BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008427
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/568 (46%), Positives = 373/568 (65%), Gaps = 22/568 (3%)
Query: 3 LKSLPSSKE-STKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKL 61
+ +PSS S+ DE R +++ PSIWGD F+N DK +AE EKR + LK EV K+
Sbjct: 5 VSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKM 62
Query: 62 L---MSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHN 118
+ M+N+T + + +D +QRLGV+YHF EI+++L++IY++ N D
Sbjct: 63 IVAPMANST------QKLAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAE 108
Query: 119 NDLYTVALRFRLLRQHGYKVSADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGE 178
NDLYT ++RFRLLR+HGY VS D+ + +T+D RGLL LY+ASYLRV GE
Sbjct: 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGE 168
Query: 179 NILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTR 238
+IL+EA F+ HL + + L+ +V H+L+ + RG+PR+EAR Y+S+Y+ D +
Sbjct: 169 DILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESH 227
Query: 239 NELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 298
N+ +LE AK+DFN+LQ LHR+ELSEI RWWKD+DF KLP+ARDR+VE YFWI GVYFEP
Sbjct: 228 NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEP 287
Query: 299 KYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFA 358
+YS+ RK +TK+IA+AS++DD YD Y T EEL +T+AIERW++ +E+P+YM+ Y A
Sbjct: 288 QYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKA 347
Query: 359 LLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMS 418
LLDV +EM + YAK A+ L ++Y VEAKW Y P+FEE+ N+ +
Sbjct: 348 LLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407
Query: 419 SGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAP 478
GY MLA+ + VG+ D+ +T + WA S PKII+ S++I R DDV +K + R D
Sbjct: 408 CGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDC 466
Query: 479 SSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL 538
S++ECYM++YGV+ +EA + + VE W ++N+E P P + L SLNLAR+M VL
Sbjct: 467 SAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVL 526
Query: 539 YQNGDGYTNSSGKTKDRIASLLVDPLPM 566
Y+ GDGYT K I SLL++P+ +
Sbjct: 527 YREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 345/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S ++ + K E LK + +L++ + + + L
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 72
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 123
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 124 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 183
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 184 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 242
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 243 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIV 302
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 303 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 362
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y +LA + +G++ +
Sbjct: 363 IVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMK--SA 420
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 481 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHI 540
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 541 INLLVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 345/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S +++ + K E LK + +L++ + + + L
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 70
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 121
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 182 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 240
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 418
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 538
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 539 INLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 346/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S +++ + + E LK + +L++ + + + + L
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAE-KYAQEIEALKEQTRSMLLATG---RKLADTLNL 70
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI E L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 121
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 182 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 240
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 418
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 538
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 539 INLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 346/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S +++ + + E LK + +L++ + + + + L
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAE-KYAQEIEALKEQTRSMLLATG---RKLADTLNL 70
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI E L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 121
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 182 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 240
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 418
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 539 INLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 344/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S ++ + K E LK + +L++ + + + L
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 72
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 123
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 124 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 183
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 184 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 242
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 243 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 302
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 303 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 362
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 363 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 420
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 481 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 540
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 541 INLLVDSIKI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 344/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S ++ + K E LK + +L++ + + + L
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 57
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 58 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 108
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 109 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 168
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 169 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 227
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 228 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 287
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 288 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 347
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 348 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 405
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 406 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 465
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 466 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 525
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 526 INLLVDSIKI 535
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/550 (42%), Positives = 345/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S +++ + K E LK + +L++ + + + L
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 70
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 121
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 182 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 240
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 418
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 539 INLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/550 (42%), Positives = 344/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S +++ + K E LK + +L++ + + + L
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 70
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 121
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 182 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 240
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYF LGVYFEP+YS R + K I++ S++
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 418
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 539 INLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/550 (42%), Positives = 344/550 (62%), Gaps = 18/550 (3%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R +++ PS+WGD F++ S +++ + K E LK + +L++ + + + L
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMK---LADTLNL 70
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D ++RLG++YHFE EI + L IYN NSNC NDL T AL+FRLLRQHG+ +
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQHGFNI 121
Query: 139 SADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH 198
S +I L +D GLL LYEAS++R ++ILE+A FS HL+S PH
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 199 ISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQELH 257
+ + L QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH
Sbjct: 182 LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLH 240
Query: 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI 317
++EL+++SRWWKD+DF T LP+ARDR+VECYF LGVYFEP+YS R + K I++ S++
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPG 377
DD +D YGT++EL+ +T AI+RW++ + LP YM++ Y A+LD+ K+ E + +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAI 437
+ +A E +K +VR Y VE+ WF Y P EY+ N+ ++ Y LA + +G++ +
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SA 418
Query: 438 TKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACN 497
T+Q +W PKI+ S +I R+ DD TY+VE+ RG + +EC M+ YG+S +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 498 KIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSSGKTKDRI 556
K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+ K I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 557 ASLLVDPLPM 566
+LLVD + +
Sbjct: 539 INLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/554 (37%), Positives = 316/554 (57%), Gaps = 18/554 (3%)
Query: 15 ADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEK-RFETLKAEVEKLLMSNNTAWKTIE 73
E RRS++Y P+ W F+ S D+ + EV K + + L+AEV + + + + T+
Sbjct: 11 GSEARRSADYEPNSWDYDFLLSSDTDE--SIEVYKDKAKKLEAEVRREINNEKAEFLTLL 68
Query: 74 EIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDH--NNDLYTVALRFRLL 131
E L+D +QRLG+ Y FE++I+ L +S +D L+ AL FRLL
Sbjct: 69 E---LIDNVQRLGLGYRFESDIRRALDRFVSSG-------GFDGVTKTSLHATALSFRLL 118
Query: 132 RQHGYKVSADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKH 191
RQHG++VS + L D + +L LYEAS+L ++GENIL+EA F+ H
Sbjct: 119 RQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISH 178
Query: 192 LKSLLPH-ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 250
LK L I LA QV H+LE+PLHR RLEA I Y N+++LELA LD+
Sbjct: 179 LKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA-NQVLLELAILDY 237
Query: 251 NLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKI 310
N++Q +++R+L E SRWW+ + ATKL FARDRL+E ++W +GV FEP+YS R + K+
Sbjct: 238 NMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKM 297
Query: 311 IAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKP 370
+ ++IDDIYDVYGTL+EL+LFT A+ERW+V A N+LP YM++C+ AL + + E+
Sbjct: 298 FSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDN 357
Query: 371 VNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALV 430
+ + + Y +A L A+ EAKW K PTF++Y N+ SS P+ + A
Sbjct: 358 LKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYF 417
Query: 431 GLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGV 490
+ I K+ ++ II S I RL +D+ + E RG+ +SV CYM+ G+
Sbjct: 418 AVV-QNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGI 476
Query: 491 SEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSG 550
SEE A + +++ W +N+E + ++ ++NLAR Y NGD +T+
Sbjct: 477 SEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDE 536
Query: 551 KTKDRIASLLVDPL 564
T+ R+ S++ +P+
Sbjct: 537 LTRKRVLSVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 205/560 (36%), Positives = 306/560 (54%), Gaps = 23/560 (4%)
Query: 14 KADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIE 73
+A + RRS NY P++W ++I S N Y R L +V LL + +E
Sbjct: 1 EAHQIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLE 59
Query: 74 EIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNN-----DLYTVALRF 128
L+ L+ LG++ F++EIKE L IYN H C HNN DLY AL F
Sbjct: 60 ----LIHDLKYLGLSDFFQDEIKEILGVIYNEH---KCF----HNNEVEKMDLYFTALGF 108
Query: 129 RLLRQHGYKVSADIXX-XXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEF 187
RLLRQHG+ +S D+ A L D +G+L LYEAS+L +GE+ LE A EF
Sbjct: 109 RLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREF 168
Query: 188 SRKHLKSLLPH----ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 243
+ K L+ L I +L + HSL++PLH + +EAR +I Y A N LI
Sbjct: 169 ATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAY-ARRPDMNPLIF 227
Query: 244 ELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSIT 303
ELAKL+FN++Q H++EL ++SRWW + F KLPF RDRLVE +FW +G++ ++
Sbjct: 228 ELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQ 287
Query: 304 RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVV 363
RK II +A+VIDDIYDVYGTL+EL+LFT +RW+ + LP YMQ+CY+ + + +
Sbjct: 288 RKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYI 347
Query: 364 KEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPM 423
+ + + C+ Y ++++ LV AYF EAKW+++ Y P+ +EY+ + +S P
Sbjct: 348 SDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPA 407
Query: 424 LAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVEC 483
+ + + +D I+ + +I RL DD+ T E RGD P +++C
Sbjct: 408 IISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQC 467
Query: 484 YMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGD 543
YM++ SEEEA +K ++ W ++N I P + + N+ R+ +Y +GD
Sbjct: 468 YMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGD 527
Query: 544 GYTNSSGKTKDRIASLLVDP 563
G+ KT + IA LL +P
Sbjct: 528 GFGVQHSKTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/563 (37%), Positives = 307/563 (54%), Gaps = 39/563 (6%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETL---KAEVEKLLMSNNTAWKTIEEI 75
RRS NY+PS W +FI +D + V + E + K E+EK + +E
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEK----ETDQIRQLE-- 55
Query: 76 VTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHN------NDLYTVALRFR 129
L+D LQR+G++ HF+NE KE L SIY H +Y N DLY+ +L FR
Sbjct: 56 --LIDDLQRMGLSDHFQNEFKEILSSIYLDH-------HYYKNPFPKEERDLYSTSLAFR 106
Query: 130 LLRQHGYKVSADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSR 189
LLR+HG++V+ ++ L++D RGLL LYEAS+L +GE LE A EF+
Sbjct: 107 LLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFAT 166
Query: 190 KHLKSLL--PHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAK 247
K L+ + + L ++ +SL+IPLH + R A +I Y N ++LELA
Sbjct: 167 KFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRK-RPDMNPVVLELAI 225
Query: 248 LDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFM 307
LD N++Q + EL E RWW++ F KLPFARDRLVECYFW G+ +++ R M
Sbjct: 226 LDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMM 285
Query: 308 TKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKE-- 365
K+ A+ +VIDDIYDVYGTLEEL+ FT I RW++ + ++LP YMQ+C+ AL + V +
Sbjct: 286 GKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTS 345
Query: 366 ---MEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYP 422
M++K VN P Y +++ L Y VEA+WF + P+ EEY+ENS S P
Sbjct: 346 YDVMKEKGVNVIP-----YLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGP 400
Query: 423 MLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVE 482
+ + D + TK+ +D ++R+SS + RL DD+ T E RGD P S++
Sbjct: 401 CMLTHIFFRVTD-SFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQ 459
Query: 483 CYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHP-PLQWLLPSLNLARMMVVLYQN 541
CYM Y SE EA +K ++ W +N E + P ++ +++L RM ++Y N
Sbjct: 460 CYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHN 519
Query: 542 GDGYTNSSGKTKDRIASLLVDPL 564
GDG+ ++ L +P
Sbjct: 520 GDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 202/531 (38%), Positives = 299/531 (56%), Gaps = 22/531 (4%)
Query: 20 RSSNYHPSIWGDHFINVSSND-KYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTL 78
R+ Y P++W F + S D +Y + R + +V+ +L + + +E L
Sbjct: 36 RTGGYQPTLWD--FSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLE----L 89
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKV 138
+D L+RLG++ HFE EI E L S Y + N+ D DLY+ ALRFRLLRQ+ + V
Sbjct: 90 IDDLRRLGISCHFEREIVEILNSKY--YTNNEID-----ERDLYSTALRFRLLRQYDFSV 142
Query: 139 SADIXX-XXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHL-KSLL 196
S ++ L +D RGLL LYEAS+L QGE L A +F+ K L K +L
Sbjct: 143 SQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVL 202
Query: 197 PHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQEL 256
+L + +E +LE+P H + AR +I Y+ N +LELAKLDFN++Q
Sbjct: 203 VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKR-RPDMNPTVLELAKLDFNMVQAQ 261
Query: 257 HRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASV 316
++EL E SRWW +LPF RDR+VECY+W GV ++ R +TKI A+ +
Sbjct: 262 FQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTT 321
Query: 317 IDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPP 376
IDD++D+YGTLEEL+LFT AI+RW++ + +LP YMQ+CY AL + V EM + +
Sbjct: 322 IDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF 381
Query: 377 GCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMS-SGYPMLAVEALVGLEDM 435
Y ++ GL+ +Y +EAKW+ + P+ EEYM+NS +S G P+L+ L D
Sbjct: 382 DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS-HLFFRLTD- 439
Query: 436 AITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEA 495
+I ++A + I+R S I RL DD+ T E ERGD P SV+CYM + SEEEA
Sbjct: 440 SIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEA 499
Query: 496 CNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQN-GDGY 545
++ +++ W +N+E+ + ++ S NLARM +YQ+ DG+
Sbjct: 500 REHVRSLIDQTWKMMNKEMMTSSFSKY-FVEVSANLARMAQWIYQHESDGF 549
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 287/525 (54%), Gaps = 39/525 (7%)
Query: 74 EIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNN---DLYTVALRFRL 130
E + +VD + RLG+ HFE EIKE L +Y H N + + N DL T AL FRL
Sbjct: 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVYR-HWNER-GIGWGRLNPIADLETTALGFRL 357
Query: 131 LRQHGYKVSADIX---XXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGENILEEACEF 187
LR H Y VS I D +L LY AS L GENIL+EA F
Sbjct: 358 LRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSF 417
Query: 188 SRKHLKSLLPHISTS--------LANQVEHSLEIPLHRGMPRLEARQYISIYEADNS--- 236
+ K+L+ L TS L+ +++++L+ H +PR+EA++Y +Y D +
Sbjct: 418 ATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIA 477
Query: 237 --------TRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLP---FARDRLV 285
NE LEL KLDFN++Q +H+ E+ ++ W++D + LP FAR+R +
Sbjct: 478 KCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGLPLFTFARERPL 533
Query: 286 ECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAA 345
E YF + +EP+Y+ R TK+ + +V+DD+YD YGTL+ELKLFT A+ RW+++
Sbjct: 534 EFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFT 593
Query: 346 NELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYV 405
LP YM++CY D+V E+ + ++ + + ++ + + Y+ EA+W A+YV
Sbjct: 594 ENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYV 653
Query: 406 PTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPK---IIRYSSLIARLD 462
PT +EY++N S G +L + ++ ++ ++++AL+ + P + +SLI+RL
Sbjct: 654 PTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE-KVDYPGRRVLTELNSLISRLA 712
Query: 463 DDVRTYKVEQERGDAPSSVECYMQQYG-VSEEEACNKIKEMVEIEWMNINEEIQDPNHPP 521
DD +TYK E+ RG+ SS+ECYM+ + +EEEA + I ++E + E P+ P
Sbjct: 713 DDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772
Query: 522 LQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM 566
R+ +V++++GDG+ S + KD I L++PLP+
Sbjct: 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 19 RRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLL 62
RR++N HP++WG ++ S Y ++ +R E L +E++ +L
Sbjct: 25 RRTANPHPNVWGYDLVH-SLKSPYIDSSYRERAEVLVSEIKAML 67
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/514 (31%), Positives = 275/514 (53%), Gaps = 34/514 (6%)
Query: 79 VDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNN---DLYTVALRFRLLRQHG 135
VD ++RLG+ HF+ EIKE L +Y SH + + + N D+ A+ R+LR HG
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVY-SHWDER-GIGWARENPVPDIDDTAMGLRILRLHG 334
Query: 136 YKVSADIXXXXXXXXXXXXAMLTNDARG---LLCLYEASYLRVQGENILEEACEFSRKHL 192
Y VS+D+ L RG +L + S++ GE I+EEA + ++L
Sbjct: 335 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYL 394
Query: 193 KSLLPHIST--------SLANQVEHSLEIPLHRGMPRLEARQYISIYEADNS-------- 236
++ L ++ ++ +VE++L+ P H+ MPRLEAR YI Y D+
Sbjct: 395 RNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYM 454
Query: 237 ---TRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILG 293
NE LELAKLDFN +Q +H+ EL ++ RWWK F T L F R+R+ E YF
Sbjct: 455 MPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPAS 513
Query: 294 VYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQ 353
FEP++S R+ TK ++DD+YD +G+L++LKLFT +++RW+++ +++P+ M+
Sbjct: 514 FIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMK 573
Query: 354 VCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYME 413
+C+ + ++ + ++ + Y + K + AY EA+W AKYVP+F EY+E
Sbjct: 574 ICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIE 633
Query: 414 NSTMSSGY-PMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQ 472
N+++S ++ + AL E +T + L + ++ L RL +D +TY+ E+
Sbjct: 634 NASVSIALGTVVLISALFTGE--VLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAER 691
Query: 473 ERGDAPSSVECYMQQY-GVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 531
+G+ S+++CYM+ + +SEEEA + ++E +N E + P + L
Sbjct: 692 GQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKRL-VFET 750
Query: 532 ARMMVVLYQNGDGYTNSSG-KTKDRIASLLVDPL 564
AR+M + Y GDG T S + K+ + + L P+
Sbjct: 751 ARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 163/513 (31%), Positives = 262/513 (51%), Gaps = 28/513 (5%)
Query: 74 EIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDH-NNDLYTVALRFRLLR 132
E ++LVD ++ LG+ HF+ EIK L +Y D DL T AL R LR
Sbjct: 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLR 307
Query: 133 QHGYKVSADIXXXXXXXXXXXXAMLTN---DARGLLCLYEASYLRVQGENILEEACEFSR 189
HGY VS+D+ + + R ++ L+ AS L E +++A +F+
Sbjct: 308 MHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAE 367
Query: 190 KHLK-SLLPHISTS--LANQVEHSLEIPLHRGMPRLEARQYISIYEADN----------- 235
+L+ +L IST+ L ++E+ +E P H +PRLEAR YI Y+ DN
Sbjct: 368 PYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYD-DNYVWQRKTLYRM 426
Query: 236 -STRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGV 294
S N LELAKLDFN++Q LH+ EL ++RWWK+ A + F R R+ E YF
Sbjct: 427 PSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF--SSA 483
Query: 295 YFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQV 354
FEP+YS TR TKI + + DD+ D++ TL+ELK FT ++RW+ + +E+P+ MQ
Sbjct: 484 TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQT 543
Query: 355 CYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMEN 414
C+ +++E+ + V + + + ++ + Y E +W A Y+PTFEEY++
Sbjct: 544 CFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKT 603
Query: 415 STMSSGYPMLAVEALVGLEDMAITKQALDWAISVPK-IIRYSSLIARLDDDVRTYKVEQE 473
+S G ++ ++ + ++ K + + P + SL RL +D +TY+ E+
Sbjct: 604 YAISVGLGPCTLQPILLMGEL--VKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKA 661
Query: 474 RGDAPSSVECYMQQY-GVSEEEACNKIKEMVEIEWMNINEEIQDP-NHPPLQWLLPSLNL 531
RG S + CYM+ G +EE+A I +V+ + E P N P+ NL
Sbjct: 662 RGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNL 721
Query: 532 ARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPL 564
+ + Y+ DGY ++ + KD I + +DP+
Sbjct: 722 RLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 125/267 (46%), Gaps = 24/267 (8%)
Query: 74 EIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHV-NSNCDVNYDHNNDLYTVALRFRLLR 132
E + +VD+LQRLG++ +FE EIKE L ++ N C H D+ A+ FRLLR
Sbjct: 247 EHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLR 306
Query: 133 QHGYKVSADIXXXXXXXXXXXXAMLTND--ARGLLCLYEASYLRVQGENILEEACEFSRK 190
QHGY+VSAD+ + ++ G+ LY AS L E IL+ A EFS
Sbjct: 307 QHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYN 366
Query: 191 HL------KSLLPH--ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNS------ 236
+L + L+ I L ++ +LEIP + +PR+E R YI Y +N
Sbjct: 367 YLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKT 426
Query: 237 ------TRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFW 290
N LELAK D+N Q H+ E +W+++ + ++ R L+ECY+
Sbjct: 427 LYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSELLECYYL 485
Query: 291 ILGVYFEPKYSITRKFMTKIIAIASVI 317
FE + S R K + I
Sbjct: 486 AAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 445 AISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYM 485
A+ +P ++YS ++ D+ TY +R AP V+CY+
Sbjct: 478 ALYLPDKLKYSPSNVKISDNPNTYDYMNKRVVAPGLVDCYI 518
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 445 AISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYM 485
A+ +P ++YS ++ D+ TY +R AP V+CY+
Sbjct: 477 ALYLPDKLKYSPSNVKISDNPNTYDYMNKRVVAPGLVDCYI 517
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|C Chain C, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|D Chain D, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|E Chain E, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|F Chain F, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
Length = 522
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 65 NNTAWKTIEEIVTLVDQL-QRLGVAYHFEN 93
+N +W+ EE++T ++ Q LG+ YH N
Sbjct: 334 DNKSWEMFEEMITTAEEFYQSLGIPYHIVN 363
>pdb|3APU|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein
pdb|3APU|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein
pdb|3APV|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Amitriptyline Complex
pdb|3APV|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Amitriptyline Complex
pdb|3APW|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Disopyramide Complex
pdb|3APW|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Disopyramide Complex
pdb|3APX|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Chlorpromazine Complex
Length = 190
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 166 CLYEASYLRVQGENILEEACEFSRKHLKSLL 196
C Y +SYL VQ EN E R+H+ LL
Sbjct: 73 CFYNSSYLNVQRENGTVSRYEGGREHVAHLL 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,568,802
Number of Sequences: 62578
Number of extensions: 665151
Number of successful extensions: 1904
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1791
Number of HSP's gapped (non-prelim): 33
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)