Query 008424
Match_columns 566
No_of_seqs 253 out of 1374
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f48_A Diphosphate--fructose-6 100.0 7E-140 2E-144 1153.7 47.7 537 26-563 2-554 (555)
2 3hno_A Pyrophosphate-dependent 100.0 1.2E-83 4.1E-88 688.1 34.6 342 94-502 3-362 (419)
3 1pfk_A Phosphofructokinase; tr 100.0 1.3E-79 4.4E-84 636.6 35.4 300 94-498 2-303 (320)
4 1zxx_A 6-phosphofructokinase; 100.0 8.3E-80 2.8E-84 637.8 33.7 301 95-500 2-303 (319)
5 2hig_A 6-phospho-1-fructokinas 100.0 1.4E-79 4.7E-84 663.8 35.0 335 92-499 95-433 (487)
6 4a3s_A 6-phosphofructokinase; 100.0 1E-76 3.5E-81 615.9 32.1 302 94-500 1-303 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 1.3E-72 4.5E-77 636.6 29.4 342 92-524 13-380 (762)
8 3o8o_B 6-phosphofructokinase s 100.0 3.2E-71 1.1E-75 625.6 36.1 343 94-526 3-372 (766)
9 3o8o_A 6-phosphofructokinase s 100.0 5.8E-71 2E-75 623.4 33.9 344 93-527 4-373 (787)
10 3o8l_A 6-phosphofructokinase, 100.0 4.3E-71 1.5E-75 624.3 32.3 327 92-510 398-743 (762)
11 3opy_B 6-phosphofructo-1-kinas 100.0 1.7E-70 5.7E-75 626.0 32.0 345 92-526 179-550 (941)
12 3opy_A 6-phosphofructo-1-kinas 100.0 4E-70 1.4E-74 621.1 33.4 346 92-528 208-579 (989)
13 3o8o_A 6-phosphofructokinase s 100.0 3.1E-69 1.1E-73 609.3 32.6 339 92-521 391-773 (787)
14 3o8o_B 6-phosphofructokinase s 100.0 4.3E-68 1.5E-72 600.1 32.4 329 92-511 391-751 (766)
15 3opy_B 6-phosphofructo-1-kinas 100.0 3.2E-68 1.1E-72 607.2 31.4 328 92-510 569-926 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 4.3E-67 1.5E-71 596.2 29.5 328 92-511 596-972 (989)
17 2i2c_A Probable inorganic poly 85.6 0.65 2.2E-05 46.3 4.6 46 177-225 17-69 (272)
18 3m9w_A D-xylose-binding peripl 83.5 26 0.00089 33.9 15.2 105 94-244 2-106 (313)
19 1oj7_A Hypothetical oxidoreduc 76.2 3.7 0.00013 43.1 6.5 55 173-227 91-161 (408)
20 1jq5_A Glycerol dehydrogenase; 75.8 6.2 0.00021 40.7 8.0 48 174-226 72-119 (370)
21 3g1w_A Sugar ABC transporter; 75.2 59 0.002 31.1 17.2 106 94-244 4-109 (305)
22 3uhj_A Probable glycerol dehyd 73.8 6.4 0.00022 41.2 7.5 49 173-226 91-139 (387)
23 3iv7_A Alcohol dehydrogenase I 72.5 6.1 0.00021 41.0 7.0 52 173-230 73-124 (364)
24 1z0s_A Probable inorganic poly 71.7 2.3 7.8E-05 42.9 3.3 53 188-258 68-122 (278)
25 2bon_A Lipid kinase; DAG kinas 70.8 6.3 0.00021 40.1 6.5 46 186-232 80-125 (332)
26 3ox4_A Alcohol dehydrogenase 2 70.7 8.3 0.00029 40.1 7.5 58 173-230 73-143 (383)
27 1u0t_A Inorganic polyphosphate 70.2 3.1 0.00011 42.0 4.1 34 187-225 74-107 (307)
28 3jzd_A Iron-containing alcohol 70.0 7 0.00024 40.5 6.7 50 173-227 74-123 (358)
29 3hl0_A Maleylacetate reductase 69.6 9 0.00031 39.5 7.4 50 173-227 72-121 (353)
30 1rrm_A Lactaldehyde reductase; 69.4 8.5 0.00029 39.9 7.3 56 173-228 73-143 (386)
31 3l6u_A ABC-type sugar transpor 68.3 31 0.0011 32.8 10.7 107 92-244 6-112 (293)
32 2an1_A Putative kinase; struct 66.8 7.3 0.00025 38.7 5.9 90 94-224 5-94 (292)
33 3rot_A ABC sugar transporter, 66.3 93 0.0032 29.7 15.2 89 94-224 3-93 (297)
34 3bfj_A 1,3-propanediol oxidore 64.9 14 0.00048 38.3 7.8 55 173-227 77-144 (387)
35 3clh_A 3-dehydroquinate syntha 64.8 10 0.00035 38.9 6.6 52 173-227 67-121 (343)
36 3tb6_A Arabinose metabolism tr 64.7 34 0.0012 32.4 10.2 105 95-244 16-121 (298)
37 3pfn_A NAD kinase; structural 64.1 3.9 0.00013 42.8 3.3 120 93-257 37-162 (365)
38 3egc_A Putative ribose operon 63.9 18 0.0006 34.7 7.9 104 92-244 6-109 (291)
39 1xah_A Sadhqs, 3-dehydroquinat 63.7 9.9 0.00034 39.0 6.3 52 173-227 72-126 (354)
40 1o2d_A Alcohol dehydrogenase, 63.1 8.5 0.00029 39.8 5.7 58 173-230 83-153 (371)
41 3rf7_A Iron-containing alcohol 62.8 12 0.00041 39.0 6.8 56 173-228 91-162 (375)
42 1yt5_A Inorganic polyphosphate 62.4 3 0.0001 41.0 2.1 32 187-224 40-71 (258)
43 3d8u_A PURR transcriptional re 62.1 44 0.0015 31.3 10.3 102 94-244 3-104 (275)
44 1vlj_A NADH-dependent butanol 62.1 14 0.00047 38.7 7.2 55 173-227 86-153 (407)
45 3gbv_A Putative LACI-family tr 62.0 91 0.0031 29.5 12.7 111 92-244 6-117 (304)
46 3afo_A NADH kinase POS5; alpha 61.5 3.4 0.00012 43.5 2.3 36 94-130 41-76 (388)
47 2qv7_A Diacylglycerol kinase D 60.2 7.6 0.00026 39.4 4.6 45 185-232 77-121 (337)
48 3ce9_A Glycerol dehydrogenase; 60.0 7.9 0.00027 39.6 4.8 52 173-230 74-125 (354)
49 3jy6_A Transcriptional regulat 59.8 72 0.0025 30.1 11.4 102 92-243 5-106 (276)
50 3o74_A Fructose transport syst 59.4 28 0.00095 32.7 8.3 103 94-244 2-104 (272)
51 1sg6_A Pentafunctional AROM po 59.3 15 0.00052 38.3 6.8 52 173-227 85-141 (393)
52 3gv0_A Transcriptional regulat 59.0 35 0.0012 32.6 9.1 104 92-244 6-111 (288)
53 3l8m_A Probable thiamine pyrop 57.7 20 0.0007 34.2 6.9 90 125-218 21-125 (212)
54 3k4h_A Putative transcriptiona 57.0 1.2E+02 0.0041 28.5 12.5 105 92-244 6-115 (292)
55 3l49_A ABC sugar (ribose) tran 56.7 57 0.002 30.8 10.1 104 93-244 4-107 (291)
56 1ujn_A Dehydroquinate synthase 54.2 18 0.00061 37.1 6.3 52 173-227 66-120 (348)
57 3okf_A 3-dehydroquinate syntha 54.0 18 0.00063 37.9 6.4 52 173-227 105-159 (390)
58 3ksm_A ABC-type sugar transpor 53.0 1.4E+02 0.0049 27.6 13.6 106 95-244 1-107 (276)
59 1meo_A Phosophoribosylglycinam 52.6 44 0.0015 31.8 8.4 93 95-207 1-97 (209)
60 3dbi_A Sugar-binding transcrip 52.3 63 0.0021 31.7 9.8 103 93-243 60-164 (338)
61 1kq3_A Glycerol dehydrogenase; 52.1 13 0.00044 38.4 4.9 48 173-226 80-127 (376)
62 3qbe_A 3-dehydroquinate syntha 51.2 23 0.0008 36.8 6.6 52 173-227 85-139 (368)
63 1ta9_A Glycerol dehydrogenase; 50.8 15 0.0005 39.3 5.1 47 174-226 132-178 (450)
64 3e61_A Putative transcriptiona 50.2 87 0.003 29.3 10.2 99 93-244 7-106 (277)
65 3kjx_A Transcriptional regulat 49.6 1E+02 0.0034 30.3 10.9 87 93-223 67-153 (344)
66 3s40_A Diacylglycerol kinase; 49.0 13 0.00045 37.1 4.2 42 188-232 63-104 (304)
67 2gru_A 2-deoxy-scyllo-inosose 47.2 27 0.00092 36.0 6.3 52 173-227 76-130 (368)
68 8abp_A L-arabinose-binding pro 47.0 1.3E+02 0.0044 28.6 10.9 87 94-223 2-88 (306)
69 3av3_A Phosphoribosylglycinami 45.3 56 0.0019 31.1 7.8 98 94-208 3-101 (212)
70 3c3k_A Alanine racemase; struc 43.5 1.2E+02 0.0042 28.6 10.1 102 93-244 7-108 (285)
71 3brq_A HTH-type transcriptiona 42.6 2.2E+02 0.0074 26.6 12.2 88 93-224 18-108 (296)
72 1iv0_A Hypothetical protein; r 42.4 20 0.00069 30.2 3.7 32 201-232 37-68 (98)
73 3p9x_A Phosphoribosylglycinami 42.1 91 0.0031 29.8 8.7 99 94-209 2-101 (211)
74 3o1l_A Formyltetrahydrofolate 40.0 1.4E+02 0.0049 30.0 10.2 120 62-207 78-199 (302)
75 2kwv_A RAD30 homolog B, DNA po 39.5 11 0.00037 27.8 1.3 18 374-391 18-35 (48)
76 1jkx_A GART;, phosphoribosylgl 38.8 98 0.0034 29.4 8.4 97 95-208 1-98 (212)
77 2rgy_A Transcriptional regulat 38.4 2E+02 0.0068 27.2 10.8 103 93-244 7-112 (290)
78 3auf_A Glycinamide ribonucleot 38.4 1.2E+02 0.004 29.3 8.9 100 92-208 20-120 (229)
79 3nxk_A Cytoplasmic L-asparagin 38.3 2.3E+02 0.0078 28.9 11.6 49 173-223 70-121 (334)
80 3lm8_A Thiamine pyrophosphokin 37.8 38 0.0013 32.6 5.3 91 127-221 26-130 (222)
81 3o1i_D Periplasmic protein TOR 36.4 1.4E+02 0.0046 28.3 9.2 72 93-200 4-75 (304)
82 3gyb_A Transcriptional regulat 36.3 1.6E+02 0.0056 27.4 9.6 116 93-217 4-148 (280)
83 3s4y_A Thiamin pyrophosphokina 35.5 87 0.003 30.6 7.6 112 95-219 21-158 (247)
84 8abp_A L-arabinose-binding pro 35.4 2E+02 0.0067 27.2 10.2 47 175-223 181-231 (306)
85 3brs_A Periplasmic binding pro 34.1 2.7E+02 0.0094 25.9 10.9 108 93-244 4-113 (289)
86 2yxb_A Coenzyme B12-dependent 33.7 56 0.0019 29.6 5.5 91 93-200 17-110 (161)
87 4ds3_A Phosphoribosylglycinami 33.3 1.2E+02 0.0041 28.8 8.0 86 92-196 5-94 (209)
88 3mel_A Thiamin pyrophosphokina 32.3 16 0.00056 35.2 1.7 110 98-219 4-129 (222)
89 1agx_A Glutaminase-asparaginas 32.1 73 0.0025 32.5 6.6 49 173-223 63-115 (331)
90 4pga_A Glutaminase-asparaginas 32.0 79 0.0027 32.4 6.9 49 173-223 71-123 (337)
91 3hs3_A Ribose operon repressor 31.6 88 0.003 29.6 6.9 67 92-196 8-75 (277)
92 3fst_A 5,10-methylenetetrahydr 31.5 49 0.0017 33.4 5.2 104 113-224 41-153 (304)
93 2vk2_A YTFQ, ABC transporter p 31.2 3.5E+02 0.012 25.6 11.7 88 94-223 2-89 (306)
94 3k94_A Thiamin pyrophosphokina 30.9 56 0.0019 31.5 5.3 90 126-221 24-127 (223)
95 3e3m_A Transcriptional regulat 30.9 57 0.0019 32.4 5.5 87 93-223 69-155 (355)
96 3apt_A Methylenetetrahydrofola 30.7 39 0.0013 34.2 4.3 102 114-224 32-150 (310)
97 2dri_A D-ribose-binding protei 30.7 1.6E+02 0.0054 27.6 8.5 104 95-244 2-105 (271)
98 1jak_A Beta-N-acetylhexosamini 30.3 2.4E+02 0.0082 30.4 10.7 112 154-272 156-321 (512)
99 3h5o_A Transcriptional regulat 30.0 2.8E+02 0.0096 26.9 10.5 87 93-223 61-147 (339)
100 3lkv_A Uncharacterized conserv 29.9 1.8E+02 0.0062 28.3 9.0 73 92-197 6-78 (302)
101 1o7j_A L-asparaginase; atomic 29.3 79 0.0027 32.2 6.3 49 173-223 66-118 (327)
102 3uug_A Multiple sugar-binding 28.0 4E+02 0.014 25.4 19.2 104 94-243 3-107 (330)
103 2wlt_A L-asparaginase; hydrola 27.8 80 0.0027 32.2 6.0 49 173-223 66-118 (332)
104 3clk_A Transcription regulator 27.5 2.9E+02 0.0099 25.9 9.8 90 93-225 7-96 (290)
105 1nu0_A Hypothetical protein YQ 27.3 41 0.0014 30.1 3.3 28 204-231 42-69 (138)
106 4b4t_W RPN10, 26S proteasome r 26.9 1.6E+02 0.0054 29.2 7.8 51 175-225 89-146 (268)
107 2rjo_A Twin-arginine transloca 26.6 4.3E+02 0.015 25.3 12.0 91 93-225 4-96 (332)
108 2pn1_A Carbamoylphosphate synt 26.2 4.5E+02 0.015 25.3 12.8 42 173-215 57-98 (331)
109 1wsa_A Asparaginase, asparagin 25.0 81 0.0028 32.2 5.5 49 173-223 64-116 (330)
110 4fle_A Esterase; structural ge 25.0 79 0.0027 28.0 4.9 80 191-292 4-87 (202)
111 2nrr_A Uvrabc system protein C 25.0 75 0.0026 29.3 4.7 93 169-265 53-153 (159)
112 3d02_A Putative LACI-type tran 24.9 4.3E+02 0.015 24.7 11.5 89 94-223 4-92 (303)
113 3dnf_A ISPH, LYTB, 4-hydroxy-3 24.6 69 0.0024 32.4 4.7 54 175-230 197-250 (297)
114 2him_A L-asparaginase 1; hydro 24.5 95 0.0032 32.1 5.9 50 173-223 84-135 (358)
115 1qpz_A PURA, protein (purine n 24.4 1.8E+02 0.0063 28.3 7.9 69 94-200 58-126 (340)
116 1tjy_A Sugar transport protein 24.3 2.4E+02 0.0083 27.1 8.8 89 95-224 4-92 (316)
117 3hut_A Putative branched-chain 24.3 3.6E+02 0.012 26.0 10.1 136 92-270 2-145 (358)
118 3szu_A ISPH, 4-hydroxy-3-methy 24.3 94 0.0032 31.9 5.7 45 175-221 213-257 (328)
119 2ywr_A Phosphoribosylglycinami 24.3 2.1E+02 0.0072 27.1 8.0 96 95-207 2-98 (216)
120 3qk7_A Transcriptional regulat 24.1 49 0.0017 31.8 3.5 102 93-244 5-110 (294)
121 2d6f_A Glutamyl-tRNA(Gln) amid 23.7 1.2E+02 0.004 32.4 6.5 50 173-224 149-201 (435)
122 1i60_A IOLI protein; beta barr 23.5 4.4E+02 0.015 24.3 13.4 50 176-225 15-69 (278)
123 3lp6_A Phosphoribosylaminoimid 23.4 75 0.0026 29.7 4.4 48 173-226 47-94 (174)
124 3h3e_A Uncharacterized protein 23.2 1.7E+02 0.0057 28.8 7.2 76 99-211 175-250 (267)
125 1vdr_A DHFR, dihydrofolate red 22.9 49 0.0017 29.8 3.0 50 176-232 81-130 (162)
126 2g0t_A Conserved hypothetical 22.8 3.3E+02 0.011 27.9 9.6 105 185-295 165-279 (350)
127 3q12_A Pantoate--beta-alanine 22.5 1.6E+02 0.0054 29.7 6.9 39 258-296 18-57 (287)
128 3sho_A Transcriptional regulat 21.9 2.3E+02 0.0078 25.2 7.4 48 173-224 25-72 (187)
129 2hsg_A Glucose-resistance amyl 21.8 1.4E+02 0.0048 28.9 6.4 103 93-244 59-161 (332)
130 1vp8_A Hypothetical protein AF 21.7 1.4E+02 0.0046 28.6 5.8 47 172-224 27-73 (201)
131 3trh_A Phosphoribosylaminoimid 21.6 70 0.0024 29.8 3.7 48 173-226 46-93 (169)
132 3k8d_A 3-deoxy-manno-octuloson 21.4 5.2E+02 0.018 24.9 10.4 115 95-225 18-146 (264)
133 3tqr_A Phosphoribosylglycinami 20.9 2.9E+02 0.0098 26.3 8.1 95 93-208 4-102 (215)
134 2qip_A Protein of unknown func 20.9 48 0.0016 30.0 2.5 50 176-228 95-146 (165)
135 1wls_A L-asparaginase; structu 20.8 1.1E+02 0.0036 31.3 5.3 51 173-224 56-108 (328)
136 3obi_A Formyltetrahydrofolate 20.8 3.8E+02 0.013 26.6 9.3 121 62-208 62-185 (288)
137 3oow_A Phosphoribosylaminoimid 20.7 99 0.0034 28.7 4.5 47 173-226 45-92 (166)
138 2q02_A Putative cytoplasmic pr 20.6 1.3E+02 0.0045 28.2 5.8 42 175-216 85-134 (272)
139 1zq1_A Glutamyl-tRNA(Gln) amid 20.5 1.3E+02 0.0044 32.0 6.1 51 173-224 150-203 (438)
140 2i4r_A V-type ATP synthase sub 20.2 78 0.0027 26.8 3.5 31 311-342 39-69 (102)
No 1
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=7e-140 Score=1153.74 Aligned_cols=537 Identities=47% Similarity=0.822 Sum_probs=512.6
Q ss_pred CCCHhhhhhhcCCCCCcccccCC---ceeecCCCCCCCCChhHHHhhCCcccCCCeEEEecCCCCccCCCCCcEEEEEeC
Q 008424 26 VYSELQTSRIDHALPLPSVLKNP---FKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLS 102 (566)
Q Consensus 26 ~~s~~~~~r~~~~p~lp~~l~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~s 102 (566)
++|+||++|+.|+|+||++|++. +++++++++.++.++++|+++|||||++|+++|++++.. .....++||||++|
T Consensus 2 ~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~-~~~~~~~~igIlts 80 (555)
T 2f48_A 2 NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESS-LSFSKALNIGIILS 80 (555)
T ss_dssp --CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCC-CSCCSCCEEEEEEB
T ss_pred CCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCccCHHHHHHhCccccCCCcEEEecCCcc-cccCCCcEEEEECc
Confidence 68999999999999999999986 789999999999999999999999999999999987421 24567799999999
Q ss_pred CCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHHHHHHH
Q 008424 103 GGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATE 182 (566)
Q Consensus 103 GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~ 182 (566)
|||||||||||+|+++++++.+++++||||++||+||+++++++|+++.++.|+++|||++|||+|+++.++++++++++
T Consensus 81 GGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~ 160 (555)
T 2f48_A 81 GGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALF 160 (555)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999999999996599999999988999999999
Q ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 008424 183 TAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARS 262 (566)
Q Consensus 183 ~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S 262 (566)
+|++++||+||+||||||+++|+.|++++++++++++||||||||||||+++.||+|||||||+++++++|++|++||.|
T Consensus 161 ~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s 240 (555)
T 2f48_A 161 VAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMS 240 (555)
T ss_dssp HHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchH
Q 008424 263 TGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPE 342 (566)
Q Consensus 263 ~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe 342 (566)
++++|||||||||+||||||+||||++||+|||||++++++++|++++++||+.|++|+.+||+|+||+||||+++++|+
T Consensus 241 ~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~ 320 (555)
T 2f48_A 241 TKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPE 320 (555)
T ss_dssp HCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHH
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc-------ccccCc-hhhhcchhhHHHhhhchHHHHHHHh---hccCCCCCcccchhhhHHHHHH
Q 008424 343 VQQLIAELNEILAHEV-------VDEGGQ-WKKKLTKQSLQLFEFLPQAIQEQLM---LERDPHGNVQVAKIETEKMLIQ 411 (566)
Q Consensus 343 ~~~li~el~~~l~~~~-------~~~~g~-~~~~ls~~~~~lf~~lp~~i~~ql~---~~rD~~G~~~ls~i~te~lL~~ 411 (566)
++.|++|+|++++++. .+++|. +..+||+|++++|.++|.+|++||+ .++|+|||+++++|+||++|++
T Consensus 321 ~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~ 400 (555)
T 2f48_A 321 VKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIE 400 (555)
T ss_dssp HHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHH
Confidence 9999999999987642 123344 5578999999999999999999997 7899999999999999999999
Q ss_pred HHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEecc
Q 008424 412 MVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGT 491 (566)
Q Consensus 412 lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~v 491 (566)
+|+++|++++.++.|+++|++|+|+|||+||||.||+|||.||++||+.|++++++|.||+|++++|++.++|+|++.++
T Consensus 401 ~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~v 480 (555)
T 2f48_A 401 MIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGV 480 (555)
T ss_dssp HHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEE
T ss_pred HHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEee
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhHHHhcCCCcceeeecccccCChhhHHHHHhhhcccccCcccCCccccccCCCC--CCCcceeeeccC
Q 008424 492 ALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTS--GDVNHTLLLELG 563 (566)
Q Consensus 492 Pl~~~~~~e~~~g~~~p~i~~~~V~l~g~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~~ 563 (566)
||++|||+|+++|+.+|+|+|++|||+|++|+.|+++|++|+++|+||+||||||+||++ |++++||.||+.
T Consensus 481 Pl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~ 554 (555)
T 2f48_A 481 PLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITETLKLELF 554 (555)
T ss_dssp EGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCCCHHHHHHTC
T ss_pred eHHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHHHHHHhhhcCcccCCCCEeecCccccccCCCceeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999974
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.2e-83 Score=688.08 Aligned_cols=342 Identities=19% Similarity=0.270 Sum_probs=295.0
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCC-CCEEEEEccChhhhcCCCEEecCcc---cccchhccCCccccccCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAK-GSVLYGFRGGPAGIMKCKYVELTSN---YIYPYRNQGGFDMICSGRD 169 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~-~~~v~Gf~~G~~GLl~~~~~eLt~~---~v~~~~n~GG~~~LGSsR~ 169 (566)
.+||||++||||||||||||+|+++.+..... ..+||||++||+||+++++++|+.. +++.++++||+ +|||||+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGt-iLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSG-AFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSC-TTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCc-eecCCCC
Confidence 47999999999999999999999999865432 3399999999999999999999765 78999999998 9999999
Q ss_pred CC----CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHH
Q 008424 170 KI----ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTA 245 (566)
Q Consensus 170 k~----~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA 245 (566)
++ .+++++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||.+|| +|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD--~t~GFdTA 159 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITD--CCPGFGSV 159 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSS--SCTTHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCC--CCCCchHH
Confidence 87 5889999999999999999999999999999999999999999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC---eeEEEEEcCCCCchHHHHhhhh-----cCCcEEEeCCchhhhhcchHhHHHHHHHHH
Q 008424 246 CKIYAEMIGNVMIDARSTGK---YYHFVRLMGRAASHITLECALQ-----THPNITIIGEEVAAKKQTLKNVTDYIVDII 317 (566)
Q Consensus 246 ~k~~se~I~ni~~Da~S~~k---~~~fVevMGR~ag~LALe~aLq-----t~pnivlIpEe~~~~~~tL~~v~~~i~~~I 317 (566)
+++++++|+++.+|+.|+++ +|||||||||+||||||+|||| ++||+|||||++++ + +.+++.|
T Consensus 160 ~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~----~----~~~~~~i 231 (419)
T 3hno_A 160 AKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFD----K----QKFLAKV 231 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCC----H----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCC----H----HHHHHHH
Confidence 99999999999999888776 7999999999999999999999 79999999999874 2 5566777
Q ss_pred HHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCC
Q 008424 318 CKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGN 397 (566)
Q Consensus 318 ~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~ 397 (566)
++|.++ ++|+||+|+||+.+ .+|+++. ++ ..+|+|||
T Consensus 232 ~~~~~~-~~~~iIvVaEG~~~----------------------~~g~~i~------------------~~--~~~D~~G~ 268 (419)
T 3hno_A 232 DSCVKK-FGYCSVVVSEGVKG----------------------DDGKFLS------------------DQ--GVRDAFGH 268 (419)
T ss_dssp HHHHHH-HSCEEEEEETTCCC----------------------SSSCC--------------------------------
T ss_pred HHHHHh-CCCEEEEEeCCCcc----------------------cCCcchh------------------cc--cccccccC
Confidence 777766 67999999999875 2232221 11 25799999
Q ss_pred cccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEE
Q 008424 398 VQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGL--PTNFDATYCYALGYGAGALLHSGKTGLISS 475 (566)
Q Consensus 398 ~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~--PS~fD~~~a~~LG~~Av~li~~g~tG~mv~ 475 (566)
++++++ +++|+++|++++. +++|.++|||+||||. ||+||+.||++||..|++++++|.+|+|++
T Consensus 269 ~~l~gi--~~~la~~i~~~~g-----------~~~R~~~lGh~QRgg~p~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~ 335 (419)
T 3hno_A 269 AQLGGV--APVVASMVKEGLG-----------LKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPT 335 (419)
T ss_dssp ---CCS--HHHHHHHHHHHHC-----------CCEEEEECTHHHHSCGGGCBHHHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cccCcH--HHHHHHHHHHHhC-----------CceEEcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999998 7788888888763 5788999999999999 899999999999999999999999999999
Q ss_pred ecCCCCCccceEEeccchHHHHhHHHh
Q 008424 476 VGNLAAPVEEWTVSGTALTALMDVERR 502 (566)
Q Consensus 476 i~nl~~~~~~w~~~~vPl~~~~~~e~~ 502 (566)
+++.+.++|+|++..+||.++++.+|+
T Consensus 336 ~~~~~~~~y~~~~~~vpl~~~~~~~k~ 362 (419)
T 3hno_A 336 IERISARPYQWKVGMAQLSQVANVEKM 362 (419)
T ss_dssp EEEEEC-CCEEEEEEEEHHHHSSCCCC
T ss_pred EECCCCCccccEEEEeeHHHHhcccCC
Confidence 999999999999999999999986654
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=1.3e-79 Score=636.64 Aligned_cols=300 Identities=27% Similarity=0.338 Sum_probs=273.9
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IE 172 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~ 172 (566)
.+||||++|||||||||++|+++++++. +++++||||++||+||+++++++|++++++.|+++||+ +|||+|++ ++
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~ 78 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSAL--TEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGT-FLGSARFPEFR 78 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH--HTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSC-TTCCCCCGGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCC-eeccCCCCCCC
Confidence 3799999999999999999999999965 46789999999999999999999999999999999997 99999998 56
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEM 252 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~ 252 (566)
+++++++++++|++++||+||+||||||+++|++|+|+ +++||||||||||||+++| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~a 150 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEA 150 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCc--CCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999985 6899999999999999988 899999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 008424 253 IGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332 (566)
Q Consensus 253 I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlI 332 (566)
|++++.+|.|++ +|||||||||+||||||+||||++||+|||||+++ ++ +++++.|++|+++||+|++|++
T Consensus 151 id~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~~----~~i~~~i~~~~~~gk~~~iIvv 221 (320)
T 1pfk_A 151 IDRLRDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEF----SR----EDLVNEIKAGIAKGKKHAIVAI 221 (320)
T ss_dssp HHHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----CH----HHHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEE
Confidence 999988888876 68999999999999999999999999999999985 33 5677888999989999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHH
Q 008424 333 PEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQM 412 (566)
Q Consensus 333 pEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~l 412 (566)
+||+.. .+.|+++
T Consensus 222 aEG~~~-------------------------------------------------------------------~~~la~~ 234 (320)
T 1pfk_A 222 TEHMCD-------------------------------------------------------------------VDELAHF 234 (320)
T ss_dssp ESSSSC-------------------------------------------------------------------HHHHHHH
T ss_pred eCCcch-------------------------------------------------------------------HHHHHHH
Confidence 999731 1234555
Q ss_pred HHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccc
Q 008424 413 VETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTA 492 (566)
Q Consensus 413 V~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vP 492 (566)
+++++ .|++|.++|||+||||.||+||+.||++||..|++++++|.+|+|+++++. ++..+|
T Consensus 235 i~~~~-----------~~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~-------~~~~~p 296 (320)
T 1pfk_A 235 IEKET-----------GRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNE-------QLVHHD 296 (320)
T ss_dssp HHHHH-----------SSCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETT-------EEEEEE
T ss_pred HHHHh-----------CCeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEEEE
Confidence 55542 478899999999999999999999999999999999999999999999986 478899
Q ss_pred hHHHH-h
Q 008424 493 LTALM-D 498 (566)
Q Consensus 493 l~~~~-~ 498 (566)
|.+++ +
T Consensus 297 l~~~~~~ 303 (320)
T 1pfk_A 297 IIDAIEN 303 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 99988 5
No 4
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=8.3e-80 Score=637.80 Aligned_cols=301 Identities=28% Similarity=0.417 Sum_probs=273.0
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CCC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IET 173 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~~ 173 (566)
+||||++|||||||||++|+++++++. +++++||||++||+||+++++++|++++++.|+++||+ +|||+|++ +++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGT-FLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHH--TTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSC-TTCCCCCGGGTS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCc-ccccCCCCccCC
Confidence 699999999999999999999999964 46889999999999999999999999999999999997 99999998 567
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I 253 (566)
++++++++++|++++||+||+||||||+++|++|+++ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 150 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTD--ATIGYDTACMTAMDAI 150 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCc--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 5899999999999999988 8999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008424 254 GNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333 (566)
Q Consensus 254 ~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlIp 333 (566)
++++.+|.|++ +|||||||||+||||||+||||++||+|||||+++ ++ +++++.|++|+++||+|++|+++
T Consensus 151 d~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~~----~~i~~~i~~~~~~gk~~~iIvva 221 (319)
T 1zxx_A 151 DKIRDTASSHH-RVFIVNVMGRNCGDIAMRVGVACGADAIVIPERPY----DV----EEIANRLKQAQESGKDHGLVVVA 221 (319)
T ss_dssp HHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----CH----HHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 99987777764 79999999999999999999999999999999985 33 56778889999899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHHH
Q 008424 334 EGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMV 413 (566)
Q Consensus 334 EGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~lV 413 (566)
||+.+ .+.|++++
T Consensus 222 EG~~~-------------------------------------------------------------------~~~l~~~i 234 (319)
T 1zxx_A 222 EGVMT-------------------------------------------------------------------ADQFMAEL 234 (319)
T ss_dssp TTTCC-------------------------------------------------------------------HHHHHHHH
T ss_pred CCcCh-------------------------------------------------------------------HHHHHHHH
Confidence 99732 11234444
Q ss_pred HHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccch
Q 008424 414 ETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493 (566)
Q Consensus 414 ~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vPl 493 (566)
+++ ..|++|+++|||+||||.||+||+.||++||..|++++++|.+|+|++++|. +...+||
T Consensus 235 ~~~-----------~~~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~-------~~~~~pl 296 (319)
T 1zxx_A 235 KKY-----------GDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENG-------KVTSHDI 296 (319)
T ss_dssp HHS-----------SCCCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETT-------EEEEEEH
T ss_pred HHh-----------hCceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEEEEH
Confidence 433 2478899999999999999999999999999999999999999999999986 4788999
Q ss_pred HHHHhHH
Q 008424 494 TALMDVE 500 (566)
Q Consensus 494 ~~~~~~e 500 (566)
.++++.+
T Consensus 297 ~~~~~~~ 303 (319)
T 1zxx_A 297 LDLFDES 303 (319)
T ss_dssp HHHTTCC
T ss_pred HHHHhcC
Confidence 9988643
No 5
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.4e-79 Score=663.83 Aligned_cols=335 Identities=25% Similarity=0.299 Sum_probs=297.8
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcC---CCEEecCcccccchhccCCccccccCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK---CKYVELTSNYIYPYRNQGGFDMICSGR 168 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---~~~~eLt~~~v~~~~n~GG~~~LGSsR 168 (566)
...+||||++|||||||||+||+|+++++...+...+||||++||+||++ +++++|++++++.|+++||+ +|||+|
T Consensus 95 ~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR 173 (487)
T 2hig_A 95 PTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT-ILGSSR 173 (487)
T ss_dssp GGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC-SSCCCC
T ss_pred CCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC-eeccCC
Confidence 34689999999999999999999999998665555699999999999975 69999999999999999997 999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHH
Q 008424 169 DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKI 248 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~ 248 (566)
++.. .++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||+++| +|||||||+++
T Consensus 174 ~~~~----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD--~T~GFdTAv~~ 247 (487)
T 2hig_A 174 GPQD----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSH--RTFGFQTAVEK 247 (487)
T ss_dssp SCCC----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSS--CCTTHHHHHHH
T ss_pred CCCC----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCC--CCCCHHHHHHH
Confidence 9863 35999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred HHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcC-CcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCe
Q 008424 249 YAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNY 327 (566)
Q Consensus 249 ~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~-pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~ 327 (566)
++++|++|+.||.|++++|||||||||+||||||+||||++ ||+|||||+++ ++ +.+++.|++|.+ +++|
T Consensus 248 ~~eaId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~----~l----~~i~~~i~~r~~-~k~~ 318 (487)
T 2hig_A 248 AVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI----SE----QEVMSLLERRFC-HSRS 318 (487)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCC----CH----HHHHHHHHHHTT-SCSE
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCC----CH----HHHHHHHHHHHh-cCCc
Confidence 99999999999999988899999999999999999999999 99999999985 44 356777788876 7999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHH
Q 008424 328 GVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEK 407 (566)
Q Consensus 328 gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~ 407 (566)
+||+|+||+...+. .. ...+|++||++++++ ++
T Consensus 319 ~IIvVaEGag~~~~------------------------------------~~---------~~~~Da~G~~~l~~i--~~ 351 (487)
T 2hig_A 319 CVIIVAEGFGQDWG------------------------------------RG---------SGGYDASGNKKLIDI--GV 351 (487)
T ss_dssp EEEEEETTTTGGGC------------------------------------CC-----------CBCTTSCBCCCCH--HH
T ss_pred EEEEEeCCCccccc------------------------------------cc---------ccccccccCcchhHH--HH
Confidence 99999999843110 00 125799999999987 68
Q ss_pred HHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceE
Q 008424 408 MLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWT 487 (566)
Q Consensus 408 lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~ 487 (566)
+|+++|+++++++..+. .+|++|+..+||+||||.||+||+.||++||..|++++++|.+|+|+++++. +
T Consensus 352 ~l~~~i~~~~~~~g~~~---~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi~~~-------~ 421 (487)
T 2hig_A 352 ILTEKVKAFLKANKSRY---PDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHN-------N 421 (487)
T ss_dssp HHHHHHHHHHHTTTTTS---SSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEEETT-------E
T ss_pred HHHHHHHHHHhhcCccc---cccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------E
Confidence 89999998887553211 1468899999999999999999999999999999999999999999999986 5
Q ss_pred EeccchHHHHhH
Q 008424 488 VSGTALTALMDV 499 (566)
Q Consensus 488 ~~~vPl~~~~~~ 499 (566)
+..+||.++++.
T Consensus 422 i~~vPl~ev~~~ 433 (487)
T 2hig_A 422 YILVPIKVATSV 433 (487)
T ss_dssp EEEEEHHHHTTE
T ss_pred EEEEEHHHHHcc
Confidence 788999998853
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=1e-76 Score=615.95 Aligned_cols=302 Identities=26% Similarity=0.357 Sum_probs=271.2
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC-CC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK-IE 172 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k-~~ 172 (566)
.+|||||||||||||||++|+|+++++ .+++.+||||++||+||+++++++|+++.++.++++||+ +|||+|.+ +.
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a--~~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt-~lgtsR~~~~~ 77 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKA--IYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGT-KLYTARCPEFK 77 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHH--HHTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSC-TTCCCCCHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHH--HHCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCC-ccccCCCCccc
Confidence 379999999999999999999999985 456889999999999999999999999999999999998 99999985 56
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEM 252 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~ 252 (566)
++|++++++++|++++||+||+||||||+++|++|+|+ .++||||||||||||+++| +|||||||+++++++
T Consensus 78 ~~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td--~t~GfdTA~~~~~~a 149 (319)
T 4a3s_A 78 TVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTD--FTIGFDTALNTVIDA 149 (319)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCC--CCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999885 5789999999999999888 899999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 008424 253 IGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332 (566)
Q Consensus 253 I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvVlI 332 (566)
|++++.+|.|+++ |||||||||+|||||+++|||++||+|||||++++ .+.+++.|+++.++|++|++|+|
T Consensus 150 i~~i~~~a~s~~r-v~ivEvMGR~aG~lA~~a~la~ga~~iliPE~~~~--------~~~~~~~i~~~~~~g~~~~iivv 220 (319)
T 4a3s_A 150 IDKIRDTATSHER-TYVIEVMGRHAGDIALWAGLAGGAESILIPEADYD--------MHEIIARLKRGHERGKKHSIIIV 220 (319)
T ss_dssp HHHHHHHHHHHTC-EEEEEECCTTCCHHHHHHHHHHTCSEEEBTTBCCC--------HHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHhhhhccCC-eEEEEeCCcchhHHHHHHHhccCCCEEEecCCCCC--------HHHHHHHHHHHHHcCCCceEEEE
Confidence 9999988877765 79999999999999999999999999999999863 35667778888889999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHHHH
Q 008424 333 PEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQM 412 (566)
Q Consensus 333 pEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~~l 412 (566)
+||+... ..+++.
T Consensus 221 aEG~~~~-------------------------------------------------------------------~~~~~~ 233 (319)
T 4a3s_A 221 AEGVGSG-------------------------------------------------------------------VEFGKR 233 (319)
T ss_dssp ETTTCCH-------------------------------------------------------------------HHHHHH
T ss_pred ECCCCcc-------------------------------------------------------------------hHHHHH
Confidence 9998531 012333
Q ss_pred HHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCccceEEeccc
Q 008424 413 VETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTA 492 (566)
Q Consensus 413 V~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~tG~mv~i~nl~~~~~~w~~~~vP 492 (566)
+++++ .+++|...+||.|||+.||+||+.+|++||..|++++++|.+|+|++++|. +...+|
T Consensus 234 ~~~~~-----------g~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~-------~~~~~p 295 (319)
T 4a3s_A 234 IEEET-----------NLETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNN-------KLVDHD 295 (319)
T ss_dssp HHHHH-----------CCCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETT-------EEEEEE
T ss_pred HHHhC-----------CceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEEe
Confidence 33333 367788999999999999999999999999999999999999999999986 467799
Q ss_pred hHHHHhHH
Q 008424 493 LTALMDVE 500 (566)
Q Consensus 493 l~~~~~~e 500 (566)
|.++++.+
T Consensus 296 l~~~~~~~ 303 (319)
T 4a3s_A 296 IIEILETK 303 (319)
T ss_dssp HHHHSSSC
T ss_pred HHHHHhcc
Confidence 99987643
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.3e-72 Score=636.58 Aligned_cols=342 Identities=23% Similarity=0.287 Sum_probs=297.2
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCC--CEEecCcccccchhccCCccccccCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRD 169 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGSsR~ 169 (566)
.+++||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++|++++++.|+++||+ +|||+|+
T Consensus 13 ~~~krIaIltsGGdaPGmNaaIravvr~a--~~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGT-iLGSsR~ 89 (762)
T 3o8l_A 13 GVGKAIAVLTSGGDAQGMNAAVRAVVRVG--IFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGT-VIGSARC 89 (762)
T ss_dssp TSSCEEEEECCSSCCTTHHHHHHHHHHHH--HHTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSC-SSCCCCC
T ss_pred ccCcEEEEEccCCCchhHhHHHHHHHHHH--HHCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCc-cccCCCC
Confidence 45689999999999999999999999975 45689999999999999999 9999999999999999997 9999999
Q ss_pred C-CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH-----------------HhhcCCCceEEEeeccccCCC
Q 008424 170 K-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH-----------------FRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 170 k-~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~-----------------~~~~~~~i~VIGVPKTIDNDL 231 (566)
+ +.+++++++++++|++++||+||+||||||+++|+.|+++ +++++.+++|||||||||||+
T Consensus 90 ~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl 169 (762)
T 3o8l_A 90 KDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDF 169 (762)
T ss_dssp CGGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCC
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCC
Confidence 8 5678999999999999999999999999999999988654 345567899999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHH
Q 008424 232 KCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 311 (566)
Q Consensus 232 ~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~ 311 (566)
+++| +|||||||+++++++|++|+.+|.|++| +||||||||+||||||++|||++||+|||||++++. ++++
T Consensus 170 ~gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-v~iVEvMGR~aG~LAl~aglA~gad~ilIPE~p~~~-----~~~~ 241 (762)
T 3o8l_A 170 CGTD--MTIGTDSALHRITEIVDAITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWED 241 (762)
T ss_dssp SSCS--CCBTHHHHHHHHHHHHHHHHTTCCSSCC-EEEEEECCSSCCHHHHHHHHHHTCSBCCCTTSCCCS-----SCHH
T ss_pred CCCc--CCcCchhHHHHHHHHHHHHHHhhhcCcc-EEEEEeCCcchhHHHHHHHHhcCCCEEEecCCCCCc-----chHH
Confidence 9988 8999999999999999999999998776 799999999999999999999999999999999753 4578
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhc
Q 008424 312 YIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLE 391 (566)
Q Consensus 312 ~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 391 (566)
++++.|++|+++|++|++|+|+||+.
T Consensus 242 ~~~~~i~~~~~~gk~~~iVvVaEGa~------------------------------------------------------ 267 (762)
T 3o8l_A 242 HLCRRLSETRTRGSRLNIIIVAEGAI------------------------------------------------------ 267 (762)
T ss_dssp HHHHHHHHHHHTTCSCCBBCEETTCC------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCcc------------------------------------------------------
Confidence 99999999999999999999999985
Q ss_pred cCCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC--
Q 008424 392 RDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK-- 469 (566)
Q Consensus 392 rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~-- 469 (566)
|.+|++.. .+.|+++|++++ .+++|...|||.||||.||+||+.||+.||..|++++++|.
T Consensus 268 -d~~G~~i~-----~~~l~~~i~~~~-----------g~~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~AV~~~~~g~~~ 330 (762)
T 3o8l_A 268 -DRNGKPIT-----SEGVKDLVVRRL-----------GYDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPD 330 (762)
T ss_dssp -CSSSCCCC-----HHHHHHHHHHHT-----------CCCEEEECCCSSTTCSCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred -CCCCCCcH-----HHHHHHHHHHHh-----------CCCcceeecCccccCCCCChHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33454432 234666665553 37889999999999999999999999999999999999999
Q ss_pred -CceEEEecCCCCCccceEEeccchHHHHhHHHhcCC---CcceeeecccccCChhhHH
Q 008424 470 -TGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGK---FKPVIKKAMVELDGAPFKK 524 (566)
Q Consensus 470 -tG~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~g~~f~~ 524 (566)
+|+|+++++. ++..+||.++++.++...+ .+.| ...+.+-|..|..
T Consensus 331 ~~~~~v~~~~~-------~i~~~Pl~e~~~~~k~v~~~~~~~~~--~~a~~~rg~~f~~ 380 (762)
T 3o8l_A 331 TPACVVSLSGN-------QAVRLPLMECVQVTKDVTKAMDEKRF--DEAMKLRGRSFMN 380 (762)
T ss_dssp SCCEEEEEETT-------EEEEEEHHHHHHHHHHHHHHHHSSCH--HHHHHHHCTHHHH
T ss_pred CceEEEEEECC-------EEEEEEHHHHHhccCCCChhhccchH--HHHHHhhCchHHH
Confidence 8999999987 4788999999887665332 2222 2234455666653
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-71 Score=625.55 Aligned_cols=343 Identities=21% Similarity=0.267 Sum_probs=294.5
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCC---EEecCcccccchhccCCccccccCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCK---YVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+||||++|||||||||++|+++++++. +.+.+||||++||+||++++ +.+|++++++.|+++||+ +|||+|++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 79 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAI--FKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGT-NIGTARCM 79 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 4799999999999999999999999864 45789999999999999986 789999999999999998 99999998
Q ss_pred C-CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH-----------------hhcCCCceEEEeeccccCCCC
Q 008424 171 I-ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF-----------------RSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 171 ~-~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~-----------------~~~~~~i~VIGVPKTIDNDL~ 232 (566)
. .+++.+.+++++|++++||+||+||||||+++|.+|+++| .+++.+++|||||||||||++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 80 EFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 4 5678899999999999999999999999999999987643 234568999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHH
Q 008424 233 CKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY 312 (566)
Q Consensus 233 ~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~ 312 (566)
+|| +|||||||+++++++|++|..+|.|++| +||||||||+||||||++|||++||+|||||+++ +++++.++
T Consensus 160 gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-vfvVEvMGR~aG~LAl~aglA~gAd~ilIPE~p~----~~~~~~~~ 232 (766)
T 3o8o_B 160 TTD--ATIGAYSALDRICKAIDYVEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEKPA----TSSEWQDQ 232 (766)
T ss_dssp TCS--CCBTHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHHTCSEEECTTCCC----CTTHHHHH
T ss_pred CCC--CCCChhHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhcCCCEEEccCCCC----ChHHHHHH
Confidence 988 8999999999999999999999998776 7999999999999999999999999999999985 67788899
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhcc
Q 008424 313 IVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLER 392 (566)
Q Consensus 313 i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 392 (566)
|++.+++|...||+|+||+|+||+.+.
T Consensus 233 v~~~i~~~~~~gk~~~IVvVaEGa~~~----------------------------------------------------- 259 (766)
T 3o8o_B 233 MCDIVSKHRSRGKRTTIVVVAEGAIAA----------------------------------------------------- 259 (766)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBCT-----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCcccc-----------------------------------------------------
Confidence 999999999999999999999998641
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 008424 393 DPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKT-- 470 (566)
Q Consensus 393 D~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~t-- 470 (566)
.|+.. +++.|++++++++ .+++|...|||.||||.||+||+.+|++||..|++++.+|.+
T Consensus 260 --~~~~~-----~~~~l~~~i~~~~-----------g~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~~~~~g~~~~ 321 (766)
T 3o8o_B 260 --DLTPI-----SPSDVHKVLVDRL-----------GLDTRITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDT 321 (766)
T ss_dssp --TSCBC-----CHHHHHHHHHHTT-----------CCCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred --cCCcc-----hHHHHHHHHHHHh-----------CCceeEcccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 11110 1234444444332 478999999999999999999999999999999999999987
Q ss_pred -ceEEEecCCCCCccceEEeccchHHHHhHHHhcCC---CcceeeecccccCChhhHHHH
Q 008424 471 -GLISSVGNLAAPVEEWTVSGTALTALMDVERRHGK---FKPVIKKAMVELDGAPFKKFV 526 (566)
Q Consensus 471 -G~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~g~~f~~~~ 526 (566)
|+|+++++.+ +..+||.+.+...+...+ .|.+ ..-++|.|..|...-
T Consensus 322 ~~~mv~~~~~~-------i~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~~ 372 (766)
T 3o8o_B 322 PSPLIAVNENK-------IVRKPLMESVKLTKAVAEAIQAKDF--KRAMSLRDTEFIEHL 372 (766)
T ss_dssp CCEEEEESSSC-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHHSCTTHHHHH
T ss_pred CceEEEEECCE-------EEEEEHHHHHhccCccHHHHhcCCH--HHHHHccCHHHHHHH
Confidence 8999999885 678999998876554321 1211 334677787776543
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-71 Score=623.36 Aligned_cols=344 Identities=19% Similarity=0.261 Sum_probs=294.0
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCC--CEEecCcccccchhccCCccccccCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
+++||||++|||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|++++++.|+++||+ +|||+|++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 80 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGI--HFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGT-LIGTARSM 80 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 45899999999999999999999999864 4688999999999999998 7999999999999999998 99999998
Q ss_pred -CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH-----------------hhcCCCceEEEeeccccCCCC
Q 008424 171 -IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF-----------------RSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 171 -~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~-----------------~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+.+++.+.+++++|++++||+||+||||||+++|..|+++| .+++.+++||||||||||||+
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 45778899999999999999999999999999999887532 234568999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHH
Q 008424 233 CKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY 312 (566)
Q Consensus 233 ~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~ 312 (566)
+|| +|||||||+++++++|++|..+|.|+++ |||||||||+||||||++|||++||+|||||+++ +++++.++
T Consensus 161 gTD--~TiGfdTAl~~i~eaid~i~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~gAd~ilIPE~p~----~~~~~~~~ 233 (787)
T 3o8o_A 161 GTD--STIGAYSALERICEMVDYIDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPERAV----PHGKWQDE 233 (787)
T ss_dssp TSS--CCEEHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHTTCSEEECGGGCB----CTTTHHHH
T ss_pred CCC--CCCCcHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhhCCCEEEeCCCCC----ChHHHHHH
Confidence 988 8999999999999999999999998765 8999999999999999999999999999999985 66778899
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhcc
Q 008424 313 IVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLER 392 (566)
Q Consensus 313 i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 392 (566)
|++.+++|...||+|+||+|+||+.+. +
T Consensus 234 v~~~i~~~~~~gk~~~IVvVaEGa~~~----------------------~------------------------------ 261 (787)
T 3o8o_A 234 LKEVCQRHRSKGRRNNTIIVAEGALDD----------------------Q------------------------------ 261 (787)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBBT----------------------T------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCccc----------------------c------------------------------
Confidence 999999999999999999999998641 1
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 008424 393 DPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKT-- 470 (566)
Q Consensus 393 D~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~t-- 470 (566)
|+.. +...+++++++ + .|++|...|||.||||.||+|||.+|++||..|++++++|.+
T Consensus 262 ---~~~~-----~~~~~~~~i~~-~-----------g~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~ 321 (787)
T 3o8o_A 262 ---LNPV-----TANDVKDALIE-L-----------GLDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPET 321 (787)
T ss_dssp ---SCBC-----CHHHHHHHHHH-H-----------TCCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHTCCSSC
T ss_pred ---Ccch-----hHHHHHHHHHH-h-----------CCcceeeccCHhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1110 11233444433 2 378899999999999999999999999999999999999997
Q ss_pred -ceEEEecCCCCCccceEEeccchHHHHhHHHhcCC---CcceeeecccccCChhhHHHHH
Q 008424 471 -GLISSVGNLAAPVEEWTVSGTALTALMDVERRHGK---FKPVIKKAMVELDGAPFKKFVS 527 (566)
Q Consensus 471 -G~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~g~~f~~~~~ 527 (566)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...-+
T Consensus 322 ~~~mVg~~~~~-------i~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~~~ 373 (787)
T 3o8o_A 322 PSPLIGILENK-------IIRMPLVESVKLTKSVATAIENKDF--DKAISLRDTEFIELYE 373 (787)
T ss_dssp CCEEEEESSSS-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHTSCTTHHHHHH
T ss_pred CCeEEEEECCE-------EEEEEHHHHHhccCCchHhhhcCCH--HHHHhccCHHHHHHHH
Confidence 7999999885 678999998776554321 1222 3447788888765433
No 10
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=4.3e-71 Score=624.26 Aligned_cols=327 Identities=20% Similarity=0.265 Sum_probs=289.5
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
.+++||||++|||||||||++|+++++++. +.+++||||++||+||+++++++|++++++.|+++||+ +|||+|.++
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGL--IQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGS-KLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSC-SSCEECCCS
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCc-eeecCCCCc
Confidence 456899999999999999999999999865 34789999999999999999999999999999999998 999999876
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC-CCceEEEeeccccCCCCCCCCCCCCChHHHHHHHH
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN-LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~-~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~s 250 (566)
++++++++++|++++||+||+||||||+++|.+|++++.+++ .+++||||||||||||+++| +|||||||+++++
T Consensus 475 --~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 475 --KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSD--FSVGADTALNTIC 550 (762)
T ss_dssp --GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCc--CCCChHHHHHHHH
Confidence 578999999999999999999999999999999999988764 58999999999999999988 8999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHHcCCCeEEE
Q 008424 251 EMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVI 330 (566)
Q Consensus 251 e~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~~gk~~gvV 330 (566)
++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.++. +.+|.+.+++|++|
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~gad~ilIPE~~~----~l~~~~~~i~~-~~~r~~~~~~~~iV 625 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEPF----TIRDLQANVEH-LVQKMKTTVKRGLV 625 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTTCSEEECSSSCC----CHHHHHHHHHH-HHHHHTSSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEECCCCC----CHHHHHHHHHH-HHHHHhcCCCceEE
Confidence 99999999998888889999999999999999999999999999999984 78888877766 66788899999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhHHHHH
Q 008424 331 LIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLI 410 (566)
Q Consensus 331 lIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te~lL~ 410 (566)
+++||+.... +.+++.
T Consensus 626 vvaEga~~~~----------------------------------------------------------------~~~~~~ 641 (762)
T 3o8l_A 626 LRNEKCNENY----------------------------------------------------------------TTDFIF 641 (762)
T ss_dssp EEETTSCSSS----------------------------------------------------------------CHHHHH
T ss_pred EEECCCCccc----------------------------------------------------------------hHHHHH
Confidence 9999985310 012233
Q ss_pred HHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcC---------------CCceEEE
Q 008424 411 QMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSG---------------KTGLISS 475 (566)
Q Consensus 411 ~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g---------------~tG~mv~ 475 (566)
++++++ . +..|++|...|||.||||.||+|||.+|++||..|++++.+| .+|+|++
T Consensus 642 ~~~~~~----~-----~~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~~~~~vg 712 (762)
T 3o8l_A 642 NLYSEE----G-----KGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLG 712 (762)
T ss_dssp HHHHHH----T-----TTTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSSTTEEEEE
T ss_pred HHHHhh----c-----cCCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCceEEEE
Confidence 333332 1 135899999999999999999999999999999999999986 7899999
Q ss_pred ecCCCCCccceEEeccchHHHHh---HHHhcCCCccee
Q 008424 476 VGNLAAPVEEWTVSGTALTALMD---VERRHGKFKPVI 510 (566)
Q Consensus 476 i~nl~~~~~~w~~~~vPl~~~~~---~e~~~g~~~p~i 510 (566)
+++. ++..+||.++.. ++.|.++..+|.
T Consensus 713 ~~~~-------~i~~~pl~e~~~~~d~~~r~~~~~~w~ 743 (762)
T 3o8l_A 713 MRKR-------ALVFQPVTELQNQTDFEHRIPKEQWWL 743 (762)
T ss_dssp EETT-------EEEEEEHHHHGGGEETTTTEESSCGGG
T ss_pred EECC-------EEEEEEHHHHhhccchhhcCCCCchHH
Confidence 9997 477899998764 556677777775
No 11
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.7e-70 Score=625.99 Aligned_cols=345 Identities=21% Similarity=0.281 Sum_probs=293.1
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCC---EEecCcccccchhccCCccccccCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCK---YVELTSNYIYPYRNQGGFDMICSGR 168 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---~~eLt~~~v~~~~n~GG~~~LGSsR 168 (566)
..++||||++|||||||||+||+++++++. +.+.+||||++||+||++++ +.+|++++++.|+++||+ +|||+|
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~--~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGT-iLGSsR 255 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGI--YKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGT-NIGTAR 255 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHH--HTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSC-SSCCCC
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCc-eeccCC
Confidence 346899999999999999999999999864 46889999999999999986 899999999999999998 999999
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHH-----------------HhhcCCCceEEEeeccccCC
Q 008424 169 DKI-ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH-----------------FRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 169 ~k~-~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~-----------------~~~~~~~i~VIGVPKTIDND 230 (566)
++. .+++.+.+++++|++++||+||+||||||+++|+.|+++ ..+++.+++|||||||||||
T Consensus 256 ~~~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDND 335 (941)
T 3opy_B 256 CKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDND 335 (941)
T ss_dssp CSGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCC
Confidence 984 567889999999999999999999999999999988753 34456789999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHH
Q 008424 231 LKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVT 310 (566)
Q Consensus 231 L~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~ 310 (566)
|+++| +|||||||+++++++|++|..+|.|++| +||||||||+||||||++|||++||+|||||+++ +++++.
T Consensus 336 l~gTD--~TiGfdTAv~~i~eaId~I~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~GAd~IlIPE~p~----~~~~~~ 408 (941)
T 3opy_B 336 MSSTD--ATIGAFSSLDRICRAIDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLATSADYILIPEKPA----SSREWQ 408 (941)
T ss_dssp CSSCS--SCEEHHHHHHHHHHHHHHHHSCC-CCSE-EEEEECCCSSCCHHHHHHHHHTTCSEEECTTSCC----CSSCHH
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCCcccHHHHHHHHhcCCCEEEECCCCC----ChHHHH
Confidence 99988 8999999999999999999999988754 8999999999999999999999999999999985 566788
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhh
Q 008424 311 DYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLML 390 (566)
Q Consensus 311 ~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~ 390 (566)
++|++.+++|...||+|+||+|+||+.+.
T Consensus 409 ~~v~~~i~~~~~~gk~~~IVVVAEGa~~~--------------------------------------------------- 437 (941)
T 3opy_B 409 DQMCDIVGKHRARGKRKTIVIVAEGAISN--------------------------------------------------- 437 (941)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEECTTCBCT---------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCcccc---------------------------------------------------
Confidence 99999999999999999999999998641
Q ss_pred ccCCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 008424 391 ERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKT 470 (566)
Q Consensus 391 ~rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~t 470 (566)
.|+.. +.+.++++ ++++. .+++|...+||.||||.||+|||.+|++||..|++++++|.+
T Consensus 438 ----~~~~i-----~~~~l~~~----i~~~~-------g~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~ 497 (941)
T 3opy_B 438 ----DLSPI-----SCDQVKDV----LVNRL-------GLDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDA 497 (941)
T ss_dssp ----TCCBC-----CHHHHHHH----HHHTS-------CCEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ----cCCcc-----hHHHHHHH----HHHHh-------CCceeecccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCC
Confidence 11111 12233444 43332 378999999999999999999999999999999999999987
Q ss_pred ---ceEEEecCCCCCccceEEeccchHHHHhHHHhcCC---CcceeeecccccCChhhHHHH
Q 008424 471 ---GLISSVGNLAAPVEEWTVSGTALTALMDVERRHGK---FKPVIKKAMVELDGAPFKKFV 526 (566)
Q Consensus 471 ---G~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~g~~f~~~~ 526 (566)
|+|+++++.+ +..+||.+.+...+...+ .|.+ ..-+.|.|..|...-
T Consensus 498 ~~~g~mVg~~~~~-------iv~~Pl~e~v~~~k~v~~a~~~~~f--~~a~~lr~~~f~~~~ 550 (941)
T 3opy_B 498 DTPSPMIAIKEDQ-------ITRVPLVDAVELTQQVAKSIESRNF--KKAISLRDSEFVEHM 550 (941)
T ss_dssp TSCCEEEEESSSC-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHHSCHHHHHHH
T ss_pred CCCceEEEEECCE-------EEEEEHHHHHhccCCcHHHHhcCCH--HHHHHccCHHHHHHH
Confidence 7999999885 678999998776554321 1211 334677887776543
No 12
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4e-70 Score=621.10 Aligned_cols=346 Identities=22% Similarity=0.246 Sum_probs=294.0
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCC--CEEecCcccccchhccCCccccccCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRD 169 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGSsR~ 169 (566)
...+||||++|||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|++++++.|+++||+ +|||+|+
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~--~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGT-iLGTsR~ 284 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGT-IIGTARC 284 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHH--HTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSC-SSCCCCS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-cccCCCC
Confidence 446899999999999999999999999864 4688999999999999998 5999999999999999997 9999999
Q ss_pred CC-CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH-------h----------hcCCCceEEEeeccccCCC
Q 008424 170 KI-ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF-------R----------SKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 170 k~-~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~-------~----------~~~~~i~VIGVPKTIDNDL 231 (566)
+. .+++++++++++|++++||+||+||||||+++|+.|++++ . +.+.+++||||||||||||
T Consensus 285 ~~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl 364 (989)
T 3opy_A 285 KEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDM 364 (989)
T ss_dssp SSTTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCC
T ss_pred CcccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCC
Confidence 84 5788999999999999999999999999999999998643 2 2346799999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHH
Q 008424 232 KCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 311 (566)
Q Consensus 232 ~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~ 311 (566)
+++| +|||||||+++++++|++|..+|.|++ ++||||||||+||||||++|||++||+|||||+++ +++++.+
T Consensus 365 ~gTD--~TiGFdTAl~~i~eaId~I~~TA~Sh~-RvfVVEVMGR~aG~LAl~agLA~GAd~IlIPE~pf----~l~~~~~ 437 (989)
T 3opy_A 365 CGTD--STIGAYSSLERIIELVDYIDATAASHS-RAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPP----SESNWKD 437 (989)
T ss_dssp TTCS--CCEEHHHHHHHHHHHHHHHHSSCCCTT-EEEEEECCCSSCTHHHHHHHHHHTCSEEECTTSCC----CTTTHHH
T ss_pred CCCC--CCCChhhHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCchhHHHHHHHHhcCCCEEEeCCCCC----ChHHHHH
Confidence 9988 899999999999999999999998765 58999999999999999999999999999999986 6677889
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhc
Q 008424 312 YIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLE 391 (566)
Q Consensus 312 ~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 391 (566)
+|++.+++|..+||+|+||+|+||+.+. +
T Consensus 438 ~l~~~i~k~~~~Gk~~~IVVVAEGa~~~----------------------~----------------------------- 466 (989)
T 3opy_A 438 DLKKVCLRHREKGRRKTTVIVAEGAIDD----------------------Q----------------------------- 466 (989)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCBCT----------------------T-----------------------------
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccc----------------------c-----------------------------
Confidence 9999999998999999999999998641 0
Q ss_pred cCCCCCcccchhhhHHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 008424 392 RDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKT- 470 (566)
Q Consensus 392 rD~~G~~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~t- 470 (566)
|+. + +.+. +++++++ ..+++|...+||.||||.||+|||.||+.||..|++++++|.+
T Consensus 467 ----~~~----i-~~~~----l~~~l~~--------~G~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~ 525 (989)
T 3opy_A 467 ----LNP----I-TSEE----VKDVLVE--------IGLDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPA 525 (989)
T ss_dssp ----SCB----C-CHHH----HHHHHHT--------TTCEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred ----ccc----c-hHHH----HHHHHHH--------hCcchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 110 0 0112 2333332 1378899999999999999999999999999999999999985
Q ss_pred --ceEEEecCCCCCccceEEeccchHHHHhHHHhcCC---CcceeeecccccCChhhHHHHHh
Q 008424 471 --GLISSVGNLAAPVEEWTVSGTALTALMDVERRHGK---FKPVIKKAMVELDGAPFKKFVSM 528 (566)
Q Consensus 471 --G~mv~i~nl~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~g~~f~~~~~~ 528 (566)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-+.|.|..|...-..
T Consensus 526 ~~g~mVgl~~~~-------iv~vPl~e~v~~~k~V~~a~~~k~f--~~a~~lr~~~F~~~~~~ 579 (989)
T 3opy_A 526 IPSPVISILENK-------IVRQPLVESVAQTKTVSAAIEAKDF--DKALQLRDQEFATSYEN 579 (989)
T ss_dssp SCCEEEEESSSS-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHTSCHHHHHHHHH
T ss_pred CCCeEEEEECCE-------EEEEEHHHHHhccCCchHhhhccCH--HHHHhccChHHHHHHHH
Confidence 8999999885 678999998876554321 1222 34477888888654333
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-69 Score=609.27 Aligned_cols=339 Identities=18% Similarity=0.210 Sum_probs=288.7
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhc-CCCEEecCcccccchhccCCccccccCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIM-KCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+++||||++|||||||||+||+++++++. +.+++||||++||+||+ ++++++|++++++.|+++||+ +|||+|++
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt-~LGTsR~~ 467 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCL--SHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGS-EIGTNRSV 467 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-TTCCBCCC
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCc-eeccCCCC
Confidence 456899999999999999999999999864 45799999999999999 899999999999999999997 99999997
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC-CCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN-LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~-~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
+. +++++++++|++++||+||+||||||+++|+.|++++.+++ ++++||||||||||||++|| +|||||||++++
T Consensus 468 ~~--~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD--~t~GfdTA~~~~ 543 (787)
T 3o8o_A 468 AS--EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTE--YSLGVDTCLNAL 543 (787)
T ss_dssp GG--GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHH
T ss_pred ch--hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCc--CCCCchHHHHHH
Confidence 63 46889999999999999999999999999999999876553 57999999999999999988 899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHH-H--cCCC
Q 008424 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRA-E--LGYN 326 (566)
Q Consensus 250 se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~-~--~gk~ 326 (566)
+++|++|+.+|.|++++|||||||||+||||||+||||++||+|||||+++ +++++.+.|....+++. . ++++
T Consensus 544 ~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~iliPE~~~----~~~~~~~~i~~~~~~~~~~~g~~~~ 619 (787)
T 3o8o_A 544 VNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKKI----DLASIREDITLLKENFRHDKGENRN 619 (787)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTTCSEEECSSSCC----CHHHHHHHHHHHHHHHHHCCSCSSC
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcCCCEEEeCCCCC----CHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999998888878899999999999999999999999999999999984 67777766654443332 1 3456
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhhH
Q 008424 327 YGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETE 406 (566)
Q Consensus 327 ~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~te 406 (566)
+.+|+++||.... .+.
T Consensus 620 ~~iivvaEg~~~~----------------------------------------------------------------~~~ 635 (787)
T 3o8o_A 620 GKLLVRNEQASSV----------------------------------------------------------------YST 635 (787)
T ss_dssp CEEEEEETTSCSS----------------------------------------------------------------SCH
T ss_pred ceEEEEeCCccCC----------------------------------------------------------------CCH
Confidence 6899999996421 012
Q ss_pred HHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 008424 407 KMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK----------------- 469 (566)
Q Consensus 407 ~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~----------------- 469 (566)
..|+++|++++. ..|++|...|||.||||.||+|||.+|++||..|++++.++.
T Consensus 636 ~~la~~i~~~~~---------~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~ 706 (787)
T 3o8o_A 636 QLLADIISEASK---------GKFGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFK 706 (787)
T ss_dssp HHHHHHHHHHHT---------TSSEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC-------------
T ss_pred HHHHHHHHHHhC---------CCceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccc
Confidence 356666666542 258999999999999999999999999999999999998866
Q ss_pred ----------------CceEEEecCCCCCccceEEeccchHHHHh----HHHhcCCCcceee-ecccc-cCChh
Q 008424 470 ----------------TGLISSVGNLAAPVEEWTVSGTALTALMD----VERRHGKFKPVIK-KAMVE-LDGAP 521 (566)
Q Consensus 470 ----------------tG~mv~i~nl~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~-~~~V~-l~g~~ 521 (566)
+++|+++++. +...+|+.++.+ ++.|.++..+|.+ +.+++ |.|.+
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~iG~~~~-------~i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~~~~~l~~~~ 773 (787)
T 3o8o_A 707 FDTHGEKVPTVEHEDDSAAVICVNGS-------HVSFKPIANLWENETNVELRKGFEVHWAEYNKIGDILSGRL 773 (787)
T ss_dssp -------------CGGGEEEEEEETT-------EEEEEEHHHHTTSBCTTTTCSBSCCCCHHHHHHHHHHTTHH
T ss_pred cccccccccccccCCCceEEEEEECC-------EEEEeeHHHHHhhccchhhCCCcChHHHhHHHHHHHhcCCH
Confidence 6889999987 477789998753 6778888888864 23334 55554
No 14
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-68 Score=600.11 Aligned_cols=329 Identities=21% Similarity=0.264 Sum_probs=283.5
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcC-CCEEecCcccccchhccCCccccccCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK-CKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~-~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+.+||||++|||||||||++|+++++++. +.+++||||++||+||++ +++.+|++++++.|+++||+ +|||+|++
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~ 467 (766)
T 3o8o_B 391 DKRLKIAIVNVGAPAGGINSAVYSMATYCM--SQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGS-EIGTNRVT 467 (766)
T ss_dssp SCCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSC-TTCCCCCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCc-eEccCCCC
Confidence 345899999999999999999999999864 357899999999999997 78999999999999999997 99999987
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC-CCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN-LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~-~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
+. ++++++++++|++++||+||+||||||+++|..|+++..+.+ .+++||||||||||||++|| +|||||||++++
T Consensus 468 ~~-~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~T~GfdTA~~~~ 544 (766)
T 3o8o_B 468 PE-EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTE--YSLGSDTALNAL 544 (766)
T ss_dssp GG-GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCS--CCBTHHHHHHHH
T ss_pred Cc-cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCC--CCCChhHHHHHH
Confidence 64 446889999999999999999999999999999998765433 57999999999999999988 899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHH----cCC
Q 008424 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAE----LGY 325 (566)
Q Consensus 250 se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~----~gk 325 (566)
+++|++|+.+|.|++++|||||||||+||||||++|||++|++|||||+++ +++++.+.|....+ +.. +++
T Consensus 545 ~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~ilIPE~~~----~~~~~~~~i~~~~~-~~~~~~~~~~ 619 (766)
T 3o8o_B 545 MEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGI----SLEQLSEDIEYLAQ-SFEKAEGRGR 619 (766)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHTCSEEECTTTCC----CHHHHHHHHHHHHH-HHHHHTTCTT
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhCCCEEEeCCCCC----CHHHHHHHHHHHHH-HHhhhhccCC
Confidence 999999998888878889999999999999999999999999999999985 66666666543332 222 457
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhh
Q 008424 326 NYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIET 405 (566)
Q Consensus 326 ~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~t 405 (566)
++.+|+++||...-. +
T Consensus 620 ~~~iivvaEg~~~~~----------------------------------------------------------------~ 635 (766)
T 3o8o_B 620 FGKLILKSTNASKAL----------------------------------------------------------------S 635 (766)
T ss_dssp CCEEEEEEGGGCSSC----------------------------------------------------------------C
T ss_pred CceEEEEeCCcCCCC----------------------------------------------------------------c
Confidence 889999999863200 1
Q ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008424 406 EKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK---------------- 469 (566)
Q Consensus 406 e~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~---------------- 469 (566)
...|++++++++. ..|++|...|||.||||.||+|||.+|+++|..|++++.+|.
T Consensus 636 ~~~la~~i~~~~~---------~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~ 706 (766)
T 3o8o_B 636 ATKLAEVITAEAD---------GRFDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNAD 706 (766)
T ss_dssp HHHHHHHHHHHHT---------TSCEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCC
T ss_pred HHHHHHHHHHHhC---------CCceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 2346666666542 258999999999999999999999999999999999999999
Q ss_pred ------CceEEEecCCCCCccceEEeccchHHHHh----HHHhcCCCcceee
Q 008424 470 ------TGLISSVGNLAAPVEEWTVSGTALTALMD----VERRHGKFKPVIK 511 (566)
Q Consensus 470 ------tG~mv~i~nl~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~ 511 (566)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.+
T Consensus 707 ~~~~~~~~~~vG~~~~~-------i~~~pi~~~~~~~~d~~~r~~~~~~w~~ 751 (766)
T 3o8o_B 707 DKTISDTAAVVGVKGSH-------VVYNSIRQLYDYETEVSMRMPKVIHWQA 751 (766)
T ss_dssp CHHHHTTSEEEECSSSC-------CEEEEHHHHHHHTBCGGGSSBSSCSCHH
T ss_pred cccCCCceEEEEEECCE-------EEEEeHHHHHhhccchhhCCCCChhHHh
Confidence 89999999985 56689998864 4778888888763
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.2e-68 Score=607.25 Aligned_cols=328 Identities=20% Similarity=0.244 Sum_probs=282.0
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhc-CCCEEecCcccccchhccCCccccccCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIM-KCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+++||||++|||||||||++|+++++++. +.+++||||++||+||+ ++++++|++++++.|+++||+ +|||+|++
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 645 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCM--SRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGS-EIGTNRTL 645 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-SSCEECCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCc-EeccCCCC
Confidence 346899999999999999999999999864 35789999999999999 799999999999999999997 99999987
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC-CCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN-LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~-~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
+. ++++++++++|++++||+||+||||||+++|..|+++.++.+ .+++|||||||||||++++| +|||||||++++
T Consensus 646 ~~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD--~TiGfdTA~~~i 722 (941)
T 3opy_B 646 PN-DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTE--YSLGSDTCLNSF 722 (941)
T ss_dssp TT-TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCC--CCCChHHHHHHH
Confidence 64 346789999999999999999999999999999999765543 57999999999999999988 899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHH----cCC
Q 008424 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAE----LGY 325 (566)
Q Consensus 250 se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~----~gk 325 (566)
+++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.|.... ++.. +++
T Consensus 723 ~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~GAd~ilIPE~~~----~l~~l~~~i~~l~-~~~~~~~g~~~ 797 (941)
T 3opy_B 723 MEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGI----SLAQLEMDINSLK-ESFANDQGKTK 797 (941)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHTCSEEECTTTCC----CHHHHHHHHHHHH-HHHHTCTTSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEeCCCCC----CHHHHHHHHHHHH-HHHhhhhcCCC
Confidence 999999998888878889999999999999999999999999999999985 6777766664433 3332 456
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhh
Q 008424 326 NYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIET 405 (566)
Q Consensus 326 ~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~t 405 (566)
++.+|+++||...-. +
T Consensus 798 ~~~iIvvaEga~~~~----------------------------------------------------------------~ 813 (941)
T 3opy_B 798 SGRLILKSENASKVL----------------------------------------------------------------T 813 (941)
T ss_dssp CCEEEEEEGGGCSSS----------------------------------------------------------------C
T ss_pred CceEEEEeCCccCCC----------------------------------------------------------------C
Confidence 778999999864210 1
Q ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008424 406 EKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK---------------- 469 (566)
Q Consensus 406 e~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~---------------- 469 (566)
...|+++|+++++ ..|++|..+|||.||||.||+|||.+|+++|..|++++.+|.
T Consensus 814 ~~~la~~i~~~~~---------~g~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~ 884 (941)
T 3opy_B 814 TEVISTIIDDEAS---------GRFDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTD 884 (941)
T ss_dssp HHHHHHHHHHHHT---------TSSEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCH
T ss_pred HHHHHHHHHHHhC---------CCceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 2346666766642 258999999999999999999999999999999999999988
Q ss_pred ----CceEEEecCCCCCccceEEeccchHHHHh----HHHhcCCCccee
Q 008424 470 ----TGLISSVGNLAAPVEEWTVSGTALTALMD----VERRHGKFKPVI 510 (566)
Q Consensus 470 ----tG~mv~i~nl~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i 510 (566)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.
T Consensus 885 ~~~~~~~~vG~~~~~-------i~~~pi~e~~~~~~d~~~r~p~~~~w~ 926 (941)
T 3opy_B 885 EITSTAVVLGIHKSQ-------LRFTPIRQLYDFESDVPRRMRKNIFWS 926 (941)
T ss_dssp HHHTTEEEEEECC-C-------EEEEEHHHHHHTSCCTTTTCC-CCSTH
T ss_pred cCCCceEEEEEECCE-------EEEEEHHHHHhhccchhhcCCcchHHH
Confidence 89999999985 67789998764 567788887775
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.3e-67 Score=596.25 Aligned_cols=328 Identities=18% Similarity=0.211 Sum_probs=271.2
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhc-CCCEEecCcccccchhccCCccccccCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIM-KCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+++||||++|||||||||+||+++++++. +.+++||||++||+||+ ++++++|++++++.|+++||+ +|||+|.+
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 672 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS-EIGTNRSL 672 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSC-SSCCBCCC
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCc-EeccCCCC
Confidence 346899999999999999999999999864 46799999999999999 999999999999999999997 99999986
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC-CCceEEEeeccccCCCCCCCCCCCCChHHHHHHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN-LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~-~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~ 249 (566)
. .+++++++++|++++||+||+||||||+++|+.|++++.+.+ ++|+||||||||||||+++| +|||||||++++
T Consensus 673 ~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD--~TiGFdTAvn~~ 748 (989)
T 3opy_A 673 P--SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTE--YSLGSDTCLNTL 748 (989)
T ss_dssp G--GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred c--hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCc--CCCChHHHHHHH
Confidence 4 357899999999999999999999999999999999865543 47999999999999999988 899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEEcCCCCchHHHHhhhhcCCcEEEeCCchhhhhcchHhHHHHHHHHHHHHHH--cC--C
Q 008424 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAE--LG--Y 325 (566)
Q Consensus 250 se~I~ni~~Da~S~~k~~~fVevMGR~ag~LALe~aLqt~pnivlIpEe~~~~~~tL~~v~~~i~~~I~~R~~--~g--k 325 (566)
+++|++|+.+|.|++++|||||||||+||||||++|||++|++|||||+++ +++++.+.|... .+|+. +| +
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~GAd~ilIPE~~f----~l~~l~~~i~~l-~~~~~~~~g~~~ 823 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPENPI----NLQTVQEDIELL-TRTYEEDDGKNR 823 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHTCSCEECTTSCC----CHHHHHHHHHHH-HHHHTTCC---C
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcCCCEEEeCCCCC----CHHHHHHHHHHH-HHHHHHhccCCc
Confidence 999999999998877889999999999999999999999999999999985 667776666433 33432 33 5
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHhhhccccccCchhhhcchhhHHHhhhchHHHHHHHhhccCCCCCcccchhhh
Q 008424 326 NYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIET 405 (566)
Q Consensus 326 ~~gvVlIpEGl~e~ipe~~~li~el~~~l~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~G~~~ls~i~t 405 (566)
++++|+++||..+-. +
T Consensus 824 ~~~IIvvaEga~~~~----------------------------------------------------------------~ 839 (989)
T 3opy_A 824 SGKIFIHNEKASKVY----------------------------------------------------------------T 839 (989)
T ss_dssp CCEEEEEESSSCSSS----------------------------------------------------------------C
T ss_pred cceEEEEeCCCcCCC----------------------------------------------------------------C
Confidence 678999999974310 0
Q ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008424 406 EKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGK---------------- 469 (566)
Q Consensus 406 e~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~LG~~Av~li~~g~---------------- 469 (566)
.+.|++.++++ . +..|++|..+|||.||||.||+|||.+|++||..|++++.++.
T Consensus 840 ~~~la~~i~e~----~-----~~~~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~~~~~~~~~~~~~~~~~ 910 (989)
T 3opy_A 840 TDLIAAIIGEA----G-----KGRFESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHL 910 (989)
T ss_dssp HHHHHHHHHHT----T-----TTTSCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGGGSCCSBSCCCHHHHHH
T ss_pred HHHHHHHHHHh----c-----CCCceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Confidence 22344444433 2 1358999999999999999999999999999999999999866
Q ss_pred -----------------------CceEEEecCCCCCccceEEeccchHHHH----hHHHhcCCCcceee
Q 008424 470 -----------------------TGLISSVGNLAAPVEEWTVSGTALTALM----DVERRHGKFKPVIK 511 (566)
Q Consensus 470 -----------------------tG~mv~i~nl~~~~~~w~~~~vPl~~~~----~~e~~~g~~~p~i~ 511 (566)
+.+++++++. ...-.|+..|. +++.|.++..+|.+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~-------~~~~~~~~~l~~~~~d~~~r~p~~~~W~~ 972 (989)
T 3opy_A 911 RFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGS-------EVTFTPVKQLWENETHHKWRKGKNVHWEQ 972 (989)
T ss_dssp TEEEETTEEEETTTCSSCCCCGGGEEEEEEETT-------EEEEEEHHHHHHHSCTTTC----CCCCHH
T ss_pred cccccccccccccccccccCCCCcEEEEEEECC-------EEEEEEHHHhhhhccchhhCCCcChHHHh
Confidence 1235555544 35567888873 46778888888763
No 17
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=85.63 E-value=0.65 Score=46.29 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcC-------CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 177 FKQATETAVKLD-------LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 177 ~~~~~~~l~~l~-------Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
.+++.+.|++.+ .|.+|++|||||+-.|+... .....+++|+|||-
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC
Confidence 455556666655 59999999999998876543 22212679999984
No 18
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=83.49 E-value=26 Score=33.94 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=67.2
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+|||++..-.-|-...++.|+-+++++. +.++.- . .+. .+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~--------------------------------~-~~~---~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFV--------------------------------Q-SAN---GN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEE--------------------------------E-ECT---TC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE--------------------------------E-CCC---CC
Confidence 368999999888899999999999987653 333220 0 000 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.....++.+...++|++|+.+-+.+... ...+.+.+. +++||.+ |.+.....++.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~ 106 (313)
T 3m9w_A 44 EETQMSQIENMINRGVDVLVIIPYNGQVLS--NVVKEAKQE--GIKVLAY----DRMINDADIDFYISFDN 106 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSTTSCH--HHHHHHHTT--TCEEEEE----SSCCTTSCCSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHC--CCeEEEE----CCcCCCCCceEEEecCH
Confidence 445567788888999999999998765311 122333334 4677765 56655545445677764
No 19
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=76.18 E-value=3.7 Score=43.15 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC----------------CCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN----------------LKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~----------------~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+...+ -.+++|.||-|-
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 5678999999999999999999999988988888876433211 357999999775
No 20
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=75.78 E-value=6.2 Score=40.67 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
.+.++++.+.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 119 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DEL----DAYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHH----TCEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-Hhc----CCCEEEeccc
Confidence 36788999999999999999999998888888888 332 4799999998
No 21
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=75.23 E-value=59 Score=31.07 Aligned_cols=106 Identities=8% Similarity=-0.016 Sum_probs=66.0
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
.++||+++....-|=...++.|+-+.+++. +.++.-+ ..+. .+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~--------------------------------~~~~---~~ 46 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYR--------------------------------GAAQ---YD 46 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEE--------------------------------ECSS---SC
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEe--------------------------------CCCc---CC
Confidence 478999999999999999999999987653 3332210 1111 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++..+...-.++++|-
T Consensus 47 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~ 109 (305)
T 3g1w_A 47 IQEQITVLEQAIAKNPAGIAISAIDPVELT-DTI-NKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNN 109 (305)
T ss_dssp HHHHHHHHHHHHHHCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCH
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCHHHHH-HHH-HHHHHCC--CcEEEE----CCCCCCCceeEEECcCH
Confidence 455667788888899999999987765211 112 2333344 567754 55554322125677665
No 22
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=73.75 E-value=6.4 Score=41.23 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++- +. .+++|.||-|
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~-~~----~~p~i~IPTT 139 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAI-DT----GARIVIAPTI 139 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-HT----TCEEEECCSS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHH-hc----CCCEEEecCc
Confidence 4578899999999999999999999888888888873 32 5799999998
No 23
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=72.46 E-value=6.1 Score=41.03 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|- .|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY-AG 124 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS-SC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc-cc
Confidence 46889999999999999999999998888888888753 2 47899999987 53
No 24
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=71.70 E-value=2.3 Score=42.89 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=36.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--HHHHHHHHHHHH
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC--KIYAEMIGNVMI 258 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~--k~~se~I~ni~~ 258 (566)
+.|.+|++|||||+-.|+... .+. ++|+||.. -++||-|.. +-+-+.+..+..
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~-----~~~-~PilGIN~------------G~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKL-----KRC-PPIFGINT------------GRVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTC-----SSC-CCEEEEEC------------SSSCTTCCBBTTBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHh-----CCC-CcEEEECC------------CCCccccccCHHHHHHHHHHHHh
Confidence 568999999999998776442 123 89999984 277887654 334455555554
No 25
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=70.76 E-value=6.3 Score=40.06 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=31.4
Q ss_pred HcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 186 KLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 186 ~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
..+.|.+|++|||||+..+..-... ...+.++++..+|.==-||+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~-~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQ-CEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHH-CCSSCCCEEEEEECSSSCHHH
T ss_pred hcCCCEEEEEccchHHHHHHHHHhh-cccCCCCeEEEecCcCHHHHH
Confidence 4578999999999998776543221 111456788889975556665
No 26
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=70.67 E-value=8.3 Score=40.14 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKTIDND 230 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+... .-.+++|.||-|--.|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 568899999999999999999999998888888887665211 1257899999887543
No 27
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=70.24 E-value=3.1 Score=42.00 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=25.0
Q ss_pred cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 187 LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 187 l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
.+.|.+|++|||||+-.|+..... . +++|+|||-
T Consensus 74 ~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~~ 107 (307)
T 1u0t_A 74 DGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVNL 107 (307)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEEC
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEeC
Confidence 468999999999998887755322 1 468999983
No 28
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=70.01 E-value=7 Score=40.47 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 45788999999999999999999998888888888753 2 47899999884
No 29
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=69.64 E-value=9 Score=39.54 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. . .+++|.||-|-
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 45788999999999999999999998888888888753 2 57899999987
No 30
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=69.38 E-value=8.5 Score=39.88 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhc---------------CCCceEEEeecccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK---------------NLKTLVMGCPKTID 228 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~---------------~~~i~VIGVPKTID 228 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 568899999999999999999999998898888887655221 12578999998874
No 31
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=68.30 E-value=31 Score=32.81 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
.+..+|||++..-.-|=...++.|+-+.+++. +.++.-+ .+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~--- 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVA---------------------------------TSQ--- 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECS---
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------CCC---
Confidence 34579999999888888889999999887653 3333210 000
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.+...+.++.+...++|++|+.+.+..... .+.+.+.+.+ ++||.+ |.+......-.++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 112 (293)
T 3l6u_A 48 NSRISEREQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNN 112 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCH
Confidence 13345567778888999999999988765421 1223334444 567765 44444322114566654
No 32
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=66.81 E-value=7.3 Score=38.65 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=51.1
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
.+||+|+.-.+ .+.....+..+.+.+++ .+.+++.......++- ..|.. .. .
T Consensus 5 mkki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~~-----------------~~~~~-------~~-~ 56 (292)
T 2an1_A 5 FKCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHELQ-----------------LKNVP-------TG-T 56 (292)
T ss_dssp CCEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHTT-----------------CSSCC-------EE-C
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhcc-----------------ccccc-------cc-c
Confidence 36899999866 37777888888888765 3566665443322210 00110 01 1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
.+ . ...+.|.+|++|||||+-.|+... .+ .+++++|||
T Consensus 57 ~~-------~-~~~~~D~vi~~GGDGT~l~a~~~~---~~--~~~P~lGI~ 94 (292)
T 2an1_A 57 LA-------E-IGQQADLAVVVGGDGNMLGAARTL---AR--YDINVIGIN 94 (292)
T ss_dssp HH-------H-HHHHCSEEEECSCHHHHHHHHHHH---TT--SSCEEEEBC
T ss_pred hh-------h-cccCCCEEEEEcCcHHHHHHHHHh---hc--CCCCEEEEE
Confidence 11 1 124689999999999988876442 22 257899998
No 33
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=66.29 E-value=93 Score=29.69 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=58.2
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+|||++..-..|-...++.|+-+++++. +.++. +. .+. ...+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~~-~~~~ 46 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--KVDLQ--------------------------------IL-APP-GAND 46 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------EE-CCS-SSCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--CcEEE--------------------------------EE-CCC-CcCC
Confidence 468999999988999999999999987653 22221 00 000 0124
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchh--HHHHHHHHHHHhhcCCCceEEEee
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDS--NTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS--~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
.+...+.++.+...++|++|+.+-+.. .... +.+.+.| ++||.+=
T Consensus 47 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~----~~~~~~g--iPvV~~~ 93 (297)
T 3rot_A 47 VPKQVQFIESALATYPSGIATTIPSDTAFSKSL----QRANKLN--IPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHH----HHHHHHT--CCEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH----HHHHHCC--CCEEEEc
Confidence 556667888888999999999887655 2222 2333334 5677653
No 34
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=64.93 E-value=14 Score=38.29 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh-------------cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS-------------KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~-------------~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.... .+-.+++|.||-|-
T Consensus 77 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999999888888888764211 01257899999877
No 35
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=64.81 E-value=10 Score=38.89 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.++ |.+|-+||--.++.|..+|--+. ..+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~---rgip~i~IPTTl 121 (343)
T 3clh_A 67 NFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYF---RGIDFINIPTTL 121 (343)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBT---TCCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhc---cCCCEEEeCCch
Confidence 56889999999999999 99999999888888877764332 257899999885
No 36
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=64.67 E-value=34 Score=32.43 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=65.4
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
.+|||++..-.-|-...++.|+-+.+++. +.++.-+ ++. .+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~~ 57 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLT---------------------------------STN---NNP 57 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TCH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---CCh
Confidence 79999999988899999999999987653 3333211 001 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHH-HHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNT-NACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t-~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+...+.++.+...++|++|+.+.+.+.. ....+.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 58 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 121 (298)
T 3tb6_A 58 DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAA-PSFTLDD 121 (298)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSS-CEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCC-CEEEeCc
Confidence 4556778888899999999999875321 1111223344444 567754 555543322 3566554
No 37
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=64.13 E-value=3.9 Score=42.80 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=67.3
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCcc----ccccCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFD----MICSGR 168 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~----~LGSsR 168 (566)
.+++|+||.= -..|.....+..+++.|.+. +.+||-= .++ .+.+. +.+.-.+. -..+.+
T Consensus 37 ~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~~--~~~V~ve---------~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 99 (365)
T 3pfn_A 37 SPKSVLVIKK-MRDASLLQPFKELCTHLMEE--NMIVYVE---------KKV----LEDPA-IASDESFGAVKKKFCTFR 99 (365)
T ss_dssp CCCEEEEEEC-TTCGGGHHHHHHHHHHHHHT--SCEEEEE---------HHH----HHSHH-HHHCSTTHHHHHHCEEEC
T ss_pred CCCEEEEEec-CCCHHHHHHHHHHHHHHHHC--CCEEEEe---------hHH----hhhhc-cccccccccccccccccc
Confidence 5689999975 35678888999999998763 4555421 110 00000 00000000 000001
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHH--
Q 008424 169 DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTAC-- 246 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~-- 246 (566)
..+.. ...+.|.+|++|||||+-.|+.+.. +..++|+||=. -++||=|-.
T Consensus 100 ~~~~~-----------~~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~------------G~LGFLt~~~~ 151 (365)
T 3pfn_A 100 EDYDD-----------ISNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL------------GSLGFLTPFSF 151 (365)
T ss_dssp TTTCC-----------CTTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES------------SSCTTTCCEES
T ss_pred cChhh-----------cccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC------------CCCccceeecH
Confidence 11100 0257899999999999988876532 34678999952 277886643
Q ss_pred HHHHHHHHHHH
Q 008424 247 KIYAEMIGNVM 257 (566)
Q Consensus 247 k~~se~I~ni~ 257 (566)
+-+.+.+..+.
T Consensus 152 ~~~~~~l~~vl 162 (365)
T 3pfn_A 152 ENFQSQVTQVI 162 (365)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 23445555554
No 38
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=63.93 E-value=18 Score=34.71 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=65.1
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
.+..+|||++..-.-|=...++.|+-+.+++. +.++.-+. ..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------ 47 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLAN------------------------TA------------ 47 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------
Confidence 34579999999888888889999999887653 33332110 00
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.+.....++.+...++|++|+.+.+.... +.+.+.+. +++||. +|++.....+ .++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~--~iPvV~----~~~~~~~~~~-~~V~~D~ 109 (291)
T 3egc_A 48 EDIVREREAVGQFFERRVDGLILAPSEGEHD----YLRTELPK--TFPIVA----VNRELRIPGC-GAVLSEN 109 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCT--TSCEEE----ESSCCCCTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhcc--CCCEEE----EecccCCCCC-CEEEECc
Confidence 1234556778888999999999999876222 22333333 467774 4555553332 4555553
No 39
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=63.73 E-value=9.9 Score=39.02 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+..+++.+.+++.++ |.+|-|||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 56889999999999999 9999999988888888777533 22 57899999776
No 40
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=63.08 E-value=8.5 Score=39.81 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh-------------cCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS-------------KNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~-------------~~~~i~VIGVPKTIDND 230 (566)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+.. ....+++|.||-|--.+
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 56889999999999999999999999889888888765432 00357899999875444
No 41
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=62.83 E-value=12 Score=39.03 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHcC---CCEEEEeCCchhHHHHHHHHHHHhhc-------------CCCceEEEeecccc
Q 008424 173 TPEQFKQATETAVKLD---LDGLVVIGGDDSNTNACLLAEHFRSK-------------NLKTLVMGCPKTID 228 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~---Id~LviIGGddS~t~A~~Lae~~~~~-------------~~~i~VIGVPKTID 228 (566)
+.+..+++++.+++.+ .|.+|-|||--+++.|..++-.+... +-.+++|.||-|--
T Consensus 91 t~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 91 TTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp BHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 5688999999999998 99999999998898888887654211 12478999997753
No 42
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=62.42 E-value=3 Score=41.03 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=25.3
Q ss_pred cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 187 LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 187 l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
.+.|.+|++|||||+-.|+... . + +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~---~--~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA---A--D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB---C--T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHh---C--C-CCCEEEEE
Confidence 4789999999999988876432 1 2 67999998
No 43
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=62.12 E-value=44 Score=31.35 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=61.4
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+||+++..-..|-...++.|+-+.+++. +.++. +..+. .+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~ 44 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--GYQLL---------------------------------LGYSD---YS 44 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--SCEEC---------------------------------CEECT---TC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--CCEEE---------------------------------EEcCC---CC
Confidence 368999998877788888889988887642 22210 10111 12
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.....++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 45 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 104 (275)
T 3d8u_A 45 IEQEEKLLSTFLESRPAGVVLFGSEHSQRTH----QLLEASN--TPVLEI----AELSSKASY-LNIGVDH 104 (275)
T ss_dssp HHHHHHHHHHHHTSCCCCEEEESSCCCHHHH----HHHHHHT--CCEEEE----SSSCSSSSS-EEECBCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE----eeccCCCCC-CEEEECh
Confidence 3445567788888999999999876543222 2333334 567765 444332222 4667664
No 44
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=62.10 E-value=14 Score=38.71 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh-------------cCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS-------------KNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~-------------~~~~i~VIGVPKTI 227 (566)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+.. ....+++|.||-|-
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa 153 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTIS 153 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999999889888888764310 01357899999774
No 45
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=61.98 E-value=91 Score=29.48 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCCcEEEEEeCCC-CCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 92 DEKLKIGVVLSGG-QAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 92 ~~~~~IgIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+..+|||++..- ..|=...++.|+-+.+++.. +..+.-+ .....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-g~~~~~~---------------------------------~~~~~ 51 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-DFNISAN---------------------------------ITHYD 51 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-GGCEEEE---------------------------------EEEEC
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-hCCeEEE---------------------------------EEcCC
Confidence 3557999999987 88999999999999876531 1111100 00000
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
-.+++.....++.+...++|++|+.+-+..... . +.+.+.+.+ ++||.+ |+++.....-.++++|-
T Consensus 52 ~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~-~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 117 (304)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK-G-FTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNS 117 (304)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH-H-HHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH-H-HHHHHHHCC--CeEEEE----eCCCCCCCceEEEecCh
Confidence 124556677888899999999999998754211 1 122333334 567754 45544321114556553
No 46
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=61.53 E-value=3.4 Score=43.54 Aligned_cols=36 Identities=6% Similarity=0.017 Sum_probs=26.1
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEE
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLY 130 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~ 130 (566)
+++|+|+.==+ -+.....+..+.+.|.+..++.+|+
T Consensus 41 ~k~V~II~n~~-~~~~~~~~~~l~~~L~~~~~gi~V~ 76 (388)
T 3afo_A 41 LQNVYITKKPW-TPSTREAMVEFITHLHESYPEVNVI 76 (388)
T ss_dssp CCEEEEEECTT-CHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CcEEEEEEeCC-CHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 57899998744 3666777788888887766666654
No 47
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=60.23 E-value=7.6 Score=39.44 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 185 VKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 185 ~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
...+.|.+|++|||||...+..- +.+.+.++++.+||.==-||+.
T Consensus 77 ~~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 77 MHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp TTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH
T ss_pred hhcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHH
Confidence 34578999999999998776533 3233567899999986677776
No 48
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=59.98 E-value=7.9 Score=39.62 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
+.+..+++ +.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|.-.|
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~~----~~p~i~IPTT~~tg 125 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FLR----KLPFISVPTSTSND 125 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HHH----TCCEEEEESCCSSG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hhc----CCCEEEecCcccCC
Confidence 45678888 888889999999999988888888887 443 47899999887654
No 49
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=59.82 E-value=72 Score=30.05 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
.+..+|||++..-.-|-...++.|+-+.+++. +.++.-+. . .
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~---------~--- 46 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLFD------------------------A---------N--- 46 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEEE------------------------C---------T---
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------C---------C---
Confidence 34579999998888888889999998887543 33332110 0 0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
.+.+...+.++.+...++|++|+.+.+. . ...+.+.+. +++||.+ |.++....+ .++++|
T Consensus 47 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~--~iPvV~i----~~~~~~~~~-~~V~~D 106 (276)
T 3jy6_A 47 ADIEREKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQ--QMPVVSV----DREMDACPW-PQVVTD 106 (276)
T ss_dssp TCHHHHHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTT--SSCEEEE----SCCCTTCSS-CEEECC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHC--CCCEEEE----ecccCCCCC-CEEEEC
Confidence 1234456778888899999999999887 2 222344444 4567755 555543322 455655
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.39 E-value=28 Score=32.70 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=64.5
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+|||++..-.-|=...++.|+-+.+++. +.++.-+ .+. .+
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 43 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIA---------------------------------SSD---DQ 43 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---CC
Confidence 368999999988888999999999887653 3333210 000 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.....++.+...++|++|+.+.+.... . ..+.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~-~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~d~ 104 (272)
T 3o74_A 44 PDSERQLQQLFRARRCDALFVASCLPPED--D-SYRELQDKG--LPVIA----IDRRLDPAHF-CSVISDD 104 (272)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC--C-HHHHHHHTT--CCEEE----ESSCCCTTTC-EEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccH--H-HHHHHHHcC--CCEEE----EccCCCcccc-CEEEEch
Confidence 34556778888899999999998773311 1 123334444 56764 4666554332 4555553
No 51
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=59.26 E-value=15 Score=38.30 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcC--C---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLD--L---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~--I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++.+.+.+.+ + |.+|-+||--.++.|..+|--+. + .+++|.||-|.
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 141 (393)
T 1sg6_A 85 SRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYM-R--GVRYVQVPTTL 141 (393)
T ss_dssp SHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGG-G--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhc-C--CCCEEEECCch
Confidence 5578999999999999 9 99999999888888777765332 3 47899999764
No 52
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=58.98 E-value=35 Score=32.61 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=59.4
Q ss_pred CCCcEEEEEeCCCCC--chhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCC
Q 008424 92 DEKLKIGVVLSGGQA--PGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRD 169 (566)
Q Consensus 92 ~~~~~IgIv~sGG~a--PG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~ 169 (566)
.+..+|||++..-.- |=...++.|+-+.+++ .+.++.-+ +...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~------------------------~~~~--------- 50 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--TQYHLVVT------------------------PHIH--------- 50 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--SSCEEEEC------------------------CBSS---------
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--cCCEEEEe------------------------cCCc---------
Confidence 345789999987554 8888888898888643 23332200 0001
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 170 KIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 170 k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+++....+.+.+...++|++|+.+.+.+.... +.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 51 ---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~----i~~~~~~~~~-~~V~~D~ 111 (288)
T 3gv0_A 51 ---AKDSMVPIRYILETGSADGVIISKIEPNDPRV----RFMTERN--MPFVT----HGRSDMGIEH-AFHDFDN 111 (288)
T ss_dssp ---GGGTTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHTT--CCEEE----ESCCCSSCCC-EEEEECH
T ss_pred ---chhHHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhCC--CCEEE----ECCcCCCCCC-cEEEeCc
Confidence 01112345566778999999999876543222 3334444 56774 4555543332 4555553
No 53
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=57.66 E-value=20 Score=34.24 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=57.5
Q ss_pred CCCEEEEEccChhhhcCCC---------EEecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Q 008424 125 KGSVLYGFRGGPAGIMKCK---------YVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVI 195 (566)
Q Consensus 125 ~~~~v~Gf~~G~~GLl~~~---------~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviI 195 (566)
....++|.=+|..=|++.. +=-++++.++.|...| .++-....| +..+++++++.+.+++.+-++++
T Consensus 21 ~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~--~i~~~p~eK--D~TD~e~Al~~a~~~~~~~I~i~ 96 (212)
T 3l8m_A 21 KHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI--EINPYNSEK--DDTDLALGIDQAVKRGYRNIDVY 96 (212)
T ss_dssp TTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT--BCCCCC-----CBCHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC--cEEEECCcC--CCCHHHHHHHHHHHCCCCEEEEE
Confidence 4568889998988777643 2234445555666665 244332233 44679999999999999999999
Q ss_pred CCch-----hHHHHHHHHHH-HhhcCCCc
Q 008424 196 GGDD-----SNTNACLLAEH-FRSKNLKT 218 (566)
Q Consensus 196 GGdd-----S~t~A~~Lae~-~~~~~~~i 218 (566)
|+-| ++.+...|..+ +.+.+.++
T Consensus 97 Ga~GgR~DH~lani~ll~~~~~~~~~~~i 125 (212)
T 3l8m_A 97 GATGGRLDHFMGALQILEKPEYAKMNINI 125 (212)
T ss_dssp SCSSSCHHHHHHHHHHHTCHHHHTTTCEE
T ss_pred cCCCCchhHHHHHHHHHHhhhhhccCceE
Confidence 9976 45555555532 23344433
No 54
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=56.99 E-value=1.2e+02 Score=28.53 Aligned_cols=105 Identities=17% Similarity=0.253 Sum_probs=65.7
Q ss_pred CCCcEEEEEeCC-----CCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCcccccc
Q 008424 92 DEKLKIGVVLSG-----GQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICS 166 (566)
Q Consensus 92 ~~~~~IgIv~sG-----G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS 166 (566)
.+..+|||++.. -.-|-...++.|+-+.+++. +.++. +..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~ 50 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALY---------------------------------MST 50 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEE---------------------------------ECC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEe
Confidence 345799999998 78888999999999987653 33321 000
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 167 GRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 167 sR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+. .+.+.....++.+...++|++|+.+.+.+... .+.+.+.+ ++||.+ |++.....--.++++|-
T Consensus 51 ~~---~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 115 (292)
T 3k4h_A 51 GE---TEEEIFNGVVKMVQGRQIGGIILLYSRENDRI----IQYLHEQN--FPFVLI----GKPYDRKDEITYVDNDN 115 (292)
T ss_dssp CC---SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHH----HHHHHHTT--CCEEEE----SCCSSCTTTSCEEECCH
T ss_pred CC---CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHHCC--CCEEEE----CCCCCCCCCCCEEEECc
Confidence 00 12344567888899999999999998765322 23344444 567754 55554332114565554
No 55
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.70 E-value=57 Score=30.84 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+|||++..-.-|-...++.|+-+++++. +.++.- ..+. .
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~---~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIA---------------------------------LDAG---R 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEE---------------------------------EECT---T
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE---------------------------------EcCC---C
Confidence 3479999999888888888999999987653 222210 0000 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.+.....++.+...++|++|+.+.+.+.... ..+.+.+.+ ++||.+ |.+..... .++++|-
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~----~~~~~~~~--~~V~~D~ 107 (291)
T 3l49_A 46 NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--WLQKINDAG--IPLFTV----DTATPHAI--NNTTSNN 107 (291)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--HHHHHHHTT--CCEEEE----SCCCTTCS--EEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--HHHHHHHCC--CcEEEe----cCCCCCcC--ceEecCh
Confidence 23455677888889999999999887543222 223444444 567765 34433222 4666654
No 56
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=54.25 E-value=18 Score=37.12 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|--+. ..+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~~---rgip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYL---RGVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHBT---TCCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHhc---cCCCEEEecCcH
Confidence 45788999999999998 89999999888888887775322 257899999774
No 57
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=54.03 E-value=18 Score=37.94 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|--+ ...+++|.||-|.
T Consensus 105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~---~rgip~I~IPTTl 159 (390)
T 3okf_A 105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY---QRGVDFIQIPTTL 159 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB---TTCCEEEEEECSH
T ss_pred hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh---cCCCCEEEeCCCC
Confidence 56789999999999999 6999999988888887776432 2257899999886
No 58
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=53.03 E-value=1.4e+02 Score=27.59 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=62.5
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
.+|||++..-..|-...++.|+-+.+++. +.++.- -..... .+.
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~---------------------------------~~~~~~-~~~ 44 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--GVTLLH---------------------------------RSTKDD-GDI 44 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--TCEEEE---------------------------------CCCSST-TCH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE---------------------------------ECCCCC-CCH
Confidence 37999999989999999999999987653 222210 000001 134
Q ss_pred HHHHHHHHHHHHcC-CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 175 EQFKQATETAVKLD-LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 175 e~~~~~~~~l~~l~-Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.....++.+.+.+ +|++|+.+-+..... . ..+.+.+.+ ++||.+ |.+........++++|-
T Consensus 45 ~~~~~~i~~l~~~~~vdgii~~~~~~~~~~-~-~~~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~ 107 (276)
T 3ksm_A 45 AGQIQILSYHLSQAPPDALILAPNSAEDLT-P-SVAQYRARN--IPVLVV----DSDLAGDAHQGLVATDN 107 (276)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCSSTTTTH-H-HHHHHHHTT--CCEEEE----SSCCSSSCSSEEEECCH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCHHHHH-H-HHHHHHHCC--CcEEEE----ecCCCCCCcceEEccCH
Confidence 45566777777888 999999986533211 1 123333444 567765 44444333223455553
No 59
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=52.62 E-value=44 Score=31.82 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=49.9
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEc---cChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFR---GGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~---~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
+||||+.||.-. .+..+++.++....+.+|.++. ....|+ .+...=|-..+--...++
T Consensus 1 ~riaVl~SG~Gs-----~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~--------------~~A~~~gIp~~~~~~~~~ 61 (209)
T 1meo_A 1 ARVAVLISGTGS-----NLQALIDSTREPNSSAQIDIVISNKAAVAGL--------------DKAERAGIPTRVINHKLY 61 (209)
T ss_dssp CEEEEEESSSCT-----THHHHHHHHHSTTCSCEEEEEEESSTTCHHH--------------HHHHHTTCCEEECCGGGS
T ss_pred CeEEEEEECCch-----HHHHHHHHHhcCCCCcEEEEEEeCCCChHHH--------------HHHHHcCCCEEEECcccc
Confidence 489999999763 3555556554333356777665 222332 111222322221122233
Q ss_pred CCHHHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHH
Q 008424 172 ETPEQF-KQATETAVKLDLDGLVVIGGDDSNTNACLL 207 (566)
Q Consensus 172 ~~~e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~L 207 (566)
.+.+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 97 (209)
T 1meo_A 62 KNRVEFDSAIDLVLEEFSIDIVCLAG-FMRILSGPFV 97 (209)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEES-CCSCCCHHHH
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEcc-hhhhCCHHHH
Confidence 455555 4578889999999888776 3433333334
No 60
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=52.28 E-value=63 Score=31.66 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred CCcEEEEEeCC--CCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 93 EKLKIGVVLSG--GQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 93 ~~~~IgIv~sG--G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
+..+||+++.. -.-|=...++.|+-+.+++. +.++.- ..+.
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~-- 102 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLLL---------------------------------ADGK-- 102 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--TCEEEE---------------------------------EECT--
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC--
Confidence 45799999988 67788888999999887653 333220 0000
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
.+.+...+.++.+...++|++|+.+.+.+... +.+.+.+.+ ++||.+ |.+.....+ .+++.|
T Consensus 103 -~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~D 164 (338)
T 3dbi_A 103 -HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSS-HSVWCD 164 (338)
T ss_dssp -TSHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGG-GEECBC
T ss_pred -CChHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCC-CEEEEC
Confidence 12344456778888999999999987765432 333444444 566644 555543322 345555
No 61
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=52.11 E-value=13 Score=38.42 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+.+.++++.+.+++ +.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 80 ~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 127 (376)
T 1kq3_A 80 SDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVA-YKL----KKPVVIVPTI 127 (376)
T ss_dssp BHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHH-HHT----TCCEEEEESS
T ss_pred CHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHH-Hhc----CCCEEEecCc
Confidence 34678888888888 999999999998888888888 332 5789999988
No 62
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=51.20 E-value=23 Score=36.81 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWL-R--GVSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGG-G--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhc-c--CCcEEEECCCC
Confidence 45778999999998875 99999999988888887775432 3 47899999885
No 63
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=50.79 E-value=15 Score=39.31 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
.+.++++.+.+++ +.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 132 ~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA-~~~----giP~I~IPTT 178 (450)
T 1ta9_A 132 LVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIA-HSM----NLPSIICPTT 178 (450)
T ss_dssp HHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHH-HHT----TCCEEEEESS
T ss_pred HHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHH-Hhc----CCCEEEEeCC
Confidence 4667888888888 999999999998899888888 332 5789999998
No 64
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=50.24 E-value=87 Score=29.35 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=55.5
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+|||++..-.-|=...++.|+-+.+++. +.++.-+ .+. .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~ 48 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--GYQVLIG---------------------------------NSD---N 48 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--TCCEEEE---------------------------------ECT---T
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---C
Confidence 4478999998888888888999998887653 3332210 000 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHH-HHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE-HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae-~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.+.....++.+...++|++|+.+.+. .. .+ .+.+.+ ++||. +|++..... ++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~~dgiIi~~~~~--~~----~~~~l~~~~--iPvV~----~~~~~~~~~---~V~~D~ 106 (277)
T 3e61_A 49 DIKKAQGYLATFVSHNCTGMISTAFNE--NI----IENTLTDHH--IPFVF----IDRINNEHN---GISTNH 106 (277)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECGGGH--HH----HHHHHHHC---CCEEE----GGGCC------------H
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCh--HH----HHHHHHcCC--CCEEE----EeccCCCCC---eEEech
Confidence 234556778888999999999998332 11 23 344444 56775 455554332 566553
No 65
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=49.55 E-value=1e+02 Score=30.28 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-.-|=...++.|+-+.+++ .+.+++- ..+. .
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~---------------------------------~~~~---~ 108 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLED--TELQPVV---------------------------------GVTD---Y 108 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHTS--SSSEEEE---------------------------------EECT---T
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--CCCEEEE---------------------------------EeCC---C
Confidence 457899999887788888889999888643 2333321 0000 0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+.+...+.++.+...++|++|+.+-+.+.. +.+.+.+.+ ++||.+
T Consensus 109 ~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 109 LPEKEEKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 234556778888899999999998765542 223344445 556655
No 66
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=49.02 E-value=13 Score=37.11 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=31.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 188 DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 188 ~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+.|.+|++|||||...+. ..+...+.++++-.||.==-||+.
T Consensus 63 ~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 63 KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHH
T ss_pred CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHH
Confidence 889999999999987653 233333456889999987778876
No 67
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=47.22 E-value=27 Score=36.03 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHcCC---CEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccc
Q 008424 173 TPEQFKQATETAVKLDL---DGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTI 227 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~I---d~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTI 227 (566)
+.+.++++.+.+.+.++ |.+|-+||--.++.|..+|--+. + .+++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMF-R--GIALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHhc-C--CCCEEEECCch
Confidence 56788999999999995 99999999888888777765332 2 47999999885
No 68
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=46.97 E-value=1.3e+02 Score=28.56 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=57.0
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
+.+||+++..-.-|=...++.|+-+.+++. +.++. +. ++ .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~----~~ 42 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVI--------------------------------KI-AV----PD 42 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--TEEEE--------------------------------EE-EC----CS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--CCEEE--------------------------------Ee-CC----CC
Confidence 478999999888888889999999887654 22111 11 11 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
.+.....++.+...++|++|+.+-+..... .+.+.+.+.+ ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 43 GEKTLNAIDSLAASGAKGFVICTPDPKLGS--AIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGHH--HHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchhhH--HHHHHHHHCC--CcEEEe
Confidence 455566788888899999999997765322 1223334444 577754
No 69
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=45.28 E-value=56 Score=31.06 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=50.5
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
++||+|++||... ....+++.+.+..-+.+|.++.- ++ .+..+..+...=|-...--.+.++.+
T Consensus 3 m~ki~vl~sG~g~-----~~~~~l~~l~~~~l~~~I~~Vit-------~~----~~~~v~~~A~~~gIp~~~~~~~~~~~ 66 (212)
T 3av3_A 3 MKRLAVFASGSGT-----NFQAIVDAAKRGDLPARVALLVC-------DR----PGAKVIERAARENVPAFVFSPKDYPS 66 (212)
T ss_dssp CEEEEEECCSSCH-----HHHHHHHHHHTTCCCEEEEEEEE-------SS----TTCHHHHHHHHTTCCEEECCGGGSSS
T ss_pred CcEEEEEEECCcH-----HHHHHHHHHHhCCCCCeEEEEEe-------CC----CCcHHHHHHHHcCCCEEEeCcccccc
Confidence 3799999999843 23445555543222456655542 10 00112222222233332222233445
Q ss_pred HHHHH-HHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 174 PEQFK-QATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 174 ~e~~~-~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
.+.++ ...+.+++++.|.+|+.| .+-.-....|.
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~ 101 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALAG-YMRLIGPTLLS 101 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEch-hhhhCCHHHHh
Confidence 55554 568889999999777765 55444444443
No 70
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=43.47 E-value=1.2e+02 Score=28.62 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-..|-...++.|+-+++++. +.++. +..+. .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 48 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--GYRIL---------------------------------LCNTE---S 48 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4478999998777788888888888887542 22221 00000 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.+.....++.+...++|++|+.+.+.+.. .+ +.+. . +++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~-~~V~~D~ 108 (285)
T 3c3k_A 49 DLARSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTV-SSVSIDD 108 (285)
T ss_dssp CHHHHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSS-CEEECCH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 233445567788889999999998765432 22 3333 3 4677765 443332222 3566553
No 71
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=42.59 E-value=2.2e+02 Score=26.63 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=52.8
Q ss_pred CCcEEEEEeCC--CCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 93 EKLKIGVVLSG--GQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 93 ~~~~IgIv~sG--G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
+..+||+++.. -..|-...++.|+-+++++. +.++. +..+.
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~-- 60 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------------------------LADGK-- 60 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCT--
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC--
Confidence 45789999977 67788888999998887542 22211 00100
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhh-cCCCceEEEee
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS-KNLKTLVMGCP 224 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~-~~~~i~VIGVP 224 (566)
.+.+.....++.+...++|++|+.+.+.+.. .+ +.+.+ .+ ++||.+-
T Consensus 61 -~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~~ 108 (296)
T 3brq_A 61 -HSAEEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVLN 108 (296)
T ss_dssp -TSHHHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEES
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEEc
Confidence 1234455667778889999999998865422 22 33344 34 5677653
No 72
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=42.36 E-value=20 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 201 NTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 201 ~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
......|.+.+++.+...-|||.|++.||...
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 44566777777777778889999999988764
No 73
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=42.06 E-value=91 Score=29.82 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=51.2
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
++||+|+.||+ | +| ...++++.+.-.-..+|.++.- ++ .+..+..+...=|-...--.+.++.+
T Consensus 2 m~riavl~Sg~---G-sn-l~ali~~~~~~~l~~eI~~Vis-------n~----~~a~v~~~A~~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFASGS---G-TN-AEAIIQSQKAGQLPCEVALLIT-------DK----PGAKVVERVKVHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECCTT---C-HH-HHHHHHHHHTTCCSSEEEEEEE-------SC----SSSHHHHHHHTTTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCC---c-hH-HHHHHHHHHcCCCCcEEEEEEE-------CC----CCcHHHHHHHHcCCCEEEeChhhcCc
Confidence 37999999995 3 33 6667776543322346655542 11 00112222222232221112223444
Q ss_pred HHHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHHHH
Q 008424 174 PEQF-KQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209 (566)
Q Consensus 174 ~e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae 209 (566)
.+.+ +.+++.+++++.|.+|+.| .+-.-....|..
T Consensus 66 r~~~d~~~~~~l~~~~~Dliv~ag-y~~Il~~~~l~~ 101 (211)
T 3p9x_A 66 KEAYEIEVVQQLKEKQIDFVVLAG-YMRLVGPTLLGA 101 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEeC-chhhcCHHHHhh
Confidence 5554 4678899999999888776 444444445543
No 74
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=40.03 E-value=1.4e+02 Score=30.01 Aligned_cols=120 Identities=8% Similarity=0.022 Sum_probs=59.6
Q ss_pred ChhHHHhhCCcccCC--CeEEEecCCCCccCCCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhh
Q 008424 62 NPDEIAKLFPNLFGQ--PSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGI 139 (566)
Q Consensus 62 ~~~~i~~~fp~~~~~--~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL 139 (566)
+.+++++.|..+... --+++... ..++||+|+.||. ++| +..++++.+.-.-..+|.++.-
T Consensus 78 ~~~~L~~~l~~la~~l~m~~~l~~~-------~~~~ri~vl~Sg~----g~n-l~~ll~~~~~g~l~~~I~~Vis----- 140 (302)
T 3o1l_A 78 DLDGFREAFTPIAEEFSMDWRITDS-------AQKKRVVLMASRE----SHC-LADLLHRWHSDELDCDIACVIS----- 140 (302)
T ss_dssp CHHHHHHHHHHHHHHHTCEEEEEET-------TSCCEEEEEECSC----CHH-HHHHHHHHHTTCSCSEEEEEEE-----
T ss_pred CHHHHHHHHHHHHHHhCCeeeeccc-------CCCcEEEEEEeCC----chh-HHHHHHHHHCCCCCcEEEEEEE-----
Confidence 466777666433221 11333332 2358999999998 233 5556665443222346655442
Q ss_pred cCCCEEecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHH
Q 008424 140 MKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLL 207 (566)
Q Consensus 140 l~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~L 207 (566)
+ ..++..+...=|-...--...+...++.-+++++.+++++.|.+|+.| .+-.-....|
T Consensus 141 --n------~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlag-ym~IL~~~~l 199 (302)
T 3o1l_A 141 --N------HQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLAR-YMQILPPQLC 199 (302)
T ss_dssp --S------SSTTHHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESS-CCSCCCTTHH
T ss_pred --C------cHHHHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhH-hhhhcCHHHH
Confidence 1 111222222223222221122222234445788999999999777765 4433333334
No 75
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=39.47 E-value=11 Score=27.79 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.4
Q ss_pred HHHhhhchHHHHHHHhhc
Q 008424 374 LQLFEFLPQAIQEQLMLE 391 (566)
Q Consensus 374 ~~lf~~lp~~i~~ql~~~ 391 (566)
.++|+.||..||++|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 378999999999998753
No 76
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=38.83 E-value=98 Score=29.41 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=51.7
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
+||+|+.||.-. ....++++++....+.+|.++.--. .+.....+...=|-..+--.+.++.+.
T Consensus 1 ~ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~-----------~~~~~~~~A~~~gIp~~~~~~~~~~~r 64 (212)
T 1jkx_A 1 MNIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNK-----------ADAFGLERARQAGIATHTLIASAFDSR 64 (212)
T ss_dssp CEEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESC-----------TTCHHHHHHHHTTCEEEECCGGGCSSH
T ss_pred CEEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCC-----------CchHHHHHHHHcCCcEEEeCcccccch
Confidence 489999999762 2666777665443346776665211 000111222222333332222334444
Q ss_pred HHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 175 EQF-KQATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 175 e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
+.+ +.+.+.+++++.|.+|+.| .+-.-....|.
T Consensus 65 ~~~~~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~ 98 (212)
T 1jkx_A 65 EAYDRELIHEIDMYAPDVVVLAG-FMRILSPAFVS 98 (212)
T ss_dssp HHHHHHHHHHHGGGCCSEEEESS-CCSCCCHHHHH
T ss_pred hhccHHHHHHHHhcCCCEEEEeC-hhhhCCHHHHh
Confidence 444 4567888999999777764 55443444443
No 77
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=38.43 E-value=2e+02 Score=27.15 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=59.2
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-..|=...++.|+-+.+++. +.++. +..+....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~~~- 50 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--HRHVV---------------------------------VATGCGES- 50 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCCSSS-
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCCCch-
Confidence 4468999998777777888888988887542 23221 00001111
Q ss_pred CHHHHHH---HHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 173 TPEQFKQ---ATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 173 ~~e~~~~---~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.... .++.+...++|++++.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 51 --~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 112 (290)
T 2rgy_A 51 --TPREQALEAVRFLIGRDCDGVVVISHDLHDEDL----DELHRMH--PKMVFL----NRAFDALPD-ASFCPDH 112 (290)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHH----HHHHHHC--SSEEEE----SSCCTTSGG-GEECCCH
T ss_pred --hhhhhHHHHHHHHHhcCccEEEEecCCCCHHHH----HHHhhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 12234 6777888999999999877652222 2333334 567765 333332221 3566553
No 78
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=38.39 E-value=1.2e+02 Score=29.32 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=52.0
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
..++||+|+.||... ....+++.+.+...+.+|.++.--.. +..+..+...=|-...--.+.++
T Consensus 20 ~~~~rI~~l~SG~g~-----~~~~~l~~l~~~~~~~~I~~Vvt~~~-----------~~~~~~~A~~~gIp~~~~~~~~~ 83 (229)
T 3auf_A 20 GHMIRIGVLISGSGT-----NLQAILDGCREGRIPGRVAVVISDRA-----------DAYGLERARRAGVDALHMDPAAY 83 (229)
T ss_dssp TTCEEEEEEESSCCH-----HHHHHHHHHHTTSSSEEEEEEEESST-----------TCHHHHHHHHTTCEEEECCGGGS
T ss_pred CCCcEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEcCCC-----------chHHHHHHHHcCCCEEEECcccc
Confidence 445799999999852 24455665543322456666542100 01111222222333322222334
Q ss_pred CCHHHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 172 ETPEQF-KQATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 172 ~~~e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
.+.+.+ +.+++.+++++.|.+|+.| .+-.-....|.
T Consensus 84 ~~r~~~~~~~~~~l~~~~~Dliv~ag-y~~IL~~~~l~ 120 (229)
T 3auf_A 84 PSRTAFDAALAERLQAYGVDLVCLAG-YMRLVRGPMLT 120 (229)
T ss_dssp SSHHHHHHHHHHHHHHTTCSEEEESS-CCSCCCHHHHH
T ss_pred cchhhccHHHHHHHHhcCCCEEEEcC-hhHhCCHHHHh
Confidence 444555 4568889999999777765 54444444443
No 79
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=38.26 E-value=2.3e+02 Score=28.92 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL---DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l---~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+.. +.+.+||-.
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlT 121 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLV 121 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEE
Confidence 677877777777764 7999999999999976555445544 344556654
No 80
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=37.81 E-value=38 Score=32.62 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=58.8
Q ss_pred CEEEEEccChhhhcCCC---------EEecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Q 008424 127 SVLYGFRGGPAGIMKCK---------YVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGG 197 (566)
Q Consensus 127 ~~v~Gf~~G~~GLl~~~---------~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGG 197 (566)
..++|.=+|..=|++.. +=-++++.++.|...|- .++-....| +..++++|++.+.+++.+-++++|+
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~Ga 102 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAP-ALHVYQAEK--DQTDLDLALDWALEKQPDIIQIFGI 102 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCT-TCEEECCCS--SSCHHHHHHHHHHHHCCSEEEEESC
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCC-eEEEeCCCC--CCCHHHHHHHHHHHcCCCEEEEEcC
Confidence 56788888887776532 22344455556666543 344332333 4467999999999999999999999
Q ss_pred ch-----hHHHHHHHHHHHhhcCCCceEE
Q 008424 198 DD-----SNTNACLLAEHFRSKNLKTLVM 221 (566)
Q Consensus 198 dd-----S~t~A~~Lae~~~~~~~~i~VI 221 (566)
-| ++.+...|..+++ .+.++.++
T Consensus 103 ~GgR~DH~lani~ll~~~~~-~~~~i~li 130 (222)
T 3lm8_A 103 TGGRADHFLGNIQLLYKGVK-TNIKIRLI 130 (222)
T ss_dssp CCSCHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred CCCchhHHHHHHHHHHHHHh-cCCcEEEE
Confidence 76 5667777776643 34443333
No 81
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=36.38 E-value=1.4e+02 Score=28.30 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+|||++..-.-|-...++.|+-+.+++. +.++.-+. ..+ ..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~~------------------------~~~----------~~ 47 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--GVNLRVLE------------------------AGG----------YP 47 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--TCEEEEEE------------------------CSS----------TT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCeEEEEc------------------------CCC----------CC
Confidence 4579999999888888999999999987654 22221100 011 01
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchh
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDS 200 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS 200 (566)
+.+...+.++.+...++|++|+.+.+..
T Consensus 48 ~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 48 NKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3455567788888899999999987755
No 82
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=36.28 E-value=1.6e+02 Score=27.45 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEc----------------cChhhhcCCCEEecCcccccchh
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFR----------------GGPAGIMKCKYVELTSNYIYPYR 156 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~----------------~G~~GLl~~~~~eLt~~~v~~~~ 156 (566)
+..+|||++..-.-|=...++.|+-+.+++. +.++.-+. .++.|++ --...+.+.+..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI--~~~~~~~~~~~~-- 77 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--GYRLSVIDSLTSQAGTDPITSALSMRPDGII--IAQDIPDFTVPD-- 77 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--TCEEEEECSSSSCSSSCHHHHHHTTCCSEEE--EESCC---------
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--CCEEEEEeCCCchHHHHHHHHHHhCCCCEEE--ecCCCChhhHhh--
Confidence 4579999999988899999999999997654 55655443 2455554 111111222222
Q ss_pred ccCCccccccCCCC----------CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHH---HHHhhcCCC
Q 008424 157 NQGGFDMICSGRDK----------IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLA---EHFRSKNLK 217 (566)
Q Consensus 157 n~GG~~~LGSsR~k----------~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~La---e~~~~~~~~ 217 (566)
-|..++--.|.. .++.+.-..+.+.|.+++-.-+.+++|.... ....+. +.+++++..
T Consensus 78 --~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~~~~ 148 (280)
T 3gyb_A 78 --SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGA-GLRRFESFEATMRAHGLE 148 (280)
T ss_dssp ---CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHH-HHHHHHHHHHHHHHTTCC
T ss_pred --cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCch-HHHHHHHHHHHHHHcCcC
Confidence 232232222211 1234556778888888999999999998776 333332 344555543
No 83
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=35.47 E-value=87 Score=30.58 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=66.2
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcC------CCE---------EecCcccccchhccC
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK------CKY---------VELTSNYIYPYRNQG 159 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~------~~~---------~eLt~~~v~~~~n~G 159 (566)
.+-++|+++|+-|- .+..+. .. ..-+++.=+|..=|++ ..+ --++++..+.|...|
T Consensus 21 ~~~~lIv~ng~~~~---~~~~~~----~~--~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~~ 91 (247)
T 3s4y_A 21 LKYCLVILNQPLDN---YFRHLW----NK--ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATKG 91 (247)
T ss_dssp CCEEEEECSSCCCT---THHHHH----HH--CSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHTT
T ss_pred CCEEEEEECCcchH---HHHHHH----hh--CCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhcC
Confidence 46777778888873 233222 22 3457888888777766 222 223344455566665
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHc------CCCEEEEeCCchh-----HHHHHHHHHHHhhcCCCce
Q 008424 160 GFDMICSGRDKIETPEQFKQATETAVKL------DLDGLVVIGGDDS-----NTNACLLAEHFRSKNLKTL 219 (566)
Q Consensus 160 G~~~LGSsR~k~~~~e~~~~~~~~l~~l------~Id~LviIGGddS-----~t~A~~Lae~~~~~~~~i~ 219 (566)
- .++-. .. ++..++++|++.+.+. +.+-++++|+-|. +.+...|..+.+..+.++.
T Consensus 92 ~-~i~~~-pe--KD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~~~~~~~~~i~ 158 (247)
T 3s4y_A 92 C-ELIST-PD--QDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPII 158 (247)
T ss_dssp C-EEEEC-CC--TTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHHGGGTCSSCEE
T ss_pred C-EEEEC-CC--CCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHHHhhccCceEE
Confidence 3 35532 12 3456789998887664 7899999999764 4555555544322344333
No 84
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.42 E-value=2e+02 Score=27.20 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHc-CCCEEEEeCCchhHHHHHHHHHHHhhcCC---CceEEEe
Q 008424 175 EQFKQATETAVKL-DLDGLVVIGGDDSNTNACLLAEHFRSKNL---KTLVMGC 223 (566)
Q Consensus 175 e~~~~~~~~l~~l-~Id~LviIGGddS~t~A~~Lae~~~~~~~---~i~VIGV 223 (566)
+.++.+.+.++++ ++++++|+..+|.+... ..+.+++.|. ++.|+|.
T Consensus 181 ~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g--~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 181 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLG--GVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEECSSHHHHHH--HHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcHHHHH--HHHHHHHcCCCCCceEEEEe
Confidence 4455555666554 69998888888876543 3355667776 5777774
No 85
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.15 E-value=2.7e+02 Score=25.89 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=61.3
Q ss_pred CCcEEEEEeCCCC--CchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 93 EKLKIGVVLSGGQ--APGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 93 ~~~~IgIv~sGG~--aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
+..+|||++..-. .|-...++.|+-+.+++. +.++. +......
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~~ 48 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--EIKLE---------------------------------FMAPEKE 48 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------ECCCSST
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCCCC
Confidence 3468999998766 788888899998887653 22211 0000000
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
.+.+.....++.+...++|++++.+.+.+... ..+ +.+.+. +++||.+ |.+........++++|-
T Consensus 49 -~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-~~~-~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~ 113 (289)
T 3brs_A 49 -EDYLVQNELIEEAIKRKPDVILLAAADYEKTY-DAA-KEIKDA--GIKLIVI----DSGMKQDIADITVATDN 113 (289)
T ss_dssp -TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-HHH-TTTGGG--TCEEEEE----SSCCSSCCCSEEEECCH
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHC--CCcEEEE----CCCCCCCcceEEEeeCh
Confidence 12344556777888899999999987654211 112 223333 4677765 44433221114566553
No 86
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.67 E-value=56 Score=29.59 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=54.2
Q ss_pred CCcEEEEEeCCCCCchh-hHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCccc-ccchhccCCccccccCCCC
Q 008424 93 EKLKIGVVLSGGQAPGG-HNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNY-IYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~-nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~-v~~~~n~GG~~~LGSsR~k 170 (566)
...+|-+-+.||+.--+ -++++.+++. .|++|+- + |. ..+.+. ++..+.. +.+++|-|-..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~-----~G~eVi~-l-G~---------~~p~e~lv~aa~~~-~~diV~lS~~~ 79 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRD-----AGFEVVY-T-GL---------RQTPEQVAMAAVQE-DVDVIGVSILN 79 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHH-----TTCEEEC-C-CS---------BCCHHHHHHHHHHT-TCSEEEEEESS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHH-----CCCEEEE-C-CC---------CCCHHHHHHHHHhc-CCCEEEEEeec
Confidence 34678888888876433 3445544433 4677651 1 11 134443 3333333 44677755443
Q ss_pred CCCHHHHHHHHHHHHHcCC-CEEEEeCCchh
Q 008424 171 IETPEQFKQATETAVKLDL-DGLVVIGGDDS 200 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~I-d~LviIGGddS 200 (566)
-.+.+.+.+.++.|++.++ +..|++||.-.
T Consensus 80 ~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 80 GAHLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hhhHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 3456778888888988877 67788898644
No 87
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=33.25 E-value=1.2e+02 Score=28.84 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEcc---ChhhhcCCCEEecCcccccchhccCCccccccCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRG---GPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGR 168 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR 168 (566)
..++||+|+.||.. +| ...++++++...-..+|.++.- ...|+ .+...=|-...--.+
T Consensus 5 m~~~ri~vl~SG~g----sn-l~all~~~~~~~l~~~I~~Visn~~~a~~l--------------~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 5 MKRNRVVIFISGGG----SN-MEALIRAAQAPGFPAEIVAVFSDKAEAGGL--------------AKAEAAGIATQVFKR 65 (209)
T ss_dssp -CCEEEEEEESSCC----HH-HHHHHHHHTSTTCSEEEEEEEESCTTCTHH--------------HHHHHTTCCEEECCG
T ss_pred CCCccEEEEEECCc----HH-HHHHHHHHHcCCCCcEEEEEEECCcccHHH--------------HHHHHcCCCEEEeCc
Confidence 34579999999982 22 4455665533222346665552 11221 111111322222122
Q ss_pred CCCCCHHHH-HHHHHHHHHcCCCEEEEeC
Q 008424 169 DKIETPEQF-KQATETAVKLDLDGLVVIG 196 (566)
Q Consensus 169 ~k~~~~e~~-~~~~~~l~~l~Id~LviIG 196 (566)
..+.+.+.+ +.+.+.+++++.|.+|+.|
T Consensus 66 ~~~~~r~~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 66 KDFASKEAHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp GGSSSHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 233344544 4678889999999888876
No 88
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=32.31 E-value=16 Score=35.23 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=65.6
Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCE---------EecCcccccchhccCCccccccCC
Q 008424 98 GVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKY---------VELTSNYIYPYRNQGGFDMICSGR 168 (566)
Q Consensus 98 gIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~---------~eLt~~~v~~~~n~GG~~~LGSsR 168 (566)
++|++||+.|-... . + ......++|.=+|..=|++..+ =-++++.++.|...|= .++--..
T Consensus 4 ~~I~~gG~~~~~~~------~-~--~~~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~~~~~~~ 73 (222)
T 3mel_A 4 VLLVAGGNPSDWPT------I-E--PATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTE-TLIQAPA 73 (222)
T ss_dssp EEEECSSCGGGCCC------C-C--GGGCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCS-SEEECCS
T ss_pred EEEEECCCCccchh------H-H--hhcCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCC-cEEECCc
Confidence 56777998763210 0 1 1134578899999888887543 2334445555655542 2332222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC-EEEEeCCch-----hHHHHHHHHHH-HhhcCCCce
Q 008424 169 DKIETPEQFKQATETAVKLDLD-GLVVIGGDD-----SNTNACLLAEH-FRSKNLKTL 219 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id-~LviIGGdd-----S~t~A~~Lae~-~~~~~~~i~ 219 (566)
.| +..+++++++.+.+++-+ -++++|+.| ++.+...|... +.+.+.++.
T Consensus 74 eK--D~TD~e~Al~~~~~~~~~~~I~i~Ga~GgRlDH~lani~lL~~~~~~~~~~~i~ 129 (222)
T 3mel_A 74 EK--DDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPRFQGVLRQIR 129 (222)
T ss_dssp SC--SSCHHHHHHHHHHHHCTTSEEEEECCCSSCHHHHHHHHTGGGSHHHHTTGGGEE
T ss_pred cC--CCCHHHHHHHHHHHhCCCceEEEEccCCCCHHHHHHHHHHHHhhHHhccCceEE
Confidence 22 456899999999998887 999999977 45555555442 344443333
No 89
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=32.08 E-value=73 Score=32.51 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL----DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l----~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ .+.+||-.
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 115 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVH--TDKPIVLV 115 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 677887777777765 79999999999999775555455544 34466655
No 90
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=32.01 E-value=79 Score=32.40 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHH----cCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVK----LDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~----l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.+++ -+.|++||.=|-|||.-.+.+-.++. +.+.+||-.
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlT 123 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVV 123 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEe
Confidence 67788888877777 47999999999999976555445544 445566655
No 91
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=31.62 E-value=88 Score=29.57 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=47.5
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCE-EEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSV-LYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDK 170 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~-v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k 170 (566)
.+..+|||++..-.-|-...++.|+-+.+++. +.+ +.- ..+.
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~~-- 50 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--GYTALIS---------------------------------FSTN-- 50 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECSS--
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--CCCEEEE---------------------------------EeCC--
Confidence 34579999999888888888999998887653 333 221 0111
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Q 008424 171 IETPEQFKQATETAVKLDLDGLVVIG 196 (566)
Q Consensus 171 ~~~~e~~~~~~~~l~~l~Id~LviIG 196 (566)
.+.+...+.++.+...++|++|+.+
T Consensus 51 -~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 51 -SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred -CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 1234456678889999999999998
No 92
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=31.54 E-value=49 Score=33.44 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccc--cCCCCCCCHHHHHHHHHHHHHcCCC
Q 008424 113 ISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMIC--SGRDKIETPEQFKQATETAVKLDLD 190 (566)
Q Consensus 113 I~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--SsR~k~~~~e~~~~~~~~l~~l~Id 190 (566)
++..++.++...|. .+-+-.|..|...... .+....+.+.=|...+- |||. .+.++++..+..+..++|+
T Consensus 41 l~~~~~~l~~l~p~--fvsVT~gagg~~r~~t----~~~a~~i~~~~g~~~v~Hltc~~--~~~~~l~~~L~~~~~~GI~ 112 (304)
T 3fst_A 41 LWNSIDRLSSLKPK--FVSVTYGANSGERDRT----HSIIKGIKDRTGLEAAPHLTCID--ATPDELRTIARDYWNNGIR 112 (304)
T ss_dssp HHHHHHHHHTTCCS--EEEECCCTTSSCHHHH----HHHHHHHHHHHCCCEEEEEESTT--SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCC--EEEEeeCCCCcchhHH----HHHHHHHHHHhCCCeeEEeecCC--CCHHHHHHHHHHHHHCCCC
Confidence 44455666555443 3566677766543222 22233444422322222 5666 3778999999999999999
Q ss_pred EEEEeCCch------hHHHHHHHHHHHhhc-CCCceEEEee
Q 008424 191 GLVVIGGDD------SNTNACLLAEHFRSK-NLKTLVMGCP 224 (566)
Q Consensus 191 ~LviIGGdd------S~t~A~~Lae~~~~~-~~~i~VIGVP 224 (566)
.++++.||- ....|..|.++.++. +..+.|.+-|
T Consensus 113 nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 113 HIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp EEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999883 344577888877664 4555666666
No 93
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.18 E-value=3.5e+02 Score=25.64 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=54.1
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
+.+||+++.....|-...++.|+-+.++.. +.++. +..+. .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~l~---------------------------------~~~~~---~~ 43 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK---------------------------------IADGQ---QK 43 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CC
Confidence 478999999888888888889988887653 22211 00111 12
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 44 QENQIKAVRSFVAQGVDAIFIAPVVATGWE-PVL-KEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSSSSCH-HHH-HHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHCC--CCEEEe
Confidence 344456677788889999999987653111 112 2333344 567765
No 94
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=30.93 E-value=56 Score=31.47 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCEEEEEccChhhhcCCCE---------EecCcccccchhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Q 008424 126 GSVLYGFRGGPAGIMKCKY---------VELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIG 196 (566)
Q Consensus 126 ~~~v~Gf~~G~~GLl~~~~---------~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIG 196 (566)
...++|.=+|..=|++..+ =-++++.++.|...|- .++-....| +..+++++++.+.+++.+-++++|
T Consensus 24 ~~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~-~i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~G 100 (223)
T 3k94_A 24 DVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFP-DLDVWPAEK--DKTDMEIALDWAVEQTARCIRLFG 100 (223)
T ss_dssp TEEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCT-TCCEECCBT--TBCHHHHHHHHHHTTCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCC-eEEECCCcC--CCCHHHHHHHHHHHcCCCEEEEEc
Confidence 3567888888877765322 2344455555665542 243322222 456899999999999999999999
Q ss_pred Cchh-----HHHHHHHHHHHhhcCCCceEE
Q 008424 197 GDDS-----NTNACLLAEHFRSKNLKTLVM 221 (566)
Q Consensus 197 GddS-----~t~A~~Lae~~~~~~~~i~VI 221 (566)
+-|. +.+...|.. +.+.++.++
T Consensus 101 a~GGR~DH~lani~lL~~---~~~~~i~li 127 (223)
T 3k94_A 101 ATGGRLDHLFGNVELLLK---YADRPIEIV 127 (223)
T ss_dssp CSSSSHHHHHHHHHHHHH---TTTSCEEEE
T ss_pred CCCCchhHHHHHHHHHHh---ccCCeEEEE
Confidence 9774 445555543 344444433
No 95
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=30.86 E-value=57 Score=32.37 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=56.1
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-.-|-...++.|+-+.+++. +.+++ +..+. .
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 110 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--GLQLL---------------------------------LGYTA---Y 110 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---C
Confidence 4468999998877788888888988887543 33332 11110 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+.+...+.++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+
T Consensus 111 ~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 111 SPEREEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRAS--IPIVEI 155 (355)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHCC--SCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 23445677888889999999999887654322 3334444 567765
No 96
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=30.72 E-value=39 Score=34.16 Aligned_cols=102 Identities=12% Similarity=0.182 Sum_probs=61.4
Q ss_pred HHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccc--cCCCCCCCHHHHHHHHHHHHHcCCCE
Q 008424 114 SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMIC--SGRDKIETPEQFKQATETAVKLDLDG 191 (566)
Q Consensus 114 ~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--SsR~k~~~~e~~~~~~~~l~~l~Id~ 191 (566)
+...+.++...+ .-+-+-+|..|-.... |.+....++.. |...+- |||. .+.+.++..+..+..++|+.
T Consensus 32 ~~~~~~L~~~~p--d~vsVT~~~~g~~r~~----t~~~a~~i~~~-g~~~i~Hltc~~--~~~~~l~~~L~~~~~~GI~n 102 (310)
T 3apt_A 32 FRTLEELKAFRP--AFVSITYGAMGSTRER----SVAWAQRIQSL-GLNPLAHLTVAG--QSRKEVAEVLHRFVESGVEN 102 (310)
T ss_dssp HHHHHHHGGGCC--SEEEECCCSTTCSHHH----HHHHHHHHHHT-TCCBCEEEECTT--SCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCC--CEEEEecCCCCCcchh----HHHHHHHHHHh-CCCeEEEeecCC--CCHHHHHHHHHHHHHCCCCE
Confidence 334455544433 3355666665532222 22223333423 322222 5666 47889999999999999999
Q ss_pred EEEeCCchh------------HHHHHHHHHHHhhc-C--CCceEEEee
Q 008424 192 LVVIGGDDS------------NTNACLLAEHFRSK-N--LKTLVMGCP 224 (566)
Q Consensus 192 LviIGGddS------------~t~A~~Lae~~~~~-~--~~i~VIGVP 224 (566)
++++.||-. ...|..|-++.++. | ..+-|.+-|
T Consensus 103 iLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 103 LLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp EEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999932 34688888877765 4 445555555
No 97
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=30.65 E-value=1.6e+02 Score=27.56 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=59.6
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
++|||++..-..|--..++.|+-+.++.. +.+++ +..+. .+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 43 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV---------------------------------VLDSQ---NNP 43 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TCH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHc--CcEEE---------------------------------EeCCC---CCH
Confidence 58999998877888888889998887653 22221 10111 122
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.-...++.+...++|++++.+.+..... ..+ +.+.+.+ ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~ 105 (271)
T 2dri_A 44 AKELANVQDLTVRGTKILLINPTDSDAVG-NAV-KMANQAN--IPVITL----DRQATKGEVVSHIASDN 105 (271)
T ss_dssp HHHHHHHHHHTTTTEEEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCC--CcEEEe----cCCCCCCceeEEEecCh
Confidence 33345667788889999999876543211 112 3334444 567754 55444322213566653
No 98
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=30.30 E-value=2.4e+02 Score=30.43 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=74.4
Q ss_pred chhccCCccccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe------------------------------CCchhHHH
Q 008424 154 PYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVI------------------------------GGDDSNTN 203 (566)
Q Consensus 154 ~~~n~GG~~~LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviI------------------------------GGddS~t~ 203 (566)
.|... |+ ||-++|..+ +.+.+++.++.+-.++++.|..= ||-=|...
T Consensus 156 rf~~R-G~-mLD~aR~f~-~~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~d 232 (512)
T 1jak_A 156 RYAWR-SA-MLDVSRHFF-GVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAE 232 (512)
T ss_dssp SCSEE-EE-EEECSSSCC-CHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHH
T ss_pred CCCcc-ce-eeccCCCCC-CHHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHH
Confidence 34444 65 999999765 68899999999999999999632 34457788
Q ss_pred HHHHHHHHhhcCCCceEEE--------------eecccc-CC-------CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 008424 204 ACLLAEHFRSKNLKTLVMG--------------CPKTID-GD-------LKCKEVPASFGFDTACKIYAEMIGNVMIDAR 261 (566)
Q Consensus 204 A~~Lae~~~~~~~~i~VIG--------------VPKTID-ND-------L~~~~ie~S~GFdTA~k~~se~I~ni~~Da~ 261 (566)
...|.+|++++|+ .||= -|.=-. +. .....-..+++-+.+.+++.++++.+. +.-
T Consensus 233 i~eiv~yA~~rgI--~VIPEID~PGH~~a~l~aypeL~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~-~lF 309 (512)
T 1jak_A 233 YKEIVRYAASRHL--EVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELA-ALT 309 (512)
T ss_dssp HHHHHHHHHHTTC--EEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHcCC--EEEEccCCCchHHHHHHhCHHhcCcCCCCccccccCcCCcccCCCCHHHHHHHHHHHHHHH-HhC
Confidence 8999999998885 3441 121100 00 000011246777889999999999886 333
Q ss_pred hcCCeeEEE--EE
Q 008424 262 STGKYYHFV--RL 272 (566)
Q Consensus 262 S~~k~~~fV--ev 272 (566)
. .+|+|+= |+
T Consensus 310 p-~~~iHiGgDE~ 321 (512)
T 1jak_A 310 P-GRYLHIGGDEA 321 (512)
T ss_dssp C-SSEEECCCCCC
T ss_pred C-CCeEEECCccc
Confidence 3 3677765 65
No 99
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=30.01 E-value=2.8e+02 Score=26.89 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-.-|-...++.|+-+.+.+. +.++.- ..+. .
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~---~ 102 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--GYQMLI---------------------------------GNSH---Y 102 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--TCEEEE---------------------------------EECT---T
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC---C
Confidence 3468999998888888889999999887653 333320 0100 1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+.+...+.++.+...++||+|+.+-+.+... .+.+.+.+ ++||.+
T Consensus 103 ~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 103 DAGQELQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHA--LPVVYM 147 (339)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCC--CCEEEE
Confidence 2344567788888999999999987654322 23334444 567655
No 100
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=29.88 E-value=1.8e+02 Score=28.26 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCC
Q 008424 92 DEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKI 171 (566)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~ 171 (566)
.+..||||+..- +-|.++++-.|+.+.|++. | ..++.-+++. +.|..|
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~-----------G---~~~g~nv~~~------~~~a~g----------- 53 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKAK-----------G---YEEGKNLEFD------YKTAQG----------- 53 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHHT-----------T---CCBTTTEEEE------EEECTT-----------
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHhh-----------C---cccCCcEEEE------EEeCCC-----------
Confidence 456899999874 6799999999999998763 1 1122212221 233333
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGG 197 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGG 197 (566)
+......+++.+...+.|.+|.||.
T Consensus 54 -d~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 54 -NPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEESH
T ss_pred -CHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 3456777888999999999888763
No 101
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=29.33 E-value=79 Score=32.17 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL----DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l----~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ .+.+||-.
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 118 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFV 118 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEe
Confidence 677887777777765 79999999999999775555455544 34456654
No 102
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=28.02 E-value=4e+02 Score=25.35 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+|||++..-.-|=...++.|+-+.+++. +.++.-+ .+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 44 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--GYKTDLQ---------------------------------YAD---DD 44 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--CCEEEEe---------------------------------eCC---CC
Confidence 478999999988899999999999987653 3332200 000 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCC-CCCCCCCChH
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKC-KEVPASFGFD 243 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~-~~ie~S~GFd 243 (566)
.+...+.++.+...++|++|+.+-+..... ...+.+.+.| ++||.+ |++..+ ..+..++|+|
T Consensus 45 ~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~--~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 45 IPNQLSQIENMVTKGVKVLVIASIDGTTLS--DVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSGGGGH--HHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCchhHH--HHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 344556778888889999999987753211 1223333444 677765 555544 2333466655
No 103
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=27.79 E-value=80 Score=32.22 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL----DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l----~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ .+.+||-.
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 118 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLH--STKPVVLV 118 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEE
Confidence 677887777777765 79999999999999775555455544 34466654
No 104
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.46 E-value=2.9e+02 Score=25.92 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-..|=...++.|+-+.+++. +.++.-+. +..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~-----------------------~~~~------------ 49 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--GYNLIIVY-----------------------SGSA------------ 49 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--TCEEEEEC---------------------------------------
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEEEEe-----------------------CCCC------------
Confidence 4478999998888888889999999887542 22221000 0001
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
+.+.....++.+...++|++|+.+.+.+. ..+ +.+.+. +++||.+-.
T Consensus 50 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~-~~l~~~--~iPvV~~~~ 96 (290)
T 3clk_A 50 DPEEQKHALLTAIERPVMGILLLSIALTD---DNL-QLLQSS--DVPYCFLSM 96 (290)
T ss_dssp ------CHHHHHHSSCCSEEEEESCC-------CH-HHHHCC----CEEEESC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecccCCH---HHH-HHHHhC--CCCEEEEcC
Confidence 11122345666778899999999877542 122 334443 467776543
No 105
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=27.32 E-value=41 Score=30.05 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcCCCceEEEeeccccCCC
Q 008424 204 ACLLAEHFRSKNLKTLVMGCPKTIDGDL 231 (566)
Q Consensus 204 A~~Lae~~~~~~~~i~VIGVPKTIDNDL 231 (566)
...|.+.+++.+...-|||.|++.||..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCc
Confidence 4556666666678888999999999854
No 106
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.94 E-value=1.6e+02 Score=29.20 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCC-----EEEEeCCc--hhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 175 EQFKQATETAVKLDLD-----GLVVIGGD--DSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id-----~LviIGGd--dS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
..++.+.+.++...-. -++++||+ ++-.....|++.++++|+.+.|||+=.
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~ 146 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGE 146 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESS
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 5678888888754332 36666765 355667888999999999999999764
No 107
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.61 E-value=4.3e+02 Score=25.32 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=55.0
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+|||++..-..|-...++.|+-+.+++. +.++ + +..+. .
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~l---------------~------------------~~~~~---~ 45 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--GLPY---------------V------------------PLTTE---G 45 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCCE---------------E------------------EEECT---T
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--CCEE---------------E------------------EecCC---C
Confidence 3468999998877788888889998887653 1111 1 00110 1
Q ss_pred CHHHHHHHHHHHHHcC--CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 173 TPEQFKQATETAVKLD--LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~--Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
+.+.....++.+...+ +|++|+.+.+.+.. ..+.+.+.+.+ ++||.+-.
T Consensus 46 ~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~ 96 (332)
T 2rjo_A 46 SSEKGIADIRALLQKTGGNLVLNVDPNDSADA--RVIVEACSKAG--AYVTTIWN 96 (332)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEECCSSHHHH--HHHHHHHHHHT--CEEEEESC
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CeEEEECC
Confidence 2344455677777788 99999998765421 11223333334 67776643
No 108
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=26.17 E-value=4.5e+02 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcC
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN 215 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~ 215 (566)
+++..+.+++.++++++|.++. +-+.....++.+++.+.+.|
T Consensus 57 ~~~~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g 98 (331)
T 2pn1_A 57 EVEYIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG 98 (331)
T ss_dssp STTHHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT
T ss_pred ChhHHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC
Confidence 3455788899999999998765 44444445556677776555
No 109
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=25.03 E-value=81 Score=32.15 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL----DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l----~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ .+.+||-.
T Consensus 64 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 116 (330)
T 1wsa_A 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVK--SQKPVVLV 116 (330)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 577777777777664 79999999999999775555455544 34466654
No 110
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=25.00 E-value=79 Score=27.96 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=46.2
Q ss_pred EEEEeCCchhH---HHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCee
Q 008424 191 GLVVIGGDDSN---TNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYY 267 (566)
Q Consensus 191 ~LviIGGddS~---t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdTA~k~~se~I~ni~~Da~S~~k~~ 267 (566)
.++++=|.+|. .-+..|++++.+++....|+ .| |+++. | .++.+.+...+.... ..+ +
T Consensus 4 tIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~-~p-----dl~~~------g-~~~~~~l~~~~~~~~-----~~~-i 64 (202)
T 4fle_A 4 TLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQ-IP-----QLPPY------P-AEAAEMLESIVMDKA-----GQS-I 64 (202)
T ss_dssp EEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEE-CC-----CCCSS------H-HHHHHHHHHHHHHHT-----TSC-E
T ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEE-Ee-----CCCCC------H-HHHHHHHHHHHHhcC-----CCc-E
Confidence 46667664432 34678899999888777776 33 45421 2 344444444443331 223 2
Q ss_pred EEEEEcCCCCc-hHHHHhhhhcCCcE
Q 008424 268 HFVRLMGRAAS-HITLECALQTHPNI 292 (566)
Q Consensus 268 ~fVevMGR~ag-~LALe~aLqt~pni 292 (566)
=++|+|-| ++|+..|.+.....
T Consensus 65 ---~l~G~SmGG~~a~~~a~~~~~~~ 87 (202)
T 4fle_A 65 ---GIVGSSLGGYFATWLSQRFSIPA 87 (202)
T ss_dssp ---EEEEETHHHHHHHHHHHHTTCCE
T ss_pred ---EEEEEChhhHHHHHHHHHhcccc
Confidence 36788875 77777776654433
No 111
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=24.99 E-value=75 Score=29.27 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCCCC--HHHHHHHHHHHHHc----C-CCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCC
Q 008424 169 DKIET--PEQFKQATETAVKL----D-LDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFG 241 (566)
Q Consensus 169 ~k~~~--~e~~~~~~~~l~~l----~-Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~G 241 (566)
+++++ .+++....+++... . =|-++|=||-|=...|...-+ +.|..++|||+-|- ...+..+.-+..+-
T Consensus 53 f~I~~~g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~---elg~~i~v~glAK~-~e~l~~~~~~i~L~ 128 (159)
T 2nrr_A 53 YKIEQDHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALK---EIGKDCPVVGLAKK-EETVVFENREIHLP 128 (159)
T ss_dssp EEC-----CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHH---HTTCCCCEEEEC-----CEEETTEEECCC
T ss_pred eecCCCCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHH---HcCCCccEEEEEcC-CcEEEeCCCeeecC
Confidence 45554 36888888888764 2 466777789888887775544 45788999999993 01111000011222
Q ss_pred h-HHHHHHHHHHHHHHHHHHhhcCC
Q 008424 242 F-DTACKIYAEMIGNVMIDARSTGK 265 (566)
Q Consensus 242 F-dTA~k~~se~I~ni~~Da~S~~k 265 (566)
= +-+.+.+..+=++.++=|.+.++
T Consensus 129 ~~s~~l~llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 129 HDHPVLRLLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23567777777777777777554
No 112
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.88 E-value=4.3e+02 Score=24.68 Aligned_cols=89 Identities=9% Similarity=0.062 Sum_probs=54.3
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+||+++.....|-...++.|+-+++++. +.++. ++..+. .+
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~~ 46 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEF--NLNAS--------------------------------QVGPSS---TD 46 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--TEEEE--------------------------------EECCSS---SC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHc--CCEEE--------------------------------EECCCC---CC
Confidence 478999998777788888899998887653 21110 011111 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
++.....++.+...++|++|+.+.+.+.. ...+ +.+.+.+ ++||.+
T Consensus 47 ~~~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~~-~~~~~~~--ipvV~~ 92 (303)
T 3d02_A 47 APQQVKIIEDLIARKVDAITIVPNDANVL-EPVF-KKARDAG--IVVLTN 92 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCHHHH-HHHH-HHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCChHHH-HHHH-HHHHHCC--CeEEEE
Confidence 34455667778889999999988754321 1222 3344444 677765
No 113
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=24.55 E-value=69 Score=32.43 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCC
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGD 230 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDND 230 (566)
.+.+.+++.+-+ ..|.++||||-.|. |..+|+|-+++.+.+.-.|-=+.=||-+
T Consensus 197 ~~RQ~av~~la~-~~D~miVVGg~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~~~ 250 (297)
T 3dnf_A 197 SLRQESVKKLAP-EVDVMIIIGGKNSG-NTRRLYYISKELNPNTYHIETAEELQPE 250 (297)
T ss_dssp HHHHHHHHHHGG-GSSEEEEESCTTCH-HHHHHHHHHHHHCSSEEEESSGGGCCGG
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-hhHHHHHHHHhcCCCEEEeCChHHCCHH
Confidence 445555555544 59999999997763 4578999988887665555445555433
No 114
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=24.48 E-value=95 Score=32.08 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEe
Q 008424 173 TPEQFKQATETAVKL--DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGC 223 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l--~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGV 223 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ +.+.+||-.
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~-~~~kPVVlT 135 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLE-NLGKPVIVT 135 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHHHHHHHHEE-TCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHHHHHh-cCCCCEEEe
Confidence 678888888887776 79999999999999765554455543 234456654
No 115
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=24.37 E-value=1.8e+02 Score=28.26 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=47.0
Q ss_pred CcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCC
Q 008424 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIET 173 (566)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~ 173 (566)
..+||+++..-..|-...++.|+-+.+++. +.++. +..+. .+
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~~ 99 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW---NN 99 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---TC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---CC
Confidence 468999998777788888888988887542 22221 00000 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchh
Q 008424 174 PEQFKQATETAVKLDLDGLVVIGGDDS 200 (566)
Q Consensus 174 ~e~~~~~~~~l~~l~Id~LviIGGddS 200 (566)
.+.....++.+...++|++|+.+.+.+
T Consensus 100 ~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 100 LEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 344566778888899999999987754
No 116
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=24.33 E-value=2.4e+02 Score=27.14 Aligned_cols=89 Identities=9% Similarity=-0.070 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
.+||+++..-..|=...++.|+-+.+++. +.++. +...+. .+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~d~ 46 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKAL--GIDVT--------------------------------YDGPTE---PSV 46 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------ECCCSS---CCH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHh--CCEEE--------------------------------EECCCC---CCH
Confidence 58999998777787888888888877653 21111 001111 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
+.....++.+...++|+||+.+-+.+.. ...+ +.+.+. +++||.+-
T Consensus 47 ~~q~~~i~~li~~~vdgiii~~~~~~~~-~~~~-~~a~~~--gipvV~~d 92 (316)
T 1tjy_A 47 SGQVQLVNNFVNQGYDAIIVSAVSPDGL-CPAL-KRAMQR--GVKILTWD 92 (316)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSSTT-HHHH-HHHHHT--TCEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHHH-HHHH-HHHHHC--cCEEEEec
Confidence 4445567778889999999988765421 1122 233334 46788763
No 117
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=24.31 E-value=3.6e+02 Score=25.96 Aligned_cols=136 Identities=15% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCCcEEEEEeC--CCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccC--
Q 008424 92 DEKLKIGVVLS--GGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSG-- 167 (566)
Q Consensus 92 ~~~~~IgIv~s--GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSs-- 167 (566)
.++.+||+++. |..+|-+..+..|+-.++...| ..|| ++|..
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n--------------------------------~~gg--i~G~~~~ 47 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFN--------------------------------AAGG--VGGRPVD 47 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHH--------------------------------HTTT--BTTBCEE
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHH--------------------------------hhCC--CCCeEEE
Q ss_pred ---CCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChH
Q 008424 168 ---RDKIETPEQFKQATETAV-KLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD 243 (566)
Q Consensus 168 ---R~k~~~~e~~~~~~~~l~-~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFd 243 (566)
++--.+++.-.+.++.+. +.+++++|...+......+..+++.. ++++| .|-+-+.++.... ...|-..
T Consensus 48 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~-----~iP~v-~~~~~~~~~~~~~-~~~~~~~ 120 (358)
T 3hut_A 48 ILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKE-----GMPQL-SPTAAHPDYIKIS-PWQFRAI 120 (358)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHH-----TCCEE-ESSCCCGGGTTSC-TTEEESS
T ss_pred EEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHC-----CCcEE-ecCCCCcccccCC-CeEEEec
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeeEEE
Q 008424 244 TACKIYAEMIGNVMIDARSTGKYYHFV 270 (566)
Q Consensus 244 TA~k~~se~I~ni~~Da~S~~k~~~fV 270 (566)
.--...+..+-+...+. -.+++.+|
T Consensus 121 ~~~~~~~~~~~~~l~~~--g~~~ia~i 145 (358)
T 3hut_A 121 TTPAFEGPNNAAWMIGD--GFTSVAVI 145 (358)
T ss_dssp CCGGGHHHHHHHHHHHT--TCCEEEEE
T ss_pred CChHHHHHHHHHHHHHc--CCCEEEEE
No 118
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=24.29 E-value=94 Score=31.90 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEE
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVM 221 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VI 221 (566)
.+.+.+++.+-+ ..|.++||||-.|. |..+|+|-+++.|.+.--|
T Consensus 213 ~~RQ~av~~lA~-~vD~miVVGg~nSS-NT~rL~eia~~~g~~ty~I 257 (328)
T 3szu_A 213 TNRQEAVRALAE-QAEVVLVVGSKNSS-NSNRLAELAQRMGKRAFLI 257 (328)
T ss_dssp HHHHHHHHHHHH-HCSEEEEECCTTCH-HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHH-hCCEEEEeCCCCCc-hHHHHHHHHHHhCCCEEEe
Confidence 456666666655 49999999997763 4578999988887543333
No 119
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=24.27 E-value=2.1e+02 Score=27.05 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=46.1
Q ss_pred cEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCH
Q 008424 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETP 174 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~ 174 (566)
+||+|+.||... ....+++.+.+..-..++.++.--.. +..+..+...=|-..+--.+.++.+.
T Consensus 2 ~rI~vl~SG~g~-----~~~~~l~~l~~~~~~~~i~~Vvs~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~r 65 (216)
T 2ywr_A 2 LKIGVLVSGRGS-----NLQAIIDAIESGKVNASIELVISDNP-----------KAYAIERCKKHNVECKVIQRKEFPSK 65 (216)
T ss_dssp EEEEEEECSCCH-----HHHHHHHHHHTTSSCEEEEEEEESCT-----------TCHHHHHHHHHTCCEEECCGGGSSSH
T ss_pred CEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----------ChHHHHHHHHcCCCEEEeCcccccch
Confidence 689999999762 24445555543211126666542110 00111112222322222122233444
Q ss_pred HHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHH
Q 008424 175 EQF-KQATETAVKLDLDGLVVIGGDDSNTNACLL 207 (566)
Q Consensus 175 e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~L 207 (566)
+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 98 (216)
T 2ywr_A 66 KEFEERMALELKKKGVELVVLAG-FMRILSHNFL 98 (216)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHH
T ss_pred hhhhHHHHHHHHhcCCCEEEEeC-chhhCCHHHH
Confidence 444 3567888999999777665 4433333333
No 120
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.05 E-value=49 Score=31.76 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCcEEEEEeC----CCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCC
Q 008424 93 EKLKIGVVLS----GGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGR 168 (566)
Q Consensus 93 ~~~~IgIv~s----GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR 168 (566)
+..+|||++. .-.-|=...++.|+-+.+++. +.++.-+. . .
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~---------~ 49 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLIP------------------------D---------E 49 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------E---------C
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEEe------------------------C---------C
Confidence 4478999997 455666777888888887543 33332110 0 0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 169 DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 169 ~k~~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
. . ++.....+.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 50 ~-~---~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 110 (294)
T 3qk7_A 50 P-G---EKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQN--FPFLAL----GRSHLPKPY-AWFDFDN 110 (294)
T ss_dssp T-T---CCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTT--CCEEEE----SCCCCSSCC-EEEEECH
T ss_pred C-h---hhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCC--CCEEEE----CCCCCCCCC-CEEEcCh
Confidence 0 0 112456777888999999999987644222 3344444 567643 554433332 3555553
No 121
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.67 E-value=1.2e+02 Score=32.37 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 173 TPEQFKQATETAVKL---DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l---~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++. +.+.+||-.=
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l--~~~KPVVlTG 201 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFML--RTPVPVVFTG 201 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHE--ECSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHHHHHHHh--CCCCCEEEEC
Confidence 577777777777665 8999999999999977555545554 3445666543
No 122
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=23.50 E-value=4.4e+02 Score=24.33 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCEEEEe-CCch----hHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 176 QFKQATETAVKLDLDGLVVI-GGDD----SNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviI-GGdd----S~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
.++..++.+++++++++=+- ...- +-..+..+.+.+++.|+.+..++.|-
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 69 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALV 69 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeecccc
Confidence 36788888999999999887 5432 11345678888888998887788885
No 123
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=23.44 E-value=75 Score=29.73 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+++.+.+.+++.++.+++.+|.+.|-. ..-.-.++- ....+|||||-.
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 94 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGA-AHLPGMVAA-----ATPLPVIGVPVP 94 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESS-CCHHHHHHH-----HCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCch-hhhHHHHHh-----ccCCCEEEeeCC
Confidence 678889999999999999665554432 222223332 246799999964
No 124
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=23.23 E-value=1.7e+02 Score=28.80 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=51.8
Q ss_pred EEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCCCHHHHH
Q 008424 99 VVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFK 178 (566)
Q Consensus 99 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~~ 178 (566)
||++|=-=||+-|.+.-+. +... .+|+++++|+ .+.+. +++.++
T Consensus 175 vvitGCsH~GI~Niv~~a~----~~~g-~~i~~viGGf-------------------------HL~~~------~~~~l~ 218 (267)
T 3h3e_A 175 VVITGCSHRGIDNILLDIA----ETFN-ERIKMVVGGF-------------------------HLLKS------SDDEIE 218 (267)
T ss_dssp EEEESCCTTCHHHHHHHHH----TTCS-SCEEEEEEEC-------------------------CCTTS------CHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHH----HHhC-CCceEEEecc-------------------------ccCCC------CHHHHH
Confidence 5667777789888887655 3333 7899988654 34322 568899
Q ss_pred HHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHH
Q 008424 179 QATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211 (566)
Q Consensus 179 ~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~ 211 (566)
++++.+++++++.++..==.+.. ..+.|.+.+
T Consensus 219 ~tl~~l~~~~~~~i~~~HCTg~~-a~~~L~~~l 250 (267)
T 3h3e_A 219 KIVKAFNELGVETVVPCHCTGER-AVDIFKREF 250 (267)
T ss_dssp HHHHHHHHTTCCEEEEETTSCHH-HHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEECCCCHH-HHHHHHHHC
Confidence 99999999999977765333333 344555544
No 125
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=22.88 E-value=49 Score=29.75 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCC
Q 008424 176 QFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLK 232 (566)
Q Consensus 176 ~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~ 232 (566)
+++.+++.+++.+.+-++||||-.-...+..+.+ .+.+--+|..+++|--
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 130 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTY 130 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEE
Confidence 4677788888878889999999877666554322 4678889999988864
No 126
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=22.80 E-value=3.3e+02 Score=27.90 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=59.5
Q ss_pred HHcCCCEEEEeCCch---hHHHHHHHHHHHhhcCCCceEEEeecccc---CCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 008424 185 VKLDLDGLVVIGGDD---SNTNACLLAEHFRSKNLKTLVMGCPKTID---GDLKCKEVPASFGFDTACKIYAEMIGNVMI 258 (566)
Q Consensus 185 ~~l~Id~LviIGGdd---S~t~A~~Lae~~~~~~~~i~VIGVPKTID---NDL~~~~ie~S~GFdTA~k~~se~I~ni~~ 258 (566)
++.....+++.|=|. -.+.+..|.+.++++|+++..++-.-|.- .|..-.. -.+-+|-++- .+..+..
T Consensus 165 ~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~--D~~~~~~~ag----~~e~~i~ 238 (350)
T 2g0t_A 165 YRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVI--DAVPADFVSG----VVEKAVL 238 (350)
T ss_dssp GGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCG--GGSBGGGHHH----HHHHHHH
T ss_pred eeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCC--CceecchhhH----HHHhhHH
Confidence 344666788888654 47788889999999999888877555532 2221111 1333443333 3333444
Q ss_pred HHhhcCCeeEEEEEcCCC--CchHHHHhhh--hcCCcEEEe
Q 008424 259 DARSTGKYYHFVRLMGRA--ASHITLECAL--QTHPNITII 295 (566)
Q Consensus 259 Da~S~~k~~~fVevMGR~--ag~LALe~aL--qt~pnivlI 295 (566)
++...+..|.+||-.|-- ..+.....++ ..+|+.+++
T Consensus 239 ~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 239 KLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred HhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 443334457899987642 2333222222 345666666
No 127
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=22.54 E-value=1.6e+02 Score=29.65 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred HHHhhcCCeeEEEEEcCC-CCchHHHHhhhhcCCcEEEeC
Q 008424 258 IDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITIIG 296 (566)
Q Consensus 258 ~Da~S~~k~~~fVevMGR-~ag~LALe~aLqt~pnivlIp 296 (566)
.......+.+.||=+||- +.||++|--+-..+.+.++++
T Consensus 18 ~~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar~~~d~vVVS 57 (287)
T 3q12_A 18 RRWRQEGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVT 57 (287)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHcCCeEEEEcCCCcccHHHHHHHHHHHHhCCEEEEE
Confidence 344455677999999996 789999988888888988875
No 128
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.91 E-value=2.3e+02 Score=25.17 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
++++++++++.+.+- +-++++|--.|...|..++..+.+.|. ++..++
T Consensus 25 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~~~g~--~~~~~~ 72 (187)
T 3sho_A 25 QPEAIEAAVEAICRA--DHVIVVGMGFSAAVAVFLGHGLNSLGI--RTTVLT 72 (187)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCGGGHHHHHHHHHHHHHTTC--CEEEEC
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCchHHHHHHHHHHHHhcCC--CEEEec
Confidence 578899999999876 599999998899989989888876554 454443
No 129
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.76 E-value=1.4e+02 Score=28.94 Aligned_cols=103 Identities=12% Similarity=0.158 Sum_probs=58.7
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchhccCCccccccCCCCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIE 172 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~ 172 (566)
+..+||+++..-..|-...++.|+-+.++.. +.++. +..+. .
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 100 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMY--KYNII---------------------------------LSNSD---Q 100 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECC---S
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 3468999998777888888999998887653 22211 00000 0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeeccccCCCCCCCCCCCCChHH
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKTIDNDL~~~~ie~S~GFdT 244 (566)
+.+.....++.+...++|++|+.+.+.+. ..+ +.+.+. +++||.+ |.+.....+ .++++|-
T Consensus 101 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~-~~l~~~--~iPvV~~----~~~~~~~~~-~~V~~D~ 161 (332)
T 2hsg_A 101 NQDKELHLLNNMLGKQVDGIIFMSGNVTE---EHV-EELKKS--PVPVVLA----ASIESTNQI-PSVTIDY 161 (332)
T ss_dssp HHHHHHHHHHHTSCCSSCCEEECCSSCCH---HHH-HHHTTS--SSCEEEE----SCCCSCTTS-CEEEECH
T ss_pred ChHHHHHHHHHHHhCCCcEEEEecCCCCH---HHH-HHHHhC--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 12334456677777899999999876543 222 334443 4667765 443332222 3566654
No 130
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=21.74 E-value=1.4e+02 Score=28.57 Aligned_cols=47 Identities=26% Similarity=0.205 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 172 ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 172 ~~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
.|++-++.+++.+++++|+.+|+---.|. +|.++.+.+ .| +++|.|.
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~--TA~k~~e~~--~~--i~lVvVT 73 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGD--TAMKALEMA--EG--LEVVVVT 73 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHHHC--TT--CEEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCh--HHHHHHHHh--cC--CeEEEEe
Confidence 35677899999999999999999877665 777888866 34 6788876
No 131
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=21.56 E-value=70 Score=29.78 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+++.+.+..+..++.+++.+|.+.|-. ..-.-.++- ....+|||||-.
T Consensus 46 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 46 TPKETVEFVENADNRGCAVFIAAAGLA-AHLAGTIAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEECSS-CCHHHHHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChh-hhhHHHHHh-----cCCCCEEEeecC
Confidence 678888899999999999666554432 222223332 346899999964
No 132
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=21.43 E-value=5.2e+02 Score=24.87 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=63.1
Q ss_pred cEEEEEeCCCCCchh----------hHHHHHHHHHHHhhCCCCEEEEEccChhhhcCCCEEecCcccccchh-ccCCccc
Q 008424 95 LKIGVVLSGGQAPGG----------HNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYR-NQGGFDM 163 (566)
Q Consensus 95 ~~IgIv~sGG~aPG~----------nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~-n~GG~~~ 163 (566)
+..+||+.||..--+ -..|.-+++.+++.. -.+|+-..+ .+.+..+. ..|. .+
T Consensus 18 ~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~--------------~~~i~~~~~~~g~-~v 81 (264)
T 3k8d_A 18 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATD--------------HEDVARAVEAAGG-EV 81 (264)
T ss_dssp CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEES--------------CHHHHHHHHHTTC-EE
T ss_pred ceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECC--------------HHHHHHHHHHcCC-EE
Confidence 467899999887533 357777787776543 345543331 22232222 2233 23
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCch---hHHHHHHHHHHHhhcCCCceEEEeec
Q 008424 164 ICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDD---SNTNACLLAEHFRSKNLKTLVMGCPK 225 (566)
Q Consensus 164 LGSsR~k~~~~e~~~~~~~~l~~l~Id~LviIGGdd---S~t~A~~Lae~~~~~~~~i~VIGVPK 225 (566)
+-+........+.+..+++.+...+-+.++++-||- +-.....|.+.+.+.+..+.+.++|.
T Consensus 82 ~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v 146 (264)
T 3k8d_A 82 CMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 146 (264)
T ss_dssp EECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC
T ss_pred EEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc
Confidence 322111111112233333333212568999999995 33455666777777677788888875
No 133
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=20.87 E-value=2.9e+02 Score=26.29 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEcc---ChhhhcCCCEEecCcccccchhccCCccccccCCC
Q 008424 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRG---GPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRD 169 (566)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGSsR~ 169 (566)
+++||+|+.||. ++| ...++++++.. .+.+|.++.- ...|+ .+...=|-...--.+.
T Consensus 4 ~~~riavl~SG~----Gsn-l~all~~~~~~-~~~eI~~Vis~~~~a~~~--------------~~A~~~gIp~~~~~~~ 63 (215)
T 3tqr_A 4 EPLPIVVLISGN----GTN-LQAIIGAIQKG-LAIEIRAVISNRADAYGL--------------KRAQQADIPTHIIPHE 63 (215)
T ss_dssp CCEEEEEEESSC----CHH-HHHHHHHHHTT-CSEEEEEEEESCTTCHHH--------------HHHHHTTCCEEECCGG
T ss_pred CCcEEEEEEeCC----cHH-HHHHHHHHHcC-CCCEEEEEEeCCcchHHH--------------HHHHHcCCCEEEeCcc
Confidence 468999999996 222 34455554332 3456666542 11121 1111112222211122
Q ss_pred CCCCHHHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 170 KIETPEQF-KQATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 170 k~~~~e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
++.+.+.+ +++++.+++++.|.+|+.| .+-.-....|.
T Consensus 64 ~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~ 102 (215)
T 3tqr_A 64 EFPSRTDFESTLQKTIDHYDPKLIVLAG-FMRKLGKAFVS 102 (215)
T ss_dssp GSSSHHHHHHHHHHHHHTTCCSEEEESS-CCSCCCHHHHH
T ss_pred ccCchhHhHHHHHHHHHhcCCCEEEEcc-chhhCCHHHHh
Confidence 23344443 4678899999999877776 34333334443
No 134
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=20.86 E-value=48 Score=29.96 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=34.2
Q ss_pred HHHHHHHHHH-HcCCCEEEEeCCchhHHHHHHHHHHHhhc-CCCceEEEeecccc
Q 008424 176 QFKQATETAV-KLDLDGLVVIGGDDSNTNACLLAEHFRSK-NLKTLVMGCPKTID 228 (566)
Q Consensus 176 ~~~~~~~~l~-~l~Id~LviIGGddS~t~A~~Lae~~~~~-~~~i~VIGVPKTID 228 (566)
+..-+++.++ .-.+|.+|++-||+-++-+ .+.++++ |.++-|+|.|++..
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~pl---v~~lr~~~G~~V~v~g~~~~~s 146 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLL---VERIQQRYNKKVTVYGVPRLTS 146 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHH---HHHHHHHHCCEEEEEECGGGSC
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHH---HHHHHHHcCcEEEEEeCCCcCh
Confidence 4444444432 2569999999999976654 3556665 98888899886443
No 135
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=20.77 E-value=1.1e+02 Score=31.29 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 173 TPEQFKQATETAVKL--DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l--~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++-. +.+.+||-.=
T Consensus 56 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll~-~~~kPVVlTG 108 (328)
T 1wls_A 56 QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLR-NPPIPIVLTG 108 (328)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHEE-SCSSEEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHHh-CCCCCEEEEC
Confidence 678888888888776 79999999999999775555454322 3455666543
No 136
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=20.75 E-value=3.8e+02 Score=26.61 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=59.3
Q ss_pred ChhHHHhhCCcccCC--CeEEEecCCCCccCCCCCcEEEEEeCCCCCchhhHHHHHHHHHHHhhCCCCEEEEEccChhhh
Q 008424 62 NPDEIAKLFPNLFGQ--PSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGI 139 (566)
Q Consensus 62 ~~~~i~~~fp~~~~~--~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL 139 (566)
+.+++++.|..+... =-+++... ..++||+|+.||. ++| +..++++.+.-.-..++..+.-
T Consensus 62 ~~~~L~~~f~~la~~~~m~~~l~~~-------~~~~ri~vl~Sg~----g~n-l~~ll~~~~~g~l~~~i~~Vis----- 124 (288)
T 3obi_A 62 PLASLRTGFGVIAAKFTMGWHMRDR-------ETRRKVMLLVSQS----DHC-LADILYRWRVGDLHMIPTAIVS----- 124 (288)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEET-------TSCEEEEEEECSC----CHH-HHHHHHHHHTTSSCEEEEEEEE-----
T ss_pred CHHHHHHHHHHHHHHcCCEEEeecc-------CCCcEEEEEEcCC----CCC-HHHHHHHHHCCCCCeEEEEEEc-----
Confidence 567777666443321 12344433 2468999999998 233 3445555433222235554442
Q ss_pred cCCCEEecCcccccchhccCCccccccCCCCCCCHHHH-HHHHHHHHHcCCCEEEEeCCchhHHHHHHHH
Q 008424 140 MKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQF-KQATETAVKLDLDGLVVIGGDDSNTNACLLA 208 (566)
Q Consensus 140 l~~~~~eLt~~~v~~~~n~GG~~~LGSsR~k~~~~e~~-~~~~~~l~~l~Id~LviIGGddS~t~A~~La 208 (566)
++- .++..+...=|-...--.+.+ .+.+.+ +++++.+++++.|.+|+.| .+-.-....|.
T Consensus 125 --n~p-----~~~~~~A~~~gIp~~~~~~~~-~~r~~~~~~~~~~l~~~~~Dlivlag-y~~il~~~~l~ 185 (288)
T 3obi_A 125 --NHP-----RETFSGFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHTDLVVLAR-YMQILSDEMSA 185 (288)
T ss_dssp --SSC-----GGGSCCTTTTTCCEEECCCCT-TTHHHHHHHHHHHHHHHTCCEEEESS-CCSCCCHHHHH
T ss_pred --CCC-----hhHHHHHHHcCCCEEEeCCCc-ccHHHHHHHHHHHHHhcCCCEEEhhh-hhhhCCHHHHh
Confidence 110 112222222232222111222 233333 5678999999999777665 55444444443
No 137
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=20.69 E-value=99 Score=28.69 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCc-hhHHHHHHHHHHHhhcCCCceEEEeecc
Q 008424 173 TPEQFKQATETAVKLDLDGLVVIGGD-DSNTNACLLAEHFRSKNLKTLVMGCPKT 226 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l~Id~LviIGGd-dS~t~A~~Lae~~~~~~~~i~VIGVPKT 226 (566)
+++.+.+.++..++.+++.+|.+-|- +.+-+ .++- ....+|||||-.
T Consensus 45 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~ 92 (166)
T 3oow_A 45 TPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--MVAA-----KTTLPVLGVPVK 92 (166)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--HHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--HHHh-----ccCCCEEEeecC
Confidence 67888888888888888877766543 33322 2332 346899999953
No 138
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.62 E-value=1.3e+02 Score=28.16 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCchh--------HHHHHHHHHHHhhcCC
Q 008424 175 EQFKQATETAVKLDLDGLVVIGGDDS--------NTNACLLAEHFRSKNL 216 (566)
Q Consensus 175 e~~~~~~~~l~~l~Id~LviIGGddS--------~t~A~~Lae~~~~~~~ 216 (566)
+.++++++.+++++.+.+++..|... ...-..|++++++.|+
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv 134 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDI 134 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 56889999999999999999888542 4555667777777775
No 139
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=20.47 E-value=1.3e+02 Score=32.04 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEeCCchhHHHHHHHHHHHhhcCCCceEEEee
Q 008424 173 TPEQFKQATETAVKL---DLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCP 224 (566)
Q Consensus 173 ~~e~~~~~~~~l~~l---~Id~LviIGGddS~t~A~~Lae~~~~~~~~i~VIGVP 224 (566)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ +.+.+||-.=
T Consensus 150 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l~-~~~KPVVlTG 203 (438)
T 1zq1_A 150 KPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLR-NLGKPVVLVG 203 (438)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEE-SCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEecCchhHHHHHHHHHHHHh-CCCCCEEEeC
Confidence 567777777777665 89999999999999775555455542 3345666543
No 140
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=20.22 E-value=78 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCchH
Q 008424 311 DYIVDIICKRAELGYNYGVILIPEGLIDFIPE 342 (566)
Q Consensus 311 ~~i~~~I~~R~~~gk~~gvVlIpEGl~e~ipe 342 (566)
+++.+.+.+ +...++||||+|.|.+.+.+++
T Consensus 39 ee~~~~~~~-l~~~~digIIlIte~ia~~i~~ 69 (102)
T 2i4r_A 39 EEIVKAVED-VLKRDDVGVVIMKQEYLKKLPP 69 (102)
T ss_dssp HHHHHHHHH-HHHCSSEEEEEEEGGGSTTSCH
T ss_pred HHHHHHHHH-HhhCCCeEEEEEeHHHHHHHHH
Confidence 344444444 3346799999999998887764
Done!