RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008424
(566 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 550 bits (1417), Expect = 0.0
Identities = 253/551 (45%), Positives = 357/551 (64%), Gaps = 17/551 (3%)
Query: 28 SELQTSRIDHALPLPSVLKNPF---KIVDGPASSAAGNPDEIAKLFPNLFGQPSALLVPN 84
S + R + LP++LK F +V G + A + + + F N +G P
Sbjct: 1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTE- 59
Query: 85 GADAVRSDEKLKIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKY 144
G ++ + L IG++LSGG APGGHNVISG++D ++ S L+GF+GGP G+++
Sbjct: 60 GESSLSFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDK 119
Query: 145 VELTSNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNA 204
+ELT + I YRN GGFD++ SGR KIET E + +A A + +L+ +++IGGDDSNTNA
Sbjct: 120 IELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNA 179
Query: 205 CLLAEHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTG 264
+LAE+F+ V+G PKTID DL+ + SFGFD+A KIY+E+IGN+ DA ST
Sbjct: 180 AILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 239
Query: 265 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELG 324
KY+HFV+LMGR+ASH+ LECAL+THPNI I+ EEV AKK+TL + D +V +I KR+ G
Sbjct: 240 KYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNG 299
Query: 325 YNYGVILIPEGLIDFIPEVQQLIAELNEILAHEVVDEGG--------QWKKKLTKQSLQL 376
N+GV+++PEGLI+FIPEV+ L+ EL +I + G + KL+ +
Sbjct: 300 DNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGV 359
Query: 377 FEFLPQAIQEQL---MLERDPHGNVQVAKIETEKMLIQMVETELENRKQEGVNKGQFKGQ 433
+ LP IQ +L +LERDPHGN V+++ TEK+ I+M+++ L + K+ G KG F
Sbjct: 360 YLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPV 419
Query: 434 SHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTAL 493
HFFGYEGR P+NFD+ YCY+LGY A L+ +G TG +S + NL +W G L
Sbjct: 420 DHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPL 479
Query: 494 TALMDVERRHGKFKPVIKKAMVELDGAPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGD 553
T LM++E R+G+ KPVIKKA+V+L+G PFK+FV RD+WALNN Y+ PGP+Q+ G +
Sbjct: 480 TMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIV 539
Query: 554 --VNHTLLLEL 562
+ TL LEL
Sbjct: 540 DEITETLKLEL 550
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 149 bits (377), Expect = 3e-41
Identities = 65/257 (25%), Positives = 102/257 (39%), Gaps = 19/257 (7%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
KIGV+ SGG APG + I G+ +G + G G G+ + + V+L +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSA--LTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 156 RNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN 215
N+GG + + + A E K +D LVVIGGD S A L E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP-- 119
Query: 216 LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275
+G P TID D+K + + GF TA E I + D S+ + V +MGR
Sbjct: 120 ----CIGLPGTIDNDIKGTDY--TIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGR 172
Query: 276 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEG 335
+TL A+ ++ ++ + +V+ I G + ++ I E
Sbjct: 173 YCGDLTLAAAIAGGCEFVVV--------PEVEFSREDLVNEIKAGIAKGKKHAIVAITEH 224
Query: 336 LIDFIPEVQQLIAELNE 352
+ D + E
Sbjct: 225 MCDVDELAHFIEKETGR 241
Score = 35.1 bits (80), Expect = 0.017
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 430 FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGN 478
+ ++ G+ R G P +D +G A LL +G G + N
Sbjct: 241 RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQN 289
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 147 bits (372), Expect = 1e-40
Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 19/256 (7%)
Query: 96 KIGVVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELTSNYIYPY 155
+IGV+ SGG +PG + I + G +YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKA--IYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 156 RNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLAEHFRSKN 215
++GG + + + +T E K+ E K + GLVVIGGD S A L EH
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP-- 118
Query: 216 LKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGR 275
+G P TID D + GFDTA + I + D ++ + + + +MGR
Sbjct: 119 ----CVGVPGTIDND--IPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGR 171
Query: 276 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDIICKRAELGYNYGVILIPEG 335
A I L L +I E + ++ + + E G + +I++ EG
Sbjct: 172 HAGDIALWSGLAGGAETILIPEA--------DYDMNDVIARLKRGHERGKKHSIIIVAEG 223
Query: 336 LIDFIPEVQQLIAELN 351
+ + +Q+
Sbjct: 224 VGSGVDFGRQIQEATG 239
Score = 32.8 bits (74), Expect = 0.10
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 430 FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGN 478
F+ + G+ R G PT FD LG A LL GK G + N
Sbjct: 240 FETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQN 288
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 33.1 bits (74), Expect = 0.087
Identities = 18/129 (13%), Positives = 29/129 (22%), Gaps = 7/129 (5%)
Query: 172 ETPEQFKQATETAVKLDLDGLVVI-----GGDDSNTNACLLAEHFRSKNLKTLVMGCPKT 226
E + A E AV + GG DS+ A + L T+ MG +
Sbjct: 12 EAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRA--AGELDTVSMGTDTS 69
Query: 227 IDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECAL 286
+ V I + + A + +
Sbjct: 70 NEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRALD 129
Query: 287 QTHPNITII 295
I
Sbjct: 130 GPERRILTG 138
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 30.8 bits (68), Expect = 0.48
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 10/117 (8%)
Query: 243 DTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPN-ITIIGEEVAA 301
A ++ + + + A++ V AA H L+ PN +G
Sbjct: 241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGG 300
Query: 302 KKQTLKNVTDYIVDIICKRAELGYNYGVILI----PEGLIDF----IPEVQQLIAEL 350
L + I + A LG + +L E P + I E+
Sbjct: 301 AGTALVGDGPTVAARINEYAALGID-SFVLSGYPHLEEAYRVGELLFPLLDVAIPEI 356
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 30.1 bits (68), Expect = 0.73
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 464 LLHSGKTGLISSVGNLAAPVEEWTVSGTALTALM 497
+L G+T + S GNL AP +SG + ++
Sbjct: 226 VLKPGQTLRVRSNGNLIAPWYGHILSGESHGRIL 259
>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
different strains [TaxId: 11320]}
Length = 314
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 464 LLHSGKTGLISSVGNLAAPVEEWTVSG 490
+L+ T S G AP + G
Sbjct: 225 MLNPNDTVTFSFNGAFIAPDRASFLRG 251
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319)
{Vibrio cholerae [TaxId: 666]}
Length = 81
Score = 27.0 bits (60), Expect = 1.5
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 298 EVAAKKQTLKNVTDYIVDIICKRAE 322
AA + ++ ++++ ++A+
Sbjct: 19 AKAAALAGMSSINSFVLNAAIEKAK 43
>d1ze3h1 b.2.3.2 (H:159-279) Mannose-specific adhesin FimH
{Escherichia coli [TaxId: 562]}
Length = 121
Score = 27.3 bits (60), Expect = 2.3
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 274 GRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 311
G +T+ CA + + G A N
Sbjct: 19 GSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTAS 56
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 28.2 bits (62), Expect = 2.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 285 ALQTHPNITIIGEEVAAKKQTLKNV 309
A Q HP + +E A + +K V
Sbjct: 228 AFQQHPRTVFVCDEDATLELKVKTV 252
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987
{Bacteroides vulgatus [TaxId: 821]}
Length = 126
Score = 27.1 bits (60), Expect = 2.9
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 359 VDEGGQWKKKLTKQSLQLFEFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE 418
D+ G W + K S +P AI++ + + + ++ KIE +K E +L
Sbjct: 55 FDKKGIWTEVNCKYSAVPVAVVPDAIKKYV---ATNYPDAKMLKIERDKH---DYEVKLS 108
Query: 419 NRKQ 422
N +
Sbjct: 109 NGWE 112
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 27.8 bits (61), Expect = 3.1
Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 32/236 (13%)
Query: 99 VVLSGGQAPGGHNVISGIYDYLQDRAKGS----------VLYGFRGGPAGIMKCKYVELT 148
+ L G P Y L + K + + G P + Y +
Sbjct: 37 LGLPTGGTP------MTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMH 90
Query: 149 SNYIYPYRNQGGFDMICSGRDKIETPEQFKQATETAVKLDLDGLVVIGGDDSNTNACLLA 208
N+ + +G + + E ++ + +GG ++ +
Sbjct: 91 RNFFDHVDIPAENINLLNGNA--PDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNE 148
Query: 209 EHFRSKNLKTLVMGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARS-----T 263
+ + T + + + + K + ++DA
Sbjct: 149 PASSLASRTRIKTLTHDTRVANSRFFDNDV----NQVPKYALTVGVGTLLDAEEVMILVL 204
Query: 264 GKYYHFVRLMGRAASHITLEC---ALQTHPNITIIGEEVAAKKQTLKNVTDYIVDI 316
G + LQ HP ++ +E + + +K + Y ++
Sbjct: 205 GSQKALALQAA-VEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTL-RYFNEL 258
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 28.2 bits (63), Expect = 3.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 464 LLHSGKTGLISSVGNLAAPVEEWTVSGTALTALM 497
+L S GN AP + + +A+M
Sbjct: 232 ILKPNDAINFESNGNFIAPEYAYKIVKKGGSAIM 265
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 27.1 bits (60), Expect = 6.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 464 LLHSGKTGLISSVGNLAAPV 483
LL G T + + GNL AP+
Sbjct: 232 LLKPGDTIIFEANGNLIAPM 251
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga
maritima [TaxId: 2336]}
Length = 433
Score = 27.2 bits (59), Expect = 6.7
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 458 GYGAGALLHSGKTGLISSV-----GNLAAPVEEWTVSGTALTALM-------DVERRHGK 505
G AGA SG+ L + G +A VE+ T+SG L L DV+
Sbjct: 361 GMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKVSQHT 420
Query: 506 FKPVIK 511
P +
Sbjct: 421 IAPSVL 426
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 27.2 bits (59), Expect = 7.0
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 58 SAAGNP--DEIAKLFPNLFGQPSALLVPNGADAVRSDEKLKIGVVLSGGQAPGGHNVISG 115
+ AG+ ++ LF + G A E + V+L Q G
Sbjct: 70 AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGA----ENILFPVLLKYKQKEGKAKNPVF 125
Query: 116 IYDYLQDRAKGSVLYG 131
I ++ D V
Sbjct: 126 ISNFHFDTTAAHVELN 141
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 26.9 bits (58), Expect = 7.0
Identities = 22/131 (16%), Positives = 32/131 (24%), Gaps = 11/131 (8%)
Query: 172 ETPEQFKQATETAVKLDLDGLVVIGGDDS-NTNACLLAEHF----------RSKNLKTLV 220
E E A+ + D L+ GGD + N +AE + N
Sbjct: 42 EKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRA 101
Query: 221 MGCPKTIDGDLKCKEVPASFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHI 280
+ P I G L S D I + Y +L
Sbjct: 102 LHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFA 161
Query: 281 TLECALQTHPN 291
+ P
Sbjct: 162 YYIKGFEMLPQ 172
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 26.1 bits (57), Expect = 9.0
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 224 PKTIDGDLKCKEVPASFGFDTACKIYAEMIGN----VMIDARSTGKYYHFVRLMGRAASH 279
PK +D + K++P I MI + + + ++ +S
Sbjct: 113 PKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSE 172
Query: 280 ITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIV 314
+ L +P I + A L N YI+
Sbjct: 173 YGVNKILSKYPFIYLF---TVAIDPEL-NNKGYIL 203
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 320
Score = 26.3 bits (58), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 464 LLHSGKTGLISSVGNLAAP 482
++ G +I+S GNL AP
Sbjct: 228 IVKPGDVLVINSNGNLIAP 246
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,120,808
Number of extensions: 102423
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 23
Length of query: 566
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,171,896
Effective search space: 557822496
Effective search space used: 557822496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)