BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008426
(566 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZD4|DEG15_ARATH Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis
thaliana GN=DEG15 PE=1 SV=2
Length = 709
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/578 (50%), Positives = 382/578 (66%), Gaps = 58/578 (10%)
Query: 1 MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLS-FFDTK 59
M + ++ FSRNF VLV+V+GPDPKGLKMR+HAFHQY+SG TLSASG+LLP F +
Sbjct: 1 MDVSKVVSFSRNFAVLVKVEGPDPKGLKMRKHAFHQYHSGNATLSASGILLPRDIFLSGE 60
Query: 60 VAERNWGVNG----LIVTVASVVEPFLLPQYRDKDTSEGQP-ELITGSQIDFLVEGKLRS 114
VA + G L++TVASVVEPFL +R + P +LI G+ I+ +VEG+L+S
Sbjct: 61 VAAKVLFEAGQDMALVLTVASVVEPFLTLGHRTSSSISQDPVKLIPGAMIEIMVEGQLKS 120
Query: 115 EKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSS 174
EKE +P WV AQL+ LVD+PVSS ALQSL+EASSG + W++GWSL N S
Sbjct: 121 EKE-------APFWVPAQLLSLVDVPVSSAALQSLIEASSGSKDSGWDIGWSLVSAANGS 173
Query: 175 QPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIAL 234
QP +IE LM+ ++E N + M+KS +R+AILGV L P++
Sbjct: 174 QP-----SINIEHYSKPLMQ------LDEPHNANFMAKSATRMAILGVPLSLLGQPSMNF 222
Query: 235 TPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEG 294
+ +GD L+A+GSPFG+LSP++FFNSVS GS+AN YP S +SL++AD+RCLPGMEG
Sbjct: 223 ASSSSKGDTLVALGSPFGILSPVNFFNSVSTGSIANSYPSGSLKKSLMIADVRCLPGMEG 282
Query: 295 GPVFGEHAHFVGILIRPLRQK-SGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKG 353
PVF ++ H +GILIRPLRQK SG EIQLV+PW AI TACS LLL+EP
Sbjct: 283 APVFAKNGHLIGILIRPLRQKNSGVEIQLVVPWGAITTACSHLLLEEP------------ 330
Query: 354 NLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLL 413
+ G + + S +L+ D+ + + I+KA+ SVCLIT++DGVWASG++L
Sbjct: 331 --SVEGKASQWGSEVLSVKS-------DASIPAQVAIEKAMESVCLITVNDGVWASGIIL 381
Query: 414 NDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQP-----EDSASSGHTGVDQYQKSQTLP 468
N+ GLILTNAHLLEPWR+GK G G F+P E+ +S+G + QKSQTLP
Sbjct: 382 NEHGLILTNAHLLEPWRYGK----GGVYGEGFKPYVLGAEEFSSTGSKFWE--QKSQTLP 435
Query: 469 PKMPKIVDSSVDEH-RAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLL 527
K P+ SSV E+ R YK + GHR IRVRL HLD W WC A +VY+CK LD++LL
Sbjct: 436 RKAPRNHYSSVGENIREYKHNFLQTGHRDIRVRLCHLDSWTWCPANVVYICKEQLDIALL 495
Query: 528 QLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCG 565
QL Y+P +L PI A+F P LG+ A+V+GHGLFGPRCG
Sbjct: 496 QLEYVPGKLQPITANFSSPPLGTTAHVVGHGLFGPRCG 533
>sp|Q2T9J0|TYSD1_HUMAN Peroxisomal leader peptide-processing protease OS=Homo sapiens
GN=TYSND1 PE=1 SV=3
Length = 566
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 230 PNIALTPLNK--RGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIR 287
P +A++PL +G LL GSPFG P F N++S G ++N P LL+ D R
Sbjct: 203 PAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSCGVLSNVAGP------LLLTDAR 256
Query: 288 CLPGMEGGPVFGEH--AHFVGILIRPLRQKSGAEIQLVI 324
CLPG EGG VF V +++ PL K+G + +
Sbjct: 257 CLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTL 295
>sp|Q9DBA6|TYSD1_MOUSE Peroxisomal leader peptide-processing protease OS=Mus musculus
GN=Tysnd1 PE=1 SV=1
Length = 568
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 221 GVSSYLKDLPNIALTPLNK--RGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTT 278
G ++ + P + + PL +G LLA GSPFG P F N++S G ++N P
Sbjct: 195 GAAAEERRGPVVTVAPLGAVVKGAPLLACGSPFGAFCPDIFLNTLSRGVLSNAAGP---- 250
Query: 279 RSLLMADIRCLPGMEGGPVF 298
LL+ D RCLPG EGG VF
Sbjct: 251 --LLLTDARCLPGTEGGGVF 268
>sp|Q48EU9|DEGPL_PSE14 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=mucD PE=3 SV=1
Length = 479
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 211 SKSTSRVAILGVSSYLKDLPNIALTPLN--KRGDLLLAVGSPFGVLSPMHFFNSVSMG-- 266
+ S + VA+L + KDLP L N K G+ +LA+GSPFG F +SV+ G
Sbjct: 144 TDSRTDVAVLKIDG--KDLPTAKLGNSNTLKVGEWVLAIGSPFG------FDHSVTKGIV 195
Query: 267 SVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
S P T + D+ PG GGP+F VGI
Sbjct: 196 SAKGRSLPNDTYVPFIQTDVAINPGNSGGPLFNMAGEVVGI 236
>sp|B1J4D7|DEGPL_PSEPW Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
putida (strain W619) GN=PputW619_1070 PE=3 SV=1
Length = 479
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 217 VAILGVSSYLKDLPNIALTPLNKR--GDLLLAVGSPFGVLSPMHFFNSVSMG--SVANCY 272
VA+L V K+LP + L K G+ +LA+GSPFG F +SV+ G S
Sbjct: 148 VALLKVDG--KNLPTVKLGDSEKLKVGEWVLAIGSPFG------FDHSVTKGIVSAKGRT 199
Query: 273 PPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
P T + D+ PG GGP+F + VGI
Sbjct: 200 LPNDTYVPFIQTDVAINPGNSGGPLFNMNGEVVGI 234
>sp|A5W8F5|DEGPL_PSEP1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=Pput_4291 PE=3 SV=1
Length = 477
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 217 VAILGVSSYLKDLPNIALTPLNKR--GDLLLAVGSPFGVLSPMHFFNSVSMG--SVANCY 272
VA+L V K+LP + L K G+ +LA+GSPFG F +SV+ G S
Sbjct: 148 VALLKVDG--KNLPTVKLGDSEKLKVGEWVLAIGSPFG------FDHSVTKGIVSAKGRT 199
Query: 273 PPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
P T + D+ PG GGP+F VGI
Sbjct: 200 LPNDTYVPFIQTDVAINPGNSGGPLFNMKGEVVGI 234
>sp|F6AA62|DEGPL_PSEF1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
fulva (strain 12-X) GN=Psefu_3239 PE=3 SV=1
Length = 479
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 215 SRVAILGVSSYLKDLPNIALTPLN--KRGDLLLAVGSPFGVLSPMHFFNSVSMG--SVAN 270
S VA+L V + DLP + L + K G+ +LA+GSPFG F +SV+ G S
Sbjct: 147 SDVALLKVEA--NDLPTVKLGNSDNLKVGEWVLAIGSPFG------FDHSVTAGIVSAKG 198
Query: 271 CYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
P + + D+ PG GGP+F VGI
Sbjct: 199 RSLPNESYVPFIQTDVAINPGNSGGPLFNLDGEVVGI 235
>sp|B0KV30|DEGPL_PSEPG Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
putida (strain GB-1) GN=PputGB1_4377 PE=3 SV=1
Length = 477
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 217 VAILGVSSYLKDLPNIALTPLNKR--GDLLLAVGSPFGVLSPMHFFNSVSMG--SVANCY 272
VA+L V K+LP + L K G+ +LA+GSPFG F +SV+ G S
Sbjct: 148 VALLKVEG--KNLPIVKLGDSEKLKVGEWVLAIGSPFG------FDHSVTKGIVSAKGRT 199
Query: 273 PPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
P T + D+ PG GGP+F VGI
Sbjct: 200 LPNDTYVPFIQTDVAINPGNSGGPLFNMKGEVVGI 234
>sp|A4XSC0|DEGPL_PSEMY Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
mendocina (strain ymp) GN=Pmen_1471 PE=3 SV=1
Length = 474
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 215 SRVAILGVSSYLKDLPNIALTPLN--KRGDLLLAVGSPFGVLSPMHFFNSVSMG--SVAN 270
S VA+L V K LP + L + K G+ +LA+GSPFG F +SV+ G S
Sbjct: 142 SDVALLKVEG--KGLPTVRLGKSDELKVGEWVLAIGSPFG------FDHSVTAGIVSAKG 193
Query: 271 CYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
P + + D+ PG GGP+F VGI
Sbjct: 194 RNLPSDSYVPFIQTDVAINPGNSGGPLFNLKGEVVGI 230
>sp|Q2SL36|DEGPL_HAHCH Probable periplasmic serine endoprotease DegP-like OS=Hahella
chejuensis (strain KCTC 2396) GN=mucD PE=3 SV=1
Length = 469
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 211 SKSTSRVAILGVSSYLKDLP--NIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMG-- 266
S S +A+L V + DLP N+ + K G+ ++A+GSPFG F +V+ G
Sbjct: 133 SDEKSDLAVLKVEA--DDLPVLNLGKSSELKVGEWVVAIGSPFG------FEYTVTAGIV 184
Query: 267 SVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
S P + D+ PG GGP+F VGI
Sbjct: 185 SAKGRSLPNENYVPFIQTDVAINPGNSGGPLFNLEGEVVGI 225
>sp|E1V4H2|DEGPL_HALED Probable periplasmic serine endoprotease DegP-like OS=Halomonas
elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 /
NCIMB 2198 / 1H9) GN=mucD PE=3 SV=1
Length = 474
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 211 SKSTSRVAILGVSSYLKDLPNIALTPLN--KRGDLLLAVGSPFGVLSPMHFFNSVSMG-- 266
+ + + VA+L V + +LP + L K G + A+GSPFG +SV+ G
Sbjct: 141 ADTKTDVAVLKVDA--DNLPTLTLGDSEDLKVGQWVAAIGSPFG------LDHSVTSGII 192
Query: 267 SVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
S N PR + D+ PG GGP+F +GI
Sbjct: 193 SAINRTLPRDVYVPFIQTDVAINPGNSGGPLFNLDGEVIGI 233
>sp|Q4KGQ4|DEGPL_PSEF5 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=mucD PE=1
SV=1
Length = 476
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 215 SRVAILGVSSYLKDLPNIALTPLN--KRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANC- 271
S VA+L + KDLP + L K G ++A+GSPFG F ++V+ G V+
Sbjct: 145 SDVALLKIDG--KDLPVLKLGKSQDLKAGQWVVAIGSPFG------FDHTVTQGIVSAIG 196
Query: 272 -YPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGI 307
P + D+ PG GGP+F VGI
Sbjct: 197 RSLPNENYVPFIQTDVPINPGNSGGPLFNLAGEVVGI 233
>sp|Q9Z4H7|HTRA_LACHE Serine protease Do-like HtrA OS=Lactobacillus helveticus GN=htrA
PE=3 SV=2
Length = 413
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 199 FAMEESSNLSLMSK-STSRVAILGV-SSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSP 256
A ++ N ++ K ST+ +A+L + + Y+ + + G ++AVGSP G
Sbjct: 162 LANGKTVNAKVVGKDSTTDLAVLSIDAKYVTQTAQFGDSKHLEAGQTVIAVGSPLG---- 217
Query: 257 MHFFNSVSMGSVANCYPPRSTTRS------LLMADIRCLPGMEGGPVFGEHAHFVGILIR 310
+ ++V+ G ++ P R+ + S ++ D PG GG + +GI
Sbjct: 218 SEYASTVTQGIIS--APARTISTSSGNQQTVIQTDAAINPGNSGGALVNSAGQVIGINSM 275
Query: 311 PLRQKS-GAEIQ---LVIPWEAIATACSDLLLK 339
L Q S G ++ IP + T ++L+ K
Sbjct: 276 KLAQSSDGTSVEGMAFAIPSNEVVTIVNELVKK 308
>sp|Q9R9I1|HTRB_BACSU Serine protease Do-like HtrB OS=Bacillus subtilis (strain 168)
GN=htrB PE=2 SV=1
Length = 458
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 207 LSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMG 266
L + K+ +VA G SS L+ G+ ++A+G+P G F +V+ G
Sbjct: 221 LEISGKNVKKVASFGDSSQLR------------TGEKVIAIGNPLG----QQFSGTVTQG 264
Query: 267 SVA--NCYPPRSTTR-----SLLMADIRCLPGMEGGPVFGEHAHFVGI 307
++ N TT+ ++L D PG GGP+ +GI
Sbjct: 265 IISGLNRTIDVDTTQGTVEMNVLQTDAAINPGNSGGPLINASGQVIGI 312
>sp|A6VUA4|DEGPL_MARMS Probable periplasmic serine endoprotease DegP-like OS=Marinomonas
sp. (strain MWYL1) GN=Mmwyl1_1102 PE=3 SV=1
Length = 469
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 22/90 (24%)
Query: 228 DLPNIALTPLNKR--GDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSL---- 281
DLP + + +K G +LA+GSPFG F +V+ G V+ +T RSL
Sbjct: 154 DLPIVKMGDSDKLKPGQWVLAIGSPFG------FDYTVTAGIVS------ATGRSLPSDN 201
Query: 282 ----LMADIRCLPGMEGGPVFGEHAHFVGI 307
+ D+ PG GGP+F VGI
Sbjct: 202 YVPFIQTDVAINPGNSGGPLFNLDGEVVGI 231
>sp|O34358|HTRA_BACSU Serine protease Do-like HtrA OS=Bacillus subtilis (strain 168)
GN=htrA PE=2 SV=2
Length = 449
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 211 SKSTSRVAILGVSS-YLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMG--- 266
S S + +A+L +S ++ + N + + G+ ++A+G P G + G
Sbjct: 204 SDSLTDLAVLQISDDHVTKVANFGDSSDLRTGETVIAIGDPLGKDLSRTVTQGIVSGVDR 263
Query: 267 SVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPW 326
+V+ T+ +++ D PG GGP+ VGI + + I IP
Sbjct: 264 TVSMSTSAGETSINVIQTDAAINPGNSGGPLLNTDGKIVGINSMKISEDDVEGIGFAIPS 323
Query: 327 EAIATACSDLLLK 339
+ +LL K
Sbjct: 324 NDVKPIAEELLSK 336
>sp|P05676|Y938_SYNP6 Uncharacterized serine protease syc0938_d OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=syc0938_d PE=3 SV=2
Length = 406
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 241 GDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGE 300
GD +A+G+P G+ + + S+G ++ + D PG GGP+
Sbjct: 198 GDWAIAIGNPLGLDNTVTLGIVSSLGRRSSAVGIPDKRLDFIQTDAVINPGNSGGPLVNS 257
Query: 301 HAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLL 337
+GI +RQ GA I IP + LL
Sbjct: 258 RGEVIGINT-AIRQAPGAGIGFAIPVNTAKQIETQLL 293
>sp|Q05954|Y4158_STRCO Uncharacterized HTH-type transcriptional regulator SCO4158
OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2)
/ M145) GN=SCO4158 PE=4 SV=2
Length = 340
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 273 PPRSTTRSLLMADIRCL---PGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAI 329
P TR ++A I+ L P + +G+++ RQ AE+ + W A
Sbjct: 30 PVAPATRERVLAAIKELGYRPDRVAQAMASRRTDLIGLIVPDARQPFFAEMAHAVEWAAS 89
Query: 330 ATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLP 389
L+ E+E+H + L + L+ SH LN + + D+R
Sbjct: 90 ERGKMVLVGNSDYVGEREVHYLRAFLGMRVSGLILVSHALNDNAAAEIDAWDARVVLLHE 149
Query: 390 IQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLE 427
+A+ V ++T D G G L HLLE
Sbjct: 150 RPEAIDDVAVVTDDLG-----------GAQLAVRHLLE 176
>sp|Q9XBF4|MOMPK_CHLPN Major outer membrane porin OS=Chlamydia pneumoniae GN=ompA PE=2
SV=2
Length = 389
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 139 IPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGV--VKTSIESNKISLMESH 196
+P + + S+ + HEW+VG SL+ NS P +GV + + +++ I + +
Sbjct: 246 LPTDAGVATATGTKSATINYHEWQVGASLSYRLNSLVPYIGVQWSRATFDADNIRIAQPK 305
Query: 197 RPFAMEESS--NLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNK 239
P A+ + N SL+ +T+ L S D I +NK
Sbjct: 306 LPTAVLNLTAWNPSLLGNTTT----LATSDSFSDFMQIVSCQINK 346
>sp|O82261|DEGP2_ARATH Protease Do-like 2, chloroplastic OS=Arabidopsis thaliana GN=DEGP2
PE=1 SV=2
Length = 607
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 217 VAILGVSS--YLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVA----N 270
+A+L V S + K + L L + D + VG P G + SV+ G V+
Sbjct: 191 IALLSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTI-----SVTKGVVSRIEVT 245
Query: 271 CYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIA 330
Y S+ + D PG GGP F + +G+ + R + I VIP ++
Sbjct: 246 SYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVS 305
Query: 331 TACSD 335
+D
Sbjct: 306 HFLTD 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,935,085
Number of Sequences: 539616
Number of extensions: 9253989
Number of successful extensions: 19158
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 19121
Number of HSP's gapped (non-prelim): 37
length of query: 566
length of database: 191,569,459
effective HSP length: 123
effective length of query: 443
effective length of database: 125,196,691
effective search space: 55462134113
effective search space used: 55462134113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)