RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008424
(566 letters)
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 1196 bits (3097), Expect = 0.0
Identities = 493/568 (86%), Positives = 519/568 (91%), Gaps = 3/568 (0%)
Query: 2 SPSLVANADLSPVTSGTVK---GRVASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASS 58
+ +L N + S GR ASVYSE+Q+SRIDHALPLPSVLK PFKIVDGP SS
Sbjct: 1 AAALAVNNGANAAGSSANAPASGRDASVYSEVQSSRIDHALPLPSVLKGPFKIVDGPPSS 60
Query: 59 AAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYD 118
AAGNP+EIAKLFPNLFGQPS +LVP+ ADA+ SD+KLKIGVVLSGGQAPGGHNVISGI+D
Sbjct: 61 AAGNPEEIAKLFPNLFGQPSVMLVPSQADALSSDQKLKIGVVLSGGQAPGGHNVISGIFD 120
Query: 119 YLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFK 178
YLQ+ AKGSVLYGF+GGPAGIMKCKYVELT+ +IYPYRNQGGFDMICSGRDKIETPEQFK
Sbjct: 121 YLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFK 180
Query: 179 QATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPA 238
QA ETA KLDLDGLVVIGGDDSNTNACLLAE+FR+KNLKT V+GCPKTIDGDLK KEVP
Sbjct: 181 QAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPT 240
Query: 239 SFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEE 298
SFGFDTACKIY+EMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEE
Sbjct: 241 SFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEE 300
Query: 299 VAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEV 358
VAAKK TLKNVTDYIVD+ICKRAELGYNYGVILIPEGLIDFIPEVQ LIAELNEILAH+V
Sbjct: 301 VAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPEVQHLIAELNEILAHDV 360
Query: 359 VDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE 418
VDE G WKKKL QSLQLF+FLP AIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE
Sbjct: 361 VDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE 420
Query: 419 NRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGN 478
RKQEG KG FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGN
Sbjct: 421 KRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGN 480
Query: 479 LAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRY 538
LAAPVEEWTV GTALT+LMDVERRHGKFKPVIKKAMVEL+GAPFKKF S+RDEWAL NRY
Sbjct: 481 LAAPVEEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRY 540
Query: 539 ISPGPIQFTGPTSGDVNHTLLLELGAQV 566
ISPGPIQF+GP S NHTL LELGAQ
Sbjct: 541 ISPGPIQFSGPGSDATNHTLKLELGAQA 568
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 903 bits (2335), Expect = 0.0
Identities = 404/551 (73%), Positives = 466/551 (84%), Gaps = 15/551 (2%)
Query: 25 SVYSELQTSRIDHALPLPSVLKNPF---KIVDGPASSAAGNPDEIAKLFPNLFGQPSALL 81
VYS +Q RI++ LPSVLK F KIV+GPA+SAAG+PD +AKLFP +GQPS
Sbjct: 1 MVYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAF 60
Query: 82 VPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK 141
VP DA S KLKIG+VLSGGQAPGGHNVISG++DYL++RAKGS LYGF+GGPAGI+K
Sbjct: 61 VP-DQDAPSSAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILK 119
Query: 142 CKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSN 201
C Y+EL + YI PYRN GGFDMICSGR KIET +QFKQA ETA KLDLD LVVIGGDDSN
Sbjct: 120 CDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSN 179
Query: 202 TNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDAR 261
TNA LLAE+FRSK LKT V+G PKTIDGDLK KE+ SFGFDTA KIY+E+IGNVM DAR
Sbjct: 180 TNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDAR 239
Query: 262 STGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRA 321
STGKY+HFV+LMGR+ASHI LECAL+THPNI II EEV+A+KQTLKN+TDY+VD+ICKRA
Sbjct: 240 STGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRA 299
Query: 322 ELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFE--- 378
ELGYN+GV+L+PEGLI+FIPEV++LIAELNEILA+EVV+ G WKKKLT+QSL+LF+
Sbjct: 300 ELGYNFGVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLP 359
Query: 379 ------FLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKG 432
+AIQEQLMLERDPHGNVQV++IETEK+LIQMVET LE KQ G KGQF G
Sbjct: 360 KGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKGQFMG 419
Query: 433 QSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTA 492
QSHFFGYEGRC P+NFDA YCYALGYGAG LL+SGKTG ISSVGNLAAPVEEWTV G
Sbjct: 420 QSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVP 479
Query: 493 LTALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSG 552
LT LM++ERRHGKFKPVIKKA+V+L+GAPFKKF S+R+EWAL NRYI PGP+Q+TGP+ G
Sbjct: 480 LTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEG 539
Query: 553 --DVNHTLLLE 561
+++HTLLLE
Sbjct: 540 SDELSHTLLLE 550
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 867 bits (2242), Expect = 0.0
Identities = 320/540 (59%), Positives = 391/540 (72%), Gaps = 8/540 (1%)
Query: 30 LQTSRIDHALPLPSVLK---NPFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGA 86
LQ SR+ + LP VL+ + DG ++A + +E+ +LFPN +G P P G
Sbjct: 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEP-GE 59
Query: 87 DAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVE 146
+ + LKIGV+LSGGQAPGGHNVISG++D L+ S LYGF GGP G++ YVE
Sbjct: 60 ASPDEHQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVE 119
Query: 147 LTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACL 206
LT I YRN GGFD+I SGR KIET EQF +A TA KL LDGLV+IGGDDSNTNA L
Sbjct: 120 LTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAAL 179
Query: 207 LAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKY 266
LAE+F LKT V+G PKTIDGDLK + + SFGFDTACKIY+E+IGN+ DA S KY
Sbjct: 180 LAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKY 239
Query: 267 YHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYN 326
+HF+RLMGR+ASHI LECALQTHPN+ IIGEEVAAKK TL +TDYI D+I KRA G N
Sbjct: 240 WHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKN 299
Query: 327 YGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEG--GQWKKKLTKQSLQLFEFLPQAI 384
+GVILIPEGLI+FIPEVQ LI ELN +LA V++EG + KL+ S LFE LP+ I
Sbjct: 300 FGVILIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFI 359
Query: 385 QEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCG 444
+ QL+L+RDPHGNVQV++IETEK+LI++V+TEL RK+EG KG+F SHFFGYEGRC
Sbjct: 360 RHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCA 419
Query: 445 LPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHG 504
P+NFD+ YCYALGY A LL +G TG +S++ NL P EEW G LT +M++ERRHG
Sbjct: 420 FPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERRHG 479
Query: 505 KFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGD--VNHTLLLEL 562
+ KPVIKKA+V+L+G PFKKF S RD+WAL + Y+ PGPIQ+ GP TLLLE
Sbjct: 480 EMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 806 bits (2085), Expect = 0.0
Identities = 303/551 (54%), Positives = 381/551 (69%), Gaps = 16/551 (2%)
Query: 27 YSELQTSRIDHALPLPSVLKNPF---KIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVP 83
S LQ +R+ + LP +L+N KIVDG + + + DE+A+LFPN +G P V
Sbjct: 3 KSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVK 62
Query: 84 NGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCK 143
G+++ S + LK+GV+LSGGQAPGGHNVI+G++D L+ S L+GF GGP G++ K
Sbjct: 63 -GSES--SSKPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGK 119
Query: 144 YVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTN 203
Y+E+T I YRN GGFDMI SGR KIET EQ + ET KL LDGLV+IGGDDSNTN
Sbjct: 120 YIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTN 179
Query: 204 ACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARST 263
A +LAE+F KT V+G PKTIDGDLK + + SFGFDTA K Y+EMIGN+ DA S
Sbjct: 180 AAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSA 239
Query: 264 GKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAEL 323
KY+HF++LMGR+ASHI LECALQTHPNI +I EEVA KK +L+++ YI +I RA
Sbjct: 240 KKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAK 299
Query: 324 GYNYGVILIPEGLIDFIPEVQQLIAELNEILAHE-------VVDEGGQWK-KKLTKQSLQ 375
G NYGVILIPEGLI+FIPE++ LI ELN +LA + ++ KL+ +S +
Sbjct: 300 GKNYGVILIPEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAK 359
Query: 376 LFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSH 435
LF+ LP+ I QL+L+RDPHGNVQV+KIETEK+LI+MV+ ELE K EG KG F SH
Sbjct: 360 LFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVKKELEKLKPEGKYKGPFSAISH 419
Query: 436 FFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTA 495
FFGYEGR P+NFDA YCYALGY A L+ +GKTG +S++ NL +P EW LT
Sbjct: 420 FFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLTM 479
Query: 496 LMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPT--SGD 553
+M++ERRHGK KPVIKKA+V+LDG PFK F RD WAL + Y PGP+Q+ GP
Sbjct: 480 MMNMERRHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELCDQ 539
Query: 554 VNHTLLLELGA 564
TLLLEL
Sbjct: 540 RTLTLLLELNK 550
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 539 bits (1390), Expect = e-178
Identities = 247/522 (47%), Positives = 347/522 (66%), Gaps = 9/522 (1%)
Query: 41 LPSVLKNPFKIVDGPASSAAGNP--DEIAKLFPNLFGQPSALL--VPNGADAVRSDEKLK 96
LP +L++P I + A G +++ FP G + +G+ + + +
Sbjct: 45 LPHILRSPLSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKKFPARR 104
Query: 97 IGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYR 156
IGVVLSGGQA GGHNVI+G+ Y++ + S L+GF GGP G+ +Y ELT + I
Sbjct: 105 IGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGIL 164
Query: 157 NQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNL 216
NQGGF++ICSGR KIET EQ + + E KL L GLVVIGGDDSNTNA +LAE+F+ +
Sbjct: 165 NQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSS 224
Query: 217 KTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRA 276
T+V+GCPKTIDGDLK + + SFG+DTA K Y+E IG++M ++ G Y+FVRLMGR+
Sbjct: 225 STVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRS 284
Query: 277 ASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGL 336
ASHITLEC LQT N+ +IGEE+ + ++L ++ D IV++I KR LG +G++L+PEGL
Sbjct: 285 ASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGL 344
Query: 337 IDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHG 396
I+FIPE + LI ELN IL + Q L+++ LF LP +Q QL+LERDPHG
Sbjct: 345 IEFIPEFETLIKELNLILLKTNDRK--QIIDSLSQEMKTLFLELPSDVQNQLLLERDPHG 402
Query: 397 NVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYA 456
NVQVAKI TE++L+ M + +LE K++ + ++H+FGYEGRC LP+NFDA+YC+A
Sbjct: 403 NVQVAKIATEELLVHMAKEKLEEVKKDYILD---NVKTHYFGYEGRCALPSNFDASYCFA 459
Query: 457 LGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKAMVE 516
LG+ A AL+ + ++G ++ V L+ E+W +G LT +M++E R GK PVIKK +V+
Sbjct: 460 LGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIELRKGKSVPVIKKYLVD 519
Query: 517 LDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTL 558
L G + + +R EW LN+ Y +PGPIQF GP SG N+ +
Sbjct: 520 LKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNYMI 561
Score = 174 bits (441), Expect = 4e-46
Identities = 118/556 (21%), Positives = 224/556 (40%), Gaps = 100/556 (17%)
Query: 98 GVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN---YIYP 154
G++LS PG NVI G+ + L + V G K V+LTS +
Sbjct: 679 GLILSCLSTPGTQNVICGLVNGLPSLKQLIVFKSLSDFYEG--KALKVDLTSEGSLEFFE 736
Query: 155 YR-NQGGFDMICSGRDKIETPEQFKQATETAVKL-------------------------- 187
N GG K+ E K+ + T +K
Sbjct: 737 NSLNSGGCIFPNGVEIKMNVSE--KKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQ 794
Query: 188 -----DLDGLVVIGGDDSNTNACLLAEHFRSKNL-----KTLVMGCPKTIDGDLKCKEVP 237
++ + ++G ++ T L+E +L + V+ P ++ + + +
Sbjct: 795 LLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIE 854
Query: 238 ASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGE 297
GFD+ K + ++GN++ D+ S KY++F++++G S++ LE +QTHPN+ +I E
Sbjct: 855 TCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTHPNLVVIPE 914
Query: 298 EVAAKK----------QTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFI---PEVQ 344
A K TL ++ I DIIC R+ G N+G +L+ EGL D + E +
Sbjct: 915 RYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYR 974
Query: 345 QLIAELNEILAHEVVDEGG---QWKKKLTKQSLQL---FEFLPQAIQEQLM--LERDPHG 396
++ + + + G + L++ ++ F+ + I E+L+ L
Sbjct: 975 KIFSRFSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSR-- 1032
Query: 397 NVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYA 456
++ + TE +L +V+ EL+ R+ + K F + R +P++FD+T
Sbjct: 1033 --KICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCFSFTDQVRACIPSDFDSTLGLM 1090
Query: 457 LGYGAGALLHSGKT-GLISSVGNLAAPVEEWTVSGTALTALMD---------VERRHGKF 506
G A +++S G ++ + + + ++ W + +++LM R +
Sbjct: 1091 YGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLNIEGDKIMDSRNNSNL 1150
Query: 507 KPVIKKAMVE---------------------LDGAPFKKFVSMRDEWALNNRYISPGPIQ 545
KK + E + FK ++ ++W ++N Y +PGPIQ
Sbjct: 1151 SFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQ 1210
Query: 546 FTGPTSGDVNHTLLLE 561
+ N TL
Sbjct: 1211 YFNLFKNLFNRTLFES 1226
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 474 bits (1222), Expect = e-162
Identities = 231/550 (42%), Positives = 328/550 (59%), Gaps = 19/550 (3%)
Query: 28 SELQTSRIDHALPLPSVLKNP-FKIVDGPASSAAGNPDE--IAKLFPNLFGQPSALLVP- 83
S LQ R + LP L+ ++ G A++AA D I++ FP+ +GQP A +
Sbjct: 5 SGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRA 64
Query: 84 --NGADAVRSDEK--LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGI 139
DA E +++GVV G Q+PGGHNVI G++D L+ SVL GF GG G+
Sbjct: 65 TAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGL 124
Query: 140 MKCKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDD 199
K +E+T + + Y+NQGG+D++ +D+I T EQ A L LDGLV+IGG
Sbjct: 125 FAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVT 184
Query: 200 SNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMID 259
SNT+A LAE F KT V+G P T++GDLK + V + GFDT CK+ +++I NV D
Sbjct: 185 SNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 244
Query: 260 ARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICK 319
A S KYY+F+RLMGR ASH+ LECALQ+HPN+ I+GEEVAA K TL ++T I D +
Sbjct: 245 ALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQA 304
Query: 320 RAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEF 379
RAE N+GVILIPEGLI+ IPEV L+ E++ +L V + +L+ + LFEF
Sbjct: 305 RAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVD--NISSQLSPWASALFEF 362
Query: 380 LPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKG-QFKGQSHFFG 438
LP I++QL+L + + Q+++IETEK+L Q+VETE+ R +EG KG +F HFFG
Sbjct: 363 LPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFG 422
Query: 439 YEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMD 498
Y+ R LP+ FD Y Y LG+ +L +G G +++V NL +PV +W +TA+M
Sbjct: 423 YQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMS 482
Query: 499 VERRHGKF-------KPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTS 551
V +R + KP I A V+L G ++ + +++ Y +PGP+QF GP +
Sbjct: 483 V-KRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGA 541
Query: 552 GDVNHTLLLE 561
TL +E
Sbjct: 542 DAKPITLCVE 551
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 444 bits (1143), Expect = e-142
Identities = 226/526 (42%), Positives = 321/526 (61%), Gaps = 14/526 (2%)
Query: 28 SELQTSRIDHALPLPSVLKNPFKIVD---GPASSAAGNPDEIAKLFPNLFGQPSA-LLVP 83
S LQ RI + LP L + ++I++ G + +E+ + NL P +
Sbjct: 107 SPLQYERIKYQPTLPKALASEYQILEENHGDDFINKKDYEEVKRFLKNLHNLPILNVKET 166
Query: 84 NGADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCK 143
N ++ + LKIG++LSGG APGGHNVISGIYDY + + S + GF GG G+
Sbjct: 167 NNHESFKGGNVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKN 226
Query: 144 YVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTN 203
YV +T + + +RN GGF+M+ SGR K+ + KL L+GLV+IGGD SN+N
Sbjct: 227 YVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSN 286
Query: 204 ACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARST 263
A L++E+F + + ++G PKTIDGDLK + + SFGFDTA K Y+E+IGN+ D ++
Sbjct: 287 AALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTG 346
Query: 264 GKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAEL 323
YH VR+MGR+ASH+ LECALQT PNI +IGEEV + +LK++ IV+ I KR L
Sbjct: 347 HNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSL 406
Query: 324 GYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQA 383
NYGVILIPEGLI+F+PE++ LI ELN IL + G + K S ++++FLP
Sbjct: 407 NKNYGVILIPEGLIEFVPEMKILIGELNVIL------KEGPFDASKLKHSREVWDFLPSI 460
Query: 384 IQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRC 443
I++QL+++R+ G +QV KI TE+++I +VE+EL +N QF +H+ GYEGRC
Sbjct: 461 IRDQLLMDRESTGYIQVGKIATERLIIVLVESELAKLNDNNLNI-QF--MAHYLGYEGRC 517
Query: 444 GLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRH 503
+P+NFD YCYALGY A L+ KTG +S + NL W + +M V R +
Sbjct: 518 AIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMHVNRDN 577
Query: 504 -GKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTG 548
GK P +K+ +V+L+ F +R W+L + Y SPGPIQF G
Sbjct: 578 TGKEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNG 623
Score = 329 bits (845), Expect = e-99
Identities = 209/626 (33%), Positives = 314/626 (50%), Gaps = 91/626 (14%)
Query: 7 ANADLSPVTSGTVKGRVAS-----VYSELQTSRIDHALPLPS---------------VLK 46
+ PV +G + +S SELQTSR+ + L LP +
Sbjct: 739 DVLNSEPVNNGFYEQHCSSYKSLGCMSELQTSRLYNKLELPELCSDLKAKVRAGKQYISN 798
Query: 47 NPF---KIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSG 103
+P+ +I+ + N +I ++F + + P + ++KIG+V
Sbjct: 799 DPYTQKQILSNYPHMSYENKFQIQEIFHDKYATPISF-------------EIKIGIVFLS 845
Query: 104 GQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDM 163
QAPG NV+ G+Y L+ KG + + G G++ KY+ + + I + NQGG ++
Sbjct: 846 RQAPGAMNVLCGLYRRLK-LLKGVCIAFY--GLYGLLNNKYIIIDDDNIAKHVNQGGLEL 902
Query: 164 IC-SGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMG 222
S + E + ET L L+GLV+ G + + T A LLAE+F K + T V+G
Sbjct: 903 TGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVG 962
Query: 223 CPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITL 282
P T +L + + GFD++ K+YA +IGNV+ DA S KY+HF+RLMGR+ SH L
Sbjct: 963 IPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVL 1022
Query: 283 ECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPE 342
ECALQTHPN+ II EE A +TL V I D++C RAELG NYG +LIP+ L+ +P
Sbjct: 1023 ECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDALLMHLPH 1082
Query: 343 VQQLIAELNEILAHEVVDEGGQ-------------------------------------W 365
++ L++E+++IL +E GQ W
Sbjct: 1083 MKILLSEISDILND--ANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPW 1140
Query: 366 KKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGV 425
KLT SL L + PQ I ++L L D +++ K+ETE++L+QMV+ EL RKQ+G
Sbjct: 1141 VSKLTPWSLALLKTFPQFIIKEL-LHVDLR-SMRFEKLETEQLLLQMVKEELHQRKQKGK 1198
Query: 426 NKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEE 485
G F G +HFFGY+GR LP+ FD Y+ G+ A ++ SG TG I S+ L +++
Sbjct: 1199 YSGSFMGLTHFFGYQGRSSLPSEFDCKLAYSYGHAASIVIESGLTGYIVSIRGLCGNIKD 1258
Query: 486 WTVSGTALTALMDVERRHGKFK----------PVIKKAMVELDGAPFKKFVSMRDEWALN 535
W + +LM + R K PVI A V+L+G ++ +W +
Sbjct: 1259 WKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSLKIALQKWQME 1318
Query: 536 NRYISPGPIQFTGPTSGDVNHTLLLE 561
+R+ +PGPIQF G S N L E
Sbjct: 1319 DRFCNPGPIQFEGNASNYYNRILFEE 1344
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 391 bits (1006), Expect = e-133
Identities = 134/434 (30%), Positives = 177/434 (40%), Gaps = 97/434 (22%)
Query: 95 LKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYP 154
KIGV+ SGG APG + I G+ A+G +YG G AG+++ EL +
Sbjct: 1 KKIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIYEGYAGLVEGDIKELDWESVSD 58
Query: 155 YRNQGGFDMICSGRDKI-ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRS 213
N+GG +I S R K T E +A E K +D LVVIGGD S T A LL E + S
Sbjct: 59 IINRGGT-IIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPS 117
Query: 214 KNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLM 273
K V+G P TID D+K + GFDTA K E I + A S + V +M
Sbjct: 118 KYQGFNVIGLPGTIDNDIK--GTDYTIGFDTALKTIVEAIDRIRDTASS-HQRTFVVEVM 174
Query: 274 GRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333
GR I LE L T +I I EE AA + +VD+I KR E G +G++
Sbjct: 175 GRHCGDIALEAGLATGADIIFIPEEPAAD-----EWEEEMVDVIKKRRERGKRHGIV--- 226
Query: 334 EGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERD 393
+V EG +F+P
Sbjct: 227 ------------------------IVAEG-------------AIDFIP------------ 237
Query: 394 PHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDATY 453
K TEK+L ++VE L F ++ G+ R G PT FD
Sbjct: 238 --------KPITEKLLAKLVEERL-----------GFDTRATVLGHVQRGGTPTAFDRIL 278
Query: 454 CYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKA 513
LG A LL G G + NL E V LT +++ +R G
Sbjct: 279 ASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPLTEAVNMTKRVG--------- 325
Query: 514 MVELDGAPFKKFVS 527
V+L+G PFKKF
Sbjct: 326 -VDLEGRPFKKFAK 338
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 271 bits (696), Expect = 1e-86
Identities = 110/433 (25%), Positives = 162/433 (37%), Gaps = 89/433 (20%)
Query: 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYI 152
KI ++ SGG APG + VI + +G ++G G G+++ LT +
Sbjct: 1 MMKKIAILTSGGDAPGMNAVIRAVVRTA--IKEGLEVFGIYNGYLGLLEGDIKPLTREDV 58
Query: 153 YPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFR 212
N+GG + + + +T E K A E KL +D LVVIGGD S T A LLAE
Sbjct: 59 DDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG- 117
Query: 213 SKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRL 272
V+G PKTID D+ + + GFDTA + E I N+ D S+ + V +
Sbjct: 118 ----GIPVVGVPKTIDNDISGTDF--TIGFDTALETAVEAIDNLR-DTASSHERIFIVEV 170
Query: 273 MGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILI 332
MGR A + L L T +I +I EE A + + I +I KR G + +I+
Sbjct: 171 MGRHAGWLALAAGLATGADIILIPEEPADLI-----IEELIAEIKAKREARGKKHAIIV- 224
Query: 333 PEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLER 392
+ E + +
Sbjct: 225 ---------------------------------------------------VAEGAIDQI 233
Query: 393 DPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFGYEGRCGLPTNFDAT 452
+G +A IE E + G F+ + G+ R G P+ FD
Sbjct: 234 GENGAELLAAIE------------------ELLALGDFETRVTVLGHIQRGGTPSAFDRV 275
Query: 453 YCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKK 512
LG A LL GKTG + + N + L +M +E IK
Sbjct: 276 LASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMVMSLEE----PDRSIKL 331
Query: 513 AMVELDGAPFKKF 525
+V+L F
Sbjct: 332 DLVDLAKRLGIYF 344
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 115 bits (291), Expect = 2e-28
Identities = 77/274 (28%), Positives = 119/274 (43%), Gaps = 45/274 (16%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRA---KGSVLYGFRGGPAGIMKCKYVELTSNYI 152
+IGV+ SGG APG + I + R +G +YG G AG+++ V+L +
Sbjct: 3 RIGVLTSGGDAPGMNAAIRAVV-----RTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSV 57
Query: 153 YPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHF 211
N+GG ++ S R + E +A E KL +D LVVIGGD S A L EH
Sbjct: 58 SDIINRGG-TILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH- 115
Query: 212 RSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDA----RSTGKYY 267
+ V+G P TID D+ + + GFDTA N ++A R T +
Sbjct: 116 ---GIP--VIGLPGTIDNDIAGTDY--TIGFDTAL--------NTAVEAIDRLRDTASSH 160
Query: 268 H---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELG 324
V +MGR A + L + + +I E ++ + I K E G
Sbjct: 161 ERVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPFDIEE--------LCAKIKKGRERG 212
Query: 325 YNYGVILIPEGLIDFIPEVQQLIAELNEILAHEV 358
+ +I++ EG++ ++L E+ E E
Sbjct: 213 KKHAIIVVAEGVMP----AEELAKEIEERTGLET 242
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 97.0 bits (242), Expect = 5e-22
Identities = 75/266 (28%), Positives = 112/266 (42%), Gaps = 68/266 (25%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTS- 149
+IGV+ GG PG + VI I +Y G + G R G G+++ V L
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEY------GWEVIGIRDGWRGLLEGDTVPLLDL 54
Query: 150 ---NYIYPYRNQGG----------FDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIG 196
I P +GG F G DKI K +L LD L+ IG
Sbjct: 55 EDVRGILP---RGGTILGSSRTNPFKYEEDGDDKIV--ANLK-------ELGLDALIAIG 102
Query: 197 GDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNV 256
GD + A LA+ K L V+G PKTID DL+ + +FGFDTA +I E + +
Sbjct: 103 GDGTLGIARRLAD----KGLP--VVGVPKTIDNDLEATDY--TFGFDTAVEIATEALDRL 154
Query: 257 MIDARSTGKYYH---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYI 313
+T + +H V +MGR A I L + ++ +I E +
Sbjct: 155 ----HTTAESHHRVMVVEVMGRHAGWIALHSGIAGGADVILIPE------------IPFD 198
Query: 314 VDIICK----RAELGYNYGVILIPEG 335
+D +C+ R G + ++++ EG
Sbjct: 199 IDSVCEKVRERFARGKRFAIVVVAEG 224
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 94.0 bits (234), Expect = 4e-21
Identities = 77/265 (29%), Positives = 115/265 (43%), Gaps = 27/265 (10%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
+IGV+ SGG APG + I G+ A+G +YG R G AG++ V L +
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGVVR--SAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDI 59
Query: 156 RNQGGFDMICSGR-DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH-FRS 213
N+GG + S R + + E +A E K +D LVVIGGD S A L EH F
Sbjct: 60 INRGG-TFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFP- 117
Query: 214 KNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLM 273
+G P TID D+ + + GFDTA E I + + S + V +M
Sbjct: 118 ------CVGLPGTIDNDIPGTD--YTIGFDTALNTVVEAIDRIRDTSSSHQRIS-VVEVM 168
Query: 274 GRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333
GR I L + +I E +++ + + I E G + ++++
Sbjct: 169 GRHCGDIALAAGIAGGAEFIVIPEAEFDREE--------VANRIKAGIERGKKHAIVVVA 220
Query: 334 EGLIDFIPEVQQLIAELNEILAHEV 358
EG+ D V +L E+ E E
Sbjct: 221 EGVYD----VDELAKEIEEATGFET 241
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 91.2 bits (227), Expect = 2e-20
Identities = 74/265 (27%), Positives = 114/265 (43%), Gaps = 24/265 (9%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
KIGV+ SGG APG + I + A+G +YG G AG++ +L +
Sbjct: 2 KIGVLTSGGDAPGMNAAIRAVVR--SAIAEGLEVYGIYEGYAGLVAGNIKQLDWESVSDI 59
Query: 156 RNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNA-CLLAEHFRS 213
+GG I S R E +A E K +D LVVIGGD S T A L +EH
Sbjct: 60 IQRGG-TFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSEH--G 116
Query: 214 KNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLM 273
N +G P TID D+ + + GFDTA E I + A S + + V +M
Sbjct: 117 FN----CVGLPGTIDNDICGTD--YTIGFDTALNTIVEAIDRIRDTASSHQRTF-VVEVM 169
Query: 274 GRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIP 333
GR + L + + I E A + + + + + + E G + ++++
Sbjct: 170 GRHCGDLALVAGIAGGADYIFIPE--APFWE------EELCNRLKRGRERGKRHNIVIVA 221
Query: 334 EGLIDFIPEVQQLIAELNEILAHEV 358
EG ID P + + +L ++
Sbjct: 222 EGAID--PITSEFVKKLVVEGGYDT 244
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 90.9 bits (226), Expect = 4e-20
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 20/243 (8%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
KIG++ SGG APG + I + G +YG R G G++ K L S +
Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRTAI--YHGFEVYGIRRGYKGLINGKIEPLESKNVSGI 58
Query: 156 RNQGGFDMICSGR-DKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSK 214
++GG ++ + R + +T E ++A E KL ++GLVVIGGD S T A L E
Sbjct: 59 IHRGG-TILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIP 117
Query: 215 NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMG 274
V+G P TID D+ + + GFDTA + + + A S + + + +MG
Sbjct: 118 -----VIGLPGTIDNDIPGTDY--TIGFDTALNTIIDAVDKIRDTATSHERAF-VIEVMG 169
Query: 275 RAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPE 334
R A + L + T I II E D ++ + ++ E G + +I++ E
Sbjct: 170 RHAGDLALYAGIATGAEIIIIPE--------FDYDIDELIQRLKEQHEAGKKHSIIIVAE 221
Query: 335 GLI 337
G I
Sbjct: 222 GNI 224
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 92.0 bits (229), Expect = 9e-20
Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 17/244 (6%)
Query: 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYI 152
+++K G+V GG PG + VI + L + +YG + G G+ K +++L +
Sbjct: 86 KEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDV 145
Query: 153 YPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFR 212
GG + S K +T ++ ++ L +GGD ++ A + + R
Sbjct: 146 KTIHRLGGTILGSS-----RGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELR 200
Query: 213 SKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRL 272
+ L V+G PKTID D+ + SFGF TA + I ++A+S V+L
Sbjct: 201 RRKLNISVVGIPKTIDNDIPIID--ESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKL 258
Query: 273 MGRAASHITLECALQT-HPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVIL 331
MGR + I L ++ + N+ +I E L+ V +YI + K+ VI+
Sbjct: 259 MGRDSGFIALHASVASADVNVCLIPE----FDIPLEGVLEYIEQRLQKKGHC-----VIV 309
Query: 332 IPEG 335
+ EG
Sbjct: 310 VAEG 313
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 76.4 bits (189), Expect = 8e-15
Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 11/208 (5%)
Query: 94 KLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAG-IMKCKY--VELTSN 150
K+K +V GG PG ++VI I L + G R G G I + + VELT
Sbjct: 80 KVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPE 139
Query: 151 YIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEH 210
+ GG ++ S R P+ ++ +T +++++ L VIGGD + A +AE
Sbjct: 140 VVADIHEFGG-TILGSSRG----PQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEE 194
Query: 211 FRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFV 270
+ LK V+G PKTID D+ + SFGF+TA + E I ++A V
Sbjct: 195 IERRGLKISVIGIPKTIDNDINF--IQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLV 252
Query: 271 RLMGRAASHITLECAL-QTHPNITIIGE 297
+LMGR + I AL N +I E
Sbjct: 253 KLMGRHSGFIAAYAALASKDVNFVLIPE 280
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 64.1 bits (156), Expect = 6e-11
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVL---YGFRGGPAGIMKCKYVELTS 149
E++K +V GG PG ++VI I L+ +++ +G+RG + + L+
Sbjct: 52 EEVKAAIVTCGGLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLS--EMPLSR 109
Query: 150 NYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209
+ GG ++ R +T + ++ ++ L V+GG+ ++ A +
Sbjct: 110 KVVQNIHLSGG-SLLGVSRGGAKTSD----IVDSIEARGINMLFVLGGNGTHAGANAIHN 164
Query: 210 HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH- 268
R + +K V+G PKTID D+ + +FGFDTA + I + I+A S YH
Sbjct: 165 ECRKRKMKVSVVGVPKTIDNDILLMD--KTFGFDTAVEEAQRAINSAYIEAHSA---YHG 219
Query: 269 --FVRLMGRAASHITLECALQT-HPNITIIGE 297
V+LMGR++ I + +L + +I +I E
Sbjct: 220 IGLVKLMGRSSGFIAMHASLASGQVDICLIPE 251
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 63.6 bits (155), Expect = 1e-10
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 8/197 (4%)
Query: 90 RSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTS 149
SDE ++ +V GG PG + VI I L + + G GG G + LT
Sbjct: 84 ESDE-VRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTP 142
Query: 150 NYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209
+ +GG ++ + R +T + ++ ++ + +IGGD + A ++ E
Sbjct: 143 KVVNDIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGASVIYE 197
Query: 210 HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHF 269
R + LK V G PKTID D+ + SFGFDTA + I ++A S
Sbjct: 198 EIRRRGLKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQRAINAAHVEAESVENGIGL 255
Query: 270 VRLMGRAASHITLECAL 286
V+LMGR + I + L
Sbjct: 256 VKLMGRYSGFIAMYATL 272
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 62.0 bits (151), Expect = 3e-10
Identities = 76/259 (29%), Positives = 111/259 (42%), Gaps = 39/259 (15%)
Query: 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSV---LYGFRGGPAGIMK--CKYVEL 147
EK +IG++ SGG G + VI + RA+G+ + G R G+M +Y+EL
Sbjct: 3 EKKRIGILTSGGDCAGLNAVIRAVVH----RARGTYGWEVIGIRDATQGLMARPPQYIEL 58
Query: 148 TSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAV-----------KLDLDGLVVIG 196
+ + GG + G P F + L LD L+ IG
Sbjct: 59 DLDQVDDLLRMGGTIL---GTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIG 115
Query: 197 GDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNV 256
GD S LA+ NL +G PKTID D+ EV S GFDTA I E + +
Sbjct: 116 GDGSLAILRRLAQQ-GGINL----VGIPKTIDNDVGATEV--SIGFDTAVNIATEALDRL 168
Query: 257 MIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDI 316
A S + + +MGR A HI L + ++ +I E TL+NV
Sbjct: 169 HFTAASHNRVM-ILEVMGRDAGHIALAAGIAGGADVILIPE----IPYTLENVC----KK 219
Query: 317 ICKRAELGYNYGVILIPEG 335
I +R E G N+ ++++ E
Sbjct: 220 IRERQEEGKNFCLVVVSEA 238
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 49.6 bits (119), Expect = 2e-06
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 184 AVKLDLDGLVV---IGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVP--A 238
A +L DG+ + IGGDD+NT A LA + V+G PKTID D+ VP
Sbjct: 105 AERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDV----VPIRQ 160
Query: 239 SFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECA 285
S G TA + A NV+ + + + +MGR +T A
Sbjct: 161 SLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATA 207
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 48.1 bits (115), Expect = 1e-05
Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 52/292 (17%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMK--CKYVELT 148
+I V+ SGG A G + + IY G +Y R G G++ E
Sbjct: 2 RIAVLTSGGDAQGMNAAVRAVVRMAIY-------VGCRVYAIREGYQGLVDGGDNIEEAQ 54
Query: 149 SNYIYPYRNQGGFDMICSGRDK--IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNA-- 204
+ + GG +I + R K E P + K A V +D LVVIGGD S T A
Sbjct: 55 WEDVRGILSLGG-TIIGTARCKEFRERPGRLK-AARNLVSNGIDALVVIGGDGSLTGADL 112
Query: 205 ------CLLAEHFRSKNLKT---------LVMGCPKTIDGDLKCKEVPASFGFDTACKIY 249
LL E + + ++G +ID D + G D+A
Sbjct: 113 FREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDND--MCGTDMTIGADSALHRI 170
Query: 250 AEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNV 309
E I + A+S + + V +MGR ++ L A+ T + I E +
Sbjct: 171 CEAIDAISSTAQSHQRAF-VVEVMGRHCGYLALMAAIATGADYVFIPERPPE-----EGW 224
Query: 310 TDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDE 361
D + + + + G ++++ EG ID +LN I + +V D
Sbjct: 225 EDQLCHKLKRNRKAGKRKTIVIVAEGAID---------RDLNPITSEDVKDV 267
Score = 36.5 bits (85), Expect = 0.034
Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 25/267 (9%)
Query: 91 SDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN 150
+L+I ++ G A G + Y A+G + G +G+ + ELT +
Sbjct: 386 EASRLRIAIIHVGAPAGGMNAATRSAVRYAL--ARGHTVIAIHNGFSGLARHDVRELTWS 443
Query: 151 YIYPYRNQGGFDM----ICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACL 206
+ + +GG ++ G D F+Q +DGL++IGG ++
Sbjct: 444 DVEGWVGEGGSELGTNRSLPGDDLGTIAYYFQQ-------HKIDGLIIIGGFEAFEALYQ 496
Query: 207 LAEHFRSK--NLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTG 264
L R K + ++ P TI ++ E S G DTA E N+ A ++
Sbjct: 497 LDAA-REKYPAFRIPMVVIPATISNNVPGTEY--SLGSDTALNEITEYCDNIKQSASASK 553
Query: 265 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELG 324
+ V MG + ++ L T + I EE + K ++ ++ + + G
Sbjct: 554 RRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGISLKDLQED-----IEHLKETFAEG 608
Query: 325 YNYGVILIPEGLIDFI--PEVQQLIAE 349
+IL E + ++I+E
Sbjct: 609 RAGKLILRNEKASKVYTTDFIARIISE 635
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 47.1 bits (112), Expect = 2e-05
Identities = 64/274 (23%), Positives = 103/274 (37%), Gaps = 53/274 (19%)
Query: 96 KIGVVLSGGQAPGGHN-----VISGIYDYLQDRAKGSVLYGFRGGPAGI------MKCKY 144
I V+ SGG A G + V GIY G+ ++ G G+ +K
Sbjct: 5 AIAVLTSGGDAQGMNAAVRAVVRMGIY-------VGAKVFFVYEGYEGLVKGGDYIKQAE 57
Query: 145 VELTSNYIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTN 203
E SN++ Q G +I S R K E QA ++ + L VIGGD S T
Sbjct: 58 WESVSNWL-----QEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTG 112
Query: 204 ACLL-------------------AEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDT 244
A L E + ++L ++G +ID D + + G D+
Sbjct: 113 ADLFRSEWPSLLEELVKDGKITEEEVAKYQHLN--IVGMVGSIDNDFCGTD--MTIGTDS 168
Query: 245 ACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQ 304
A E++ + A+S + + + +MGR ++ L L T + I E
Sbjct: 169 ALHRICEVVDAITTTAQSHQRTF-VLEVMGRHCGYLALVSGLATGADWIFIPERPPEDGW 227
Query: 305 TLKNVTDYIVDIICKRAELGYNYGVILIPEGLID 338
D + + + G +I++ EG ID
Sbjct: 228 -----EDQMCRRLSEHRSRGKRLNIIIVAEGAID 256
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 39.8 bits (94), Expect = 0.003
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 18/169 (10%)
Query: 130 YGFRGGPAGIMKCKYVELT---SNYIYPYRNQ--GGFDMICSGRDKI----ETPEQFKQA 180
YG R G GI+ ++L+ + + G S R K+ E ++++
Sbjct: 39 YGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALG---SCRYKLKSLEEDRAEYERL 95
Query: 181 TETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASF 240
E D+ GG+DS A +++ + +G PKTID DL +
Sbjct: 96 LEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTD--HCP 153
Query: 241 GFDTACKIYAEMIGNVMIDARS---TGKYYHFVRLMGRAASHITLECAL 286
GF +A K A + +D + T K + + +MGR A + AL
Sbjct: 154 GFGSAAKYIATSVLEAALDVAAMANTSKVF-ILEVMGRHAGWLAAAAAL 201
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 33.1 bits (76), Expect = 0.32
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 340 IPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFE----FLPQAIQEQLMLERDPH 395
I E ++L E E + + + K+ + + FE +A +E L +
Sbjct: 32 IKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEAS 91
Query: 396 GNVQVAKIETEKMLIQM---VETELENRKQEGVNKGQFKGQSHFF 437
++ +++ E+ + +E +E K EG +G KG+
Sbjct: 92 SIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGL 136
>gnl|CDD|221406 pfam12070, DUF3550, Protein of unknown function (DUF3550/UPF0682).
This family of proteins is functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 249 to 606 amino acids in
length.
Length = 512
Score = 33.2 bits (76), Expect = 0.44
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 49 FKIVDGPASSAAGNPDEIAKLFPNLFGQPSA-LLVPNGADAVRSDEKL 95
F I+D S+A K F NLFGQP LL P A D+ L
Sbjct: 382 FIIIDSDNSTAF-------KNFTNLFGQPLVCLLSPTSYPAGVQDDTL 422
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 31.9 bits (73), Expect = 0.83
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 167 GRDKIETPEQFKQATETAVKLDLDGLVVI-----GGDDSNTNACLLAEHFRSKNLKT--L 219
+ + ++ + E AVK L V + GG DS+ A + + T +
Sbjct: 227 TDSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSI 286
Query: 220 VMGCPKTIDGDLKCKEVPASFGFD 243
D ++V G +
Sbjct: 287 GFEGSPDFDESPYARKVADHLGTE 310
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 31.3 bits (71), Expect = 1.4
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 85 GADAVRSDEKL--KIGVVLSGGQAPGGHNVISGIYDYLQD 122
GA A +D KL KIGV G PG ++++G+YD +D
Sbjct: 50 GALAAAADAKLTGKIGVCF-GSAGPGATHLLNGLYDAKED 88
>gnl|CDD|235007 PRK02134, PRK02134, hypothetical protein; Provisional.
Length = 249
Score = 30.7 bits (70), Expect = 1.6
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 263 TGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQ 304
+Y F+ L GR +H+ + P I I AA+
Sbjct: 106 AAQYERFLSLFGRKPTHLDSHHHVHMLPQIFPIVARFAAEYG 147
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 30.4 bits (69), Expect = 3.2
Identities = 15/125 (12%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 298 EVAAKKQTLKN-VTDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAH 356
+ ++ L N + + +C + IL + + +P+V +++ L E++
Sbjct: 276 GLRGVRRRLNNSLNKLCLTQMCASILSSLS---ILALDADFNQLPDVTEILENLEEVVKA 332
Query: 357 EVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETE-KMLIQMVET 415
+ + ++ FE +P ++ Q + + T+ K + + +
Sbjct: 333 DF--------SSIVQEGNSTFEEIPSKVKNQTSSVVPDVKA-ALDSLGTDIKSVAEDLPL 383
Query: 416 ELENR 420
++ +
Sbjct: 384 QVLSV 388
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide adenine
dinucleotide (NAD+) biosynthesis, an amide transfer from
either ammonia or glutamine to nicotinic acid adenine
dinucleotide (NaAD). The conversion of NaAD to NAD+
occurs via an NAD-adenylate intermediate and requires
ATP and Mg2+. The intemediate is subsequently cleaved
into NAD+ and AMP. In many prokaryotes, such as E. coli
, NAD synthetase consists of a single domain and is
strictly ammonia dependent. In contrast, eukaryotes and
other prokaryotes have an additional N-terminal
amidohydrolase domain that prefer glutamine,
Interestingly, NAD+ synthases in these prokaryotes, can
also utilize ammonia as an amide source .
Length = 248
Score = 29.4 bits (67), Expect = 4.0
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 193 VVI---GGDDSNTNACLLAEHFRSKNLKTLVMGCPKTIDGDLKC-KEVPASFG 241
VV+ GG DS A L +N+ L M + + + KE+ + G
Sbjct: 26 VVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALG 78
>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid;
Reviewed.
Length = 436
Score = 29.7 bits (68), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 285 ALQTHPNITIIGEEVAA 301
AL+ HP IT+I EEV
Sbjct: 108 ALENHPLITVIREEVTE 124
>gnl|CDD|233820 TIGR02320, PEP_mutase, phosphoenolpyruvate phosphomutase. This
family consists of examples of phosphoenolpyruvate
phosphomutase, an enzyme that creates a C-P bond as the
first step in the biosynthesis of natural products
including antibiotics like bialaphos and
phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for phosphonopyruvate decarboxylase (aepY).
Since the PEP phosphomutase reaction favors the
substrate PEP energetically, the decarboxylase is
required to drive the reaction in the direction of
phosphonate production. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP). A closely related enzyme,
phosphonopyruvate hydrolase from Variovorax sp. Pal2, is
excluded from this model.
Length = 285
Score = 29.6 bits (67), Expect = 4.3
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 256 VMIDARSTGKYYHFVRLMGRA----ASHITLE--CALQTHPNITIIGEEVAAKKQTLKNV 309
+++D + G + HF RL+ + S + +E L+ + ++ G +VA Q +V
Sbjct: 81 IILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKN---SLFGNDVA---QPQASV 134
Query: 310 TDYIVDI-ICKRAELGYNYGVILIPEGLI 337
++ I K A+ ++ +I E LI
Sbjct: 135 EEFCGKIRAGKDAQTTEDFMIIARVESLI 163
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 29.4 bits (67), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 285 ALQTHPNITIIGEEVAAKK 303
LQ HPN+T+I +E AA +
Sbjct: 213 ILQLHPNVTVILDEAAASE 231
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum) have
a conserved pathway from two molecules geranylgeranyl-PP
to one of all-trans-lycopene. Members of this family are
the enzyme pytoene desaturase (also called phytoene
dehydrogenase). This model does not include the region
of the chloroplast transit peptide in plants. A closely
related family, excluded by this model, is zeta-carotene
desaturase, another enzyme in the same pathway
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 453
Score = 29.8 bits (67), Expect = 4.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 25 SVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPD---------EIAKLFPNLFG 75
SVY+++ + ++A P S+L+ +V PA+ G D E+AKLFPN
Sbjct: 328 SVYADMSETCKEYADPDKSMLE----LVFAPAADWIGRSDEEIIDATMAELAKLFPNHIK 383
Query: 76 --QPSALL 81
P+ +L
Sbjct: 384 ADSPAKIL 391
>gnl|CDD|236835 PRK11069, recC, exonuclease V subunit gamma; Provisional.
Length = 1122
Score = 29.9 bits (68), Expect = 5.2
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 342 EVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLER--DPHGNVQ 399
E LIAEL LA ++ + W++ L Q L E+LP Q +L+ P
Sbjct: 552 ESSGLIAELAGHLAS-LLMQLNIWRRGLA-QPRPLEEWLPVCRQ---LLDDFFLPDA--- 603
Query: 400 VAKIETEKMLIQMVETELENRKQEGVNKG 428
ETE L ++E + + +EG++
Sbjct: 604 ----ETEAALA-LIEQQWQAIIEEGLDAQ 627
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase; Provisional.
Length = 387
Score = 29.1 bits (66), Expect = 7.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 161 FDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGG-DDSNTNACLLAEHFRSKNLKT 218
F+ IC T E+ + A + V+ LD +VVIGG + SNT L E + + +
Sbjct: 267 FNTICDA-----TQER-QDAMFSLVEEPLDLMVVIGGYNSSNTTH--LQEIAIERGIPS 317
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
In prokaryotes, the incorporation of selenocysteine as
the 21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes the
elongation factor SelB, a close homolog rf EF-Tu. It may
function by replacing EF-Tu. A C-terminal domain not
found in EF-Tu is in all SelB sequences in the seed
alignment except that from Methanococcus jannaschii.
This model does not find an equivalent protein for
eukaryotes [Protein synthesis, Translation factors].
Length = 581
Score = 29.1 bits (65), Expect = 7.3
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 349 ELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKM 408
+ +L VD G +W K+LT + P I+ E G V+V KI +
Sbjct: 360 CIFLLLERGAVDLGLEWFKQLTGILIMRLLLPPTTIRICGFGENIDFGEVEVKKILVK-- 417
Query: 409 LIQMVETELENRKQEGVNKGQFKG 432
+ TE + +GV+K + +
Sbjct: 418 ----LGTEQHD--VKGVDKERLER 435
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 29.0 bits (65), Expect = 8.7
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 90 RSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVE 146
+S KL + VV SG PG N I+GI D + D V G + AGI K + E
Sbjct: 69 KSTGKLGVAVVTSG---PGATNAITGIADAMSDSVPLLVFTG-QVARAGIGKDAFQE 121
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 28.5 bits (64), Expect = 8.7
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 343 VQQL----IAELNEILAHEVVDEGGQWKKKLTKQSLQLFEFLPQ--AIQEQLMLERDPHG 396
QQL + + E E ++ + K+ L K++ Q+ ++ QL L D
Sbjct: 168 EQQLNDAKLEQAQEQAEQEQ-EKHKREKEILLKEAAQVSTLKETEKELRAQLNLYSDKFK 226
Query: 397 NVQVA-----------KIETEKMLIQMVETELEN----RKQEGVNK 427
Q K E EKM ++ + E EN RK E NK
Sbjct: 227 EFQDTLNKSNEVFLTFKQEMEKMSKKIKKLEKENLAWKRKWEKSNK 272
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,219,683
Number of extensions: 2929942
Number of successful extensions: 2750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2672
Number of HSP's successfully gapped: 53
Length of query: 566
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 464
Effective length of database: 6,413,494
Effective search space: 2975861216
Effective search space used: 2975861216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)