RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008424
(566 letters)
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 691 bits (1785), Expect = 0.0
Identities = 253/552 (45%), Positives = 357/552 (64%), Gaps = 17/552 (3%)
Query: 28 SELQTSRIDHALPLPSVLKNPF---KIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPN 84
S + R + LP++LK F +V G + A + + + F N +G P
Sbjct: 4 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTE- 62
Query: 85 GADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKY 144
G ++ + L IG++LSGG APGGHNVISG++D ++ S L+GF+GGP G+++
Sbjct: 63 GESSLSFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDK 122
Query: 145 VELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNA 204
+ELT + I YRN GGFD++ SGR KIET E + +A A + +L+ +++IGGDDSNTNA
Sbjct: 123 IELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNA 182
Query: 205 CLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTG 264
+LAE+F+ V+G PKTID DL+ + SFGFD+A KIY+E+IGN+ DA ST
Sbjct: 183 AILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 242
Query: 265 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELG 324
KY+HFV+LMGR+ASH+ LECAL+THPNI I+ EEV AKK+TL + D +V +I KR+ G
Sbjct: 243 KYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNG 302
Query: 325 YNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGG--------QWKKKLTKQSLQL 376
N+GV+++PEGLI+FIPEV+ L+ EL +I + G + KL+ +
Sbjct: 303 DNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGV 362
Query: 377 FEFLPQAIQEQL---MLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQ 433
+ LP IQ +L +LERDPHGN V+++ TEK+ I+M+++ L + K+ G KG F
Sbjct: 363 YLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPV 422
Query: 434 SHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493
HFFGYEGR P+NFD+ YCY+LGY A L+ +G TG +S + NL +W G L
Sbjct: 423 DHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPL 482
Query: 494 TALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGD 553
T LM++E R+G+ KPVIKKA+V+L+G PFK+FV RD+WALNN Y+ PGP+Q+ G +
Sbjct: 483 TMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIV 542
Query: 554 --VNHTLLLELG 563
+ TL LEL
Sbjct: 543 DEITETLKLELF 554
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 125 bits (316), Expect = 4e-31
Identities = 78/402 (19%), Positives = 136/402 (33%), Gaps = 108/402 (26%)
Query: 93 EKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMK---CKYVELTS 149
+ IG+V GG PG ++VI I + + GFR G G+ K +EL
Sbjct: 96 TETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHR 155
Query: 150 NYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209
+ + GG ++ S R P+ K+ +T +L ++ L +GGD + A ++++
Sbjct: 156 GRVTNIHHYGG-TILGSSR----GPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQ 210
Query: 210 HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH- 268
+ + + V G PKTID DL +FGF TA + + I A + +
Sbjct: 211 EAKRRGVDISVFGVPKTIDNDLSFSHR--TFGFQTAVEKAVQAIRA----AYAEAVSANY 264
Query: 269 ---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGY 325
V+LMGR + I + A + +A
Sbjct: 265 GVGVVKLMGRDSGFIAAQAA------------------------------VASAQAN--- 291
Query: 326 NYGVILIPEGLIDFIPEVQQLIAELNEILAHE-----VVDEGGQWKKKLTKQSLQLFEFL 380
+ L+PE Q++++ L H +V EG
Sbjct: 292 ---ICLVPE--NPI--SEQEVMSLLERRFCHSRSCVIIVAEG------------------ 326
Query: 381 PQAIQEQLM--LERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFG 438
Q+ D GN ++ I + +++ + ++
Sbjct: 327 --FGQDWGRGSGGYDASGNKKLIDIGVI------LTEKVKAFLKANKSRY--------PD 370
Query: 439 YEGRC---------GLPTNFDATYCYALGYGAGALLHSGKTG 471
+ P+ DA +C L A +G TG
Sbjct: 371 STVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATG 412
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 118 bits (298), Expect = 4e-29
Identities = 66/428 (15%), Positives = 126/428 (29%), Gaps = 91/428 (21%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVL--YGFRGGPAGIMKCKYVELTS---N 150
SGG + +G+ + + + G + Y R G G + ++
Sbjct: 5 NAFYAQSGGVTAVINASAAGVIEAARKQ-SGKIGRIYAGRNGIIGALTEDLIDTGQESDA 63
Query: 151 YIYPYRNQGGFDMICSGRDKI----ETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACL 206
I R S R K+ + ++++ E D+ GG DS
Sbjct: 64 AISALRYTPS-GAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLK 122
Query: 207 LAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTG-- 264
+++ + + PKT+D DL + GF + K A D S
Sbjct: 123 VSQLSGTLGYPIQAIHVPKTVDNDLPITDC--CPGFGSVAKYIAVSTLEASFDVASMSAT 180
Query: 265 -KYYHFVRLMGRAASHITLECAL-----QTHPNITIIGEEVAAKKQTLKNVTDYIVDIIC 318
+ +MGR A I L + P + + E + +
Sbjct: 181 STKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEI--------SFDKQKFLAKVD 232
Query: 319 KRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLFE 378
+ Y +++ EG V + G++
Sbjct: 233 SCVKKFG-YCSVVVSEG----------------------VKGDDGKFLSD---------- 259
Query: 379 FLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVE--TELENRKQEGVNKGQFKGQSHF 436
RD G+ Q+ + ++ MV+ L+
Sbjct: 260 ----------QGVRDAFGHAQLGGVA--PVVASMVKEGLGLKYHWGV------------- 294
Query: 437 FGYEGRCG--LPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALT 494
Y R + + D YA+G A G ++ ++ ++A +W V L+
Sbjct: 295 ADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLS 354
Query: 495 ALMDVERR 502
+ +VE+
Sbjct: 355 QVANVEKM 362
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 116 bits (292), Expect = 6e-29
Identities = 70/272 (25%), Positives = 105/272 (38%), Gaps = 41/272 (15%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN 150
KIGV+ SGG APG + I S + +G + G G G+ + + V+L
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALT-------EGLEVMGIYDGYLGLYEDRMVQLDRY 56
Query: 151 YIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209
+ N+GG + S R A E K +D LVVIGGD S A L E
Sbjct: 57 SVSDMINRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE 115
Query: 210 HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH- 268
+G P TID D+K + + GF TA E I + R T +
Sbjct: 116 M----GFP--CIGLPGTIDNDIKGTDY--TIGFFTALSTVVEAIDRL----RDTSSSHQR 163
Query: 269 --FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYN 326
V +MGR +TL A+ ++ E + + +V+ I G
Sbjct: 164 ISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEV--------EFSREDLVNEIKAGIAKGKK 215
Query: 327 YGVILIPEGLIDFIPEVQQLIAELNEILAHEV 358
+ ++ I E + D V +L + + E
Sbjct: 216 HAIVAITEHMCD----VDELAHFIEKETGRET 243
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 112 bits (283), Expect = 1e-27
Identities = 68/272 (25%), Positives = 107/272 (39%), Gaps = 41/272 (15%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN 150
+IGV+ SGG +PG + + IY +YG G AG++ K +L
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIY-------HDVEVYGIYNGYAGLISGKIEKLELG 55
Query: 151 YIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209
+ ++GG + + R +T E ++ KL ++GLVVIGGD S A L E
Sbjct: 56 SVGDIIHRGG-TKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTE 114
Query: 210 HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH- 268
H +G P TID D+ + + GFDTA + I + R T +
Sbjct: 115 H----GFP--CVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKI----RDTATSHER 162
Query: 269 --FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYN 326
+ +MGR A I L L +I E I+ + + E G
Sbjct: 163 TYVIEVMGRHAGDIALWAGLAGGAESILIPEA--------DYDMHEIIARLKRGHERGKK 214
Query: 327 YGVILIPEGLIDFIPEVQQLIAELNEILAHEV 358
+ +I++ EG+ + + E E
Sbjct: 215 HSIIIVAEGVGS----GVEFGKRIEEETNLET 242
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 112 bits (282), Expect = 2e-27
Identities = 68/272 (25%), Positives = 109/272 (40%), Gaps = 41/272 (15%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSN 150
+IG++ SGG APG + + I G ++G R G AG++ L S
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRVAIA-------NGLEVFGIRYGFAGLVAGDIFPLESE 55
Query: 151 YIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAE 209
+ N G + S R E E K +D +VVIGGD S A L
Sbjct: 56 DVAHLINVSG-TFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR 114
Query: 210 HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH- 268
H +G P TID D+ + + G+DTAC + I + R T +H
Sbjct: 115 H----GFN--SIGLPGTIDNDIPYTDA--TIGYDTACMTAMDAIDKI----RDTASSHHR 162
Query: 269 --FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYN 326
V +MGR I + + + +I E + I + + + E G +
Sbjct: 163 VFIVNVMGRNCGDIAMRVGVACGADAIVIPER--------PYDVEEIANRLKQAQESGKD 214
Query: 327 YGVILIPEGLIDFIPEVQQLIAELNEILAHEV 358
+G++++ EG++ Q +AEL + +V
Sbjct: 215 HGLVVVAEGVMT----ADQFMAELKKYGDFDV 242
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 103 bits (258), Expect = 4e-23
Identities = 73/381 (19%), Positives = 136/381 (35%), Gaps = 57/381 (14%)
Query: 9 ADLSPVTSGTVKGRVASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPDEIAK 68
A + + + ++ + S++ P+ V+ F S +PD
Sbjct: 132 ASIDKLKAKLIEIGAEIIPSKIDLVEFSTRDPMGDVIS--FSSYPSLNSKKITSPDFFLH 189
Query: 69 LFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDR 123
+ + S + + K KI ++ SGG APG + + +GI+
Sbjct: 190 PKKEVRSEESIV-----EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGIF------ 238
Query: 124 AKGSVLYGFRGGPAGIMKC--KYVELTSNYIYPYRNQGGFDMICSGRDK-IETPEQFKQA 180
G +Y G G++K EL + + GG +I + R K QA
Sbjct: 239 -YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGG-TIIGTARCKEFRERWGRLQA 296
Query: 181 TETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTL-----------------VMGC 223
V +D LVV GGD S T A L + + + L ++G
Sbjct: 297 CYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGL 356
Query: 224 PKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH----FVRLMGRAASH 279
+ID D+ + ++ G ++ + E++ + A S H V +MGR
Sbjct: 357 VGSIDNDMCGTD--STIGAYSSLERIIELVDYIDATAAS-----HSRAFVVEVMGRHCGW 409
Query: 280 ITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLID- 338
+ L + T + I E + + N D + + + E G +++ EG ID
Sbjct: 410 LGLMSGIATGADYIFIPE----RPPSESNWKDDLKKVCLRHREKGRRKTTVIVAEGAIDD 465
Query: 339 -FIPEVQQLIAELNEILAHEV 358
P + + ++ + +
Sbjct: 466 QLNPITSEEVKDVLVEIGLDT 486
Score = 92.6 bits (230), Expect = 8e-20
Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 38/282 (13%)
Query: 85 GADAVRSDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGI 139
G+ V +L I ++ G + + + KG ++ R G AG+
Sbjct: 589 GSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA-------KGHRVFAIRNGFAGL 641
Query: 140 MKCKYV-ELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGD 198
++ V EL + + N GG I + R + + DGL++IGG
Sbjct: 642 IRHGAVRELNWIDVEDWHNTGG-SEIGTNRSL--PSDDMGTVAYYFQQYKFDGLIIIGGF 698
Query: 199 DSNTNACLLAEHF-RSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVM 257
++ T L + + P T+ ++ E S G DT N +
Sbjct: 699 EAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEY--SLGSDTCL--------NTL 748
Query: 258 IDA----RSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNV 309
+ + V + G + ++ L T E + +++
Sbjct: 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPENPINLQTVQEDI 808
Query: 310 TDYIVDIICKRAELGYNYGVILIPEGLIDFIP--EVQQLIAE 349
+ + + + + + E + +I E
Sbjct: 809 -ELLTRTYEEDDGKNRSGKIFIHNEKASKVYTTDLIAAIIGE 849
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 101 bits (253), Expect = 1e-22
Identities = 61/299 (20%), Positives = 114/299 (38%), Gaps = 50/299 (16%)
Query: 91 SDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMK--CK 143
S +K KI V+ SGG +PG + + +GI+ G ++ G G+++
Sbjct: 2 SQKKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-------FGCDVFAVYEGYEGLLRGGKY 54
Query: 144 YVELTSNYIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNT 202
++ + + ++GG +I + R E +QA + +D LVV GGD S T
Sbjct: 55 LKKMAWEDVRGWLSEGG-TLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLT 113
Query: 203 NACLLAEHFRSKNLKTL-----------------VMGCPKTIDGDLKCKEVPASFGFDTA 245
A L + S + + ++G +ID D+ + ++ G +A
Sbjct: 114 GADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTD--STIGAYSA 171
Query: 246 CKIYAEMIGNVMIDARSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAA 301
+ EM+ + A+S H V +MGR + L + T + I E
Sbjct: 172 LERICEMVDYIDATAKS-----HSRAFVVEVMGRHCGWLALMAGIATGADYIFIPE---- 222
Query: 302 KKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLID--FIPEVQQLIAELNEILAHEV 358
+ D + ++ + G I++ EG +D P + + L +
Sbjct: 223 RAVPHGKWQDELKEVCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDALIELGLDT 281
Score = 95.5 bits (238), Expect = 9e-21
Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 38/284 (13%)
Query: 83 PNGADAVRSDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPA 137
+G++ + ++L IG+V G + + + G Y G +
Sbjct: 382 DDGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS-------HGHKPYAIMNGFS 434
Query: 138 GIMK-CKYVELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIG 196
G+++ + EL+ + + N GG I + R E K LDGL+++G
Sbjct: 435 GLIQTGEVKELSWIDVENWHNLGG-SEIGTNRSV--ASEDLGTIAYYFQKNKLDGLIILG 491
Query: 197 GDDSNTNACLLAE-HFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGN 255
G + + L + + + P T+ ++ E S G DT N
Sbjct: 492 GFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEY--SLGVDTCL--------N 541
Query: 256 VMIDA----RSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLK 307
+++ + + + G + +I L T E+ +
Sbjct: 542 ALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKKIDLASIRE 601
Query: 308 NVTDYIVDIICKRAELGYNYGVILIPEGLIDFI--PEVQQLIAE 349
++ + + N +++ E + +I+E
Sbjct: 602 DI-TLLKENFRHDKGENRNGKLLVRNEQASSVYSTQLLADIISE 644
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 100 bits (250), Expect = 4e-22
Identities = 65/326 (19%), Positives = 118/326 (36%), Gaps = 66/326 (20%)
Query: 70 FPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRA 124
+ A + ++ + + + IGV+ SGG +PG + + +GIY
Sbjct: 157 LLPKVSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY------- 209
Query: 125 KGSVLYGFRGGPAGIMKCKYVELT-------SNYIYPYRNQGGFDMICSGRDK-IETPEQ 176
KG ++ G G+++ + ++ +GG I + R K
Sbjct: 210 KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWL----VEGG-TNIGTARCKEFRERSG 264
Query: 177 FKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKNLKTL----------------- 219
+A + + + +D L+V GGD S T A + S + L
Sbjct: 265 RLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLN 324
Query: 220 VMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYH----FVRLMGR 275
+ G +ID D+ + A+ G ++ I + A S H V +MGR
Sbjct: 325 ICGAVGSIDNDMSSTD--ATIGAFSSLDRICRAIDYIDATANS-----HSRAFIVEVMGR 377
Query: 276 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEG 335
+ L L T + +I E K + + D + DI+ K G ++++ EG
Sbjct: 378 HCGWLGLLAGLATSADYILIPE----KPASSREWQDQMCDIVGKHRARGKRKTIVIVAEG 433
Query: 336 LIDFIPEVQQLIAELNEILAHEVVDE 361
I +L+ I +V D
Sbjct: 434 AIS---------NDLSPISCDQVKDV 450
Score = 92.1 bits (229), Expect = 1e-19
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 35/270 (12%)
Query: 81 LVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGG 135
+ ++ +++ KI ++ G A G ++ + + +G V Y G
Sbjct: 558 SADHVPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS-------RGHVPYAIHNG 610
Query: 136 PAGIMKCKYV-ELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVV 194
+G+ + + V + I + + GG I + R K DGL++
Sbjct: 611 FSGLARHESVRSINWLDIEGWGSLGG-SEIGTNRTL-PNDADIGMIAYFFEKYGFDGLIL 668
Query: 195 IGGDDSNTNACLLAEH-FRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMI 253
+GG ++ + L +L+ ++ P TI ++ E S G DT
Sbjct: 669 VGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEY--SLGSDTCL------- 719
Query: 254 GNVMIDA----RSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQT 305
N ++ + + V + G + +I L I+ + EE + Q
Sbjct: 720 -NSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGISLAQL 778
Query: 306 LKNVTDYIVDIICKRAELGYNYGVILIPEG 335
++ + + + + +IL E
Sbjct: 779 EMDI-NSLKESFANDQGKTKSGRLILKSEN 807
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 96.9 bits (242), Expect = 4e-21
Identities = 65/300 (21%), Positives = 104/300 (34%), Gaps = 66/300 (22%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKC---KYVEL 147
I V+ SGG APG ++ + S I+ KG + G G+++ E
Sbjct: 5 AIAVMTSGGDAPGMNSNVRAIVRSAIF-------KGCRAFVVMEGYEGLVRGGPEYIKEF 57
Query: 148 T----SNYIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNT 202
+ +GG I + R + E + ++ +D L+V GGD S T
Sbjct: 58 HWEDVRGWS----AEGG-TNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLT 112
Query: 203 NACLLAEHFRSKNLKTL-----------------VMGCPKTIDGDLKCKEVPASFGFDTA 245
A L + S + L + G +ID D+ + + G +A
Sbjct: 113 GADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDA--TIGAYSA 170
Query: 246 CKIYAEMIGNVMIDARSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAA 301
+ I V A S H V +MGR + L + T + I E
Sbjct: 171 LDRICKAIDYVEATANS-----HSRAFVVEVMGRNCGWLALLAGIATSADYIFIPE---- 221
Query: 302 KKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDE 361
K T D + DI+ K G ++++ EG I A+L I +V
Sbjct: 222 KPATSSEWQDQMCDIVSKHRSRGKRTTIVVVAEGAIA---------ADLTPISPSDVHKV 272
Score = 92.7 bits (231), Expect = 7e-20
Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 19/252 (7%)
Query: 91 SDEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYV 145
D++LKI +V G A G ++ + + +G Y G +G+ + + V
Sbjct: 390 KDKRLKIAIVNVGAPAGGINSAVYSMATYCMS-------QGHRPYAIYNGWSGLARHESV 442
Query: 146 -ELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNA 204
L + ++++GG I + R K + DGL+++GG ++ +
Sbjct: 443 RSLNWKDMLGWQSRGG-SEIGTNRVT-PEEADLGMIAYYFQKYEFDGLIIVGGFEAFESL 500
Query: 205 CLLAEHFRSKNLKTL-VMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARST 263
L S + ++ P T+ ++ E S G DTA E V A ST
Sbjct: 501 HQLERARESYPAFRIPMVLIPATLSNNVPGTEY--SLGSDTALNALMEYCDVVKQSASST 558
Query: 264 GKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAEL 323
V G + ++ +L ++ + EE + +Q +++ +Y+ K
Sbjct: 559 RGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGISLEQLSEDI-EYLAQSFEKAEGR 617
Query: 324 GYNYGVILIPEG 335
G +IL
Sbjct: 618 GRFGKLILKSTN 629
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 96.3 bits (240), Expect = 6e-21
Identities = 62/295 (21%), Positives = 101/295 (34%), Gaps = 58/295 (19%)
Query: 96 KIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKC--KYVELT 148
I V+ SGG A G + + GI+ G+ ++ G G++ E T
Sbjct: 17 AIAVLTSGGDAQGMNAAVRAVVRVGIF-------TGARVFFVHEGYQGLVDGGDHIREAT 69
Query: 149 SNYIYPYRNQGGFDMICSGRDK-IETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLL 207
+ GG +I S R K E +A VK + L VIGGD S T A
Sbjct: 70 WESVSMMLQLGG-TVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTF 128
Query: 208 AEHFRSKNLKTL-----------------VMGCPKTIDGDLKCKEVPASFGFDTACKIYA 250
+ ++G +ID D ++ + G D+A
Sbjct: 129 RSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDM--TIGTDSALHRIT 186
Query: 251 EMIGNVMIDARSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTL 306
E++ + A+S H + +MGR ++ L +L + I E
Sbjct: 187 EIVDAITTTAQS-----HQRTFVLEVMGRHCGYLALVTSLSCGADWVFIPE-----CPPD 236
Query: 307 KNVTDYIVDIICKRAELGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDE 361
N D++ + + G +I++ EG ID I + V D
Sbjct: 237 DNWEDHLCRRLSETRTRGSRLNIIIVAEGAID---------RNGKPITSEGVKDL 282
Score = 95.1 bits (237), Expect = 1e-20
Identities = 48/258 (18%), Positives = 93/258 (36%), Gaps = 39/258 (15%)
Query: 92 DEKLKIGVVLSGGQAPGGHNVI-----SGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVE 146
+ V+ G A G + + G+ +G+ + G G K + E
Sbjct: 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-------QGNRVLVVHDGFEGPAKGQIEE 450
Query: 147 LTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACL 206
+Y+ + QGG + S R + F+Q + K ++ GLV+IGG ++ T
Sbjct: 451 AGWSYVGGWTGQGG-SKLGSKRTL--PKKSFEQISANITKFNIQGLVIIGGFEAYTGGLE 507
Query: 207 LAEHF-RSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDA----R 261
L E + L + P T+ ++ + S G DTA N + +
Sbjct: 508 LMEGRKQFDELCIPFVVIPATVSNNVPGSDF--SVGADTAL--------NTICTTCDRIK 557
Query: 262 STGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDII 317
+ + MG ++ L + I EE T++++ V+ +
Sbjct: 558 QSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEE----PFTIRDLQA-NVEHL 612
Query: 318 CKRAELGYNYGVILIPEG 335
++ + G++L E
Sbjct: 613 VQKMKTTVKRGLVLRNEK 630
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 6e-13
Identities = 77/562 (13%), Positives = 157/562 (27%), Gaps = 150/562 (26%)
Query: 30 LQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPNG---A 86
L IDH + + ++ + +E+ + F +L N
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFW----TLLSKQEEMVQKFVE------EVLRINYKFLM 95
Query: 87 DAVRSDEKLKIG----------VVLSGGQAPGGHNV-----ISGIYDYLQ--DRAKGSVL 129
++++++ + + Q +NV + L AK ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 130 YGFRGGPAGIMKCKYVELTSNYIYPYRNQGGFDM----ICSGRDKIETPEQ-FKQATETA 184
G G +G K + + Y+ Q D + +PE + +
Sbjct: 156 DGVLG--SG----KTW-VALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLL 206
Query: 185 VKLDLDGLVVIGGDDS---NTNAC--LLAEHFRSKNLKT--LVMGCPKTIDGDLKCKEVP 237
++D + + ++ L +SK + LV+ +++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL------L-NVQNAKAW 259
Query: 238 ASFGFDTACKIYAEMI----GNVMIDARSTGKYYH------------------FVRLMGR 275
+F CKI ++ V D S H ++ +
Sbjct: 260 NAFNLS--CKI---LLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 276 AASHITLECALQTHP-NITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPE 334
+ E L T+P ++II E + T N D + E N L P
Sbjct: 314 RPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPA 369
Query: 335 GLIDFIPEVQQLIAELNEILAHEVVDEGGQWKKKLTKQSLQLF-----EFLPQAIQEQL- 388
E +++ L + + L L + + +L
Sbjct: 370 -------EYRKMFDRL-SVFPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 389 ---MLERDP-------HGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQSHFFG 438
++E+ P K++ E E L + + F
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLEN------EYALHRSIVD-----HYNIPKTFDS 461
Query: 439 YEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSV--------GNLAAPVEEWTVSG 490
+ P Y + +G+ + H + L V + W SG
Sbjct: 462 DD--LIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 491 TALTALMDVERRHGKFKPVIKK 512
+ L L ++ +KP I
Sbjct: 519 SILNTLQQLK----FYKPYICD 536
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 3e-04
Identities = 98/599 (16%), Positives = 179/599 (29%), Gaps = 212/599 (35%)
Query: 30 LQTSRIDHALPLP-------SVLKNPF-KIVDGPASSAAGN--PDEIAKLFPNLFGQPSA 79
L ++H L +P S L+ F KI+ P A + P A+L G S+
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 80 LLVPNGADAVRSDEKLKIGV------VLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFR 133
L+ P+ D+ L + + L G H + + + LQ+
Sbjct: 71 LVEPSKVGQF--DQVLNLCLTEFENCYLEGNDI---HALAAKL---LQEN---------- 112
Query: 134 GGPAGIMKCKYVELTSNYIYPYRNQGGFDMICSGR--DKIETPEQFKQATETAVKLDLDG 191
++K K EL NY + I + R DK F+ E +L
Sbjct: 113 --DTTLVKTK--ELIKNY---ITAR-----IMAKRPFDKKSNSALFRAVGEGNAQL---- 156
Query: 192 LVVIGGDDSNTNACL--LAEHFR-------------SKNLKTLVMG-------CPKTIDG 229
+ + GG NT+ L + ++ ++ L L+ + ++
Sbjct: 157 VAIFGG-QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 230 D--LKCKE----------VPASF---G------FDTACKIY----AEMIGN--------- 255
L+ +P S G + K+ E+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 256 -----VMIDARSTGK-YYHFVRLMGRAASHITLECALQTHPNITI----------IGEEV 299
V I + + ++ VR I + C + +PN ++ E V
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSLPPSILEDSLENNEGV 334
Query: 300 AA-----KKQTLKNVTDYIVDIICKRAELGYNYGVILIPEGLID----FI----PE-VQQ 345
+ T + V DY+ + L + I L++ + P+ +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKT---NSHLPAG-KQVEI--SLVNGAKNLVVSGPPQSLYG 388
Query: 346 LIAELNEILAHEVVDEGGQWKKKLTKQSLQL-FEFLP--------------QAIQEQLM- 389
L L + A +D Q + +++ L+ FLP I + L+
Sbjct: 389 LNLTLRKAKAPSGLD---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 390 --LERDPH-----------G-NVQVAKIETEKMLIQMVETELENRKQEGVN--KGQFKGQ 433
+ + G +++V + ++ + V
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-------VKWETTTQFKA 498
Query: 434 SHF--FGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTG----LISSVGNL-AAPVEE 485
+H FG G GL G L H K G +I G L P ++
Sbjct: 499 THILDFGPGGASGL----------------GVLTHRNKDGTGVRVI-VAGTLDINPDDD 540
Score = 42.3 bits (99), Expect = 4e-04
Identities = 79/451 (17%), Positives = 129/451 (28%), Gaps = 141/451 (31%)
Query: 148 TSNYIYPYRNQGGFDMICSGRDKIETP-EQFKQATETAVKLDLD----GLV---VIGGDD 199
T+++ + Q F+ I + P E F E +L G V V
Sbjct: 24 TASFFIASQLQEQFNKI------LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 200 SNTNACLLA--EHFRSKNLK-----TLVMGCPKTIDGDL-KCKEVPASFGFDTACKIYAE 251
+ L F + L+ L + D L K KE+ K Y
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL---------IKNY-- 126
Query: 252 MIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITII----GEEVAAKKQTLK 307
I AR K R + ++ + + + I G
Sbjct: 127 ------ITARIMAK-----RPFDKKSNSALFRAVGEGNAQLVAIFGGQG----------- 164
Query: 308 NVTDYIVDIICKRAELGYN-YGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGGQWK 366
N DY ++ +L Y Y V LI E L+ +
Sbjct: 165 NTDDYFEEL----RDL-YQTYH------------VLVGDLIKFSAETLSELIRTTLDA-- 205
Query: 367 KKLTKQSLQLFEFL--PQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQEG 424
+K+ Q L + E+L P ++ L P + I +IQ+ + K G
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIP---ISCPLIG----VIQLAHYVV-TAKLLG 257
Query: 425 VNKGQFKGQSHFFGYEGRC-GLPT-----------NFDATYCYALGYGAGALLHSGKTGL 472
G+ + S+ G G GL T +F + A+ L G
Sbjct: 258 FTPGELR--SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV----LFFIG---- 307
Query: 473 ISSVGNLAAPVEEWTVSGTALTALM---DVERRHGKFKPVIKKAMVELDGAPFKKFVSMR 529
A P T+L + +E G P M+ + ++
Sbjct: 308 --VRCYEAYPN-------TSLPPSILEDSLENNEGVPSP-----MLSISNLTQEQVQDYV 353
Query: 530 DEWALNNR-------YISP--GPIQF--TGP 549
++ N+ IS G +GP
Sbjct: 354 NK--TNSHLPAGKQVEISLVNGAKNLVVSGP 382
Score = 40.4 bits (94), Expect = 0.002
Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 79/284 (27%)
Query: 296 GEEVAAKKQTLKNVTDYIVDIICKRAE--LGYNYGVILI------PEGL-IDFIPEVQQL 346
G ++ + ++V + RA+ YG ++ P L I F E +
Sbjct: 1632 GMDLYKTSKAAQDVWN--------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 347 IAELNEILAHEVVDEGGQWKKKLTK---QSLQLFEFLPQAIQEQLMLERDPHGNVQVAKI 403
I E + E + +G +K+ K + + F + + L + Q A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQ----FTQPALT 1737
Query: 404 ETEKMLIQMVETELENRKQEGVNKGQ--FKGQSHFFGYEGRCGLPTNFDATYCYALGYGA 461
EK + + K +G+ F G H G E Y AL A
Sbjct: 1738 LMEKAAFEDL-------KSKGLIPADATFAG--HSLG-E------------YA-ALASLA 1774
Query: 462 GA--------LLHS-GKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKK 512
++ G T +A P +E S + A+ + R F +
Sbjct: 1775 DVMSIESLVEVVFYRGMT------MQVAVPRDELGRSNYGMIAI-NPGRVAASFSQEALQ 1827
Query: 513 AMVELDGAPFKKFVSMRDEWALN-NRYISPGPIQFTGPTSGDVN 555
+VE G V +N N Q+ +GD+
Sbjct: 1828 YVVERVGKRTGWLVE-----IVNYN---VENQ-QYV--AAGDLR 1860
Score = 38.5 bits (89), Expect = 0.007
Identities = 34/231 (14%), Positives = 76/231 (32%), Gaps = 55/231 (23%)
Query: 17 GTVKGR-VASVYSELQTSRIDHALPLPSVLKNPFKIVDGPASSAAGNPDEIAKLFPNLFG 75
G KG+ + YS + + + + FK ++ ++S ++ L F
Sbjct: 1677 GGEKGKRIRENYSAMIF---ETIVDGKLKTEKIFKEINEHSTSYTFRSEK-GLLSATQFT 1732
Query: 76 QPSALLVPNGA--DAVRSDEKLKIGVVLSG---GQ-----APGGHNVISGIYDYLQDRAK 125
QP AL + A + ++S + +G G+ + V+S ++ +
Sbjct: 1733 QP-ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD--VMS-----IESLVE 1784
Query: 126 GSVLYGFRGGPAGIMKCKYVELTSNYIYPYRNQG--GFDMICSGRDKIE---TPEQFKQA 180
V++ +RG +T P G + MI ++ + E +
Sbjct: 1785 --VVF-YRG------------MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 181 TET----------AVKLDLDGL-VVIGGDDSNTN-ACLLAEHFRSKNLKTL 219
E V +++ V GD + + + + + +
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Score = 28.5 bits (63), Expect = 8.2
Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 31/154 (20%)
Query: 382 QAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETE--------LENRKQEGVNKGQFKGQ 433
Q QEQ M D + + A+ + +T + N +
Sbjct: 1624 QGSQEQGM-GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-------- 1674
Query: 434 SHFFGYEGRCGLPTNFDATYCYAL---GYGAGALLHSGKTGLISSVGNLAAPVEEWTVSG 490
HF G +G+ + N+ A + G + +S + +S
Sbjct: 1675 -HFGGEKGK-RIRENYSA-MIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGL--LSA 1728
Query: 491 TALT--ALMDVERRHGKFKPVIKKAMVELDGAPF 522
T T AL +E+ F+ +K + A F
Sbjct: 1729 TQFTQPALTLMEK--AAFE-DLKSKGLIPADATF 1759
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.3 bits (78), Expect = 0.063
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 209 EHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFD-----TACKIYAEMIGNVMIDARS 262
R NL V+ CP+ CK P C + ++ + ++D RS
Sbjct: 11 AGRRGPNLNI-VLTCPE-------CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRS 61
Score = 29.6 bits (66), Expect = 1.9
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 25/61 (40%)
Query: 283 ECALQTHPNITIIGEEVAAKKQTLKNVTDYIV-DIICKRAELGYNYGVILIPEGLIDFIP 341
EC P I V + D++C G++ + + L+D
Sbjct: 26 ECK-VYPPKI----------------VERFSEGDVVCA------LCGLV-LSDKLVDTRS 61
Query: 342 E 342
E
Sbjct: 62 E 62
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 32.0 bits (73), Expect = 0.42
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 285 ALQTHPNITIIGEEVAAKKQTLKNVTDYIVDII 317
A Q HP + +E A + +K V Y ++
Sbjct: 228 AFQQHPRTVFVCDEDATLELKVKTV-KYFKGLM 259
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 31.6 bits (72), Expect = 0.58
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 285 ALQTHPNITIIGEEVAAKKQTLKNVTDYIVDII 317
ALQ H N I+ ++ A + + V +Y DI
Sbjct: 249 ALQLHKNAIIVSDKNATYELKVGTV-EYFNDIE 280
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 29.3 bits (66), Expect = 2.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 285 ALQTHPNITIIGEEVAAKKQTLKNV 309
LQ HP ++ +E + + +K +
Sbjct: 228 CLQLHPKAIMVCDEPSTMELKVKTL 252
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Length = 319
Score = 27.7 bits (61), Expect = 9.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 464 LLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVE 500
+L G+T + S GNL AP +SG + ++ +
Sbjct: 226 VLKPGQTLRVRSNGNLIAPWYGHILSGESHGRILKTD 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,837,193
Number of extensions: 565498
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1200
Number of HSP's successfully gapped: 47
Length of query: 566
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 467
Effective length of database: 3,937,614
Effective search space: 1838865738
Effective search space used: 1838865738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)