Query 008427
Match_columns 566
No_of_seqs 234 out of 901
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 2E-168 6E-173 1378.5 54.1 543 8-566 11-554 (554)
2 3m00_A Aristolochene synthase; 100.0 4E-167 1E-171 1366.6 50.8 535 15-566 13-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 7E-166 2E-170 1359.7 49.0 538 17-565 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 2E-161 7E-166 1331.0 51.9 540 18-565 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 6E-161 2E-165 1326.6 47.0 539 17-565 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 6E-160 2E-164 1322.7 44.5 535 15-565 31-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 4E-144 1E-148 1232.8 45.9 492 71-566 297-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 1E-143 5E-148 1220.9 48.2 489 71-566 245-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 2E-143 5E-148 1223.5 47.2 489 71-565 269-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 1E-108 4E-113 926.5 36.8 455 48-565 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 2.3E-51 7.8E-56 428.5 19.1 252 253-514 14-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2.5E-49 8.4E-54 406.2 22.0 242 256-514 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.6E-48 1.9E-52 400.1 20.5 248 250-514 21-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 6.2E-46 2.1E-50 395.0 23.4 243 264-514 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 4.5E-33 1.5E-37 299.5 20.1 245 260-514 130-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 8.1E-18 2.8E-22 177.6 17.1 246 263-533 34-293 (374)
17 3sdr_A Alpha-bisabolene syntha 97.1 0.00015 5.1E-09 83.4 2.3 46 17-63 23-68 (817)
18 3acx_A Dehydrosqualene synthas 90.4 15 0.00053 36.5 19.1 191 302-526 38-245 (293)
19 3lmd_A Geranylgeranyl pyrophos 85.7 5.4 0.00018 41.4 11.7 86 378-470 161-247 (360)
20 3ipi_A Geranyltranstransferase 85.3 3.7 0.00013 41.3 10.0 143 378-535 128-279 (295)
21 4hd1_A Squalene synthase HPNC; 82.6 41 0.0014 33.4 18.8 188 303-526 40-240 (294)
22 1rtr_A Geranyltranstransferase 74.4 13 0.00045 37.4 9.8 114 387-512 148-271 (301)
23 3oyr_A Trans-isoprenyl diphosp 74.3 28 0.00095 35.7 12.4 88 378-470 152-239 (345)
24 2ftz_A Geranyltranstransferase 73.0 32 0.0011 34.2 12.2 120 378-512 135-264 (284)
25 3mzv_A Decaprenyl diphosphate 72.7 44 0.0015 34.1 13.4 88 377-470 139-227 (341)
26 3rmg_A Octaprenyl-diphosphate 71.1 41 0.0014 34.2 12.7 88 377-470 133-221 (334)
27 3ts7_A Geranyltranstransferase 69.9 35 0.0012 34.6 11.9 111 387-511 158-281 (324)
28 1wy0_A Geranylgeranyl pyrophos 69.1 32 0.0011 35.0 11.5 87 378-470 138-225 (342)
29 3lsn_A Geranyltranstransferase 69.0 32 0.0011 34.6 11.2 111 389-511 154-275 (304)
30 3p8l_A Geranyltranstransferase 68.8 25 0.00084 35.4 10.3 112 387-512 156-279 (302)
31 3m0g_A Farnesyl diphosphate sy 68.3 15 0.00052 36.9 8.6 111 387-512 147-269 (297)
32 3nf2_A Putative polyprenyl syn 66.6 95 0.0032 31.7 14.4 87 378-469 144-230 (352)
33 2h8o_A Geranyltranstransferase 64.5 27 0.00093 35.6 9.7 113 387-512 192-315 (335)
34 3p8r_A Geranyltranstransferase 62.3 25 0.00085 35.3 8.9 113 387-512 158-282 (302)
35 3pko_A Geranylgeranyl pyrophos 62.0 75 0.0025 32.2 12.5 103 378-487 144-258 (334)
36 4dhd_A Polyprenyl synthetase; 60.2 39 0.0013 34.7 10.1 89 378-470 133-232 (358)
37 4f62_A Geranyltranstransferase 58.8 41 0.0014 34.0 9.8 111 388-512 152-275 (317)
38 3apz_A Geranyl diphosphate syn 55.4 55 0.0019 33.3 10.2 87 378-470 154-241 (348)
39 3uca_A Geranyltranstransferase 54.3 53 0.0018 33.3 9.7 114 387-512 180-304 (324)
40 3pde_A Farnesyl-diphosphate sy 52.2 61 0.0021 32.6 9.8 111 388-512 156-278 (309)
41 3llw_A Geranyltranstransferase 51.3 35 0.0012 34.4 7.8 114 387-512 159-281 (311)
42 1rqj_A Geranyltranstransferase 51.3 62 0.0021 32.2 9.6 114 387-512 152-276 (299)
43 1pd3_A Nonstructural protein N 50.4 13 0.00045 27.3 3.2 33 49-85 16-48 (58)
44 3npk_A Geranyltranstransferase 50.1 1.1E+02 0.0039 30.3 11.3 113 386-512 144-266 (291)
45 3lom_A Geranyltranstransferase 50.0 1E+02 0.0036 30.9 11.1 114 387-511 158-282 (313)
46 2j1p_A Geranylgeranyl pyrophos 48.0 22 0.00076 35.5 5.7 110 388-512 161-272 (293)
47 3lk5_A Geranylgeranyl pyrophos 44.3 2.5E+02 0.0087 28.8 13.3 78 385-469 183-263 (380)
48 1wmw_A Geranylgeranyl diphosph 43.2 86 0.0029 31.6 9.3 84 378-469 131-218 (330)
49 2qis_A Farnesyl pyrophosphate 36.7 2.3E+02 0.0078 29.1 11.4 88 378-470 177-271 (374)
50 1uby_A FPS, farnesyl diphospha 34.0 2.1E+02 0.0071 29.3 10.6 88 378-470 170-264 (367)
51 2e8v_A Geranylgeranyl pyrophos 32.0 77 0.0026 32.2 6.8 87 378-470 132-221 (340)
52 3aqb_B Component B of hexapren 31.2 1E+02 0.0035 30.9 7.6 88 378-470 131-218 (325)
53 2her_A Fragment, farnesyl pyro 29.9 1.8E+02 0.0061 29.9 9.2 86 378-469 169-260 (368)
54 3kra_B Geranyl diphosphate syn 29.8 52 0.0018 32.5 4.9 70 389-465 151-221 (274)
55 3s9v_A Abietadiene synthase, c 29.1 20 0.00067 41.0 1.9 41 23-63 5-45 (785)
56 3tc1_A Octaprenyl pyrophosphat 29.0 4.4E+02 0.015 26.2 13.3 83 378-469 123-206 (315)
57 2q80_A Geranylgeranyl pyrophos 28.5 1.4E+02 0.0046 29.8 7.8 84 378-470 112-196 (301)
58 1v4e_A Octoprenyl-diphosphate 28.2 1.4E+02 0.0048 29.7 7.9 83 378-471 128-212 (299)
59 1yhl_A Farnesyl pyrophosphate 25.2 2E+02 0.007 29.2 8.7 88 378-470 152-257 (362)
60 2azj_A Geranylgeranyl pyrophos 24.7 3.1E+02 0.011 27.0 9.6 133 378-533 136-274 (289)
61 3fau_A NEDD4-binding protein 2 20.4 78 0.0027 24.9 3.4 23 488-510 6-28 (82)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.7e-168 Score=1378.51 Aligned_cols=543 Identities=49% Similarity=0.873 Sum_probs=499.7
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhc-cccCccchhhHHHHHHHHHHhC
Q 008427 8 SSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS-NNTAWKTIEEIVTLVDQLQRLG 86 (566)
Q Consensus 8 ~~~~~~~~~~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~~~~~l~lID~lqrLG 86 (566)
++..+++.++.||+||||||+|||+||++ +. ++..+.+.+|+++||++||+||.. .+ |++++|+|||+|||||
T Consensus 11 ~~~~~~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLG 84 (554)
T 3g4d_A 11 SSPLSSNKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLG 84 (554)
T ss_dssp --------------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcC
Confidence 44445566678999999999999999997 43 344678899999999999999975 46 8999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHh
Q 008427 87 VAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLC 166 (566)
Q Consensus 87 i~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~ 166 (566)
|+|||++||+++|++||++ + ... ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||
T Consensus 85 i~~hF~~EI~~~L~~i~~~---~--~~~---~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~ 156 (554)
T 3g4d_A 85 VSYHFTKEIEDELENIYHN---N--NDA---ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLE 156 (554)
T ss_dssp CGGGCHHHHHHHHHHHHHS---C--CCT---TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhc---c--CCC---CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHH
Confidence 9999999999999999985 1 111 4799999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCchHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHH
Q 008427 167 LYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELA 246 (566)
Q Consensus 167 LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelA 246 (566)
|||||||++|||+|||||++||++||++.+.+++++|+++|+|||++|||+++||||||+||++|+++ +++|++|||||
T Consensus 157 LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelA 235 (554)
T 3g4d_A 157 LYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFA 235 (554)
T ss_dssp HHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHH
Confidence 99999999999999999999999999999888888999999999999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCC
Q 008427 247 KLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGT 326 (566)
Q Consensus 247 kldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt 326 (566)
|||||+||++||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||
T Consensus 236 kldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 315 (554)
T 3g4d_A 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 008427 327 LEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVP 406 (566)
Q Consensus 327 ~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vP 406 (566)
+|||++||+||+|||++++++||+|||+||.+++++++|+++++.++||+++++|++++|+++++||++||+|+++||+|
T Consensus 316 leEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvP 395 (554)
T 3g4d_A 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKP 395 (554)
T ss_dssp HHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHh
Q 008427 407 TFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQ 486 (566)
Q Consensus 407 tleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMk 486 (566)
|+||||+||++|+|++++++++++|||+. +|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+
T Consensus 396 T~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMk 474 (554)
T 3g4d_A 396 SFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYME 474 (554)
T ss_dssp CHHHHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHH
T ss_pred CHHHHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008427 487 QYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM 566 (566)
Q Consensus 487 e~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 566 (566)
|+|+|+|+|++++++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 475 e~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 475 EYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999998999999999999999999999999999999878999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=4.1e-167 Score=1366.57 Aligned_cols=535 Identities=44% Similarity=0.825 Sum_probs=509.4
Q ss_pred ccccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhc-cccCccchhhHHHHHHHHHHhCcccccHH
Q 008427 15 ADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS-NNTAWKTIEEIVTLVDQLQRLGVAYHFEN 93 (566)
Q Consensus 15 ~~~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~~~~~l~lID~lqrLGi~~hFe~ 93 (566)
.++.||+||||||+|||+||++.+. ++..+.+.+|+++||++||+||.. .+ +++++|+|||+||||||+|||++
T Consensus 13 ~~~~R~~~~~~ps~W~d~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~L~lID~lqrLGi~~hF~~ 87 (550)
T 3m00_A 13 EEIVRPVADFSPSLWGDQFLSFSIK-NQVAEKYAKEIEALKEQTRNMLLATGM----KLADTLNLIDTIERLGISYHFEK 87 (550)
T ss_dssp ---CCCCCCCCCCTTTTTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHTTCGGGCHH
T ss_pred cccCCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhHH
Confidence 3458999999999999999997543 344567899999999999999975 45 89999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccC
Q 008427 94 EIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYL 173 (566)
Q Consensus 94 EI~~~L~~i~~~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~LYeAs~l 173 (566)
||+++|++||++|. . ..||++|||+|||||||||+||||||++|||++|+|++++.+||+|||||||||||
T Consensus 88 EI~~~L~~i~~~~~------~---~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l 158 (550)
T 3m00_A 88 EIDDILDQIYNQNS------N---CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158 (550)
T ss_dssp HHHHHHHHHHHHCC------C---CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc------c---CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhc
Confidence 99999999999871 1 36999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHccCcccCCcchHHHhhhHH-hhhcCCccccHHHHHHHhhhhHH
Q 008427 174 RVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNL 252 (566)
Q Consensus 174 ~~~gE~iLdeA~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~-~Y~~~~~~~n~~lLelAkldFn~ 252 (566)
++|||+|||||++||++||++.+++++++|+++|+|||++|||+++||+|||+||+ +|+++ +++|++||||||||||+
T Consensus 159 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~-~~~n~~lLelAkldFn~ 237 (550)
T 3m00_A 159 RTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKE-QSKNNVLLRFAKLDFNL 237 (550)
T ss_dssp CCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGC-TTCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHH
Confidence 99999999999999999999988877888999999999999999999999999999 99999 99999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHH
Q 008427 253 LQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKL 332 (566)
Q Consensus 253 ~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ 332 (566)
||++||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.
T Consensus 238 ~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ 317 (550)
T 3m00_A 238 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEA 317 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Q 008427 333 FTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYM 412 (566)
Q Consensus 333 ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl 412 (566)
||+||+|||++++++||+|||+||.+++++++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||
T Consensus 318 ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl 397 (550)
T 3m00_A 318 YTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYL 397 (550)
T ss_dssp HHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999888899998999999999999999999999999999999999999
Q ss_pred hhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCCH
Q 008427 413 ENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSE 492 (566)
Q Consensus 413 ~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~ 492 (566)
+||++|+|++++++++++|+ +. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+
T Consensus 398 ~na~vSsg~~~l~~~~f~g~-~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSe 475 (550)
T 3m00_A 398 SNALATTTYYLLATTSYLGM-KS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIST 475 (550)
T ss_dssp HHHTGGGSHHHHHHHHHHTC-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCH
T ss_pred HhccccchHHHHHHHHHHcC-CC-CcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCH
Confidence 99999999999999998887 66 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHHHhhhcccCCC
Q 008427 493 EEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSSGKTKDRIASLLVDPLPM 566 (566)
Q Consensus 493 EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~~ 566 (566)
|+|++++++||+++||+||++|++++++|+||+++++|+||++++||+++ ||||.|+..||++|++||++||||
T Consensus 476 EeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 476 KEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 99999999999999999999999998999999999999999999999998 999999768999999999999996
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=6.7e-166 Score=1359.69 Aligned_cols=538 Identities=38% Similarity=0.679 Sum_probs=503.5
Q ss_pred ccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHhCcccccHHHHH
Q 008427 17 ENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIK 96 (566)
Q Consensus 17 ~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~ 96 (566)
..||+||||||+|||+||++.+. ++..+.+.+|+++||++||+||...++ +++++|+|||+||||||+|||++||+
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~---~~~~~L~lID~lqRLGi~~hF~~EI~ 88 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDT-DESIEVYKDKAKKLEAEVRREINNEKA---EFLTLLELIDNVQRLGLGYRFESDIR 88 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHCTTS---CHHHHHHHHHHHHHTTCGGGSHHHHH
T ss_pred ccCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 47999999999999999997543 345678899999999999999975321 68999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccCCCC
Q 008427 97 EDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQ 176 (566)
Q Consensus 97 ~~L~~i~~~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~ 176 (566)
++|++||+.- +++++ . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus 89 ~~L~~i~~~~-~~~~~-~---~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~ 163 (555)
T 3n0f_A 89 RALDRFVSSG-GFDGV-T---KTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALE 163 (555)
T ss_dssp HHHHHHHHTC-HHHHH-T---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhhc-ccccc-c---cCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccC
Confidence 9999999730 00111 1 46999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhcc-CCCCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhhhHHHHH
Q 008427 177 GENILEEACEFSRKHLKSLLP-HISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQE 255 (566)
Q Consensus 177 gE~iLdeA~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelAkldFn~~Q~ 255 (566)
||+|||||++||++||++.+. .++++|+++|++||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 164 gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~-~~~n~~lLelAKlDFN~~Q~ 242 (555)
T 3n0f_A 164 GENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK-EDANQVLLELAILDYNMIQS 242 (555)
T ss_dssp TCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999775 5678899999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHH
Q 008427 256 LHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 335 (566)
Q Consensus 256 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ 335 (566)
+||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+
T Consensus 243 ~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ 322 (555)
T 3n0f_A 243 VYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTD 322 (555)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 008427 336 AIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENS 415 (566)
Q Consensus 336 ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~ 415 (566)
||+|||++++++||+|||+||.+|+++++|++.++.++++.++++|++++|+++++||++||+|+++||+||+||||+||
T Consensus 323 ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na 402 (555)
T 3n0f_A 323 AVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNA 402 (555)
T ss_dssp HHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhc
Confidence 99999999999999999999999999999999888777777899999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCCHHHH
Q 008427 416 TMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEA 495 (566)
Q Consensus 416 ~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~EeA 495 (566)
++|+|+++++++++++||+. +|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|
T Consensus 403 ~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA 481 (555)
T 3n0f_A 403 WKSSSGPLQLIFAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELA 481 (555)
T ss_dssp HHHTSHHHHHHHHHHHHCSS-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHH
T ss_pred ccchhHHHHHHHHHHhcCCC-CCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008427 496 CNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLP 565 (566)
Q Consensus 496 ~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 565 (566)
++++++||+++||+||++|++++++|+||+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 482 ~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 482 TESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999899999999999999999999999999999976899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=2e-161 Score=1330.97 Aligned_cols=540 Identities=38% Similarity=0.655 Sum_probs=515.9
Q ss_pred cCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHhCcccccHHHHHH
Q 008427 18 NRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKE 97 (566)
Q Consensus 18 ~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~ 97 (566)
.||++|||||+|||+||++. .+++..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++||++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~-~~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~liD~lqrLGi~~hF~~EI~~ 75 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSL-LSDYKEDKHVIRASELVTLVKMELEKET----DQIRQLELIDDLQRMGLSDHFQNEFKE 75 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHC-CCSSCSTHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTGGGTTHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCC-CchhhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 38999999999999999864 3334456889999999999999998777 899999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccCCCCC
Q 008427 98 DLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQG 177 (566)
Q Consensus 98 ~L~~i~~~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~g 177 (566)
+|++||++|.++++|.... ..||++|||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++||
T Consensus 76 ~L~~i~~~~~~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~g 154 (543)
T 2ong_A 76 ILSSIYLDHHYYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEG 154 (543)
T ss_dssp HHHHHHHTTTCCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhhcccccccccc-cCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCC
Confidence 9999999984444342210 369999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhccC-C-CCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhhhHHHHH
Q 008427 178 ENILEEACEFSRKHLKSLLPH-I-STSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQE 255 (566)
Q Consensus 178 E~iLdeA~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelAkldFn~~Q~ 255 (566)
|+|||||++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 155 E~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~ 233 (543)
T 2ong_A 155 ETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR-PDMNPVVLELAILDLNIVQA 233 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccC-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999886 5 78899999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHH
Q 008427 256 LHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 335 (566)
Q Consensus 256 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ 335 (566)
+||+||++++|||+++||.+++||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+
T Consensus 234 ~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ 313 (543)
T 2ong_A 234 QFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTD 313 (543)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 008427 336 AIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENS 415 (566)
Q Consensus 336 ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~ 415 (566)
||+|||+++++.+|+|||+||.++++++++++.++.+.++.++++|++++|++++++|++||+|+++||+||+||||+||
T Consensus 314 ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~ 393 (543)
T 2ong_A 314 LIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENS 393 (543)
T ss_dssp HHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcc
Confidence 99999999999999999999999999999999988777777899999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCCHHHH
Q 008427 416 TMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEA 495 (566)
Q Consensus 416 ~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~EeA 495 (566)
.+|+|+++++++++++||.. +|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|
T Consensus 394 ~vS~g~~~l~~~~~~~~g~~-~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA 472 (543)
T 2ong_A 394 WQSISGPCMLTHIFFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEA 472 (543)
T ss_dssp HHHTCHHHHHHHHHHHHSSC-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHH
T ss_pred cccchHHHHHHHHHHHcCCC-CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008427 496 CNKIKEMVEIEWMNINEEI-QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLP 565 (566)
Q Consensus 496 ~~~i~~~i~~~wk~ln~e~-l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 565 (566)
+++++++|+++||+||++| ++++++|++|+++++|+||+++++|+++||||.|+..||++|++||++|||
T Consensus 473 ~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 473 RKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 9999999999999999999 998899999999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=5.9e-161 Score=1326.62 Aligned_cols=539 Identities=38% Similarity=0.690 Sum_probs=491.0
Q ss_pred ccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHhCcccccHHHHH
Q 008427 17 ENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIK 96 (566)
Q Consensus 17 ~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~ 96 (566)
+.||++|||||+|||+||+ ++++++..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++||+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~lvD~lqrLGi~~hF~~EI~ 78 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKM----EPVQQLELIHDLKYLGLSDFFQDEIK 78 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHhHHHHHhCCchhhhHHHHH
Confidence 4699999999999999994 555445567889999999999999998777 89999999999999999999999999
Q ss_pred HHHHHHHhhc-cCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccccc-ccccccccchHHHHhHhhhccCC
Q 008427 97 EDLQSIYNSH-VNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKG-EFKAMLTNDARGLLCLYEASYLR 174 (566)
Q Consensus 97 ~~L~~i~~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~l~~dv~glL~LYeAs~l~ 174 (566)
++|++||++| ... . ......||++|||+|||||||||+||||||++|||++| +|++++++||+|||||||||||+
T Consensus 79 ~~L~~i~~~~~~~~--~-~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~ 155 (549)
T 1n1b_A 79 EILGVIYNEHKCFH--N-NEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLL 155 (549)
T ss_dssp HHHHHHHHHCHHHH--H-CCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhcccc--c-cccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcC
Confidence 9999999986 210 0 00004699999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhhccC---C-CCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhhh
Q 008427 175 VQGENILEEACEFSRKHLKSLLPH---I-STSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 250 (566)
Q Consensus 175 ~~gE~iLdeA~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelAkldF 250 (566)
+|||+|||||++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++|||||||||
T Consensus 156 ~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldF 234 (549)
T 1n1b_A 156 RKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR-PDMNPLIFELAKLNF 234 (549)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhccc-ccccHHHHHHHHHhH
Confidence 999999999999999999999875 5 78899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHH
Q 008427 251 NLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEEL 330 (566)
Q Consensus 251 n~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl 330 (566)
|+||++||+||++++|||+++||.+++||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|+
T Consensus 235 n~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl 314 (549)
T 1n1b_A 235 NIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDEL 314 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 008427 331 KLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEE 410 (566)
Q Consensus 331 ~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleE 410 (566)
+.||+||+|||+++++.+|+|||+||.++++++++++.++.+.++.++++|++++|++++++|++||+|+++||+||+||
T Consensus 315 ~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eE 394 (549)
T 1n1b_A 315 ELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDE 394 (549)
T ss_dssp HHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999998887777778999999999999999999999999999999999
Q ss_pred HHhhcccccchhHHHHHHHHhcCCCCCcHHH-HHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcC
Q 008427 411 YMENSTMSSGYPMLAVEALVGLEDMAITKQA-LDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYG 489 (566)
Q Consensus 411 Yl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev-~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~g 489 (566)
||+||.+|+|+++++++++++||.. +|+++ ++|+.++|+++++++.|+||+|||+|+++|+++|+++|+|+|||+|+|
T Consensus 395 Yl~~~~vS~g~~~l~~~~~~~~g~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g 473 (549)
T 1n1b_A 395 YLNIAKISVASPAIISPTYFTFANA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETN 473 (549)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTSTTC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHC
T ss_pred HHHhcccchhHHHHHHHHHHHcCCC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcC
Confidence 9999999999999999999999999 99999 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008427 490 VSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLP 565 (566)
Q Consensus 490 vS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 565 (566)
+|+|+|++++++||+++||++|++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 474 ~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 474 ASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999987899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=5.6e-160 Score=1322.65 Aligned_cols=535 Identities=38% Similarity=0.647 Sum_probs=469.1
Q ss_pred ccccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHhCcccccHHH
Q 008427 15 ADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENE 94 (566)
Q Consensus 15 ~~~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~E 94 (566)
.+..||++|||||+|||+||++. .+.+..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++|
T Consensus 31 ~~~~r~~~~~~ps~W~~~fl~~~-~~~~~~~~~~~~~~~Lk~~Vr~~~~~~~----d~~~~l~lID~lqrLGi~~hFe~E 105 (569)
T 2j5c_A 31 KDRWIRTGGYQPTLWDFSTIQSF-DSEYKEEKHLMRAAGMIDQVKMMLQEEV----DSIRRLELIDDLRRLGISCHFERE 105 (569)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCGGGGHHH
T ss_pred ccccCCCCCCCCCcCCcccccCC-CchhhhHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHhCCchhhhHHH
Confidence 34579999999999999999864 3334456788999999999999998776 899999999999999999999999
Q ss_pred HHHHHHHHH-hhccCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccccc-ccccccccchHHHHhHhhhcc
Q 008427 95 IKEDLQSIY-NSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKG-EFKAMLTNDARGLLCLYEASY 172 (566)
Q Consensus 95 I~~~L~~i~-~~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~l~~dv~glL~LYeAs~ 172 (566)
|+++|++|| +++.. . ..||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||
T Consensus 106 I~~~L~~i~~~~~~~-----~---~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~ 177 (569)
T 2j5c_A 106 IVEILNSKYYTNNEI-----D---ERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASF 177 (569)
T ss_dssp HHHHHHHHTTSSCCS-----C---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCc-----c---cCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHh
Confidence 999999999 76410 1 5799999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhccCC-CCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhhhH
Q 008427 173 LRVQGENILEEACEFSRKHLKSLLPHI-STSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 251 (566)
Q Consensus 173 l~~~gE~iLdeA~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelAkldFn 251 (566)
|++|||+|||||++||++||++++.++ +++|+++|++||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 178 l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 256 (569)
T 2j5c_A 178 LSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR-PDMNPTVLELAKLDFN 256 (569)
T ss_dssp TCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC-ccccHHHHHHHHHhHH
Confidence 999999999999999999999998876 78999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHH
Q 008427 252 LLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELK 331 (566)
Q Consensus 252 ~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~ 331 (566)
+||++||+||++++|||+++||.+++||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++
T Consensus 257 ~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~ 336 (569)
T 2j5c_A 257 MVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQ 336 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 008427 332 LFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEY 411 (566)
Q Consensus 332 ~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEY 411 (566)
.||+||+|||+++++.+|+|||+||.++++++++++.++.+.+++++++|++++|++++++|++||+|+++||+||+|||
T Consensus 337 ~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEY 416 (569)
T 2j5c_A 337 LFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEY 416 (569)
T ss_dssp HHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999998877777789999999999999999999999999999999999
Q ss_pred HhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCC
Q 008427 412 MENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVS 491 (566)
Q Consensus 412 l~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS 491 (566)
|+||.+|+|+++++++++++||.. +|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|
T Consensus 417 l~~~~vSsg~~~l~~~~~~~~g~~-lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s 495 (569)
T 2j5c_A 417 MKNSWISIGGIPILSHLFFRLTDS-IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNAS 495 (569)
T ss_dssp HHHHHHHTSCHHHHHHHHHHSCSS-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------C
T ss_pred HhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHHHhhhcccCC
Q 008427 492 EEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSSGKTKDRIASLLVDPLP 565 (566)
Q Consensus 492 ~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~ 565 (566)
+|+|+++++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|+..||++|++||++|||
T Consensus 496 ~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 496 EEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999 8999999999999999999999999 99999977899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=3.8e-144 Score=1232.82 Aligned_cols=492 Identities=36% Similarity=0.648 Sum_probs=459.9
Q ss_pred chhhHHHHHHHHHHhCcccccHHHHHHHHHHHHhhc-cCCCCCCCCCC-CCchHHHHHHHHHHhhcCceeehhhhccccc
Q 008427 71 TIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSH-VNSNCDVNYDH-NNDLYTVALRFRLLRQHGYKVSADIFKKFKD 148 (566)
Q Consensus 71 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~-~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d 148 (566)
|++++|++||+||||||+|||++||+++|++||+.| ++|+++.+ ++ ..||++|||+|||||||||+||||||++|+|
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~-~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 375 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGR-LNPIADLETTALGFRLLRLHRYNVSPAIFDNFKD 375 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSST-TCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccc-CCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhh
Confidence 899999999999999999999999999999999999 66654421 11 4699999999999999999999999999999
Q ss_pred ccccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhccC--------CCCcHHHHHHHHccCcccC
Q 008427 149 EKGEFKAML---TNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH--------ISTSLANQVEHSLEIPLHR 217 (566)
Q Consensus 149 ~~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~ 217 (566)
++|+|++++ .+||+|||||||||||++|||+|||||++||++||++.+.. ++++|++||+|||++|||+
T Consensus 376 ~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~ 455 (817)
T 3sdr_A 376 ANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHA 455 (817)
T ss_dssp C--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTT
T ss_pred cCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhc
Confidence 999999865 69999999999999999999999999999999999998653 2367999999999999999
Q ss_pred CcchHHHhhhHHhhhcCCcc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHH
Q 008427 218 GMPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLV 285 (566)
Q Consensus 218 ~~~rlear~yI~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 285 (566)
++||||||+||++|+++ +. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++
T Consensus 456 ~l~Rlear~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 533 (817)
T 3sdr_A 456 SVPRVEAKRYCQVYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPL 533 (817)
T ss_dssp CCHHHHHHHHHTTCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHH
T ss_pred cChHHHHHHHHHHhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHH
Confidence 99999999999999988 65 499999999999999999999999999999999999 59999999999
Q ss_pred HhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHH
Q 008427 286 ECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKE 365 (566)
Q Consensus 286 e~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~e 365 (566)
|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|
T Consensus 534 e~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e 613 (817)
T 3sdr_A 534 EFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHE 613 (817)
T ss_dssp HHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhH-HHHHHHHhcCCCCCcHHHHHh
Q 008427 366 MEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPM-LAVEALVGLEDMAITKQALDW 444 (566)
Q Consensus 366 i~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~-~~~~~~~~~G~~~l~~ev~e~ 444 (566)
++.++.++++.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ +++++++++|.. +|+++++|
T Consensus 614 ~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~-lt~e~~e~ 692 (817)
T 3sdr_A 614 VAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQL-LSQEALEK 692 (817)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCC-CCHHHHHT
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCC-CCHHHHhc
Confidence 9988877655589999999999999999999999999999999999999999999999 888888999999 99999999
Q ss_pred cc--chhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008427 445 AI--SVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQY-GVSEEEACNKIKEMVEIEWMNINEEIQDPNHPP 521 (566)
Q Consensus 445 ~~--~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~-gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p 521 (566)
+. +.|+|+++++.|+||+|||+||++|++||+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|++++++|
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p 772 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 65 445999999999999999999999999999999999999999 799999999999999999999999999988999
Q ss_pred hhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008427 522 LQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM 566 (566)
Q Consensus 522 ~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 566 (566)
++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 773 ~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.4e-143 Score=1220.89 Aligned_cols=489 Identities=33% Similarity=0.581 Sum_probs=459.6
Q ss_pred chhhHHHHHHHHHHhCcccccHHHHHHHHHHHHhhc-cCCCCCCCCCC-CCchHHHHHHHHHHhhcCceeehhhhccccc
Q 008427 71 TIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSH-VNSNCDVNYDH-NNDLYTVALRFRLLRQHGYKVSADIFKKFKD 148 (566)
Q Consensus 71 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~-~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d 148 (566)
|++++|++||+||||||+|||++||+++|++||+.| ++|+++.+ ++ ..||++|||+|||||||||+||||||++|+|
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~-~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 323 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGR-DSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKD 323 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSST-TCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccc-CCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhc
Confidence 899999999999999999999999999999999999 66654422 11 4699999999999999999999999999999
Q ss_pred cccccccc---cccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhcc---CCCCcHHHHHHHHccCcccCCcchH
Q 008427 149 EKGEFKAM---LTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLP---HISTSLANQVEHSLEIPLHRGMPRL 222 (566)
Q Consensus 149 ~~g~F~~~---l~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rl 222 (566)
++|+|+++ +.+||+|||||||||||++|||+|||||++||++||++.+. .++++|++||+|||++|||+++|||
T Consensus 324 ~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rl 403 (764)
T 3p5p_A 324 ENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRL 403 (764)
T ss_dssp TTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHH
T ss_pred CCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHH
Confidence 99999974 58999999999999999999999999999999999999875 3578899999999999999999999
Q ss_pred HHhhhHHhhhcCCcc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHH
Q 008427 223 EARQYISIYEADNST------------RNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFW 290 (566)
Q Consensus 223 ear~yI~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~ 290 (566)
|||+||++|+++ +. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++|||||
T Consensus 404 ear~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw 481 (764)
T 3p5p_A 404 EARSYIDSYDDN-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFS 481 (764)
T ss_dssp HHHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHH
Confidence 999999999987 65 499999999999999999999999999999999999 5999999999999999
Q ss_pred hhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhch
Q 008427 291 ILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKP 370 (566)
Q Consensus 291 ~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~ 370 (566)
++| |||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++
T Consensus 482 ~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~ 559 (764)
T 3p5p_A 482 SAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDV 559 (764)
T ss_dssp TCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hc-cCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchh
Q 008427 371 VN-KEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVP 449 (566)
Q Consensus 371 ~~-~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~ 449 (566)
.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.+++++|.. +|+++++|+..+|
T Consensus 560 ~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~-lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 560 VKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSC-CCGGGHHHHSTTS
T ss_pred HHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCC-CcHHHHhhhhhhH
Confidence 66 565 78999999999999999999999999999999999999999999999999999999999 9999999966669
Q ss_pred HHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCChhHHHH
Q 008427 450 KIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQY-GVSEEEACNKIKEMVEIEWMNINEEIQD-PNHPPLQWLLP 527 (566)
Q Consensus 450 ~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~-gvS~EeA~~~i~~~i~~~wk~ln~e~l~-~~~~p~~~~~~ 527 (566)
+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++ ++++|++|+++
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~ 717 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSF 717 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHH
T ss_pred HHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999 7999999999999999999999999997 78899999999
Q ss_pred HHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008427 528 SLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM 566 (566)
Q Consensus 528 ~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 566 (566)
++|+||++++||+++||||.|+..||++|++||++||++
T Consensus 718 ~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 718 IFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999767999999999999984
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.5e-143 Score=1223.53 Aligned_cols=489 Identities=33% Similarity=0.611 Sum_probs=462.5
Q ss_pred chhhHHHHHHHHHHhCcccccHHHHHHHHHHHHhhc-cCCCCCCCCCC-CCchHHHHHHHHHHhhcCceeehhhhccccc
Q 008427 71 TIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSH-VNSNCDVNYDH-NNDLYTVALRFRLLRQHGYKVSADIFKKFKD 148 (566)
Q Consensus 71 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~-~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d 148 (566)
|++++|++||+||||||+|||++||+++|++||+.| ++++++.. ++ ..||++|||+|||||||||+||||||++|+|
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~-~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 347 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWAR-ENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRD 347 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSST-TCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccc-cCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 799999999999999999999999999999999999 66654421 11 4699999999999999999999999999999
Q ss_pred ccccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhccC--------CCCcHHHHHHHHccCcccC
Q 008427 149 EKGEFKAML---TNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPH--------ISTSLANQVEHSLEIPLHR 217 (566)
Q Consensus 149 ~~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~ 217 (566)
++|+|++++ .+||+|||||||||||++|||+|||||++||++||++.+.. ++++|++||+|||++|||+
T Consensus 348 ~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~ 427 (785)
T 3s9v_A 348 ENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHK 427 (785)
T ss_dssp TTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGG
T ss_pred cCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCcccc
Confidence 999999866 69999999999999999999999999999999999998652 4678999999999999999
Q ss_pred CcchHHHhhhHHhhhcCCcc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHH
Q 008427 218 GMPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLV 285 (566)
Q Consensus 218 ~~~rlear~yI~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 285 (566)
++||||||+||++|+++ +. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++
T Consensus 428 ~l~RleaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 505 (785)
T 3s9v_A 428 SMPRLEARSYIENYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVT 505 (785)
T ss_dssp CCHHHHHHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHH
T ss_pred CchHHHHHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHH
Confidence 99999999999999988 65 499999999999999999999999999999999999 69999999999
Q ss_pred HhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHH
Q 008427 286 ECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKE 365 (566)
Q Consensus 286 e~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~e 365 (566)
|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|
T Consensus 506 e~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~ne 585 (785)
T 3s9v_A 506 EIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFND 585 (785)
T ss_dssp HHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhc-cCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHh
Q 008427 366 MEDKPVN-KEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDW 444 (566)
Q Consensus 366 i~~~~~~-~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~ 444 (566)
++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||.. +|+++++|
T Consensus 586 i~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~-lt~e~~e~ 663 (785)
T 3s9v_A 586 IAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEV-LTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSC-CCHHHHTT
T ss_pred HHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCC-CCHHHHhc
Confidence 9988776 566 78999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 008427 445 AISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQY-GVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQ 523 (566)
Q Consensus 445 ~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~-gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 523 (566)
+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++++ +|++
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~ 742 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDI 742 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHH
Confidence 65569999999999999999999999999999999999999999 999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhhhhchhcccCCCCCCCCh-hHHHHHHhhhcccCC
Q 008427 524 WLLPSLNLARMMVVLYQNGDGYTNSSG-KTKDRIASLLVDPLP 565 (566)
Q Consensus 524 ~~~~~lN~aR~~~~~Y~~~Dg~t~~~~-~~k~~i~~ll~~pi~ 565 (566)
|+++++|+||++++||+++||||.|+. .||++|++||++||.
T Consensus 743 ~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 743 YKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999999999999999975 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.1e-108 Score=926.46 Aligned_cols=455 Identities=24% Similarity=0.337 Sum_probs=392.9
Q ss_pred HHHHHHHHHHHHHHHhc-----cccCccchhhHHHHHHHHHHhCcccccHHHHHHHHHHHHhhc-cCCCCCCCCCCCCch
Q 008427 48 EKRFETLKAEVEKLLMS-----NNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSH-VNSNCDVNYDHNNDL 121 (566)
Q Consensus 48 ~~~~~~lk~~v~~~l~~-----~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~dl 121 (566)
.+..+-|+..|++...+ +. |++++|++||+||||||+|||++||+++|+++|+.| ++++++.......||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~----d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL 295 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPV----DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDI 295 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCC----HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCH
Confidence 45567788888876542 25 899999999999999999999999999999999999 666544220114699
Q ss_pred HHHHHHHHHHhhcCceeehhhhccccccccccccc---cccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhhcc-
Q 008427 122 YTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAM---LTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLP- 197 (566)
Q Consensus 122 ~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~---l~~dv~glL~LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~- 197 (566)
++|||+|||||||||+||||||++|+ ++|+|++. ..+||+||||||||||+++|||+|||||++||++||++.+.
T Consensus 296 ~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~ 374 (727)
T 3pya_A 296 DDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRER 374 (727)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 88999953 36899999999999999999999999999999999998764
Q ss_pred -C------CCCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCcc-------------ccHHHHHHHhhhhHHHHHhh
Q 008427 198 -H------ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQELH 257 (566)
Q Consensus 198 -~------~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~-------------~n~~lLelAkldFn~~Q~~h 257 (566)
. ++++|+++|+|||++|||+++||||||+||++|+++ ++ +|++||||||||||+||++|
T Consensus 375 ~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~h 453 (727)
T 3pya_A 375 EELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQH 453 (727)
T ss_dssp TCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHh
Confidence 2 257899999999999999999999999999999976 44 69999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Q 008427 258 RRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 337 (566)
Q Consensus 258 q~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai 337 (566)
|+||++++||||++|| .++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| |||++||+||
T Consensus 454 q~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av 530 (727)
T 3pya_A 454 QLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQF 530 (727)
T ss_dssp HHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHH
T ss_pred HHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHH
Confidence 9999999999999999 579999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhhhh---------hhcc---CChh--HHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCC
Q 008427 338 ERWEVA---------AANE---LPKY--MQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAK 403 (566)
Q Consensus 338 ~rWd~~---------~~~~---lPe~--mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g 403 (566)
+|||.+ +.+. +|+| ||+||.+|++|+||++.++.+++|.++.+|++++|.++++++++||+ +
T Consensus 531 ~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--- 606 (727)
T 3pya_A 531 HEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--- 606 (727)
T ss_dssp HHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C---
T ss_pred HhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c---
Confidence 999974 3333 3877 99999999999999997776655557899999999999999999998 2
Q ss_pred CCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhH
Q 008427 404 YVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVEC 483 (566)
Q Consensus 404 ~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~c 483 (566)
+| |. +++-.+.+..|.. +++ ++.+ +.+..|.++++.||||+||+.+|++|+
T Consensus 607 -----~E---------Ae-llv~~I~l~sG~~-l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~----------- 657 (727)
T 3pya_A 607 -----GE---------GE-LMVKMIILMKNND-LTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE----------- 657 (727)
T ss_dssp -----CH---------HH-HHHHHHHHHSSSC-GGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------
T ss_pred -----cc---------ee-eeeeeeecCCCcc-hHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------
Confidence 33 11 3333333333887 888 8777 889999999999999999999999976
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhc
Q 008427 484 YMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPN--HPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLV 561 (566)
Q Consensus 484 yMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~ 561 (566)
.+++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||++|+ |..+|.+||+
T Consensus 658 ------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl~ 716 (727)
T 3pya_A 658 ------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVLF 716 (727)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHHc
Confidence 55789999999999999999754 699999 888888889985 999995 9999999999
Q ss_pred ccCC
Q 008427 562 DPLP 565 (566)
Q Consensus 562 ~pi~ 565 (566)
+||-
T Consensus 717 ~~~~ 720 (727)
T 3pya_A 717 QKVG 720 (727)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 9984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=2.3e-51 Score=428.54 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=230.4
Q ss_pred HHHhhHHHHHHHH-HHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhH-HHHHHHHHHHHHhhhhccc--CCHH
Q 008427 253 LQELHRRELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRK-FMTKIIAIASVIDDIYDVY--GTLE 328 (566)
Q Consensus 253 ~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~viDD~fD~y--gt~e 328 (566)
-+..|.+|++..+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++
T Consensus 14 ~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~e 92 (337)
T 1ps1_A 14 RQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPE 92 (337)
T ss_dssp CCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHH
Confidence 3456778887776 6999999964 69999999999999999999999999999 9999999999999999998 6999
Q ss_pred HHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCC-C
Q 008427 329 ELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVP-T 407 (566)
Q Consensus 329 El~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vP-t 407 (566)
|++.|++++.+|+.+ .+|+++++++.++.+++++++..+.+ ....+++++|++|++++++||+|+.+|++| |
T Consensus 93 e~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s 165 (337)
T 1ps1_A 93 DTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWRNYFDGYVDEAESRFWNAPCDS 165 (337)
T ss_dssp HHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999864 47999999999999999999876544 357899999999999999999999999999 9
Q ss_pred HHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhh
Q 008427 408 FEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQ 487 (566)
Q Consensus 408 leEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke 487 (566)
++|||++|++|+|++++++++++++|.. +|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||++
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~ 243 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRRE 243 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHH
Confidence 9999999999999999999999999999 99999988 778899999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008427 488 YGVSEEEACNKIKEMVEIEWMNINEEI 514 (566)
Q Consensus 488 ~gvS~EeA~~~i~~~i~~~wk~ln~e~ 514 (566)
+|+|+|+|++++.++|+++||++|++.
T Consensus 244 ~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 244 HGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.5e-49 Score=406.23 Aligned_cols=242 Identities=12% Similarity=0.103 Sum_probs=223.1
Q ss_pred hhHHHHHHHH-HHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhH-HHHHHHHHHHHHhhhhcccCCHHHHHHH
Q 008427 256 LHRRELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRK-FMTKIIAIASVIDDIYDVYGTLEELKLF 333 (566)
Q Consensus 256 ~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~viDD~fD~ygt~eEl~~f 333 (566)
-|.+|++..+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 4777888877 577999996 579999999999999999999999999999 999999999999999999 889999999
Q ss_pred HHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHh
Q 008427 334 THAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYME 413 (566)
Q Consensus 334 t~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~ 413 (566)
++++.||+.+ +.+|++|+++++++++++++++..++ .+.++.|+.++++|+ ||+|+.+|++||++|||+
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999875 46899999999999999999986552 346677999999997 899999999999999999
Q ss_pred hcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCC--------CCchhhHHH
Q 008427 414 NSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGD--------APSSVECYM 485 (566)
Q Consensus 414 ~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd--------~~n~V~cyM 485 (566)
+|++|+|+++++++++++||.. +|+++++. .++|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLR-LSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCC-CCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCC-CCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 9999999999999999999999 99999983 69999999999999999999999999999 779999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008427 486 QQYGVSEEEACNKIKEMVEIEWMNINEEI 514 (566)
Q Consensus 486 ke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 514 (566)
+++|+|+|+|++++.++|+++||++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.6e-48 Score=400.13 Aligned_cols=248 Identities=17% Similarity=0.150 Sum_probs=222.5
Q ss_pred hHHHHHhhHHHHHHHH-HHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhH-HHHHHHHHHHHHhhhhcccCCH
Q 008427 250 FNLLQELHRRELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRK-FMTKIIAIASVIDDIYDVYGTL 327 (566)
Q Consensus 250 Fn~~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~viDD~fD~ygt~ 327 (566)
|..-...|.+|+++.+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |++
T Consensus 21 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~ 98 (320)
T 3bny_A 21 FQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSF 98 (320)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CCh
Confidence 3344456778888877 57799999755 9999999999999999999999999999 999999999999999999 899
Q ss_pred HHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 008427 328 EELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPT 407 (566)
Q Consensus 328 eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPt 407 (566)
+|++.|++++.+|+.+ +.+|++|++++.++++++++++..+ + .+.++.|+.++ ++++|++|+.+|++||
T Consensus 99 ~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps 167 (320)
T 3bny_A 99 EEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMG 167 (320)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCC
T ss_pred hhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCC
Confidence 9999999999999865 4689999999999999999998654 2 24455576677 5999999999999999
Q ss_pred HHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCC--------CCc
Q 008427 408 FEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGD--------APS 479 (566)
Q Consensus 408 leEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd--------~~n 479 (566)
++|||++|++|+|+++++++++++||.. +|+++++. +++|+++++.++||+|||+||+||+++|+ ++|
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N 243 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLK-LSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCT 243 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCS
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCC-CCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999 99999984 69999999999999999999999999998 789
Q ss_pred hhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008427 480 SVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEI 514 (566)
Q Consensus 480 ~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 514 (566)
+|.|||+++|+|+|+|++++.++|++.|+++|+..
T Consensus 244 ~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 244 SVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999755
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=6.2e-46 Score=395.02 Aligned_cols=243 Identities=11% Similarity=-0.027 Sum_probs=225.4
Q ss_pred HHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhH-HHHHHHHHHHHHhhhhcc--cC-CHHHHHHHHHHHHH
Q 008427 264 ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRK-FMTKIIAIASVIDDIYDV--YG-TLEELKLFTHAIER 339 (566)
Q Consensus 264 lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~viDD~fD~--yg-t~eEl~~ft~ai~r 339 (566)
+.+||+++|+. ..+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 45799999995 347899999999999999999999999999 999999999999999996 66 99999999999998
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccc
Q 008427 340 WEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSS 419 (566)
Q Consensus 340 Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~ 419 (566)
+-.. ...+|++++++++++.+++++++..+.+. ...+++++|++++++|++||+|+.+|++||++|||++|++|+
T Consensus 145 ~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~~----~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPAT----WNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HhcC-CCCCCCCCChHHHHHHHHHHHHHccCCHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 7222 23368899999999999999998766552 478999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCCCHHHHHHHH
Q 008427 420 GYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKI 499 (566)
Q Consensus 420 g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gvS~EeA~~~i 499 (566)
|++++++++++++|.. +|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++
T Consensus 220 g~~~~~~l~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v 297 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEV 297 (382)
T ss_dssp THHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999 99999998 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 008427 500 KEMVEIEWMNINEEI 514 (566)
Q Consensus 500 ~~~i~~~wk~ln~e~ 514 (566)
++||+++||+||+..
T Consensus 298 ~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 298 RRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999743
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=4.5e-33 Score=299.50 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=189.0
Q ss_pred HHHH-HHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCC-chhhH-HHHHHHHHHHHHhhh-hcccC-CHHHH-HHH
Q 008427 260 ELSE-ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKY-SITRK-FMTKIIAIASVIDDI-YDVYG-TLEEL-KLF 333 (566)
Q Consensus 260 El~~-lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~-s~~Rl-~~aK~~~l~~viDD~-fD~yg-t~eEl-~~f 333 (566)
|++. +..|..++++... +-.|+++..+-|-.++++..|.. +..|+ +++|+++|+|++||. +|..| +.+.+ ..+
T Consensus 130 ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l 208 (433)
T 3v1v_A 130 EVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRL 208 (433)
T ss_dssp HHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHH
Confidence 5544 4469999876433 33577888875555544455999 79999 999999999999999 59755 33221 112
Q ss_pred HH---HHHHhh----hhhhc--cCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 008427 334 TH---AIERWE----VAAAN--ELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKY 404 (566)
Q Consensus 334 t~---ai~rWd----~~~~~--~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~ 404 (566)
.. ++.... ..... ..++ .++..+++++++++.+.+.+ ....+++++|++|+++|++||+|+.+|+
T Consensus 209 ~~a~~~~d~l~~~~~g~p~~~~~~~~--dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 209 LLAHTAIDHFHSTAEYTPTWQASLAA--DAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHTTTSCCCCCTTTHHHHHHHTTS--SHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhcccCCCCccccccCC--chHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 21 111100 00000 0011 24578999999999766554 3488999999999999999999999999
Q ss_pred CCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCC-CCCchhhH
Q 008427 405 VPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERG-DAPSSVEC 483 (566)
Q Consensus 405 vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG-d~~n~V~c 483 (566)
+||++|||++|++| |+.+++.++.+++|.. +|++++++ +.+.+|+++++.++||+|||+||+||+++| +++|+|.|
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~ 359 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYE-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVV 359 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCC-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHH
Confidence 99999999999999 7777777788889999 99999998 778899999999999999999999999995 78999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008427 484 YMQQYGVSEEEACNKIKEMVEIEWMNINEEI 514 (566)
Q Consensus 484 yMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 514 (566)
||+++|+|+|+|++++.+||++.++++.+..
T Consensus 360 ~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 360 IAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987644
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.76 E-value=8.1e-18 Score=177.58 Aligned_cols=246 Identities=10% Similarity=-0.018 Sum_probs=180.1
Q ss_pred HHHHHHHHhC------------CCCCChhhHhhHHHhHHHhhccccCCCCchhhH-HHHHHHHHHHHHhhhhcccCCHHH
Q 008427 263 EISRWWKDID------------FATKLPFARDRLVECYFWILGVYFEPKYSITRK-FMTKIIAIASVIDDIYDVYGTLEE 329 (566)
Q Consensus 263 ~lsrWwk~~~------------l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~viDD~fD~ygt~eE 329 (566)
+..+|..+.| +. .-+-..++++.+=.|+++..| |..+...+ .++++++|+|++||++|..+ ++
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 4447888888 52 223356677777677666555 99999888 99999999999999999654 66
Q ss_pred HHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH
Q 008427 330 LKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFE 409 (566)
Q Consensus 330 l~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtle 409 (566)
+..|.+.+-+ .. .|+ .++..++.+.+.++.+.+.+ .+..++.++|.+++.+++.|+.. .+..|+.+
T Consensus 110 l~~~~~~ll~--G~----~~~--~Pl~~al~dl~~rl~~~~~p----~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~ 175 (374)
T 1yyq_A 110 MVNYFDDLQA--GR----EQA--HPWWALVNEHFPNVLRHFGP----FCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSH 175 (374)
T ss_dssp HTTHHHHHHH--TC----CCS--SHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCT
T ss_pred HHHHHHHHhc--CC----CCC--ChHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHH
Confidence 7777766553 11 121 26778888899988665544 46888999999999999999873 67789999
Q ss_pred HHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhc-CCCCCchhhHHHhhc
Q 008427 410 EYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQE-RGDAPSSVECYMQQY 488 (566)
Q Consensus 410 EYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~-rGd~~n~V~cyMke~ 488 (566)
+|...++.++|+.-.... +.++.. +.++... .+.+..++.....++.|+|||.||.||.. .|+.+|.|.+++.++
T Consensus 176 ~Y~~~rR~~sG~~E~~~~--~~~P~~-~~~e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~ 251 (374)
T 1yyq_A 176 DYPQFLRRMNGLGHCVGA--SLWPKE-QFNERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSD 251 (374)
T ss_dssp THHHHHHHHHHCHHHHHH--TTCCTT-TCCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHH--hhcccc-ccchhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcC
Confidence 999998888887543332 112222 2211111 13456677777779999999999999998 499999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhh
Q 008427 489 GVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLAR 533 (566)
Q Consensus 489 gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR 533 (566)
|+|.++|++++..++..+..++-+ .+. ...|. ++..+-+..|
T Consensus 252 g~S~~eAl~~v~~~~~~~~~r~~~-~L~-~~~~~-~l~al~~~ir 293 (374)
T 1yyq_A 252 EISLHEALEKLTQDTLHSSKQMVA-VFS-DKDPQ-VMDTIECFMH 293 (374)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH-HHS-SSCHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-Hhc-cCCHH-HHHHHHHHHh
Confidence 999999999999999988888755 332 22332 4444444444
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.09 E-value=0.00015 Score=83.37 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=28.5
Q ss_pred ccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHh
Q 008427 17 ENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLM 63 (566)
Q Consensus 17 ~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 63 (566)
+.||+|||+||+|+++||++.. ..+.++.+.+++++|+++||+||.
T Consensus 23 ~~Rrsany~Ps~W~~~~i~sl~-~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 23 LIRRTANPHPNVWGYDLVHSLK-SPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ------------CHHHHHHTCC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCeeeccC-CcccchhHHHHHHHHHHHHHHHhc
Confidence 4799999999999999998643 334567889999999999999996
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=90.36 E-value=15 Score=36.47 Aligned_cols=191 Identities=17% Similarity=0.123 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHh-hhhhh--ccCChhHHHHHHHHHHHHHHHHhchhccCCCcc
Q 008427 302 ITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERW-EVAAA--NELPKYMQVCYFALLDVVKEMEDKPVNKEPPGC 378 (566)
Q Consensus 302 ~~Rl~~aK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rW-d~~~~--~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 378 (566)
..|-.+.-+-.|.-.+||+-|....+.+|+.+.+.+++- +.... ...|. .++..++..++.+.. . .
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~--------l-~ 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKN--------I-A 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSC--------C-C
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhC--------C-C
Confidence 467667778888889999999766544455555555431 11110 00022 367788887765531 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhH
Q 008427 379 MHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLI 458 (566)
Q Consensus 379 ~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i 458 (566)
++.+.+++.++-. +......+|++|+......+.|+--.+++-.++ .. -.++..+. ....+.-
T Consensus 107 ----~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g--~~-~~~~~~~~-------A~~lG~A 169 (293)
T 3acx_A 107 ----FQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILS--DH-ETHQTYDV-------ARRLGES 169 (293)
T ss_dssp ----HHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC--SS-CCHHHHHH-------HHHHHHH
T ss_pred ----HHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC--CC-CcHHHHHH-------HHHHHHH
Confidence 3445666777753 344456789998888888777765555554443 32 11333322 2222222
Q ss_pred hh---hccCccchhhhhcCCCC--CchhhHHHhhcCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCChhH
Q 008427 459 AR---LDDDVRTYKVEQERGDA--PSSVECYMQQYGVSEEE---------ACNKIKEMVEIEWMNINEEIQDPNHPPLQW 524 (566)
Q Consensus 459 ~R---L~NDI~S~~kE~~rGd~--~n~V~cyMke~gvS~Ee---------A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~ 524 (566)
.- ++-|+. ....+|-+ +.- .|.++|++.++ ..+-+..++..+..-+.+..--...+|...
T Consensus 170 lQltNilRDv~---eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 170 LQLINILRDVG---EDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp HHHHHHHHCHH---HHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred HHHHHHHHHHH---HHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 22 334543 33445643 332 36788998776 234455666666655554321123466544
Q ss_pred HH
Q 008427 525 LL 526 (566)
Q Consensus 525 ~~ 526 (566)
..
T Consensus 244 r~ 245 (293)
T 3acx_A 244 QP 245 (293)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=85.71 E-value=5.4 Score=41.36 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
.+..+.+++..++.+-..+..|.... ||.++|+..-..-+|..+..++..-++ +. .+++..+. ...+-+..+
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~---l~~~g~~lG 233 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDA---LKNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 46778888999999999999997665 999999988777666654433222111 22 35555544 367788889
Q ss_pred hHhhhccCccchhh
Q 008427 457 LIARLDDDVRTYKV 470 (566)
Q Consensus 457 ~i~RL~NDI~S~~k 470 (566)
+..-+.||+..+.-
T Consensus 234 ~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 234 MIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccC
Confidence 99999999987753
No 20
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=85.30 E-value=3.7 Score=41.33 Aligned_cols=143 Identities=6% Similarity=-0.022 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
.+..+.++...++.+-..+..|... .||.++|+..-..-+|..+..+...-+ ++. .+++..+. ...+-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELAER---FSHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4556677777888898888888654 489999998877666665443322111 122 35555544 367788889
Q ss_pred hHhhhccCccchhhhh-----cCCCCCchhhHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hHHHHH
Q 008427 457 LIARLDDDVRTYKVEQ-----ERGDAPSSVECYMQQYGV--SEEEACNKIKEMVEIEWMNINEEIQDPNHPPL-QWLLPS 528 (566)
Q Consensus 457 ~i~RL~NDI~S~~kE~-----~rGd~~n~V~cyMke~gv--S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~~ 528 (566)
+..-+.||+..+.... ..|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +-++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHHH
Confidence 9999999998875432 2233 3667677654421 1455555556666666555432 443 455566
Q ss_pred HHHhhhh
Q 008427 529 LNLARMM 535 (566)
Q Consensus 529 lN~aR~~ 535 (566)
.++++.+
T Consensus 273 ~~l~~~~ 279 (295)
T 3ipi_A 273 FQITDYI 279 (295)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666543
No 21
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=82.62 E-value=41 Score=33.43 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHhhhhcccCC--HHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchH
Q 008427 303 TRKFMTKIIAIASVIDDIYDVYGT--LEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMH 380 (566)
Q Consensus 303 ~Rl~~aK~~~l~~viDD~fD~ygt--~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~ 380 (566)
.|-.+.-+-.|.=.+||+-|.... ...|+.+-+.+.+- ...-|. .+++.++..++.+.. ++
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~----~~g~~~--~pv~~al~~~~~~~~--l~--------- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA----FAGEAT--TPAFRALQFTIATCN--LP--------- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH----HHTCCC--SHHHHHHHHHHHHHT--CC---------
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH----hcCCCC--CHHHHHHHHHHHHcC--CC---------
Confidence 455555666777889999996442 23344444444332 111122 267888888877652 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhh
Q 008427 381 YAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIAR 460 (566)
Q Consensus 381 ~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~R 460 (566)
++.+.+++.++..... ....+|++|+......+.|+--.+++-.+ |.. +++..... ...+.-.-
T Consensus 103 --~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~--~~~~~~~A-------~~lG~AlQ 166 (294)
T 4hd1_A 103 --MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL--DDERARLS-------DATCTALQ 166 (294)
T ss_dssp --SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC--SHHHHHHH-------HHHHHHHH
T ss_pred --HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC--CHHHHHHH-------HHHHHHHH
Confidence 2335566777764433 34568988887777777665444444333 433 33333321 22222222
Q ss_pred hccCccchhhhhcCCCC--CchhhHHHhhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q 008427 461 LDDDVRTYKVEQERGDA--PSSVECYMQQYGVSEEEA---------CNKIKEMVEIEWMNINEEIQDPNHPPLQWLL 526 (566)
Q Consensus 461 L~NDI~S~~kE~~rGd~--~n~V~cyMke~gvS~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~ 526 (566)
|.|=+-......++|-+ +. -.|.++|+|.++- ..-+..+++.+..-+.+..--...+|..+..
T Consensus 167 ltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~ 240 (294)
T 4hd1_A 167 VANHMQDIDRDLALGRIYVPR---ADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLAR 240 (294)
T ss_dssp HHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHHH
T ss_pred HHHHHHhchhhhccCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33322222333455643 33 3477889988752 2234444444443333322112447765443
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=74.42 E-value=13 Score=37.35 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCcc
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVR 466 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 466 (566)
..++.+-..+..|... .+|.++|+..-..-+|..+..+...-++--. .+++..+. ..++-...++..-+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~aFQI~DDil 221 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN-VDDTTKEH---LESYSYHLGMMFQIKDDLL 221 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5577777777777543 7899999998777666654433221111011 35555544 3778888999999999998
Q ss_pred chhhhh-cCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 467 TYKVEQ-ERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 467 S~~kE~-~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
.+.-.. .-|. . .+.+.+|- .+.|.+.+.+.++++.+.+..
T Consensus 222 D~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 222 DCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 875432 1121 1 25554443 578888888888888877654
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=74.34 E-value=28 Score=35.69 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
.+..+.++...++.+-+.+..|.. +.-||.++|+..-..-+|..+..+...-++=-. .+++..+. ...+-+..++
T Consensus 152 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~ 226 (345)
T 3oyr_A 152 ALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAG-VDVAKSEA---LRDYGLNLGL 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 566778888889999998888864 345899999998777776654433222111112 35555544 3678888999
Q ss_pred HhhhccCccchhh
Q 008427 458 IARLDDDVRTYKV 470 (566)
Q Consensus 458 i~RL~NDI~S~~k 470 (566)
..-+.||+..+.-
T Consensus 227 aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 227 AFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHHhccC
Confidence 9999999988754
No 24
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=72.97 E-value=32 Score=34.21 Aligned_cols=120 Identities=9% Similarity=-0.012 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHH--HhcCCCCCcHHHHHhccchhHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEAL--VGLEDMAITKQALDWAISVPKIIRYS 455 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~~l~~ev~e~~~~~~~l~~~~ 455 (566)
.+..+.++...++.+-..+..|......||.++|+..-..-+|..+..+... ...|. +++ ...++-...
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~---~~~------~l~~~g~~l 205 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX---DHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC---CCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC---Chh------HHHHHHHHH
Confidence 4666777788999999999999875547899999998777666554333221 11232 233 236778888
Q ss_pred HhHhhhccCccchhhhh-cCCC-------CCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 456 SLIARLDDDVRTYKVEQ-ERGD-------APSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 456 ~~i~RL~NDI~S~~kE~-~rGd-------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
++..-+.||+..+.-.. .-|. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998886532 2333 12444333 3678899999999999988765
No 25
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=72.66 E-value=44 Score=34.09 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHH
Q 008427 377 GCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYS 455 (566)
Q Consensus 377 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~ 455 (566)
.....+.++...++.+-+.+..|.. +..||.++|+..-..-+|..+..+...-+ ++. .+++..+. ...+.+..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 3566778888899999999999865 34689999998777666665443322111 122 35555544 36788888
Q ss_pred HhHhhhccCccchhh
Q 008427 456 SLIARLDDDVRTYKV 470 (566)
Q Consensus 456 ~~i~RL~NDI~S~~k 470 (566)
++..-+.||+..+.-
T Consensus 213 G~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987743
No 26
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=71.12 E-value=41 Score=34.23 Aligned_cols=88 Identities=9% Similarity=0.089 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHH
Q 008427 377 GCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYS 455 (566)
Q Consensus 377 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~ 455 (566)
.....+.++...++.|-..+..|... ..||.++|+..-..-+|..+..++..-+ ++. .+++..+. ...+....
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVSN-HSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 35677888889999999999888643 3589999999887777766443322211 122 35555544 37788889
Q ss_pred HhHhhhccCccchhh
Q 008427 456 SLIARLDDDVRTYKV 470 (566)
Q Consensus 456 ~~i~RL~NDI~S~~k 470 (566)
+...-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 999999999988763
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=69.95 E-value=35 Score=34.62 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--cCCCCCcHHHHHhccchhHHHHHHHhHhhhccC
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG--LEDMAITKQALDWAISVPKIIRYSSLIARLDDD 464 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 464 (566)
..++.|-..+..|... .||.++|+..-..-+|..+..+. ..| ++.. .+++..+. ..++-+..++..-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASV-RLACLARPG-LPAEQFDR---LDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHH-HHHHTTSTT-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777653 78999999986555554433332 222 2232 35555544 36778888899999999
Q ss_pred ccchhhhh-----------cCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008427 465 VRTYKVEQ-----------ERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNIN 511 (566)
Q Consensus 465 I~S~~kE~-----------~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 511 (566)
+..+.-+. ..|.. +.+.+| ..|.|.+.+.+.++++...+.
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 98775421 22222 555554 478899999998888886654
No 28
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=69.05 E-value=32 Score=34.99 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
.+..+.++...++.+-..+..|.... ..|.++|+..-..-+|.....+...-++ +. .+++..+. ...+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 45667778889999999999997643 4599999998877666655443222111 12 35555544 377888899
Q ss_pred hHhhhccCccchhh
Q 008427 457 LIARLDDDVRTYKV 470 (566)
Q Consensus 457 ~i~RL~NDI~S~~k 470 (566)
+..-+.||+..+.-
T Consensus 212 ~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 212 IAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 99999999988753
No 29
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=68.96 E-value=32 Score=34.62 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccc
Q 008427 389 LVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRT 467 (566)
Q Consensus 389 ~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S 467 (566)
++.+-..+..|... .||.++|+..-..-+|..+..+...-+ ++.. .+++..+. ...+-+..++..-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~-~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGR-AEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 67777777777653 489999998855544444333221111 1221 15555544 36788888999999999988
Q ss_pred hhhhh-cCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008427 468 YKVEQ-ERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNIN 511 (566)
Q Consensus 468 ~~kE~-~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 511 (566)
+.-+. .-|. . .+.+.+| ..+.|.+.+++.++++.+.++
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 75431 2222 1 2555554 478899999999998887654
No 30
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=68.79 E-value=25 Score=35.41 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
..++.+-..+..|.. ..||.++|...-..-+|..+..+...-+ ++. .+++..+. ...+-+..++..-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLAN--QTEEVIGL---LTQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345677777777754 3689999998754444443332222111 122 35555544 367888888999999999
Q ss_pred cchhhh-----------hcCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVE-----------QERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 466 ~S~~kE-----------~~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877432 122222 444443 4789999999999999888765
No 31
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=68.26 E-value=15 Score=36.85 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHH--HhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccC
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEAL--VGLEDMAITKQALDWAISVPKIIRYSSLIARLDDD 464 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 464 (566)
..++.+-..+..|...+..||.++|+..-..-+|..+..+... ...|. +++ ....+-...+...-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~---~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGA---DRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC---CCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCC---CHH------HHHHHHHHHHHHHHHHHH
Confidence 4577888888889866778999999997655555443322211 11132 233 135677888889999999
Q ss_pred ccchhhhh-cCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 465 VRTYKVEQ-ERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 465 I~S~~kE~-~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
+..+.-+. .-|. . .+.+.+| ..+.|.+...+.++++.+.+..
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp CC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 1121 1 2555443 3577888889999988877654
No 32
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=66.55 E-value=95 Score=31.74 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
.+..+.++...++.+-..+..|... .-||.++|+..-..-+|..+..++..-++=-. .+++..+. ...+-+..++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGG-ADERTADT---LEKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 3566778888999999999999754 36899999988777666664433222111012 35555544 3678888899
Q ss_pred HhhhccCccchh
Q 008427 458 IARLDDDVRTYK 469 (566)
Q Consensus 458 i~RL~NDI~S~~ 469 (566)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999998774
No 33
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=64.46 E-value=27 Score=35.64 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
..++.+-..+..|... .+|.++|+..-..-+|..+......-+ ++. .+++..+. ..++-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577788888888765 689999999888777665443322111 111 35555544 377888899999999999
Q ss_pred cchhhhh-cCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVEQ-ERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 466 ~S~~kE~-~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..+.-+. .-|. . .+.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775321 1121 1 2555444 3688899999999999887654
No 34
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=62.30 E-value=25 Score=35.33 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--cCCCCCcHHHHHhccchhHHHHHHHhHhhhccC
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG--LEDMAITKQALDWAISVPKIIRYSSLIARLDDD 464 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 464 (566)
..++.+-..+..|. +..||.++|+..-..-+|..+..+. ..| ++.. .+++..+. ..++.+..+...-+.||
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~-~~~~~~~~---l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGE-KGRAMLPH---LDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTH-HHHTTHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 35677878888886 3578999999986555554433222 222 1221 12333332 36778888889999999
Q ss_pred ccchhhhh-cCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 465 VRTYKVEQ-ERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 465 I~S~~kE~-~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
+..+.-+. ..|. . .+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98775432 1121 1 2555554 3688888899999988877654
No 35
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=62.04 E-value=75 Score=32.24 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.++...++.+-+.+..|.. +.-||.++|+..-..-+|..+..++..-+ ++. .+++..+. ...+-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAG--APQSVIDR---TRDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 456677788888888888887754 34689999998766655655433322111 122 35555544 367778888
Q ss_pred hHhhhccCccchhh-----------hhcCCCCCchhhHHHhh
Q 008427 457 LIARLDDDVRTYKV-----------EQERGDAPSSVECYMQQ 487 (566)
Q Consensus 457 ~i~RL~NDI~S~~k-----------E~~rGd~~n~V~cyMke 487 (566)
+..-+.||+..+.- ....|.. +...+|.-+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 88899999877643 2334444 666666554
No 36
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=60.16 E-value=39 Score=34.70 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhcc
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFN----------AKY-VPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAI 446 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~----------~g~-vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~ 446 (566)
....+.++...++.|-..+..|.. .+. -||.++|+..-..-+|..+..++..-++=-. .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~-- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS-DDRGLAEA-- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-CCHHHHHH--
Confidence 456778888899999999999973 233 6799999998777666654433221111011 35555544
Q ss_pred chhHHHHHHHhHhhhccCccchhh
Q 008427 447 SVPKIIRYSSLIARLDDDVRTYKV 470 (566)
Q Consensus 447 ~~~~l~~~~~~i~RL~NDI~S~~k 470 (566)
...+....++..-+.||+..+.-
T Consensus 210 -l~~~g~~lG~aFQI~DD~lD~~g 232 (358)
T 4dhd_A 210 -AWNFGMAAGVAFQIIDDVLDIYG 232 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcC
Confidence 36788888999999999987743
No 37
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=58.80 E-value=41 Score=34.02 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 388 GLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG--LEDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 388 ~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
.++.|-..+..|. +..||.++|+..-..-+|..+..+. ..| ++.. .+++..+. ...+-+..+...-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASV-RMGALSTGQ-VKPEQLAK---LDAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775 3459999999986554554433222 222 2232 35555544 367888889999999999
Q ss_pred cchhhhh-----------cCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVEQ-----------ERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 466 ~S~~kE~-----------~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..+.-+. ..|. .+.+.+| ..+.|.+.+.+.++++.+.+..
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8774321 1222 2566554 4688999999999988887754
No 38
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=55.45 E-value=55 Score=33.34 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
.+..+.++...++.+-..+..|... ..+|.++|+..-..-+|..+..++..-+ ++. .+++..+. ...+-...+
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 227 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVL---AFEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHH---HHHHHHHHH
Confidence 4666777888888888888776532 3579999999866655554433322111 122 35555544 367788889
Q ss_pred hHhhhccCccchhh
Q 008427 457 LIARLDDDVRTYKV 470 (566)
Q Consensus 457 ~i~RL~NDI~S~~k 470 (566)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 99999999988754
No 39
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=54.32 E-value=53 Score=33.32 Aligned_cols=114 Identities=13% Similarity=0.073 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
..++.+-..+..|... .-||.++|...-..-+|..+..+...-+ ++. .+++..+. ..++-+..++..-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLAE--ASEGDIKK---LEGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777787643 3689999999854444443333222111 122 35555544 367888889999999999
Q ss_pred cchhhhh-cCC-----CC----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVEQ-ERG-----DA----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 466 ~S~~kE~-~rG-----d~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..+.-+. .-| |. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8774321 112 11 2444443 4689999999999999887754
No 40
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=52.25 E-value=61 Score=32.61 Aligned_cols=111 Identities=7% Similarity=-0.049 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCcc
Q 008427 388 GLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDVR 466 (566)
Q Consensus 388 ~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 466 (566)
.++.+-..+..|.. ..||.++|...-..-+|..+..+...-+ ++. .+++..+. ...+....+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSEH--VNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccC--CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45667666777753 4689999999855545544333322111 122 34444433 3677888888999999998
Q ss_pred chhhh-----------hcCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 467 TYKVE-----------QERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 467 S~~kE-----------~~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
.+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 77432 122222 455443 3678888889999988877653
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=51.32 E-value=35 Score=34.39 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHH-HhccchhHHHHHHHhHhhhccC
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQAL-DWAISVPKIIRYSSLIARLDDD 464 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~-e~~~~~~~l~~~~~~i~RL~ND 464 (566)
..++.+-..+..|. +..||.++|+..-..-+|..+..+...-+ ++. .+++.. +. ...+.+..+...-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45667777777775 46789999998865555554332222111 111 233433 43 36788888999999999
Q ss_pred ccchhhh-hcCCCCCchhhHHHhhcCC------CHHHHHHHHHHHHHHHHHHHHH
Q 008427 465 VRTYKVE-QERGDAPSSVECYMQQYGV------SEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 465 I~S~~kE-~~rGd~~n~V~cyMke~gv------S~EeA~~~i~~~i~~~wk~ln~ 512 (566)
+..+.-+ ..-|..... .+... ..+.|.++.+++++++.+.+..
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9887643 233443221 22223 3688888889988888877653
No 42
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=51.26 E-value=62 Score=32.25 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcC-CCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLE-DMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G-~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
..++.+-..+..|... .+|.++|+..-..-+|..+......-++= -. .+++..+. ..++-...++..-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777778887644 78999999987665555543332211110 11 34444443 467788889999999999
Q ss_pred cchhhhh-cCCC---------CCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVEQ-ERGD---------APSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 466 ~S~~kE~-~rGd---------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..+.-.. .-|. -.+...+| ..+.|.+.+++.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 1222 12555444 2577888899999999888765
No 43
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=50.39 E-value=13 Score=27.34 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHh
Q 008427 49 KRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRL 85 (566)
Q Consensus 49 ~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrL 85 (566)
+++.=|.+|||.-|..++ +.++++-++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~Te----nsfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITE----NSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCT----TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHH
Confidence 455667788888887777 899999999999865
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=50.06 E-value=1.1e+02 Score=30.31 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--cCCCCCcHHHHHhccchhHHHHHHHhHhhhcc
Q 008427 386 IKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG--LEDMAITKQALDWAISVPKIIRYSSLIARLDD 463 (566)
Q Consensus 386 w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~N 463 (566)
...++.+-..+..|.. ..||.++|...-..-+|..+..+.. .| ++. .+++..+. ..++.+..++..-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a~~-~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAALK-MGCEICE--LNNEESNQ---IYKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHH-HHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHHHH-HHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4456666666667753 4689999999865555554433322 22 122 35555444 3778888899999999
Q ss_pred Cccchhhh-hcCCCCC-------chhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 464 DVRTYKVE-QERGDAP-------SSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 464 DI~S~~kE-~~rGd~~-------n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
|+..+.-. ...|... +.+.++ ..+.|.++.+++++++.+.++.
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 99887643 2233321 333322 3678888888888888877653
No 45
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=50.04 E-value=1e+02 Score=30.92 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 387 KGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 387 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
..++.+-..+..|... ..||.++|+..-..-+|..+..+.....+ |.. .+++..+. ...+-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~-a~~~~~~~---l~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHE-VSEQIKSA---LRTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSS-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777543 37899999988655444433332222222 321 25555544 367888889999999999
Q ss_pred cchhhhh-cCCC-----C----CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVEQ-ERGD-----A----PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNIN 511 (566)
Q Consensus 466 ~S~~kE~-~rGd-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 511 (566)
..+.-+. .-|. . .+.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8775432 1121 1 2555443 478899999999998887654
No 46
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=47.97 E-value=22 Score=35.49 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhCC-CCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 388 GLVRAYFVEAKWFNAK-YVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 388 ~~~~a~l~EA~W~~~g-~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
.++.|-..+..|...+ ..+|.++|+..-..-+|..+..+...-+ ++. .+++..+. ..++-...++..-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566666666665322 2468999998854444443332221111 122 35555544 367888889999999999
Q ss_pred cchhhhhcCCCCCchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008427 466 RTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINE 512 (566)
Q Consensus 466 ~S~~kE~~rGd~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 512 (566)
..+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8886543 33555554 4678888888888888876644
No 47
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=44.33 E-value=2.5e+02 Score=28.83 Aligned_cols=78 Identities=8% Similarity=-0.089 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchh-HHHH--HHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhh
Q 008427 385 AIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYP-MLAV--EALVGLEDMAITKQALDWAISVPKIIRYSSLIARL 461 (566)
Q Consensus 385 ~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~-~~~~--~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL 461 (566)
...+++.+-+.+..|.... .||.++|+.+-..-+|.. +... +.-...| .+++..+. ...+-+..++..-+
T Consensus 183 ~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag---a~~~~~~~---l~~~G~~lG~AFQI 255 (380)
T 3lk5_A 183 MRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG---GSPQLIDA---LLHYGHDIGIAFQL 255 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT---CCHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC---CCHHHHHH---HHHHHHHHHHHHHH
Confidence 3356778888888887654 579999998766666654 2222 1112222 35555544 47788889999999
Q ss_pred ccCccchh
Q 008427 462 DDDVRTYK 469 (566)
Q Consensus 462 ~NDI~S~~ 469 (566)
.||+..+-
T Consensus 256 ~DDiLd~~ 263 (380)
T 3lk5_A 256 RDDLLGVF 263 (380)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99998774
No 48
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=43.23 E-value=86 Score=31.63 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHHHhhcccccchh-HHHHH--HHHhcCCCCCcHHHHHhccchhHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKW-FNAKYVPTFEEYMENSTMSSGYP-MLAVE--ALVGLEDMAITKQALDWAISVPKIIR 453 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W-~~~g~vPtleEYl~~~~~S~g~~-~~~~~--~~~~~G~~~l~~ev~e~~~~~~~l~~ 453 (566)
....+.++...++.|-..+..| ...+.-||.++|+..-..-+|.. +.... .-...|.. ++.. ...+..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~---~~~~-----l~~~g~ 202 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKT---PPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCC---CCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCC---HHHH-----HHHHHH
Confidence 4666778889999999999999 65435689999998877766655 33322 22222332 2222 367788
Q ss_pred HHHhHhhhccCccchh
Q 008427 454 YSSLIARLDDDVRTYK 469 (566)
Q Consensus 454 ~~~~i~RL~NDI~S~~ 469 (566)
..++..-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 8888999999998875
No 49
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=36.66 E-value=2.3e+02 Score=29.06 Aligned_cols=88 Identities=9% Similarity=-0.090 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHHHhhcccccchh-HHHH--HHHHhcCCCCCcHHHHHhccchhH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKY----VPTFEEYMENSTMSSGYP-MLAV--EALVGLEDMAITKQALDWAISVPK 450 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~----vPtleEYl~~~~~S~g~~-~~~~--~~~~~~G~~~l~~ev~e~~~~~~~ 450 (566)
.+..+.+.....+.|-+.+..|...+. .+|+++|+..-..-+|.. +... +..+..| . .+++..+. ...
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~-a~~~~~~~---l~~ 251 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-I-DGEKEHAN---AKK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-C-CCHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-C-CcHHHHHH---HHH
Confidence 456677778888999999999976544 389999999888766665 3222 2222223 1 35555544 377
Q ss_pred HHHHHHhHhhhccCccchhh
Q 008427 451 IIRYSSLIARLDDDVRTYKV 470 (566)
Q Consensus 451 l~~~~~~i~RL~NDI~S~~k 470 (566)
+....++..-+.||+..+.-
T Consensus 252 ~g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 88889999999999987753
No 50
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=34.00 E-value=2.1e+02 Score=29.27 Aligned_cols=88 Identities=8% Similarity=-0.072 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHHHhhcccccchh-HHHH--HHHHhcCCCCCcHHHHHhccchhH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKY----VPTFEEYMENSTMSSGYP-MLAV--EALVGLEDMAITKQALDWAISVPK 450 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~----vPtleEYl~~~~~S~g~~-~~~~--~~~~~~G~~~l~~ev~e~~~~~~~ 450 (566)
....+.+.....+.|-+.+..|...+. .+|+++|+..-..-+|.. +... +..+..|. .+++..+. ...
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~--~~~~~~~~---l~~ 244 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI--DSKEEHEN---AKA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC--CCHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--ccHHHHHH---HHH
Confidence 456677778888999999999976543 589999999887766665 2222 22222242 24555544 377
Q ss_pred HHHHHHhHhhhccCccchhh
Q 008427 451 IIRYSSLIARLDDDVRTYKV 470 (566)
Q Consensus 451 l~~~~~~i~RL~NDI~S~~k 470 (566)
+....++..-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88889999999999988754
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=32.01 E-value=77 Score=32.16 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAK--YVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRY 454 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g--~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~ 454 (566)
....+.+....++.|-..+..|.... ..||.++|+..-..-+|..+..+...-++ +. .+++ . .....+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 45567778888999999999998765 57899999998877666554433222111 11 2222 2 334778899
Q ss_pred HHhHhhhccCccchhh
Q 008427 455 SSLIARLDDDVRTYKV 470 (566)
Q Consensus 455 ~~~i~RL~NDI~S~~k 470 (566)
.++..-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987754
No 52
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=31.18 E-value=1e+02 Score=30.94 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHh
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSL 457 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~ 457 (566)
....+.++...++.|-..+..|... ..||.++|+..-..-+|..+..+...-++=-. .+++..+. ..++-...++
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~ 205 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYH---IKQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 5667778888999999999998653 35899999998887666664433322221112 35555544 3778888999
Q ss_pred HhhhccCccchhh
Q 008427 458 IARLDDDVRTYKV 470 (566)
Q Consensus 458 i~RL~NDI~S~~k 470 (566)
..-+.||+..+.-
T Consensus 206 afQi~DD~ld~~~ 218 (325)
T 3aqb_B 206 SYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 9999999987753
No 53
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=29.95 E-value=1.8e+02 Score=29.92 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCH-HHHHhhcccccchh-HHH--HHHHHhcCCCCCcHHH--HHhccchhHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTF-EEYMENSTMSSGYP-MLA--VEALVGLEDMAITKQA--LDWAISVPKI 451 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtl-eEYl~~~~~S~g~~-~~~--~~~~~~~G~~~l~~ev--~e~~~~~~~l 451 (566)
.+..+.++...++.|-+.+..|...+..+++ ++|+.+-..-+|.. +.. .+..+..|.. ++. . .....+
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~---~~~~~~---~~l~~~ 242 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQ---VSSAQL---NLIEAI 242 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCC---CCCSST---TTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCC---hhHHHH---HHHHHH
Confidence 3566777888899999999888776634455 99998876666654 222 2222223332 222 2 234677
Q ss_pred HHHHHhHhhhccCccchh
Q 008427 452 IRYSSLIARLDDDVRTYK 469 (566)
Q Consensus 452 ~~~~~~i~RL~NDI~S~~ 469 (566)
....++..-+.||+..+.
T Consensus 243 g~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 243 LYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888889999999998875
No 54
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=29.77 E-value=52 Score=32.48 Aligned_cols=70 Identities=7% Similarity=0.012 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHHhHhhhccCc
Q 008427 389 LVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSSLIARLDDDV 465 (566)
Q Consensus 389 ~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 465 (566)
++.+-..+..|..+ .||.++|...-..-+|..+..+...-+ ++. .+++..+. ..++-+..++..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGailag--a~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILGG--AAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 45666666666543 799999998655555544433322211 122 35555544 377888889999999997
No 55
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=29.13 E-value=20 Score=41.00 Aligned_cols=41 Identities=29% Similarity=0.567 Sum_probs=15.7
Q ss_pred CCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHh
Q 008427 23 NYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLM 63 (566)
Q Consensus 23 ~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 63 (566)
+|||++|++.++.....+......+.++++.|+++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 68999999999975322211123456788999999999995
No 56
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=29.03 E-value=4.4e+02 Score=26.20 Aligned_cols=83 Identities=10% Similarity=-0.045 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.++...++.|-..+..|..+ .-||.++|+..-..-+|..+..++..-+ ++. .+ . .....+.+..+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~---~---~~l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILEDKTAHFIEASLKSMAILLN--KD---A---KIYADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SC---H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcC--CC---H---HHHHHHHHHHH
Confidence 4566778888899999999999753 4689999998766666655443322111 122 23 1 22366778888
Q ss_pred hHhhhccCccchh
Q 008427 457 LIARLDDDVRTYK 469 (566)
Q Consensus 457 ~i~RL~NDI~S~~ 469 (566)
+..-+.||+..+.
T Consensus 194 ~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 194 MAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccc
Confidence 8899999987764
No 57
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=28.45 E-value=1.4e+02 Score=29.79 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhc-CCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGL-EDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~-G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.+.+.+++.+-..+..|......||.++|+..-..-+|..+..+....++ +. .+ +....+-...+
T Consensus 112 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~--~~-------~~l~~~g~~lG 182 (301)
T 2q80_A 112 AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD--YK-------EDLKPLLNTLG 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CC-------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC--Ch-------HHHHHHHHHHH
Confidence 4666788889999999999999876668999999998887666554433222211 22 12 12467788888
Q ss_pred hHhhhccCccchhh
Q 008427 457 LIARLDDDVRTYKV 470 (566)
Q Consensus 457 ~i~RL~NDI~S~~k 470 (566)
+..-+.||+..+.-
T Consensus 183 ~aFQi~DD~ld~~~ 196 (301)
T 2q80_A 183 LFFQIRDDYANLHS 196 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhcC
Confidence 99999999987743
No 58
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=28.24 E-value=1.4e+02 Score=29.66 Aligned_cols=83 Identities=16% Similarity=0.001 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHH--HhcCCCCCcHHHHHhccchhHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEAL--VGLEDMAITKQALDWAISVPKIIRYS 455 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~~l~~ev~e~~~~~~~l~~~~ 455 (566)
....+.++...++.+-..+..|.... ||.++|+..-..-+|..+..+... ...|.. + + . ...+-...
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~-~---~---l~~~g~~l 196 (299)
T 1v4e_A 128 LRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGEL--G-E---D---LYNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC--C-H---H---HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCC--H-H---H---HHHHHHHH
Confidence 56677888899999999999997654 999999988777666654333221 112333 2 2 2 25677788
Q ss_pred HhHhhhccCccchhhh
Q 008427 456 SLIARLDDDVRTYKVE 471 (566)
Q Consensus 456 ~~i~RL~NDI~S~~kE 471 (566)
++..-+.||+..+.-+
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 8888889998877544
No 59
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=25.19 E-value=2e+02 Score=29.16 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCCHHHHHhhcccccchh-HHHH--HHHHhcCCCCCcH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWF-----------NAKY----VPTFEEYMENSTMSSGYP-MLAV--EALVGLEDMAITK 439 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~-----------~~g~----vPtleEYl~~~~~S~g~~-~~~~--~~~~~~G~~~l~~ 439 (566)
....+.++...++.|-..+..|. ..|. .+|.++|+..-..-+|.. +... +..+..|. .++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~--~~~ 229 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEA--AAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC--GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCC--CCH
Confidence 46667778888999999999987 3223 489999999888766655 3222 22222231 233
Q ss_pred HHHHhccchhHHHHHHHhHhhhccCccchhh
Q 008427 440 QALDWAISVPKIIRYSSLIARLDDDVRTYKV 470 (566)
Q Consensus 440 ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~k 470 (566)
+..+. ...+....++..-+.||+..+.-
T Consensus 230 ~~~~~---l~~~g~~lG~aFQi~DD~lD~~~ 257 (362)
T 1yhl_A 230 VEMNL---VERVAHLIGEYFQVQDDVMDCFT 257 (362)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence 33333 36778888999999999987753
No 60
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=24.71 E-value=3.1e+02 Score=27.00 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-cCCCCCcHHHHHhccchhHHHHHHH
Q 008427 378 CMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVG-LEDMAITKQALDWAISVPKIIRYSS 456 (566)
Q Consensus 378 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~-~G~~~l~~ev~e~~~~~~~l~~~~~ 456 (566)
....+.++...++.|-..+..| .++|++.-..-+|..+..++..-+ ++ . +++..+. ...+-...+
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la-~--~~~~~~~---l~~~g~~lG 201 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS-K--HYNTKQQ---MLDVGKYLG 201 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT-T--CGGGHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc-C--CHHHHHH---HHHHHHHHH
Confidence 4566677777777777766554 688988776666655433322111 12 2 3333333 367778888
Q ss_pred hHhhhccCccchhhhh----cCCCCCchhhHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH
Q 008427 457 LIARLDDDVRTYKVEQ----ERGDAPSSVECYMQQYGVSEEEA-CNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 531 (566)
Q Consensus 457 ~i~RL~NDI~S~~kE~----~rGd~~n~V~cyMke~gvS~EeA-~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~ 531 (566)
...-+.||+..+.-+. ..|. .+...+| . ..+.++| ...+.+.++++.+.+.. + +.|.+.+....++
T Consensus 202 ~aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~--l---p~~~~~~~~L~~l 272 (289)
T 2azj_A 202 IIYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN--I---PFQSKYLSEIRSL 272 (289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT--S---CCCGGGHHHHHTH
T ss_pred HHHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh--C---CCCcHHHHHHHHH
Confidence 8999999998775421 1222 4666666 3 3346777 45577777777766543 2 1223455555555
Q ss_pred hh
Q 008427 532 AR 533 (566)
Q Consensus 532 aR 533 (566)
++
T Consensus 273 ~~ 274 (289)
T 2azj_A 273 PE 274 (289)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.37 E-value=78 Score=24.94 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008427 488 YGVSEEEACNKIKEMVEIEWMNI 510 (566)
Q Consensus 488 ~gvS~EeA~~~i~~~i~~~wk~l 510 (566)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
Done!