Query 008427
Match_columns 566
No_of_seqs 234 out of 901
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 12:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 1E-153 3E-158 1272.8 53.0 533 19-563 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 1E-137 3E-142 1167.0 45.8 481 71-566 269-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 2E-109 4E-114 933.8 41.6 449 71-565 309-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 2.1E-56 4.6E-61 427.7 13.2 174 29-211 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 2E-48 4.3E-53 394.2 20.2 269 242-511 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 5.1E-46 1.1E-50 379.2 29.8 283 256-539 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 3.1E-34 6.7E-39 296.6 22.6 248 260-514 14-265 (303)
8 PLN02150 terpene synthase/cycl 100.0 1.9E-31 4.1E-36 230.0 10.1 95 472-566 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 9.2E-21 2E-25 184.9 13.0 229 290-533 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.6 0.0023 5E-08 67.8 16.0 196 298-513 79-276 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.3 0.0037 8.1E-08 65.3 13.7 209 300-534 81-294 (357)
12 PF00494 SQS_PSY: Squalene/phy 93.6 4.6 9.9E-05 40.9 17.3 202 301-530 17-236 (267)
13 cd00867 Trans_IPPS Trans-Isopr 91.0 3.6 7.7E-05 40.7 12.4 118 378-512 86-214 (236)
14 cd00683 Trans_IPPS_HH Trans-Is 86.9 38 0.00082 34.4 17.4 196 301-533 23-237 (265)
15 cd00685 Trans_IPPS_HT Trans-Is 86.2 13 0.00029 37.6 13.1 120 378-512 109-239 (259)
16 TIGR03465 HpnD squalene syntha 84.0 52 0.0011 33.5 19.7 197 302-531 18-226 (266)
17 TIGR03464 HpnC squalene syntha 82.6 60 0.0013 33.1 19.1 120 287-431 7-130 (266)
18 TIGR02749 prenyl_cyano solanes 78.6 51 0.0011 34.8 14.2 87 378-469 134-220 (322)
19 PLN02890 geranyl diphosphate s 73.7 58 0.0013 35.8 13.4 90 377-471 227-316 (422)
20 PLN02857 octaprenyl-diphosphat 71.5 43 0.00092 36.8 11.7 88 378-470 228-315 (416)
21 COG0142 IspA Geranylgeranyl py 70.0 80 0.0017 33.3 13.1 108 378-491 135-252 (322)
22 TIGR02748 GerC3_HepT heptapren 65.5 1.4E+02 0.0029 31.5 13.7 87 378-470 130-217 (319)
23 PRK10888 octaprenyl diphosphat 57.7 2.5E+02 0.0055 29.6 14.1 88 378-470 131-218 (323)
24 KOG1719 Dual specificity phosp 56.8 9.2 0.0002 36.2 2.6 30 472-501 118-148 (183)
25 PF10776 DUF2600: Protein of u 54.6 2.9E+02 0.0064 29.4 19.6 100 427-544 197-296 (330)
26 CHL00151 preA prenyl transfera 51.5 1.6E+02 0.0035 31.0 11.4 87 378-470 135-222 (323)
27 PF03861 ANTAR: ANTAR domain; 50.9 16 0.00034 28.2 2.7 28 477-504 15-42 (56)
28 COG3707 AmiR Response regulato 49.8 14 0.0003 36.1 2.8 47 458-504 127-174 (194)
29 PLN02632 phytoene synthase 46.9 3.8E+02 0.0082 28.4 19.4 190 302-525 73-281 (334)
30 PF13798 PCYCGC: Protein of un 37.6 40 0.00086 31.9 3.7 33 484-523 126-158 (158)
31 PRK10581 geranyltranstransfera 33.1 5E+02 0.011 27.1 11.5 113 387-512 152-276 (299)
32 smart00400 ZnF_CHCC zinc finge 30.9 56 0.0012 24.9 3.0 25 475-499 30-54 (55)
33 PF00348 polyprenyl_synt: Poly 30.7 5.4E+02 0.012 25.9 11.1 79 388-471 114-194 (260)
34 COG4738 Predicted transcriptio 26.4 1.9E+02 0.0042 26.0 5.8 83 76-169 14-102 (124)
35 PF12368 DUF3650: Protein of u 26.3 52 0.0011 22.1 1.7 18 483-500 9-26 (28)
36 smart00463 SMR Small MutS-rela 25.3 79 0.0017 25.8 3.2 23 488-510 7-29 (80)
37 PF01713 Smr: Smr domain; Int 23.2 88 0.0019 25.7 3.1 26 488-513 4-29 (83)
38 COG1093 SUI2 Translation initi 22.9 1.1E+02 0.0023 31.5 4.0 65 466-533 95-169 (269)
39 COG1308 EGD2 Transcription fac 22.5 83 0.0018 28.5 2.9 22 480-501 87-108 (122)
40 TIGR03486 cas_csx13_C CRISPR-a 21.2 5.2E+02 0.011 24.4 7.9 13 399-411 112-124 (152)
41 PF11848 DUF3368: Domain of un 20.5 71 0.0015 23.8 1.8 20 128-147 25-44 (48)
42 KOG3951 Uncharacterized conser 20.3 1.4E+02 0.003 30.6 4.3 56 148-211 264-319 (321)
43 KOG1720 Protein tyrosine phosp 20.2 89 0.0019 31.2 2.8 103 383-501 83-186 (225)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.2e-153 Score=1272.79 Aligned_cols=533 Identities=53% Similarity=0.919 Sum_probs=511.0
Q ss_pred CCCCCCCCCCCcc-ccccccCCCCCccHHHHHHHHHHHHHHHHHHhc---cccCccchhhHHHHHHHHHHhCcccccHHH
Q 008427 19 RRSSNYHPSIWGD-HFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS---NNTAWKTIEEIVTLVDQLQRLGVAYHFENE 94 (566)
Q Consensus 19 r~~a~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~~~~~~~~l~lID~lqrLGi~~hFe~E 94 (566)
||+++||||+||| +|++++++.. ....+.+++++||++||+||.. +. |++++|++||+||||||+|||++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E 75 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE 75 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence 7899999999999 7777654432 2236889999999999999985 56 899999999999999999999999
Q ss_pred HHHHHHHHHhhc-cCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccC
Q 008427 95 IKEDLQSIYNSH-VNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYL 173 (566)
Q Consensus 95 I~~~L~~i~~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~LYeAs~l 173 (566)
|+++|++||++| +++. .. ..||++|||+|||||||||+||||||++|||++|+|++++.+||+||||||||||+
T Consensus 76 I~~~L~~i~~~~~~~~~--~~---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l 150 (542)
T cd00684 76 IKEILDYIYRYWTERGE--SN---EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHL 150 (542)
T ss_pred HHHHHHHHHHhhccccc--cc---CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhc
Confidence 999999999998 4431 11 57999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhccC---CCCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhhh
Q 008427 174 RVQGENILEEACEFSRKHLKSLLPH---ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 250 (566)
Q Consensus 174 ~~~gE~iLdeA~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelAkldF 250 (566)
++|||+|||||++||++||++++++ ++++|+++|++||++|||+++||||||+||++|+++ +++|++|||||||||
T Consensus 151 ~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldf 229 (542)
T cd00684 151 SFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDF 229 (542)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHH
Confidence 9999999999999999999999986 788999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHH
Q 008427 251 NLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEEL 330 (566)
Q Consensus 251 n~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl 330 (566)
|+||++||+||+++++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|+
T Consensus 230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl 309 (542)
T cd00684 230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL 309 (542)
T ss_pred HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 008427 331 KLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEE 410 (566)
Q Consensus 331 ~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleE 410 (566)
+.||+||+|||+++++.+|+|||+||.++++++++++.++.++++++++.|++++|+++++||++||+|+++||+||++|
T Consensus 310 ~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eE 389 (542)
T cd00684 310 ELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEE 389 (542)
T ss_pred HHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCC
Q 008427 411 YMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGV 490 (566)
Q Consensus 411 Yl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gv 490 (566)
||++|++|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+
T Consensus 390 Yl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~ 468 (542)
T cd00684 390 YMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGV 468 (542)
T ss_pred HHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCC
Confidence 9999999999999999999999999 999999997777999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhccc
Q 008427 491 SEEEACNKIKEMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDP 563 (566)
Q Consensus 491 S~EeA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~p 563 (566)
|+|+|+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||++|
T Consensus 469 s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 469 SEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999999999999998 7899999999999999999999999999999878999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.3e-137 Score=1166.97 Aligned_cols=481 Identities=28% Similarity=0.462 Sum_probs=457.8
Q ss_pred chhhHHHHHHHHHHhCcccccHHHHHHHHHHHHhhc-cCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008427 71 TIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSH-VNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDE 149 (566)
Q Consensus 71 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~ 149 (566)
++++++|+||+||||||+|||++||+++|+++|++| +.+.+ . ..|+++|||+|||||||||+||||||++|+|+
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~--~---~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~ 343 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEE--I---FLDLATCALAFRILRLNGYDVSSDPLKQFAED 343 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccC--C---CCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC
Confidence 789999999999999999999999999999999999 43221 1 57999999999999999999999999999965
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhccC-------CCCcHHHHHHHHccCcccCCc
Q 008427 150 KGEFKAML---TNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH-------ISTSLANQVEHSLEIPLHRGM 219 (566)
Q Consensus 150 ~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~ 219 (566)
+ |++++ .+||+||||||||||+++|||.|||||+.||++||++.++. ++++|++||+|||++|||+++
T Consensus 344 -~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l 421 (784)
T PLN02279 344 -H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANL 421 (784)
T ss_pred -c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCc
Confidence 4 99988 59999999999999999999999999999999999998774 567899999999999999999
Q ss_pred chHHHhhhHHhhhcCCcc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHh
Q 008427 220 PRLEARQYISIYEADNST------------RNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVEC 287 (566)
Q Consensus 220 ~rlear~yI~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~ 287 (566)
||||||+||++|+++ +. +|++||||||+|||+||++||+||++++|||+++|| .++||||||++||
T Consensus 422 ~RlEaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~ 499 (784)
T PLN02279 422 ERLANRRSIENYAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYC 499 (784)
T ss_pred cHHHHHHHHHHhccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHH
Confidence 999999999999988 64 899999999999999999999999999999999999 6999999999999
Q ss_pred HHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhh-hhccCChhHHHHHHHHHHHHHHH
Q 008427 288 YFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVA-AANELPKYMQVCYFALLDVVKEM 366 (566)
Q Consensus 288 yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~-~~~~lPe~mk~~~~al~~~~~ei 366 (566)
|||++|++|||+||.+|++|||.+++++++||+||+|||+|||+.||+||+|||.+ .++.+|+|||+||.+++++++|+
T Consensus 500 Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei 579 (784)
T PLN02279 500 YFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEI 579 (784)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 56899999999999999999999
Q ss_pred Hhch-hccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhc
Q 008427 367 EDKP-VNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWA 445 (566)
Q Consensus 367 ~~~~-~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~ 445 (566)
+.++ .++|+ ++.+|++++|++++++|++||+|+++||+||++|||+|+.+|+|++++++.+++++|.. +|+++++|
T Consensus 580 ~~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~-l~eev~e~- 656 (784)
T PLN02279 580 GDKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPK-LSEEVVDS- 656 (784)
T ss_pred HHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCC-CCHHHHhC-
Confidence 9775 46666 78999999999999999999999999999999999999999999999989899999998 99999999
Q ss_pred cchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCC
Q 008427 446 ISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQY--GVSEEEACNKIKEMVEIEWMNINEEIQDP--NHPP 521 (566)
Q Consensus 446 ~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~--gvS~EeA~~~i~~~i~~~wk~ln~e~l~~--~~~p 521 (566)
+++|+|+++++.|+||+|||+||++|+++|++ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|
T Consensus 657 ~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp 735 (784)
T PLN02279 657 PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVP 735 (784)
T ss_pred cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 79999999999999999999999999999998 9999999996 89999999999999999999999999964 5799
Q ss_pred hhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008427 522 LQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM 566 (566)
Q Consensus 522 ~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 566 (566)
++|++++||++|++++||+++||||.+ .||++|++||++|||+
T Consensus 736 ~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 736 RECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHHHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 999999999999999999999999975 5999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.8e-109 Score=933.80 Aligned_cols=449 Identities=27% Similarity=0.390 Sum_probs=405.3
Q ss_pred chhhHHHHHHHHHHhCcccccHHHHHHHHHHHHhhc-cCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008427 71 TIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSH-VNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDE 149 (566)
Q Consensus 71 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~ 149 (566)
+++++|++||+||||||+|||++||+++|+++|++| ++++++.......|+++|||+|||||||||+||||||++|++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~- 387 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK- 387 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-
Confidence 789999999999999999999999999999999999 555433210014799999999999999999999999999996
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhcc--C------CCCcHHHHHHHHccCcccCC
Q 008427 150 KGEFKAML---TNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLP--H------ISTSLANQVEHSLEIPLHRG 218 (566)
Q Consensus 150 ~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~~~ 218 (566)
+|+|++.+ .+|++|||+||||||+++|||.|||+|+.||++||++.+. + ++++|+++|+|||++|||++
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 89999765 7999999999999999999999999999999999999853 1 35789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc-------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHH
Q 008427 219 MPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLV 285 (566)
Q Consensus 219 ~~rlear~yI~~Y~~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 285 (566)
+||||||+||++|+++ ++ +|++||||||+|||+||++||+||++++|||+++|| .++||||||++
T Consensus 468 l~RlEaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~v 545 (800)
T PLN02592 468 LPRVETRFYIEQYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELL 545 (800)
T ss_pred cchHHHHHHHHHhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHH
Confidence 9999999999999977 55 499999999999999999999999999999999999 49999999999
Q ss_pred HhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHH--------HhhhhhhccCCh------h
Q 008427 286 ECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE--------RWEVAAANELPK------Y 351 (566)
Q Consensus 286 e~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~--------rWd~~~~~~lPe------~ 351 (566)
|||||++|++|||+||.+|+++||++++++++||+||+|||+|||++||++|+ |||.+.+++||+ |
T Consensus 546 e~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~ 625 (800)
T PLN02592 546 LAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKT 625 (800)
T ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhH
Confidence 99999999999999999999999999999999999999999999999999997 999999999988 9
Q ss_pred HHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHH-
Q 008427 352 MQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALV- 430 (566)
Q Consensus 352 mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~- 430 (566)
||+||.|+++++|+++.++.+.+|.++.+|++++|.++|+ +|..+|+ +|+|+..+++++++
T Consensus 626 mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~l 687 (800)
T PLN02592 626 GEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTINL 687 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHHH
Confidence 9999999999999998777665555789999999999999 5666665 45566767777777
Q ss_pred hcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcC-CCHHHHHHHHHHHHHHHHHH
Q 008427 431 GLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYG-VSEEEACNKIKEMVEIEWMN 509 (566)
Q Consensus 431 ~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~g-vS~EeA~~~i~~~i~~~wk~ 509 (566)
.+|.. +|+++++ +|++.++++.+.||+||++|+++|... .| +++ +|.+++.+.|+.++++
T Consensus 688 ~~g~~-lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~e 748 (800)
T PLN02592 688 TAGRS-LSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQE 748 (800)
T ss_pred hcCCC-CCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHHH
Confidence 55998 9999987 589999999999999999999998741 23 455 8999999999999999
Q ss_pred HHHhhcC--CCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008427 510 INEEIQD--PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLP 565 (566)
Q Consensus 510 ln~e~l~--~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 565 (566)
+.+.+++ ++.||++||+.|||++| +||.. ||+.|. .|++||+.||++||+
T Consensus 749 L~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~~-~~~~~i~~vl~epv~ 800 (800)
T PLN02592 749 LVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDPG-TINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCHH-HHHHHHHHHhCCCCC
Confidence 9999996 35699999999999999 45654 999994 699999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.1e-56 Score=427.73 Aligned_cols=174 Identities=54% Similarity=0.863 Sum_probs=148.1
Q ss_pred Ccccccc-----ccCCCCCccHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHhCcccccHHHHHHHHHHHH
Q 008427 29 WGDHFIN-----VSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIY 103 (566)
Q Consensus 29 W~~~fl~-----~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~ 103 (566)
|||+||+ ++++.....+.+.+++++||++||.||..... |++++|+|||+||||||+|||++||+++|++||
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~---d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYP---DPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSS---HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 9999994 32221223578899999999999999986542 899999999999999999999999999999999
Q ss_pred hhc-cCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccCCCCCchHHH
Q 008427 104 NSH-VNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILE 182 (566)
Q Consensus 104 ~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 182 (566)
+.| .++. . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+|||
T Consensus 78 ~~~~~~~~---~---~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLd 151 (183)
T PF01397_consen 78 RSWDEDNE---E---IDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILD 151 (183)
T ss_dssp HTTTTTSH---T---SSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHH
T ss_pred hhcccccc---c---cCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHH
Confidence 998 3321 1 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCC---cHHHHHHHHc
Q 008427 183 EACEFSRKHLKSLLPHIST---SLANQVEHSL 211 (566)
Q Consensus 183 eA~~ft~~~L~~~~~~~~~---~l~~~V~~aL 211 (566)
||+.||++||++.+++..+ +|+++|++||
T Consensus 152 eA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 152 EARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 9999999999999886543 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=2e-48 Score=394.18 Aligned_cols=269 Identities=30% Similarity=0.414 Sum_probs=246.1
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhh
Q 008427 242 ILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIY 321 (566)
Q Consensus 242 lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~f 321 (566)
+|+|||+|||+||++||+|++++++||+++|+..+.+.+|+|++.++|+.++++++|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999667777799999999999999999996667779999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhcc-CCCcchHHHHHHHHHHHHHHHHHHHHh
Q 008427 322 DVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNK-EPPGCMHYAKEAIKGLVRAYFVEAKWF 400 (566)
Q Consensus 322 D~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~-~~~~~~~~~k~~w~~~~~a~l~EA~W~ 400 (566)
|.+|+.++++.|++++.||++.....+|+.+++++.++.++++++...+.+. ++..+..+|+++|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888788899999999999999999998777663 221256779999999999999999999
Q ss_pred hCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCch
Q 008427 401 NAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSS 480 (566)
Q Consensus 401 ~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~ 480 (566)
..|++||++||+++|+.|+|+++++.++++++|.. ++++..+++...+.+.++++.+++|+|||+||+||+++|+.+|+
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~ 239 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFA-LGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNL 239 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSC-HTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCc-cccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccH
Confidence 99999999999999999999999999999999766 66666665556677999999999999999999999999999999
Q ss_pred hhHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008427 481 VECYMQQYGVSEEEACNKIKEMVEIEWMNIN 511 (566)
Q Consensus 481 V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 511 (566)
|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 240 v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 240 VVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=5.1e-46 Score=379.23 Aligned_cols=283 Identities=51% Similarity=0.919 Sum_probs=265.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHH
Q 008427 256 LHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 335 (566)
Q Consensus 256 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ 335 (566)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976655999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 008427 336 AIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENS 415 (566)
Q Consensus 336 ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~ 415 (566)
+++||+....+.+|+++++++.++.++++++...+.++++.....++++.|.+++.++.+|++|+..|++||++||+.+|
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999988888999999999999999999999888776666789999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCCHHHH
Q 008427 416 TMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEA 495 (566)
Q Consensus 416 ~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~EeA 495 (566)
+.|+|+++++.++++++|.. +|++.+.+.+..+++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++|
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~-l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA 239 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDI-LPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEA 239 (284)
T ss_pred eehhhHHHHHHHHHHHcCCC-CCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHH
Confidence 99999999999999999999 99944444499999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhchhc
Q 008427 496 CNKIKEMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLY 539 (566)
Q Consensus 496 ~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y 539 (566)
++++.++++++|+++++.+.+. ++.|+.+++.+.|++|.....|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 240 LEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999999864 3678999999999999886654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=3.1e-34 Score=296.59 Aligned_cols=248 Identities=17% Similarity=0.120 Sum_probs=219.6
Q ss_pred HHHH-HHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhH-HHHHHHHHHHHHhhhhccc-CCHHHHHHHHHH
Q 008427 260 ELSE-ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRK-FMTKIIAIASVIDDIYDVY-GTLEELKLFTHA 336 (566)
Q Consensus 260 El~~-lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~viDD~fD~y-gt~eEl~~ft~a 336 (566)
+++. ...|.++.|+. .-+.+|+++..++|+.++.++.|+++..|+ ++|++++|+|++||+||.. +++++++.+++.
T Consensus 14 ~~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~ 92 (303)
T cd00687 14 EAQDEYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTR 92 (303)
T ss_pred HHHHHHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHH
Confidence 4444 45799999774 334699999999899888888999999999 7789999999999999987 499999999998
Q ss_pred HHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcc
Q 008427 337 IERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENST 416 (566)
Q Consensus 337 i~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~ 416 (566)
+.++.......-|....++..++.+++.++...+.+ ....+|++.|.+++.++++|++|+.+|++||++||+++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~~----~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~ 168 (303)
T cd00687 93 LLDILRGDGLDSPDDATPLEFGLADLWRRTLARMSA----EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRR 168 (303)
T ss_pred HHhccCCCCCCCCCCCCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhh
Confidence 888744322111577889999999999999765543 3478999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhh-cCCCCCchhhHHHhhcCCCHHHH
Q 008427 417 MSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQ-ERGDAPSSVECYMQQYGVSEEEA 495 (566)
Q Consensus 417 ~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~-~rGd~~n~V~cyMke~gvS~EeA 495 (566)
.|+|+++++.++++++|.. +|+++.++ +...+++++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|+|
T Consensus 169 ~~~g~~~~~~l~~~~~g~~-lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA 246 (303)
T cd00687 169 FNIGADPCLGLSEFIGGPE-VPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEA 246 (303)
T ss_pred hcccccccHHHHHHhcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHH
Confidence 9999999999999999998 99999988 778899999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008427 496 CNKIKEMVEIEWMNINEEI 514 (566)
Q Consensus 496 ~~~i~~~i~~~wk~ln~e~ 514 (566)
++++.++++++++++.+..
T Consensus 247 ~~~~~~~~~~~~~~f~~~~ 265 (303)
T cd00687 247 ISVVRDMHNERITQFEELE 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987644
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=1.9e-31 Score=230.03 Aligned_cols=95 Identities=41% Similarity=0.706 Sum_probs=92.5
Q ss_pred hcCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchh-cccCCCCCCCCh
Q 008427 472 QERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL-YQNGDGYTNSSG 550 (566)
Q Consensus 472 ~~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~-Y~~~Dg~t~~~~ 550 (566)
++|||++|+|+|||||||+|+|||++++++||+++||++|+|||+++++|++++++++|+||+++|+ |+++||||.++.
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999 999999999887
Q ss_pred hHHHHHHhhhcccCCC
Q 008427 551 KTKDRIASLLVDPLPM 566 (566)
Q Consensus 551 ~~k~~i~~ll~~pi~~ 566 (566)
.+|++|++||++||||
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.84 E-value=9.2e-21 Score=184.92 Aligned_cols=229 Identities=29% Similarity=0.363 Sum_probs=185.5
Q ss_pred HhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhc
Q 008427 290 WILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDK 369 (566)
Q Consensus 290 ~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~ 369 (566)
+.++.++.|+++..|..++++.+|++++||++|..++..........+ .....|..+...+..+...++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 455667788888999999999999999999999888766655544332 12345677778888888999988654
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchh
Q 008427 370 PVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVP 449 (566)
Q Consensus 370 ~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~ 449 (566)
.. .....++.+.|.+++.|+..|+.|... ++||++||+..+..++ +.++..+...+++.. .++ ..+.+...
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 146 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLS-GGE--AELLEALR 146 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHh-CCC--HHHHHHHH
Confidence 33 245889999999999999999999877 8899999999999998 555556666666665 565 33336678
Q ss_pred HHHHHHHhHhhhccCccchhhhhcCC-CCCchhhHHHhhcCC------------CHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008427 450 KIIRYSSLIARLDDDVRTYKVEQERG-DAPSSVECYMQQYGV------------SEEEACNKIKEMVEIEWMNINEEIQD 516 (566)
Q Consensus 450 ~l~~~~~~i~RL~NDI~S~~kE~~rG-d~~n~V~cyMke~gv------------S~EeA~~~i~~~i~~~wk~ln~e~l~ 516 (566)
++...++.+++|.||+.|+.+|.++| +.+|++.++|+++|+ +.++|.+++..+++.+++.+++....
T Consensus 147 ~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (243)
T cd00385 147 KLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILS 226 (243)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999986 678999999999999 88999999999999999999987764
Q ss_pred CCCCChhHHHHHHHHhh
Q 008427 517 PNHPPLQWLLPSLNLAR 533 (566)
Q Consensus 517 ~~~~p~~~~~~~lN~aR 533 (566)
....+..+++.+.++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 227 LPDVPRALLALALNLYR 243 (243)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 33456777777777653
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.57 E-value=0.0023 Score=67.79 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=115.6
Q ss_pred CCCch-hhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCC
Q 008427 298 PKYSI-TRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPP 376 (566)
Q Consensus 298 P~~s~-~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~ 376 (566)
|..+. .+..++=..++++++||.++.. .+++..|-+-+-. ..+- | . ++..++.+.+.++-+... +
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~Q---~-~--p~L~~~~~~L~~~~~~fg----p 144 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQPQ---K-H--PLLDGFASLLREMWRHFG----P 144 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T------S-S--HHHHHHHHHHHHHHTTS-----H
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCCC---C-C--HHHHHHHHHHHHHHHHcc----h
Confidence 65554 5568889999999999998755 4666666654433 1111 1 1 455666666666543332 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHH
Q 008427 377 GCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 377 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
.+-.-+.++--+++.+..-|.+..+ -.|.-..|-..-|.=+|+..+.+...+- ... .|+.. ....+-..+--..
T Consensus 145 f~anmI~~STLdFi~g~~LE~~~f~--~~p~A~~FP~fLR~ktGlsEaYA~FiFP-k~~-fpe~~--~~~~y~~AIpdl~ 218 (376)
T PF06330_consen 145 FCANMIVKSTLDFINGCWLEQKNFH--GSPGAPDFPDFLRRKTGLSEAYAFFIFP-KAL-FPEVE--YFIQYTPAIPDLM 218 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT---TTT-S-TTT--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCC--CCCCCccccHHHHhccCcchhheeeecc-ccc-CChHH--HHHHHHHHHHHHH
Confidence 5566678888999999999987532 2354444555555556666665543321 222 23221 1111222333444
Q ss_pred hHhhhccCccchhhhhc-CCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 008427 457 LIARLDDDVRTYKVEQE-RGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEE 513 (566)
Q Consensus 457 ~i~RL~NDI~S~~kE~~-rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e 513 (566)
..+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+-.-.+-+++.+.
T Consensus 219 ~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~v 276 (376)
T PF06330_consen 219 RFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRV 276 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45669999999999976 7888999988888889999999998866666666665544
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.33 E-value=0.0037 Score=65.29 Aligned_cols=209 Identities=13% Similarity=0.038 Sum_probs=123.7
Q ss_pred CchhhH-HHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcc
Q 008427 300 YSITRK-FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGC 378 (566)
Q Consensus 300 ~s~~Rl-~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 378 (566)
.|..=+ .++-..+.++++||.-|... +.++.|.+-+.. ..+ ... ++...+.+.+..+-+.. |+++
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~~--~~m~~f~~dL~~--G~~-qkh-----P~l~~v~~~l~~~lr~f----GpF~ 146 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GRE-QAH-----PWWALVNEHFPNVLRHF----GPFC 146 (357)
T ss_pred CCHHHHHHHHHHHheeeEecccccccc--hHHHHHHHHHhc--CCC-CCC-----cHHHHHHHHHHHHHHHh----hhhh
Confidence 444433 55666677889999977542 345556544433 111 111 33333333333332211 3355
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHH--
Q 008427 379 MHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSS-- 456 (566)
Q Consensus 379 ~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~-- 456 (566)
-.-+.++--+++.+.+-|.... +.-|.-.+|-...|.=+|.+-+.++.. -|++.+.-..-+..+..+..
T Consensus 147 s~~IikSTLdFv~g~~iEq~nf--~~~p~A~~fP~ylR~ksGl~E~yA~Fi-------FPk~~FpE~~~~~qi~~AIp~~ 217 (357)
T cd00686 147 SLNLIRSTLDFFEGCWIEQYNF--GGFPGSHDYPQFLRRMNGLGHCVGASL-------WPKEQFNERSLFLEITSAIAQM 217 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--CCCCCCcccchHHHhccCCcceeEEEe-------cchhhCchHhhHHHhhHHHHHH
Confidence 5567788889999999997643 336777777777777777665544322 34443322122233333333
Q ss_pred -hHhhhccCccchhhhhcC-CCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhh
Q 008427 457 -LIARLDDDVRTYKVEQER-GDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARM 534 (566)
Q Consensus 457 -~i~RL~NDI~S~~kE~~r-Gd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~ 534 (566)
..+-++|||.||=||--. ++-.|.|.-|-+.+|+|..+|.+.+.+-.-.+-+++.+ .|.+.. | .++..+-++++.
T Consensus 218 ~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~-VLse~d-p-~l~~av~~Fi~G 294 (357)
T cd00686 218 ENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA-VFSDKD-P-QVMDTIECFMHG 294 (357)
T ss_pred HHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HhcCCC-h-HHHHHHHHHHHH
Confidence 345589999999999854 45678888888889999999999887766666666554 344322 2 344444444443
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=93.58 E-value=4.6 Score=40.95 Aligned_cols=202 Identities=20% Similarity=0.221 Sum_probs=108.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhcccCCHHH----HHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCC
Q 008427 301 SITRKFMTKIIAIASVIDDIYDVYGTLEE----LKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPP 376 (566)
Q Consensus 301 s~~Rl~~aK~~~l~~viDD~fD~ygt~eE----l~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~ 376 (566)
...|..+.-+-.+.-.+||+-|......+ |+-+-+++...-.+..+..+....++..++..+...
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~----------- 85 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRR----------- 85 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHH-----------
Confidence 45666777888889999999997664332 444444444432111123344556777777766332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHH
Q 008427 377 GCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 377 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
..--++.+.+++.|+.+.. ....++|++|+......+.|....+++-.++.... ..++.+. ....+
T Consensus 86 --~~l~~~~l~~li~~~~~dl---~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~--~~~~~~~-------a~~lG 151 (267)
T PF00494_consen 86 --YGLPREPLLELIDGMEMDL---EFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDP--DEAARDA-------ARALG 151 (267)
T ss_dssp --SHHHHHHHHHHHHHHHHCT---T-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTS--HHHHHHH-------HHHHH
T ss_pred --HhhhHHHHHHHHHHhcccc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc--hhhHHHH-------HHHHH
Confidence 1134566777888877443 33558899999999999888877777666654222 1133333 23333
Q ss_pred hHhhhccCccchhhh-hcCCCC--CchhhHHHhhcCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCC-Ch
Q 008427 457 LIARLDDDVRTYKVE-QERGDA--PSSVECYMQQYGVSEEEACNK----------IKEMVEIEWMNINEEIQDPNHP-PL 522 (566)
Q Consensus 457 ~i~RL~NDI~S~~kE-~~rGd~--~n~V~cyMke~gvS~EeA~~~----------i~~~i~~~wk~ln~e~l~~~~~-p~ 522 (566)
..+-+.|=+-..... ..+|-+ +.- .|.++|+|.++-... +..+++.+...+.+..--...+ |.
T Consensus 152 ~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 152 RALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp HHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred HHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 333333333333344 345543 332 367889988765432 4555555555544433222345 44
Q ss_pred hHHHHHHH
Q 008427 523 QWLLPSLN 530 (566)
Q Consensus 523 ~~~~~~lN 530 (566)
.+...+.-
T Consensus 229 ~~~~~~~~ 236 (267)
T PF00494_consen 229 RARPAVAA 236 (267)
T ss_dssp THHHHHHH
T ss_pred hhhHHHHH
Confidence 44444333
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=90.96 E-value=3.6 Score=40.73 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccc-ccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTM-SSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~-S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.+....++.|...+..|... ..||.++|++.... |+++.-..+......+.. +++..+ ...++.+..+
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~lG 159 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA--DDEQAE---ALKDYGRALG 159 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc--CHHHHH---HHHHHHHHHH
Confidence 3566778889999999999988654 57999999999998 666544433322222222 333333 3467788889
Q ss_pred hHhhhccCccchhhhh----------cCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 457 LIARLDDDVRTYKVEQ----------ERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 457 ~i~RL~NDI~S~~kE~----------~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
+..-+.||+..+.... ++|.. +...+++ .+.+.+.++.+++.+..
T Consensus 160 ~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 160 LAFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 9999999998876654 45554 5555555 55566666666666544
No 14
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=86.91 E-value=38 Score=34.38 Aligned_cols=196 Identities=18% Similarity=0.222 Sum_probs=100.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhcccCCH-H----HHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCC
Q 008427 301 SITRKFMTKIIAIASVIDDIYDVYGTL-E----ELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEP 375 (566)
Q Consensus 301 s~~Rl~~aK~~~l~~viDD~fD~ygt~-e----El~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~ 375 (566)
...|..+.-+-.+.-.+||+-|..... . .|+-+.+++..-.. +.-|. .++..++..+..+. +
T Consensus 23 ~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~---~~~~~--~pv~~al~~~~~~~--------~ 89 (265)
T cd00683 23 PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYW---GGAPT--HPVLRALADLARRY--------G 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHc---CCCCC--ChHHHHHHHHHHHc--------C
Confidence 345666667777888899999975532 2 22233333332111 01122 26667777765421 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHH
Q 008427 376 PGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYS 455 (566)
Q Consensus 376 ~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~ 455 (566)
. -++.+.+++.++-.... ....||++|.......+.|+-..+++-.++.+ . +++.... ....
T Consensus 90 l-----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~-~--~~~~~~~-------A~~l 151 (265)
T cd00683 90 I-----PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS-S--DEAALER-------ARAL 151 (265)
T ss_pred C-----CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC-C--ChHHHHH-------HHHH
Confidence 1 13556777777775544 45678998888877777776655554444321 1 2222222 2222
Q ss_pred Hh---HhhhccCccchhhhhcCCCC--CchhhHHHhhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008427 456 SL---IARLDDDVRTYKVEQERGDA--PSSVECYMQQYGVSEEEA---------CNKIKEMVEIEWMNINEEIQDPNHPP 521 (566)
Q Consensus 456 ~~---i~RL~NDI~S~~kE~~rGd~--~n~V~cyMke~gvS~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p 521 (566)
+. ++.++-|+. ...++|-+ +.-+ |.++|+|.++- ..-+..+++.+.+-+....-....+|
T Consensus 152 G~AlqltnilRdv~---eD~~~gR~YlP~d~---l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp 225 (265)
T cd00683 152 GLALQLTNILRDVG---EDARRGRIYLPREE---LARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALP 225 (265)
T ss_pred HHHHHHHHHHHHHH---HHHccCCCcCCHHH---HHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 32 233334444 23345532 3222 67788887652 24455566666555544332234577
Q ss_pred hhHHHHHHHHhh
Q 008427 522 LQWLLPSLNLAR 533 (566)
Q Consensus 522 ~~~~~~~lN~aR 533 (566)
....-.++-++.
T Consensus 226 ~~~~~~~~~~~~ 237 (265)
T cd00683 226 RRSRFCVRAAAM 237 (265)
T ss_pred HhhHHHHHHHHH
Confidence 555444444443
No 15
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=86.24 E-value=13 Score=37.60 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
....+.+.....+.+-..+..|... ..||.++|++....-+|.....+....++--. .+++..+- ..++-+..++
T Consensus 109 ~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~~~---l~~~g~~lG~ 183 (259)
T cd00685 109 ALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEAEA---LKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 4666777888889998889888654 57999999999888777765544322222111 23444332 4678888888
Q ss_pred HhhhccCccchhhhh-----------cCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 458 IARLDDDVRTYKVEQ-----------ERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 458 i~RL~NDI~S~~kE~-----------~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..-+.||+..+.... ..|.. |.+.+|.- .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 999999987765432 12222 45444443 55666667777766554
No 16
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=84.05 E-value=52 Score=33.47 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhh--hhh-ccCChhHHHHHHHHHHHHHHHHhchhccCCCcc
Q 008427 302 ITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEV--AAA-NELPKYMQVCYFALLDVVKEMEDKPVNKEPPGC 378 (566)
Q Consensus 302 ~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~--~~~-~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 378 (566)
..|-.++-+-.+.-.+||+-|..+++++-+ ..+..|.. ..+ ..-| -.++..++..++... +.
T Consensus 18 ~~R~~~~alYaf~r~~d~i~D~~~~~~~~~---~~L~~w~~~l~~~~~g~~--~~pv~~al~~~~~~~--------~l-- 82 (266)
T TIGR03465 18 ERRRAMTALYAFCREVDDIVDEDSDPEVAQ---AKLAWWRAEIDRLYAGAP--SHPVARALADPARRF--------DL-- 82 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHH---HHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHc--------CC--
Confidence 456666677788888999999855443322 22344422 111 1112 235666666665432 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhH
Q 008427 379 MHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLI 458 (566)
Q Consensus 379 ~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i 458 (566)
-++.+.+++.++-+... ...++|++|+......+.|.-..+++-.+ |.. ++.........-..+. +
T Consensus 83 ---~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~vg~l~~~ll--g~~--~~~~~~~a~~lG~Alq----l 148 (266)
T TIGR03465 83 ---PQEDFLEVIDGMEMDLE---QTRYPDFAELDLYCDRVAGAVGRLSARIF--GAT--DARTLEYAHHLGRALQ----L 148 (266)
T ss_pred ---CHHHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCC--ChhHHHHHHHHHHHHH----H
Confidence 13456777777764433 34578999988888777776666555444 332 2222222111111122 2
Q ss_pred hhhccCccchhhhhcCCCCCchhhHHHhhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q 008427 459 ARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEE---------EACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSL 529 (566)
Q Consensus 459 ~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~E---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~l 529 (566)
+-++-|+. ...++|-+ -.=.=.|.++|+|.+ ...+-+..+++.+..-+.+..--...+|......++
T Consensus 149 tnilRdv~---eD~~~gR~-ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~~ 224 (266)
T TIGR03465 149 TNILRDVG---EDARRGRI-YLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAAR 224 (266)
T ss_pred HHHHHHhH---HHHhCCCe-ecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHHH
Confidence 33333443 33445653 110113577888876 334555666666665555433222457754444443
Q ss_pred HH
Q 008427 530 NL 531 (566)
Q Consensus 530 N~ 531 (566)
-.
T Consensus 225 ~~ 226 (266)
T TIGR03465 225 AM 226 (266)
T ss_pred HH
Confidence 33
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=82.64 E-value=60 Score=33.10 Aligned_cols=120 Identities=21% Similarity=0.185 Sum_probs=66.8
Q ss_pred hHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhccc-CCHHHHHHHHHHHHHhhh--hhh-ccCChhHHHHHHHHHHH
Q 008427 287 CYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVY-GTLEELKLFTHAIERWEV--AAA-NELPKYMQVCYFALLDV 362 (566)
Q Consensus 287 ~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~y-gt~eEl~~ft~ai~rWd~--~~~-~~lPe~mk~~~~al~~~ 362 (566)
+|+|+.-.. | ...|..+.-+-.|.=.+||+-|.. ++.++-. ..++.|.. ..+ ..-| -.++..++..+
T Consensus 7 sf~~a~~~l--p--~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~---~~L~~wr~~l~~~~~g~~--~~pv~~aL~~~ 77 (266)
T TIGR03464 7 NFPVASLLL--P--ARLRAPIHAVYAFARTADDIADEGDGSAEERL---ALLDDFRAELDAIYSGEP--AAPVFVALART 77 (266)
T ss_pred cHHHHHHhC--C--HHHHHHHHHHHHHHHHHHHhccCCCCChHHHH---HHHHHHHHHHHHHhCCCC--CChHHHHHHHH
Confidence 455444333 3 345555566777778899999975 4444321 22334421 111 1112 13567777777
Q ss_pred HHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh
Q 008427 363 VKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG 431 (566)
Q Consensus 363 ~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~ 431 (566)
+.+. +. . ++.+.+++.++... ......+|++|.......+.|+-..+++-.++
T Consensus 78 ~~~~--------~l-~----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g 130 (266)
T TIGR03464 78 VQRH--------GL-P----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYG 130 (266)
T ss_pred HHHc--------CC-C----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 6542 11 1 23455666666433 23445789998888888888776666655444
No 18
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=78.58 E-value=51 Score=34.81 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
....+.++...++.+-+.+..|... .-+|.++|+..-..=+|..+..++..-++--. .+++..+. ..++-+..++
T Consensus 134 ~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag-~~~~~~~~---l~~~G~~lG~ 208 (322)
T TIGR02749 134 VVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSD-VPSQVAND---LYEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHHH
Confidence 4666778888889998888777543 34799999997666556554333221111122 45555544 3777888999
Q ss_pred HhhhccCccchh
Q 008427 458 IARLDDDVRTYK 469 (566)
Q Consensus 458 i~RL~NDI~S~~ 469 (566)
..-+.||+..+.
T Consensus 209 aFQi~DDild~~ 220 (322)
T TIGR02749 209 AFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHhccCC
Confidence 999999998775
No 19
>PLN02890 geranyl diphosphate synthase
Probab=73.72 E-value=58 Score=35.83 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=62.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHH
Q 008427 377 GCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 377 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
.....+.++...++.+-+.+..|..+ ..+|+++|+.....-+|.....++..-++=-. .+++..+.+ ..+-+..+
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~~-~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag-a~~~~~~~l---~~fG~~lG 301 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSRE-QRRSMDYYMQKTYYKTASLISNSCKAVAILAG-QTAEVAVLA---FEYGRNLG 301 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHH
Confidence 35677888899999999999988753 45899999987666555554433222111112 356665543 67788889
Q ss_pred hHhhhccCccchhhh
Q 008427 457 LIARLDDDVRTYKVE 471 (566)
Q Consensus 457 ~i~RL~NDI~S~~kE 471 (566)
+..-+.||+..+.-.
T Consensus 302 lAFQI~DDiLD~~g~ 316 (422)
T PLN02890 302 LAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHhhcCC
Confidence 999999999887543
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=71.47 E-value=43 Score=36.80 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
....+.++..+++.+-+.+..+.. +.-+|.++|+.....=+|..+..++..-++=-. .+++..+. ..++-+..++
T Consensus 228 ~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallag-a~~~~~~~---l~~fG~~LGi 302 (416)
T PLN02857 228 VIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSG-VDSSVKEQ---MYEYGKNLGL 302 (416)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 466677778888888887877764 345799999998776666554433221111112 35555544 4777888899
Q ss_pred HhhhccCccchhh
Q 008427 458 IARLDDDVRTYKV 470 (566)
Q Consensus 458 i~RL~NDI~S~~k 470 (566)
..-+.||+..+..
T Consensus 303 AFQI~DDiLD~~~ 315 (416)
T PLN02857 303 AFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999988763
No 21
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=69.98 E-value=80 Score=33.32 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
....+.+....++.+-+.+..+.... +|.++|+.+-..=+|.....+...-++--. .+++..+.+ ...-+..++
T Consensus 135 ~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~-~~~~~~~~l---~~~g~~lGl 208 (322)
T COG0142 135 AIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG-ADEELLEAL---EDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHhhH
Confidence 46677888899999999888887655 999999998887777665544333222122 345555553 778888999
Q ss_pred HhhhccCccchhhhh-cCCCC---------CchhhHHHhhcCCC
Q 008427 458 IARLDDDVRTYKVEQ-ERGDA---------PSSVECYMQQYGVS 491 (566)
Q Consensus 458 i~RL~NDI~S~~kE~-~rGd~---------~n~V~cyMke~gvS 491 (566)
..-+.|||..+.-+. .-|.. .+...++.-+.+..
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 999999998887642 22332 46776776665433
No 22
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=65.49 E-value=1.4e+02 Score=31.50 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.++...++.+-..+..|.. +.-+|.++|++.-..-+|..+..++..-+ ++. .+++..+. ..++-+..+
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag--~~~~~~~~---l~~~g~~lG 203 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAASCQLGAIASG--ANEAIVKK---LYWFGYYVG 203 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 456678888889999888888753 34579999998877766655443322111 121 24444443 366778888
Q ss_pred hHhhhccCccchhh
Q 008427 457 LIARLDDDVRTYKV 470 (566)
Q Consensus 457 ~i~RL~NDI~S~~k 470 (566)
+..-+.||+..+..
T Consensus 204 ~aFQI~DDilD~~~ 217 (319)
T TIGR02748 204 MSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHccC
Confidence 99999999987653
No 23
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=57.68 E-value=2.5e+02 Score=29.58 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
....+.++...++.+-..+..|... .-+|.++|+.....-+|.....++..-++=-. .+++..+. ...+-+..++
T Consensus 131 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~ 205 (323)
T PRK10888 131 VLEVMSEAVNVIAEGEVLQLMNVND-PDITEENYMRVIYSKTARLFEAAAQCSGILAG-CTPEQEKG---LQDYGRYLGT 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 4566778888889988888887543 35899999998877666664433221111112 34444433 4677888888
Q ss_pred HhhhccCccchhh
Q 008427 458 IARLDDDVRTYKV 470 (566)
Q Consensus 458 i~RL~NDI~S~~k 470 (566)
..-+.||+..+..
T Consensus 206 aFQi~DD~ld~~~ 218 (323)
T PRK10888 206 AFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHhhcccC
Confidence 9999999988754
No 24
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=56.81 E-value=9.2 Score=36.17 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=26.6
Q ss_pred hcCCCCCchhhHHHhhc-CCCHHHHHHHHHH
Q 008427 472 QERGDAPSSVECYMQQY-GVSEEEACNKIKE 501 (566)
Q Consensus 472 ~~rGd~~n~V~cyMke~-gvS~EeA~~~i~~ 501 (566)
..||-.+..|.||+-++ |.|.++|.+++++
T Consensus 118 AGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~ 148 (183)
T KOG1719|consen 118 AGRTRSATVVACYLMQHKNWTPEAAVEHVRK 148 (183)
T ss_pred CCCccchhhhhhhhhhhcCCCHHHHHHHHHh
Confidence 46778899999998876 9999999999987
No 25
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=54.57 E-value=2.9e+02 Score=29.39 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=61.5
Q ss_pred HHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHH
Q 008427 427 EALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIE 506 (566)
Q Consensus 427 ~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~ 506 (566)
+.-++.... +|++..+.+. ..-.=.++-+-.|++=....+.+.+.|+. |.|..|- +.+++.+.+.-.++++
T Consensus 197 L~a~A~~p~-~t~~~a~~i~--~aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY~-----~~~~~~~Rl~~f~~~A 267 (330)
T PF10776_consen 197 LFAYAADPD-LTPEDAEKIK--DAYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYYP-----DEEEMEERLKYFVEKA 267 (330)
T ss_pred HHHHHcCCC-CCHHHHHHHH--HcccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeCC-----CHHHHHHHHHHHHHHH
Confidence 333455666 7887766542 12222344455566666666666666776 9997665 7889999999999998
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCC
Q 008427 507 WMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDG 544 (566)
Q Consensus 507 wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg 544 (566)
-+...+ +|.+--.+.++-+ +--||-.++.
T Consensus 268 ~~~~~~-------Lp~~~fHr~iv~G--Lla~YLSD~K 296 (330)
T PF10776_consen 268 LEQASR-------LPYPKFHRMIVRG--LLAMYLSDPK 296 (330)
T ss_pred HHHHHh-------CCCchHHHHHHHH--HHHHHhCCHh
Confidence 877655 5544444444433 3336765443
No 26
>CHL00151 preA prenyl transferase; Reviewed
Probab=51.49 E-value=1.6e+02 Score=30.97 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.++...++.+-+.+..|.. ..-+|.++|+..-..=+|.....++..-++ +. .+++..+. ..++-+..+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 456677888888888877776643 334799999997555555444333222111 22 34554443 367788889
Q ss_pred hHhhhccCccchhh
Q 008427 457 LIARLDDDVRTYKV 470 (566)
Q Consensus 457 ~i~RL~NDI~S~~k 470 (566)
+..-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988754
No 27
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=50.87 E-value=16 Score=28.22 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCchhhHHHhhcCCCHHHHHHHHHHHHH
Q 008427 477 APSSVECYMQQYGVSEEEACNKIKEMVE 504 (566)
Q Consensus 477 ~~n~V~cyMke~gvS~EeA~~~i~~~i~ 504 (566)
+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3457788999999999999999988554
No 28
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=49.83 E-value=14 Score=36.12 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=32.3
Q ss_pred HhhhccCccchhhhhcCC-CCCchhhHHHhhcCCCHHHHHHHHHHHHH
Q 008427 458 IARLDDDVRTYKVEQERG-DAPSSVECYMQQYGVSEEEACNKIKEMVE 504 (566)
Q Consensus 458 i~RL~NDI~S~~kE~~rG-d~~n~V~cyMke~gvS~EeA~~~i~~~i~ 504 (566)
.-.|--++..+|+..+.- .+.-+=.+.|+++|+|++||+++++++-=
T Consensus 127 ~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 127 RRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344555666666654332 23444557999999999999999998654
No 29
>PLN02632 phytoene synthase
Probab=46.87 E-value=3.8e+02 Score=28.41 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhh--h-hhccCChhHHHHHHHHHHHHHHHHhchhccCCCcc
Q 008427 302 ITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEV--A-AANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGC 378 (566)
Q Consensus 302 ~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~--~-~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 378 (566)
..|..+.-+-.|.-.+||+-|.......-. ..+..|.. . ....-|. .++..++.++..+.. . .
T Consensus 73 ~~R~ai~alYAf~R~~DdI~D~~~~~~~~~---~~L~~w~~~l~~~~~g~~~--~pv~~aL~~~~~~~~--------L-~ 138 (334)
T PLN02632 73 ERRKAIWAIYVWCRRTDELVDGPNASHITP---AALDRWEARLEDLFDGRPY--DMLDAALADTVSKFP--------L-D 138 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHhcCCCCChhhH---HHHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHCC--------C-C
Confidence 345555667777888999999654322111 12444422 1 1111122 256677777765431 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCC-CCc-HHHHHhccchhHHHHHHH
Q 008427 379 MHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDM-AIT-KQALDWAISVPKIIRYSS 456 (566)
Q Consensus 379 ~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~-~l~-~ev~e~~~~~~~l~~~~~ 456 (566)
++.+.+++.++..... ....+|++|+......+.|+--.+++..++.... ..+ +++.. .....+
T Consensus 139 ----~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~-------~A~~lG 204 (334)
T PLN02632 139 ----IQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYN-------AALALG 204 (334)
T ss_pred ----hHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHH-------HHHHHH
Confidence 3445677777764433 3457898888888877777666655554443221 011 11222 222223
Q ss_pred h---HhhhccCccchhhhhcCCCC--CchhhHHHhhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCh
Q 008427 457 L---IARLDDDVRTYKVEQERGDA--PSSVECYMQQYGVSEEEA---------CNKIKEMVEIEWMNINEEIQDPNHPPL 522 (566)
Q Consensus 457 ~---i~RL~NDI~S~~kE~~rGd~--~n~V~cyMke~gvS~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~ 522 (566)
. ++-++.|+. ...++|-+ +- =.|.++|+|.++- ..-+..+++.+..-+.+..---..+|.
T Consensus 205 ~AlQltNILRDv~---eD~~~GRvYLP~---e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~ 278 (334)
T PLN02632 205 IANQLTNILRDVG---EDARRGRVYLPQ---DELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDP 278 (334)
T ss_pred HHHHHHHHHHHHH---HHHhCCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCH
Confidence 3 333334553 33456643 21 1267889998772 334455555555444432211234676
Q ss_pred hHH
Q 008427 523 QWL 525 (566)
Q Consensus 523 ~~~ 525 (566)
.+.
T Consensus 279 ~~r 281 (334)
T PLN02632 279 ASR 281 (334)
T ss_pred HhH
Confidence 544
No 30
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=37.55 E-value=40 Score=31.95 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=25.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 008427 484 YMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQ 523 (566)
Q Consensus 484 yMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 523 (566)
-|++.|.|..+ |+..|++.||+ .+.+||+-|+|
T Consensus 126 ~~~~~Gks~~e----IR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSPKE----IRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCHHH----HHHHHHHHHHh---CCCCCCCCCCC
Confidence 45667777655 89999999985 68888877765
No 31
>PRK10581 geranyltranstransferase; Provisional
Probab=33.13 E-value=5e+02 Score=27.08 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHH--HHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccC
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEA--LVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDD 464 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 464 (566)
..++.+-..+..|.. ..+|.++|++.-..=+|.....+.. -+..|.. +++..+. ..++-+..++..-+.||
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~--~~~~~~~---l~~~g~~lG~aFQI~DD 224 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAVRLGALSAGDK--GRRALPV---LDRYAESIGLAFQVQDD 224 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCC--cHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 356777777777753 4689999998766544444333221 1112321 2334443 36788888999999999
Q ss_pred ccchhhh-hcCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 465 VRTYKVE-QERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 465 I~S~~kE-~~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
+..+... ..-|. . .|.+.++ ..+.|.+.+++.++.+.+.+..
T Consensus 225 ilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 225 ILDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred HccccCChHHHCCCcchhhhcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9887432 11222 1 2454443 2478888888888888877655
No 32
>smart00400 ZnF_CHCC zinc finger.
Probab=30.87 E-value=56 Score=24.91 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCCchhhHHHhhcCCCHHHHHHHH
Q 008427 475 GDAPSSVECYMQQYGVSEEEACNKI 499 (566)
Q Consensus 475 Gd~~n~V~cyMke~gvS~EeA~~~i 499 (566)
|...+.|..+|+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4556889999999999999999875
No 33
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=30.65 E-value=5.4e+02 Score=25.91 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHh-hCCCCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 388 GLVRAYFVEAKWF-NAKYVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 388 ~~~~a~l~EA~W~-~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
..+++..-|..-. ..+..+|.++|+++-..-+|......+..-++ +. .+++..+. ..++.+..++..-+.||+
T Consensus 114 ~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~afQi~DD~ 188 (260)
T PF00348_consen 114 ALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAG--ADEEQIEA---LREFGRHLGIAFQIRDDL 188 (260)
T ss_dssp HHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SGHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhcc--chhHHHHH---HHHHHHHHHHHHhhhhhh
Confidence 3444444443222 23347899999999988887775544332222 22 35555544 478889999999999999
Q ss_pred cchhhh
Q 008427 466 RTYKVE 471 (566)
Q Consensus 466 ~S~~kE 471 (566)
..+...
T Consensus 189 ~d~~~~ 194 (260)
T PF00348_consen 189 LDLFGD 194 (260)
T ss_dssp HHHHSH
T ss_pred hhccCc
Confidence 887753
No 34
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=26.42 E-value=1.9e+02 Score=25.97 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCC--CCch--HHHHHHHHHHhhcCceeehhhhcccccccc
Q 008427 76 VTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDH--NNDL--YTVALRFRLLRQHGYKVSADIFKKFKDEKG 151 (566)
Q Consensus 76 l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~--~~dl--~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g 151 (566)
-.+|+.|++|||++.- -..|-++-+. ++ ....+- ...| -.+|++-|.||.+| +|.--.-+| + .+|
T Consensus 14 ~~~ie~L~~lgi~R~v----A~tlv~L~~~---~E-~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-k-GKG 82 (124)
T COG4738 14 YEIIELLRILGIPRNV----ATTLVCLAKG---DE-ASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-K-GKG 82 (124)
T ss_pred HHHHHHHHHcCCCchH----HHHHHHHhcC---cc-hhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-c-CCC
Confidence 4689999999999863 3334333221 11 000000 1122 36899999999999 666555555 4 335
Q ss_pred cc-cc-ccccchHHHHhHhh
Q 008427 152 EF-KA-MLTNDARGLLCLYE 169 (566)
Q Consensus 152 ~F-~~-~l~~dv~glL~LYe 169 (566)
.= +. .|+.+...+++-++
T Consensus 83 RPik~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 83 RPIKLYRLTVPFDEIVSEIE 102 (124)
T ss_pred CCceEEEecCcHHHHHHHHH
Confidence 32 21 34566666666554
No 35
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=26.26 E-value=52 Score=22.10 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=14.3
Q ss_pred HHHhhcCCCHHHHHHHHH
Q 008427 483 CYMQQYGVSEEEACNKIK 500 (566)
Q Consensus 483 cyMke~gvS~EeA~~~i~ 500 (566)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 589999999999665553
No 36
>smart00463 SMR Small MutS-related domain.
Probab=25.28 E-value=79 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008427 488 YGVSEEEACNKIKEMVEIEWMNI 510 (566)
Q Consensus 488 ~gvS~EeA~~~i~~~i~~~wk~l 510 (566)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999998764
No 37
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=23.19 E-value=88 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHh
Q 008427 488 YGVSEEEACNKIKEMVEIEWMNINEE 513 (566)
Q Consensus 488 ~gvS~EeA~~~i~~~i~~~wk~ln~e 513 (566)
||++.++|+..+...+..+++.-...
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~ 29 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRE 29 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCE
Confidence 79999999999999999998764433
No 38
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=22.87 E-value=1.1e+02 Score=31.55 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=49.9
Q ss_pred cchhhhhcCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCChhHHHHHHHHhh
Q 008427 466 RTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNI----------NEEIQDPNHPPLQWLLPSLNLAR 533 (566)
Q Consensus 466 ~S~~kE~~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~l----------n~e~l~~~~~p~~~~~~~lN~aR 533 (566)
..|++||. .++.++..+...|.+.++|.++++--+++.+-.+ +.+.|...++|...+..+.++||
T Consensus 95 ~~wk~~qk---a~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~ 169 (269)
T COG1093 95 QEWKKEQK---ADKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIAR 169 (269)
T ss_pred HHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHH
Confidence 34566663 4688888898999999999999998888775433 23344455789899999999998
No 39
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=22.48 E-value=83 Score=28.55 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=18.7
Q ss_pred hhhHHHhhcCCCHHHHHHHHHH
Q 008427 480 SVECYMQQYGVSEEEACNKIKE 501 (566)
Q Consensus 480 ~V~cyMke~gvS~EeA~~~i~~ 501 (566)
=|.+.|.|.|+|.++|++.+.+
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 4788999999999999987753
No 40
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=21.15 E-value=5.2e+02 Score=24.42 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=10.3
Q ss_pred HhhCCCCCCHHHH
Q 008427 399 WFNAKYVPTFEEY 411 (566)
Q Consensus 399 W~~~g~vPtleEY 411 (566)
|...|..||++|.
T Consensus 112 ~srAg~~~~Lqe~ 124 (152)
T TIGR03486 112 WARAGRIPSLQEH 124 (152)
T ss_pred HHHccCCcchHHH
Confidence 5677888888877
No 41
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.47 E-value=71 Score=23.84 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=15.3
Q ss_pred HHHHhhcCceeehhhhcccc
Q 008427 128 FRLLRQHGYKVSADIFKKFK 147 (566)
Q Consensus 128 FRlLR~~Gy~vS~dvf~~F~ 147 (566)
+.-|+++||++|+++++.+.
T Consensus 25 l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 25 LDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCcccCHHHHHHHH
Confidence 44458889999999887764
No 42
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=1.4e+02 Score=30.55 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=39.8
Q ss_pred ccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHc
Q 008427 148 DEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSL 211 (566)
Q Consensus 148 d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~l~~~V~~aL 211 (566)
+.+|-|.....-|+||-..|-++-- ....| -|=.|+.||++||.. .+-++++++-|
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~e-~LLnaLRfTTKHlNd------esTpK~ir~ll 319 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQSE-CLLNALRFTTKHLND------ESTPKSIRHLL 319 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhhH-HHHHHHHHHHhhcCC------CCChHHHHHHh
Confidence 5778888888889999999988743 33333 566799999999963 23345555544
No 43
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=20.23 E-value=89 Score=31.16 Aligned_cols=103 Identities=11% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhc
Q 008427 383 KEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLD 462 (566)
Q Consensus 383 k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~ 462 (566)
.+....|++....-...+-++..+.-+.|+.+|...--. ++.=|.. |.... ..++++.+..+.. -
T Consensus 83 ~~~~~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l-------~f~Dg~t--P~~~~-----v~~fv~i~e~~~~-~ 147 (225)
T KOG1720|consen 83 PQPYIQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDL-------FFADGST--PTDAI-----VKEFVKIVENAEK-G 147 (225)
T ss_pred ChhHHHHhhhcccceEEEcCCCCCChHHhcccCceeeee-------ecCCCCC--CCHHH-----HHHHHHHHHHHHh-c
Confidence 344455555444455566677777778887776554321 1111222 22111 1233333332221 1
Q ss_pred cCccchhhhhcCCCCCchhhHHH-hhcCCCHHHHHHHHHH
Q 008427 463 DDVRTYKVEQERGDAPSSVECYM-QQYGVSEEEACNKIKE 501 (566)
Q Consensus 463 NDI~S~~kE~~rGd~~n~V~cyM-ke~gvS~EeA~~~i~~ 501 (566)
-=|+=+-+ ..-|-....|.||| +++|+|..||++.++.
T Consensus 148 g~iaVHCk-aGlGRTG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 148 GKIAVHCK-AGLGRTGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred CeEEEEec-cCCCchhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 11222222 23456678899986 5789999999998865
Done!