BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008429
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYG 168
+D++ I ID D + ++ VN+ Q+ +A P L + V+ +TVGG I
Sbjct: 92 IDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAI-ACD 150
Query: 169 IEGSSH-IYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIK 227
I G +H G F + V + +++ ADG++ T E +LF+A G G+++ A I+
Sbjct: 151 IHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIE 210
Query: 228 LIPIKEYMKLTYKPVASNLREIAQAYADSFAPR 260
+ P + V ++L E ++D R
Sbjct: 211 MTPTSTAYFIADGDVTASLDETIALHSDGSEAR 243
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYG 168
+D+ A I ID + V+ V++ Q+ +A P L + V+ +TVGG I G
Sbjct: 14 IDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAI-GCD 72
Query: 169 IEGSSH-IYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIK 227
I G +H G F + V + E++ A+G+V T DLF+A G G+++ A I+
Sbjct: 73 IHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIE 132
Query: 228 LIPIKEYMKLTYKPVASNLREIAQAYADS 256
+ P + + V +L E ++D
Sbjct: 133 MTPTETAYFIADGDVTGSLDETIAFHSDG 161
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYG 168
+D+ A I ID + V+ V++ Q+ +A P L + V+ +TVGG I G
Sbjct: 79 IDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAI-GCD 137
Query: 169 IEGSSH-IYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIK 227
I G +H G F + V + E++ A+G+V T DLF+A G G+++ A I+
Sbjct: 138 IHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIE 197
Query: 228 LIPIKEYMKLTYKPVASNLREIAQAYADS 256
+ P + + V +L E ++D
Sbjct: 198 MTPTETAYFIADGDVTGSLDETIAFHSDG 226
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 107 FEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDL---TVGGL 163
+D S IL +D++ + A VE + ++ R E D L TVGG
Sbjct: 256 ISLDTSQMNRILWVDENNLTAHVEAGITGQELERQL--KESGYCTGHEPDSLEFSTVGGW 313
Query: 164 INGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYK---DLFYAIPWSQGTLGL 220
I+ +IYG D VV ++V G + ++ + D+ + I S+GTLG+
Sbjct: 314 ISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGV 373
Query: 221 LVSAEIKLIPIKEYMKLTYKPVA--------SNLREIAQ 251
+ A IK+ P EY K Y VA + LREIA+
Sbjct: 374 ITEATIKIRPTPEYQK--YGSVAFPNFEQGVACLREIAK 410
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 107 FEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDL---TVGGL 163
+D S IL +D++ + A VE + ++ R E D L TVGG
Sbjct: 256 ISLDTSQMNRILWVDENNLTAHVEAGITGQELERQL--KESGYCTGHEPDSLEFSTVGGW 313
Query: 164 INGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYK---DLFYAIPWSQGTLGL 220
I+ +IYG D VV ++V G + ++ + D+ + I S+GTLG+
Sbjct: 314 ISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGV 373
Query: 221 LVSAEIKLIPIKEYMKLTYKPVA--------SNLREIAQ 251
+ A IK+ P EY K Y VA + LREIA+
Sbjct: 374 ITEATIKIRPTPEYQK--YGSVAFPNFEQGVACLREIAK 410
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 107 FEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDL---TVGGL 163
+D S IL +D++ + A VE + ++ R E D L TVGG
Sbjct: 256 ISLDTSQMNRILWVDENNLTAHVEAGITGQELERQL--KESGYCTGHEPDSLEFSTVGGW 313
Query: 164 INGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYK---DLFYAIPWSQGTLGL 220
I+ +IYG D VV ++V G + ++ + D+ + I S+GTLG+
Sbjct: 314 ISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGV 373
Query: 221 LVSAEIKLIPIKEYMKLTYKPVA--------SNLREIAQ 251
+ A IK+ P EY K Y VA + LREIA+
Sbjct: 374 ITEATIKIRPTPEYQK--YGSVAFPNFEQGVACLREIAK 410
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 106 HFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQ------------ISRATCPMNLSLAVVA 153
H V L +++ + IA VEP +G IS TCP
Sbjct: 83 HLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCP--------- 133
Query: 154 ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPW 213
+ + G G SSH++GL D+VV +VLADG++V A+ E DLF+ I
Sbjct: 134 ---GVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASA-TENADLFWGIKG 189
Query: 214 SQGTLGLLVSAEIKLIPIKEYM-----KLTYKPVASNLR--EIAQAYADSFAPRDGD--- 263
+ G++ ++ P + + L +K S L+ E + YA APR+ +
Sbjct: 190 AGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRI 249
Query: 264 QDNQAKVPDFVEGMIYTSTE 283
D A P +EG+ Y + E
Sbjct: 250 GDYGAGNPG-IEGLYYGTPE 268
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 159 TVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVV----RATKDNEYKDLFYAIPWS 214
T+GG ++ ++ YGL D + E+VLADG+V + KDN DL +
Sbjct: 151 TIGGNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGA 210
Query: 215 QGTLGLLVSAEIKLIP 230
+GTLG++ +A +KL P
Sbjct: 211 EGTLGIITAATLKLFP 226
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ G+ G + YG + V ++V +G VV + + E +LF+++ G
Sbjct: 166 LTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCS-EIENSELFFSVLGGLGQ 224
Query: 218 LGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGM 277
G++ A + L P + ++ + V + E Q A Q N++ D+VEG
Sbjct: 225 FGIITRARVLLQPAPDXVRWI-RVVYTEFDEFTQD-----AEWLVSQKNESSF-DYVEGF 277
Query: 278 IYTS 281
++ +
Sbjct: 278 VFVN 281
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYG 168
+ L+ +++D+D +V V +++R L+L +A L ++V G + G
Sbjct: 65 LSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSV-ATG 123
Query: 169 IEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKL 228
GS G + V E+V ADG V + +E F S G LG++ S + L
Sbjct: 124 THGSGVGNGSLASVVREVELVTADGSTVVIARGDER---FGGAVTSLGALGVVTSLTLDL 180
Query: 229 IPIKE 233
P E
Sbjct: 181 EPAYE 185
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ GI G + +G V+ +++ G++V +K DLF A+ G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLN-ADLFDAVLGGLGQ 213
Query: 218 LGLLVSAEIKLIPI---KEYMKLTYKPVASNLREIAQAYADS---FAPRDGDQDNQAKVP 271
G++ A I + P +++L Y + A AD APR G
Sbjct: 214 FGVITRARIAVEPAPARARWVRLVYT-------DFAAFSADQERLTAPRPGGGGASFGPM 266
Query: 272 DFVEGMIYTS 281
+VEG ++ +
Sbjct: 267 SYVEGSVFVN 276
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ GI G + +G V+ +++ G++V +K DLF A+ G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLN-ADLFDAVLGGLGQ 213
Query: 218 LGLLVSAEIKLIPI---KEYMKLTYKPVASNLREIAQAYADS---FAPRDGDQDNQAKVP 271
G++ A I + P +++L Y + A AD APR G
Sbjct: 214 FGVITRARIAVEPAPARARWVRLVYT-------DFAAFSADQERLTAPRPGGGGASFGPM 266
Query: 272 DFVEGMIYTS 281
+VEG ++ +
Sbjct: 267 SYVEGSVFVN 276
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ GI G + +G V+ +++ G++V +K DLF A+ G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLN-ADLFDAVLGGLGQ 213
Query: 218 LGLLVSAEIKLIPI---KEYMKLTYKPVASNLREIAQAYADS---FAPRDGDQDNQAKVP 271
G++ A I + P +++L Y + A AD APR G
Sbjct: 214 FGVITRARIAVEPAPARARWVRLVYT-------DFAAFSADQERLTAPRPGGGGASFGPM 266
Query: 272 DFVEGMIYTS 281
+VEG ++ +
Sbjct: 267 SYVEGSVFVN 276
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ GI G + +G V+ +++ G++V +K DLF A+ G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLN-ADLFDAVLGGLGQ 213
Query: 218 LGLLVSAEIKLIPI---KEYMKLTYKPVASNLREIAQAYADS---FAPRDGDQDNQAKVP 271
G++ A I + P +++L Y + A AD APR G
Sbjct: 214 FGVITRARIAVEPAPARARWVRLVYT-------DFAAFSADQERLTAPRPGGGGASFGPM 266
Query: 272 DFVEGMIYTS 281
+VEG ++ +
Sbjct: 267 SYVEGSVFVN 276
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ GI G + +G V+ +++ G++V +K DLF A+ G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLN-ADLFDAVLGGLGQ 213
Query: 218 LGLLVSAEIKLIPI---KEYMKLTYKPVASNLREIAQAYADS---FAPRDGDQDNQAKVP 271
G++ A I + P +++L Y + A AD APR G
Sbjct: 214 FGVITRARIAVEPAPARARWVRLVYT-------DFAAFSADQERLTAPRPGGGGASFGPM 266
Query: 272 DFVEGMIYTS 281
+VEG ++ +
Sbjct: 267 SYVEGSVFVN 276
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 158 LTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217
LTVGG ++ GI G + +G V+ +++ G++V +K DLF A+ G
Sbjct: 173 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLN-ADLFDAVLGGLGQ 231
Query: 218 LGLLVSAEIKLIPI---KEYMKLTYKPVASNLREIAQAYADS---FAPRDGDQDNQAKVP 271
G++ A I + P +++ Y + A AD APR G
Sbjct: 232 FGVITRARIAVEPAPARARWVRFVYT-------DFAAFSADQERLTAPRPGGGGASFGPM 284
Query: 272 DFVEGMIYTS 281
+VEG ++ +
Sbjct: 285 SYVEGSVFVN 294
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 176 YGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYM 235
YGL SD ++ +V A G V+ + D+E +LF+A+ + G++ E++L + M
Sbjct: 151 YGLASDNILGATLVTATGDVIYCS-DDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKM 209
Query: 236 K---LTYKPVASNLREIAQAYADSF 257
+T+ P S L + + D+
Sbjct: 210 LAGFITWAPSVSELAGLLTSLLDAL 234
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 84 VCTARKP--WIAVGMRNVDYKRARHFE-----VDLSAFRNILDIDKDRMIAKVEPLVNMG 136
+C K W RN Y A + +DL I+ ID + A VEP V G
Sbjct: 75 ICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFG 134
Query: 137 Q----ISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLAD 192
Q I P+ LS + + + + G G YG E+VLA+
Sbjct: 135 QMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT----PYGEHFMMQCGMEVVLAN 190
Query: 193 GQVVRA 198
G V R
Sbjct: 191 GDVYRT 196
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 84 VCTARKP--WIAVGMRNVDYKRARHFE-----VDLSAFRNILDIDKDRMIAKVEPLVNMG 136
+C K W RN Y A + +DL I+ ID + A VEP V G
Sbjct: 76 ICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFG 135
Query: 137 Q----ISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLAD 192
Q I P+ LS + + + + G G YG E+VLA+
Sbjct: 136 QMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT----PYGEHFMMQCGMEVVLAN 191
Query: 193 GQVVRA 198
G V R
Sbjct: 192 GDVYRT 197
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPI 231
++H +GL D ++ +VLAD +V ++ E DLF+A+ G ++ E
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSE-TENADLFWALRGGGGGFAIVSEFEFNTFEA 211
Query: 232 KEYMKLTYK 240
E + TY+
Sbjct: 212 PEIIT-TYQ 219
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPI 231
++H +GL D ++ +VLAD +V ++ E DLF+A+ G ++ E
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSE-TENADLFWALRGGGGGFAIVSEFEFNTFEA 211
Query: 232 KEYMKLTYK 240
E + TY+
Sbjct: 212 PEIIT-TYQ 219
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 176 YGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQG-TLGLLVSAEIKLIPI 231
YGL +D ++ +V DG+V+ E DLF+AI G G++ + +IKL+ +
Sbjct: 170 YGLAADNIIDAHLVNVDGKVLDRKSMGE--DLFWAIRGGGGENFGIIAAWKIKLVAV 224
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 57 SKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNL------------- 103
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 104 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGM 160
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 161 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 218
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 219 VPE--KVTVFRVTKNV 232
>pdb|2XRF|A Chain A, Crystal Structure Of Human Uridine Phosphorylase 2
pdb|2XRF|B Chain B, Crystal Structure Of Human Uridine Phosphorylase 2
pdb|2XRF|C Chain C, Crystal Structure Of Human Uridine Phosphorylase 2
Length = 303
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 401 LYKVGDALEWQHREVYP-LWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVG 459
+YK G L H P + + H L KL HH R D + ++ T G
Sbjct: 82 MYKTGPVLAISHGMGIPSISIMLHELIKLL------------HHARCCDVTIIRIGTSGG 129
Query: 460 VYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNF 506
+ APG ++ ++ + + EQ +++N + ELSE+ F
Sbjct: 130 IGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELF 176
>pdb|3P0E|A Chain A, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|B Chain B, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|C Chain C, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|D Chain D, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|E Chain E, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|F Chain F, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0F|A Chain A, Structure Of Hupp2 In An Inactive Conformation With Bound
5- Benzylacyclouridine
Length = 297
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 401 LYKVGDALEWQHREVYP-LWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVG 459
+YK G L H P + + H L KL HH R D + ++ T G
Sbjct: 86 MYKTGPVLAISHGMGIPSISIMLHELIKLL------------HHARCCDVTIIRIGTSGG 133
Query: 460 VYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNF 506
+ APG ++ ++ + + EQ +++N + ELSE+ F
Sbjct: 134 IGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELF 180
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 54 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL------------- 100
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 101 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGM 157
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 158 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 215
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 216 VPE--KVTVFRVTKNV 229
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 60 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL------------- 106
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 107 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGM 163
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 164 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 221
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 222 VPE--KVTVFRVTKNV 235
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 60 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL------------- 106
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 107 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGM 163
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 164 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 221
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 222 VPE--KVTVFRVTKNV 235
>pdb|3IE9|A Chain A, Structure Of Oxidized M98l Mutant Of Amicyanin
pdb|3IEA|A Chain A, Structure Of Reduced M98l Mutant Of Amicyanin
Length = 105
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 403 KVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVY- 461
KVGD + W +RE P + + + V E + + + +Y+ +T+ G Y
Sbjct: 38 KVGDTVTWINREAMP--------HNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYD 89
Query: 462 --YAPGPILRGEV 472
P P LRG+V
Sbjct: 90 YHCTPHPFLRGKV 102
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 54 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL------------- 100
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 101 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGM 157
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 158 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 215
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 216 VPE--KVTVFRVTKNV 229
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 54 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL------------- 100
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 101 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGM 157
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 158 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 215
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 216 VPE--KVTVFRVTKNV 229
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 59 QKEHDENVKKVVK------RLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112
KE N + ++ RL+ S +GL T+ P+I + + N+
Sbjct: 79 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL------------- 125
Query: 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEG 171
N + ID + A VE +G++ A + L A + GG I+G G
Sbjct: 126 ---NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGM 182
Query: 172 SSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTL-GLLVSAEIKLIP 230
S YGL +D VV ++ A+G ++ E D+F+AI G + G + + +IKL+P
Sbjct: 183 MSRKYGLAADNVVDAILIDANGAILDRQAMGE--DVFWAIRGGGGGVWGAIYAWKIKLLP 240
Query: 231 IKEYMKLTYKPVASNL 246
+ E K+T V N+
Sbjct: 241 VPE--KVTVFRVTKNV 254
>pdb|2QDV|A Chain A, Structure Of The Cu(Ii) Form Of The M51a Mutant Of
Amicyanin
pdb|2QDW|A Chain A, Structure Of Cu(I) Form Of The M51a Mutant Of Amicyanin
Length = 106
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 403 KVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVY- 461
KVGD + W +RE PH ++ + V E + + + +Y+ +T+ G Y
Sbjct: 39 KVGDTVTWINREA-----APHNVH---FVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYD 90
Query: 462 --YAPGPILRGEV 472
P P +RG+V
Sbjct: 91 YHCTPHPFMRGKV 103
>pdb|1MDA|A Chain A, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
pdb|1MDA|B Chain B, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
Length = 103
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 403 KVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVY- 461
KVGD + W +RE P + + + V E + + + +Y+ +T+ G Y
Sbjct: 36 KVGDTVTWINREAMP--------HNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYD 87
Query: 462 --YAPGPILRGEV 472
P P +RG+V
Sbjct: 88 YHCTPHPFMRGKV 100
>pdb|2MTA|A Chain A, Crystal Structure Of A Ternary Electron Transfer Complex
Between Methylamine Dehydrogenase, Amicyanin And A
C-Type Cytochrome
pdb|1BXA|A Chain A, Amicyanin Reduced, Ph 4.4, 1.3 Angstroms
pdb|2RAC|A Chain A, Amicyanin Reduced, Ph 7.7, 1.3 Angstroms
pdb|1MG2|C Chain C, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|G Chain G, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|K Chain K, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|O Chain O, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|C Chain C, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|G Chain G, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|K Chain K, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|O Chain O, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1T5K|A Chain A, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|1T5K|B Chain B, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|1T5K|C Chain C, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|1T5K|D Chain D, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|2GC4|C Chain C, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|G Chain G, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|K Chain K, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|O Chain O, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC7|C Chain C, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|G Chain G, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|K Chain K, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|O Chain O, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2J55|A Chain A, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J55|B Chain B, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J56|A Chain A, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J56|B Chain B, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J57|A Chain A, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|B Chain B, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|C Chain C, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|D Chain D, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|1AAC|A Chain A, Amicyanin Oxidized, 1.31 Angstroms
pdb|1AAJ|A Chain A, Crystal Structure Analysis Of Amicyanin And Apoamicyanin
From Paracoccus Denitrificans At 2.0 Angstroms And 1.8
Angstroms Resolution
pdb|1AAN|A Chain A, Crystal Structure Analysis Of Amicyanin And Apoamicyanin
From Paracoccus Denitrificans At 2.0 Angstroms And 1.8
Angstroms Resolution
pdb|2OV0|A Chain A, Structure Of The Blue Copper Protein Amicyanin To 0.75 A
Resolution
pdb|3L45|A Chain A, A Joint Neutron And X-Ray Structure Of Oxidized Amicyanin
Length = 105
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 403 KVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVY- 461
KVGD + W +RE P + + + V E + + + +Y+ +T+ G Y
Sbjct: 38 KVGDTVTWINREAMP--------HNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYD 89
Query: 462 --YAPGPILRGEV 472
P P +RG+V
Sbjct: 90 YHCTPHPFMRGKV 102
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 176 YGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQG-TLGLLVSAEIKLIPIKEY 234
YG +D V+ ++V A G+++ E D F+AI G + G++ S ++KL+P+
Sbjct: 173 YGTAADNVIDAKVVDAQGRLLDRKAMGE--DHFWAIRGGGGESFGIVASWQVKLLPVPP- 229
Query: 235 MKLTYKPVASNLREIA 250
K+T V ++E A
Sbjct: 230 -KVTVFQVHKGIKEGA 244
>pdb|2IDQ|A Chain A, Structure Of M98a Mutant Of Amicyanin, Cu(Ii)
pdb|2IDS|A Chain A, Structure Of M98a Mutant Of Amicyanin, Cu(I)
Length = 105
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 403 KVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVY- 461
KVGD + W +RE P + + + V E + + + +Y+ +T+ G Y
Sbjct: 38 KVGDTVTWINREAMP--------HNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYD 89
Query: 462 --YAPGPILRGEV 472
P P RG+V
Sbjct: 90 YHCTPHPFARGKV 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,790,357
Number of Sequences: 62578
Number of extensions: 781528
Number of successful extensions: 1886
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 48
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)