T TIGR02478 230 HKLKRNRKAGKRKNIVIVAEGAID-------------------------------------------------------R 254 (745)
T ss_pred HHHHHHHHcCCCcEEEEEeCCccc-------------------------------------------------------c
Confidence 999999999999999999999853 2
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---c
Q 008424 395 HGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKT---G 471 (566)
Q Consensus 395 ~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~t---G 471 (566)
+||... ...|++++++++ ++++|...|||.||||.||+||+.+|+.||..|++++.+|.+ |
T Consensus 255 ~g~~i~-----~~~l~~~l~~~~-----------g~~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~~~~~g~~~~~~ 318 (745)
T TIGR02478 255 DLNPIT-----SEDVKDVLVERL-----------GLDTRITVLGHVQRGGAPSAYDRILATRQGVEAVLAVLESTPETPS 318 (745)
T ss_pred cCCccc-----HHHHHHHHHHhc-----------CCceEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 233211 123455554443 367889999999999999999999999999999999999987 9
Q ss_pred eEEEecCCCCCccceEEeccchHHHHhHHHhcCCCcceee---ecccccCChhhHHHHHhhhcccccCc
Q 008424 472 LISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIK---KAMVELDGAPFKKFVSMRDEWALNNR 537 (566)
Q Consensus 472 ~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~~~p~i~---~~~V~l~g~~f~~~~~~r~~w~~~d~ 537 (566)
+|+++++ |++..+||.++++.+|...+. ++. ..-++|.|..|...-..-..-...+.
T Consensus 319 ~mv~~~~-------~~~~~~pl~~~~~~~k~v~~~--~~~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 319 PVISLRG-------NKIVRKPLVEAVAQTKTVAKA--IKEKRFAEAMRLRGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred EEEEEEC-------CEEEEEeHHHHHhhcCCCCHH--HHhccHHHHHHhcCHHHHHHHHHHHhhhccCC
Confidence 9999998 468899999999877654422 222 33477899999877655555544443
No 24
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=4.3e-71 Score=566.63 Aligned_cols=281 Identities=36% Similarity=0.513 Sum_probs=247.7
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CCC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IET 173 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~~ 173 (566)
|||||++|||||||||++|+++++++. ..+++||||++||+||+++++++|++++++.|+++||+ +|||+|++ +.+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~--~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI--RRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH--HTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH--hcCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccc
Confidence 699999999999999999999999864 56899999999999999999999999999999999998 99999987 567
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I 253 (566)
++.+++++++|++++||+||+||||||+++|+.|+|++. ++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd--~siGf~TA~~~~~~~i 150 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTD--YSIGFDTAVNYIAEAI 150 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSS--S-BTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCC--CCcccCchhHHHHHHH
Confidence 788999999999999999999999999999999998764 899999999999999987 8999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008424 254 GNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333 (566)
Q Consensus 254 ~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIp 333 (566)
++++.|+.|++ +|||||+|||+|||||++||||++||+|||||++. .++.+++.|++|.+++|+|++|+++
T Consensus 151 ~~i~~~a~s~~-rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~~--------~~~~~~~~i~~~~~~~k~~~iVvvs 221 (282)
T PF00365_consen 151 DNIKTTARSHN-RVFIVEVMGRNAGWLALAAALATGADLILIPEEPF--------DLDELLDDIKKRYERGKRYGIVVVS 221 (282)
T ss_dssp HHHHHHHHHST-EEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSHH--------HHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHhhcccC-CceEEEeCCCCcCHHHHHHHhccCCCEEEEecccc--------chHHHHHHhhhhhcccCceEEEEec
Confidence 99999998864 68999999999999999999999999999999984 4688889999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHH
Q 008424 334 EGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMV 413 (566)
Q Consensus 334 EGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV 413 (566)
||+.+..|- ..+++
T Consensus 222 EG~~~~~~i------------------------------------------------------------------~~~~~ 235 (282)
T PF00365_consen 222 EGAKDGQPI------------------------------------------------------------------SSEFI 235 (282)
T ss_dssp TTSBSSHBH------------------------------------------------------------------HHHHH
T ss_pred ccccccccc------------------------------------------------------------------ccccc
Confidence 999752110 01112
Q ss_pred HHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 008424 414 ETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHS 467 (566)
Q Consensus 414 ~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~ 467 (566)
++.++++ ..+++|...|||.||||.||+|||.+|..||..|++++.+
T Consensus 236 ~~~~~~~-------~~~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 236 KELLEEG-------LGFDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp HHHHHHT-------TTSEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccc-------cccceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 2222221 2478899999999999999999999999999999999864
No 25
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.5e-70 Score=619.19 Aligned_cols=353 Identities=22% Similarity=0.268 Sum_probs=299.6
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCC--CEEecCcccccchhccCCccccccCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
..+||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++++|++++.|.++||+ +|||+|++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a--~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT-~LGTsR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMG--IYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT-IIGSARCK 78 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHH--HHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC-cccCCCCC
Confidence 3589999999999999999999999984 55689999999999999999 8999999999999999997 99999997
Q ss_pred -CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHH-----------------HHHhhcCCCceEEEeeccccCCCC
Q 008424 171 -IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLA-----------------EHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 171 -~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~La-----------------e~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+.+.+++.+++++|++++||+||+||||||+++|..|+ ++..+++..++|||||||||||++
T Consensus 79 ~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 56678999999999999999999999999999999764 233345568999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHH
Q 008424 233 CKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY 312 (566)
Q Consensus 233 ~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~ 312 (566)
+|| +|||||||+++++++|++|+.||.|++| +||||||||+||||||++|||++||+|||||.++. .++.++
T Consensus 159 gTD--~TiGfdTAl~~i~eaId~i~~tA~Sh~R-~fVVEvMGR~~G~LAl~aglA~gAd~ilIPE~p~~-----~~~~~~ 230 (762)
T cd00764 159 GTD--MTIGTDSALHRICEVVDAITTTAQSHQR-TFVLEVMGRHCGYLALVSGLATGADWIFIPERPPE-----DGWEDQ 230 (762)
T ss_pred CCc--CCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCCCchHHHHHHHhccCCCEEEecCCCCc-----hhHHHH
Confidence 988 8999999999999999999999999876 79999999999999999999999999999999965 467899
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhcc
Q 008424 313 IVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLER 392 (566)
Q Consensus 313 i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 392 (566)
||+.+++|+..||+|++|+|+||+.+.
T Consensus 231 i~~~l~~~~~~gk~~~iIVVaEGa~d~----------------------------------------------------- 257 (762)
T cd00764 231 MCRRLSEHRSRGKRLNIIIVAEGAIDD----------------------------------------------------- 257 (762)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCccc-----------------------------------------------------
Confidence 999999999999999999999998631
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 008424 393 DPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKT-- 470 (566)
Q Consensus 393 D~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~t-- 470 (566)
.|+.. ++..|++.+++++ .+++|...+||.||||.||+||+.||+.||..|++++.+|.+
T Consensus 258 --~g~~i-----~~~~l~~~l~~~~-----------g~d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~AV~~l~~g~~~~ 319 (762)
T cd00764 258 --QLKPI-----TSEDVKDLVVERL-----------GLDTRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDT 319 (762)
T ss_pred --cCCCc-----cHHHHHHHHHHhc-----------CCCeeEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 12211 1223454444443 378899999999999999999999999999999999999986
Q ss_pred -ceEEEecCCCCCccceEEeccchHHHHhHHHhcCCC---cceeeecccccCChhhHHHHHhhhcccccC
Q 008424 471 -GLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKF---KPVIKKAMVELDGAPFKKFVSMRDEWALNN 536 (566)
Q Consensus 471 -G~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~~---~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d 536 (566)
++|+++++. ++..+||.++++..+...+. +.+ ..-++|.|..|...-+....-...+
T Consensus 320 ~~~~i~~~~~-------~i~~~pl~e~v~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~~~~~~~~~~~~ 380 (762)
T cd00764 320 PACVVSLNGN-------KAVRLPLMECVQLTKDVQKAMDEKRF--DEAAALRGKSFDKNWNLYKLLAIEL 380 (762)
T ss_pred CCEEEEEECC-------EEEEEEHHHHHhhccchhhhhhhhhH--HHHHHhcchhHHHHHHHHHhccccC
Confidence 899999997 47789999998765543221 111 2336788888876655544444333
No 26
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.3e-69 Score=609.83 Aligned_cols=329 Identities=21% Similarity=0.275 Sum_probs=289.5
Q ss_pred CCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 91 SDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
...++||||++|||||||||++|+|+++++ .+.+.+||||++||+||+++++.+|++.+++.|+++||+ +|||+|..
T Consensus 386 ~~~~~rIaIltsGG~apGmNaair~vv~~a--~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAPAGGMNAATRSAVRYA--IARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCCchhHHHHHHHHHHHH--HhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCC
Confidence 355689999999999999999999999985 446889999999999999999999999999999999998 99999985
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-CCCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
. ++++++++++|++++||+||+||||||+++|.+|+++..+. +.+++|||||||||||++++| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~t~GfdTA~~~~ 538 (745)
T TIGR02478 463 P--GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTE--YSLGSDTALNEI 538 (745)
T ss_pred c--hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--cCCCHHHHHHHH
Confidence 4 67899999999999999999999999999999999985543 367999999999999999888 899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcC-CCeE
Q 008424 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELG-YNYG 328 (566)
Q Consensus 250 se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~g-k~~g 328 (566)
+++|++++.+|.|++++|||||||||+|||||++||||++||+|||||+++ +++++.+.+.. +.+|...+ ++++
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~gad~iliPE~~~----~~~~l~~~v~~-i~~~~~~~~~~~~ 613 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGI----SLKDLQEDIEH-LKEKFAHGNRAGK 613 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcCCCEEEeCCCCC----CHHHHHHHHHH-HHHHHhcCCCCce
Confidence 999999999999998789999999999999999999999999999999974 67777766544 77888888 8999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHH
Q 008424 329 VILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKM 408 (566)
Q Consensus 329 vVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~l 408 (566)
+|+++||+.+.. +...
T Consensus 614 iiv~~Eg~~~~~----------------------------------------------------------------~~~~ 629 (745)
T TIGR02478 614 LILRNENASKNY----------------------------------------------------------------TTDF 629 (745)
T ss_pred EEEEeCCCccCC----------------------------------------------------------------CHHH
Confidence 999999974310 0123
Q ss_pred HHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcC------------CCceEEEe
Q 008424 409 LIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSG------------KTGLISSV 476 (566)
Q Consensus 409 L~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g------------~tG~mv~i 476 (566)
|+++++++++ ..|++|...|||.||||.||+||+.+|++||..|++++.+| .+|+|+++
T Consensus 630 l~~~i~~e~~---------~~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~ 700 (745)
T TIGR02478 630 IARIISEEAK---------GRFDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGI 700 (745)
T ss_pred HHHHHHHHhc---------CCCceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEE
Confidence 5666665542 25888999999999999999999999999999999999998 79999999
Q ss_pred cCCCCCccceEEeccchHHHHh----HHHhcCCCcceee
Q 008424 477 GNLAAPVEEWTVSGTALTALMD----VERRHGKFKPVIK 511 (566)
Q Consensus 477 ~nl~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~ 511 (566)
++.+ +..+||.++|+ ++.|.++..+|.+
T Consensus 701 ~~~~-------~~~~p~~~~~~~~~d~~~r~p~~~~w~~ 732 (745)
T TIGR02478 701 RGSN-------VLFTPVKGLLAKETDFEHRRPKNQWWLD 732 (745)
T ss_pred ECCE-------EEEEEHHHHHhhccCcccCCCCCchhhh
Confidence 9874 77799998653 6667788877763
No 27
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=7.1e-65 Score=573.10 Aligned_cols=328 Identities=19% Similarity=0.214 Sum_probs=281.4
Q ss_pred CCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 91 SDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
...++||||++|||||||||++|+++++++ ...+++||||++||+||+++++++|+|++++.|.++||+ +|||+|++
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~a--~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~ 462 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYG--LAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTL 462 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHHH--HHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCC
Confidence 345689999999999999999999999884 456899999999999999999999999999999999998 99999988
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-CCCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
+ ++++++++++|++++||+||+||||||+++|.+|+++..+. ..+++|||||||||||+++|| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd--~siGfdTAln~~ 538 (762)
T cd00764 463 P--KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTD--FSLGSDTALNAL 538 (762)
T ss_pred c--HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--CCCCHHHHHHHH
Confidence 6 57899999999999999999999999999999999986543 367999999999999999988 899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEE
Q 008424 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGV 329 (566)
Q Consensus 250 se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gv 329 (566)
+++|++|+.+|.|+++++||||||||+|||||+++||+++|++|||||++++.+. |..-++.+++.++++...|+.+.+
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~GAd~i~iPE~~~~~~~-l~~dv~~l~~~~~~~~~~g~~~~~ 617 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGADAAYVFEEPFNIRD-LQENVEHLTEKMKTTIGRGLVLRN 617 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcCCCEEEeCCCCCCHHH-HHHHHHHHHHHHHHHHhcCCeEee
Confidence 9999999999988887899999999999999999999999999999999864322 222256668888888889999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHH
Q 008424 330 ILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKML 409 (566)
Q Consensus 330 VlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL 409 (566)
++++||... ..+
T Consensus 618 ~~~se~~~~--------------------------------------------------------------------~~~ 629 (762)
T cd00764 618 EKCNENYTT--------------------------------------------------------------------VFT 629 (762)
T ss_pred eeeecCCcc--------------------------------------------------------------------ccH
Confidence 999998621 012
Q ss_pred HHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------CceEE
Q 008424 410 IQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK---------------TGLIS 474 (566)
Q Consensus 410 ~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~---------------tG~mv 474 (566)
+++++++++ +.|++|..+|||.||||.||+|||.+|++||..|++++.+.. +.+++
T Consensus 630 ~~~~~~~~~---------~~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~i 700 (762)
T cd00764 630 YELYSEEGK---------GVFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCVN 700 (762)
T ss_pred HHHHHHHHh---------cCCceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCceEEE
Confidence 233344442 248999999999999999999999999999999999999853 66788
Q ss_pred EecCCCCCccceEEeccchHHHHh--HHHhcCCCccee
Q 008424 475 SVGNLAAPVEEWTVSGTALTALMD--VERRHGKFKPVI 510 (566)
Q Consensus 475 ~i~nl~~~~~~w~~~~vPl~~~~~--~e~~~g~~~p~i 510 (566)
++++.. ....|+..|.. +++|.++..+|.
T Consensus 701 g~~~~~-------~~~~~~~~~~~~~~~~r~p~~~~w~ 731 (762)
T cd00764 701 GVKKYA-------VLFEPVEELKQTTFEHRIPKEQWWL 731 (762)
T ss_pred EEeCCE-------EEEeeHHHHHHhhhhcCCCcchhhH
Confidence 888764 44567766644 555677776665
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-58 Score=501.52 Aligned_cols=535 Identities=27% Similarity=0.254 Sum_probs=460.2
Q ss_pred cCcCCCHhhhhhhcCCCCCcccccCC--ceeecCCCCCCCCChhHHHhhCCcccCCC------eEEEecCCCCccCCCCC
Q 008424 23 VASVYSELQTSRIDHALPLPSVLKNP--FKIVDGPASSAAGNPDEIAKLFPNLFGQP------SALLVPNGADAVRSDEK 94 (566)
Q Consensus 23 ~~~~~s~~~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~i~~~fp~~~~~~------~~~~~~~~~~~~~~~~~ 94 (566)
..+.++++|-.|..|.|.+|..+.+. .....+......+..+.|.+.||++++.+ .....|.+ ...-..+-
T Consensus 42 g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e-~~~~~~el 120 (666)
T KOG2440|consen 42 GGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPRE-WIYLEEEL 120 (666)
T ss_pred cccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchh-ccccchHH
Confidence 33578899999999999999999876 44444445556788999999999998876 22222221 12223455
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHH--------hhCCCCEEEE---------EccChhhhcCCCEEecCcccccchhc
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQ--------DRAKGSVLYG---------FRGGPAGIMKCKYVELTSNYIYPYRN 157 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~--------~~~~~~~v~G---------f~~G~~GLl~~~~~eLt~~~v~~~~n 157 (566)
.+.|||++||+|||+|+||+|++-.+. -+.-++-+.+ +..|++|++...+.++.-...--+.+
T Consensus 121 vk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~i 200 (666)
T KOG2440|consen 121 VKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAI 200 (666)
T ss_pred hhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHh
Confidence 899999999999999999997765542 2222333333 56669999999987777655445555
Q ss_pred cCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCC
Q 008424 158 QGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVP 237 (566)
Q Consensus 158 ~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie 237 (566)
.+|+|+|...+.+++++||+.++++.+++.+++.+|||||++++++|..++|+++++.+++.|++||||||||++.-+..
T Consensus 201 a~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p 280 (666)
T KOG2440|consen 201 AGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVP 280 (666)
T ss_pred hcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCcc
Confidence 55556666666677779999999999999999999999999999999999999999999999999999999999987744
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHH
Q 008424 238 ASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDII 317 (566)
Q Consensus 238 ~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I 317 (566)
..|+|+|||+..+++|.+++.++.|+-++++|||+|||.|+|+|++|++|++++.+.+.+|....+.++.+....+++++
T Consensus 281 ~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~ 360 (666)
T KOG2440|consen 281 SAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVV 360 (666)
T ss_pred cccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhcc
Confidence 44444499999999999999999999999999999999999999999999999888888888888899999999999999
Q ss_pred HHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCC
Q 008424 318 CKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGN 397 (566)
Q Consensus 318 ~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~ 397 (566)
+.|.....+|+. +|++++.|.+..+.|.++.+.++.....+.++-+...++.+..+. +++|..+..++....+.+|+
T Consensus 361 ~~~~~~~p~~~~--~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~-d~~~~~~~~dv~~w~~~ggs 437 (666)
T KOG2440|consen 361 DPRAEQDPFYGE--IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAK-DALGELIWKDVGLWLSQGGS 437 (666)
T ss_pred ccccccCCCCce--eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhh-hhhhhhHHHHhhcccccCch
Confidence 999999999999 999999999999999999999886655555555777777776666 99999999999999999999
Q ss_pred cccchhhh-HHHHHHHHHHHHHhhhccCCccc-cccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEE
Q 008424 398 VQVAKIET-EKMLIQMVETELENRKQEGVNKG-QFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISS 475 (566)
Q Consensus 398 ~~ls~i~t-e~lL~~lV~~~L~~r~~~~~y~~-~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~ 475 (566)
.+..+++| |++..++|+.++.+|+..+.|.. .|.+..|+++|++|++.|+.||..||+..+..+-..-..+.++.+.+
T Consensus 438 ~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt 517 (666)
T KOG2440|consen 438 ALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDT 517 (666)
T ss_pred hheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccch
Confidence 99999997 89999999999999999888876 89999999999999999999999999999999887777889999999
Q ss_pred ecCCCCCccceEEeccchHHHHhHHHh--cCCC---------cceeeecccccCChhhHHHHHhhhcccccCcccCCccc
Q 008424 476 VGNLAAPVEEWTVSGTALTALMDVERR--HGKF---------KPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPI 544 (566)
Q Consensus 476 i~nl~~~~~~w~~~~vPl~~~~~~e~~--~g~~---------~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpi 544 (566)
..|...+..+|.....++++.+.++.+ .|.. .|.+.+++|.+.+.+|+.|.+.++.|++++.|.+|+|+
T Consensus 518 ~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l 597 (666)
T KOG2440|consen 518 ALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGL 597 (666)
T ss_pred hHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccccccccccccccccHHHHHHHHHHHHHHhhhcCCCce
Confidence 999999999999999999999887776 4554 89999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcceeeec
Q 008424 545 QFTGPTSGDVNHTLLLE 561 (566)
Q Consensus 545 q~~g~~~~~~~~tl~~e 561 (566)
||.+|.+|....|+.+|
T Consensus 598 ~~r~e~a~~~~~t~~~~ 614 (666)
T KOG2440|consen 598 QLRNEGADANYTTLFLE 614 (666)
T ss_pred EEeCCCcchhhhHHHHH
Confidence 99999999888888887
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=316.10 Aligned_cols=355 Identities=19% Similarity=0.237 Sum_probs=275.9
Q ss_pred EEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCC--EEecCcccccchhccCCccccccCCCC-CCCHH
Q 008424 99 VVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCK--YVELTSNYIYPYRNQGGFDMICSGRDK-IETPE 175 (566)
Q Consensus 99 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~--~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~~~e 175 (566)
|+||||++||||++++.+++. ..+.+.++|+++.||.||+++. +.+.+|+.++.|...||+ ++|+.|.+ +...+
T Consensus 1 v~tsggd~~gmnaavr~~vr~--~i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt-~~g~ar~~~f~~~~ 77 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRM--GIYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGT-LIGTARCKAFRGRE 77 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHh--ccccCceEEEEecccccccccccchhhcchhhhCCcccCCCc-cccccccccccccc
Confidence 689999999999999999998 6789999999999999999965 789999999999999997 99999976 67788
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHh-----------------hcCCCceEEEeeccccCCCCCCCCCC
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFR-----------------SKNLKTLVMGCPKTIDGDLKCKEVPA 238 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~-----------------~~~~~i~VIGVPKTIDNDL~~~~ie~ 238 (566)
.+.++..++-+.+|+.|+++|||+|++.|+.+-.++. ..+..+.|+|++.|||||+.+++ .
T Consensus 78 gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~--~ 155 (666)
T KOG2440|consen 78 GRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTD--M 155 (666)
T ss_pred ceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccc--e
Confidence 8999999999999999999999999999998866552 24667899999999999999988 8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHH
Q 008424 239 SFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIIC 318 (566)
Q Consensus 239 S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~ 318 (566)
++|-|||..- |+|+.|..++.|+.|. |++|+|||.|||+|+-.++|++++++++||.+... .|++|+.+.
T Consensus 156 ~iG~dsal~r--e~id~~~~ta~sh~Rg-Fv~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~-------~~q~~~~l~ 225 (666)
T KOG2440|consen 156 TIGIDSALHR--EAIDAITSTAQSHSRG-FVAEVMGRHCGYLALVAAIAGGADTIFIPERPGED-------PEQLCEILD 225 (666)
T ss_pred eeccccchhh--hhhhhhhhhhccCcce-EEeeehhhccchHHHHHHhhcCCCEEEecCCCCCC-------HHHHHHHHH
Confidence 9999999888 9999999999999885 89999999999999999999999999999998642 455566555
Q ss_pred HHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCc
Q 008424 319 KRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNV 398 (566)
Q Consensus 319 ~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~ 398 (566)
.-..+| ..+|+|.||.++. + |.
T Consensus 226 ~~r~~G--ln~viVigG~~~~----------------------~---------------------------------ga- 247 (666)
T KOG2440|consen 226 SIRKRG--LNIVIVIGGAIDN----------------------T---------------------------------GA- 247 (666)
T ss_pred HHHhCC--CCEEEEEecccCC----------------------C---------------------------------CC-
Confidence 544455 6789999998742 1 11
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecC
Q 008424 399 QVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGN 478 (566)
Q Consensus 399 ~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~n 478 (566)
.++++-|+++.-++. .+.++.+++|+.||++.|+.||+.+|..+|..|+..+...... +++.
T Consensus 248 --------~i~ae~vk~~~~k~l-------v~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s---~~~g 309 (666)
T KOG2440|consen 248 --------PIIAEEVKERKLKVL-------VVGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES---AENG 309 (666)
T ss_pred --------cccHHHHHHhhhhee-------eecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh---hccc
Confidence 123455566555543 3677889999999999999999999999999999888765543 2222
Q ss_pred CCCCccceEEeccchHHHHhHHHhc-CCCcceeeecccccCChhhHHHHHhhhccc------c-cCccc-CCccccccCC
Q 008424 479 LAAPVEEWTVSGTALTALMDVERRH-GKFKPVIKKAMVELDGAPFKKFVSMRDEWA------L-NNRYI-SPGPIQFTGP 549 (566)
Q Consensus 479 l~~~~~~w~~~~vPl~~~~~~e~~~-g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~------~-~d~y~-~pGpiq~~g~ 549 (566)
. .....|+.+...+.+.. -...++.-.--.++-+..|..+...-+.-. . ...|- .||++-.+|+
T Consensus 310 ~-------~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~ 382 (666)
T KOG2440|consen 310 N-------GIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGA 382 (666)
T ss_pred c-------eeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhccccccccCCCCceeccceeeech
Confidence 1 24446666655544331 111222223335566666655543322222 1 12222 4788877776
Q ss_pred CC
Q 008424 550 TS 551 (566)
Q Consensus 550 ~~ 551 (566)
.+
T Consensus 383 ~~ 384 (666)
T KOG2440|consen 383 PA 384 (666)
T ss_pred hh
Confidence 54
No 30
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=88.54 E-value=0.63 Score=49.54 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHH
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAE 251 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se 251 (566)
.|.++-..+++.+.+.++|-+++.|||||.+.++.-. +.+++|+|||.=.-|= |-=|-..=...+.
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~--------SgvfA~~P~~aa~ 149 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNY--------SGVFALSPEDAAR 149 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeecccccee--------ccccccChHHHHH
Confidence 4668888999999999999999999999988865432 5589999999744332 2114444444555
Q ss_pred HHHHHH
Q 008424 252 MIGNVM 257 (566)
Q Consensus 252 ~I~ni~ 257 (566)
+...++
T Consensus 150 l~~~~l 155 (355)
T COG3199 150 LLGAFL 155 (355)
T ss_pred HHHHHh
Confidence 555544
No 31
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.78 E-value=0.91 Score=46.82 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCC-----CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH
Q 008424 177 FKQATETAVKLDL-----DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK 247 (566)
Q Consensus 177 ~~~~~~~l~~l~I-----d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k 247 (566)
.+++.+.++.+++ |.+|+||||||+-.|+..+. +.+++|+||-. -++||-|..+
T Consensus 17 ~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~------------G~lGFL~~~~ 75 (259)
T PRK00561 17 LPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT------------GHLGFYTSFN 75 (259)
T ss_pred HHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec------------CCCccccccC
Confidence 4445555655565 99999999999988776542 34689999972 3789988543
No 32
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=87.72 E-value=1.3 Score=45.36 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCC------CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHH
Q 008424 175 EQFKQATETAVKLDL------DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTA 245 (566)
Q Consensus 175 e~~~~~~~~l~~l~I------d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA 245 (566)
+--+.+.+..+++++ |.+++||||||+-.|+.... +..++|+||-. -++||-|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~------------G~lGFL~~ 65 (246)
T PRK04761 6 EAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR------------GSVGFLMN 65 (246)
T ss_pred HHHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC------------CCCCcccC
Confidence 333444555566776 99999999999988766532 23689999974 26788774
No 33
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.65 E-value=1.9 Score=44.54 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcC-------CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH
Q 008424 175 EQFKQATETAVKLD-------LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK 247 (566)
Q Consensus 175 e~~~~~~~~l~~l~-------Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k 247 (566)
+-.+++.+.|++++ .|.+|++|||||+-.|+..... .-.+++|+||.- -++||-|...
T Consensus 15 ~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~------------G~lGFL~~~~ 79 (265)
T PRK04885 15 RVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT------------GHLGFYTDWR 79 (265)
T ss_pred HHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC------------CCceecccCC
Confidence 34455555565544 6899999999998877655421 113689999973 3789998643
Q ss_pred --HHHHHHHHHH
Q 008424 248 --IYAEMIGNVM 257 (566)
Q Consensus 248 --~~se~I~ni~ 257 (566)
-+-+.+.++.
T Consensus 80 ~~~~~~~l~~i~ 91 (265)
T PRK04885 80 PFEVDKLVIALA 91 (265)
T ss_pred HHHHHHHHHHHH
Confidence 3445555554
No 34
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=85.00 E-value=37 Score=32.69 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=64.1
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
+||+++.+...|-.+.++.|+-+.++.. +.++. . +.+ . .+++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~--g~~l~---------------~-----------------~~~---~-~~~~ 42 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVL---------------L-----------------ANS---Q-NDAE 42 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc--CCeEE---------------E-----------------EeC---C-CCHH
Confidence 5899999888899999999999887651 11111 0 000 1 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHH
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTA 245 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA 245 (566)
...+.++.+.+.++|++|+.+.+.+... ..+.+.+. ++++|.+-.+.+.. ... .++++|..
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~--~ip~v~~~~~~~~~--~~~--~~v~~d~~ 103 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKA--GIPVVLVDRDIPDG--DRV--PSVGSDNE 103 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhc--CCCEEEeccCCCCC--ccc--ceEecCcH
Confidence 5566777777789999999988766544 22344333 46788776665541 112 46666544
No 35
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=84.65 E-value=2.4 Score=45.34 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc--------------CCCceEEEeeccccC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK--------------NLKTLVMGCPKTIDG 229 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~--------------~~~i~VIGVPKTIDN 229 (566)
+.++.+++.+.+++.+.|.+|-|||--+++.|..++-..... +-.+++|.||-|--.
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 468899999999999999999999999999999998776522 112799999977654
No 36
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=84.19 E-value=1 Score=46.80 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=30.7
Q ss_pred HHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 182 ETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 182 ~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
......+.|.+|++|||||+..|+.... +.+++|+||+.
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~ 108 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT 108 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC
Confidence 3345689999999999999999886642 35789999994
No 37
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.53 E-value=2.5 Score=44.17 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=38.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~ 257 (566)
+.|.+|+||||||+-.|+.... +.+++|+||-. -++||=|.. +-+-+.+.++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA------------GHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC------------CCcccCCcCCHHHHHHHHHHHH
Confidence 6899999999999877766532 23688999863 378998874 44555666654
No 38
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=82.19 E-value=4 Score=43.22 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh--cCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS--KNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~--~~~~i~VIGVPKT 226 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... ..-.+++|.||-|
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 45778899999999999999999999999998877654332 1224789999976
No 39
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.53 E-value=3.6 Score=43.16 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=40.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH--HHHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK--IYAEMIGNVMID 259 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k--~~se~I~ni~~D 259 (566)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+.+.+.++...
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT------------GRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec------------CCCCcccccCHHHHHHHHHHHHcC
Confidence 5899999999999877766542 23689999973 3789999864 455666666543
No 40
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.47 E-value=3 Score=42.85 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=35.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHH--HHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKI--YAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~--~se~I~ni~ 257 (566)
+.|.+|+||||||+-.|+... +++|+||-. -++||-|.... +-+++.++.
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~------------G~lGfl~~~~~~~~~~~l~~~~ 92 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA------------GRLGFLSSYTLEEIDRFLEDLK 92 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC------------CCCccccccCHHHHHHHHHHHH
Confidence 669999999999998876543 578999872 36899887543 344455543
No 41
>PLN02929 NADH kinase
Probab=80.95 E-value=2.1 Score=45.14 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec---cccCCC-CCCCCC--CCCChHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK---TIDGDL-KCKEVP--ASFGFDTACK 247 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK---TIDNDL-~~~~ie--~S~GFdTA~k 247 (566)
+.|.+|++|||||+-.|+... ..+++|+||-. +.|.-- -.+.++ .+.||=+++.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~ 123 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT 123 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCC
Confidence 457889999999998887653 23679999853 222210 000111 2788888755
No 42
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=80.71 E-value=3.3 Score=46.50 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=38.2
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~ 257 (566)
++|.+|+||||||+-.|+.+.. +..++|+||. . -++||-|.. .-+-+.+..|.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~--G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------M--GSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------C--CCcceecccCHHHHHHHHHHHH
Confidence 6899999999999988877643 3457899984 2 489998764 33444555554
No 43
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.28 E-value=3.6 Score=43.48 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=37.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH--HHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK--IYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k--~~se~I~ni~ 257 (566)
+.|.+|+||||||+-.|+.... ..+++|+||-. -++||=|... -+-+.+..+.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~------------G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT------------GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC------------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999888776542 34689999952 3889988643 3344454443
No 44
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.00 E-value=3.8 Score=43.12 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~ 257 (566)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|.. +-+.+.+..+.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ------------GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec------------CCCeEeeccCHHHHHHHHHHHH
Confidence 6899999999999988876643 23679999973 379998874 34445555554
No 45
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=79.26 E-value=5.8 Score=42.76 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC--------------CCceEEEeecccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN--------------LKTLVMGCPKTID 228 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~--------------~~i~VIGVPKTID 228 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.....+ -.+++|.||-|--
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 137 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAG 137 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCc
Confidence 4678999999999999999999999999999887765443211 1268999996643
No 46
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=79.08 E-value=5.8 Score=42.53 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKTIDND 230 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.+
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 568899999999999999999999999999998887554211 1147899999665333
No 47
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=79.02 E-value=4.9 Score=42.64 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|..++
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 457899999999999999999999999999998887543 57899999876544
No 48
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.44 E-value=3.7 Score=43.42 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~ 257 (566)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+-+++..+.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL------------GHVGFLAEAEAEDLDEAVERVV 126 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec------------CCCceeccCCHHHHHHHHHHHH
Confidence 6899999999999988876643 23679999984 378998765 44455666654
No 49
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.71 E-value=6 Score=41.51 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK 247 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k 247 (566)
+.|.+|++|||||+-.|+.... +.+++|+||-. -++||-|...
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~------------G~lGFl~~~~ 105 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR------------GNLGFLTDLD 105 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC------------CCCCcccccC
Confidence 6899999999999888776542 23578999873 3688888755
No 50
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.50 E-value=6 Score=42.15 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccC
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDG 229 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDN 229 (566)
.+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+ .+++|.||-|--.
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gt 112 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAAT 112 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCcccc
Confidence 4678899999999999999999999999999999888654 5789999988643
No 51
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=77.03 E-value=12 Score=41.09 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=85.1
Q ss_pred CChhHHHhhCCcccCCCeEEEecCCC-------CccCCCCCcEEEEEeCCCCCchhhH-HH-------HHHHHH--HHhh
Q 008424 61 GNPDEIAKLFPNLFGQPSALLVPNGA-------DAVRSDEKLKIGVVLSGGQAPGGHN-VI-------SGIYDY--LQDR 123 (566)
Q Consensus 61 ~~~~~i~~~fp~~~~~~~~~~~~~~~-------~~~~~~~~~~IgIv~sGG~aPG~nn-vI-------~gl~~~--l~~~ 123 (566)
+-.+.+..+...+.|.|+.+-.|-.. ...+....-||++|++||..|=+|- -| +|.++- +..
T Consensus 183 ~a~Rav~mllkkl~ge~f~te~pmP~fd~v~p~p~~kdL~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~- 261 (431)
T TIGR01918 183 GSERAVDMLVKKLKGEEFQTEYPMPVFDRVEPAAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDR- 261 (431)
T ss_pred cHHHHHHHHHHhccCCcccccCCCCCCCcCCCCccCCchhhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccc-
Confidence 34556666666666666554443310 1123345579999999999997763 22 111110 000
Q ss_pred CCCCEEEEEccChhhhcC----CCEEecCc------c-c---ccc-hhccCCccccccCCCCCCCHHHHHHHHHHHHHcC
Q 008424 124 AKGSVLYGFRGGPAGIMK----CKYVELTS------N-Y---IYP-YRNQGGFDMICSGRDKIETPEQFKQATETAVKLD 188 (566)
Q Consensus 124 ~~~~~v~Gf~~G~~GLl~----~~~~eLt~------~-~---v~~-~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~ 188 (566)
....++.-.++||+--.- +.+++|+. + . +.. |..+-|. ||.+... ++.-..+++.|++-+
T Consensus 262 l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~LreLekEG~IG~L~~~fyst~G~---gt~~~~a--~~~g~eIa~~Lk~dg 336 (431)
T TIGR01918 262 LEGGVYETAHGGFDPAYANADPDRVVPVDVLRDYEKEGKIGELHEYFYSTVGN---GTTVAES--KQFAKEFVVELKQGG 336 (431)
T ss_pred cCccceEEeccccChHHHhcCCCeeeeHHHHHHHHHcCCcccccCeeEEcCCC---CchHHHH--HHHHHHHHHHHHHcC
Confidence 011233334455544332 12333331 1 0 111 2222222 3333221 244578899999999
Q ss_pred CCEEEEeCCchhHH-HHHHHHHHHhhcCCCceEEEe
Q 008424 189 LDGLVVIGGDDSNT-NACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 189 Id~LviIGGddS~t-~A~~Lae~~~~~~~~i~VIGV 223 (566)
+|+.|....-|+-+ .++.++.++++.|+.+..|+-
T Consensus 337 VDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 337 VDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred CCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 99999999988854 466778888888876544443
No 52
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=76.51 E-value=7.4 Score=42.41 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH 210 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~ 210 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~ 128 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALL 128 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHH
Confidence 45779999999999999999999999999999877643
No 53
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.35 E-value=83 Score=31.03 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=55.6
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
+||||+..-..|-...++.|+-+.++....+..++ +..+. .+++
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~---------------------------------~~~~~---~~~~ 44 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT---------------------------------VVSAD---YDLN 44 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE---------------------------------EccCC---CCHH
Confidence 48999988888999999999999876532222211 11111 1344
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
.....++.+...+.|++++.+.+... ....+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~~--ipvv~~ 88 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAAG--IVVVAV 88 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHCC--CeEEEe
Confidence 55677788889999999998766431 12233 3444444 567776
No 54
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=75.97 E-value=8 Score=41.67 Aligned_cols=55 Identities=25% Similarity=0.238 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... ...+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 567899999999999999999999999999988877543210 1246788888553
No 55
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=75.85 E-value=6.9 Score=41.52 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++ +. .++++|.||-|.-+|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a-~~----~~~p~i~iPTT~~t~s 116 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA-YK----LGIPFISVPTAASHDG 116 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH-Hh----cCCCEEEecCcccCCc
Confidence 457889999999999999999999999999988887 33 2478999999986554
No 56
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=75.72 E-value=6.8 Score=41.89 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
+.+.++++.+.+++.+.|.+|-|||--.++.|..+| +. + .+++|.||-|.-.|
T Consensus 72 t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--r--gip~I~IPTT~~td 124 (350)
T PRK00843 72 TMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--L--GIPFISVPTAASHD 124 (350)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEeCCCccCC
Confidence 567899999999999999999999998888888887 32 2 46899999997433
No 57
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=75.51 E-value=7.5 Score=40.89 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+. + .+++|.||-|.-.+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 5688999999999999999999999999999888876543 2 47899999765443
No 58
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=75.31 E-value=8.6 Score=41.61 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~ 211 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~ 107 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILL 107 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 567899999999999999999999999999888776543
No 59
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=74.95 E-value=8.5 Score=41.48 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae 209 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 4678999999999999999999999999999988764
No 60
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=74.89 E-value=8.9 Score=41.43 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc---------------CCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK---------------NLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~---------------~~~i~VIGVPKT 226 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 457889999999999999999999999999987766432211 123688988866
No 61
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=74.50 E-value=9.2 Score=41.24 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh-------------cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS-------------KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~-------------~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.... ....+++|.||-|-
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 45779999999999999999999999999999887642211 12346788888543
No 62
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=74.45 E-value=9.7 Score=41.30 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHH----------HHhh---cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE----------HFRS---KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae----------~~~~---~~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++- |+.. ....+++|.||-|=
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 4678999999999999999999999999999988764 2211 12246788888543
No 63
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=74.20 E-value=9.2 Score=40.99 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh-----------------cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS-----------------KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~-----------------~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.+.. ....+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 45788999999999999999999999999999888754311 11247899999663
No 64
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=74.06 E-value=6.9 Score=41.67 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+...++.+.+++.+.|.+|-|||--+++.|..++-. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999999888753 257899999774
No 65
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=74.03 E-value=8.6 Score=41.47 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh------------------cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS------------------KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~------------------~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.... .+..+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 45788999999999999999999999999998877653210 01246889999663
No 66
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=73.34 E-value=11 Score=40.52 Aligned_cols=55 Identities=25% Similarity=0.241 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh------------cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS------------KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~------------~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.... ....+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 56789999999999999999999999999999877643211 11246888888653
No 67
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=73.29 E-value=10 Score=40.87 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH----------Hhh---cCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH----------FRS---KNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~----------~~~---~~~~i~VIGVPKT 226 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. +.. ....+++|.||-|
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 45788999999999999999999999999998877632 111 1224789999976
No 68
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.22 E-value=8.1 Score=40.01 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcC---------CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHH
Q 008424 175 EQFKQATETAVKLD---------LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTA 245 (566)
Q Consensus 175 e~~~~~~~~l~~l~---------Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA 245 (566)
+-.+++.+.|++++ .|.+|++|||||+-.|+..... . -+++|+||.- . -++||-|.
T Consensus 17 ~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~--G~lGFL~~ 81 (264)
T PRK03501 17 EKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------K--DQLGFYCD 81 (264)
T ss_pred HHHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------C--CCCeEccc
Confidence 33445555565543 5799999999999887765421 1 1467888863 1 37888765
Q ss_pred HH--HHHHHHHHHH
Q 008424 246 CK--IYAEMIGNVM 257 (566)
Q Consensus 246 ~k--~~se~I~ni~ 257 (566)
.. -+-+.+.++.
T Consensus 82 ~~~~~~~~~l~~i~ 95 (264)
T PRK03501 82 FHIDDLDKMIQAIT 95 (264)
T ss_pred CCHHHHHHHHHHHH
Confidence 33 3334444443
No 69
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.77 E-value=4.3 Score=42.22 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK 247 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k 247 (566)
+.|.+++||||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~------------G~lGFL~~~~ 84 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR------------GNLGFLTDID 84 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC------------CCCcccccCC
Confidence 6899999999999988876542 23688999862 3789988643
No 70
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=72.75 E-value=10 Score=41.22 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 457889999999999999999999999999988876
No 71
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.27 E-value=3.1 Score=43.24 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH
Q 008424 187 LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK 247 (566)
Q Consensus 187 l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k 247 (566)
.+.|.+|++|||||+-.|..++ ..+++|+|||. -+.||-|...
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~------------G~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM------------GTLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC------------CCCCccccCC
Confidence 3789999999999998776643 23689999994 2557777654
No 72
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.75 E-value=8.8 Score=40.32 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVMI 258 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~~ 258 (566)
+.|.++++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+.+++..+..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~------------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR------------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC------------CcccccccCCHHHHHHHHHHHHc
Confidence 6899999999999888765432 34688999984 268998864 445566666653
No 73
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=71.46 E-value=13 Score=39.99 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKL---DLDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l---~Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++. +.|.+|-|||--+++.|..++-..... +-..++|.||-|-
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 567889999999988 999999999999999998887443211 1125688888654
No 74
>PRK15138 aldehyde reductase; Provisional
Probab=71.27 E-value=12 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH 210 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~ 210 (566)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~ 107 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAA 107 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHH
Confidence 45789999999999999999999999999998887643
No 75
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=70.95 E-value=10 Score=40.20 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+. |.+|.|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYM-R--GIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHc-c--CCCEEEecCch
Confidence 45789999999999998 89999999999998888874332 2 46899999886
No 76
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.90 E-value=9.9 Score=40.48 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.+ .+++|.||-|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 567788999999999999999999999999998887643 46899999774
No 77
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.49 E-value=12 Score=36.05 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=59.2
Q ss_pred cEEEEEeCC-CCCch--hhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCC---
Q 008424 95 LKIGVVLSG-GQAPG--GHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGR--- 168 (566)
Q Consensus 95 ~~IgIv~sG-G~aPG--~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR--- 168 (566)
++|||++|| |---| +|-++-.+..- ...+.+..-|---..-+ +-+-.||-+.+..-||- ++-|.|
T Consensus 2 Kkv~ViLSGCGV~DGaEIHEsVltllai---~r~GA~~~cFAP~~~Q~--hViNHlTGE~m~EtRNV----LvEsARIaR 72 (217)
T COG3155 2 KKVGVILSGCGVYDGAEIHESVLTLLAI---SRSGAQAVCFAPDKQQV--HVINHLTGEAMPETRNV----LVESARIAR 72 (217)
T ss_pred ceeEEEeecCcccchHHHHHHHHHHHHH---HhcCceeEEecCCchhh--hhhhhccccccchhhhH----HHHHHHHhh
Confidence 789999999 33333 45554444422 22344544443211100 01123455555555543 333332
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHH----------------HHHHHHHhhcCCCceEEEeec
Q 008424 169 DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNA----------------CLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A----------------~~Lae~~~~~~~~i~VIGVPK 225 (566)
.++.. +...+...+|+|++-||.|...+- ..|++.|.+.|-++-.|+|--
T Consensus 73 G~i~~-------l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP 138 (217)
T COG3155 73 GEIRP-------LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAP 138 (217)
T ss_pred ccccc-------hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecH
Confidence 33421 334456789999999999976553 234445555555555555543
No 78
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=70.05 E-value=13 Score=40.14 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH 210 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~ 210 (566)
+.+...++++.+++.+.|.+|-|||--.++.|..++-.
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~ 97 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAAL 97 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH
Confidence 34778999999999999999999999999998877653
No 79
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=69.25 E-value=22 Score=39.18 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHH-HHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNT-NACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t-~A~~Lae~~~~~~~~i~VIGV 223 (566)
.-+.+++.|++-++|++|..-.-|+-+ .++..+.++++.|+.+..|+.
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 346789999999999999998888754 466778888888876555543
No 80
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=69.16 E-value=14 Score=33.36 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=50.4
Q ss_pred cccccchhccCCccccccCCCCCC-CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 149 SNYIYPYRNQGGFDMICSGRDKIE-TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 149 ~~~v~~~~n~GG~~~LGSsR~k~~-~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
..++..|..-|-+ +|.|+..-.. +++.+.+.++.+.+.++-||++--|..--.--..+.+++.+++ ++++-+|.
T Consensus 33 ~~d~~~~l~~gEl-vlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 33 APDPSDWLRGGEL-VLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred cCCHHHhCCCCeE-EEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcC--CCEEEeCC
Confidence 3467778666555 6655554333 4566999999999999999999555322233445556665555 68999996
No 81
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=68.50 E-value=12 Score=40.30 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. .++++|.||-|
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 34678899999999999999999999999998888743 25789999987
No 82
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=68.44 E-value=13 Score=39.63 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++.+.+++.++ |.+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTT~ 121 (345)
T cd08195 67 SLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYM-R--GIDFIQIPTTL 121 (345)
T ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHh-c--CCCeEEcchhH
Confidence 56889999999999999 99999999999998888875332 2 47899999886
No 83
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=67.94 E-value=13 Score=39.74 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDG 229 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDN 229 (566)
+.+...++.+.+++.+.|.+|-|||--.++.|..++.. ..+++|.||-|--.
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagt 113 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIAST 113 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCcccc
Confidence 45778999999999999999999999999999888743 24689999977433
No 84
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=67.68 E-value=16 Score=39.44 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh---------------cCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS---------------KNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~---------------~~~~i~VIGVPKT 226 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... ..-.+++|.||-|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 35778999999999999999999999999998766532211 0123688888865
No 85
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=66.17 E-value=18 Score=38.87 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~ 211 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~ 104 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA 104 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 567899999999999999999999999999888776543
No 86
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=65.61 E-value=15 Score=39.26 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+. |.+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYM-R--GIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhc-C--CCCEEEcCchh
Confidence 46789999999999987 99999999999998888774322 2 47899999997
No 87
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=65.14 E-value=53 Score=32.18 Aligned_cols=172 Identities=18% Similarity=0.187 Sum_probs=95.1
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
|||+.....-|--..+..|+-+.++.+ +.++.-+. ... .+.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~~------------------------~~~-----------~d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL--GYEVEIVF------------------------DAQ-----------NDPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH--TCEEEEEE------------------------EST-----------TTHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEEEeC------------------------CCC-----------CCHHH
Confidence 788998888887788999999887764 23322110 011 13456
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC-CCCCCCCCCCChHHHHHHHHHHHHH
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD-LKCKEVPASFGFDTACKIYAEMIGN 255 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND-L~~~~ie~S~GFdTA~k~~se~I~n 255 (566)
....++.+.+.++|++++..-+.+... ..| +.+.++| |+||. +|+| ........++|+|.. +....+...
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~-~~l-~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA-PFL-EKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH-HHH-HHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH-HHH-HHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 678888888999999998888875433 333 4455555 57776 6777 444444578888743 333333333
Q ss_pred HHHHHhhcCCeeEEEEEcCCCCchH------HHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHH
Q 008424 256 VMIDARSTGKYYHFVRLMGRAASHI------TLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIIC 318 (566)
Q Consensus 256 i~~Da~S~~k~~~fVevMGR~ag~L------ALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~ 318 (566)
+. +....+..+.++ .|.....- +..-+|..++++-+++|... .+.+..+..+.+.+.+.
T Consensus 115 l~-~~~~~~~~v~~~--~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~l~ 179 (257)
T PF13407_consen 115 LA-EKLGAKGKVLIL--SGSPGNPNTQERLEGFRDALKEYPGVEIVDEYEY-TDWDPEDARQAIENLLQ 179 (257)
T ss_dssp HH-HHHTTTEEEEEE--ESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEE-CTTSHHHHHHHHHHHHH
T ss_pred HH-HHhccCceEEec--cCCCCchHHHHHHHHHHHHHhhcceeeeeeeeec-cCCCHHHHHHHHHHhhh
Confidence 33 322222223222 22222111 12234555678877774332 12344444444444444
No 88
>PRK11914 diacylglycerol kinase; Reviewed
Probab=64.85 E-value=18 Score=37.57 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+..+.++.+.+.+.|.+|++|||||...+. ..+. +.++++--+|.==-||+. .++|..+
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA-----r~lg~~~ 110 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA-----REFGIPT 110 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH-----HHcCCCC
Confidence 4455556556678889999999999987654 2222 335678889988889987 5777654
No 89
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=64.71 E-value=20 Score=38.43 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcC--CCEEEEeCCchhHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLD--LDGLVVIGGDDSNTNACLLAEH 210 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~--Id~LviIGGddS~t~A~~Lae~ 210 (566)
+.+..+++.+.+++.+ .|.+|-|||--.++.|..++-.
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~ 102 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 4577889999999888 9999999999999988776543
No 90
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.70 E-value=43 Score=30.59 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=44.3
Q ss_pred EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEE
Q 008424 191 GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFV 270 (566)
Q Consensus 191 ~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fV 270 (566)
.+++|=+|+.-..-..|++- .+++ .+++.|=|+-|++++. | ...++++|....-+.++ .++
T Consensus 2 t~vliR~Ds~~Kil~ALaDl-eRya-giki~gkPrii~p~~a--D-----------~~~~~ilGe~R~k~~~a----a~a 62 (125)
T COG1844 2 TIVLIRADSYDKILTALADL-ERYA-GIKIRGKPRIIPPELA--D-----------EILSSILGEVRKKCKVA----AVA 62 (125)
T ss_pred eEEEEecCcHHHHHHHHHHH-HHhc-CceeecCCcccChhhH--H-----------HHHHHHHHHHhcccchh----hee
Confidence 47888888887776777764 3344 5889999999999985 3 56677777775444433 355
Q ss_pred EEc
Q 008424 271 RLM 273 (566)
Q Consensus 271 evM 273 (566)
||-
T Consensus 63 ~v~ 65 (125)
T COG1844 63 EVE 65 (125)
T ss_pred eec
Confidence 653
No 91
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=64.56 E-value=21 Score=38.73 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeecc
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKT 226 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKT 226 (566)
.++..++++.+++.+.|.+|-|||--.++.|..++-.+... +-.+++|.||-|
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 65 RSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 45567778889999999999999999999998887543210 114688888854
No 92
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=64.54 E-value=50 Score=33.28 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCC---CC-------CCChHHHHHHHHHHHHHHHHHHhhcCC
Q 008424 196 GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEV---PA-------SFGFDTACKIYAEMIGNVMIDARSTGK 265 (566)
Q Consensus 196 GGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~i---e~-------S~GFdTA~k~~se~I~ni~~Da~S~~k 265 (566)
||.|.=|.|..||-++.++|.++.|| |-|-.++.. +. ...++.....-...+......+.....
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~Vlli------D~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y 84 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALF------EADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGF 84 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEE------eCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCC
Confidence 89999999999999998888765554 666654310 00 000000000000112222122222222
Q ss_pred eeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhc-chHhHHHHHHHHHHHHHHcCCCeEEEE
Q 008424 266 YYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQ-TLKNVTDYIVDIICKRAELGYNYGVIL 331 (566)
Q Consensus 266 ~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~-tL~~v~~~i~~~I~~R~~~gk~~gvVl 331 (566)
.|.||-+-|.. |.++..+ |+ .+|++|||=.+....+ ...+.++.+.+.. ++...+..+.+++
T Consensus 85 D~iiID~pp~~-~~~~~~a-l~-~aD~vliP~~ps~~d~~~~~~~~~~v~~~~-~~~~~~l~~~iv~ 147 (231)
T PRK13849 85 DYALADTHGGS-SELNNTI-IA-SSNLLLIPTMLTPLDIDEALSTYRYVIELL-LSENLAIPTAILR 147 (231)
T ss_pred CEEEEeCCCCc-cHHHHHH-HH-HCCEEEEeccCcHHHHHHHHHHHHHHHHHH-HHhCCCCCeEEEE
Confidence 35688877755 5665543 33 4699999987754332 2222233333322 2334456666444
No 93
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=63.81 E-value=20 Score=39.14 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~ 211 (566)
+.+..+++++.+++.+.|.+|-+||--+++.|..++-..
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence 457889999999999999999999998888887775433
No 94
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=63.27 E-value=21 Score=38.57 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKTI 227 (566)
+.+..+++++.++..+.|.+|-|||--.++.|..++-..... ...+++|.||-|-
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 457789999999999999999999998888887775432110 1246788888543
No 95
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=62.61 E-value=21 Score=39.06 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
+.+...++++.+++.+.|.+|-|||--.++.|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 457899999999999999999999999999887775
No 96
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=62.50 E-value=21 Score=38.36 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCC----CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL----DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I----d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+.+.+. |.+|-|||--.++.|..+|-.+. + +++.|.||-|.
T Consensus 69 s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~-r--g~p~i~VPTT~ 124 (354)
T cd08199 69 TMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYR-R--GTPYVRIPTTL 124 (354)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhc-C--CCCEEEEcCcc
Confidence 56788999999999999 99999999988888888875433 2 46899999986
No 97
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=62.44 E-value=24 Score=38.12 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-------CC------CceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-------NL------KTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-------~~------~i~VIGVPKTI 227 (566)
+.+...++++.+++.+.|.+|-|||--.++.|..++-..... +. .+++|.||-|-
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 457788899999999999999999999999986665322110 11 35788888664
No 98
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=62.10 E-value=22 Score=38.18 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK 247 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k 247 (566)
+-+...++.+.+.+.+. |.+|.|||--+.+.|..+|-.+. +| ++.+.||.|.-- .++.++|--|+++
T Consensus 58 ~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~-rg--i~~i~iPTTlla-----~vds~ig~k~~vn 127 (346)
T cd08196 58 SLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYM-RG--VSWSFVPTTLLA-----QVDSCIGSKSSIN 127 (346)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHH-cC--CCeEEecccHHH-----hhhccccccceec
Confidence 56889999999999999 89999999988888888875433 34 578999987531 1235666666555
No 99
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=62.05 E-value=20 Score=38.06 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
+.+..+++.+.+++ +.|.+|-|||--.++.|..+| +++ .+++|.||-|.-+|
T Consensus 66 ~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~~----gip~I~VPTT~~~~ 117 (332)
T cd08549 66 DEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FKV----GKPFISVPTAPSMD 117 (332)
T ss_pred CHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HHc----CCCEEEeCCCcccC
Confidence 56778888888888 999999999998888888887 432 47899999998554
No 100
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.38 E-value=9.7 Score=39.91 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=37.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH--HHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK--IYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k--~~se~I~ni~ 257 (566)
+.|.+|++|||||+-.|..... +.+++|+||-. -++||-|... -+-+.+..+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~------------G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGINH------------GRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC------------CCccccccCCHHHHHHHHHHHH
Confidence 5799999999999988876532 34688999872 3789988633 3444454443
No 101
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=61.08 E-value=29 Score=37.40 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLD---GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id---~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+-+..+++.+.+++.++| .+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~-r--gip~I~IPTTl 120 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLF-R--GIRLVHIPTTL 120 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCCEEEecCcc
Confidence 457899999999999999 9999999988888877764332 2 46899999874
No 102
>PRK13054 lipid kinase; Reviewed
Probab=59.47 E-value=19 Score=37.46 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHH-HHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNAC-LLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~-~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
...++.+...+.|.+|++|||||...+. .|.+. ..+.++++--+|.==-||+. .++|-.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa-----r~lgi~ 105 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA-----TAAGIP 105 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH-----HhcCCC
Confidence 3344444456789999999999977764 33221 11334677788987788887 455554
No 103
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=59.42 E-value=19 Score=38.25 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
.+.+..+++++.+++ +.|.+|-|||--.++.|..++.. ..+++|.||-|
T Consensus 65 pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~-----~~~p~i~IPTT 113 (348)
T cd08175 65 ADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK-----TGIPYISVPTA 113 (348)
T ss_pred CCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh-----cCCCEEEecCc
Confidence 356788888888888 99999999999999988888732 24689999998
No 104
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=58.95 E-value=1.6e+02 Score=31.24 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=91.3
Q ss_pred EEEeCCCCCchh-hHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC-CHH
Q 008424 98 GVVLSGGQAPGG-HNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE-TPE 175 (566)
Q Consensus 98 gIv~sGG~aPG~-nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~-~~e 175 (566)
-|++|||+.==. +.-+..+++.+++. +..+.+.+ |.+..+.+- .-+|++.++.++..|=...++..-..+. -.+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i-~~v~~iri--~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~ 214 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAI-DHVKIVRF--HTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTA 214 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhC-CCccEEEE--eCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCH
Confidence 588999986644 35788888888763 22232333 233332222 3357777777777762223443222111 025
Q ss_pred HHHHHHHHHHHcCCCEEE---Ee-CCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHH
Q 008424 176 QFKQATETAVKLDLDGLV---VI-GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAE 251 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~Lv---iI-GGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se 251 (566)
+..++++.|++.+|.-++ ++ |=|++......|.+.+.+.|...-.+....-..+ +--|.+....+-+
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g---------~~~f~~~~~~~~~ 285 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPG---------TAHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC---------cccccCcHHHHHH
Confidence 677888999999987643 44 5566666777788887777765333333322222 1223445555555
Q ss_pred HHHHHHHHHhhcCCeeEEEEEcCCC
Q 008424 252 MIGNVMIDARSTGKYYHFVRLMGRA 276 (566)
Q Consensus 252 ~I~ni~~Da~S~~k~~~fVevMGR~ 276 (566)
++..+..-....-.--+++++.|..
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCCCC
Confidence 5555543222222222577777754
No 105
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=58.79 E-value=18 Score=32.61 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHHHhhcCC--CceEEEeeccccCCCCCCCCCCCCChHHHHHH
Q 008424 189 LDGLVVIGGDDSNTNACLLAEHFRSKNL--KTLVMGCPKTIDGDLKCKEVPASFGFDTACKI 248 (566)
Q Consensus 189 Id~LviIGGddS~t~A~~Lae~~~~~~~--~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~ 248 (566)
.|.+|++|||||...+. ..+.+.+. ++++.-+|.==-||+. .++|+.+-...
T Consensus 55 ~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a-----r~lg~~~~~~~ 108 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA-----RSLGIPSDPEA 108 (130)
T ss_dssp -SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH-----HHTT--SSHHH
T ss_pred ccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH-----HHcCCCCCcHH
Confidence 48999999999977653 33333333 4588899988888887 57787776665
No 106
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=58.42 E-value=1.6e+02 Score=27.64 Aligned_cols=120 Identities=20% Similarity=0.206 Sum_probs=63.9
Q ss_pred EEEEEeCCC-CCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 96 KIGVVLSGG-QAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 96 ~IgIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
+||+|+... ..+-...++.|+.+.++....+.++ . +..+ . .++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------------~-----------------~~~~-~---~~~ 44 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEV---------------I-----------------LADS-Q---SDP 44 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEE---------------E-----------------EecC-C---CCH
Confidence 588888765 6777788888888876543001110 0 1101 1 122
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCC-CCCCCCCChHHHHHHHHHHH
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKC-KEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~-~~ie~S~GFdTA~k~~se~I 253 (566)
+...++++.+...++|+++..+.+..... +.+.+.+.+ +++|.+=.+.+..... ...-..+.+..+.+..++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 44556666677779999998887755432 444444444 5677664443321111 11113444455555555554
Q ss_pred HHH
Q 008424 254 GNV 256 (566)
Q Consensus 254 ~ni 256 (566)
...
T Consensus 120 ~~~ 122 (269)
T cd01391 120 AEK 122 (269)
T ss_pred HHh
Confidence 443
No 107
>PLN02727 NAD kinase
Probab=58.05 E-value=11 Score=45.29 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~ 257 (566)
++|.+|+||||||+-.|+.+.. +..++|+||-. -++||=|-. .-+.+.+..+.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl------------GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL------------GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC------------CCccccccCCHHHHHHHHHHHH
Confidence 6899999999999988877643 34678999863 488998864 33456666654
No 108
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=57.50 E-value=24 Score=36.94 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
.+.+.+++.|- ..+|.++||||-.| .|..+|+|-+++.+.++-.|-=|.
T Consensus 197 ~~RQ~a~~~La-~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~ 245 (281)
T PF02401_consen 197 QNRQEAARELA-KEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETAD 245 (281)
T ss_dssp HHHHHHHHHHH-CCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGG
T ss_pred HHHHHHHHHHH-hhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCcc
Confidence 45566666664 47999999999999 788899999998876555554444
No 109
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=56.64 E-value=31 Score=36.86 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcC---CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLD---LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~---Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++++ .|.+|.|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 65 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTTl 119 (344)
T cd08169 65 TFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLF-R--GIAFIRVPTTL 119 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCcEEEecCCc
Confidence 5678889999999887 899999999988888888875432 2 46899999984
No 110
>PLN02834 3-dehydroquinate synthase
Probab=56.36 E-value=30 Score=38.40 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLD---GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id---~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++++.+.+.++| .+|-|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 145 sl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~-r--giplI~VPTTl 199 (433)
T PLN02834 145 DMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQ-R--GVNFVQIPTTV 199 (433)
T ss_pred CHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhc-C--CCCEEEECCcC
Confidence 567889999999999998 9999999988888877764332 2 46899999984
No 111
>PRK13337 putative lipid kinase; Reviewed
Probab=56.16 E-value=17 Score=37.82 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
.++++.+...+.|.||++|||||...+.. .+...+.++++--+|.==-||+. .++|..
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGDGTl~~vv~---gl~~~~~~~~lgiiP~GT~NdfA-----r~lgi~ 104 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGDGTLNEVVN---GIAEKENRPKLGIIPVGTTNDFA-----RALHVP 104 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCHHHHHHH---HHhhCCCCCcEEEECCcCHhHHH-----HHcCCC
Confidence 33444445667899999999999877653 22223445667778987788887 455554
No 112
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=54.99 E-value=15 Score=32.65 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
+||.||=|||- =|+..+.+. +.....+||-+-+ .||+.-++.+. .+ +.
T Consensus 1 MkVLviGsGgR---EHAia~~l~----~s~~v~~v~~aPG-----------------------N~G~~~~~~~~-~~-~~ 48 (100)
T PF02844_consen 1 MKVLVIGSGGR---EHAIAWKLS----QSPSVEEVYVAPG-----------------------NPGTAELGKNV-PI-DI 48 (100)
T ss_dssp EEEEEEESSHH---HHHHHHHHT----TCTTEEEEEEEE-------------------------TTGGGTSEEE--S--T
T ss_pred CEEEEECCCHH---HHHHHHHHh----cCCCCCEEEEeCC-----------------------CHHHHhhceec-CC-CC
Confidence 47777777753 355555443 3344557775553 24544444332 22 55
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
.+.+.+++.|++++|| |||||-..-+.. =|+++|++.| ++|+|=.
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~g--i~vfGP~ 93 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAG--IPVFGPS 93 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT---CEES--
T ss_pred CCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCC--CcEECcC
Confidence 7889999999999999 678898888654 4889998877 4677643
No 113
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.47 E-value=14 Score=42.45 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH--HHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK--IYAEMIGNV 256 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k--~~se~I~ni 256 (566)
++|.+|+||||||+-.|+.... ..+++|+||-. -++||-|... -+-+.+.++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~------------G~lGFL~~~~~~~~~~~l~~~ 401 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM------------GTVGFLTEFSKEEIFKAIDSI 401 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC------------CCCCcCcccCHHHHHHHHHHH
Confidence 5799999999999988876532 34689999863 4899988753 333344444
No 114
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=52.57 E-value=87 Score=32.81 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 91 SDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
...|++||||+| -.+.|.+-++.-+-+ .+|..+++-|.= .-||=
T Consensus 11 P~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~---------------------~vQG~---------- 54 (319)
T PF02601_consen 11 PKFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPA---------------------SVQGE---------- 54 (319)
T ss_pred CCCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEec---------------------ccccc----------
Confidence 356789999998 455666666665543 456555542220 11221
Q ss_pred CCCHHHHHHHHHHHHHcC----CCEEEEeCCchhHHHHHHHHHHHhh---cCCCceEE-Eeecccc
Q 008424 171 IETPEQFKQATETAVKLD----LDGLVVIGGDDSNTNACLLAEHFRS---KNLKTLVM-GCPKTID 228 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~----Id~LviIGGddS~t~A~~Lae~~~~---~~~~i~VI-GVPKTID 228 (566)
..++++-++++.+.+.+ +|.+||+=|-||...-..+.++-.- ..++++|| ||=..+|
T Consensus 55 -~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D 119 (319)
T PF02601_consen 55 -GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETD 119 (319)
T ss_pred -chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCC
Confidence 23566777788887765 9999999999998775554433221 14566665 4444333
No 115
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=52.29 E-value=31 Score=37.43 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+.+..+++.+.+...+.|.++=|||--+.+.|..+|..+ ++++|.||-+=.+|=.
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~-----~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL-----GLPFISVPTIASTDAI 123 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc-----CCCEEEecCccccccc
Confidence 567788888888889999999999999999999888653 5789999998888865
No 116
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=51.86 E-value=34 Score=37.34 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCC---EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 174 PEQFKQATETAVKLDLD---GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id---~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
.+...++.+.+.+.+.| .+|-|||--+.+.|..+|-.+ .+ .++.|.||-|
T Consensus 94 ~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~-~r--gip~I~IPTT 146 (389)
T PRK06203 94 PALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATA-HR--GVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHh-cC--CCCEEEEcCC
Confidence 36789999999999998 999999998888887776432 23 4689999999
No 117
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=51.74 E-value=1.3e+02 Score=34.57 Aligned_cols=85 Identities=24% Similarity=0.277 Sum_probs=59.3
Q ss_pred cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCe
Q 008424 187 LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKY 266 (566)
Q Consensus 187 l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~ 266 (566)
.-||+++|-+|-=+...|..|-+.+...|++ -|+-=|.|||- + ..+-+|. ++.....
T Consensus 122 ~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIeq-------------------I-~svi~IA-ka~P~~p- 178 (717)
T COG4981 122 APIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIEQ-------------------I-RSVIRIA-KANPTFP- 178 (717)
T ss_pred CCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHHH-------------------H-HHHHHHH-hcCCCCc-
Confidence 5599999999999999999999988776754 45555666541 1 1222332 3333333
Q ss_pred eEEEEEcCCCCc-h----------HHHHhhhhcCCcEEEe
Q 008424 267 YHFVRLMGRAAS-H----------ITLECALQTHPNITII 295 (566)
Q Consensus 267 ~~fVevMGR~ag-~----------LALe~aLqt~pnivlI 295 (566)
.++.+-|..|| | |+..+.|.+++|++|+
T Consensus 179 -Iilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~ 217 (717)
T COG4981 179 -IILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLC 217 (717)
T ss_pred -eEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEE
Confidence 46777666554 3 7888999999999986
No 118
>PRK07360 FO synthase subunit 2; Reviewed
Probab=51.73 E-value=1.7e+02 Score=31.59 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=94.5
Q ss_pred CCCcEEEEEeCCCCCchhh--HHHHHHHHHHHhhCCCCEEEEEcc-------ChhhhcCCCEEecCcccccchhccCCcc
Q 008424 92 DEKLKIGVVLSGGQAPGGH--NVISGIYDYLQDRAKGSVLYGFRG-------GPAGIMKCKYVELTSNYIYPYRNQGGFD 162 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~n--nvI~gl~~~l~~~~~~~~v~Gf~~-------G~~GLl~~~~~eLt~~~v~~~~n~GG~~ 162 (566)
....++.++ ||.-|-.. .-+..+++.+|+..++..+.++-. -..|+. +.+.+..++.-|=..
T Consensus 106 ~G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~-------~~e~l~~LkeAGld~ 176 (371)
T PRK07360 106 RGATEVCIQ--GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLS-------YEEVLKALKDAGLDS 176 (371)
T ss_pred CCCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCC-------HHHHHHHHHHcCCCc
Confidence 345677777 44445443 456778888877666666665410 011222 233344444333222
Q ss_pred ccccCCC-----------C-CCCHHHHHHHHHHHHHcCC--CEEEEeCCchhHHHHHHHHHHHhhcCCCc-e-EEEeecc
Q 008424 163 MICSGRD-----------K-IETPEQFKQATETAVKLDL--DGLVVIGGDDSNTNACLLAEHFRSKNLKT-L-VMGCPKT 226 (566)
Q Consensus 163 ~LGSsR~-----------k-~~~~e~~~~~~~~l~~l~I--d~LviIGGddS~t~A~~Lae~~~~~~~~i-~-VIGVPKT 226 (566)
+.++++. + ..+.+++-++++.++++++ ..=+++|=-.|..........+++.+.+. . ..-||-.
T Consensus 177 ~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 177 MPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred CCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 3333321 1 1255677899999999997 55566665556666555555555543321 0 1225533
Q ss_pred ccCCCCCCCCCC-------CCChHHHHHHHHHHHHHHHHHHhh--cCCeeEEEEEcCCCCchHHHHhhhhcCCcEE---E
Q 008424 227 IDGDLKCKEVPA-------SFGFDTACKIYAEMIGNVMIDARS--TGKYYHFVRLMGRAASHITLECALQTHPNIT---I 294 (566)
Q Consensus 227 IDNDL~~~~ie~-------S~GFdTA~k~~se~I~ni~~Da~S--~~k~~~fVevMGR~ag~LALe~aLqt~pniv---l 294 (566)
+-+ ++|..+. +.+.+. ++++|- -.|..+-.. -.-+|. ++|- .....+|..++|.+ +
T Consensus 257 f~~--~~Tpl~~~~~~~~~~~~~~~-lr~iAi--~Rl~lp~~~~~i~a~~~---~lg~----~~~~~~l~~Gan~~~~~~ 324 (371)
T PRK07360 257 FVH--ENAPLYERGRVKGGAPGLED-LLLYAV--SRIFLGNWIKNIQASWV---KLGL----KLAQVALNCGANDLGGTL 324 (371)
T ss_pred ccC--CCCccccccccCCCCCHHHH-HHHHHH--HHHhcCCCCCCeeccce---eeCH----HHHHHHHhcCCccCcCcC
Confidence 333 2233221 223333 444432 233322200 111221 2221 22356788899998 9
Q ss_pred eCCchhh
Q 008424 295 IGEEVAA 301 (566)
Q Consensus 295 IpEe~~~ 301 (566)
+||.+..
T Consensus 325 ~~~~v~~ 331 (371)
T PRK07360 325 MEEHITK 331 (371)
T ss_pred cccceec
Confidence 9988765
No 119
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=51.63 E-value=35 Score=38.46 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=74.6
Q ss_pred CEEEEEccChhhhcCCCEEecCcccccchhcc--CCccccccCCCCCCCHHHHHHHHHHHHHcCC---CEEEEeCCchhH
Q 008424 127 SVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQ--GGFDMICSGRDKIETPEQFKQATETAVKLDL---DGLVVIGGDDSN 201 (566)
Q Consensus 127 ~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~--GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~I---d~LviIGGddS~ 201 (566)
..|+-..++..++ .+..+.++++.+..+... .-..++=..-..-++-+.++++.+.+.+.++ |.+|.+||--..
T Consensus 172 ~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~ 250 (488)
T PRK13951 172 HLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALT 250 (488)
T ss_pred eeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 3444334444444 357677788777653321 0011111111223466889999999999999 999999999888
Q ss_pred HHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHH
Q 008424 202 TNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKI 248 (566)
Q Consensus 202 t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~ 248 (566)
+.|...|--+.+ .|+.|.||-|+-- .+|.|+|--|++++
T Consensus 251 D~agf~A~~y~R---Gi~~i~vPTTlla-----~vDssiggK~~vn~ 289 (488)
T PRK13951 251 DFTGFVASTFKR---GVGLSFYPTTLLA-----QVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHhc---CCCeEecCccHHH-----HHhcCCCCCeeeeC
Confidence 888887765542 4789999999854 34578888888765
No 120
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=51.41 E-value=36 Score=35.42 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=42.8
Q ss_pred cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 008424 187 LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARS 262 (566)
Q Consensus 187 l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S 262 (566)
...+.++++||||++-.|+.... ...++|+||=. -++||=|-.+ .+.+..+..+...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~------------G~lGFLt~~~--~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL------------GHLGFLTDFE--PDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeC------------CCcccccccC--HHHHHHHHHHHhc
Confidence 67899999999999998876653 23478999842 3899988877 5666666555555
No 121
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=50.42 E-value=19 Score=37.09 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=30.3
Q ss_pred HHHcCCCEEEEeCCchhHHHHHH-HHHHHhhcCCCceEEE-eeccccCCCC
Q 008424 184 AVKLDLDGLVVIGGDDSNTNACL-LAEHFRSKNLKTLVMG-CPKTIDGDLK 232 (566)
Q Consensus 184 l~~l~Id~LviIGGddS~t~A~~-Lae~~~~~~~~i~VIG-VPKTIDNDL~ 232 (566)
+...+.|.+|++|||||...+.. |.+ .. +.+.+| +|.==-||+.
T Consensus 53 ~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 53 ARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34567899999999999887653 432 11 234566 8977778876
No 122
>PRK13055 putative lipid kinase; Reviewed
Probab=49.72 E-value=27 Score=36.99 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHH-HHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNAC-LLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~-~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
++.++.+...+.|.+|++|||||+..+. -|. ..+..+++--+|.==-||+. .++|..
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~----~~~~~~~LgiiP~GTgNdfA-----r~Lgi~ 106 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGDGTINEVVNGIA----PLEKRPKMAIIPAGTTNDYA-----RALKIP 106 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCCCHHHHHHHHHh----hcCCCCcEEEECCCchhHHH-----HHcCCC
Confidence 3444444567789999999999977654 333 22334566678987788887 455554
No 123
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=49.59 E-value=2.6e+02 Score=27.33 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=51.0
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
+|||+...-.-|=...++.|+-+.++.. +.++. +..+. .+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLR---------------------------------VYDAG---GDDA 42 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 5888887777777778888888776542 22221 00111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
.....++.+...++|++|+..++.... ...+ +.+.++| ++||.+
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~~~~~~-~~~i-~~~~~~~--ipvV~~ 86 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVL-KPWV-KRALDAG--IPVVAF 86 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhh-HHHH-HHHHHcC--CCEEEe
Confidence 445666777778999999998764321 2223 3344444 566655
No 124
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=49.33 E-value=79 Score=31.15 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=65.8
Q ss_pred EEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCC---------EEecCcccccchhccCCccccccCCC
Q 008424 99 VVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCK---------YVELTSNYIYPYRNQGGFDMICSGRD 169 (566)
Q Consensus 99 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---------~~eLt~~~v~~~~n~GG~~~LGSsR~ 169 (566)
+|++||+.|-.... +. .......+++.=+|..=|++.. +=-++++..+.+... |..++--...
T Consensus 2 ~Ii~~g~~~~~~~~-----~~--~~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~p~~ 73 (208)
T cd07995 2 LILLGGPLPDSPLL-----LK--LWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEIIHFPDE 73 (208)
T ss_pred EEEECCcCCcchhH-----HH--hhccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeEEECCCC
Confidence 67888888854443 11 1234567899999988777643 223334445555444 4333322222
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCchh-----HHHHHHHHHH
Q 008424 170 KIETPEQFKQATETAVKLDLDGLVVIGGDDS-----NTNACLLAEH 210 (566)
Q Consensus 170 k~~~~e~~~~~~~~l~~l~Id~LviIGGddS-----~t~A~~Lae~ 210 (566)
++..+++++++.+.+++-+-++++|+-|. +.+...|..+
T Consensus 74 --KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~ 117 (208)
T cd07995 74 --KDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKY 117 (208)
T ss_pred --CCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHH
Confidence 35568999999999999999999999764 5555666555
No 125
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.13 E-value=18 Score=37.52 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHH--HHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACK--IYAEMIGNVMI 258 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k--~~se~I~ni~~ 258 (566)
+.|.+|++|||||+-.|+... ..+|+||-. -++||-|... -+-+.+..+..
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM------------GGLGFLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC------------CCCccCcccCHHHHHHHHHHHHc
Confidence 789999999999987776532 248999853 3789987643 33345555543
No 126
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=48.59 E-value=1.6e+02 Score=29.19 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=50.4
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
+||||+..-.-|--..++.|+-+.++.. +.++. +..+... .+.+
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~~-~~~~ 44 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRL--GVSLK---------------------------------LLEAGGY-PNLA 44 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCCCC-CCHH
Confidence 5888887766777777778887776532 22221 0011111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
.....++.+...++|++++.+.+.... . .+ +++.++| ++||.+
T Consensus 45 ~~~~~i~~~~~~~vdgiI~~~~~~~~~-~-~~-~~~~~~g--iPvV~~ 87 (268)
T cd06306 45 KQIAQLEDCAAWGADAILLGAVSPDGL-N-EI-LQQVAAS--IPVIAL 87 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChhhH-H-HH-HHHHHCC--CCEEEe
Confidence 455668888889999999997654322 2 33 3344444 566654
No 127
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=48.55 E-value=36 Score=36.95 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 175 EQFKQATETAVKLDLD---GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id---~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+.+.++.+.+.+.+.| .+|.|||--..+.|..+|-.+ .+ .++.|.||-|
T Consensus 83 ~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~-~r--Gip~I~IPTT 134 (369)
T cd08198 83 DLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATA-HR--GVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHh-cC--CCCEEEECCC
Confidence 6688999999999998 999999988888887776542 23 4789999999
No 128
>PRK13057 putative lipid kinase; Reviewed
Probab=48.23 E-value=44 Score=34.45 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.+..+.++.+ ..+.|.+|++|||||...+.. .+.. .++++-.+|.===||+. .++|...
T Consensus 37 ~~~a~~~~~~~-~~~~d~iiv~GGDGTv~~v~~---~l~~--~~~~lgiiP~GT~Ndfa-----r~Lg~~~ 96 (287)
T PRK13057 37 PDDLSEVIEAY-ADGVDLVIVGGGDGTLNAAAP---ALVE--TGLPLGILPLGTANDLA-----RTLGIPL 96 (287)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECchHHHHHHHH---HHhc--CCCcEEEECCCCccHHH-----HHcCCCC
Confidence 33444444443 467899999999999877642 2222 25678889987788887 4666653
No 129
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=48.06 E-value=92 Score=33.33 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEE
Q 008424 173 TPEQFKQATETAVKL--DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMG 222 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l--~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIG 222 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+. ..+||-
T Consensus 60 tp~~w~~la~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~~--~kPVVl 109 (336)
T TIGR00519 60 KPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLET--PKPVVF 109 (336)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcCC--CCCEEE
Confidence 567777777766554 799999999999998877665655544 335553
No 130
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=47.89 E-value=47 Score=39.99 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae 209 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia~ 560 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMWL 560 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 4578999999999999999999999999999888763
No 131
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.63 E-value=23 Score=37.28 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHH---HHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY---AEMIGNVM 257 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~---se~I~ni~ 257 (566)
+.|.+|++|||||+-.|+.... +.+++|+||.. . -++||-|..... -+++.++.
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~--G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------G--GHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------C--CcceEecCchhhcchHHHHHHHH
Confidence 6899999999999887765532 34678999875 1 378998865321 45555554
No 132
>PRK10586 putative oxidoreductase; Provisional
Probab=46.16 E-value=44 Score=36.06 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCK 234 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~ 234 (566)
+.++.+++.+.++ .+.|.+|-|||--+++.|..++.. .++++|.||-|-.+|-..+
T Consensus 72 ~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s 127 (362)
T PRK10586 72 SESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWT 127 (362)
T ss_pred CHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCcccccccc
Confidence 3566677766665 589999999999999999988853 2578999998888776543
No 133
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=46.11 E-value=3e+02 Score=27.02 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCch
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDD 199 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGdd 199 (566)
++....++.+...++|++++.+.+.
T Consensus 43 ~~~~~~i~~~~~~~vdgiii~~~~~ 67 (270)
T cd06308 43 SKQVADIENFIRQGVDLLIISPNEA 67 (270)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCch
Confidence 3345566777889999999987663
No 134
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=46.01 E-value=30 Score=35.59 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+.+...++.+.++..+.|.+|-+||--.++.|...|... +++.|.||-+..+|=-
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~-----~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL-----GIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH-----T--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc-----CCCEEEeccccccccc
Confidence 466778888888888999999999988888887777553 5789999999888853
No 135
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=45.93 E-value=82 Score=28.34 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=41.8
Q ss_pred EEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHH-HHHHHhhcCCeeEEE
Q 008424 192 LVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGN-VMIDARSTGKYYHFV 270 (566)
Q Consensus 192 LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~n-i~~Da~S~~k~~~fV 270 (566)
|++|=||+....-..||+- .++| ++.+.|-|+-|+-++. -+...+.++. +...+.++ .++
T Consensus 1 ~~lIR~dn~~K~~~ALaDl-eRh~-~l~i~gkPrii~p~~A-------------D~i~~~ilg~~lr~~~k~A----~lv 61 (107)
T PF04009_consen 1 LILIRADNYDKILNALADL-ERHG-GLKIRGKPRIIPPEYA-------------DWILEKILGEPLRKKCKAA----ALV 61 (107)
T ss_pred CeEEecCCHHHHHHHHHHH-HHhc-CCeEecCCcccChHHH-------------HHHHHHHhCCccccccchh----eEE
Confidence 5778888888877788864 4455 6899999999988765 2444555555 55555443 355
Q ss_pred EE
Q 008424 271 RL 272 (566)
Q Consensus 271 ev 272 (566)
++
T Consensus 62 ~v 63 (107)
T PF04009_consen 62 KV 63 (107)
T ss_pred Ee
Confidence 55
No 136
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.90 E-value=2e+02 Score=28.32 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=57.2
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
.||||+..-..|-...++.|+.+.++.. +..++- ..+. .+++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~---------------------------------~~~~---~~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--GYSLLI---------------------------------ANSL---NDPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--CCEEEE---------------------------------EeCC---CChH
Confidence 3899998878899999999999887652 333321 0111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecccc
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTID 228 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTID 228 (566)
...++++.+...++|++++.+++... ..+.+.+++++ ++||.+=...+
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~~~---~~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDERD---PELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc---HHHHHHHHhCC--CCEEEEecccC
Confidence 55677788899999999999876432 22334455555 56666544333
No 137
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=45.70 E-value=44 Score=34.59 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHH-HHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNAC-LLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~-~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+...+.+.+.+.|.+|++|||||...+. -|.+. ..+..+++.-+|.==-||+.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 3344444467789999999999977654 33221 11234567789988889987
No 138
>PRK13059 putative lipid kinase; Reviewed
Probab=45.63 E-value=36 Score=35.33 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=36.9
Q ss_pred HcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 186 KLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 186 ~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.+.|.+|++|||||...+. +.+.+.+.++++--+|.==-||+. .++|...
T Consensus 54 ~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA-----r~lgi~~ 104 (295)
T PRK13059 54 DESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA-----KFLGMPT 104 (295)
T ss_pred hcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH-----HHhCCCC
Confidence 46789999999999977654 333334556778889987788876 4666543
No 139
>PRK06186 hypothetical protein; Validated
Probab=45.55 E-value=24 Score=35.86 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCCEEEEeCCchh--HHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcC
Q 008424 188 DLDGLVVIGGDDS--NTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTG 264 (566)
Q Consensus 188 ~Id~LviIGGddS--~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~ 264 (566)
+.|+++|.||.|. ..+.-..++|+++++ +++.| .|.|++.|+=.++.-+-.+ .||.|..
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LG---------------IClGmQ~avIe~arnv~g~-~dA~s~E 113 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLG---------------TCGGFQHALLEYARNVLGW-ADAAHAE 113 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEe---------------echhhHHHHHHHHhhhcCC-cCCCcCC
Confidence 6799999999987 344556668887765 45766 5999999877666655544 4777753
No 140
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=45.41 E-value=1.4e+02 Score=33.33 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 91 SDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
...|++||||||=- -+||+-++..++...|..+|+-+-- .-+|=
T Consensus 132 P~~p~~IGVITS~t-----gAairDIl~~~~rR~P~~~viv~pt---------------------~VQG~---------- 175 (440)
T COG1570 132 PFFPKKIGVITSPT-----GAALRDILHTLSRRFPSVEVIVYPT---------------------LVQGE---------- 175 (440)
T ss_pred CCCCCeEEEEcCCc-----hHHHHHHHHHHHhhCCCCeEEEEec---------------------cccCC----------
Confidence 35678999999732 3788888888888888877763320 11222
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEeCCchhHHHHHHHHHHHhhc---CCCceEEE
Q 008424 171 IETPEQFKQATETAVKLD-LDGLVVIGGDDSNTNACLLAEHFRSK---NLKTLVMG 222 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~-Id~LviIGGddS~t~A~~Lae~~~~~---~~~i~VIG 222 (566)
...+++-++++.+.+.+ +|.|||.=|-||...--.+.|+..-+ .++|+||.
T Consensus 176 -~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 176 -GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred -CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 13567788888888888 99999999999999877776654322 56778874
No 141
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.12 E-value=2e+02 Score=28.73 Aligned_cols=67 Identities=28% Similarity=0.246 Sum_probs=47.5
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
++||++...-..|....++.|+.+.+++. +.+++ +..+. .++
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~--gy~~~---------------------------------~~~~~---~~~ 42 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAI--GWNLR---------------------------------ILDGR---GSE 42 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHc--CcEEE---------------------------------EECCC---CCH
Confidence 47999998888899999999999887543 22221 11111 134
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCch
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDD 199 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGdd 199 (566)
++..++++.+...++|++|+.+.+-
T Consensus 43 ~~~~~~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 43 AGQAAALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH
Confidence 4556788899999999999998653
No 142
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=44.36 E-value=1.5e+02 Score=32.06 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEcc-----Chhhhc------CCCE---EecCc-ccccch--hccCCccccc-cCCCCCC
Q 008424 111 NVISGIYDYLQDRAKGSVLYGFRG-----GPAGIM------KCKY---VELTS-NYIYPY--RNQGGFDMIC-SGRDKIE 172 (566)
Q Consensus 111 nvI~gl~~~l~~~~~~~~v~Gf~~-----G~~GLl------~~~~---~eLt~-~~v~~~--~n~GG~~~LG-SsR~k~~ 172 (566)
+++..+.+.++.......||+..- |.+|-. +.++ +|.+. .+.... ...|+-.+|. .-+.-+-
T Consensus 184 a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD~aI~vDv~~~~d~~~~~~~~lg~Gp~i~~~D~~~i~ 263 (350)
T TIGR03107 184 LMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGEGTLLRFFDPGHIM 263 (350)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCCCCEEEEEecCCcCCCCCCCccccCCCceEEEecCCCCC
Confidence 455556666654445678887652 555532 3332 23332 111111 2234334662 2245566
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
++.-.+.+.+.+++++|..=+++-|-||-.++..++ ..|+++-+|+||.
T Consensus 264 ~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~----~~Gvpt~~i~ip~ 312 (350)
T TIGR03107 264 LPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLK----NSGVPSTTIGVCA 312 (350)
T ss_pred CHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHh----CCCCcEEEEccCc
Confidence 788899999999999999877664435544554443 4699999999995
No 143
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=44.24 E-value=2.4e+02 Score=27.74 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=53.6
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
+||||+..-..|....++.|+-+.++.. +.++.-+ ..... .+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~~~-~~~~ 44 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL--GVSVDIQ---------------------------------AAPSE-GDQQ 44 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh--CCeEEEE---------------------------------ccCCC-CCHH
Confidence 5889988777888888888888886542 2222100 00000 1233
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
....+++.+...++|++++.+.+.+.... .+ +++.+++ ++||.+-.
T Consensus 45 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-~~-~~~~~~~--iPvV~~~~ 90 (275)
T cd06320 45 GQLSIAENMINKGYKGLLFSPISDVNLVP-AV-ERAKKKG--IPVVNVND 90 (275)
T ss_pred HHHHHHHHHHHhCCCEEEECCCChHHhHH-HH-HHHHHCC--CeEEEECC
Confidence 44567888888999999987765442222 22 4445444 57776643
No 144
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=44.23 E-value=87 Score=30.60 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH--HHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD--TACKIYAE 251 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd--TA~k~~se 251 (566)
++....+++.+...++|++++++.+.+.. ..+.+.+. +++||.+ |++...+.+ .++++| .+.+..++
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~--~ipvV~~----~~~~~~~~~-~~v~~d~~~~~~~~~~ 109 (268)
T cd06298 41 KEKELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRS--PTPVVLA----GSVDEDNEL-PSVNIDYKKAAFEATE 109 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcC--CCCEEEE----ccccCCCCC-CEEEECcHHHHHHHHH
Confidence 34445666777789999999998654322 22334444 4567765 333332222 344544 45554444
Q ss_pred HH
Q 008424 252 MI 253 (566)
Q Consensus 252 ~I 253 (566)
.+
T Consensus 110 ~l 111 (268)
T cd06298 110 LL 111 (268)
T ss_pred HH
Confidence 44
No 145
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=44.16 E-value=45 Score=35.22 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHc-CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 176 QFKQATETAVKL-DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 176 ~~~~~~~~l~~l-~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
.++++.+.+++. +.|.+|-|||--.++.|..+|.. + ++++|.||-|.-+|-.
T Consensus 62 ~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~ 114 (331)
T cd08174 62 DAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGI 114 (331)
T ss_pred CHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCcc
Confidence 345555556555 59999999999999999888762 2 4789999999877544
No 146
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=43.75 E-value=2e+02 Score=24.27 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=42.3
Q ss_pred CCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCC
Q 008424 196 GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275 (566)
Q Consensus 196 GGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR 275 (566)
||.|.-+-|..|+.++.++|.++-++ |.|.. . .+.+|.+-+.
T Consensus 9 gG~Gkst~~~~la~~~~~~~~~vl~~------d~d~~-------------------------------~-d~viiD~p~~ 50 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLI------DLDPQ-------------------------------Y-DYIIIDTPPS 50 (104)
T ss_pred CCcCHHHHHHHHHHHHHhCCCcEEEE------eCCCC-------------------------------C-CEEEEeCcCC
Confidence 78999999999999999877654444 55543 2 2456776554
Q ss_pred CCchHHHHhhhhcCCcEEEeCCchh
Q 008424 276 AASHITLECALQTHPNITIIGEEVA 300 (566)
Q Consensus 276 ~ag~LALe~aLqt~pnivlIpEe~~ 300 (566)
. +..+. .++ ..+|.+++|=++.
T Consensus 51 ~-~~~~~-~~l-~~ad~viv~~~~~ 72 (104)
T cd02042 51 L-GLLTR-NAL-AAADLVLIPVQPS 72 (104)
T ss_pred C-CHHHH-HHH-HHCCEEEEeccCC
Confidence 4 55544 333 3467888877654
No 147
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=42.84 E-value=1.1e+02 Score=30.68 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=59.0
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
.|||++..-..|-...++.|+-+.++.. +..+. +..+. .+++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL--GAEVI---------------------------------VQNAN---GDPA 42 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 3788887777788888888888876542 33322 00111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
...+.++.+...++|++++.+.+.+... ..| +.+.+.+ ++||.+ |.+........++++|
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~l-~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d 102 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEALA-SAV-EKAADAG--IPVIAY----DRLILNSNVDYYVSFD 102 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhHH-HHH-HHHHHCC--CCEEEE----CCCCCCCCcceEEEeC
Confidence 4567777788899999999886654211 223 3444444 567754 4444332222345554
No 148
>PRK05670 anthranilate synthase component II; Provisional
Probab=42.75 E-value=36 Score=32.88 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHH
Q 008424 185 VKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250 (566)
Q Consensus 185 ~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~s 250 (566)
++++.|+||+-||.++-..+....+.+++...+++|.| .|+|+.-.+....
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLG---------------IClG~Qlla~alG 90 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILG---------------VCLGHQAIGEAFG 90 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEE---------------ECHHHHHHHHHhC
Confidence 56779999999999887554433333322222466777 4999988777653
No 149
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.37 E-value=52 Score=31.56 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
++++.+.+.+++.++.+++.+|.+.|- +..-+-.++- ....+|||||-..
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-aa~Lpgvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-AAHLPGMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-cchhHHHHHh-----ccCCCEEEecCCc
Confidence 467889999999999999776666654 2222223332 3468999999743
No 150
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=41.56 E-value=36 Score=30.69 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=30.0
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCC---ceEEEeeccccCCCC
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLK---TLVMGCPKTIDGDLK 232 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~---i~VIGVPKTIDNDL~ 232 (566)
..|.+|++|||||...+. ..+.+...+ +++.-+|.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vv---n~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL---NALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHH---HHHHhcccccCCCcEEEeCCCChhHHH
Confidence 467999999999987764 223323322 678888987788887
No 151
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=39.76 E-value=37 Score=32.70 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=39.2
Q ss_pred HHHHHHHHHHH---cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 176 QFKQATETAVK---LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 176 ~~~~~~~~l~~---l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
+..-+++.++- -++|.++++-||+=.+- |++.++++|..+-++|+|+....+|
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L 145 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFSTAL 145 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHH
Confidence 45566666554 68999999999998765 5566777898888999886544444
No 152
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=39.57 E-value=40 Score=32.68 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHH
Q 008424 183 TAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250 (566)
Q Consensus 183 ~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~s 250 (566)
.+.+++.|++|+-||.|+-..+..-.+.+++...+++|.| .|+|+.-.+..+-
T Consensus 38 ~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLG---------------IC~G~Qll~~~~G 90 (188)
T TIGR00566 38 EIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILG---------------VCLGHQAMGQAFG 90 (188)
T ss_pred HHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEE---------------ECHHHHHHHHHcC
Confidence 3466889999999999886553221222222123578888 4999998887754
No 153
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=39.02 E-value=92 Score=28.45 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=58.1
Q ss_pred CCEEEEEccChhhhcCC-CE---------EecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Q 008424 126 GSVLYGFRGGPAGIMKC-KY---------VELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVI 195 (566)
Q Consensus 126 ~~~v~Gf~~G~~GLl~~-~~---------~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviI 195 (566)
..-+++.=+|..=+.+. .+ =-++++..+.|++.|- .++-.. .| +..+++++++.+.+++.+-++++
T Consensus 16 ~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~-~~~~~p-~k--D~TD~e~Al~~~~~~~~~~i~v~ 91 (123)
T PF04263_consen 16 ADFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGV-EIIHFP-EK--DYTDLEKALEYAIEQGPDEIIVL 91 (123)
T ss_dssp TSEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTT-EEEEE--ST--TS-HHHHHHHHHHHTTTSEEEEE
T ss_pred CCEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhcc-ceeccc-cc--ccCHHHHHHHHHHHCCCCEEEEE
Confidence 45667777777777665 32 2334445556666644 355443 33 45689999999999999999999
Q ss_pred CCch-----hHHHHHHHHHHHhhcCCCceEE
Q 008424 196 GGDD-----SNTNACLLAEHFRSKNLKTLVM 221 (566)
Q Consensus 196 GGdd-----S~t~A~~Lae~~~~~~~~i~VI 221 (566)
|+-| ++.+...|.++. +.++++.+|
T Consensus 92 Ga~GgR~DH~lanl~~l~~~~-~~~~~i~li 121 (123)
T PF04263_consen 92 GALGGRFDHTLANLNLLYKYK-KRGIKIVLI 121 (123)
T ss_dssp S-SSSSHHHHHHHHHHHHHHH-TTTSEEEEE
T ss_pred ecCCCcHHHHHHHHHHHHHHH-HcCCeEEEE
Confidence 9966 566666666664 456554443
No 154
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=39.01 E-value=5.9e+02 Score=28.40 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=91.0
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
..+||.-. ||-=-+||.+.++..+. .+.-| .+|-|.+.|+.+ ||. -| . |+
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY--TG-----m-tP 64 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALA--NDSPL--------------LIEATSNQVDQF---GGY--TG-----M-TP 64 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc--CC-----C-CH
Confidence 34577653 45555899998877543 34443 588999999998 884 22 2 56
Q ss_pred HHHH-HHHHHHHHcCCCE-EEEeCCc-------------hhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCC
Q 008424 175 EQFK-QATETAVKLDLDG-LVVIGGD-------------DSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPAS 239 (566)
Q Consensus 175 e~~~-~~~~~l~~l~Id~-LviIGGd-------------dS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S 239 (566)
.+|. -+.+..++.+++. .+|+||| ..|..|..|.+.+.+.|+ .-|++=.|++ ..++. ..
T Consensus 65 ~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--cagdp--~p 138 (426)
T PRK15458 65 ADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGF--KKIHLDCSMS--CADDP--IP 138 (426)
T ss_pred HHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--CCCCC--CC
Confidence 6664 4566678899998 9999996 467888888877777886 4778777777 44444 57
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 008424 240 FGFDTACKIYAEMIGNVMI 258 (566)
Q Consensus 240 ~GFdTA~k~~se~I~ni~~ 258 (566)
+.=++.++-.++++.-.-.
T Consensus 139 L~d~~vA~Raa~L~~~aE~ 157 (426)
T PRK15458 139 LTDEIVAERAARLAKIAEE 157 (426)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 7779999999988875443
No 155
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.58 E-value=3.9e+02 Score=26.15 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=51.3
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
|||||..--.-|-...++.|+-+.+++. +.++. +..+ .. -.+++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~-~~-~~~~~ 44 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKEL--GVKVT--------------------------------FQGP-AS-ETDVA 44 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHc--CCEEE--------------------------------EecC-cc-CCCHH
Confidence 6888886545677788888888876542 22221 0000 00 11344
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
...+.++.+...++|++++.+.+.... ...+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~~~-~~~l-~~~~~~~--ipvV~~ 88 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAKAL-VPPL-KEAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChhhh-HHHH-HHHHHCC--CCEEEe
Confidence 556777888889999999988764321 1233 3334444 566665
No 156
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=38.16 E-value=85 Score=32.41 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCEEEEe-----CCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 179 QATETAVKLDLDGLVVI-----GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 179 ~~~~~l~~l~Id~LviI-----GGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
.+++.+-.++.|-.|.| +|-|+..+|..|+.++++.++++-+.|- .|+|+|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 56777778999987777 4669999999999999998888877774 77888764
No 157
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.89 E-value=1.4e+02 Score=28.99 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+...+.++.+...++|++++.+.+.+... .+ +.+.+.| ++||.+
T Consensus 42 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~--~~-~~~~~~~--ipvV~~ 85 (268)
T cd06289 42 ERQEQLLSTMLEHGVAGIILCPAAGTSPD--LL-KRLAESG--IPVVLV 85 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCccHH--HH-HHHHhcC--CCEEEE
Confidence 44456778888899999999987654322 22 3344444 567765
No 158
>PRK00861 putative lipid kinase; Reviewed
Probab=37.70 E-value=52 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.++.....+.|.+|++|||||...+.. .+... ++++--+|.===||+. .++|...
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~~--~~~lgviP~GTgNdfA-----r~lgi~~ 103 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGDGTLSAVAG---ALIGT--DIPLGIIPRGTANAFA-----AALGIPD 103 (300)
T ss_pred HHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhcC--CCcEEEEcCCchhHHH-----HHcCCCC
Confidence 34444455677899999999999766542 22222 4567778877778876 5677654
No 159
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=37.51 E-value=59 Score=34.38 Aligned_cols=66 Identities=26% Similarity=0.460 Sum_probs=48.2
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+...||+++.--..|=-..++.|+-+.+... +..+ +|..+..
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~~---------------------------------~l~~~~~--- 98 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREA--GYSL---------------------------------LLANTDD--- 98 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEE---------------------------------EEECCCC---
Confidence 4467888887655677778888888776542 2222 3444443
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIG 196 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIG 196 (566)
+++..+.+++.+...++||+|+.|
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec
Confidence 567788999999999999999999
No 160
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=37.45 E-value=4e+02 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNL 216 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~ 216 (566)
+++..+.+++.++++++|+++. +-+......+.+++.+.+.|.
T Consensus 54 ~~~~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 54 DPNYIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred ChhHHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 3456788899999999997654 566666666677777776653
No 161
>PRK04155 chaperone protein HchA; Provisional
Probab=37.29 E-value=2.5e+02 Score=29.45 Aligned_cols=39 Identities=8% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHH--HcCCCEEEEeCCchhHHH------HHHHHHHHhhcC
Q 008424 177 FKQATETAV--KLDLDGLVVIGGDDSNTN------ACLLAEHFRSKN 215 (566)
Q Consensus 177 ~~~~~~~l~--~l~Id~LviIGGddS~t~------A~~Lae~~~~~~ 215 (566)
++.+.+.+. ..+.|++|+-||-+.+.. +..|...|.+++
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~ 180 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND 180 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC
Confidence 444444444 468899999999887553 445555555555
No 162
>PRK05637 anthranilate synthase component II; Provisional
Probab=37.08 E-value=62 Score=32.15 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHH
Q 008424 183 TAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250 (566)
Q Consensus 183 ~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~s 250 (566)
.+.+.+.|++|+-||-++-..+....+.++...-+++|.| .|+|+...+..+.
T Consensus 39 ~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLG---------------IClG~Qlla~alG 91 (208)
T PRK05637 39 EILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLG---------------ICLGFQALLEHHG 91 (208)
T ss_pred HHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEE---------------EcHHHHHHHHHcC
Confidence 3446789999999999999887554444432222577887 4999998888754
No 163
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=36.56 E-value=1.6e+02 Score=32.58 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL---DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l---~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+. ...+||-.
T Consensus 121 tp~~w~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l~~-~~kPVVlT 173 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFET-LPVPVVLV 173 (404)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEecCChhHHHHHHHHHHHhhC-CCCCEEEE
Confidence 566776666666554 589999999999998765544444433 23355543
No 164
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=36.29 E-value=4.2e+02 Score=27.67 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||++..+-..|--+.++.|+-+.+++. +..+. +.++. .
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--g~~l~---------------------------------i~~~~---~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVF---------------------------------VQSAN---G 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---C
Confidence 4689999999999999999999999987643 23322 11111 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
++++..+.++.+...++|++++.+.+.+. ....+ +.+.+.+ ++||.+-..+
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~~~~~-~~~~l-~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPYNGQV-LSNVI-KEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhh-HHHHH-HHHHHCC--CeEEEECCCC
Confidence 34556677888889999999999865321 11223 3333444 6777764444
No 165
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.09 E-value=30 Score=36.60 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC-CCCCC-CCCCCChHHHHHHHHHH
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD-LKCKE-VPASFGFDTACKIYAEM 252 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND-L~~~~-ie~S~GFdTA~k~~se~ 252 (566)
.+++.+++.|-+ ..|.++||||-.|. |..+|++-+++.+.++-.|-=+.=||-+ +.+.. |-.|=|-.|=-..+-+.
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~Ss-NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSS-NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 455565665544 79999999999985 4577889888887777777777766633 33221 22344555555555555
Q ss_pred HHHH
Q 008424 253 IGNV 256 (566)
Q Consensus 253 I~ni 256 (566)
+..|
T Consensus 276 ~~~l 279 (298)
T PRK01045 276 IARL 279 (298)
T ss_pred HHHH
Confidence 5444
No 166
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=36.06 E-value=1.7e+02 Score=28.82 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=53.2
Q ss_pred CEEEEEccChhhhcCCCE---------EecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Q 008424 127 SVLYGFRGGPAGIMKCKY---------VELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGG 197 (566)
Q Consensus 127 ~~v~Gf~~G~~GLl~~~~---------~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGG 197 (566)
..+++.=+|..=+++..+ =-++++..+.|.. .|..++--...| +..++++|++.+.+++.+-++++|+
T Consensus 19 ~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~-~~~~~~~~~~eK--D~TD~e~Al~~~~~~~~~~i~i~Ga 95 (203)
T TIGR01378 19 DLVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKK-AGVKIIVFPPEK--DTTDLELALKYALERGADEITILGA 95 (203)
T ss_pred CEEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHH-cCCceEEcCCCC--CCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 368899999887776542 2333444444543 344344333333 4568999999999999999999998
Q ss_pred ch-----hHHHHHHHHHH
Q 008424 198 DD-----SNTNACLLAEH 210 (566)
Q Consensus 198 dd-----S~t~A~~Lae~ 210 (566)
-| ++.+...|..+
T Consensus 96 ~GgR~DH~lani~~L~~~ 113 (203)
T TIGR01378 96 TGGRLDHTLANLNLLLEY 113 (203)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 55 45666666655
No 167
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=35.94 E-value=2.1e+02 Score=26.58 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHcC---CCEEEEeCC-chhHHHHHHHHHHHhhcCCC
Q 008424 173 TPEQFKQATETAVKLD---LDGLVVIGG-DDSNTNACLLAEHFRSKNLK 217 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~---Id~LviIGG-ddS~t~A~~Lae~~~~~~~~ 217 (566)
+.+.+.++++.+++++ +...+++|= .++......+.+++.+.+..
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4578888899999999 555566763 46788888888888877765
No 168
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=35.91 E-value=67 Score=35.90 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecccc
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTID 228 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTID 228 (566)
+.+.++..|-+-.+|.+|||||-.|. |...|+|-+++.|.++--|-=|.-|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSS-NT~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSS-NTSHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHHhCCCEEEECCHHHcC
Confidence 44555555544579999999999874 44678888888887776776677676
No 169
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=35.75 E-value=73 Score=34.95 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
.+.+.+++.|-+.++|.+|||||-.|. |...|++-+++.+.++-.|-=+.=||-+
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSS-NT~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSS-NTTHLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 456666777766689999999999874 5578999988887777777777777653
No 170
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=35.29 E-value=79 Score=32.70 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHH
Q 008424 172 ETPEQFKQATETAVKLDLD---GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKI 248 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id---~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~ 248 (566)
++-+.++++.+.+.+.+++ .+|.+||--..+-|-..|.-+. + .++.|-||-|+-. .+|.|+|--||+++
T Consensus 10 Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~-R--Gi~~i~vPTTLLa-----~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 10 KSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYM-R--GIPFIQVPTTLLA-----QVDSSIGGKTGVNF 81 (260)
T ss_dssp SSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBT-T----EEEEEE-SHHH-----HHTTTSSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHc-c--CCceEeccccHHH-----HHhcccCCCeeeeC
Confidence 4567889999999999995 9999999888777777766543 2 5789999998754 23366766666543
Q ss_pred HHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHH
Q 008424 249 YAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICK 319 (566)
Q Consensus 249 ~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~ 319 (566)
...++-+ +.=.+|..|+|--+... ..+-+++..-++++|+-
T Consensus 82 ------------~~~KN~i-----------------G~f~~P~~V~iD~~~l~-tL~~~e~~~G~aEiiK~ 122 (260)
T PF01761_consen 82 ------------PGGKNLI-----------------GTFYQPEAVLIDPSFLK-TLPPREIRSGLAEIIKY 122 (260)
T ss_dssp ------------TTEEEEE-----------------EEE---SEEEEEGGGGG-GS-HHHHHHHHHHHHHH
T ss_pred ------------CCCCCcc-----------------cccCCCceeEEcHHHHh-hccHHHHHhCHHHHHHH
Confidence 1222211 12236888888666542 34445555666665544
No 171
>PRK12361 hypothetical protein; Provisional
Probab=35.15 E-value=48 Score=37.60 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
.....+.+.+.+.|.+|++|||||...+.. .+.. .++++--+|.==-||+.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~--~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVAS---ELVN--TDITLGIIPLGTANALS 336 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhc--CCCCEEEecCCchhHHH
Confidence 344455555677899999999999777642 2222 24567778877788887
No 172
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=34.97 E-value=1.4e+02 Score=29.19 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=59.8
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
.||||+..-..|-...++.|+-+.+++. +..+.-+ .+ . .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~--------------------------------~~---~-~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--GYSTIIG--------------------------------NS---D-ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--CCEEEEE--------------------------------eC---C-CCHH
Confidence 3788888777788888888988876542 2333211 01 0 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
.....++.+...++|++++.+.+.+.. .+ +.+.+++ ++||. +|++.....+ .+++.|
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~l~~~~--ipvV~----~~~~~~~~~~-~~v~~d 99 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAE---QL-EDLLKRG--IPVVF----VDREITGSPI-PFVTSD 99 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCChH---HH-HHHHhCC--CCEEE----EecccCCCCC-CEEEEC
Confidence 556778889999999999998765432 22 4445555 45664 3555433221 345555
No 173
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=34.90 E-value=88 Score=32.07 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=59.8
Q ss_pred EEEEEccChhhhcCCCEEecCcccccchhccCCccccc--cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHH---
Q 008424 128 VLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMIC--SGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNT--- 202 (566)
Q Consensus 128 ~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--SsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t--- 202 (566)
.-+-+-+|..|- ...-+......+++.+|...+- |+|.. +..+++..+..+..++|+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g~----~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~ 103 (274)
T cd00537 30 DFVSVTDGAGGS----TRDMTLLAAARILQEGGIEPIPHLTCRDR--NRIELQSILLGAHALGIRNILALRGDPPKGGDQ 103 (274)
T ss_pred CEEEeCCCCCCc----hhhhHHHHHHHHHHhcCCCeeeecccCCC--CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCC
Confidence 344555555541 2223344556677777765443 45555 458899999999999999999998876543
Q ss_pred ---------HHHHHHHHHhhc---CCCceEEEee
Q 008424 203 ---------NACLLAEHFRSK---NLKTLVMGCP 224 (566)
Q Consensus 203 ---------~A~~Lae~~~~~---~~~i~VIGVP 224 (566)
.|..|-+..++. +..+.|.+-|
T Consensus 104 ~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 104 PGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 477787877764 3445555555
No 174
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.73 E-value=1.5e+02 Score=29.28 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCEEEEeC
Q 008424 179 QATETAVKLDLDGLVVIG 196 (566)
Q Consensus 179 ~~~~~l~~l~Id~LviIG 196 (566)
.+.+.+++++.|.+|+.|
T Consensus 71 ~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHhCcCEEEhHH
Confidence 456667778888766543
No 175
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=34.55 E-value=5.7e+02 Score=26.94 Aligned_cols=106 Identities=11% Similarity=-0.043 Sum_probs=63.2
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+|+++......|=...+..|+-+.++.+ +.++. + .+.+ .. +
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--G~~v~-~-------------------------------~~~~--~~-d 65 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKEL--GVDVT-Y-------------------------------DGPT--EP-S 65 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCEEE-E-------------------------------ECCC--CC-C
Confidence 368999999999999999999999887542 23322 0 0111 11 2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.-...++.+...++|++++..-|.. .-...| +.+.+.| |+||. +|.|...+.....+|.++
T Consensus 66 ~~~q~~~i~~li~~~vdgIiv~~~d~~-al~~~l-~~a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~ 128 (336)
T PRK15408 66 VSGQVQLINNFVNQGYNAIIVSAVSPD-GLCPAL-KRAMQRG--VKVLT----WDSDTKPECRSYYINQGT 128 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHH-HHHHHCC--CeEEE----eCCCCCCccceEEEecCC
Confidence 233346788888999999999865533 222333 2334444 66775 566654333223455443
No 176
>PRK11096 ansB L-asparaginase II; Provisional
Probab=34.54 E-value=93 Score=33.57 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHH--cCCCEEEEeCCchhHHHHHHHHHHHhh
Q 008424 173 TPEQFKQATETAVK--LDLDGLVVIGGDDSNTNACLLAEHFRS 213 (566)
Q Consensus 173 ~~e~~~~~~~~l~~--l~Id~LviIGGddS~t~A~~Lae~~~~ 213 (566)
+++++.++.+.+++ .+.|++||.-|.|||...+.+-..+..
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~~~ 125 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVK 125 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHhcc
Confidence 56777777777766 579999999999999887765555543
No 177
>CHL00101 trpG anthranilate synthase component 2
Probab=34.54 E-value=49 Score=32.11 Aligned_cols=50 Identities=10% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHH
Q 008424 184 AVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKI 248 (566)
Q Consensus 184 l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~ 248 (566)
+.+++.|++|+.||.++-.......+..+....+++|+| .|+|+.-.+..
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLG---------------IClG~Qlla~~ 88 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILG---------------VCLGHQSIGYL 88 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEE---------------EchhHHHHHHH
Confidence 456789999999999987553322222111223567777 49999887764
No 178
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=34.34 E-value=3.6e+02 Score=27.03 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=75.8
Q ss_pred ccCCCeEEEecCCCCccCCCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcC-------CCEE
Q 008424 73 LFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK-------CKYV 145 (566)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~-------~~~~ 145 (566)
+...|.+-|..++.+ ......|+||=+--+.+-+..+...+...+.+ ..-.-|-|+-.|.+.... +..+
T Consensus 26 i~~~P~~Lf~~Gn~~---ll~~~~iaIvGsR~~s~~~~~~a~~l~~~l~~-~g~~IVSG~A~GiD~~ah~~al~~~g~tI 101 (220)
T TIGR00732 26 IYDPPPVLFYKGDLP---LLSQRKVAIVGTRRPTKYGERWTRKLAEELAK-NGVTIVSGLALGIDGIAHKAALKVNGRTI 101 (220)
T ss_pred CCCCCceEEEECCcc---cccCCeEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCEEEcCchhhHHHHHHHHHHHcCCCEE
Confidence 345788889988522 12236788887777788777777777776643 212234455555554221 1222
Q ss_pred ecC------------cccccchhccCCccccccCCCCCCC---HHHHHHHHHHHHHcCCCEEEEeCC---chhHHHHHHH
Q 008424 146 ELT------------SNYIYPYRNQGGFDMICSGRDKIET---PEQFKQATETAVKLDLDGLVVIGG---DDSNTNACLL 207 (566)
Q Consensus 146 eLt------------~~~v~~~~n~GG~~~LGSsR~k~~~---~e~~~~~~~~l~~l~Id~LviIGG---ddS~t~A~~L 207 (566)
-+- .+..+.+...||. +| | .+.+.+ ...|. ....+..-==+++|+++. .||+.+|.
T Consensus 102 aVl~~gld~~yp~~n~~l~~~i~~~ggl-li-S-e~p~~~~~~~~~f~-~RNriia~ls~~vivve~~~~sGtl~ta~-- 175 (220)
T TIGR00732 102 AVLGTGLDQIYPRQNSKLAAKIAENGGL-LL-S-EYPPDTKPIKYNFP-KRNRIISGLSRAVLVVEAPLKSGALITAR-- 175 (220)
T ss_pred EEECCCCccCCchhhHHHHHHHHHcCCE-EE-E-ecCCCCCCCcccHH-HHHHHHHHhcCEEEEEECCCCCchHHHHH--
Confidence 111 1223344456764 44 2 222211 12221 122222222378888886 46665554
Q ss_pred HHHHhhcCCCceEEEeeccccC
Q 008424 208 AEHFRSKNLKTLVMGCPKTIDG 229 (566)
Q Consensus 208 ae~~~~~~~~i~VIGVPKTIDN 229 (566)
++.+.| -.|.++|..|++
T Consensus 176 --~A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 176 --YALEQG--REVFAYPGDLNS 193 (220)
T ss_pred --HHHHhC--CcEEEEcCCCCC
Confidence 333344 479999998875
No 179
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=34.09 E-value=84 Score=35.36 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHH-HHHHHH-hhcCCCceEEEeeccccCCCCC
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNAC-LLAEHF-RSKNLKTLVMGCPKTIDGDLKC 233 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~-~Lae~~-~~~~~~i~VIGVPKTIDNDL~~ 233 (566)
-...++.+...+.|.+|++|||||...+. -|.+.- .+.+.++++--||.==-||+.-
T Consensus 157 A~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 34444555556789999999999976543 343210 0114467888899988999873
No 180
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.40 E-value=33 Score=35.93 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
.+++.++..| .-..|.++||||-.|. |..+|++-+++.+.++-.|-=|.=||-|
T Consensus 197 ~~RQ~a~~~L-a~~vD~miVVGg~~Ss-NT~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 197 KKRQESAKEL-SKEVDVMIVIGGKHSS-NTQKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hhHHHHHHHH-HHhCCEEEEecCCCCc-cHHHHHHHHHHHCCCEEEECChHHCCHH
Confidence 4556666666 4579999999999884 4467888888877667777767766644
No 181
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=33.30 E-value=1e+02 Score=35.22 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcC---CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLD---LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~---Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+-+..+++.+.+.+.+ -|.+|-|||--.++.|..+|--+. + ++++|-||-|+
T Consensus 251 sl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~-r--Gi~~i~vPTTl 305 (542)
T PRK14021 251 TIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWM-R--GIRYVNCPTSL 305 (542)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHH-c--CCCEEEeCChH
Confidence 4567778888888884 899999999988888888876332 2 47899999986
No 182
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=33.20 E-value=4.6e+02 Score=25.41 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
.||||+.+-+.|--..++.|+-+.+++. +..+. +..+... +++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~--~~~~~--------------------------------~~~~~~~---~~~ 43 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREA--GYAVT--------------------------------LSMLAEA---DEE 43 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHC--CCeEE--------------------------------EEeCCCC---chH
Confidence 3789998888888888888888887653 33322 1111111 123
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
...+.++.+.+.++|++++.+-+.+.. + +.+ +.+.+ ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~ 85 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFV 85 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEE
Confidence 455667888899999999998765543 2 222 23445 456655
No 183
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.19 E-value=72 Score=29.08 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
-.+++.....++|.+|++.||+-+.-+. +.++++|.++.|++.+.....+|
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccCccChHHH
Confidence 3456666667999999999999776654 44566788888888873333333
No 184
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=33.01 E-value=3.9e+02 Score=28.18 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccC
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDG 229 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDN 229 (566)
+..++...++.+.+.+|.-||-.+|.. ..||-+++..|++ .+|.+|.+++.
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~g-~alA~~a~~~G~~-~~i~vp~~~~~ 102 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNHA-RQTAAAAAKLGLK-CVLLLENPVPT 102 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHHH-HHHHHHHHHhCCc-EEEEEcCCCCc
Confidence 444556666788899998776666655 3466777778887 55669988774
No 185
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=32.72 E-value=44 Score=32.34 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=33.7
Q ss_pred HHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 184 AVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 184 l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
+++++.|++|+-||.++-.......+.++....+++|+| .|+|++.-+..+
T Consensus 39 ~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLG---------------IC~G~Qlla~~~ 89 (191)
T PRK06774 39 IEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILG---------------VCLGHQALGQAF 89 (191)
T ss_pred HHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEE---------------ECHHHHHHHHHh
Confidence 466899999999999986554332222222223577887 399998776654
No 186
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=32.72 E-value=62 Score=30.84 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
++++.+.+.++++++.+.+.+|.+-|-. +.-+-.++-. ...+|||||-
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~~-a~Lpgvva~~-----t~~PVIgvP~ 86 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGMS-AALPGVVASL-----TTLPVIGVPV 86 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHH-----SSS-EEEEEE
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCCc-ccchhhheec-----cCCCEEEeec
Confidence 3677888888888888888777766653 3334445443 3679999994
No 187
>PRK07591 threonine synthase; Validated
Probab=32.67 E-value=1.4e+02 Score=32.84 Aligned_cols=114 Identities=15% Similarity=0.136 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC------CCCCCCCCCC-ChHHHHHHHH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD------LKCKEVPASF-GFDTACKIYA 250 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND------L~~~~ie~S~-GFdTA~k~~s 250 (566)
..++..+++.+.+.++ .+..| |+ +..||-|.+..|++ ++|.||.++... ..+-.+...- .||.|.+...
T Consensus 126 ~~~v~~A~~~g~~~vv-~aSsG-N~-g~alA~~aa~~Gl~-~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~ 201 (421)
T PRK07591 126 SVALTAARELGFTTVA-CASTG-NL-ANSVAAHAARAGLD-SCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCS 201 (421)
T ss_pred HHHHHHHHHcCCCEEE-EeCCC-HH-HHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 3445667778888875 44443 43 45577888888987 677799876521 1111221222 3666666655
Q ss_pred HHHHHH-HHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcC---CcEEEeCCch
Q 008424 251 EMIGNV-MIDARSTGKYYHFVRLMGRAASHITLECALQTH---PNITIIGEEV 299 (566)
Q Consensus 251 e~I~ni-~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~---pnivlIpEe~ 299 (566)
++..+. ..-..+....-|++| | .+.++.|..-|.+ ||.+++|=--
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~ie--G--~~Tia~Ei~eQl~~~~pD~iv~pvG~ 250 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYYAE--G--SKTLGYEVAEQLGWRLPDQVVAPLAS 250 (421)
T ss_pred HHHHhcCCEEEecCCCCccccc--c--hHHHHHHHHHHcCCCCCCEEEEeCCc
Confidence 554332 000000001123343 2 3457899998864 8899888664
No 188
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=32.56 E-value=94 Score=33.52 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=67.8
Q ss_pred EeCCCCCch-hhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCc-cccccCCCCCCCHHHH
Q 008424 100 VLSGGQAPG-GHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGF-DMICSGRDKIETPEQF 177 (566)
Q Consensus 100 v~sGG~aPG-~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~-~~LGSsR~k~~~~e~~ 177 (566)
+++||-+.| ++.+ .+.+.+++..++.+++|.-+ .. +...-++. .-++..+.- .|+ ..|..- +.-..-+
T Consensus 9 ~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg-~~--m~~~g~~~-~~~~~~l~v-~G~~~~l~~~---~~~~~~~ 78 (385)
T TIGR00215 9 ALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAG-PR--MAAEGCEV-LYSMEELSV-MGLREVLGRL---GRLLKIR 78 (385)
T ss_pred EEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEcc-HH--HHhCcCcc-ccChHHhhh-ccHHHHHHHH---HHHHHHH
Confidence 344444444 5555 88888887777888888643 21 21111110 011111111 222 011110 1112346
Q ss_pred HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008424 178 KQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVM 257 (566)
Q Consensus 178 ~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~ 257 (566)
.++.+.+++.+.|.+|.+||-+-+-. ++...+..|+++ |+.||-.+ |- .. .-+.+.++..++.+.
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~---~a~aa~~~gip~-v~~i~P~~-wa---------w~-~~~~r~l~~~~d~v~ 143 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLT---KELKKKDPGIKI-IYYISPQV-WA---------WR-KWRAKKIEKATDFLL 143 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHH---HHHHHhhCCCCE-EEEeCCcH-hh---------cC-cchHHHHHHHHhHhh
Confidence 68889999999999999998553322 333334445442 23334322 11 11 123777777777776
Q ss_pred HH
Q 008424 258 ID 259 (566)
Q Consensus 258 ~D 259 (566)
..
T Consensus 144 ~~ 145 (385)
T TIGR00215 144 AI 145 (385)
T ss_pred cc
Confidence 43
No 189
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=31.90 E-value=5e+02 Score=28.60 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=94.0
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccCh---h--------h-----hc-CCCEEecCcccccc
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGP---A--------G-----IM-KCKYVELTSNYIYP 154 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~---~--------G-----Ll-~~~~~eLt~~~v~~ 154 (566)
-..+.-.|+++.|-.||+.-+|+++++ ++..|+--.-=| . . |. ++...+++.+.++.
T Consensus 79 ~~i~~e~i~~~p~VVpgi~~~I~~~T~------~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~ 152 (388)
T COG1168 79 WEIKPEWIVFVPGVVPGISLAIRALTK------PGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEK 152 (388)
T ss_pred CCCCcceEEEcCcchHhHHHHHHHhCc------CCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHH
Confidence 345667799999999999999999874 344433211000 0 0 11 22333444444443
Q ss_pred hhccC--CccccccCCC---CCCCHHHHHHHHHHHHHcCC-------CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEE
Q 008424 155 YRNQG--GFDMICSGRD---KIETPEQFKQATETAVKLDL-------DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMG 222 (566)
Q Consensus 155 ~~n~G--G~~~LGSsR~---k~~~~e~~~~~~~~l~~l~I-------d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIG 222 (566)
-...+ +.-+|++-.- ..-++|.+.++.+.|++|++ ++=++.+|. +...++.|++.++++ .+.+.+
T Consensus 153 ~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~~--~it~~s 229 (388)
T COG1168 153 AFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFADN--SITLTS 229 (388)
T ss_pred HHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhcc--eEEEee
Confidence 22222 2225544221 23478999999999999985 455778887 677788888877532 223333
Q ss_pred eeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcC
Q 008424 223 CPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH 289 (566)
Q Consensus 223 VPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~ 289 (566)
--|| =+|.+.. +|-..=+--+.=+....++........+. =|.+|.++|...+
T Consensus 230 aSKt--FNlaGL~--~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~----------lg~~A~~aAY~~G 282 (388)
T COG1168 230 ASKT--FNLAGLK--CAYIIISNRELRAKFLKRLKRNGLHGPSA----------LGIIATEAAYNQG 282 (388)
T ss_pred cccc--ccchhhh--heeEEecCHHHHHHHHHHHHHhcCCCCch----------HHHHHHHHHHHhc
Confidence 2333 2344333 22222222222233334443333222222 2778889998875
No 190
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=31.84 E-value=5.2e+02 Score=26.12 Aligned_cols=120 Identities=12% Similarity=0.023 Sum_probs=69.0
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+| .|.+.|.++.-+.|..+.++..+|+.+++... .| + ..
T Consensus 119 ~t~kVG~I-~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~------------------------~g------~----~~ 163 (258)
T cd06353 119 KTNKVGYV-AAFPIPEVVRGINAFALGARSVNPDATVKVIW------------------------TG------S----WF 163 (258)
T ss_pred cCCcEEEE-cCcccHHHHHHHHHHHHHHHHHCCCcEEEEEE------------------------ec------C----CC
Confidence 34578888 46678888888888888887777776654321 11 1 12
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEM 252 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~ 252 (566)
+++.-.++.+.+...+.|.++-.++. ..+. +.++++| +.+||+-.--+.+.+..- -.|+++-+...
T Consensus 164 D~~~a~~~a~~l~~~G~DvI~~~~~~---~g~~---~aa~~~g--~~~IG~d~dq~~~~~~~v------ltS~v~~~~~~ 229 (258)
T cd06353 164 DPAKEKEAALALIDQGADVIYQHTDS---PGVI---QAAEEKG--VYAIGYVSDMSKFAPKAV------LTSAVWNWGPY 229 (258)
T ss_pred CcHHHHHHHHHHHHCCCcEEEecCCC---hHHH---HHHHHhC--CEEEeeccchhhhCCCCE------EEEEeeehHHH
Confidence 33444566677778899988888621 2222 2233444 679998543333333211 23455555555
Q ss_pred HHHHHHHHh
Q 008424 253 IGNVMIDAR 261 (566)
Q Consensus 253 I~ni~~Da~ 261 (566)
+.++..++.
T Consensus 230 ~~~~~~~~~ 238 (258)
T cd06353 230 YVAAVKAVL 238 (258)
T ss_pred HHHHHHHHH
Confidence 555554444
No 191
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.80 E-value=2e+02 Score=31.70 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=60.8
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
..|+|||||||- .+.|.+.++.-+- ...|..+++-|. -.-+|=
T Consensus 133 ~~p~~I~viTs~-~gAa~~D~~~~~~----~r~p~~~~~~~~---------------------~~vQG~----------- 175 (438)
T PRK00286 133 FFPKRIGVITSP-TGAAIRDILTVLR----RRFPLVEVIIYP---------------------TLVQGE----------- 175 (438)
T ss_pred CCCCEEEEEeCC-ccHHHHHHHHHHH----hcCCCCeEEEec---------------------CcCcCc-----------
Confidence 457999999975 3445555555444 445655544222 011221
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh---cCCCceEE-EeeccccCC
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS---KNLKTLVM-GCPKTIDGD 230 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~---~~~~i~VI-GVPKTIDND 230 (566)
..+.++-++++.+.+.++|.+||+=|-||...-..+.++-.- ..++++|| ||=.-+|.=
T Consensus 176 ~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~t 238 (438)
T PRK00286 176 GAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFT 238 (438)
T ss_pred cHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCcc
Confidence 134566677777777668999999999998876544433221 25567775 555555543
No 192
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=31.16 E-value=1e+02 Score=33.46 Aligned_cols=39 Identities=31% Similarity=0.279 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~ 211 (566)
|...+.++++..++-+.|.+|-|||--.+++|...+-+.
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~A 150 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLA 150 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhh
Confidence 445688999999999999999999999888887766543
No 193
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=31.13 E-value=88 Score=34.51 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTID 228 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTID 228 (566)
...|.++.++.+.... |.++|.|||||.... ..--|++++-..+|--+|---|
T Consensus 102 ~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 102 NQGQAKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred cHHHHHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccc
Confidence 4566777777777777 999999999997664 4556676665666666665554
No 194
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=30.89 E-value=38 Score=30.48 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 179 QATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 179 ~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
.+.+.+.+...|.+|++-||+-+.-+. +.++++|.++-|++.|.....+|
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~~L 135 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASEAL 135 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-HHH
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCHHH
Confidence 334445445679999999998766544 55567798888898755444433
No 195
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.85 E-value=1.4e+02 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCEEEEeCCch-hHHHHHHHHHHHhhcC
Q 008424 180 ATETAVKLDLDGLVVIGGDD-SNTNACLLAEHFRSKN 215 (566)
Q Consensus 180 ~~~~l~~l~Id~LviIGGdd-S~t~A~~Lae~~~~~~ 215 (566)
+++..++.+-|.+++.+=++ ++..+..+.+.+++++
T Consensus 45 ~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred HHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 33444445555555544442 3444444555554443
No 196
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=30.49 E-value=5.2e+02 Score=25.24 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=54.7
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
||||++..-.-|....++.|+-+.++... ..|+ + ++ -++..+.. +.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~--------~~g~------~-~~---------------l~i~~~~~---~~~ 47 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELK--------KAGL------I-SE---------------FIVTSADG---DVA 47 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhh--------ccCC------e-eE---------------EEEecCCC---CHH
Confidence 68899988788888888888888765431 0011 0 00 01222221 234
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
...+.++.+...++|++++.+.+.... ...+ +.+.++ +++||.+-..
T Consensus 48 ~~~~~~~~~~~~~vdgiIi~~~~~~~~-~~~l-~~~~~~--~iPvv~~~~~ 94 (272)
T cd06300 48 QQIADIRNLIAQGVDAIIINPASPTAL-NPVI-EEACEA--GIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhh-HHHH-HHHHHC--CCeEEEEecC
Confidence 456777778888999999998763211 1122 334444 4678877443
No 197
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=30.37 E-value=99 Score=32.43 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecccc
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTID 228 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTID 228 (566)
.+++.+++.|-+ ..|.++||||-.|. |..+|++-+++.+.++-.|-=+.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSs-NT~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSS-NTTRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-hHHHHHHHHHHhCCCEEEECChHHCC
Confidence 456666666633 69999999999885 55778898888776555554444443
No 198
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=30.34 E-value=2e+02 Score=27.01 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHc-CCCEEEEeCCchhHHHHHHHHHHHhhcCC---CceEEEeec
Q 008424 175 EQFKQATETAVKL-DLDGLVVIGGDDSNTNACLLAEHFRSKNL---KTLVMGCPK 225 (566)
Q Consensus 175 e~~~~~~~~l~~l-~Id~LviIGGddS~t~A~~Lae~~~~~~~---~i~VIGVPK 225 (566)
+.++.+.+.+++. +.+++++.+. ..+..+.+++.+.|. ++.|++.--
T Consensus 168 ~~~~~~~~~l~~~~~~~~i~~~~~----~~a~~~~~~~~~~g~~~~~~~ii~~~~ 218 (269)
T cd01391 168 KGFQALLQLLKAAPKPDAIFACND----EMAAGALKAAREAGLTPGDISIIGFDG 218 (269)
T ss_pred ccHHHHHHHHhcCCCCCEEEEcCc----hHHHHHHHHHHHcCCCCCCCEEEeccc
Confidence 5677888888887 7888888765 233444455555564 577876543
No 199
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=30.27 E-value=76 Score=33.24 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhcCCeeEEEEEcCC-CCchHHHHhhhhcCCcEEEeC
Q 008424 248 IYAEMIGNVMIDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITIIG 296 (566)
Q Consensus 248 ~~se~I~ni~~Da~S~~k~~~fVevMGR-~ag~LALe~aLqt~pnivlIp 296 (566)
+++++-..+. +.+...+++.||=+||- +.||++|--.-...++.|+.+
T Consensus 6 ti~~lr~~~~-~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVS 54 (285)
T COG0414 6 TIAELRQAIK-ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVS 54 (285)
T ss_pred hHHHHHHHHH-HHHHcCCEEEEEcCCcccchHHHHHHHHHhhcCCeEEEE
Confidence 3444444444 67778888999999997 899999988777788887763
No 200
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=30.23 E-value=1.1e+02 Score=29.74 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=52.7
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
||+|..+-..|....++.|+-+.+++. +.+++-+. +.. +.+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~~---~~~~ 43 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAA--GYQLLLGN---------------------------------TGY---SPER 43 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHc--CCEEEEec---------------------------------CCC---Cchh
Confidence 789998888888988999998886542 33332111 111 1233
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
..+.++.+...++|++++.+-+.+.. .+ +.+.+. +++||.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~-~~~~~~--~ipvv~~ 84 (268)
T cd01575 44 EEELLRTLLSRRPAGLILTGLEHTER---TR-QLLRAA--GIPVVEI 84 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHH---HH-HHHHhc--CCCEEEE
Confidence 45677778889999999998775421 12 223333 4677776
No 201
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=30.12 E-value=1e+02 Score=32.63 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL--DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l--~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.+++. +.|++||+-|.|||...+.+-..+.+. .+.+||-.
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~~-l~kPVVlT 106 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLDN-LDKPVVLT 106 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEES--SSEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhcC-CCCCEEEe
Confidence 566766666666555 699999999999999866555555443 24456654
No 202
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=30.11 E-value=2.7e+02 Score=29.70 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=64.9
Q ss_pred EEEEeCCCCCchhhH--HHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCC-CCC-C
Q 008424 97 IGVVLSGGQAPGGHN--VISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGR-DKI-E 172 (566)
Q Consensus 97 IgIv~sGG~aPG~nn--vI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR-~k~-~ 172 (566)
--|+++||+ |=+.. .+..+++.+++. + .+.++.-|...... .-..+|++.++.+++.|= .++..+- ... +
T Consensus 161 ~eV~lsGGD-PLl~~d~~L~~ll~~L~~i-~--~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~-~~~~vsh~nh~~E 234 (331)
T TIGR00238 161 IEILISGGD-PLMAKDHELEWLLKRLEEI-P--HLVRLRIGTRLPVV-IPQRITDELCELLASFEL-QLMLVTHINHCNE 234 (331)
T ss_pred CEEEEECCc-cccCCHHHHHHHHHHHHhc-C--CccEEEeecCCCcc-CchhcCHHHHHHHHhcCC-cEEEEccCCChHh
Confidence 368899998 54433 477777777653 2 22233322221110 112356676676666542 2222221 111 2
Q ss_pred CHHHHHHHHHHHHHcCCC----EEEEeCCchhHHHHHHHHHHHhhcCC
Q 008424 173 TPEQFKQATETAVKLDLD----GLVVIGGDDSNTNACLLAEHFRSKNL 216 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id----~LviIGGddS~t~A~~Lae~~~~~~~ 216 (566)
..+...++++.|++.++. ..+.-|=+|+......|.+.+.+.|+
T Consensus 235 i~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 235 ITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred CCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 235677778888887754 45666778888888888888776654
No 203
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.10 E-value=3.9e+02 Score=25.16 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
++++++++++.+.+- +-++++|--.|...|..++..+...|. .+..++-....++
T Consensus 16 ~~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g~--~~~~~~~~~~~~~ 70 (179)
T TIGR03127 16 DEEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRLMHLGF--NVYVVGETTTPSI 70 (179)
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHHhCCC--eEEEeCCcccCCC
Confidence 578899999998764 578888877888777777777766554 4554444433333
No 204
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=30.04 E-value=56 Score=25.90 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHH
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNAC 205 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~ 205 (566)
+..++.+.+++++|| +..||+.|+..|+
T Consensus 11 ~~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 11 EDPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred HChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 456778999999999 5899999987775
No 205
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=30.00 E-value=85 Score=32.37 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=47.4
Q ss_pred cchhccCCccccc--cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhH----------HHHHHHHHHHhhc--CCCc
Q 008424 153 YPYRNQGGFDMIC--SGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSN----------TNACLLAEHFRSK--NLKT 218 (566)
Q Consensus 153 ~~~~n~GG~~~LG--SsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~----------t~A~~Lae~~~~~--~~~i 218 (566)
..+++.-|.+.+- |+|.+ +..+++..+..+..++|+.+++++||-+. ..|..|-+..++. ...+
T Consensus 51 ~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~i 128 (272)
T TIGR00676 51 RRIKKETGIPTVPHLTCIGA--TREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDI 128 (272)
T ss_pred HHHHHhcCCCeeEEeeecCC--CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeE
Confidence 3444443444332 56663 67889999999999999999999999872 3466666776654 3445
Q ss_pred eEEEee
Q 008424 219 LVMGCP 224 (566)
Q Consensus 219 ~VIGVP 224 (566)
-+.+.|
T Consensus 129 g~a~~P 134 (272)
T TIGR00676 129 GVAAYP 134 (272)
T ss_pred EEEeCC
Confidence 556656
No 206
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.75 E-value=73 Score=35.99 Aligned_cols=115 Identities=26% Similarity=0.304 Sum_probs=66.3
Q ss_pred CCEEecCccc---ccchhccCCccccccCCC-CCCCHHHHHHH-HHHHHHcCCCEEEEeCCchhHHHHH--HHHHHHhhc
Q 008424 142 CKYVELTSNY---IYPYRNQGGFDMICSGRD-KIETPEQFKQA-TETAVKLDLDGLVVIGGDDSNTNAC--LLAEHFRSK 214 (566)
Q Consensus 142 ~~~~eLt~~~---v~~~~n~GG~~~LGSsR~-k~~~~e~~~~~-~~~l~~l~Id~LviIGGddS~t~A~--~Lae~~~~~ 214 (566)
++|++|.+.. ++.++..|- -++..-. +..+.++++.. .+.+.++ +|+++|-||.|.--..- .-++|.+++
T Consensus 295 GKYv~l~DaY~Sv~EAL~hag~--~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yAREn 371 (533)
T COG0504 295 GKYVELPDAYKSVIEALKHAGI--ALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAIRYAREN 371 (533)
T ss_pred ECCcCchhHHHHHHHHHHhhhh--hcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHhc
Confidence 4677777754 344454433 2222111 11133343332 2344444 99999999999633322 234666665
Q ss_pred CCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCC----eeEEEEEcCCCC
Q 008424 215 NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGK----YYHFVRLMGRAA 277 (566)
Q Consensus 215 ~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k----~~~fVevMGR~a 277 (566)
+ ++..| .|+|++.|+=.+|.-+-.+ .+|.|+.- -+-||.+|.-..
T Consensus 372 ~--iP~lG---------------IClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~t~~pVv~l~~eq~ 420 (533)
T COG0504 372 N--IPFLG---------------ICLGMQLAVIEFARNVLGL-EGANSTEFDPDTKYPVVDLMPEQK 420 (533)
T ss_pred C--CCEEE---------------EchhHHHHHHHHHHHhcCC-ccCcccccCCCCCCceEEeccccc
Confidence 5 45666 4999999998888877766 47777531 124555555443
No 207
>PLN02735 carbamoyl-phosphate synthase
Probab=29.43 E-value=4.6e+02 Score=32.86 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEE-eCCchhHHHHHHHHHHHhhcC-------CCceEEEe
Q 008424 177 FKQATETAVKLDLDGLVV-IGGDDSNTNACLLAEHFRSKN-------LKTLVMGC 223 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~Lvi-IGGddS~t~A~~Lae~~~~~~-------~~i~VIGV 223 (566)
++.+++.|++.++|+++. +||+-.+.-|..+.+.+.+++ .++.++|-
T Consensus 638 ~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~ 692 (1102)
T PLN02735 638 VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGT 692 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECC
Confidence 778899999999999996 888888888888888776543 14667763
No 208
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=28.04 E-value=2.8e+02 Score=27.34 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+...+.++.+.+ ++|+++++..+.+.. ...+ +.+.+.+ ++||.+ |++..
T Consensus 46 ~~~~~~i~~~~~-~vdgiii~~~~~~~~-~~~i-~~~~~~~--ipvV~~----~~~~~ 94 (275)
T cd06307 46 AALAAALLRLGA-RSDGVALVAPDHPQV-RAAV-ARLAAAG--VPVVTL----VSDLP 94 (275)
T ss_pred HHHHHHHHHHHh-cCCEEEEeCCCcHHH-HHHH-HHHHHCC--CcEEEE----eCCCC
Confidence 334566677778 999999998764321 1223 4444444 456633 55543
No 209
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=27.83 E-value=6.7e+02 Score=25.62 Aligned_cols=88 Identities=24% Similarity=0.344 Sum_probs=55.8
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+...||+++..-..|-.+.++.|+.++++.. +..++ +..+. .
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 104 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEAQ--GRMVF---------------------------------LLQGG---K 104 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 3468999998888888899999999887542 22221 11111 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+.+.....++.+...++|++++.+.+.... .+.+.+++.+ ++||.+
T Consensus 105 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 105 DGEQLAQRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKG--IPVVFA 150 (342)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcC--CCEEEE
Confidence 234556778888899999999998764322 2223344444 566654
No 210
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.59 E-value=4e+02 Score=25.78 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=54.6
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
|||+...-..|-...++.|+.+.++.. +.++. +..+. .+. +
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~--g~~~~--------------------------------~~~~~----~~~-~ 42 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQAR--GYQPL--------------------------------LINTD----DDE-D 42 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHC--CCeEE--------------------------------EEcCC----CCH-H
Confidence 677777666777777888887776542 23322 00000 011 2
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
..+.++.+...++|++++.+.+.+- .. .+.+.+.| ++||.+ |.|.....+ .++|+|
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~~~---~~-~~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 98 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSS---EL-AEECRRNG--IPVVLI----NRYVDGPGV-DAVCSD 98 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCH---HH-HHHHhhcC--CCEEEE----CCccCCCCC-CEEEEC
Confidence 3456677788999999998876432 12 23344444 567766 444332222 356665
No 211
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.50 E-value=1.4e+02 Score=32.41 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=68.0
Q ss_pred EEEEeCCCCCchhh-HHHHHHHHHHHhhCCCC-------EE--EEEccChhhhcCCCE-Ee----cCcccccchhccCCc
Q 008424 97 IGVVLSGGQAPGGH-NVISGIYDYLQDRAKGS-------VL--YGFRGGPAGIMKCKY-VE----LTSNYIYPYRNQGGF 161 (566)
Q Consensus 97 IgIv~sGG~aPG~n-nvI~gl~~~l~~~~~~~-------~v--~Gf~~G~~GLl~~~~-~e----Lt~~~v~~~~n~GG~ 161 (566)
-||+++||==|=.| ..+..+++.++.. .+. .| .|+..+++-|.+.+. +- |..-+= ..|+.
T Consensus 162 ~~vVfmGmGEPL~N~d~v~~~l~~l~~~-~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~-e~r~~--- 236 (356)
T PRK14462 162 VNIVYMGMGEPLDNLDNVSKAIKIFSEN-DGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDD-ELRSE--- 236 (356)
T ss_pred CCeEEeCCcccccCHHHHHHHHHHhcCc-cCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCH-HHHHH---
Confidence 39999988788877 4455566665432 122 22 455555555554332 11 111111 11111
Q ss_pred cccccCC-CCCCCHHHHHHHHHHHHHcC----CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCC
Q 008424 162 DMICSGR-DKIETPEQFKQATETAVKLD----LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCK 234 (566)
Q Consensus 162 ~~LGSsR-~k~~~~e~~~~~~~~l~~l~----Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~ 234 (566)
+.+..+ +.+ ++-++.+.+.+++.+ |.+.+|=|=|||...|..|++.++..+ ..|=-+| .|++.+.
T Consensus 237 -l~pv~~~~~l--~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIP---yn~~~~~ 306 (356)
T PRK14462 237 -LMPINKAYNI--ESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIK--AKVNLIL---FNPHEGS 306 (356)
T ss_pred -hCCCCccCCH--HHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcC--cEEEEEe---CCCCCCC
Confidence 222222 222 111222222332333 788999999999999999999987554 5677777 5666543
No 212
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=27.30 E-value=8e+02 Score=26.37 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=62.1
Q ss_pred EEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc------ccCCCCCCCCCCCCChHHHHHHHHHHHHHHH---HHHh
Q 008424 191 GLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT------IDGDLKCKEVPASFGFDTACKIYAEMIGNVM---IDAR 261 (566)
Q Consensus 191 ~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT------IDNDL~~~~ie~S~GFdTA~k~~se~I~ni~---~Da~ 261 (566)
-+++-||.+..-..+.|++++++++.++.++|+-.. ++-..+.+.+ ...||....+.+..+...+. ....
T Consensus 8 i~i~aGgtsGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l-~v~G~~~~l~~~~~~~~~~~~~~~~l~ 86 (385)
T TIGR00215 8 IALVAGEASGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEEL-SVMGLREVLGRLGRLLKIRKEVVQLAK 86 (385)
T ss_pred EEEEeCCccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHh-hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766656999999988888999998642 1111222233 46788767776666555554 2222
Q ss_pred hcCCeeEEEEEcCCCCchHHH--HhhhhcCCcEEEeCCc
Q 008424 262 STGKYYHFVRLMGRAASHITL--ECALQTHPNITIIGEE 298 (566)
Q Consensus 262 S~~k~~~fVevMGR~ag~LAL--e~aLqt~pnivlIpEe 298 (566)
.. + --+|=.+|-.+..+.+ .+....-|-+.+||=+
T Consensus 87 ~~-k-Pd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~ 123 (385)
T TIGR00215 87 QA-K-PDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQ 123 (385)
T ss_pred hc-C-CCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCc
Confidence 22 2 3577788853435333 4444445666666533
No 213
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=27.07 E-value=3.8e+02 Score=26.10 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=44.2
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
|||++..-..|=...++.|+-++++.. +.++. +.-+. .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~--------------------------------~~~~~----~~~~~ 43 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQ--GYNLI--------------------------------LCNTE----GDPER 43 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHc--CCEEE--------------------------------EEeCC----CChHH
Confidence 788887777777788888888776542 33332 00011 12345
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchh
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDS 200 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS 200 (566)
..+.++.+...++|++++.+.+..
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 44 QRSYLRMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCC
Confidence 567788899999999999997654
No 214
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.06 E-value=2.9e+02 Score=27.74 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhh--------cCCCEEecCc--ccccchhccCCcccc
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGI--------MKCKYVELTS--NYIYPYRNQGGFDMI 164 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL--------l~~~~~eLt~--~~v~~~~n~GG~~~L 164 (566)
+|||||-.-|.+. .-+.+.+ ..+|++|.+|..-..=+ ++.++.+++. +++. |+|.+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA--~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~------g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEA--LKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLA------GHDAV 66 (211)
T ss_pred CeEEEEecCchhH------HHHHHHH--HhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhc------CCceE
Confidence 5799998877653 2344443 34689999988665433 3445556655 4433 34433
Q ss_pred ccCCCC--CCCH----HHHHHHHHHHHHcCCCEEEEeCCchhHHH
Q 008424 165 CSGRDK--IETP----EQFKQATETAVKLDLDGLVVIGGDDSNTN 203 (566)
Q Consensus 165 GSsR~k--~~~~----e~~~~~~~~l~~l~Id~LviIGGddS~t~ 203 (566)
=|.-.- .... ...+..++.++.-+..-|+|+||-||+.-
T Consensus 67 IsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 67 ISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 332211 1111 23556677888889999999999999654
No 215
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=27.02 E-value=7e+02 Score=25.54 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
...|||++..-+.|=...++.|+-+.++.. +.+++- ..+- .+
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~---------------------------------~~~~---~~ 100 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQK--GYTLIL---------------------------------CNAW---NN 100 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC---CC
Confidence 368999998877888888999998887543 333220 0100 12
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSN 201 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~ 201 (566)
.+...+.++.+.+.++||+++.+++.+.
T Consensus 101 ~~~~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 101 LEKQRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 3344566677888999999999876443
No 216
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.00 E-value=5.1e+02 Score=24.00 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCC
Q 008424 196 GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275 (566)
Q Consensus 196 GGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR 275 (566)
||.|.=|.|..||.++.+.|.++-+ ||-|+.++.+... +.. ......+..+..+.......|.||-+-++
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vll------vD~D~q~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~yD~VIiD~pp~ 78 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGL------LDADIYGPSIPKM--WRG--PMKMGAIKQFLTDVDWGELDYLVIDMPPG 78 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEE------EeCCCCCCCchHH--HhC--cchHHHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 8999999999999999998887555 5899987653111 110 01122333333232212233578888776
Q ss_pred CCchHHHHhhhhcCCcEEEeC
Q 008424 276 AASHITLECALQTHPNITIIG 296 (566)
Q Consensus 276 ~ag~LALe~aLqt~pnivlIp 296 (566)
... .++.......++.++++
T Consensus 79 ~~~-~~~~~~~~~~ad~viiV 98 (169)
T cd02037 79 TGD-EHLTLAQSLPIDGAVIV 98 (169)
T ss_pred CcH-HHHHHHhccCCCeEEEE
Confidence 533 33332211344555554
No 217
>PLN02335 anthranilate synthase
Probab=26.73 E-value=82 Score=31.55 Aligned_cols=50 Identities=8% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 185 VKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 185 ~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
..++.|++|+-||-++-......-+..++.+-+++|.| .|+||.-.+..+
T Consensus 59 ~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLG---------------IClG~QlLa~al 108 (222)
T PLN02335 59 KRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFG---------------VCMGLQCIGEAF 108 (222)
T ss_pred HhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEE---------------ecHHHHHHHHHh
Confidence 45689999999999987764433344444455577877 499999655533
No 218
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=26.65 E-value=3.3e+02 Score=30.18 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=60.7
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
..|++||||||- .+.+.+.++.- ++..+|..+++-|. -.-+|-.
T Consensus 127 ~~p~~i~vits~-~~aa~~D~~~~----~~~r~p~~~~~~~~---------------------~~vQG~~---------- 170 (432)
T TIGR00237 127 HFPKRVGVITSQ-TGAALADILHI----LKRRDPSLKVVIYP---------------------TLVQGEG---------- 170 (432)
T ss_pred CCCCEEEEEeCC-ccHHHHHHHHH----HHhhCCCceEEEec---------------------ccccCcc----------
Confidence 467899999974 44455555554 44445655554211 1113221
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEeCCchhHHHHHHHHHHHhh---cCCCceEE-EeeccccC
Q 008424 172 ETPEQFKQATETAVKLD-LDGLVVIGGDDSNTNACLLAEHFRS---KNLKTLVM-GCPKTIDG 229 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~-Id~LviIGGddS~t~A~~Lae~~~~---~~~~i~VI-GVPKTIDN 229 (566)
.+.++.++++.+...+ +|.+||+=|-||...-..+.++-.- ..++++|| ||=.-+|.
T Consensus 171 -a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 171 -AVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred -HHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 3455666666666544 8999999999999886666544322 26677776 45444443
No 219
>PRK09864 putative peptidase; Provisional
Probab=26.52 E-value=3.6e+02 Score=29.29 Aligned_cols=131 Identities=9% Similarity=0.114 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEcc-----Chhhhc------CCCE---EecCcc-cc---cch---hccCCccccc-cCC
Q 008424 111 NVISGIYDYLQDRAKGSVLYGFRG-----GPAGIM------KCKY---VELTSN-YI---YPY---RNQGGFDMIC-SGR 168 (566)
Q Consensus 111 nvI~gl~~~l~~~~~~~~v~Gf~~-----G~~GLl------~~~~---~eLt~~-~v---~~~---~n~GG~~~LG-SsR 168 (566)
+++..+.+.++. +...||+..- |.+|-. +.++ +|.+.. +. ... ...|+-.+|. ..+
T Consensus 181 ~~lle~l~~l~~--~~~~vy~v~TvQEEvGlrGA~~aa~~i~PDiaIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~~~D~ 258 (356)
T PRK09864 181 AMMAELLQTVNN--PEITLYGVGSVEEEVGLRGAQTSAEHIKPDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDK 258 (356)
T ss_pred HHHHHHHHHhhc--CCCeEEEEEEcchhcchHHHHHHHhcCCCCEEEEEecccCCCCCCCcccccccccCCCCeEEEccC
Confidence 344445555533 4577887664 777733 3443 343321 11 111 1234334662 234
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEE-EeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCC------
Q 008424 169 DKIETPEQFKQATETAVKLDLDGLV-VIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFG------ 241 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id~Lv-iIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~G------ 241 (566)
..+.++.-.+.+.+.+++++|..=+ +..|-||-.++..+ ...|+++-+|+||-= ++ ||+-
T Consensus 259 ~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~----~~~Gvpt~~isiP~R--------Y~-Hs~~e~~~~~ 325 (356)
T PRK09864 259 RYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNV----MGGGRPVVALCLPTR--------YL-HANSGMISKA 325 (356)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHH----hCCCCcEEEEeeccC--------cC-CCcceEeEHH
Confidence 5566788899999999999998776 45433554454433 245899999999941 11 2221
Q ss_pred -hHHHHHHHHHHHHHH
Q 008424 242 -FDTACKIYAEMIGNV 256 (566)
Q Consensus 242 -FdTA~k~~se~I~ni 256 (566)
++.+++.+..++.++
T Consensus 326 D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 326 DYDALLTLIRDFLTTL 341 (356)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 566667776666655
No 220
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.50 E-value=1.3e+02 Score=29.20 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=59.3
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
||||...-..|-...++.|+.+.++.. +..+.-+ .+ . .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~--~-~~~~~ 43 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAH--GYQVLVC---------------------------------NS--D-NDPEK 43 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cC--C-CCHHH
Confidence 788887778888999999999887643 2332100 00 0 12234
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
....++.+...++|++++.+.+..-. .+ +.+++.+ ++||.+ |.|+....+ .++|.|-
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d~ 100 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGV-DTVTLDN 100 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCC-CEEEecc
Confidence 45677778889999999998764322 23 3334444 567664 455443222 4666554
No 221
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.42 E-value=1.6e+02 Score=31.31 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHH----cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVK----LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~----l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.+++ -+.|++||.-|-|||...+.+-.+..+ +.+.+||-.
T Consensus 58 t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~-~l~kPVVlT 111 (323)
T smart00870 58 TPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLD-SLDKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhh-cCCCCEEEE
Confidence 56777777777665 479999999999999887665555443 323455543
No 222
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=26.18 E-value=1.5e+02 Score=32.10 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL----DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l----~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++..+.+.+++. +.|++||.-|.|||...+.+-....+. +.+||-.
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~~--~kPVVlT 138 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTVKS--DKPVVIV 138 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHHHHcCC--CCCEEEE
Confidence 566766666665543 699999999999998877655555443 3355543
No 223
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.56 E-value=4.7e+02 Score=32.47 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCEEEE-eCCchhHHHHHHHHHHHhhcCCCceEEEe-eccccC
Q 008424 177 FKQATETAVKLDLDGLVV-IGGDDSNTNACLLAEHFRSKNLKTLVMGC-PKTIDG 229 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~Lvi-IGGddS~t~A~~Lae~~~~~~~~i~VIGV-PKTIDN 229 (566)
.+.+++.|++.++|++++ +||+-.. .+++.+.+.| ++++|- |.+|+.
T Consensus 618 ~e~v~~i~~~e~~dgVi~~~g~~~~~----~la~~le~~G--i~ilg~s~~ai~~ 666 (1066)
T PRK05294 618 LEDVLEIIEKEKPKGVIVQFGGQTPL----KLAKALEAAG--VPILGTSPDAIDL 666 (1066)
T ss_pred HHHHHHHHHHcCCCEEEEEeCchhHH----HHHHHHHHCC--CceeCCCHHHHHH
Confidence 677888899999999998 6777654 3455555555 567775 467763
No 224
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.50 E-value=81 Score=28.31 Aligned_cols=47 Identities=23% Similarity=0.061 Sum_probs=25.5
Q ss_pred cchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCC-CEEEEeCCchh
Q 008424 153 YPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDL-DGLVVIGGDDS 200 (566)
Q Consensus 153 ~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~I-d~LviIGGddS 200 (566)
+.....+. ++++-|-..-...+..+..++.+++.+. +-.+++||...
T Consensus 44 ~~a~~~~~-d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 44 EAAIQEDV-DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHcCC-CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 33333433 4555443333345566666777777655 55667777654
No 225
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=25.09 E-value=94 Score=33.55 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~ 211 (566)
-+-+.++++.|++.+||.|+-+||--.++.+..+|-..
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a 108 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAA 108 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhhc
Confidence 46689999999999999999999998888888887543
No 226
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=24.99 E-value=5e+02 Score=27.44 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEE
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVM 221 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VI 221 (566)
...+++..++.+++.|+..||-.+|...+ ||-+++..|+++.|+
T Consensus 55 ~~~~l~~a~~~G~~~vvs~G~s~GN~g~a-lA~aa~~~G~~~~iv 98 (337)
T PRK12390 55 LEYLVPDALAQGADTLVSIGGVQSNHTRQ-VAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHH-HHHHHHHcCCeEEEE
Confidence 45666667789999999999888887754 777888889886554
No 227
>PLN02735 carbamoyl-phosphate synthase
Probab=24.87 E-value=3.2e+02 Score=34.14 Aligned_cols=107 Identities=22% Similarity=0.254 Sum_probs=59.1
Q ss_pred cCCCCCcEEEEEeCCCCCch--------hhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCC
Q 008424 89 VRSDEKLKIGVVLSGGQAPG--------GHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGG 160 (566)
Q Consensus 89 ~~~~~~~~IgIv~sGG~aPG--------~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG 160 (566)
....+.+||.|+-+|...-| +..++.+ |+. .|.+|+.+-.-+.-+..+ .+..+.+
T Consensus 18 ~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~ka----Lke--~G~~Vi~vd~np~t~~~~------~~~aD~~----- 80 (1102)
T PLN02735 18 GKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKA----LKE--EGYEVVLINSNPATIMTD------PETADRT----- 80 (1102)
T ss_pred CcccCCCEEEEECCCccccccceeecchHHHHHHH----HHH--cCCEEEEEeCCcccccCC------hhhCcEE-----
Confidence 44556789999999965444 4444444 433 367888665322111100 0001110
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEE-eCCchhHHHHHHHHH--HHhhcCCCceEEEee
Q 008424 161 FDMICSGRDKIETPEQFKQATETAVKLDLDGLVV-IGGDDSNTNACLLAE--HFRSKNLKTLVMGCP 224 (566)
Q Consensus 161 ~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~Lvi-IGGddS~t~A~~Lae--~~~~~~~~i~VIGVP 224 (566)
.+ -+.+. +.+.+.|++.++|+++. +||+.....|..|++ .+.+.| ++++|.+
T Consensus 81 --yi-----~p~~~---e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G--I~~~G~~ 135 (1102)
T PLN02735 81 --YI-----APMTP---ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG--VELIGAK 135 (1102)
T ss_pred --Ee-----CCCCH---HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC--CEEECCC
Confidence 01 11233 34667789999999996 588877777776763 333333 5566644
No 228
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=24.85 E-value=1e+03 Score=26.63 Aligned_cols=139 Identities=17% Similarity=0.263 Sum_probs=93.3
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
.+||.- -||-=-+||.+.++..+. .+.-| .++-|.+.|+.+ ||. -| . |+.
T Consensus 12 ~~gI~s---VCsahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY--TG-----m-tP~ 61 (420)
T TIGR02810 12 PRGIYS---VCSAHPLVLEAAIRRARA--SGTPV--------------LIEATSNQVNQF---GGY--TG-----M-TPA 61 (420)
T ss_pred CCeEEE---ECCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc--CC-----C-CHH
Confidence 456665 345556899998877543 33433 588999999998 884 22 2 566
Q ss_pred HHH-HHHHHHHHcCCCE-EEEeCCch-------------hHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCC
Q 008424 176 QFK-QATETAVKLDLDG-LVVIGGDD-------------SNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASF 240 (566)
Q Consensus 176 ~~~-~~~~~l~~l~Id~-LviIGGdd-------------S~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~ 240 (566)
+|. -+.+..++.+++. .+|+|||- .|..|..|.+.+.+.|+ .-|++=.|++ .. +...-+
T Consensus 62 dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--ca--~d~~~L 135 (420)
T TIGR02810 62 DFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGF--TKIHLDASMG--CA--GDPAPL 135 (420)
T ss_pred HHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--cc--CCCccC
Confidence 664 4566678899998 99999974 56677777777777786 4788777776 22 222567
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---hcCCeeEEE
Q 008424 241 GFDTACKIYAEMIGNVMIDAR---STGKYYHFV 270 (566)
Q Consensus 241 GFdTA~k~~se~I~ni~~Da~---S~~k~~~fV 270 (566)
.=++.++-.++++.-.-..+. ....-+|+|
T Consensus 136 ~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 136 DDATVAERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 788899999988885443333 222334566
No 229
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=24.62 E-value=1.4e+02 Score=31.61 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEE
Q 008424 173 TPEQFKQATETAVKL--DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMG 222 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l--~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIG 222 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+.+ .+||-
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~~--kPVVl 110 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEND--KPVVL 110 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcCC--CCEEE
Confidence 567777776666553 6999999999999988766555555443 34544
No 230
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.61 E-value=1.6e+02 Score=26.27 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEE
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMG 222 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIG 222 (566)
.++....+++.|.++++.++++..|.. ...+.+.++++| ++++|
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~----~~~~~~~a~~~g--i~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAE----SEELIEAAREAG--IRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS------HHHHHHHHHTT---EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchH----HHHHHHHHHHcC--CEEEe
Confidence 467889999999999999999999933 234445555555 56776
No 231
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=24.55 E-value=5.9e+02 Score=27.18 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=53.3
Q ss_pred HHhhCCCCEEEEEccChhh--hc--------CCCEEecCccc---ccchhccCC--ccccccCCCCCCCHHHHHHHHHHH
Q 008424 120 LQDRAKGSVLYGFRGGPAG--IM--------KCKYVELTSNY---IYPYRNQGG--FDMICSGRDKIETPEQFKQATETA 184 (566)
Q Consensus 120 l~~~~~~~~v~Gf~~G~~G--Ll--------~~~~~eLt~~~---v~~~~n~GG--~~~LGSsR~k~~~~e~~~~~~~~l 184 (566)
|+...-.....||.+|+.| +. ..++++++.+. +.-.....| +++.+.+ ..-++++++..++.+
T Consensus 46 L~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~G--p~is~~~~~~~l~~~ 123 (310)
T COG1105 46 LKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPG--PEISEAELEQFLEQL 123 (310)
T ss_pred HHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCC--CCCCHHHHHHHHHHH
Confidence 3345667899999999999 32 34566665442 222222111 1222221 123678888888888
Q ss_pred HH-cCCCEEEEeCC----chhHHHHHHHHHHHhhcCCCceEE
Q 008424 185 VK-LDLDGLVVIGG----DDSNTNACLLAEHFRSKNLKTLVM 221 (566)
Q Consensus 185 ~~-l~Id~LviIGG----ddS~t~A~~Lae~~~~~~~~i~VI 221 (566)
++ +.=+.+|++.| .=....-..|.+-++++|. +|+
T Consensus 124 ~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~--~vi 163 (310)
T COG1105 124 KALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGA--KVI 163 (310)
T ss_pred HHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCC--eEE
Confidence 87 55444455555 2233344455566666553 455
No 232
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=24.42 E-value=7.6e+02 Score=25.09 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
.+...++++.+...++|++++.+-+.. .....+ +.+++.+ ++||.+
T Consensus 40 ~~~q~~~i~~l~~~~vDgIIi~~~~~~-~~~~~l-~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 40 EAKQISQIENLIARGVDVLVIIPQNGQ-VLSNAV-QEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChh-HHHHHH-HHHHHCC--CeEEEe
Confidence 344567889999999999999875532 112223 3344444 577755
No 233
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=24.31 E-value=3.8e+02 Score=27.77 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcC-CcE-EEeCCchhhhhcchHhHHHHHHHHHHH
Q 008424 242 FDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH-PNI-TIIGEEVAAKKQTLKNVTDYIVDIICK 319 (566)
Q Consensus 242 FdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~-pni-vlIpEe~~~~~~tL~~v~~~i~~~I~~ 319 (566)
|+-|++.++.+.+-|. .++. |.+ +.|+..+--..-+-|+++ .++ ++-++ ..+..++.+.-+++...+.+
T Consensus 13 f~~ai~hi~ri~RvL~-----~~~G-h~L-LvG~~GsGr~sl~rLaa~i~~~~~~~i~--~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 13 FDEAIEHIARISRVLS-----QPRG-HAL-LVGVGGSGRQSLARLAAFICGYEVFQIE--ITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp -HHHHHHHHHHHHHHC-----STTE-EEE-EECTTTSCHHHHHHHHHHHTTEEEE-TT--TSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-----CCCC-CeE-EecCCCccHHHHHHHHHHHhccceEEEE--eeCCcCHHHHHHHHHHHHHH
Confidence 6667777776666553 3443 555 667665544444555543 222 22233 23457888888888777766
Q ss_pred HHHcCCCeEEEEEeCC-CCCCchHHHHHHHHHHHHhhhcc
Q 008424 320 RAELGYNYGVILIPEG-LIDFIPEVQQLIAELNEILAHEV 358 (566)
Q Consensus 320 R~~~gk~~gvVlIpEG-l~e~ipe~~~li~el~~~l~~~~ 358 (566)
--.+|+. .+.++.+- +.+ ...++.+|.+++.|.
T Consensus 84 ag~~~~~-~vfll~d~qi~~-----~~fLe~in~LL~sGe 117 (268)
T PF12780_consen 84 AGIKGKP-TVFLLTDSQIVD-----ESFLEDINSLLSSGE 117 (268)
T ss_dssp HHCS-S--EEEEEECCCSSS-----CHHHHHHHHHHHCSS
T ss_pred HhccCCC-eEEEecCcccch-----HhHHHHHHHHHhCCC
Confidence 4444544 45566664 332 246778899988765
No 234
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=24.23 E-value=1.2e+02 Score=33.23 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEc------cChhhhcCCCEEecCcccccchhccCCccccccCC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFR------GGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGR 168 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~------~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR 168 (566)
++|+|+. |-++| +..-+++++.+++.+++-+.+|+- .|.+-|+ +++.+.-+|=+..|+.
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~----------~~~elsvmGf~EVL~~-- 66 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLF----------DMEELSVMGFVEVLGR-- 66 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCcccc----------CHHHHHHhhHHHHHHH--
Confidence 4566654 44444 556688999999999999999886 2222222 2333333432223321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEE
Q 008424 169 DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMG 222 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIG 222 (566)
-++--.-+++.++++.+.+.|.||.|- |..--..+++.+++.+.++++|.
T Consensus 67 -lp~llk~~~~~~~~i~~~kpD~~i~ID---sPdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 67 -LPRLLKIRRELVRYILANKPDVLILID---SPDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCEEEEeC---CCCCchHHHHHHHHhCCCCCeEE
Confidence 111123467778888899999999985 44445667788899998888886
No 235
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.12 E-value=96 Score=31.90 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=29.8
Q ss_pred CEEEEeCCchhHHHHH-HHHHHHhhcCCCceEEEeecc
Q 008424 190 DGLVVIGGDDSNTNAC-LLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 190 d~LviIGGddS~t~A~-~Lae~~~~~~~~i~VIGVPKT 226 (566)
+-+++.||.+.....+ .|++++.++|+++.|++-|.-
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~ 39 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRG 39 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 4688999998877654 899999999999888876553
No 236
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.85 E-value=4.6e+02 Score=25.32 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=51.2
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
||||+..-..|-....+.|+-+.++.. +.++. +..+. .+++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN--GYQML---------------------------------LMNTN---FSIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---CCHHH
Confidence 788988888888888888888876542 22221 11111 12344
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
....++.+...++|++|+.+.+.+.. +.+.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE
Confidence 45666778889999999998764321 223344445 456554
No 237
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=23.74 E-value=1.2e+02 Score=31.94 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=30.9
Q ss_pred HHHHHhhcCCeeEEEEEcCC-CCchHHHHhhhhcCCcEEEe
Q 008424 256 VMIDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITII 295 (566)
Q Consensus 256 i~~Da~S~~k~~~fVevMGR-~ag~LALe~aLqt~pnivlI 295 (566)
.........+.+.||=+||- +.||++|--.-..+.+++++
T Consensus 13 ~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~~~d~vVV 53 (280)
T PF02569_consen 13 WIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARAENDVVVV 53 (280)
T ss_dssp HHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHhCCCEEEE
Confidence 33444556778999999997 89999999888888898887
No 238
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.73 E-value=5.8e+02 Score=24.06 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
++++++++++.+.+- +-++++|-..|...|..++..+...|. .+..++
T Consensus 19 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g~--~~~~~~ 66 (179)
T cd05005 19 DEEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRLMHLGL--NVYVVG 66 (179)
T ss_pred CHHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHHHhCCC--eEEEeC
Confidence 578899999988665 678888877787777777777765554 444443
No 239
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.70 E-value=4.8e+02 Score=22.50 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCch-hhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 96 KIGVVLSGGQAPG-GHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 96 ~IgIv~sGG~aPG-~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
|+.+..++++.|- +-..++++.+. .+.++.-+ +.. .+.+.+.........+++|=|-....+-
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~-----~G~~v~~~-d~~----------~~~~~l~~~~~~~~pd~V~iS~~~~~~~ 65 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK-----AGHEVDIL-DAN----------VPPEELVEALRAERPDVVGISVSMTPNL 65 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH-----TTBEEEEE-ESS----------B-HHHHHHHHHHTTCSEEEEEESSSTHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH-----CCCeEEEE-CCC----------CCHHHHHHHHhcCCCcEEEEEccCcCcH
Confidence 5677777887754 44555555543 36666522 110 0113333222222446777544222244
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHH-HHHHHHhhcCCCceEEE
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNAC-LLAEHFRSKNLKTLVMG 222 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~-~Lae~~~~~~~~i~VIG 222 (566)
+...++++.+++.+=+..+++||-....... .|.++ .+.+.-|+|
T Consensus 66 ~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~---~~~D~vv~G 111 (121)
T PF02310_consen 66 PEAKRLARAIKERNPNIPIVVGGPHATADPEEILREY---PGIDYVVRG 111 (121)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHH---HTSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccC---cCcceecCC
Confidence 5677788888889999999999987433333 34332 355545554
No 240
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=23.39 E-value=1.4e+02 Score=31.53 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=32.2
Q ss_pred HHHHHHHc-----CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 180 ATETAVKL-----DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 180 ~~~~l~~l-----~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
+.|.++++ .+|++|+--|.|+ ++.=++.+|++.+.+++||||..
T Consensus 170 ~~Ei~~q~~~~~~~~d~vv~~vGtGg--t~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 170 ALEIAQQLAEGGVDFDAVVVASGSGG--THAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 34455544 4899988888887 44557778877777899999985
No 241
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.35 E-value=3.6e+02 Score=33.53 Aligned_cols=107 Identities=20% Similarity=0.131 Sum_probs=59.5
Q ss_pred CCCcEEEEEeCCCC----CchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccC
Q 008424 92 DEKLKIGVVLSGGQ----APGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSG 167 (566)
Q Consensus 92 ~~~~~IgIv~sGG~----aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSs 167 (566)
.+.++|.|+-||+. |.=..-.-..+.++|+. .|.+|+.+-.-+.....+. ...+.
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~~d~------~~ad~------------- 63 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIMTDP------APADT------------- 63 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhhcCc------ccCCe-------------
Confidence 45689999999954 44333333455556554 4788888764332222111 00000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE-eCCchhHHHHHHHHH--HHhhcCCCceEEEe
Q 008424 168 RDKIETPEQFKQATETAVKLDLDGLVV-IGGDDSNTNACLLAE--HFRSKNLKTLVMGC 223 (566)
Q Consensus 168 R~k~~~~e~~~~~~~~l~~l~Id~Lvi-IGGddS~t~A~~Lae--~~~~~~~~i~VIGV 223 (566)
.+ + .+-..+.+.+.|++.++|+++. +||......+..|++ .+++.| ++++|.
T Consensus 64 ~y-~-ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~ 118 (1068)
T PRK12815 64 VY-F-EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGT 118 (1068)
T ss_pred eE-E-CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECC
Confidence 00 0 1112456777789999999985 588877777666654 344444 345543
No 242
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.31 E-value=8.6e+02 Score=25.31 Aligned_cols=205 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEeCCCCCc-hhhHHHHHHHHHHHhhCCCCEEEEEcc-------Chhhhc-CCCEEecCcccccchhccC---Ccccccc
Q 008424 99 VVLSGGQAP-GGHNVISGIYDYLQDRAKGSVLYGFRG-------GPAGIM-KCKYVELTSNYIYPYRNQG---GFDMICS 166 (566)
Q Consensus 99 Iv~sGG~aP-G~nnvI~gl~~~l~~~~~~~~v~Gf~~-------G~~GLl-~~~~~eLt~~~v~~~~n~G---G~~~LGS 166 (566)
|.+.||.-| --..-+..+++.+++..+.-.+.++-. --.|+. .+.+..|.+.-++.+...| +++-+..
T Consensus 56 i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~ 135 (309)
T TIGR00423 56 VCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRR 135 (309)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHH
Q ss_pred CC-CCCCCHHHHHHHHHHHHHcC--CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEE--EeeccccCCCCCCC-CCCC-
Q 008424 167 GR-DKIETPEQFKQATETAVKLD--LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVM--GCPKTIDGDLKCKE-VPAS- 239 (566)
Q Consensus 167 sR-~k~~~~e~~~~~~~~l~~l~--Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VI--GVPKTIDNDL~~~~-ie~S- 239 (566)
.- .+-.+.++.-++++.+++++ +..-+++|=..|...-..+...+++.+.++.-+ -||...-. +++. .+..
T Consensus 136 ~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~--~~t~~l~~~~ 213 (309)
T TIGR00423 136 KICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQP--ENNPYLEGEV 213 (309)
T ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecC--CCChhhccCC
Q ss_pred -CChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHH-----HhhhhcCCcE---EEeCCchhhh-------h
Q 008424 240 -FGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITL-----ECALQTHPNI---TIIGEEVAAK-------K 303 (566)
Q Consensus 240 -~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LAL-----e~aLqt~pni---vlIpEe~~~~-------~ 303 (566)
..-+..--.=.-++-.+..+ .-..+ .|||..+ ..+|..++|- ++++|.+... .
T Consensus 214 ~~~~~~~e~lr~iA~~Rl~lp---~~~~i--------~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~ 282 (309)
T TIGR00423 214 RKGASGIDDLKVIAISRILLN---NIRNI--------QASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVG 282 (309)
T ss_pred CCCCCHHHHHHHHHHHHHhcC---CCccc--------eecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCC
Q ss_pred cchHhHHHHHHHH
Q 008424 304 QTLKNVTDYIVDI 316 (566)
Q Consensus 304 ~tL~~v~~~i~~~ 316 (566)
++++++.+.|.++
T Consensus 283 ~~~~~l~~~~~~~ 295 (309)
T TIGR00423 283 LTVEELIEAIKDA 295 (309)
T ss_pred CCHHHHHHHHHHc
No 243
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=23.12 E-value=90 Score=30.24 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHH
Q 008424 182 ETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250 (566)
Q Consensus 182 ~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~s 250 (566)
+.+++++.|++|+-||-++-..+....+.++....+++|.| .|+|+...+..+-
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLG---------------IClG~Q~la~a~G 90 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILG---------------VCLGHQAMAQAFG 90 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEE---------------ECHHHHHHHHHcC
Confidence 33456789999999999988766443333332223567777 4999988776654
No 244
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.12 E-value=2.2e+02 Score=22.35 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
.+..++.+++.+++++.+--=+ ++.+...+.+.+++.|++ .++|+-.++
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~-~~~~~~~~~~~~~~~gi~-~i~G~E~~~ 65 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG-NLFGAVEFYKAAKKAGIK-PIIGLEANI 65 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC-cccCHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 5678889999999999876544 666677777777777764 467776654
No 245
>PHA02728 uncharacterized protein; Provisional
Probab=23.08 E-value=43 Score=30.89 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=12.7
Q ss_pred EeeccccCCCCCCCC
Q 008424 222 GCPKTIDGDLKCKEV 236 (566)
Q Consensus 222 GVPKTIDNDL~~~~i 236 (566)
-||-|+||||+++.-
T Consensus 43 lvpytvdndlpnpnd 57 (184)
T PHA02728 43 LVPYTVDNDLPNPND 57 (184)
T ss_pred ccceeccCCCCCCCc
Confidence 489999999998653
No 246
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=22.90 E-value=1e+02 Score=28.24 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceE
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLV 220 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~V 220 (566)
.+.+.+.++++++|-+++.=-..+......+.+++++.++++.+
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 45667788899999999998888888888899999988876554
No 247
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.83 E-value=2e+02 Score=30.18 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=47.7
Q ss_pred EEecCcccccchh-ccCCc-ccc-ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchh--------HHHHHHHHHHHh
Q 008424 144 YVELTSNYIYPYR-NQGGF-DMI-CSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDS--------NTNACLLAEHFR 212 (566)
Q Consensus 144 ~~eLt~~~v~~~~-n~GG~-~~L-GSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS--------~t~A~~Lae~~~ 212 (566)
..+.|...+..++ .++|. .+. =|||+. +...+...++.+.+++|+.++.++||-. ...+..|-+..+
T Consensus 60 ~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~--n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik 137 (291)
T COG0685 60 TPRRTSVAAAALLKRTGGIEPIPHLTCRDR--NRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIK 137 (291)
T ss_pred CCcccHHHHHHHHHhcCCCccceeecccCC--CHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHH
Confidence 3444444444443 33453 121 167776 6788999999999999999999999984 345677777777
Q ss_pred hcC
Q 008424 213 SKN 215 (566)
Q Consensus 213 ~~~ 215 (566)
+..
T Consensus 138 ~~~ 140 (291)
T COG0685 138 KMR 140 (291)
T ss_pred Hhc
Confidence 554
No 248
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.54 E-value=4.3e+02 Score=25.72 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+.....++.+...++|++++++.+.+.... +.+++++ ++||.+
T Consensus 42 ~~~~~~~~~l~~~~vdgiii~~~~~~~~~~----~~l~~~~--iPvv~~ 84 (268)
T cd06273 42 DREYAQARKLLERGVDGLALIGLDHSPALL----DLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 444566777788899999999876443222 2334444 567765
No 249
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=22.52 E-value=6e+02 Score=25.41 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEEEEeCCCC-CchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 96 KIGVVLSGGQ-APGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 96 ~IgIv~sGG~-aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
||++|..-.+ ..|+..+++.+.+.|.+......++....+....... ...++...+ .+. ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------------~~~~~~~~~--~~~---~~ 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYG-------------GEQEVVRVI--VLD---NP 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCC-------------Ccccceeee--ecC---Cc
Confidence 5788877666 6799999999999987654444444333222111100 000111011 111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHH--HHHHHHHHHhhcCCCceEEEeeccc
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNT--NACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t--~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
..+....+.+++.+.|.+++.-..+... ....+.... +..++++|......
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~h~~ 115 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLL--RGLGIPVVVTLHTV 115 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHH--hhcCCCEEEEEecC
Confidence 3456677788899999887754332221 111221111 23356777766544
No 250
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=3.1e+02 Score=29.08 Aligned_cols=54 Identities=26% Similarity=0.188 Sum_probs=43.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCC--CHHHHHHHHHHHHHHHHHHHcC
Q 008424 399 QVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLP--TNFDATYCYALGYGAGALLHSG 468 (566)
Q Consensus 399 ~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~P--S~fD~~~a~~LG~~Av~li~~g 468 (566)
-|.+|+...|+.+|++.+-.+ .++|.++...| ..||..||+++=.-+-.++...
T Consensus 207 AVvgINIT~m~~qmL~~eal~----------------~~~~~~~~~~~~~~~F~~lYc~af~~~d~~Wl~~~ 262 (302)
T KOG2998|consen 207 AVVGINITFMAIQMLDLEALK----------------KHFNNIVKVFETEPAFDLLYCYAFLEFDKQWLEQR 262 (302)
T ss_pred EEEeecHHHHHHHHHHhhhcc----------------ccccccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999887432 34566666555 5699999999999999998876
No 251
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=22.35 E-value=3.1e+02 Score=28.30 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCeeEEEEEcCCCCchHHHHhhhh-cC---CcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 008424 264 GKYYHFVRLMGRAASHITLECALQ-TH---PNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332 (566)
Q Consensus 264 ~k~~~fVevMGR~ag~LALe~aLq-t~---pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlI 332 (566)
++.+.++|. ..||+...+++- ++ -.++|.|+++.. -.+.|.+.|++|. |++-+||+.
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd~-------sA~~ir~~l~~~~--g~~v~VIIt 148 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPDA-------SAEKIRRGLRELT--GVDVGVIIT 148 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChHH-------HHHHHHHHHHHHH--CCCEEEEEE
Confidence 344567777 788988888875 22 247899999853 3556666666664 788887764
No 252
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=22.06 E-value=77 Score=30.32 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCC
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEV 236 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~i 236 (566)
.++.+++.++.. .+-++||||-.-...+..+++ .+-+--|+.+.+.|..-+.+
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP~~ 131 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFPEI 131 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECSSC
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECCCC
Confidence 366777755555 899999999998887765433 46788899999999876654
No 253
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.97 E-value=9e+02 Score=25.04 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=53.6
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+.++||++...-.-|..+.++.|+.+.+++.. +..+ ++..+..
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~---------------------------------~~~~~~~--- 65 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQL---------------------------------LMNDSQN--- 65 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEE---------------------------------EEecCCC---
Confidence 34789998877677888888888888765421 1111 1111111
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
+.+.-...++.+...++|++++.+.+..... ..+ +.+++.+ ++||.+=
T Consensus 66 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd 113 (330)
T PRK15395 66 DQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFN 113 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEc
Confidence 2233335667788999999999987653332 233 3344445 4566553
No 254
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.94 E-value=4.2e+02 Score=25.89 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=53.9
Q ss_pred EEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHH
Q 008424 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPE 175 (566)
Q Consensus 96 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e 175 (566)
.||||+..-..|-...++.|+-+.+++ .+.++. +..+. .+++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~--~g~~~~---------------------------------~~~~~---~~~~ 42 (273)
T cd06292 1 LVGLLVPELSNPIFPAFAEAIEAALAQ--YGYTVL---------------------------------LCNTY---RGGV 42 (273)
T ss_pred CEEEEeCCCcCchHHHHHHHHHHHHHH--CCCEEE---------------------------------EEeCC---CChH
Confidence 378998888888888899999888754 233322 00000 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCch-hH-HHHHHHHHHHhhcCCCceEEEe
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDD-SN-TNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGdd-S~-t~A~~Lae~~~~~~~~i~VIGV 223 (566)
...+.++.+...++|++++.+..- .. ..+..+ +.+.+++ ++||.+
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i-~~~~~~~--ipvV~i 89 (273)
T cd06292 43 SEADYVEDLLARGVRGVVFISSLHADTHADHSHY-ERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHH-HHHHhCC--CCEEEE
Confidence 456778999999999999998542 22 222233 3344444 566665
No 255
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.86 E-value=4.3e+02 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=9.9
Q ss_pred CCCchHHHHhhhhc
Q 008424 275 RAASHITLECALQT 288 (566)
Q Consensus 275 R~ag~LALe~aLqt 288 (566)
|+.|+-+++.+|+.
T Consensus 82 ~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 82 RSRGVSSLERALER 95 (97)
T ss_pred CCCCHHHHHHHHHh
Confidence 56777777777753
No 256
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=21.83 E-value=2.5e+02 Score=28.06 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCch--hHHHHHHHHHHHhhcCCCceEEEeeccccC
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDD--SNTNACLLAEHFRSKNLKTLVMGCPKTIDG 229 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGdd--S~t~A~~Lae~~~~~~~~i~VIGVPKTIDN 229 (566)
++++++++.+.+.+-|+++ |||.. +..+...+.+..++ ..+++||--|-+.+.
T Consensus 11 e~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccc
Confidence 6677788888999999985 55554 44555556666655 357889988876553
No 257
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=21.74 E-value=8.4e+02 Score=27.13 Aligned_cols=128 Identities=18% Similarity=0.179 Sum_probs=79.6
Q ss_pred hhCCcccCCCeEEEecCCCC------ccCC----CCCcEEEEEeCCCCCchhhH-HHHHHHHHHHhhCCCCEEEEEccCh
Q 008424 68 KLFPNLFGQPSALLVPNGAD------AVRS----DEKLKIGVVLSGGQAPGGHN-VISGIYDYLQDRAKGSVLYGFRGGP 136 (566)
Q Consensus 68 ~~fp~~~~~~~~~~~~~~~~------~~~~----~~~~~IgIv~sGG~aPG~nn-vI~gl~~~l~~~~~~~~v~Gf~~G~ 136 (566)
+.+|-.|.+-++++..+..- .... ...-..-||+.=|.+.|-|. -|++++..+. ..|+++.-|.
T Consensus 87 ~~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~--~~G~r~VVfN--- 161 (409)
T KOG1838|consen 87 SKPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQ--RKGYRVVVFN--- 161 (409)
T ss_pred CCCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHH--hCCcEEEEEC---
Confidence 45666666667766554200 0001 01122334444455555554 4688887754 4567765443
Q ss_pred hhhcCCCEEecCcccccchhccCCccccccCCC-CCCCHHHHHHHHHHHHHcCCCE-EEEeCCchhHHHHHHHHHHHhhc
Q 008424 137 AGIMKCKYVELTSNYIYPYRNQGGFDMICSGRD-KIETPEQFKQATETAVKLDLDG-LVVIGGDDSNTNACLLAEHFRSK 214 (566)
Q Consensus 137 ~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~-k~~~~e~~~~~~~~l~~l~Id~-LviIGGddS~t~A~~Lae~~~~~ 214 (566)
-|..||+ -|.|.|. ..-..+|++.+++.+++.-=++ |+.+| .--+|+.|..|+.+.
T Consensus 162 ------------------~RG~~g~-~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~ 219 (409)
T KOG1838|consen 162 ------------------HRGLGGS-KLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEE 219 (409)
T ss_pred ------------------CCCCCCC-ccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhc
Confidence 2445676 6777774 3456789999999998877777 77776 334678888999888
Q ss_pred CCCceEEE
Q 008424 215 NLKTLVMG 222 (566)
Q Consensus 215 ~~~i~VIG 222 (566)
|-++++++
T Consensus 220 g~~~~l~~ 227 (409)
T KOG1838|consen 220 GDNTPLIA 227 (409)
T ss_pred cCCCCcee
Confidence 88776665
No 258
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.62 E-value=1.9e+02 Score=27.15 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHH-HHHHHHHHHhhcCCCce
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNT-NACLLAEHFRSKNLKTL 219 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t-~A~~Lae~~~~~~~~i~ 219 (566)
+.+++.+.++.+. ..+.++++-||+ -+. ....|.++++++|+++.
T Consensus 47 t~eel~~~I~~~~-~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 47 TPEYLTKTLDKYR-SLISCVLFLGGE-WNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CHHHHHHHHHHhC-CCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEE
Confidence 3444444444433 247899999999 442 35567777777776543
No 259
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=21.43 E-value=1.5e+02 Score=28.30 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHcCCCEEEEeCCchhHHH---HHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHH
Q 008424 185 VKLDLDGLVVIGGDDSNTN---ACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAE 251 (566)
Q Consensus 185 ~~l~Id~LviIGGddS~t~---A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se 251 (566)
...+.|++|+.||.++... ...+.+++.+++ ++|.| .|.|+...+..+.-
T Consensus 36 ~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlG---------------IC~G~Q~l~~~~Gg 88 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFG---------------ICLGHQLLALALGA 88 (178)
T ss_pred hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEE---------------ECHHHHHHHHHcCC
Confidence 4468999999999865433 233344444443 57777 49999888877754
No 260
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=21.26 E-value=1.7e+02 Score=30.09 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCeeEEEEEcCCCCchHHHHhhhh-cCC---cEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 008424 264 GKYYHFVRLMGRAASHITLECALQ-THP---NITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332 (566)
Q Consensus 264 ~k~~~fVevMGR~ag~LALe~aLq-t~p---nivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlI 332 (566)
...+.++|. ..||+...+++- ++. .++|+||+|.. -.+.|.+.|++|. |++-+||+.
T Consensus 89 ~~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd~-------SA~~ir~~l~~~~--g~~v~VIIt 149 (245)
T PRK13293 89 EAPFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPDE-------SAERIREGLEELT--GKKVGVIIT 149 (245)
T ss_pred eCCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHHH-------HHHHHHHHHHHHH--CCCEEEEEE
Confidence 344566676 788998888875 222 48899999953 2566667777664 678787653
No 261
>PLN02327 CTP synthase
Probab=21.07 E-value=1e+02 Score=35.45 Aligned_cols=68 Identities=26% Similarity=0.321 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHH--HHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNT--NACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t--~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I 253 (566)
.+..+-+.+ .+.|++++-||.|+-. .....+++++++ ++++.| .|.|++-++-.++.-+
T Consensus 352 ~y~~~~~~L--~~~DGIvvpGGfG~~~~~G~i~ai~~are~--~iP~LG---------------IClGmQl~viefaRnv 412 (557)
T PLN02327 352 AYAAAWKLL--KGADGILVPGGFGDRGVEGKILAAKYAREN--KVPYLG---------------ICLGMQIAVIEFARSV 412 (557)
T ss_pred hhhhhHHhh--ccCCEEEeCCCCCCcccccHHHHHHHHHHc--CCCEEE---------------EcHHHHHHHHHHHHhh
Confidence 444454444 5679999999975432 233334665554 356777 4999999999999877
Q ss_pred HHHHHHHhhc
Q 008424 254 GNVMIDARST 263 (566)
Q Consensus 254 ~ni~~Da~S~ 263 (566)
-.+. ||.|.
T Consensus 413 lG~~-dAnS~ 421 (557)
T PLN02327 413 LGLK-DANST 421 (557)
T ss_pred cCCc-CCCcc
Confidence 7774 78776
No 262
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.05 E-value=7.2e+02 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEEccChh
Q 008424 112 VISGIYDYLQDRAKGSVLYGFRGGPA 137 (566)
Q Consensus 112 vI~gl~~~l~~~~~~~~v~Gf~~G~~ 137 (566)
++..+...+++.+|+.++.|...||-
T Consensus 60 ~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 60 VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44445556667788888888887764
No 263
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.98 E-value=5.7e+02 Score=25.70 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=49.9
Q ss_pred EEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHH
Q 008424 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQ 176 (566)
Q Consensus 97 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~ 176 (566)
||+|+..-.-|-...++.|+-+.++.... ..++ +.+.++. +.+.
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~-~~~i--------------------------------~~~~~~~---d~~~ 44 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKELGS-VYII--------------------------------YTGPTGT---TAEG 44 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHhCC-eeEE--------------------------------EECCCCC---CHHH
Confidence 57777766778888888888888754310 1110 0111111 2334
Q ss_pred HHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 177 ~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
....++.+...++|++++.+-+.+ .....+ +.+.+.| ++||.+
T Consensus 45 q~~~i~~l~~~~vdgiIi~~~~~~-~~~~~l-~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 45 QIEVVNSLIAQKVDAIAISANDPD-ALVPAL-KKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChH-HHHHHH-HHHHHCC--CEEEEe
Confidence 456788888999999999876422 112223 4444444 567754
No 264
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=20.93 E-value=2.7e+02 Score=23.96 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
+.++...+.+++.+++..++.||+ -+..|.++.++.+.++-|+|-.
T Consensus 49 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~I~~~~~~~~~dllviG~~ 94 (124)
T cd01987 49 RRLAEALRLAEELGAEVVTLPGDD----VAEAIVEFAREHNVTQIVVGKS 94 (124)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCc----HHHHHHHHHHHcCCCEEEeCCC
Confidence 446677778888899888888775 3566778877888888888765
No 265
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=20.87 E-value=95 Score=30.40 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=34.0
Q ss_pred HHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 184 AVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 184 l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
++.++.|++|+-||-++-.......+.+++...+++|.| .|+|+.-.++.+
T Consensus 39 ~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLG---------------IClG~Qlla~~l 89 (195)
T PRK07649 39 IENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFG---------------VCLGHQSIAQVF 89 (195)
T ss_pred HhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEE---------------EcHHHHHHHHHc
Confidence 456789999999999987664333333322223466776 499998877754
No 266
>PRK12342 hypothetical protein; Provisional
Probab=20.80 E-value=2.5e+02 Score=28.93 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCEEEEe-----CCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 180 ATETAVKLDLDGLVVI-----GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 180 ~~~~l~~l~Id~LviI-----GGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
.++.+-.++.|-.|.| +|.|+..+|..|+.++++.++++-+.| =.|+|+|-.
T Consensus 69 l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G-~~s~D~~tg 125 (254)
T PRK12342 69 VRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFG-EGSGDLYAQ 125 (254)
T ss_pred HHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEc-CCcccCCCC
Confidence 4465668899988888 467999999999999998888876776 567777764
No 267
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=20.63 E-value=1.3e+02 Score=28.12 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=25.9
Q ss_pred EEEeCCchh--HHHHHHHHHHHhhcCCCceEEEeec
Q 008424 192 LVVIGGDDS--NTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 192 LviIGGddS--~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
+++.|.||| -|.+..|++++.+.|.++.++.-|.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 577888877 5668899999988887766666564
No 268
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=20.60 E-value=2.8e+02 Score=26.04 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=28.2
Q ss_pred EEEeCCchhHHH--HHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH
Q 008424 192 LVVIGGDDSNTN--ACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC 246 (566)
Q Consensus 192 LviIGGddS~t~--A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~ 246 (566)
+.++|-.||=++ +..|...++++|+++.+| .+|....+++ ..|.||..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi------K~~~~~~~~d-~~~~D~~~ 51 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI------KHDHHDFDID-KNGKDSYR 51 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------ecccccccCC-CccccHHH
Confidence 467776666444 578888888888765554 3443332322 34666654
No 269
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=20.53 E-value=1.9e+02 Score=29.60 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=44.3
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
...||+++..-..|-...++.|+-+.++. .+..++ +.++. .+
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~--~gy~~~---------------------------------i~~~~---~~ 101 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCRE--AGYQLL---------------------------------IACSD---DN 101 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHH--CCCEEE---------------------------------EEeCC---CC
Confidence 36899999776677777788888877643 233322 11110 12
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCch
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDD 199 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGdd 199 (566)
++...+.++.+...++||+|+.+.+.
T Consensus 102 ~~~~~~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 102 PDQEKVVIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33445677888899999999988654
No 270
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=20.51 E-value=2.2e+02 Score=29.35 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=34.5
Q ss_pred HHHHHHHHHcC--CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 178 KQATETAVKLD--LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 178 ~~~~~~l~~l~--Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
.-+.|.+++++ +|++|+--|.|+...+ ++.+|++.+..++||||=.
T Consensus 148 t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~G--i~~~~~~~~~~~~vi~Ve~ 195 (291)
T cd01561 148 TTAPEIWEQLDGKVDAFVAGVGTGGTITG--VARYLKEKNPNVRIVGVDP 195 (291)
T ss_pred HHHHHHHHHcCCCCCEEEEeCChHHHHHH--HHHHHHHhCCCCEEEEEec
Confidence 34577788775 8999998888885544 5667777777789999854
No 271
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.47 E-value=1e+02 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 202 TNACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 202 t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
..+..|.+..++.....-|||.|++.|+-.
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~~ 69 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGTE 69 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEecCcCCCCCc
Confidence 356667777777788899999999888754
No 272
>PRK10717 cysteine synthase A; Provisional
Probab=20.33 E-value=2.1e+02 Score=30.17 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHHcC--CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 178 KQATETAVKLD--LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 178 ~~~~~~l~~l~--Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
.-+.|.+++++ +|++|+--|.|++... ++.+|++.+-+++||+|-..
T Consensus 164 t~a~Ei~~ql~~~~d~iv~~vG~GG~~~G--i~~~~k~~~~~~~vi~Vep~ 212 (330)
T PRK10717 164 TTGPEIWEQTDGKVDGFVCAVGTGGTLAG--VSRYLKETNPKVKIVLADPT 212 (330)
T ss_pred hHHHHHHHhcCCCCCEEEEecCchHHHHH--HHHHHHHhCCCCEEEEEcCC
Confidence 44677778775 8999888777775443 56677776667899998764
No 273
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=20.28 E-value=3.4e+02 Score=28.21 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=52.1
Q ss_pred EEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHHH
Q 008424 99 VVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFK 178 (566)
Q Consensus 99 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~ 178 (566)
||.+|=-=||+.|.+.-+.+. .. .+++++++ ||.++|.+ ++.++
T Consensus 169 vvItGCsH~GI~niv~~~~~~----~g-~rv~~ViG-------------------------GFHL~~~~------~~~l~ 212 (259)
T COG1237 169 VVITGCSHPGIVNIVEWAKER----SG-DRVKAVIG-------------------------GFHLIGAS------EERLE 212 (259)
T ss_pred EEEEcCCcccHHHHHHHHHHh----cc-ceeEEEee-------------------------eeccCCCc------HHHHH
Confidence 677777788888887765543 34 78998884 55566543 35678
Q ss_pred HHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHh
Q 008424 179 QATETAVKLDLDGLVVIGGDDSNTNACLLAEHFR 212 (566)
Q Consensus 179 ~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~ 212 (566)
++++.+++++++-++-. =--.....+.|++.|.
T Consensus 213 ~~~~~l~el~v~~i~pc-HCTg~~a~~~l~~~~~ 245 (259)
T COG1237 213 EVADYLKELGVEKIYPC-HCTGEKAKRYLRRVFG 245 (259)
T ss_pred HHHHHHHhcCCCeEEec-CCCCHHHHHHHHHHcC
Confidence 89999999999876543 3333455556666543
No 274
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.04 E-value=3.7e+02 Score=28.07 Aligned_cols=111 Identities=12% Similarity=0.017 Sum_probs=52.4
Q ss_pred ChhHHHhhCCcccCCCeEEEecCCCCccCCCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcC
Q 008424 62 NPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK 141 (566)
Q Consensus 62 ~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~ 141 (566)
+.+++++.|..+...--+.+.-. ...+++||+|+.||+ -.- ..+++++.+...-+.+|.+++-
T Consensus 62 ~~~~L~~~L~~l~~~l~l~i~l~-----~~~~~~ri~vl~Sg~-gsn----l~al~~~~~~~~~~~~i~~vis------- 124 (286)
T PRK06027 62 NLETLRADFAALAEEFEMDWRLL-----DSAERKRVVILVSKE-DHC----LGDLLWRWRSGELPVEIAAVIS------- 124 (286)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEc-----ccccCcEEEEEEcCC-CCC----HHHHHHHHHcCCCCcEEEEEEE-------
Confidence 36677776665554422222211 124668999999999 222 3445554433222345544431
Q ss_pred CCEEecCcccccchhccCCccccccCCCCCCCHHHH-HHHHHHHHHcCCCEEEEeC
Q 008424 142 CKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQF-KQATETAVKLDLDGLVVIG 196 (566)
Q Consensus 142 ~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~-~~~~~~l~~l~Id~LviIG 196 (566)
++ ..+..+...=|-...--.+.+ .+.+++ .++.+.+++++.|.+|+.|
T Consensus 125 n~------~~~~~lA~~~gIp~~~~~~~~-~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 125 NH------DDLRSLVERFGIPFHHVPVTK-ETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred cC------hhHHHHHHHhCCCEEEeccCc-cccchhHHHHHHHHHHhCCCEEEEec
Confidence 11 122222222222121111111 122233 3567888899998666554
Done!