Query 008429
Match_columns 565
No_of_seqs 454 out of 2379
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 12:02:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1262 FAD-binding protein DI 100.0 6E-112 1E-116 853.3 24.6 532 9-553 8-543 (543)
2 TIGR01678 FAD_lactone_ox sugar 100.0 2.2E-41 4.7E-46 365.4 36.0 414 43-530 2-437 (438)
3 TIGR01679 bact_FAD_ox FAD-link 100.0 2.8E-41 6E-46 363.7 33.5 402 46-534 2-415 (419)
4 TIGR01676 GLDHase galactonolac 100.0 3.5E-40 7.6E-45 359.0 35.5 444 43-534 49-537 (541)
5 PLN02465 L-galactono-1,4-lacto 100.0 1.4E-37 3.1E-42 341.1 35.4 443 43-534 84-567 (573)
6 TIGR01677 pln_FAD_oxido plant- 100.0 4.3E-37 9.3E-42 338.8 37.1 452 36-536 12-508 (557)
7 PLN02441 cytokinin dehydrogena 100.0 2.7E-34 5.8E-39 313.2 34.4 431 45-528 54-511 (525)
8 PLN02805 D-lactate dehydrogena 100.0 8.3E-33 1.8E-37 305.4 30.6 381 59-528 139-543 (555)
9 PRK11230 glycolate oxidase sub 100.0 3.2E-31 7E-36 290.9 28.5 187 59-257 61-255 (499)
10 COG0277 GlcD FAD/FMN-containin 100.0 1.8E-30 4E-35 282.7 27.1 389 58-530 36-452 (459)
11 TIGR00387 glcD glycolate oxida 100.0 2.8E-30 6.1E-35 278.3 27.7 187 59-257 3-198 (413)
12 KOG4730 D-arabinono-1, 4-lacto 100.0 1.1E-26 2.4E-31 240.6 25.6 435 56-532 52-507 (518)
13 PRK11282 glcE glycolate oxidas 99.9 3.1E-26 6.6E-31 240.1 18.9 182 62-257 3-193 (352)
14 KOG1231 Proteins containing th 99.9 2.2E-23 4.7E-28 216.3 17.1 163 59-233 69-240 (505)
15 KOG1232 Proteins containing th 99.8 1.1E-20 2.3E-25 191.9 9.8 190 59-256 95-289 (511)
16 PRK11183 D-lactate dehydrogena 99.8 5.4E-20 1.2E-24 198.6 14.8 205 59-278 44-304 (564)
17 PF01565 FAD_binding_4: FAD bi 99.8 4.1E-20 8.9E-25 169.4 11.5 131 60-199 7-139 (139)
18 PRK13905 murB UDP-N-acetylenol 99.7 7.4E-18 1.6E-22 174.2 13.0 150 59-232 36-193 (298)
19 KOG1233 Alkyl-dihydroxyacetone 99.7 6.9E-17 1.5E-21 164.5 11.7 187 59-257 166-364 (613)
20 PRK12436 UDP-N-acetylenolpyruv 99.6 1.7E-15 3.6E-20 156.9 13.4 146 59-231 42-197 (305)
21 PRK14652 UDP-N-acetylenolpyruv 99.6 2.7E-15 5.8E-20 155.1 13.9 147 59-232 41-196 (302)
22 PRK13906 murB UDP-N-acetylenol 99.6 3.4E-15 7.5E-20 154.6 13.3 145 59-230 42-196 (307)
23 PRK13903 murB UDP-N-acetylenol 99.6 7.7E-15 1.7E-19 154.5 13.7 147 59-232 38-197 (363)
24 TIGR00179 murB UDP-N-acetyleno 99.6 9.8E-15 2.1E-19 149.8 13.3 147 59-231 18-175 (284)
25 PRK14649 UDP-N-acetylenolpyruv 99.5 1.6E-13 3.5E-18 141.4 13.5 151 59-232 26-193 (295)
26 PRK14653 UDP-N-acetylenolpyruv 99.5 6.9E-13 1.5E-17 136.6 14.0 144 59-232 39-194 (297)
27 PRK14650 UDP-N-acetylenolpyruv 99.4 3.2E-12 7E-17 131.4 13.3 146 59-232 38-195 (302)
28 COG0812 MurB UDP-N-acetylmuram 99.4 4.3E-12 9.3E-17 128.7 13.1 147 59-231 26-183 (291)
29 PRK00046 murB UDP-N-acetylenol 99.4 4E-12 8.7E-17 132.5 12.9 146 59-231 26-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.3 2.6E-11 5.6E-16 126.5 12.9 148 59-232 35-237 (354)
31 PF04030 ALO: D-arabinono-1,4- 99.2 4.4E-11 9.4E-16 121.4 7.8 126 392-534 125-257 (259)
32 PRK14651 UDP-N-acetylenolpyruv 99.1 7.5E-10 1.6E-14 112.5 11.6 121 90-231 39-170 (273)
33 PLN00107 FAD-dependent oxidore 98.8 4.1E-08 8.9E-13 97.7 10.8 127 396-537 66-203 (257)
34 PRK13904 murB UDP-N-acetylenol 98.7 4.5E-08 9.7E-13 98.7 10.0 120 90-232 33-160 (257)
35 PF09265 Cytokin-bind: Cytokin 96.3 0.018 3.8E-07 59.1 9.0 119 395-528 144-274 (281)
36 PRK09799 putative oxidoreducta 92.3 0.17 3.8E-06 51.5 4.7 142 62-227 7-155 (258)
37 PF00941 FAD_binding_5: FAD bi 90.8 0.084 1.8E-06 50.3 0.5 63 104-167 43-115 (171)
38 TIGR03312 Se_sel_red_FAD proba 88.2 0.66 1.4E-05 47.2 4.8 96 62-166 6-108 (257)
39 TIGR02963 xanthine_xdhA xanthi 88.1 0.56 1.2E-05 51.9 4.5 147 61-228 196-358 (467)
40 PF02913 FAD-oxidase_C: FAD li 86.5 2.3 5E-05 41.7 7.5 109 392-528 128-243 (248)
41 PRK09971 xanthine dehydrogenas 85.2 0.67 1.5E-05 48.0 3.0 98 62-166 9-117 (291)
42 TIGR03195 4hydrxCoA_B 4-hydrox 84.6 1 2.3E-05 47.3 4.1 98 62-166 9-116 (321)
43 TIGR03199 pucC xanthine dehydr 83.6 0.86 1.9E-05 46.5 2.9 97 64-166 2-108 (264)
44 PLN02906 xanthine dehydrogenas 82.7 2.7 5.9E-05 52.4 7.2 98 62-166 233-349 (1319)
45 COG4630 XdhA Xanthine dehydrog 75.9 3.6 7.8E-05 43.7 4.5 103 104-213 244-353 (493)
46 PF08031 BBE: Berberine and be 72.5 2.4 5.2E-05 31.4 1.7 24 506-529 16-41 (47)
47 TIGR02969 mam_aldehyde_ox alde 64.8 7.6 0.00017 48.6 4.7 61 105-166 278-357 (1330)
48 PLN00192 aldehyde oxidase 64.0 13 0.00028 46.7 6.5 99 62-166 238-351 (1344)
49 TIGR03752 conj_TIGR03752 integ 54.8 14 0.0003 40.6 4.1 49 142-200 278-327 (472)
50 KOG1996 mRNA splicing factor [ 43.7 14 0.0003 38.0 1.8 29 516-546 96-124 (378)
51 COG1319 CoxM Aerobic-type carb 43.4 34 0.00073 35.4 4.6 99 62-166 8-116 (284)
52 smart00751 BSD domain in trans 39.9 31 0.00067 25.9 2.8 12 499-510 32-43 (51)
53 PF02209 VHP: Villin headpiece 37.3 20 0.00043 25.2 1.3 19 500-518 1-21 (36)
54 PF03909 BSD: BSD domain ; I 28.6 75 0.0016 24.7 3.4 34 478-511 13-49 (62)
55 smart00153 VHP Villin headpiec 23.4 55 0.0012 23.0 1.5 19 500-518 1-21 (36)
56 PF07988 LMSTEN: LMSTEN motif; 22.9 32 0.0007 25.2 0.3 18 5-22 22-39 (48)
No 1
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=100.00 E-value=5.7e-112 Score=853.27 Aligned_cols=532 Identities=48% Similarity=0.868 Sum_probs=481.7
Q ss_pred CcccchhhHHHHhhccceEEEEEecCCCcccccceeeccccccccccccCCCCCHHHHHHHHHHHHhcCC-CCCceeeec
Q 008429 9 RPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNP-SKDGLVCTA 87 (565)
Q Consensus 9 ~~~~~~~~~~~l~~~r~i~~~~~~lp~s~~~~~~~~~~~~~~~~~~~~pa~~~~~~~V~~i~~~~~~~~~-~~~~~~~~~ 87 (565)
++++...-..+++++||+|||+|+||.|++||.++++|+|| + ...++++..|.+.|+.|+++++++.. .++.++|++
T Consensus 8 ~~~k~~~Wv~~~~~fRwv~Vv~f~LP~S~lF~~~i~~r~~~-~-~~~ssa~~~H~qrVkkIqkqlkew~d~s~k~~lcta 85 (543)
T KOG1262|consen 8 VKAKAIRWVEYFVHFRWVFVVLFLLPLSFLFDLFIYFRIWL-V-RKLSSAPREHQQRVKKIQKQLKEWLDDSEKKPLCTA 85 (543)
T ss_pred hhhhhhhHHHHHhhcceEEEehhhhhHHHHHHHHHHHHHHH-H-HHhccCchHHHHHHHHHHHHHHhhccccccCccccc
Confidence 44444444568999999999999999999999999999955 3 33566666799999999999999875 677899999
Q ss_pred CCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhccc
Q 008429 88 RKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGY 167 (565)
Q Consensus 88 ~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~gg 167 (565)
+++|+++|.+..++... .--|++..|.+||++|.++.+|+|||+|+++++.++|.+.|+++|+.|++++.||||.|+|.
T Consensus 86 Rp~Wltvs~r~~dykk~-h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~ 164 (543)
T KOG1262|consen 86 RPGWLTVSTRFFDYKKC-HHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGV 164 (543)
T ss_pred CCCeEEEEEecchhhhh-cccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeec
Confidence 99999999999888754 33445556778999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHH
Q 008429 168 GIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLR 247 (565)
Q Consensus 168 g~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~ 247 (565)
|+.++|++||++.+.+.+.|||++||+++++.++++++|||+|+.+|.||||+.+.++||++|.++++.++|.++.+ ++
T Consensus 165 Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~-l~ 243 (543)
T KOG1262|consen 165 GIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHG-LD 243 (543)
T ss_pred ccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEeccc-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998755 99
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccceEEEEEecCCcEEEEEeecCChHHHhhhccccccccccccchhhHhHHHhhhcCc
Q 008429 248 EIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGE 327 (565)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~vl~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~ 327 (565)
+.++.+.+... ..| .....++|+|+++|++.++|+|+|.++|.++..+ .+++|.+++|++||||+|++..++.+.
T Consensus 244 e~c~k~~e~~~--dsd--kntk~~dfvE~liyn~~egviMvG~fad~~dak~-~~kvN~vgwwyKpWFykHvet~lkkge 318 (543)
T KOG1262|consen 244 EYCKKITELSG--DSD--KNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKS-NAKVNDVGWWYKPWFYKHVETFLKKGE 318 (543)
T ss_pred HHHHHHHhhcc--ccc--ccccccchhheeeecCCccEEEEEeccCcccccc-ccccccchhhhhhHHHHHHHHHHhcCC
Confidence 99999988742 222 2223479999999999999999999998666543 368999999999999999999999899
Q ss_pred ccccccccccccccccceeecccccccCCchhhhhhhhcccCChhhhhHHhhhchhhhhccCCcceeeEEeeccccHHHH
Q 008429 328 FTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDA 407 (565)
Q Consensus 328 ~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~~~r~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~viqDv~vP~~~l~e~ 407 (565)
..||||+++||+||.|++||..+.++|||+|++||+|++|++|+|+++++++++.++++++.+.+|+|||.||+++|.|+
T Consensus 319 ~~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKia~LKaTt~ealRkly~~~hV~QDmlvPl~kl~ea 398 (543)
T KOG1262|consen 319 GEEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKIAFLKATTGEALRKLYFAKHVFQDMLVPLDKLKEA 398 (543)
T ss_pred CceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChHHHhhcccHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCCceeeceeeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHH
Q 008429 408 LEWQHR--EVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQW 485 (565)
Q Consensus 408 l~~l~~--~~~P~wlcP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~ 485 (565)
|+++++ ++||+||||++++++|..|+++|.|---+ .+|. ..+||+|+|+||+||-..|++.|++-+++|+||++
T Consensus 399 ld~~hke~evYPiwlcP~~l~~qp~~Gq~~~~p~~r~--~~~~--~~~my~DvGvYg~pg~v~r~e~y~~~~a~RrmEkf 474 (543)
T KOG1262|consen 399 LDTFHKEFEVYPIWLCPFRLYSQPGQGQLRPPPKSRL--VPGT--NASMYNDVGVYGTPGQVERREPYNPTHAMRRMEKF 474 (543)
T ss_pred HHHHHhhheeeeeeeeeeeccCCCCCceecCCccccC--CCCC--cceeEEecccccCCccccccCCCCHHHHHHHHHHH
Confidence 999999 99999999999999887778877662221 2343 35999999999999999998999999999999999
Q ss_pred HHHcCCcccccccccCCHHHHHhhcChhHHHHHHHhcCCCCCChhhhhhhhc-CccchHHHHHHHHHhc
Q 008429 486 LIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKK-GRKTEKEVQEAEQAQL 553 (565)
Q Consensus 486 v~~~gG~k~lya~~~~~~~eF~~~y~~~~y~~lR~ky~~~~~~~~~y~k~~~-~~~~~~~~~~~~~~~~ 553 (565)
|++++|+|+||||+||+|+|||+|||+++|+.+|.||+|.|+||++|||++. +|..+.+..+|+|+.+
T Consensus 475 vr~v~Gfq~~YAd~~m~eeef~eMFd~tLY~~~R~ky~cigaFp~vYdKikk~gr~~~~~~~~a~~~~~ 543 (543)
T KOG1262|consen 475 VRSVHGFQMLYADIYMSEEEFWEMFDGTLYNQVRLKYHCIGAFPRVYDKIKKEGRVISIGETYAVKKEE 543 (543)
T ss_pred HHHccCcceeehhhhcCHHHHHHHhhhHHHHHHHHHcCccccchHHHHhhchhccccchhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999555 9999999999999853
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=2.2e-41 Score=365.39 Aligned_cols=414 Identities=21% Similarity=0.264 Sum_probs=286.7
Q ss_pred eeeccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceE
Q 008429 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (565)
Q Consensus 43 ~~~~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~ 119 (565)
++++| |+....+.|. .|.+.++|+++++.+++.+. ....+|++|++ ++...++|++|||++||+|++
T Consensus 2 ~~w~n-W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~--~v~v~G~GhS~-------s~~~~~~gvvIdl~~l~~i~~ 71 (438)
T TIGR01678 2 VQFQN-WAKTYSASPEVYYQPTSVEEVREVLALAREQKK--KVKVVGGGHSP-------SDIACTDGFLIHLDKMNKVLQ 71 (438)
T ss_pred ceEEe-CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC--eEEEECCCCCC-------CCCccCCeEEEEhhhcCCceE
Confidence 35678 7665566666 78889999999998888764 33444555543 233446799999999999999
Q ss_pred EeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEc
Q 008429 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (565)
Q Consensus 120 vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s 199 (565)
+|+++++|+|+||+++.+|.+.|.++|+++|+.|+++.+||||++++ |.++++.+||.++|+|+++++|++||++++++
T Consensus 72 id~~~~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iat-g~hG~~~~~G~~~d~V~~l~vV~~~G~i~~~s 150 (438)
T TIGR01678 72 FDKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIIST-GTHGSSIKHGILATQVVALTIMTADGEVLECS 150 (438)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcC-CCCCCccccCcHHhhEEEEEEEcCCCcEEEeC
Confidence 99999999999999999999999999999998889999999999975 44556899999999999999999999999999
Q ss_pred CCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEEe
Q 008429 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (565)
Q Consensus 200 ~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 279 (565)
++ +++||||+.+||+|+|||||++|||++|.+...... . ..+++++++.+.+... ..++++++||
T Consensus 151 ~~-~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~-~--~~~~~~~~~~~~~~~~-----------~~~~~~~~w~ 215 (438)
T TIGR01678 151 EE-RNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQETS-F--VSTLKELLDNWDSHWK-----------SSEFFRVLWF 215 (438)
T ss_pred CC-CChhHHHHHhcCCCceEeeEEEEEEEEeccceEEEE-e--cCCHHHHHHHHHHHhh-----------cCCeEEEEEE
Confidence 86 899999999999999999999999999988755432 2 3578999988877631 2589999999
Q ss_pred cCC-cEEEEEeecCChHHHhhhccccccccccccchhhHh-HHHhhhcCcccccccccccccccccceeecccccccCCc
Q 008429 280 TST-EAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQH-AATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGD 357 (565)
Q Consensus 280 ~~~-~~vl~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~-~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~ 357 (565)
+.. .+++..+...+.+... . ..||+.. ..... .+ . +.|.++. .|.-.
T Consensus 216 p~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~-----~~------~-------l~~~~~~-~~~~~ 264 (438)
T TIGR01678 216 PYTENVVIWRQNKTNKAPSS-------P-----SNSFWDYKLGFFL-----YE------F-------LLWTSKY-LPCLT 264 (438)
T ss_pred cCCCcEEEEECccCCCCccc-------c-----cchhhhhhHHHHH-----HH------H-------HHHHHhh-ccccc
Confidence 865 4555566554421110 0 0122211 00000 00 0 0000000 01110
Q ss_pred hhhhhhhhcccCChh-------h-hhHHhhhchhhhhccCCcceeeEEeeccccHHHHHHHHhc---CC----Cceeece
Q 008429 358 QFWFRFLFGWMMPPK-------V-SLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHR---EV----YPLWLCP 422 (565)
Q Consensus 358 ~~~~r~l~~~l~~~~-------~-~~~~~~~~~~i~~~~~~~~viqDv~vP~~~l~e~l~~l~~---~~----~P~wlcP 422 (565)
..+.++.+.....++ + ..++.++ +..+.+ +++.+++||+++++++|+.+++ .. ..--++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~f~-~~~~Ey~vP~~~~~~al~~l~~~~~~~~~~~~~~v~fp 339 (438)
T TIGR01678 265 PWIERFFFWMLYGEKSSTKKESSNLSHKIFT----MECRFS-QHVQEWGIPREKTKEALLELKAMLEAHAKNKEVYAHYP 339 (438)
T ss_pred HHHHHHHHHhhcCCccCCCcceecchHHhhc----ccceee-hhceeecccHHHHHHHHHHHHHHHHhcccccCceEeee
Confidence 111111110000000 0 0111111 111223 3457999999999999999998 44 2335578
Q ss_pred eeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHcCCcc-cccccccC
Q 008429 423 HRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQ-PQYAVSEL 501 (565)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k-~lya~~~~ 501 (565)
+-.|.... . .++..| ++|..| +++|||+|-.|. +... ...+ .++.+.+|++++++|||+ |=..|+.+
T Consensus 340 iEvR~~~~--~-~~Dd~w-LSp~~~---rds~~i~~~~y~-~~~~--~~~~--~~~f~~~E~i~~~~gGRPHWgK~h~~~ 407 (438)
T TIGR01678 340 VEVRFTRG--T-LPDECL-LSPCFQ---VDTCYINAIMYR-PFGK--DVPR--LDYFLAYETIMKKFGGKPHWAKAHNVC 407 (438)
T ss_pred EEEEEeCC--C-CCCcee-cCCCCC---CceEEEEEEEcc-CCCC--CCCH--HHHHHHHHHHHHHcCCCCCchhccccc
Confidence 87775421 0 012222 344443 469999998886 4321 1123 689999999999999998 66777769
Q ss_pred CHHHHHhhcCh-hHHHHHHHhcCCCCCChh
Q 008429 502 SEKNFWRMFDA-DLYEKCRKKYKAVGTFMS 530 (565)
Q Consensus 502 ~~~eF~~~y~~-~~y~~lR~ky~~~~~~~~ 530 (565)
+.+++.++|++ +.|.+||+++||+|.|.|
T Consensus 408 ~~~~l~~~YP~~~~F~~vr~~~DP~g~F~N 437 (438)
T TIGR01678 408 KQKDFEEMYPTLHKFCDIRKKLDPTGVFLN 437 (438)
T ss_pred CHHHHHHHCcCHHHHHHHHHhhCcccccCC
Confidence 99999999998 999999999999999976
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.8e-41 Score=363.71 Aligned_cols=402 Identities=13% Similarity=0.169 Sum_probs=273.9
Q ss_pred ccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeC
Q 008429 46 GDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDK 122 (565)
Q Consensus 46 ~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~ 122 (565)
+| |+....+.|. .|.+.++|+++++.++. ....+|++|++ ++.+.++|++|||++||+|+++|+
T Consensus 2 ~n-W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~-----~v~~~G~Ghs~-------~~~~~~~g~~idl~~l~~i~~~d~ 68 (419)
T TIGR01679 2 SN-WSGEQVAAPSAIVRPTDEGELADVIAQAAK-----PVRAVGSGHSF-------TDLACTDGTMISLTGLQGVVDVDQ 68 (419)
T ss_pred cC-CCCCccCCCCeEECCCCHHHHHHHHHHhCC-----CEEEEeCCCCC-------CCcccCCCEEEEhhHcCCceeecC
Confidence 56 6665556666 67777777777766642 23444555543 233445789999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCCC
Q 008429 123 DRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDN 202 (565)
Q Consensus 123 ~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~ 202 (565)
++++|+||||+++.+|.+.|.++|+.+|+.|+++.+||||++++ |.|+++.++|.++|+|++++||++||++++++++
T Consensus 69 ~~~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~-~~hG~g~~~G~~~d~V~~l~vV~a~G~v~~~~~~- 146 (419)
T TIGR01679 69 PTGLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGT-ATHGTGVRFQALHARIVSLRLVTAGGKVLDLSEG- 146 (419)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceec-CCCCCCccCCchhhhEEEEEEEcCCCCEEEEcCC-
Confidence 99999999999999999999999999998889989999999965 5666788999999999999999999999999986
Q ss_pred CchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEEecC-
Q 008429 203 EYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTS- 281 (565)
Q Consensus 203 ~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~- 281 (565)
+++|||||++||+|+|||||++|||++|.++....... .+++++++.+.++.. ..+++++++++.
T Consensus 147 ~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~p~~ 212 (419)
T TIGR01679 147 DDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRDWR---RPLAQTLERLDEFVD-----------GHRHFEFYVFPFA 212 (419)
T ss_pred CCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEEEe---cCHHHHHHHHHHHHh-----------cCCeEEEEEecCC
Confidence 89999999999999999999999999999875433222 357888888877641 147899998876
Q ss_pred CcEEEEEeecCChHHHhhhcccccccccccc-chhhHhHHHhhhcCcccccccccccccccccceeecccccccCC-chh
Q 008429 282 TEAVFMTGRYASKEEAKKKGNVINSVGWWFK-PWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFG-DQF 359 (565)
Q Consensus 282 ~~~vl~~g~~~~~~~~~~~~~~~~~~~~~~~-p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~-~~~ 359 (565)
++++++.+..+++.. .. .. ...+ .+. ...+ .+.. .....| ....+..+..+. .+.|.. ...
T Consensus 213 ~~~~~~~~~~~~~~~-~~--~~-----~~~~~~~~-~~~~-~l~~--~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~ 275 (419)
T TIGR01679 213 GKALTITMDRSDEQP-KP--RQ-----RDVDENFL-GGLR-LLRQ--TLRRFP--SLRPRLNRLMTN---MMSSETVVDR 275 (419)
T ss_pred CeEEEEECCcCCCcc-cc--cc-----cchhhhHH-HHHH-HHHH--hcccCc--hhHHHHHHHHHh---hcCCceeecc
Confidence 456666666654211 10 00 0000 011 0001 0000 000000 000000000000 000000 000
Q ss_pred hhhhhhcccCChhhhhHHhhhchhhhhccCCcceeeEEeeccccHHHHHHHHhc----CCCceeeceeeeecCC-Ccccc
Q 008429 360 WFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHR----EVYPLWLCPHRLYKLP-YKTMV 434 (565)
Q Consensus 360 ~~r~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~viqDv~vP~~~l~e~l~~l~~----~~~P~wlcP~~~~~~~-~~~~~ 434 (565)
+.|. ...+-. ..+.--+++||.++.+++|+.+.+ ...++. .|+-.+... +.+||
T Consensus 276 ~~r~---------------~~~~~~-----~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~~~~-~pve~R~~~ad~~~L 334 (419)
T TIGR01679 276 AYKV---------------FATQRK-----VRFNEMEYHLPRENGRKALQEVIDLVERRSPPVM-FPIEVRFSAPDDSWL 334 (419)
T ss_pred ceEE---------------eccccc-----ceeeEEEEecchhHHHHHHHHHHHHHHhcCCCcc-ceEEEEEecCCCccc
Confidence 0000 000000 111122899999999999999887 223332 355555432 33444
Q ss_pred CCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHcCCcccccccccCCHHHHHhhcCh-h
Q 008429 435 YPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA-D 513 (565)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k~lya~~~~~~~eF~~~y~~-~ 513 (565)
+ |..+ .++++|+|-.|. . . .+ .++++++|+++.+.||+.++.++..++.++|+++|++ +
T Consensus 335 S--------~~~~---r~~~~ia~~~~~-~-~-----~~--~~~~~~~e~i~~~~gGRpHwgK~~~l~~~~l~~~YP~~~ 394 (419)
T TIGR01679 335 S--------PFYG---RPTCSIAVHQYA-G-M-----DF--ESYFRAVEPIFRRYAGRPHWGKRHYLTAATLRERYPRWD 394 (419)
T ss_pred C--------CCCC---CCcEEEEEEEcC-C-C-----CH--HHHHHHHHHHHHHcCCCCCchhccCCCHHHHHHHCcCHH
Confidence 3 2222 357899997775 1 1 22 6799999999999999999999999999999999998 9
Q ss_pred HHHHHHHhcCCCCCChhhhhh
Q 008429 514 LYEKCRKKYKAVGTFMSVYYK 534 (565)
Q Consensus 514 ~y~~lR~ky~~~~~~~~~y~k 534 (565)
.|.++|++|||+|.|.|-|-+
T Consensus 395 ~F~~~r~~~DP~g~F~n~~~~ 415 (419)
T TIGR01679 395 DFAAVRDDLDPDRRFLNPYTR 415 (419)
T ss_pred HHHHHHHHhCCCCccCCHHHH
Confidence 999999999999999998865
No 4
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.5e-40 Score=358.96 Aligned_cols=444 Identities=15% Similarity=0.135 Sum_probs=287.1
Q ss_pred eeeccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceE
Q 008429 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (565)
Q Consensus 43 ~~~~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~ 119 (565)
..++| |+....+.|+ .|.+.++|+++++.+++.+. ...++|++|++ ++.+.+++.+|||++||+|++
T Consensus 49 ~~w~N-Wsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~--~Vr~~GsGhS~-------sg~a~t~g~lldL~~ln~Vl~ 118 (541)
T TIGR01676 49 HTVSN-WSGTHEVLTRTFHQPEAIEELEGIVKQANEKKA--RIRPVGSGLSP-------NGIGLSRAGMVNLALMDKVLE 118 (541)
T ss_pred ccccc-cCCccccCcceEECCCCHHHHHHHHHHHHHcCC--cEEEECCCcCC-------CCcccCCCeEEEhhhCCCCEE
Confidence 44678 8888777776 88888999999988888764 33444554443 233444566899999999999
Q ss_pred EeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEc
Q 008429 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (565)
Q Consensus 120 vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s 199 (565)
+|.++++|+|+||+++.+|.+.|.++|+++|+.|+++.+||||+++. |.|+++.++|.++|+|++++||++||++++++
T Consensus 119 vD~~~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiat-gtHGtg~~~G~l~d~V~~l~lVta~G~vv~~s 197 (541)
T TIGR01676 119 VDEEKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQV-GAHGTGAKLPPIDEQVIAMKLVTPAKGTIEIS 197 (541)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEcccccc-CCcCCCCCCCCHHHhEEEEEEEECCCCEEEEC
Confidence 99999999999999999999999999999998889999999999975 55666789999999999999999999999999
Q ss_pred CCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEEe
Q 008429 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (565)
Q Consensus 200 ~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 279 (565)
++ +++|||||++||+|+|||||++||+++|.+.+....+. .+++++++.+.++.. .+++++++||
T Consensus 198 ~~-~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~---~~~~e~l~~~~~~~~-----------~~~h~~f~wf 262 (541)
T TIGR01676 198 KD-KDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI---SNMKDIKKNHKKFLA-----------DNKHVKYLHI 262 (541)
T ss_pred CC-CCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe---cCHHHHHHHHHHHHh-----------cCCcEEEEEE
Confidence 86 89999999999999999999999999999987766654 468899988888741 2589999999
Q ss_pred cCCcEEEEEeec-CChHHHhhhccccccc--ccccc---chhhHhHHHhhh--cCcccccccccccccccccceeecccc
Q 008429 280 TSTEAVFMTGRY-ASKEEAKKKGNVINSV--GWWFK---PWFYQHAATALK--RGEFTEYIPTREYYHRHTRSLYWEGKL 351 (565)
Q Consensus 280 ~~~~~vl~~g~~-~~~~~~~~~~~~~~~~--~~~~~---p~fy~~~~~~~~--~~~~~e~~p~~dy~~r~~r~~fw~~~~ 351 (565)
+..+.+++.... ++....... ..+.. ..... ..+........+ .....+-..+..+.+.. +.+....
T Consensus 263 P~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---l~~~~~~ 337 (541)
T TIGR01676 263 PYTDAIVVVTCNPISKSRGPPK--FKPKYTSEEAIQHVRDLYRESLKKYRGQVADSASEEPDIDEFSFTE---LRDKLLA 337 (541)
T ss_pred cCCCceeEEEcCCCCcccCCCC--ccccccchhhhhhhhhhhhhhhhhhhcccccccccccchhhhHHHH---HHHHHhh
Confidence 987666665543 321100000 00000 00000 000000000000 00000000000110000 0000000
Q ss_pred cccCCch---hhhhhh-hcccCChhh---hhHHhhhchhhhhccCCcceeeEEeeccc-------cHHHHHHHHhc---C
Q 008429 352 ILPFGDQ---FWFRFL-FGWMMPPKV---SLLKATQGEAIRNYYHQNHVIQDMLVPLY-------KVGDALEWQHR---E 414 (565)
Q Consensus 352 ~~p~~~~---~~~r~l-~~~l~~~~~---~~~~~~~~~~i~~~~~~~~viqDv~vP~~-------~l~e~l~~l~~---~ 414 (565)
+-+.... .+.+.. ..|...... +.++.+. +..+.+ +++.+++||.+ +..+++++|.+ .
T Consensus 338 ~~~l~~~~~~~in~~~~~~~~~s~~~~v~~S~~vf~----~~~~f~-q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~ 412 (541)
T TIGR01676 338 LDPLNKEHVIEINKAEAEFWRKSEGYKVGWSDEILG----FDCGGH-QWVSETCFPAGTLAKPNMKDIEYIEELKQLIEK 412 (541)
T ss_pred CCcccchhHHHHHHHHHHHhhcCCceEeCcHHHhcC----cccccc-eEEEEEEEecccccccccchHHHHHHHHHHHHh
Confidence 0000000 111110 011111110 1222222 111223 56679999999 55999999998 3
Q ss_pred CCceeeceeeeecCC-CccccCCCCCccCCCCCCCC-CCcceeEEEEeecCCC-CCC-CCCCCchHHHH---HHHHHHHH
Q 008429 415 VYPLWLCPHRLYKLP-YKTMVYPEPGFEHHRRQGDT-SYAQMYTDVGVYYAPG-PIL-RGEVFDGAEAV---RKMEQWLI 487 (565)
Q Consensus 415 ~~P~wlcP~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~n~g~~g~~~-~~~-~~~~~~~~~~~---r~lE~~v~ 487 (565)
..+.-.+|+-.|.+. +..||+ |..|.+ +.=.|||+|..|- |. +.. |++ - -.++. +..|+++.
T Consensus 413 ~~~~~~fPiEvR~ta~Dd~~LS--------pa~~r~~~~~s~~I~v~~y~-~~~~~~~~~~-~-~~~~f~~~~~~e~i~~ 481 (541)
T TIGR01676 413 ENIPAPAPIEQRWTACSKSPMS--------PASSSADDDIFSWVGIIMYL-PTMDARQRKE-I-TEEFFHYRHLTQALLW 481 (541)
T ss_pred cCCCCCCCeEEEeecCCCcccC--------CccCCCCCCceEEEEEEecC-CCCChhhhhh-h-HHHHHhhhHHHHHHHH
Confidence 334445677777653 344543 323320 0016999999997 54 210 000 0 01455 67788888
Q ss_pred Hc-CCcc-cccccccC-CHHH-------HHhhcChhHHHHHHHhcCCCCCChhhhhh
Q 008429 488 EN-GGFQ-PQYAVSEL-SEKN-------FWRMFDADLYEKCRKKYKAVGTFMSVYYK 534 (565)
Q Consensus 488 ~~-gG~k-~lya~~~~-~~~e-------F~~~y~~~~y~~lR~ky~~~~~~~~~y~k 534 (565)
+. ||++ |-..|+ + +.++ |.++||-+.|.++|+++||+|.|.|-|-+
T Consensus 482 ~~ygGRPHWgK~h~-~~~~~~l~~~yprl~~~YP~d~F~~~R~~lDP~g~F~N~yL~ 537 (541)
T TIGR01676 482 DHFSAFEHWAKIEV-PKDKDELAALQARLKKKFPVDASNKARKALDPNKILSNNKLE 537 (541)
T ss_pred HhcCCccCcceecC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCCccccHHHH
Confidence 88 9998 655665 7 9999 88888889999999999999999998865
No 5
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=1.4e-37 Score=341.05 Aligned_cols=443 Identities=17% Similarity=0.151 Sum_probs=289.0
Q ss_pred eeeccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceE
Q 008429 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (565)
Q Consensus 43 ~~~~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~ 119 (565)
..++| |+....+.|. .|.+.++|+++++.+++.+. ...++|++|++ ++...+++.+|||++||+|++
T Consensus 84 ~~~~N-Wsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~--~VrvvGsGhS~-------~~l~~td~glIdL~~l~~Il~ 153 (573)
T PLN02465 84 HTVSN-WSGTHEVQTRRYHQPESLEELEDIVKEAHEKGR--RIRPVGSGLSP-------NGLAFSREGMVNLALMDKVLE 153 (573)
T ss_pred hhccc-cccccCCCCCEEEEeCCHHHHHHHHHHHHHcCC--cEEEEcCCcCC-------CCeeeCCCEEEECcCCCCcEE
Confidence 35788 8888878776 78888888888888887764 23333444322 234445566799999999999
Q ss_pred EeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEc
Q 008429 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (565)
Q Consensus 120 vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s 199 (565)
+|.++++|+|++|+++.+|.+.|.++|+.++..|++..+||||+++ +|.|+++.++|.++++|+++++|+++|++++++
T Consensus 154 vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIs-tGtHGtG~~~g~i~d~V~~l~lVta~G~vv~~s 232 (573)
T PLN02465 154 VDKEKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQ-VGAHGTGARIPPIDEQVVSMKLVTPAKGTIELS 232 (573)
T ss_pred EeCCCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhh-CCCCCcCCCcCcHhheEEEEEEEECCCCEEEEC
Confidence 9999999999999999999999999999999888899999999996 567777888999999999999999999999999
Q ss_pred CCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEEe
Q 008429 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (565)
Q Consensus 200 ~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 279 (565)
++ +++|||++.++|.|+|||||++||+++|.+.+...++. .+++++.+.+.++.. ..++++++||
T Consensus 233 ~~-~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~---~~~~~~~~~~~~~~~-----------~~~h~~f~wf 297 (573)
T PLN02465 233 KE-DDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFV---SNRKEIKKNHKKWLS-----------ENKHIRYMWI 297 (573)
T ss_pred CC-CCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEE---ecHHHHHHHHHHHHH-----------hCcccceeec
Confidence 86 78999999999999999999999999999987655544 357888888877741 2478899999
Q ss_pred cCCcEEEEEeec-CChHHHhhhcccccc-cc--ccccch--hhHhHHHhhhcCcccc--cccccccccccccceeecccc
Q 008429 280 TSTEAVFMTGRY-ASKEEAKKKGNVINS-VG--WWFKPW--FYQHAATALKRGEFTE--YIPTREYYHRHTRSLYWEGKL 351 (565)
Q Consensus 280 ~~~~~vl~~g~~-~~~~~~~~~~~~~~~-~~--~~~~p~--fy~~~~~~~~~~~~~e--~~p~~dy~~r~~r~~fw~~~~ 351 (565)
+..+.+++.-.. .++.+... .... +. ....+. +++..-.... ....+ ...+.....+.- ..|....
T Consensus 298 P~td~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--~~~~~~l 371 (573)
T PLN02465 298 PYTDTVVVVTCNPLSKWKEPP---KIKPKYSEDERVQPLRDLYKESAGTKS-SENPEPDIQEMGFGELRDK--LLALDPL 371 (573)
T ss_pred CCcceEEEEeCCCCCCccCCc---ccccccchhhhhhhhhhhhhhhccccc-cccccccccccchHHHHHH--HhhcCcc
Confidence 887666665543 22111000 0000 00 000000 1110000000 00000 000000000000 0000000
Q ss_pred cccCCchhhhhhh-hcccCChhh---hhHHhhhchhhhhccCCcceeeEEeeccc-------cHHHHHHHHhc---CCCc
Q 008429 352 ILPFGDQFWFRFL-FGWMMPPKV---SLLKATQGEAIRNYYHQNHVIQDMLVPLY-------KVGDALEWQHR---EVYP 417 (565)
Q Consensus 352 ~~p~~~~~~~r~l-~~~l~~~~~---~~~~~~~~~~i~~~~~~~~viqDv~vP~~-------~l~e~l~~l~~---~~~P 417 (565)
.|--...+.+.. ..|...... +.++.+. +..+.+ +++.+++||.+ +..++++.|.+ ...+
T Consensus 372 -~p~~~~~vn~~~~~~~~~s~~~~v~~S~~if~----~~~~~~-q~~~EyaiP~~~~~~~~~~~~~~l~el~~~i~~~~~ 445 (573)
T PLN02465 372 -DPDHVKRVNAAEAEFWRRSEGYRVGWSDEILG----FDCGGQ-QWVSEVCFPAGTLAKPSMKDLEFMEELLALIEKEGI 445 (573)
T ss_pred -chhhhHHHHHHHHHHhhcCCCcEeCcHHHhcC----ccccce-eEEEEEEEeccccccccccHHHHHHHHHHHHHhcCC
Confidence 000000111110 011111110 1222222 111223 56679999999 55588888887 3333
Q ss_pred eeeceeeeecCC-CccccCCCCCccCCCCCC-CCCCcceeEEEEeecCCCCC-C-CC---CCCchHHHH-HHHHHHHHHc
Q 008429 418 LWLCPHRLYKLP-YKTMVYPEPGFEHHRRQG-DTSYAQMYTDVGVYYAPGPI-L-RG---EVFDGAEAV-RKMEQWLIEN 489 (565)
Q Consensus 418 ~wlcP~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~g~~g~~~~~-~-~~---~~~~~~~~~-r~lE~~v~~~ 489 (565)
--.+|+-.|.+. +..||+| ..| ..++..|||.|..|- |.+. . |+ +.| ..+. +.+|+++.+.
T Consensus 446 ~~~fPiE~R~ta~dd~~LSp--------a~~~~~d~~s~~I~i~~Y~-~~~~~~~~~~~~~~~--~~yf~~~~e~i~~~y 514 (573)
T PLN02465 446 PAPAPIEQRWTASSSSPMSP--------ASSPSPDDLHSWVGIIMYL-PTEDERQRKEITEEF--FHYRKKTQRNLWDKY 514 (573)
T ss_pred CCCCceEEEeecCCccccCc--------ccCCCCCCceEEEEEEecc-CCChhhhhhhhhHHH--HHHHHHHHHHHHHHc
Confidence 344677777653 3445542 222 112348999999997 5431 0 11 123 4677 9999999999
Q ss_pred CCccccccccc--------CCHHHHHhhcChhHHHHHHHhcCCCCCChhhhhh
Q 008429 490 GGFQPQYAVSE--------LSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYK 534 (565)
Q Consensus 490 gG~k~lya~~~--------~~~~eF~~~y~~~~y~~lR~ky~~~~~~~~~y~k 534 (565)
||+...-+--. ++++++.++|+-+.|.++|+++||+|.|.|-|-+
T Consensus 515 ggRPHWgK~h~~~~~~~~~~~~~~L~~~YP~d~F~~~R~~lDP~g~f~N~~L~ 567 (573)
T PLN02465 515 SAYEHWAKIEVPKDKEELEALRERLRKRFPVDAFNKARKELDPKGILSNNLLE 567 (573)
T ss_pred CCCcccceeccccccchhhcCHHHHHhhCCHHHHHHHHHHhCCCCccCCHHHH
Confidence 99985555555 8999999999999999999999999999998865
No 6
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=4.3e-37 Score=338.83 Aligned_cols=452 Identities=14% Similarity=0.117 Sum_probs=279.5
Q ss_pred CcccccceeeccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcC
Q 008429 36 SVTIYFLIYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLS 112 (565)
Q Consensus 36 s~~~~~~~~~~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls 112 (565)
.+.--++..++| |+....+.|. .|.+.++|+++++.+++.+. +..++.|++|++..+..+.. .++|++|||+
T Consensus 12 ~~~~~~~~~w~n-Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~-~v~v~GG~gHs~~~~a~t~~---~~ggvvIdL~ 86 (557)
T TIGR01677 12 GANCTVSNAYGA-FPDRSTCRAANVAYPKTEAELVSVVAAATAAGR-KMKVVTRYSHSIPKLACPDG---SDGALLISTK 86 (557)
T ss_pred CCCceeecchhh-cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC-eEEEEeCCCCCcCcccccCC---CCCEEEEEcc
Confidence 333345556789 8888888887 88999999999999998774 22222233444321111100 1246999999
Q ss_pred CCCCceEEeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCC-cccccccceeeEEEEEec
Q 008429 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSS-HIYGLFSDTVVAYEIVLA 191 (565)
Q Consensus 113 ~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s-~~~G~~~d~V~~~evVla 191 (565)
+||+|+++|.++++|+|+||+++.+|.+.|.++|+.++..|.+..+||||++++|+.|+.. .++|.++|+|++++||++
T Consensus 87 ~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a 166 (557)
T TIGR01677 87 RLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVP 166 (557)
T ss_pred cCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeC
Confidence 9999889999999999999999999999999999999998888899999999765555333 488999999999999999
Q ss_pred Cc------eEEEEcCCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCC
Q 008429 192 DG------QVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQD 265 (565)
Q Consensus 192 dG------~vv~~s~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (565)
|| ++++++.+ +++|||||++||+|+|||||++|||++|.+. ....+. ....+++.+.+.+...
T Consensus 167 ~G~a~G~~~v~~~s~~-~~~dLf~a~rgslG~lGVVtevTL~~~P~~~-~~~~~~--~~~~~~l~~~~~~~~~------- 235 (557)
T TIGR01677 167 ASAAEGFAKVRILSEG-DTPNEFNAAKVSLGVLGVISQVTLALQPMFK-RSVTYT--MRDDSDFEDQFVTFGK------- 235 (557)
T ss_pred CCcccCcceEEEeCCC-CCHHHHHhhccCCCccEeeeEEEEEEEcccc-ceEEEE--cCCHHHHHHHHHHhhc-------
Confidence 98 89999886 8999999999999999999999999999877 333443 3456777766666521
Q ss_pred CCCCccceEEEEEecCCcEEEEEe-ecCChHHHhhhccccccccccccchhhHhHHHhhhcCcccccccccccccccccc
Q 008429 266 NQAKVPDFVEGMIYTSTEAVFMTG-RYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRS 344 (565)
Q Consensus 266 ~~~~~~~~vd~~~~~~~~~vl~~g-~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~ 344 (565)
..++.+++|++....+++.. ..++.... . ...+.+....+-+......... .. ++.+.+ +...+
T Consensus 236 ----~~~~~~f~w~P~~~~~~~~~~~r~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~-~~~~~ 300 (557)
T TIGR01677 236 ----KHEFADITWYPSQGKAVYRRDDRVPVNAS-G--NGVNDFLGFRSTLIAAIAGIRA-LE------ETFERS-RNANG 300 (557)
T ss_pred ----CCeEEEEEEECCCCeEEEEecCcCCCCCC-c--chhhhhccccccchhhhhhhhh-hh------HHHhhh-ccccc
Confidence 14788888888766555543 22221110 0 0000000000000000000000 00 000000 00000
Q ss_pred eeecccccccCCchhhh--------hhhhcccCChhhhhHHhhhc-------------hhhhhccCC---cceeeEEeec
Q 008429 345 LYWEGKLILPFGDQFWF--------RFLFGWMMPPKVSLLKATQG-------------EAIRNYYHQ---NHVIQDMLVP 400 (565)
Q Consensus 345 ~fw~~~~~~p~~~~~~~--------r~l~~~l~~~~~~~~~~~~~-------------~~i~~~~~~---~~viqDv~vP 400 (565)
..+.+.. .|.....+. +.+...-.. . +.++.... .+....+.+ ...-.+++||
T Consensus 301 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~s~~v~~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP 377 (557)
T TIGR01677 301 KCVTATI-TSAALFLPGYGLTNSGGIIFTGYPVV-G-SQGRMQTSGSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVP 377 (557)
T ss_pred ceecccc-ccchhhhhcccccccccccccCCcee-c-chHhhcccccccccccccccccCccccccccccceeEEEEEee
Confidence 0000000 000000000 000000000 0 01111110 001101100 0112388999
Q ss_pred cccHHHHHHHHhc---CCCce-----eeceeeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCC
Q 008429 401 LYKVGDALEWQHR---EVYPL-----WLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEV 472 (565)
Q Consensus 401 ~~~l~e~l~~l~~---~~~P~-----wlcP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~ 472 (565)
+++++++|+.+++ ...|+ -+.|+-.|... +++.| |+| + ++++||+|-.|. +.+.+....
T Consensus 378 ~e~~~~al~~vr~~~~~~~~~~~~~~~~fpievR~v~------aDd~w-LSp--~---rds~~i~~~~~~-~~~~~~~~~ 444 (557)
T TIGR01677 378 VSRFRDFVLDVKRLRDMEPKSLCGVELYNGILIRYVK------ASPAY-LGK--E---EDAVDFDFTYYR-AKDPLTPRL 444 (557)
T ss_pred HHHHHHHHHHHHHHHHhcccccCceeeecCeEEEEec------CCccc-cCC--C---CceEEEEEEEec-CCCCcccch
Confidence 9999999999998 33222 13344455431 22333 232 2 469999999997 332110011
Q ss_pred CchHHHHHHHHHH-HHHcCCcccccccccCCHHHHHhhcCh-hHHHHHHHhcCCCCCChhhhhhhh
Q 008429 473 FDGAEAVRKMEQW-LIENGGFQPQYAVSELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYKSK 536 (565)
Q Consensus 473 ~~~~~~~r~lE~~-v~~~gG~k~lya~~~~~~~eF~~~y~~-~~y~~lR~ky~~~~~~~~~y~k~~ 536 (565)
+ ..+++.+|++ +.+.|||+..=+...++.+++.++|++ +.|.+||+++||+|.|.|-|-+-.
T Consensus 445 ~--~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~dF~alR~~~DP~g~F~N~yl~~l 508 (557)
T TIGR01677 445 Y--EDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADKFLKVKDSYDPKGLFSSEWSDEI 508 (557)
T ss_pred H--HHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 3 5799999997 999999985555555999999999998 999999999999999999987733
No 7
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.7e-34 Score=313.23 Aligned_cols=431 Identities=15% Similarity=0.165 Sum_probs=270.0
Q ss_pred eccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeeccccccccc-CCeEEEEcCCCCC----
Q 008429 45 LGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKR-ARHFEVDLSAFRN---- 116 (565)
Q Consensus 45 ~~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~givIdls~l~~---- 116 (565)
.+| |.....+.|. .|.++++|+++++.+++.........+|++|++. +++. ++|++|||++||+
T Consensus 54 s~d-~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~-------G~a~~~~GivIdms~Ln~i~~~ 125 (525)
T PLN02441 54 SKD-FGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLN-------GQAQAPGGVVVDMRSLRGGVRG 125 (525)
T ss_pred hcC-cccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCC-------CCccCCCeEEEECCCCCCcCcc
Confidence 455 5555556676 6778888888888876322111234445555432 3332 4799999999999
Q ss_pred --ceEEeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCce
Q 008429 117 --ILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQ 194 (565)
Q Consensus 117 --il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~ 194 (565)
++++|.++.+|+|++|++|.++.+++.++|++++..+.+..+||||+++++|+|+.+.+||...|+|++++||++||+
T Consensus 126 ~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGe 205 (525)
T PLN02441 126 PPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGE 205 (525)
T ss_pred CceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCce
Confidence 678999999999999999999999999999998877788999999999988999999999999999999999999999
Q ss_pred EEEEcCCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceE
Q 008429 195 VVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFV 274 (565)
Q Consensus 195 vv~~s~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 274 (565)
+++|+++ +|+|||||++||+|+|||||+++|+++|+++.+..... .+.+++++.+...++... ......+++
T Consensus 206 vv~~s~~-~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~-~y~~~~~~~~d~~~li~~------~~~~~~d~v 277 (525)
T PLN02441 206 VVTCSPT-QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRV-LYSDFSTFTRDQERLISR------PPENSFDYV 277 (525)
T ss_pred EEEeCCC-CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEE-EcCCHHHHHHHHHHHHhc------CCCCCcceE
Confidence 9999986 89999999999999999999999999999984432222 356788888887776420 011236999
Q ss_pred EEEEecC-CcEEEEEee-cCChHHHhhhccccccccccccchhhHh-HHHhhhcCccccccccccccc---ccccceeec
Q 008429 275 EGMIYTS-TEAVFMTGR-YASKEEAKKKGNVINSVGWWFKPWFYQH-AATALKRGEFTEYIPTREYYH---RHTRSLYWE 348 (565)
Q Consensus 275 d~~~~~~-~~~vl~~g~-~~~~~~~~~~~~~~~~~~~~~~p~fy~~-~~~~~~~~~~~e~~p~~dy~~---r~~r~~fw~ 348 (565)
|+.++.. ...+...-. +-+..+..+. ..+...+ .|+|.. +...-.........+-.+-+. ++.++..+.
T Consensus 278 eg~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~~~~~ 352 (525)
T PLN02441 278 EGFVIVNRNGLINNWRSSFFSPSDPVRA-SSLPSDG----GVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPGLLFT 352 (525)
T ss_pred eEEEEeCCCCceeeeecccCCccccchh-hccccCC----ceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCCCcee
Confidence 9999987 333322221 2222222111 0111111 121110 000000000000000000000 000000000
Q ss_pred ccccccCCchhhhhhhhcccCChhhhhHHhhhchhhhhccCCcceeeEEeeccccHHHHHHHHhc------CCCceeece
Q 008429 349 GKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHR------EVYPLWLCP 422 (565)
Q Consensus 349 ~~~~~p~~~~~~~r~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~viqDv~vP~~~l~e~l~~l~~------~~~P~wlcP 422 (565)
.. ...+.++. +.- .. .-.+...|.= ...|-=-++.||-+++.+|.+.+-+ -.-|+-++|
T Consensus 353 ~d-------~~y~~fl~-rv~-~~---e~~lr~~G~W---~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~~~G~~liyP 417 (525)
T PLN02441 353 TD-------VSYVDFLD-RVH-VE---ELKLRSKGLW---EVPHPWLNLFVPKSRIADFDDGVFKGILLDGTNGPILVYP 417 (525)
T ss_pred cc-------cCHHHHHH-hhh-hH---HHHHhhcCCc---CCCCchhheeCcHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 00 01111110 000 00 0011111111 1112223899999999999998877 348999999
Q ss_pred eeeecCCCccccCCCCC-ccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHcCC--cccccccc
Q 008429 423 HRLYKLPYKTMVYPEPG-FEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGG--FQPQYAVS 499 (565)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~~~gG--~k~lya~~ 499 (565)
+...+-. .+. .. .|. ++.+.=|++.....| .......-++.||+|=++..+.|+ ++|| -.
T Consensus 418 ~~~~~~~-------~~~s~~---~P~----~~~~y~v~~l~~~~p-~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl--~~ 480 (525)
T PLN02441 418 LNRSKWD-------NRTSAV---IPD----EDIFYLVALLRSALP-SGDDLEHLLAQNKEILRFCEKAGIGVKQYL--PH 480 (525)
T ss_pred cccccCC-------CCCccc---cCC----CCeEEEEEEcCCCCC-CcccHHHHHHHHHHHHHHHHHcCCceEEcC--CC
Confidence 9875421 111 11 121 245656666654222 111122337889999889988888 5555 34
Q ss_pred cCCHHHHHhhcCh--hHHHHHHHhcCCCCCC
Q 008429 500 ELSEKNFWRMFDA--DLYEKCRKKYKAVGTF 528 (565)
Q Consensus 500 ~~~~~eF~~~y~~--~~y~~lR~ky~~~~~~ 528 (565)
|.|++|+.+.|+. +.|.+.|++|||...|
T Consensus 481 ~~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL 511 (525)
T PLN02441 481 YTTQEEWKRHFGPKWETFVRRKAKFDPLAIL 511 (525)
T ss_pred CCCHHHHHHHhcchHHHHHHHHhhCCchhhc
Confidence 5899999999985 8899999999998766
No 8
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=8.3e-33 Score=305.40 Aligned_cols=381 Identities=15% Similarity=0.162 Sum_probs=245.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L 138 (565)
.|.+.++|++++++|++++. ....+|+++++. |++ .+.++|++|||++||+|+++|.++.+|+||||+++.+|
T Consensus 139 ~P~s~eeV~~ivk~a~~~~i--pv~prGgGts~~--G~~---~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L 211 (555)
T PLN02805 139 FPRSEEEVSKIVKSCNKYKV--PIVPYGGATSIE--GHT---LAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLEL 211 (555)
T ss_pred EcCCHHHHHHHHHHHHHCCC--cEEEECCCCCCC--CCc---cCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHH
Confidence 79999999999999999885 222334444322 111 12357999999999999999999999999999999999
Q ss_pred HHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCC----CCchhhhhhcccc
Q 008429 139 SRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD----NEYKDLFYAIPWS 214 (565)
Q Consensus 139 ~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~----~~~~dLf~a~~Gs 214 (565)
+++|.++|+++|++|. +.+||||++++++.|..+.+||.++|+|++++||++||++++++.. ..++||+|+++||
T Consensus 212 ~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~Gs 290 (555)
T PLN02805 212 NEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGS 290 (555)
T ss_pred HHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccC
Confidence 9999999999998876 5789999999888888899999999999999999999999987432 2578999999999
Q ss_pred cCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEEecC-------------
Q 008429 215 QGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTS------------- 281 (565)
Q Consensus 215 ~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~------------- 281 (565)
+|+|||||+++||+.|.|+....... .|.+++++.+++.++... ...|..+|.++...
T Consensus 291 eGtLGIIT~~tlrl~p~P~~~~~~~~-~f~~~~~a~~av~~i~~~--------g~~psa~ElmD~~~~~~~~~~~~~~~p 361 (555)
T PLN02805 291 EGTLGVITEVTLRLQKIPQHSVVAMC-NFPTIKDAADVAIATMLS--------GIQVSRVELLDEVQIRAINMANGKNLP 361 (555)
T ss_pred CCceEEEEEEEEEeecCCcceEEEEE-EcCCHHHHHHHHHHHHhC--------CCCcEEEEEECHHHHHHHHHhcCCCCC
Confidence 99999999999999999986554443 467899988888776321 12245666654321
Q ss_pred CcEEEEEeecCChHHHhhhccccccccccccchhhHhHHHhhhcCcccccccccccccccccceeecccccccCCchhhh
Q 008429 282 TEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWF 361 (565)
Q Consensus 282 ~~~vl~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~~~ 361 (565)
....++.+...+.++...+. .....+.. ++....++..+ +...
T Consensus 362 ~~~~Ll~e~~g~~~~~~~~~---------------~~~~~i~~---------------~~g~~~~~~a~-----~~~e-- 404 (555)
T PLN02805 362 EAPTLMFEFIGTEAYAREQT---------------LIVQKIAS---------------KHNGSDFVFAE-----EPEA-- 404 (555)
T ss_pred cceEEEEEEecCcHHHHHHH---------------HHHHHHHH---------------hCCCceEEEeC-----CHHH--
Confidence 12333433333322211100 00011100 00000111111 0000
Q ss_pred hhhhcccCChhhhhHHhhhchhhhhccCC-cceeeEEeeccccHHHHHHHHhc--CCCceeeceeeeecCCCccccCCCC
Q 008429 362 RFLFGWMMPPKVSLLKATQGEAIRNYYHQ-NHVIQDMLVPLYKVGDALEWQHR--EVYPLWLCPHRLYKLPYKTMVYPEP 438 (565)
Q Consensus 362 r~l~~~l~~~~~~~~~~~~~~~i~~~~~~-~~viqDv~vP~~~l~e~l~~l~~--~~~P~wlcP~~~~~~~~~~~~~~~~ 438 (565)
..++|.+|.....++.+..+. ..+++|++||+++++++++.+++ ..+++-.|-+ .
T Consensus 405 --------~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~-g------------- 462 (555)
T PLN02805 405 --------KKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVI-A------------- 462 (555)
T ss_pred --------HHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEE-E-------------
Confidence 023344444333333322222 24678999999999999999999 5555322111 1
Q ss_pred CccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHcCCcc-cccccccCCHHHHHhhcCh---hH
Q 008429 439 GFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQ-PQYAVSELSEKNFWRMFDA---DL 514 (565)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k-~lya~~~~~~~eF~~~y~~---~~ 514 (565)
|...| .+.+++. +. +.. .++.....+..+++-+.+.++||-= -=+..-..-.+-+.++|+. +.
T Consensus 463 ----HaGdG-----nlH~~i~-~~-~~~--~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~l 529 (555)
T PLN02805 463 ----HAGDG-----NFHTIIL-FD-PSQ--EDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQT 529 (555)
T ss_pred ----EcCCC-----cEEEEec-cC-CCC--HHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHH
Confidence 11122 3556663 32 211 1111111456777788889999931 1111122233344555663 77
Q ss_pred HHHHHHhcCCCCCC
Q 008429 515 YEKCRKKYKAVGTF 528 (565)
Q Consensus 515 y~~lR~ky~~~~~~ 528 (565)
+.++|+.+||++.|
T Consensus 530 m~~IK~a~DP~gIL 543 (555)
T PLN02805 530 MKRIKKALDPNNIM 543 (555)
T ss_pred HHHHHHHhCcCcCC
Confidence 88999999999755
No 9
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=3.2e-31 Score=290.90 Aligned_cols=187 Identities=22% Similarity=0.247 Sum_probs=159.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccc----cccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD----YKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~----~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~ 134 (565)
.|.+.++|++++++|++.+. |+++.|+|++. .+..+|++|||++||+|+++|+++++|+||||++
T Consensus 61 ~P~s~eeV~~iv~~a~~~~i-----------pv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~ 129 (499)
T PRK11230 61 LPKQMEQVQALLAVCHRLRV-----------PVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVGRRARVQPGVR 129 (499)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------eEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCcc
Confidence 79999999999999999875 33333333321 2235799999999999999999999999999999
Q ss_pred HHHHHHHHccCCceeeeecC-CCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCC---CCchhhhhh
Q 008429 135 MGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD---NEYKDLFYA 210 (565)
Q Consensus 135 ~~~L~~~l~~~Gl~~pv~p~-~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~---~~~~dLf~a 210 (565)
+.+|+++|.++|+++|++|+ ...+||||++++++.|+.+.+||.+.|+|++++||++||++++++.. +.++||+|+
T Consensus 130 ~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l 209 (499)
T PRK11230 130 NLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLAL 209 (499)
T ss_pred HHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhh
Confidence 99999999999999888774 56799999998888888899999999999999999999999998743 258999999
Q ss_pred cccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHc
Q 008429 211 IPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (565)
Q Consensus 211 ~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (565)
++||+|+|||||+++||+.|.|+.....+. .|.+.+++.+++.++.
T Consensus 210 ~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~-~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 210 FTGSEGMLGVVTEVTVKLLPKPPVARVLLA-SFDSVEKAGLAVGDII 255 (499)
T ss_pred hccCCCccEEEEEEEEEEEcCCcceEEEEE-ECCCHHHHHHHHHHHH
Confidence 999999999999999999999986544333 4678999988887764
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.97 E-value=1.8e-30 Score=282.72 Aligned_cols=389 Identities=20% Similarity=0.177 Sum_probs=248.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCC-eEEEEcCCCCCceEEeCCCcEEEEcCCCCHH
Q 008429 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR-HFEVDLSAFRNILDIDKDRMIAKVEPLVNMG 136 (565)
Q Consensus 58 a~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-givIdls~l~~il~vd~~~~~v~Ve~Gv~~~ 136 (565)
..|.++++|++++++|.+++. ..+.+|+++++. +.+... +++|||++||+|+++|+++.+|+|+||+++.
T Consensus 36 ~~p~s~~eV~~iv~~a~~~~~--~v~prG~gts~~-------g~~~~~~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~ 106 (459)
T COG0277 36 VFPKSEEEVAAILRLANENGI--PVVPRGGGTSLS-------GGAVPDGGVVLDLSRLNRILEIDPEDGTATVQAGVTLE 106 (459)
T ss_pred EccCCHHHHHHHHHHHHHcCC--eEEEECCCCCcc-------ccccCCCcEEEEchhhcchhccCcCCCEEEEcCCccHH
Confidence 378999999999999999885 234445544332 222223 9999999999998999999999999999999
Q ss_pred HHHHHHccCCceeeeecCCC-ccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcC----CCCchhhhhhc
Q 008429 137 QISRATCPMNLSLAVVAELD-DLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFYAI 211 (565)
Q Consensus 137 ~L~~~l~~~Gl~~pv~p~~~-~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~----~~~~~dLf~a~ 211 (565)
+|.++|.++|+++|++|+.. .+||||++++++.|..+.+||.+.|+|+++++|++||++++++. +..++||++++
T Consensus 107 ~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~ 186 (459)
T COG0277 107 DLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALF 186 (459)
T ss_pred HHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhc
Confidence 99999999999999999876 99999999998999899999999999999999999999999876 35678999999
Q ss_pred ccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEEec-----------
Q 008429 212 PWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYT----------- 280 (565)
Q Consensus 212 ~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----------- 280 (565)
.||+|+|||||++++|+.|.++....... .+.+.+............. .. ....+..++.+...
T Consensus 187 iGs~GtlGiit~~tl~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (459)
T COG0277 187 VGSEGTLGIITEATLKLLPLPETKATAVA-GFPSIEAAARLAVAAIALL-EA---LGVIPAALEFMDRPIKAAEAYLGGG 261 (459)
T ss_pred ccCCccceEEEEEEEEeccCCchheEEEE-eCCCHHHHHHHHHHHHHhh-hh---cCCCceeeeecchhHHHHHHhcccc
Confidence 99999999999999999999875544443 2344444433211110000 00 00112233333211
Q ss_pred ---CC-cEEEEEeecCChHHHhhhccccccccccccchhhHhHHHhhhcCcccccccccccccccccceeecccccccCC
Q 008429 281 ---ST-EAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFG 356 (565)
Q Consensus 281 ---~~-~~vl~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~ 356 (565)
.. ..+++......... .+... .+.. .+ ...... .++... .....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~~~------~~------~~~~~~--~~~~~~-~~~~~ 309 (459)
T COG0277 262 ALPLEAPARLLVEVEGSDEA----------------AVDEA-LEAL------GE------LLLEHG--LARDLV-VAQDL 309 (459)
T ss_pred CCCCCCceEEEEEEcCCcHH----------------HHHHH-HHHH------HH------HHHhcC--CceeEE-EeCCH
Confidence 00 00011110000000 00000 0000 00 000000 000000 00000
Q ss_pred chhhhhhhhcccCChhhhhHHhhhchhhhhccCCcceeeEEeeccccHHHHHHHHhc--CCCc--eeeceeeeecCCCcc
Q 008429 357 DQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHR--EVYP--LWLCPHRLYKLPYKT 432 (565)
Q Consensus 357 ~~~~~r~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~viqDv~vP~~~l~e~l~~l~~--~~~P--~wlcP~~~~~~~~~~ 432 (565)
.. ..+.|..|...........+. .+..|+++|.+.++++++.+.+ ..+. ++.+-+.
T Consensus 310 -~~----------~~~~~~~r~~~~~~~~~~~~~-~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 369 (459)
T COG0277 310 -AE----------AARLWLARKGALAAAGALGPG-VIQEDVVVPLEALPEFLREILALLDKAGLALRVALFG-------- 369 (459)
T ss_pred -HH----------HHHHHHHHHHHHHHHHhhCCC-ccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeec--------
Confidence 00 122233333333333332222 5667999999999999999998 4433 2211111
Q ss_pred ccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHcCCcccccccccCCHHHHHhhcCh
Q 008429 433 MVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA 512 (565)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k~lya~~~~~~~eF~~~y~~ 512 (565)
|...| .+++++-... . . .........++++.+++.+.++||..+.+....+++.+|...|..
T Consensus 370 ----------~~~dg-----~~~~~~~~~~-~-~-~~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~ 431 (459)
T COG0277 370 ----------HAGDG-----NLHLNILYDV-G-D-EAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG 431 (459)
T ss_pred ----------ccCCC-----cceeeeccCC-C-c-cHHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh
Confidence 10011 2444444333 1 0 000111235788899999999999999999999999999999985
Q ss_pred ---hHHHHHHHhcCCCCCChh
Q 008429 513 ---DLYEKCRKKYKAVGTFMS 530 (565)
Q Consensus 513 ---~~y~~lR~ky~~~~~~~~ 530 (565)
+...++|+.|||++.|-.
T Consensus 432 ~~~~~~~~~k~~~DP~~i~np 452 (459)
T COG0277 432 EAWALLRAIKRAFDPNGIFNP 452 (459)
T ss_pred HHHHHHHHHHHhcCCCCCCCC
Confidence 778999999999998844
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=2.8e-30 Score=278.26 Aligned_cols=187 Identities=25% Similarity=0.272 Sum_probs=159.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccc----cccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD----YKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~----~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~ 134 (565)
.|.+.++|+++++++++++. |+.+.|+|++. .+.+++++|||++||+|+++|+++.+|+||||++
T Consensus 3 ~P~s~eev~~iv~~a~~~~i-----------~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~ 71 (413)
T TIGR00387 3 FPKNTEQVARILKLCHEHRI-----------PIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVR 71 (413)
T ss_pred CCCCHHHHHHHHHHHHHcCC-----------cEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCcc
Confidence 48999999999999999885 44444444332 2235799999999999999999999999999999
Q ss_pred HHHHHHHHccCCceeeeecC-CCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcC----CCCchhhhh
Q 008429 135 MGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFY 209 (565)
Q Consensus 135 ~~~L~~~l~~~Gl~~pv~p~-~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~----~~~~~dLf~ 209 (565)
+.+|+++|.++|+++|+.|+ ...+||||++++++.|..+.+||.++|+|++++||++||++++++. ...++||++
T Consensus 72 ~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~ 151 (413)
T TIGR00387 72 NLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTG 151 (413)
T ss_pred HHHHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhh
Confidence 99999999999999988775 4578999999888888789999999999999999999999999863 235789999
Q ss_pred hcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHc
Q 008429 210 AIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (565)
Q Consensus 210 a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (565)
+++||+|+|||||+++||++|.|+....... .|.+++++++++.++.
T Consensus 152 l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~-~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 152 LFVGSEGTLGIVTEATLKLLPKPENIVVALA-FFDSIEKAMQAVYDII 198 (413)
T ss_pred hcccCCccceEEEEEEEEeecCCCccEEEEE-ECCCHHHHHHHHHHHH
Confidence 9999999999999999999999985443333 4678999999887764
No 12
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.95 E-value=1.1e-26 Score=240.65 Aligned_cols=435 Identities=18% Similarity=0.231 Sum_probs=256.1
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 56 KKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 56 ~pa~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
+-..|.+++++.+|++.+++++. +.+++|. |+|.++..+++|.+|++..||+++++|++..++||++|+++
T Consensus 52 nv~yP~teaeL~~lVa~A~~a~~--kirvVg~-------gHSp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 52 NVNYPKTEAELVELVAAATEAGK--KIRVVGS-------GHSPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCc--eEEEecc-------cCCCCcceeccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 34479999999999999999884 3334343 45667778889999999999999999999999999999999
Q ss_pred HHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcc-cccccceeeEEEEEecCceEEEEcCCCCchhhhhhcccc
Q 008429 136 GQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHI-YGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWS 214 (565)
Q Consensus 136 ~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~-~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~Gs 214 (565)
.||++++...|+.+|..|++..++|||+++ +|.|++|.. |+...+.+....++.++|.++.++++ .+|++|.|++.|
T Consensus 123 rQLie~~~~~GlsL~~~~si~e~sVgGii~-TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-~dpe~F~AAkvS 200 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSISEQSVGGIIS-TGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-KDPELFNAAKVS 200 (518)
T ss_pred HHHHHHHHhcCccccCCCceecceeeeEEe-cccCCCccccCcccceeEEEeeeccCCceEEEeccc-CCHHHHhhhhhc
Confidence 999999999999999999999999999994 677777776 77777777778888899999999986 899999999999
Q ss_pred cCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHH-HHcCCCCCCCCCCCCccceEEEEEecCCcEEEE-EeecC
Q 008429 215 QGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYA-DSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFM-TGRYA 292 (565)
Q Consensus 215 ~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~vl~-~g~~~ 292 (565)
.|.||||.++||+++|..+.+...+. .+..++.+.+. .+ ....+|+|.+|++..+.++. .+...
T Consensus 201 LG~LGVIs~VTl~~vp~Fk~s~t~~v---~n~~dl~~d~~~~~-----------~~~~EF~~~~w~Py~~kvV~~~~nrv 266 (518)
T KOG4730|consen 201 LGVLGVISQVTLSVVPAFKRSLTYVV---TNDSDLFKDWKVTL-----------GESHEFVDVLWYPYTGKVVYRRDNRV 266 (518)
T ss_pred ccceeEEEEEEEEEEecceeeeEEEE---echHHHHHHHHHHh-----------cccccceEEEEeccCCeEEEEecCcc
Confidence 99999999999999999885443333 34555444433 22 12369999999987655444 33322
Q ss_pred ChHHHhhhccccccccccccchhhHhHHHhhh----cCcccccccccccccccccceeeccccc--ccCCchhhhhhhhc
Q 008429 293 SKEEAKKKGNVINSVGWWFKPWFYQHAATALK----RGEFTEYIPTREYYHRHTRSLYWEGKLI--LPFGDQFWFRFLFG 366 (565)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~----~~~~~e~~p~~dy~~r~~r~~fw~~~~~--~p~~~~~~~r~l~~ 366 (565)
..........+......++........++... .+.-+....+..|+++..-+.--.+... .|..+ . -+
T Consensus 267 ~~ntg~~~f~p~~~~~s~~~~~~~s~~e~~~~~r~~~~kc~~a~~~tp~l~~~sf~~~~~~~~~t~~pvig-----~-q~ 340 (518)
T KOG4730|consen 267 PVNTGLPDFKPFRPQPSAVLAKLRSFEESIELFRDANGKCVSADSVTPYLERFSFGLTNGGKLFTGYPVIG-----V-QG 340 (518)
T ss_pred ccccCCccccCCCCcHHHHHHHHHHHHHHHHHhhhccCceecCcccchhHHHhhhheecCcEeeecCcccC-----c-cc
Confidence 11110000000000000000000000011110 0100000012223322111111111000 01110 0 00
Q ss_pred ccCChhhhhHH------hhhchhhhhccCCcceeeE--EeeccccHHHHHHHHhc--CCCceeeceeeeecCCCccccCC
Q 008429 367 WMMPPKVSLLK------ATQGEAIRNYYHQNHVIQD--MLVPLYKVGDALEWQHR--EVYPLWLCPHRLYKLPYKTMVYP 436 (565)
Q Consensus 367 ~l~~~~~~~~~------~~~~~~i~~~~~~~~viqD--v~vP~~~l~e~l~~l~~--~~~P~wlcP~~~~~~~~~~~~~~ 436 (565)
..+-.--.+.. -...+-|.. ...++ ..+|++....|+..+.. .+-|.=+|-+....+-.--+..+
T Consensus 341 ~~~~s~sCl~s~~~g~~~~W~~ri~g-----~f~~qt~~s~pl~~~~~ai~dik~l~~ie~~~~c~~~~~~pi~iR~~t~ 415 (518)
T KOG4730|consen 341 KMMSSGSCLDSQSDGTACEWDPRIKG-----FFFHQTTFSIPLTAVKDAINDIKDLVKIEPKSLCGLETYNPILIRYVTS 415 (518)
T ss_pred hhccchhhhhhccCccccCCCccccC-----chhheeeeccchhhhhhHhhhhhhhcccChhhhhhhhhccceeEEEecC
Confidence 00000000000 000111111 11122 44899999999998888 46666666544331000001112
Q ss_pred CCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHH-HcCCcccccccccCCHHHHHhhc-ChhH
Q 008429 437 EPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLI-ENGGFQPQYAVSELSEKNFWRMF-DADL 514 (565)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~-~~gG~k~lya~~~~~~~eF~~~y-~~~~ 514 (565)
.|.+. -..+....-+.||++--.|. |-. + ..+ -..++++||++.. +.||++..-+.--..-|-.-+-| |-++
T Consensus 416 sPayl-~~t~~~~~fd~~Y~~a~dyr-p~~--~-~l~-e~~~~e~lEq~al~kyna~PHWaKn~~lafe~vi~ky~n~~~ 489 (518)
T KOG4730|consen 416 SPAYL-GKTSEDCDFDTTYYRAKDYR-PLT--P-RLY-EDFYFEELEQIALFKYNAKPHWAKNRNLAFEGVIRKYKNLDK 489 (518)
T ss_pred Cchhh-ccCcccceeeeeeeeccCCC-cCC--C-Ccc-hhHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHhccChHH
Confidence 23331 11111112235566666655 321 1 112 1248999999998 99999744433323222233344 5699
Q ss_pred HHHHHHhcCCCCCChhhh
Q 008429 515 YEKCRKKYKAVGTFMSVY 532 (565)
Q Consensus 515 y~~lR~ky~~~~~~~~~y 532 (565)
|.++|++|||.+.|.+=+
T Consensus 490 flkvr~~lDP~~lFssew 507 (518)
T KOG4730|consen 490 FLKVRKELDPKGLFSSEW 507 (518)
T ss_pred HHHHHHhcCccchhhhhh
Confidence 999999999999886543
No 13
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.94 E-value=3.1e-26 Score=240.12 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeeccccc---ccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNV---DYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L 138 (565)
..++|+++++++++.+. |+.+.|+|++ +. ..++++|||++||+|+++|+++.+|+|+||+++.+|
T Consensus 3 ~~~ev~~~v~~A~~~~~-----------~v~~~GgGt~~~~g~-~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el 70 (352)
T PRK11282 3 ISAALLERVRQAAADGT-----------PLRIRGGGSKDFYGR-ALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAEL 70 (352)
T ss_pred hHHHHHHHHHHHHHCCC-----------eEEEECCCCCCCCCC-CCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHH
Confidence 46889999999988774 3333333321 11 225679999999999999999999999999999999
Q ss_pred HHHHccCCceeeeec-CCC-ccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcC----CCCchhhhhhcc
Q 008429 139 SRATCPMNLSLAVVA-ELD-DLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFYAIP 212 (565)
Q Consensus 139 ~~~l~~~Gl~~pv~p-~~~-~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~----~~~~~dLf~a~~ 212 (565)
.++|.++|+++|..| ... .+||||++++|+.|..+.+||.++|+|+++++|++||++++++. +..++||||+++
T Consensus 71 ~~~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~ 150 (352)
T PRK11282 71 EAALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMA 150 (352)
T ss_pred HHHHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHh
Confidence 999999999998765 343 59999999988888888999999999999999999999999863 336899999999
Q ss_pred cccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHc
Q 008429 213 WSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (565)
Q Consensus 213 Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (565)
||+|+|||||+++||++|.|+.... +...+ +.+++++++.++.
T Consensus 151 Gs~GtLGVitevtlkl~P~p~~~~t-~~~~~-~~~~a~~~~~~~~ 193 (352)
T PRK11282 151 GSLGTLGVLLEVSLKVLPRPRAELT-LRLEM-DAAEALRKLNEWG 193 (352)
T ss_pred hCCchhhhheEEEEEEEecCceEEE-EEEec-CHHHHHHHHHHHh
Confidence 9999999999999999999885432 22222 3577777777774
No 14
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.90 E-value=2.2e-23 Score=216.27 Aligned_cols=163 Identities=22% Similarity=0.264 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeeccc--ccccc--cCCeEEEEcC---CCCCceEEeCCCcEEEEcC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMR--NVDYK--RARHFEVDLS---AFRNILDIDKDRMIAKVEP 131 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~~~--~~~givIdls---~l~~il~vd~~~~~v~Ve~ 131 (565)
.|.+.++|+++++.|...+. .. |..+.|+| ..+++ ..+|++|.|+ .|+++-.+..++..|.|.|
T Consensus 69 ~P~S~edVs~ilk~~~~~~s-~~--------pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~ 139 (505)
T KOG1231|consen 69 FPSSVEDVSKILKHCNDYGS-NF--------PVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVLVVDDLYVDVSA 139 (505)
T ss_pred cCCCHHHHHHHHHHHhccCC-cc--------eeeccCCcccccCccccCCCCeEEEEehhhccCCCceeecccceEEeeC
Confidence 46667777777777766541 11 23333333 33443 2588776664 3666655666679999999
Q ss_pred CCCHHHHHHHHccCCc--eeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhh
Q 008429 132 LVNMGQISRATCPMNL--SLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (565)
Q Consensus 132 Gv~~~~L~~~l~~~Gl--~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~ 209 (565)
|..|-+|++++.++|+ +.+.++.. .||||.++++|+|+..++||...+||++++||+++|++++|++. .|++||+
T Consensus 140 g~~Widll~~t~e~GL~p~swtDyl~--ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r-~n~~lf~ 216 (505)
T KOG1231|consen 140 GTLWIDLLDYTLEYGLSPFSWTDYLP--LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKR-ANSNLFF 216 (505)
T ss_pred ChhHHHHHHHHHHcCCCccCcCCccc--eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccc-cCceeee
Confidence 9999999999999999 55555543 89999999999999999999999999999999999999999997 9999999
Q ss_pred hcccccCCCceEEEEEEEEEeccc
Q 008429 210 AIPWSQGTLGLLVSAEIKLIPIKE 233 (565)
Q Consensus 210 a~~Gs~G~lGIVt~~tl~l~p~~~ 233 (565)
++.||+|+|||||+++++|+|+|.
T Consensus 217 ~vlGglGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGGLGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeccCcceeeEEEEEEEeccCCc
Confidence 999999999999999999999994
No 15
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.83 E-value=1.1e-20 Score=191.94 Aligned_cols=190 Identities=18% Similarity=0.239 Sum_probs=158.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L 138 (565)
.|.+.++|++|++.|.+.+. .++..||..... |+|- +..+.|+|+|.+||+|+++|+-.+++.+++||.+.++
T Consensus 95 ~Pkst~eVS~ILkYCn~~kL--AVVPQGGNTgLV--GgSV---PvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~ 167 (511)
T KOG1232|consen 95 KPKSTEEVSAILKYCNDRKL--AVVPQGGNTGLV--GGSV---PVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENA 167 (511)
T ss_pred cCCCHHHHHHHHHhhccccE--EEecCCCCcccc--cCcc---cchHHHhhhhhhhccccccccccceEEeccceEehhh
Confidence 68999999999999988653 233335554433 3222 3458899999999999999999999999999999999
Q ss_pred HHHHccCCceeeee-cCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEE----cCCCCchhhhhhccc
Q 008429 139 SRATCPMNLSLAVV-AELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRA----TKDNEYKDLFYAIPW 213 (565)
Q Consensus 139 ~~~l~~~Gl~~pv~-p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~----s~~~~~~dLf~a~~G 213 (565)
..+|.++|+++|-+ |.-.+|-|||.++.++.|-.--+||+.+-+|+++|+|+|+|+|+.. .+++.+.|+-+.++|
T Consensus 168 d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIG 247 (511)
T KOG1232|consen 168 DNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIG 247 (511)
T ss_pred HHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheec
Confidence 99999999999975 5788999999997666665679999999999999999999999873 567789999999999
Q ss_pred ccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHH
Q 008429 214 SQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADS 256 (565)
Q Consensus 214 s~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (565)
|+|++||||.+++-+.|.|+.+.+.|+.+ .+++++++.+.+.
T Consensus 248 SEGtlGVvT~vSil~~~kpksvn~af~gi-~sf~~v~k~fv~A 289 (511)
T KOG1232|consen 248 SEGTLGVVTKVSILAPPKPKSVNVAFIGI-ESFDDVQKVFVEA 289 (511)
T ss_pred CCceeeEEeeEEEeecCCCcceeEEEEcc-ccHHHHHHHHHHH
Confidence 99999999999999999999888888753 4577666655443
No 16
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.83 E-value=5.4e-20 Score=198.61 Aligned_cols=205 Identities=11% Similarity=0.045 Sum_probs=157.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeeccccccc--ccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDY--KRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMG 136 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~--~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~ 136 (565)
.|.+.++|++|+++|.+++. .+++.|+++++. |++.... -..++|+|||++||+|++|| ++.+++|+|||++.
T Consensus 44 ~P~SteEVa~IVklC~e~~v--PVIPRGgGTGLt--GGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~ 118 (564)
T PRK11183 44 FPGTLLELWRVLQACVAADK--IIIMQAANTGLT--GGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLY 118 (564)
T ss_pred ecCCHHHHHHHHHHHHHcCC--eEEEeCCCcccc--cCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHH
Confidence 69999999999999999985 344555555432 2222110 01248999999999999999 45789999999999
Q ss_pred HHHHHHccCCceeeeec-C-CCccchhchhcccCCCCCCcccccccceeeEEEEEecCceE-------EEEcCC------
Q 008429 137 QISRATCPMNLSLAVVA-E-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQV-------VRATKD------ 201 (565)
Q Consensus 137 ~L~~~l~~~Gl~~pv~p-~-~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~v-------v~~s~~------ 201 (565)
+|.++|.++|+.++.++ + +-.+||||.|+.++.|....+||.+.++++. ++|++||++ ++..++
T Consensus 119 ~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~ 197 (564)
T PRK11183 119 QLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILT 197 (564)
T ss_pred HHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHH
Confidence 99999999999988754 3 3467999999888888889999999999999 999999999 432221
Q ss_pred ---CC----------------------------------chhhhhhc--ccccCCCceEEEEEEEEEeccceeEEEEecC
Q 008429 202 ---NE----------------------------------YKDLFYAI--PWSQGTLGLLVSAEIKLIPIKEYMKLTYKPV 242 (565)
Q Consensus 202 ---~~----------------------------------~~dLf~a~--~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~ 242 (565)
+. |.|+...+ .||+|+|||+ +++|++.|.|+-..+.|. .
T Consensus 198 ~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~i-g 275 (564)
T PRK11183 198 RLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYI-G 275 (564)
T ss_pred hhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEE-e
Confidence 11 23888888 9999999999 999999999987666666 4
Q ss_pred CCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEEEE
Q 008429 243 ASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMI 278 (565)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 278 (565)
+.+.+++.+...+++.. ....|...|.|.
T Consensus 276 ~n~~~~~~~~rr~il~~-------~~~lP~a~Eym~ 304 (564)
T PRK11183 276 TNDPAVLTEIRRHILAN-------FKNLPVAGEYMH 304 (564)
T ss_pred CCCHHHHHHHHHHHHHh-------CCCCceeEeecC
Confidence 67888888877776421 122355666664
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.82 E-value=4.1e-20 Score=169.45 Aligned_cols=131 Identities=31% Similarity=0.410 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccc-cCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHH
Q 008429 60 KEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYK-RARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (565)
Q Consensus 60 ~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L 138 (565)
|.+.++|+++++++++.+. ....++++|.+. ..+ ..++++|||++||+|+++|+++++++|+||+++.+|
T Consensus 7 P~s~~ev~~~v~~a~~~~~--~v~~~g~G~~~~-------~~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 7 PKSVEEVQAIVKFANENGV--PVRVRGGGHSWT-------GQSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp ESSHHHHHHHHHHHHHTTS--EEEEESSSTTSS-------STTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred eCCHHHHHHHHHHHHHcCC--cEEEEcCCCCcc-------cccccCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 8999999999999999885 333334444332 222 268999999999998899999999999999999999
Q ss_pred HHHHccCCceeeeec-CCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEc
Q 008429 139 SRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (565)
Q Consensus 139 ~~~l~~~Gl~~pv~p-~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s 199 (565)
+++|.++|++++..+ .+..+||||++++++.+..++.||.++|+|+++++|++||+++++|
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 78 YEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999998655 5678899999998898888999999999999999999999999985
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=7.4e-18 Score=174.21 Aligned_cols=150 Identities=22% Similarity=0.275 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccC---CeEEEEcCC-CCCceEEeCCCcEEEEcCCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSA-FRNILDIDKDRMIAKVEPLVN 134 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~-l~~il~vd~~~~~v~Ve~Gv~ 134 (565)
.|.+.++|+++++++++.+. |+..+|.|+|....+ +|++|++++ |+.| +++ +.+++|+||++
T Consensus 36 ~P~s~edv~~~v~~a~~~~~-----------p~~v~GgGsnll~~d~g~~gvvI~l~~~l~~i-~~~--~~~v~v~aG~~ 101 (298)
T PRK13905 36 EPADIEDLQEFLKLLKENNI-----------PVTVLGNGSNLLVRDGGIRGVVIRLGKGLNEI-EVE--GNRITAGAGAP 101 (298)
T ss_pred eCCCHHHHHHHHHHHHHcCC-----------CEEEEeCCceEEecCCCcceEEEEecCCcceE-Eec--CCEEEEECCCc
Confidence 58999999999999998876 777788887765443 489999998 9887 554 56899999999
Q ss_pred HHHHHHHHccCCce-eeeecCCCccchhchhcccCCCCCCcccc-cccceeeEEEEEecCceEEEEcCCCCchhhhhhcc
Q 008429 135 MGQISRATCPMNLS-LAVVAELDDLTVGGLINGYGIEGSSHIYG-LFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIP 212 (565)
Q Consensus 135 ~~~L~~~l~~~Gl~-~pv~p~~~~~tvGG~i~ggg~g~~s~~~G-~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~ 212 (565)
+.+|.++|.++|+. +...+..+. ||||++..++ +.|| .++|+|+++++|++||++++++++ |++|++|
T Consensus 102 ~~~L~~~l~~~Gl~gle~~~gipG-TVGGai~~Na-----G~~G~~~~d~v~~v~vv~~~G~~~~~~~~----e~~~~yR 171 (298)
T PRK13905 102 LIKLARFAAEAGLSGLEFAAGIPG-TVGGAVFMNA-----GAYGGETADVLESVEVLDRDGEIKTLSNE----ELGFGYR 171 (298)
T ss_pred HHHHHHHHHHcCCCcchhccCCCc-chhHHHHHcC-----CcCceEhheeEEEEEEEeCCCCEEEEEHH----HcCCcCc
Confidence 99999999999983 111122332 8999985332 1244 799999999999999999998754 9999999
Q ss_pred cccCC--CceEEEEEEEEEecc
Q 008429 213 WSQGT--LGLLVSAEIKLIPIK 232 (565)
Q Consensus 213 Gs~G~--lGIVt~~tl~l~p~~ 232 (565)
+|.+. +||||+++|++.|..
T Consensus 172 ~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 172 HSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cccCCCCCEEEEEEEEEEcCCC
Confidence 98654 899999999999874
No 19
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.70 E-value=6.9e-17 Score=164.54 Aligned_cols=187 Identities=20% Similarity=0.247 Sum_probs=152.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccc---ccc--C---CeEEEEcCCCCCceEEeCCCcEEEEc
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD---YKR--A---RHFEVDLSAFRNILDIDKDRMIAKVE 130 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~---~~~--~---~givIdls~l~~il~vd~~~~~v~Ve 130 (565)
-|...++|-+|++.+..++. -.+++|+|.+. +-+ + .-+.+|++.||+||-+|.++-++.+|
T Consensus 166 WP~chdevVkiv~lA~khN~-----------~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~e 234 (613)
T KOG1233|consen 166 WPKCHDEVVKIVELAMKHNC-----------AIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAE 234 (613)
T ss_pred cccchHHHHHHHHHHhhcCe-----------EEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEe
Confidence 57778888888888888774 22334444321 111 1 23557889999999999999999999
Q ss_pred CCCCHHHHHHHHccCCceeeeec-CCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEE-Ec--CCCCchh
Q 008429 131 PLVNMGQISRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVR-AT--KDNEYKD 206 (565)
Q Consensus 131 ~Gv~~~~L~~~l~~~Gl~~pv~p-~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~-~s--~~~~~~d 206 (565)
+|++..+|.+.|.+.|++.+.-| ++...|+||.++..+.|+.-..||++-|-|+.+.+|+|.|.+-. |+ +-+.+||
T Consensus 235 aGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPD 314 (613)
T KOG1233|consen 235 AGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPD 314 (613)
T ss_pred cCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCCC
Confidence 99999999999999999998777 67889999999999999999999999999999999999998764 32 1236899
Q ss_pred hhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHc
Q 008429 207 LFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (565)
Q Consensus 207 Lf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (565)
+.+-+.||+|||||||++++|+.|+|++.+.--. .|+++++-+..+.+..
T Consensus 315 ihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~-aFPNFEqGV~f~REvA 364 (613)
T KOG1233|consen 315 IHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSF-AFPNFEQGVNFFREVA 364 (613)
T ss_pred cceEEeccCcceeEEEEEEEEEeechhhhhcCcc-ccCcHHHHHHHHHHHH
Confidence 9999999999999999999999999987654333 4678888887777763
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.7e-15 Score=156.88 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=121.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCC---eEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
.|.+.++|+++++++++.+. |+..+|.|+|....++ |++|+|++|++| +++. .+++|+||+.+
T Consensus 42 ~p~~~edv~~~l~~a~~~~i-----------p~~v~GgGSNll~~d~g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~ 107 (305)
T PRK12436 42 APTNYDEIQEVIKYANKYNI-----------PVTFLGNGSNVIIKDGGIRGITVSLIHITGV-TVTG--TTIVAQCGAAI 107 (305)
T ss_pred ecCCHHHHHHHHHHHHHcCC-----------CEEEEcCCeEEEEeCCCeeEEEEEeCCcCcE-EEeC--CEEEEEeCCcH
Confidence 69999999999999998886 8888888888776554 899999889987 7763 58999999999
Q ss_pred HHHHHHHccCCce----eeeecCCCccchhchhcccCCCCCCcccc-cccceeeEEEEEecCceEEEEcCCCCchhhhhh
Q 008429 136 GQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYG-LFSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (565)
Q Consensus 136 ~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i~ggg~g~~s~~~G-~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a 210 (565)
.+|.+++.++|+. +...|+ ||||++.+++.+ || .+.|.+.+++++++||++++++++ |+.|+
T Consensus 108 ~~L~~~~~~~gl~Gle~~~giPG----tVGGav~~NAGa-----yG~~~~dvl~~v~vv~~~G~v~~~~~~----e~~f~ 174 (305)
T PRK12436 108 IDVSRIALDHNLTGLEFACGIPG----SVGGALYMNAGA-----YGGEISFVLTEAVVMTGDGELRTLTKE----AFEFG 174 (305)
T ss_pred HHHHHHHHHcCCccchhhcCCcc----chhHHHHhcCcc-----chhehheeeeEEEEEeCCCCEEEEEHH----HhcCc
Confidence 9999999999884 222344 799998543322 55 788899999999999999999875 89999
Q ss_pred ccccc--CCCceEEEEEEEEEec
Q 008429 211 IPWSQ--GTLGLLVSAEIKLIPI 231 (565)
Q Consensus 211 ~~Gs~--G~lGIVt~~tl~l~p~ 231 (565)
+|.|. ....||++++|++.+.
T Consensus 175 YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 175 YRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCcCCCCCEEEEEEEEEEcCC
Confidence 99983 3457999999999774
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=2.7e-15 Score=155.06 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=118.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCC---eEEEEcCC-CCCceEEeCCCcEEEEcCCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSA-FRNILDIDKDRMIAKVEPLVN 134 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~-l~~il~vd~~~~~v~Ve~Gv~ 134 (565)
.|.+.++|+++++++++++. |+..+|.|+|....++ |++|++++ ++.+ .++ +.+++|+||+.
T Consensus 41 ~p~~~edl~~~v~~a~~~~i-----------p~~vlGgGSNllv~d~g~~gvVI~l~~~~~~i-~~~--~~~v~v~AG~~ 106 (302)
T PRK14652 41 RPADPDALSALLRAVRELGV-----------PLSILGGGANTLVADAGVRGVVLRLPQDFPGE-STD--GGRLVLGAGAP 106 (302)
T ss_pred EcCCHHHHHHHHHHHHHCCC-----------cEEEEcCCcceeecCCCEeeEEEEecCCcceE-Eec--CCEEEEECCCc
Confidence 58999999999999999886 8888999998766554 79999977 4444 443 46899999999
Q ss_pred HHHHHHHHccCCce----eeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhh
Q 008429 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (565)
Q Consensus 135 ~~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a 210 (565)
+.+|.+++.++|+. +...|+ ||||++..++ +..+|.++|+|.++++|+++| +.+.++ .|+.|+
T Consensus 107 ~~~L~~~~~~~GL~GlE~l~gIPG----TvGGav~mNa----Ga~ggei~d~v~~v~vv~~~G-~~~~~~----~e~~f~ 173 (302)
T PRK14652 107 ISRLPARAHAHGLVGMEFLAGIPG----TLGGAVAMNA----GTKLGEMKDVVTAVELATADG-AGFVPA----AALGYA 173 (302)
T ss_pred HHHHHHHHHHcCCcccccccCCCc----chhHHHHHcC----CCCceEhhheEEEEEEECCCC-cEEeeh----hhcCcc
Confidence 99999999999994 333344 9999995543 246799999999999999999 555554 399999
Q ss_pred ccccc-CCCceEEEEEEEEEecc
Q 008429 211 IPWSQ-GTLGLLVSAEIKLIPIK 232 (565)
Q Consensus 211 ~~Gs~-G~lGIVt~~tl~l~p~~ 232 (565)
+|+|. +.-||||+++|++.|..
T Consensus 174 YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 174 YRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cceeccCCCeEEEEEEEEEecCC
Confidence 99984 33489999999999854
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=3.4e-15 Score=154.58 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCC---eEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
.|.+.++|+++++++++.+. |+..+|.|+|....++ |++|++++|++| +++. .+++|+||+.+
T Consensus 42 ~p~~~edv~~~v~~a~~~~i-----------p~~vlGgGSNll~~d~g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~ 107 (307)
T PRK13906 42 TPTKNEEVQAVVKYAYQNEI-----------PVTYLGNGSNIIIREGGIRGIVISLLSLDHI-EVSD--DAIIAGSGAAI 107 (307)
T ss_pred EcCCHHHHHHHHHHHHHcCC-----------CEEEEcCceeEeecCCCcceEEEEecCccce-EEeC--CEEEEECCCcH
Confidence 59999999999999999886 8888899988876554 899999889998 7764 48999999999
Q ss_pred HHHHHHHccCCce----eeeecCCCccchhchhcccCCCCCCccc-ccccceeeEEEEEecCceEEEEcCCCCchhhhhh
Q 008429 136 GQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIY-GLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (565)
Q Consensus 136 ~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i~ggg~g~~s~~~-G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a 210 (565)
.+|.+++.++|+. +...|+ ||||++..++. .| |.++|+|+++++|+++|++++.+++ |+.++
T Consensus 108 ~~l~~~~~~~Gl~GlE~~~gIPG----tVGGav~mNaG-----ayGg~i~D~l~~v~vv~~~G~~~~~~~~----e~~f~ 174 (307)
T PRK13906 108 IDVSRVARDYALTGLEFACGIPG----SIGGAVYMNAG-----AYGGEVKDCIDYALCVNEQGSLIKLTTK----ELELD 174 (307)
T ss_pred HHHHHHHHHcCCccchhhcCCCc----cHhHHHHhhCC-----cchhhhhhheeEEEEEeCCCCEEEEEHH----HccCc
Confidence 9999999999994 222333 89998844332 24 6899999999999999999999875 89999
Q ss_pred ccccc--CCCceEEEEEEEEEe
Q 008429 211 IPWSQ--GTLGLLVSAEIKLIP 230 (565)
Q Consensus 211 ~~Gs~--G~lGIVt~~tl~l~p 230 (565)
+|.|. ..--||++++|++.|
T Consensus 175 YR~S~~~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 175 YRNSIIQKEHLVVLEAAFTLAP 196 (307)
T ss_pred CCcccCCCCCEEEEEEEEEECC
Confidence 99984 223599999999986
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=7.7e-15 Score=154.53 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCC---eEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
.|.+++++.+++++++..+. |+..+|.|+|.+..++ |++|+++ ++++ +++.++.+|+|++|+.|
T Consensus 38 ~p~s~edl~~~l~~a~~~~~-----------p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~i-~i~~~~~~v~vgAG~~~ 104 (363)
T PRK13903 38 TCTSTEELVAAVRELDAAGE-----------PLLVLGGGSNLVIADDGFDGTVVRVA-TRGV-TVDCGGGLVRAEAGAVW 104 (363)
T ss_pred EeCCHHHHHHHHHHHHHCCC-----------CEEEEeCCeeEeECCCCccEEEEEeC-CCcE-EEeCCCCEEEEEcCCCH
Confidence 58999999999999999886 8888999998877654 7999997 5777 78766679999999999
Q ss_pred HHHHHHHccCCce----eeeecCCCccchhchhc--ccCCCCCCcccccccceeeEEEEEecC-ceEEEEcCCCCchhhh
Q 008429 136 GQISRATCPMNLS----LAVVAELDDLTVGGLIN--GYGIEGSSHIYGLFSDTVVAYEIVLAD-GQVVRATKDNEYKDLF 208 (565)
Q Consensus 136 ~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i~--ggg~g~~s~~~G~~~d~V~~~evVlad-G~vv~~s~~~~~~dLf 208 (565)
.+|.+++.++|+. +...|+ ||||++. +|++| +.++|.|.++++++.+ |++++.++ .|++
T Consensus 105 ~~l~~~a~~~GL~GlE~laGIPG----TVGGAv~mNaGayG------~ei~D~l~sV~vvd~~~G~~~~~~~----~el~ 170 (363)
T PRK13903 105 DDVVARTVEAGLGGLECLSGIPG----SAGATPVQNVGAYG------QEVSDTITRVRLLDRRTGEVRWVPA----ADLG 170 (363)
T ss_pred HHHHHHHHHcCCccccccCCCCc----chhhHhhcCCChhH------HHHhhhEeEEEEEECCCCEEEEEEH----HHcc
Confidence 9999999999985 233455 8999883 33333 4789999999999965 99999875 4999
Q ss_pred hhccccc---CCCceEEEEEEEEEecc
Q 008429 209 YAIPWSQ---GTLGLLVSAEIKLIPIK 232 (565)
Q Consensus 209 ~a~~Gs~---G~lGIVt~~tl~l~p~~ 232 (565)
|++|+|. ++.+|||+++|++.|..
T Consensus 171 f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 171 FGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred eeccccccCCCCCEEEEEEEEEEEcCC
Confidence 9999983 34789999999999874
No 24
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.59 E-value=9.8e-15 Score=149.83 Aligned_cols=147 Identities=24% Similarity=0.235 Sum_probs=120.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeeccccccccc---CCeEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKR---ARHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~---~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
.|.+.++|+++++++++.+. |+..+|.|+|.... .++++|++++|+.+ .+|+ +.+++|+||+.+
T Consensus 18 ~p~s~edl~~~l~~a~~~~~-----------p~~vlGgGSNll~~d~~~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~~~ 84 (284)
T TIGR00179 18 CPESIEQLVNVLDNAKEEDQ-----------PLLILGEGSNLLILDDGRGGVIINLGKGIDI-EDDE-GEYVHVGGGENW 84 (284)
T ss_pred EeCCHHHHHHHHHHHHHcCC-----------CEEEEecceEEEEccCCcCeEEEECCCCceE-EEec-CCEEEEEcCCcH
Confidence 58999999999999999886 78888888887653 37899999999887 5666 579999999999
Q ss_pred HHHHHHHccCCc----eeeeecCCCccchhchhcccCCCCCCccccc-ccceeeEEEEEecCceEEEEcCCCCchhhhhh
Q 008429 136 GQISRATCPMNL----SLAVVAELDDLTVGGLINGYGIEGSSHIYGL-FSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (565)
Q Consensus 136 ~~L~~~l~~~Gl----~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~-~~d~V~~~evVladG~vv~~s~~~~~~dLf~a 210 (565)
.+|.+++.++|+ +++..|+ ||||++..++ +.||. +.|.|+++++|++||++++.+++ |+.++
T Consensus 85 ~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~mNA-----GayG~~i~d~l~~v~vv~~~G~~~~~~~~----~~~f~ 151 (284)
T TIGR00179 85 HKLVKYALKNGLSGLEFLAGIPG----TVGGAVIMNA-----GAYGVEISEVLVYATILLATGKTEWLTNE----QLGFG 151 (284)
T ss_pred HHHHHHHHHCCCcccccCCCCCc----hHHHHHHHhc-----ccchhehhheEEEEEEEeCCCCEEEEEHH----Hcccc
Confidence 999999999999 6666666 8999984333 22555 44578999999999999998775 99999
Q ss_pred ccccc--CCC-ceEEEEEEEEEec
Q 008429 211 IPWSQ--GTL-GLLVSAEIKLIPI 231 (565)
Q Consensus 211 ~~Gs~--G~l-GIVt~~tl~l~p~ 231 (565)
+|.|. ... .||+++++++.+.
T Consensus 152 YR~S~f~~~~~~iil~a~~~l~~~ 175 (284)
T TIGR00179 152 YRTSIFQHKYVGLVLKAEFQLTLG 175 (284)
T ss_pred CCccccCCCCcEEEEEEEEEeccc
Confidence 99984 332 6999999998553
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.50 E-value=1.6e-13 Score=141.45 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=121.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccC---CeEEEEcCCCC-CceEEeCCCcEEEEcCCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFR-NILDIDKDRMIAKVEPLVN 134 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~-~il~vd~~~~~v~Ve~Gv~ 134 (565)
.|.++++++++++++++.+. |+..+|.|+|.+..+ +|++|++++++ ++ ..+.+..+++|++|+.
T Consensus 26 ~p~~~~dl~~~l~~~~~~~i-----------p~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~i-~~~~~~~~v~v~AG~~ 93 (295)
T PRK14649 26 EPTTPDEAIAAAAWAEQRQL-----------PLFWLGGGSNLLVRDEGFDGLVARYRGQRWEL-HEHGDTAEVWVEAGAP 93 (295)
T ss_pred EcCCHHHHHHHHHHHHHCCC-----------CEEEEecceeEEEeCCCcCeEEEEecCCCcEE-EEeCCcEEEEEEcCCc
Confidence 58999999999999999886 888899999887654 68999998754 55 5565555899999999
Q ss_pred HHHHHHHHccCCcee-eeecCCCccchhchhc--ccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhc
Q 008429 135 MGQISRATCPMNLSL-AVVAELDDLTVGGLIN--GYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAI 211 (565)
Q Consensus 135 ~~~L~~~l~~~Gl~~-pv~p~~~~~tvGG~i~--ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~ 211 (565)
|.+|.+++.++||.- -...+++. ||||++. .|++ .+.++|.|.++++++.+|++++.+++ |+++++
T Consensus 94 ~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNaGay------g~ei~d~l~~V~~~~~~g~~~~~~~~----el~f~Y 162 (295)
T PRK14649 94 MAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNAGCY------GGDTATVLIRAWLLLNGSECVEWSVH----DFAYGY 162 (295)
T ss_pred HHHHHHHHHHcCCccccccCCCCc-chhHHHHhhcccc------ceEhheeEEEEEEEeCCCCEEEEeHH----HcCccc
Confidence 999999999999862 22234444 9999773 3333 37899999999999999999998764 999999
Q ss_pred cccc--CC--------CceEEEEEEEEEecc
Q 008429 212 PWSQ--GT--------LGLLVSAEIKLIPIK 232 (565)
Q Consensus 212 ~Gs~--G~--------lGIVt~~tl~l~p~~ 232 (565)
|.|. .. --||++++|++.|..
T Consensus 163 R~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 163 RTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ceeecccccccccccCCeEEEEEEEEECCCC
Confidence 9983 22 139999999997753
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.46 E-value=6.9e-13 Score=136.55 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccC---CeEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
.|.+.+++.++++++++ +. |+..+|.|||.+..+ +|++|.+++|+.+ +++. ..++|+||+.+
T Consensus 39 ~p~s~eel~~~~~~~~~-~~-----------p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l 103 (297)
T PRK14653 39 IPNSTNGFIETINLLKE-GI-----------EVKILGNGTNVLPKDEPMDFVVVSTERLDDI-FVDN--DKIICESGLSL 103 (297)
T ss_pred ecCCHHHHHHHHHHHhc-CC-----------CEEEEcCCeeEEEecCCccEEEEEeCCcCce-EEeC--CEEEEeCCCcH
Confidence 58999999999999998 76 898999999987654 5999999789998 8874 57999999999
Q ss_pred HHHHHHHccCCc-----eeeeecCCCccchhchhcccCCCCCCccccc-ccceeeEEEEEecCceEEEEcCCCCchhhhh
Q 008429 136 GQISRATCPMNL-----SLAVVAELDDLTVGGLINGYGIEGSSHIYGL-FSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (565)
Q Consensus 136 ~~L~~~l~~~Gl-----~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~-~~d~V~~~evVladG~vv~~s~~~~~~dLf~ 209 (565)
.+|..++.++|+ ..+ .|+ ||||++.+++.. ||. ++|.|.++++++ +|++++.+++ |+-+
T Consensus 104 ~~L~~~~~~~GL~GlE~l~g-IPG----TVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~v~~~~~~----e~~f 168 (297)
T PRK14653 104 KKLCLVAAKNGLSGFENAYG-IPG----SVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKKIIRLGKN----EIKF 168 (297)
T ss_pred HHHHHHHHHCCCcchhhhcC-Cch----hHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCEEEEEchh----hccc
Confidence 999999999999 333 466 899999443322 565 999999999999 7889988765 8889
Q ss_pred hccccc-CC--CceEEEEEEEEEecc
Q 008429 210 AIPWSQ-GT--LGLLVSAEIKLIPIK 232 (565)
Q Consensus 210 a~~Gs~-G~--lGIVt~~tl~l~p~~ 232 (565)
.+|.|. +. -.|||+++|++.|..
T Consensus 169 ~YR~S~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 169 SYRNSIFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred cCccccCCCCCcEEEEEEEEEEecCC
Confidence 999874 22 239999999998853
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.39 E-value=3.2e-12 Score=131.37 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=120.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCC----eEEEEcCCCCCceEEeCCCcEEEEcCCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR----HFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----givIdls~l~~il~vd~~~~~v~Ve~Gv~ 134 (565)
.|.+.++++++++++++.+. |+..+|.|||.+..++ |++|.+.+|+.+ +++. ..++|++|+.
T Consensus 38 ~p~~~~eL~~~l~~~~~~~~-----------p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i-~~~~--~~v~a~AG~~ 103 (302)
T PRK14650 38 TPKTIKDAEHIFKAAIEEKI-----------KIFILGGGSNILINDEEEIDFPIIYTGHLNKI-EIHD--NQIVAECGTN 103 (302)
T ss_pred ecCCHHHHHHHHHHHHHcCC-----------CEEEEeceeEEEEECCCccceEEEEECCcCcE-EEeC--CEEEEEeCCc
Confidence 58899999999999988776 8999999999987665 588888679887 7764 4699999999
Q ss_pred HHHHHHHHccCCce----eeeecCCCccchhchh--cccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhh
Q 008429 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLF 208 (565)
Q Consensus 135 ~~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i--~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf 208 (565)
|.+|.+++.++|+. +...|+ ||||++ ++|++| +.++|.|.++++++.+|++++.+++ |+.
T Consensus 104 ~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNAGayG------~ei~d~l~sV~~~d~~g~~~~~~~~----e~~ 169 (302)
T PRK14650 104 FEDLCKFALQNELSGLEFIYGLPG----TLGGAIWMNARCFG------NEISEILDKITFIDEKGKTICKKFK----KEE 169 (302)
T ss_pred HHHHHHHHHHcCCchhhhhcCCCc----chhHHHHhhCCccc------cchheeEEEEEEEECCCCEEEEEHH----HcC
Confidence 99999999999984 334455 999998 344444 6899999999999999999988765 899
Q ss_pred hhccccc--CCCceEEEEEEEEEecc
Q 008429 209 YAIPWSQ--GTLGLLVSAEIKLIPIK 232 (565)
Q Consensus 209 ~a~~Gs~--G~lGIVt~~tl~l~p~~ 232 (565)
+++|.|. ..-.||++++|++.|..
T Consensus 170 f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 170 FKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cccccccCCCCCEEEEEEEEEEcCCC
Confidence 9999985 22359999999998754
No 28
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=4.3e-12 Score=128.73 Aligned_cols=147 Identities=22% Similarity=0.237 Sum_probs=124.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccC---CeEEEEcCCCCCceEEeCCCcEEEEcCCCCH
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~~il~vd~~~~~v~Ve~Gv~~ 135 (565)
.|.+.+++.++++.+++.+. |+..+|.|||.+..+ ++++|.+..++.+ +++.+...+++++|+.+
T Consensus 26 ~~~~~e~l~~~~~~~~~~~~-----------p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~~-~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 26 EPRDIEELKAALKYAKAEDL-----------PVLILGGGSNLLVRDGGIGGVVIKLGKLNFI-EIEGDDGLIEAGAGAPW 93 (291)
T ss_pred ecCCHHHHHHHHHhhhhcCC-----------CEEEEecCceEEEecCCCceEEEEcccccce-eeeccCCeEEEccCCcH
Confidence 68899999999999988775 899999999987765 5899999888877 78877779999999999
Q ss_pred HHHHHHHccCCce----eeeecCCCccchhchh--cccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhh
Q 008429 136 GQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (565)
Q Consensus 136 ~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i--~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~ 209 (565)
.+|.+++..+|+. +...|+ ||||++ ++|++| +.+.|.+.++++++.+|++.+.+++ |+-+
T Consensus 94 ~~l~~~~~~~gl~GlE~l~gIPG----svGgav~mNaGAyG------~Ei~d~~~~v~~ld~~G~~~~l~~~----el~f 159 (291)
T COG0812 94 HDLVRFALENGLSGLEFLAGIPG----SVGGAVIMNAGAYG------VEISDVLVSVEVLDRDGEVRWLSAE----ELGF 159 (291)
T ss_pred HHHHHHHHHcCCcchhhhcCCCc----ccchhhhccCcccc------cchheeEEEEEEEcCCCCEEEEEHH----HhCc
Confidence 9999999999983 333455 899997 455555 6799999999999999999999875 9999
Q ss_pred hccccc--CCCceEEEEEEEEEec
Q 008429 210 AIPWSQ--GTLGLLVSAEIKLIPI 231 (565)
Q Consensus 210 a~~Gs~--G~lGIVt~~tl~l~p~ 231 (565)
++|.|. ..-.||++++|++.|-
T Consensus 160 ~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCCCCEEEEEEEEEeCCC
Confidence 999995 3338999999999875
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.37 E-value=4e-12 Score=132.52 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=119.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccC--CeEEEEcCCCCCceEEe--CCC-cEEEEcCCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA--RHFEVDLSAFRNILDID--KDR-MIAKVEPLV 133 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~givIdls~l~~il~vd--~~~-~~v~Ve~Gv 133 (565)
.|.+.++++++++++++.+. |+..+|.|||.+..+ +|++|.+ +|+++ +++ .++ ..++|++|+
T Consensus 26 ~p~~~~el~~~~~~~~~~~~-----------p~~vlG~GSNlLv~D~~~g~vI~~-~~~~~-~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 26 EAESEEQLLEALADARAAGL-----------PVLVLGGGSNVLFTEDFDGTVLLN-RIKGI-EVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------CEEEEeceEEEEECCCCCEEEEEe-cCCce-EEEecCCCeEEEEEEcCC
Confidence 58899999999999998876 898999999987754 7889987 48887 773 222 389999999
Q ss_pred CHHHHHHHHccCCce----eeeecCCCccchhchh--cccCCCCCCcccccccceeeEEEEEecC-ceEEEEcCCCCchh
Q 008429 134 NMGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLAD-GQVVRATKDNEYKD 206 (565)
Q Consensus 134 ~~~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i--~ggg~g~~s~~~G~~~d~V~~~evVlad-G~vv~~s~~~~~~d 206 (565)
.|.+|.+++.++|+. +...|+ ||||++ ++|++| +.++|.|.++++++.+ |++++.+++ |
T Consensus 93 ~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNaGayG------~ei~d~l~~V~v~d~~~g~~~~~~~~----e 158 (334)
T PRK00046 93 NWHDLVLWTLQQGMPGLENLALIPG----TVGAAPIQNIGAYG------VELKDVCDYVEALDLATGEFVRLSAA----E 158 (334)
T ss_pred cHHHHHHHHHHcCchhhHHhcCCCc----chhHHHHhcCCcCc------ccHheeEEEEEEEECCCCcEEEEEHH----H
Confidence 999999999999983 344555 999998 344444 6899999999999987 999998775 9
Q ss_pred hhhhccccc--CC---CceEEEEEEEEEec
Q 008429 207 LFYAIPWSQ--GT---LGLLVSAEIKLIPI 231 (565)
Q Consensus 207 Lf~a~~Gs~--G~---lGIVt~~tl~l~p~ 231 (565)
+.+++|.|. .. --||++++|++.|.
T Consensus 159 ~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 159 CRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 999999984 22 24999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.28 E-value=2.6e-11 Score=126.53 Aligned_cols=148 Identities=12% Similarity=0.143 Sum_probs=116.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccC---CeEEEEcCCCCCceEEe---CCCcEEEEcCC
Q 008429 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDID---KDRMIAKVEPL 132 (565)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~~il~vd---~~~~~v~Ve~G 132 (565)
.|.+.+++.+++++++..+. |+..+|.|||.+..+ +|++|.+.+|+++ ++. .+...++|++|
T Consensus 35 ~p~s~~el~~~l~~~~~~~~-----------p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~i-~i~~~~~~~~~v~agAG 102 (354)
T PRK14648 35 EPRSCTQLRALIEEAQRARI-----------PLSLIGGGSNVLIADEGVPGLMLSLRRFRSL-HTQTQRDGSVLVHAGAG 102 (354)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------CEEEEeceeEEEEeCCCccEEEEEeCCcCce-EEeeccCCcEEEEEEeC
Confidence 58899999999999998876 898999999988765 5899999778887 652 22247999999
Q ss_pred CCHHHHHHHHccCCce----eeeecCCCccchhchh--cccCCCCCCcccccccceeeEEEEE-----------------
Q 008429 133 VNMGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIV----------------- 189 (565)
Q Consensus 133 v~~~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~i--~ggg~g~~s~~~G~~~d~V~~~evV----------------- 189 (565)
+.+.+|.+++.++|+. +...|+ ||||++ ++|++| +.+.|.|.+++++
T Consensus 103 ~~~~~Lv~~~~~~gl~GlE~laGIPG----TVGGAv~mNAGAyG------~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~ 172 (354)
T PRK14648 103 LPVAALLAFCAHHALRGLETFAGLPG----SVGGAAYMNARCYG------RAIADCFHSARTLVLHPVRSRAKELPEVRK 172 (354)
T ss_pred CcHHHHHHHHHHcCCcchhhhcCCCc----chhhHhhhcCCccc------eEhhheEEEEEEEeccCccccccccccccc
Confidence 9999999999999983 334455 899998 444444 6799999999999
Q ss_pred ---ecCceE-------------EEEcCCCCchhhhhhccccc--CC--------CceEEEEEEEEEecc
Q 008429 190 ---LADGQV-------------VRATKDNEYKDLFYAIPWSQ--GT--------LGLLVSAEIKLIPIK 232 (565)
Q Consensus 190 ---ladG~v-------------v~~s~~~~~~dLf~a~~Gs~--G~--------lGIVt~~tl~l~p~~ 232 (565)
+.+|++ .+.+ ..|+.|++|.|. .. --||++++|++.|..
T Consensus 173 ~~~~~~g~~~~~~~~~~~~~~~~~~~----~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 173 NAQDKRGECLGLDGGPFTCSSFQTVF----ARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccccCCCceecccccccccccceEec----HHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 566776 3343 358999999984 21 239999999998753
No 31
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=99.17 E-value=4.4e-11 Score=121.37 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=82.1
Q ss_pred ceeeEEeeccccHHHHHHHHhc----CC-CceeeceeeeecCC-CccccCCCCCccCCCCCCCCCCcceeEEEEeecCCC
Q 008429 392 HVIQDMLVPLYKVGDALEWQHR----EV-YPLWLCPHRLYKLP-YKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPG 465 (565)
Q Consensus 392 ~viqDv~vP~~~l~e~l~~l~~----~~-~P~wlcP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~ 465 (565)
+..++++||+++++++|+.+.+ .. +| -+.|+-.|... +..+| +|..| .++|||+|..|. |.
T Consensus 125 ~~~~E~~iP~~~~~~~l~~l~~~~~~~~~~~-~~~pie~R~~~~d~~~L--------s~~~~---~~~~~i~~~~~~-~~ 191 (259)
T PF04030_consen 125 FWEMEYAIPIENAPEALRELRALIDKEGGFP-VHFPIEVRFVKADDAWL--------SPAYG---RDTCYIEIHMYR-PM 191 (259)
T ss_dssp --EEEEEEEGGGHHHHHHHHHHTHHHHG--G-GEEEEEEEEE--B-STT---------TTBT---S-EEEEEEEE-S--H
T ss_pred ceeEEEeeCHHHHHHHHHHHHHHHHHcccCc-eeEEEEEEEECCChhhc--------CCCCC---CCEEEEEEEEeC-Cc
Confidence 5678999999999999999998 22 33 35577666542 23333 33223 358999999997 33
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHcCCcccccccccCCHHHHHhhcCh-hHHHHHHHhcCCCCCChhhhhh
Q 008429 466 PILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYK 534 (565)
Q Consensus 466 ~~~~~~~~~~~~~~r~lE~~v~~~gG~k~lya~~~~~~~eF~~~y~~-~~y~~lR~ky~~~~~~~~~y~k 534 (565)
+. .....++.+.+|+++.++||+.++-+...++.+++.++|++ +.|.++|++|||+|.|.|-|-+
T Consensus 192 ~~----~~~~~~~~~~~e~~~~~~ggRpHWgK~~~~~~~~l~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~ 257 (259)
T PF04030_consen 192 GD----PVPYEEFFRAFEQILRKYGGRPHWGKNHTLTAEQLRKLYPRLDDFLAVRKKLDPQGVFLNDYLR 257 (259)
T ss_dssp H-------HHHHHHHHHHHHHGGGT-EE-TTS-----HHHHHHT-TTHHHHHHHHHHH-TT-TT--HHHH
T ss_pred cc----cccHHHHHHHHHHHHHHcCCEECcCcCCCCCHHHHHHHCcCHHHHHHHHHHhCCCCCCCCHhhh
Confidence 21 11246899999999999999997777888999999999997 9999999999999999998854
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.08 E-value=7.5e-10 Score=112.47 Aligned_cols=121 Identities=24% Similarity=0.279 Sum_probs=96.9
Q ss_pred CceeecccccccccC---CeEEEEcCC-CCCceEEeCCCcEEEEcCCCCHHHHHHHHccCCce----eeeecCCCccchh
Q 008429 90 PWIAVGMRNVDYKRA---RHFEVDLSA-FRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS----LAVVAELDDLTVG 161 (565)
Q Consensus 90 ~~~~~G~~~~~~~~~---~givIdls~-l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~----~pv~p~~~~~tvG 161 (565)
|+..+|.|||.+..+ +|++|.+++ ++.+ +++. +|++|+.+.+|.+++.++|+. +...|+ |||
T Consensus 39 p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~~-~~~~-----~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVG 108 (273)
T PRK14651 39 PYRVLGGGSNLLVSDAGVPERVIRLGGEFAEW-DLDG-----WVGGGVPLPGLVRRAARLGLSGLEGLVGIPA----QVG 108 (273)
T ss_pred CeEEEeceeEEEEcCCCcceEEEEECCcceeE-eECC-----EEECCCcHHHHHHHHHHCCCcchhhhcCCCc----chh
Confidence 888999999988765 689998866 5554 5432 699999999999999999983 344555 999
Q ss_pred chh--cccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhccccc-CCCceEEEEEEEEEec
Q 008429 162 GLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQ-GTLGLLVSAEIKLIPI 231 (565)
Q Consensus 162 G~i--~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~Gs~-G~lGIVt~~tl~l~p~ 231 (565)
|++ ++|++| +.++|.|.++++++ +|++++.+++ |+.+++|.|. -.-.||++++|++.|.
T Consensus 109 GAv~mNaGayG------~ei~d~l~~V~~~~-~g~~~~~~~~----e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 109 GAVKMNAGTRF------GEMADALHTVEIVH-DGGFHQYSPD----ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred hHHHhhCCccc------cChheeEEEEEEEE-CCCEEEEEHH----HccccccccCCCCCEEEEEEEEEECCC
Confidence 998 344443 67999999999997 8999998765 9999999984 2224999999999774
No 33
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=98.77 E-value=4.1e-08 Score=97.73 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=93.1
Q ss_pred EEeeccccHHHHHHHHhc--CCCceeeceee------eecC-CCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCC
Q 008429 396 DMLVPLYKVGDALEWQHR--EVYPLWLCPHR------LYKL-PYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGP 466 (565)
Q Consensus 396 Dv~vP~~~l~e~l~~l~~--~~~P~wlcP~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~ 466 (565)
.++||+++++++|+.+++ ..-|-=||++. .|.. .+..||+ + + ++++||+|-.|...+.
T Consensus 66 EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLS--------p--~---rDSv~I~~~~yr~~~~ 132 (257)
T PLN00107 66 AISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLG--------K--E---EDALDFDLTYYRSKDD 132 (257)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEecCcchhhC--------C--C---CCeEEEEEEEecccCC
Confidence 899999999999999999 44443355333 4433 2333443 2 1 3589999999972201
Q ss_pred CCCCCCCchHHHHHHHHHH-HHHcCCcccccccccCCHHHHHhhcCh-hHHHHHHHhcCCCCCChhhhhhhhc
Q 008429 467 ILRGEVFDGAEAVRKMEQW-LIENGGFQPQYAVSELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYKSKK 537 (565)
Q Consensus 467 ~~~~~~~~~~~~~r~lE~~-v~~~gG~k~lya~~~~~~~eF~~~y~~-~~y~~lR~ky~~~~~~~~~y~k~~~ 537 (565)
....-+...+++++|++ +.+.||++..=+...++.+++.++|++ +.|.+||++|||+|.|.|-|-+-.-
T Consensus 133 --~~~pr~~~~~f~eiEqial~kygGRPHWGK~h~l~~~~l~~lYPr~~dFlavR~~lDP~G~F~N~yl~rll 203 (257)
T PLN00107 133 --PAAPRLHEDAMEEIEQMAILKYGALPHWGKNRNAAFDGAIAKYKKAGEFLKVKERLDPEGLFSSEWSDKIL 203 (257)
T ss_pred --ccccccHHHHHHHHHHHHHHhcCCcCCchhccCCCHHHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHHh
Confidence 00011225799999998 999999985555555899999999998 9999999999999999999887333
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.73 E-value=4.5e-08 Score=98.68 Aligned_cols=120 Identities=20% Similarity=0.134 Sum_probs=92.1
Q ss_pred CceeecccccccccC--CeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHHHccCCce----eeeecCCCccchhch
Q 008429 90 PWIAVGMRNVDYKRA--RHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS----LAVVAELDDLTVGGL 163 (565)
Q Consensus 90 ~~~~~G~~~~~~~~~--~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~----~pv~p~~~~~tvGG~ 163 (565)
|+..+|.|||.+..+ .+.+|-+++++.+ +++. .+++|++|+.+.+|.+++.++|+. +...|+ ||||+
T Consensus 33 p~~vlG~GSNlLv~D~g~~~vv~~~~~~~~-~~~~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPG----tVGGA 105 (257)
T PRK13904 33 DGQIIGGANNLLISPNPKNLAILGKNFDYI-KIDG--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPG----TLGGL 105 (257)
T ss_pred CeEEEeceeEEEEecCCccEEEEccCcCeE-EEeC--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCc----cHHHH
Confidence 888999999988765 2344434568877 7765 479999999999999999999983 334555 99999
Q ss_pred hc--ccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhcccccCCCceEEEEEEEEEecc
Q 008429 164 IN--GYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIK 232 (565)
Q Consensus 164 i~--ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~ 232 (565)
+. +|++| +.++|.|.++++++ | +.++ .|+.+++|.|.=. .||++++|++.|..
T Consensus 106 v~mNaGa~g------~ei~d~l~~V~~~~--~---~~~~----~e~~f~YR~S~~~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 106 VKMNAGLKE------YEISNNLESICTNG--G---WIEK----EDIGFGYRSSGIN-GVILEARFKKTHGF 160 (257)
T ss_pred HHhcCCcCc------cchheeEEEEEEEe--e---EEeH----HHCcccccCcCCC-cEEEEEEEEECCCC
Confidence 83 44433 57889999999998 4 3333 4899999998422 49999999998854
No 35
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.30 E-value=0.018 Score=59.05 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=74.0
Q ss_pred eEEeeccccHHHHHHHHhc-------CCCceeeceeeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCC
Q 008429 395 QDMLVPLYKVGDALEWQHR-------EVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPI 467 (565)
Q Consensus 395 qDv~vP~~~l~e~l~~l~~-------~~~P~wlcP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~ 467 (565)
-++.||-+++.+|.+.+-+ ..-|+.++|+...+- - .+.... .|. .+.+.=|++..+..|.
T Consensus 144 lnlfvP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~kw-----d--~~~s~v--~Pd----e~vfylv~lLrsa~P~ 210 (281)
T PF09265_consen 144 LNLFVPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSKW-----D--TRMSAV--IPD----EDVFYLVALLRSADPS 210 (281)
T ss_dssp EEEEEEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGGS--------TTSS------S----SSEEEEEEEEE---TT
T ss_pred eeeecchHHHHHHHHHHHHHhhccCCCCceEEEEEeccccc-----C--CCCccc--CCC----CCeEEEEEEeCCCCCC
Confidence 4899999999999998776 337999999997541 1 111111 121 2455556666542221
Q ss_pred CCCCCCch-HHHHHHHHHHHHHcC--CcccccccccCCHHHHHhhcCh--hHHHHHHHhcCCCCCC
Q 008429 468 LRGEVFDG-AEAVRKMEQWLIENG--GFQPQYAVSELSEKNFWRMFDA--DLYEKCRKKYKAVGTF 528 (565)
Q Consensus 468 ~~~~~~~~-~~~~r~lE~~v~~~g--G~k~lya~~~~~~~eF~~~y~~--~~y~~lR~ky~~~~~~ 528 (565)
......+. ++.||+|=+.+.+.| |++||- .|.|.+++.+.|+. +.|.+.|++|||.+.|
T Consensus 211 ~~~~~l~~l~~qN~~il~~c~~agi~~k~Yl~--~~~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL 274 (281)
T PF09265_consen 211 DGPDDLERLLEQNRRILEFCRKAGIGGKQYLP--HYTTQEDWRRHFGPKWERFVERKRRYDPKAIL 274 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTT--EEESS-----SSHHHHHHHHGHHHHHHHHHHHHH-TT--B
T ss_pred CCchhHHHHHHHHHHHHHHHHHcCCceEECCC--CCCCHHHHHHHhchHHHHHHHHHHhCCchhhc
Confidence 11122222 778898888885544 555554 45999999999985 8899999999998765
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=92.28 E-value=0.17 Score=51.47 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~ 141 (565)
.|.+++++.++.++.+. .....+|++...... ......++||++++ .+-.+..+++.+++|+++++.++.+.
T Consensus 7 ~P~sl~Ea~~ll~~~~~--~a~ilAGGT~L~~~~-----~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 7 RPDSVEQALELKRRYQD--EAVWFAGGSKLNATP-----TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred CCCCHHHHHHHHHhCCC--CCEEEecCCChHhhh-----CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 34556666666666542 233444444332110 11246789999975 44344555678999999999999875
Q ss_pred HccC-Cc-----eeeeecC-CCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhcccc
Q 008429 142 TCPM-NL-----SLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWS 214 (565)
Q Consensus 142 l~~~-Gl-----~~pv~p~-~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~Gs 214 (565)
..-. .+ .+. .|. -+..|+||.+++..-. + --...=..+..+|++.+|+.+.. .|+|-+ .
T Consensus 79 ~~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p~--s--D~~p~LlAldA~v~l~~~r~vpl------~~f~~g---~ 144 (258)
T PRK09799 79 RFIPAALREALGFVY-SRHLRNQSTIGGEIAARQEE--S--VLLPVLLALDAELVFGNGETLSI------EDYLAC---P 144 (258)
T ss_pred cccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCcc--H--HHHHHHHHcCCEEEEecCcEEeH------HHhcCC---C
Confidence 4211 11 121 233 3567999999642211 0 00111123455666666633322 254433 2
Q ss_pred cCCCceEEEEEEE
Q 008429 215 QGTLGLLVSAEIK 227 (565)
Q Consensus 215 ~G~lGIVt~~tl~ 227 (565)
.+ .|||++.+-
T Consensus 145 ~~--Eil~~I~iP 155 (258)
T PRK09799 145 CD--RLLTEIIIP 155 (258)
T ss_pred CC--cEEEEEEcC
Confidence 22 489988765
No 37
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=90.84 E-value=0.084 Score=50.32 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHHH---------ccCCceeeeecC-CCccchhchhccc
Q 008429 104 ARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRAT---------CPMNLSLAVVAE-LDDLTVGGLINGY 167 (565)
Q Consensus 104 ~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l---------~~~Gl~~pv~p~-~~~~tvGG~i~gg 167 (565)
....+||++++..+-.|..+++.+++|+++++.++.+.- .++-..+. .+. -+..|+||.++++
T Consensus 43 ~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~ 115 (171)
T PF00941_consen 43 SPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNA 115 (171)
T ss_dssp --SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHT
T ss_pred ccceEEEeEEecccccEEEeccEEEECCCccHHHHhhcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccC
Confidence 356899999854432333345789999999999998861 11111222 222 3567999999543
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=88.25 E-value=0.66 Score=47.21 Aligned_cols=96 Identities=10% Similarity=0.129 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~ 141 (565)
.|++++++.+++++... ......|++.+.. . .. .....++||++++ .+-.|..+++.+++|+++++.++.+.
T Consensus 6 ~P~sl~Ea~~ll~~~~~--~a~~lAGGTdL~~-~--~~--~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~ 77 (257)
T TIGR03312 6 RPESTIQALELKKRHTG--VAVWFAGGSKLNA-T--PT--RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDN 77 (257)
T ss_pred CCCCHHHHHHHHHhCCC--CCEEEecCcchhh-h--hc--ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhC
Confidence 34556666666666532 2333444444321 1 11 1234688999875 44344445578999999999999764
Q ss_pred HccCC-c-----eeeeecC-CCccchhchhcc
Q 008429 142 TCPMN-L-----SLAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 142 l~~~G-l-----~~pv~p~-~~~~tvGG~i~g 166 (565)
..-.+ + .+. .|. -+..|+||.+++
T Consensus 78 ~~~~~~L~~aa~~va-~~qIRN~gTlGGNl~~ 108 (257)
T TIGR03312 78 ELTPAALKEALGFVY-SRHIRNQATIGGEIAA 108 (257)
T ss_pred cchHHHHHHHHHHhC-CHHHhccccHHHHhhc
Confidence 21111 1 121 333 466799999964
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=88.12 E-value=0.56 Score=51.92 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHH
Q 008429 61 EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISR 140 (565)
Q Consensus 61 ~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~ 140 (565)
..|.+++++.+++++.. .....+|++.+. -...........+||++++..+-.+..+++.+++|+++++.++.+
T Consensus 196 ~~P~sl~Ea~~ll~~~~---~a~lvAGGTdl~---~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~ 269 (467)
T TIGR02963 196 IAPTTLDDLAALKAAHP---DARIVAGSTDVG---LWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYA 269 (467)
T ss_pred ECCCCHHHHHHHHhhCC---CCEEEecCcchH---HHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHH
Confidence 35556666666666643 233333433321 000011123578999998544333444456899999999999987
Q ss_pred HHccC--Cc-----eeeeecC-CCccchhchhcccCCCCCCccccccccee-----e--EEEEEecCceEEEEcCCCCch
Q 008429 141 ATCPM--NL-----SLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTV-----V--AYEIVLADGQVVRATKDNEYK 205 (565)
Q Consensus 141 ~l~~~--Gl-----~~pv~p~-~~~~tvGG~i~ggg~g~~s~~~G~~~d~V-----~--~~evVladG~vv~~s~~~~~~ 205 (565)
.+.++ .+ .+. .+. -+..||||.+++..- .+|.. + .+++..++|+ .+.. -.
T Consensus 270 ~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~-R~vp----l~ 334 (467)
T TIGR02963 270 ALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGR-RTLP----LE 334 (467)
T ss_pred HHHHHhHHHHHHHHHhC-CHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCc-EEEe----HH
Confidence 65443 11 122 233 466799999954221 12221 2 3344555663 2221 23
Q ss_pred hhhhhccc-ccCCCceEEEEEEEE
Q 008429 206 DLFYAIPW-SQGTLGLLVSAEIKL 228 (565)
Q Consensus 206 dLf~a~~G-s~G~lGIVt~~tl~l 228 (565)
|+|-+.+- ....--||+++.+..
T Consensus 335 dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 335 DFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred HhhcccccccCCCCceEEEEEecC
Confidence 55544322 122334999998763
No 40
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=86.52 E-value=2.3 Score=41.74 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=61.2
Q ss_pred ceeeEEeeccccHHHHHHHHhc--CCCceeeceeeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCC
Q 008429 392 HVIQDMLVPLYKVGDALEWQHR--EVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILR 469 (565)
Q Consensus 392 ~viqDv~vP~~~l~e~l~~l~~--~~~P~wlcP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~ 469 (565)
.++.|++||.++++++++.+++ ..+.+-.|-+- |-..| .+.+++-+-. ..+
T Consensus 128 ~~~~dv~vp~~~l~~~~~~~~~~~~~~~~~~~~~g------------------H~~~g-----~~h~~~~~~~-~~~--- 180 (248)
T PF02913_consen 128 WDTEDVAVPPSRLPEFLREIRALLREYGLEVCHFG------------------HAGDG-----NLHLYILFDP-RDP--- 180 (248)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHCTEEEEEEE------------------EEEEC-----EEEEEEEEET-TSH---
T ss_pred eeeeeecccchhhhhHHHhhhhhhhhccccccceE------------------EccCC-----eEEEEeeccc-chH---
Confidence 5678999999999999999998 33332221111 10012 3455554332 111
Q ss_pred CCCCc-hHHHHHHHHHHHHHcCCcccccccccCCHHH-HHhhcCh---hHHHHHHHhcCCCCCC
Q 008429 470 GEVFD-GAEAVRKMEQWLIENGGFQPQYAVSELSEKN-FWRMFDA---DLYEKCRKKYKAVGTF 528 (565)
Q Consensus 470 ~~~~~-~~~~~r~lE~~v~~~gG~k~lya~~~~~~~e-F~~~y~~---~~y~~lR~ky~~~~~~ 528 (565)
+... ..+..+++-+.+.++||.-+.=--.-..+.+ +.+.++. ....+||+.+||++.|
T Consensus 181 -~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 181 -EEPERAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-B
T ss_pred -HHHHHHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCC
Confidence 1111 1466777888899999964321112222222 3344543 6889999999999865
No 41
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=85.21 E-value=0.67 Score=48.01 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEe-CCCcEEEEcCCCCHHHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDID-KDRMIAKVEPLVNMGQISR 140 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd-~~~~~v~Ve~Gv~~~~L~~ 140 (565)
.|++++++.+++++.. .....+|++.+.. . ..........+||++++..+-.|. .+++.+++|+++++.++.+
T Consensus 9 ~P~sl~Ea~~ll~~~~---~a~ivaGGTdl~~-~--~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~ 82 (291)
T PRK09971 9 EAATLEEAIELLADNP---QAKLIAGGTDVLI-Q--LHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIE 82 (291)
T ss_pred CCCCHHHHHHHHHhCC---CCEEEeccchHHH-H--HhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhc
Confidence 4556666666666543 2333344443310 0 011112457899999854432333 2345799999999999986
Q ss_pred H--HccCC-------ceeeeecC-CCccchhchhcc
Q 008429 141 A--TCPMN-------LSLAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 141 ~--l~~~G-------l~~pv~p~-~~~~tvGG~i~g 166 (565)
. +..+- ..+. .|. -+..|+||.+.+
T Consensus 83 ~~~i~~~~p~L~~a~~~ia-~~qIRN~aTiGGNi~~ 117 (291)
T PRK09971 83 DPIIQKHLPALAEAAVSIG-GPQIRNVATIGGNICN 117 (291)
T ss_pred ChHHHHHhHHHHHHHHHhC-CHHHhcceeccccccc
Confidence 2 21110 0121 333 467799999964
No 42
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=84.58 E-value=1 Score=47.29 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~ 141 (565)
.|.+++++++++++.. .....+|++.... . ..........+||+.++..+-.|..+.+.+++|++|++.++.+.
T Consensus 9 ~P~sl~eA~~ll~~~~---~a~ivaGGTdl~~-~--~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~~ 82 (321)
T TIGR03195 9 RPASLADAVAALAAHP---AARPLAGGTDLLP-N--LRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAED 82 (321)
T ss_pred CCCCHHHHHHHHhhCC---CCEEEEccchHHH-H--HhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhhC
Confidence 3445666666666543 2333344333210 0 00011245789999875433233344567999999999999663
Q ss_pred --HccC-C-c-----eeeeecC-CCccchhchhcc
Q 008429 142 --TCPM-N-L-----SLAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 142 --l~~~-G-l-----~~pv~p~-~~~~tvGG~i~g 166 (565)
+..+ . + .+. .|. -+..||||.+++
T Consensus 83 ~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 83 ALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCL 116 (321)
T ss_pred hhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhc
Confidence 1110 0 0 121 333 466799999963
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=83.61 E-value=0.86 Score=46.52 Aligned_cols=97 Identities=10% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHH--
Q 008429 64 ENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA-- 141 (565)
Q Consensus 64 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~-- 141 (565)
.+++++.+..++.. .....+|++.+. ..... ........+||++++..+-.|+.+++.+++|+++++.++.+.
T Consensus 2 ~sl~ea~~ll~~~~---~a~ivaGgT~l~-~~~~~-~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 2 AALDEAWSLLEKAP---DSTFVSGSTLLQ-LQWEK-GTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCHHHHHHHHHhCC---CCEEEEccChHH-HHHhc-CcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 35666777666643 233334444321 11100 001225789999986555455556678999999999999752
Q ss_pred HccC--Cc-----eeeeecC-CCccchhchhcc
Q 008429 142 TCPM--NL-----SLAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 142 l~~~--Gl-----~~pv~p~-~~~~tvGG~i~g 166 (565)
+..+ .+ .+ ..|. -+..|+||.++.
T Consensus 77 i~~~~p~L~~a~~~i-a~~qIRN~aTlGGNl~~ 108 (264)
T TIGR03199 77 IKRALPCFVDAASAI-AAPGVRNRATIGGNIAS 108 (264)
T ss_pred hHhHhHHHHHHHHHh-cCHHHhcceecHHhccC
Confidence 1110 01 12 1333 466799999964
No 44
>PLN02906 xanthine dehydrogenase
Probab=82.66 E-value=2.7 Score=52.42 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~ 141 (565)
.|.+++++.++.++.. ......|++.+. -...........+||++++..+-.|..++..+++|+++++.+|.+.
T Consensus 233 ~P~tl~ea~~ll~~~~---~a~ivAGGTdl~---~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~~ 306 (1319)
T PLN02906 233 RPTSLQHLLELKAEYP---DAKLVVGNTEVG---IEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQNL 306 (1319)
T ss_pred CcCCHHHHHHHHHhCC---CCEEEEcCchhH---HHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHHH
Confidence 4556666666666643 223333333221 0111112346789999985544344445568999999999999986
Q ss_pred HccCC-----c-------------eeeeecC-CCccchhchhcc
Q 008429 142 TCPMN-----L-------------SLAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 142 l~~~G-----l-------------~~pv~p~-~~~~tvGG~i~g 166 (565)
|.+.= + .+. .+. -+..||||.+++
T Consensus 307 l~~~i~~~~~~~~~~~p~L~~~~~~ia-s~qIRN~aTiGGNI~~ 349 (1319)
T PLN02906 307 FRKVVKERPAHETSACKAFIEQLKWFA-GTQIRNVASIGGNICT 349 (1319)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhC-CHhhcCceechhhhcc
Confidence 54331 0 121 333 467799999954
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=75.93 E-value=3.6 Score=43.67 Aligned_cols=103 Identities=16% Similarity=0.041 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHHHccCCce-------eeeecCCCccchhchhcccCCCCCCccc
Q 008429 104 ARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS-------LAVVAELDDLTVGGLINGYGIEGSSHIY 176 (565)
Q Consensus 104 ~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~-------~pv~p~~~~~tvGG~i~ggg~g~~s~~~ 176 (565)
+-+.+|-++++..+-+|+...+.+++++|+++.+.++.|..+=-. +....--+.-|+||.|++++-=+-+
T Consensus 244 ~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt--- 320 (493)
T COG4630 244 DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT--- 320 (493)
T ss_pred hcCCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC---
Confidence 344566666666555666677899999999999999998764211 1111123455999999543211001
Q ss_pred ccccceeeEEEEEecCceEEEEcCCCCchhhhhhccc
Q 008429 177 GLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPW 213 (565)
Q Consensus 177 G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~G 213 (565)
.-.=..++.++++-.|+-.+.- .-.|.|-++.-
T Consensus 321 -PPaLIALgA~ltLr~g~~~Rtl---PLe~~Fi~Y~k 353 (493)
T COG4630 321 -PPALIALGATLTLRSGDGRRTL---PLEDYFIAYGK 353 (493)
T ss_pred -CchhhhcCcEEEEEecCCcccc---cHHHHHHHhhh
Confidence 1111245667777666544332 34577777654
No 46
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=72.50 E-value=2.4 Score=31.43 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHhhcCh--hHHHHHHHhcCCCCCCh
Q 008429 506 FWRMFDA--DLYEKCRKKYKAVGTFM 529 (565)
Q Consensus 506 F~~~y~~--~~y~~lR~ky~~~~~~~ 529 (565)
-...|+. +.-.+||++|||++.|-
T Consensus 16 ~~~yyg~n~~rL~~iK~~yDP~n~F~ 41 (47)
T PF08031_consen 16 QEAYYGENYDRLRAIKRKYDPDNVFR 41 (47)
T ss_dssp HHHHHGGGHHHHHHHHHHH-TT-TS-
T ss_pred HHHHhchhHHHHHHHHHHhCccceeC
Confidence 3344443 56667789999998774
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=64.81 E-value=7.6 Score=48.58 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=40.9
Q ss_pred CeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHHHccC---------Cc---------eeeeecC-CCccchhchhc
Q 008429 105 RHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPM---------NL---------SLAVVAE-LDDLTVGGLIN 165 (565)
Q Consensus 105 ~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~---------Gl---------~~pv~p~-~~~~tvGG~i~ 165 (565)
...+||+++...+-.+..+++.+++|+++++.++.+.|.+. .. .+. .+. -+..||||.++
T Consensus 278 ~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ia-s~qIRN~gTlGGNi~ 356 (1330)
T TIGR02969 278 HPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLA-GSQIRNMASLGGHII 356 (1330)
T ss_pred CCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhC-Chhhcccccchhhcc
Confidence 45899999855543444455789999999999999865432 11 111 233 35679999985
Q ss_pred c
Q 008429 166 G 166 (565)
Q Consensus 166 g 166 (565)
+
T Consensus 357 ~ 357 (1330)
T TIGR02969 357 S 357 (1330)
T ss_pred c
Confidence 3
No 48
>PLN00192 aldehyde oxidase
Probab=64.03 E-value=13 Score=46.70 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhcC-CCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHH
Q 008429 62 HDENVKKVVKRLKERN-PSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISR 140 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~ 140 (565)
.|.++++++++..+.. .........|++.+..+ .. .....++||++++..+-.|..+++.+++|+++++.++.+
T Consensus 238 ~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~----k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 238 TPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYY----KD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceee----ec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 4556666777666652 01123344444444221 11 223578999998544434444557899999999999988
Q ss_pred HHccCCc-------------eeeeecC-CCccchhchhcc
Q 008429 141 ATCPMNL-------------SLAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 141 ~l~~~Gl-------------~~pv~p~-~~~~tvGG~i~g 166 (565)
.+..+-. .+. .+. -+..||||.+++
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vA-s~qIRN~aTlGGNI~~ 351 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIA-SRFVRNTGSIGGNLVM 351 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhc-Chhhccceechhhhcc
Confidence 7654421 111 233 356799999954
No 49
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.81 E-value=14 Score=40.61 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=33.2
Q ss_pred HccCCceeeeecCCCccchhchh-cccCCCCCCcccccccceeeEEEEEecCceEEEEcC
Q 008429 142 TCPMNLSLAVVAELDDLTVGGLI-NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK 200 (565)
Q Consensus 142 l~~~Gl~~pv~p~~~~~tvGG~i-~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~ 200 (565)
|..+|+-+| -|-|++ +|+++| -..-.+.+-.|.++..|..||+|+++.+
T Consensus 278 LtANGIeLP--------DV~GaivSGtAsG--DwTLSCVRGqV~SiTFVF~DGtirTvp~ 327 (472)
T TIGR03752 278 LTANGIELP--------DVAGAVVSGTASG--DWTLSCVRGQVRSLTFVFNDGTIRTVPR 327 (472)
T ss_pred ccccCccCC--------CccceEEeeeecc--ceEEEEEeeeEEEEEEEEeCCeEEEecC
Confidence 345666555 356666 444443 2334556678999999999999999854
No 50
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=43.70 E-value=14 Score=38.02 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHhcCCCCCChhhhhhhhcCccchHHHH
Q 008429 516 EKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQ 546 (565)
Q Consensus 516 ~~lR~ky~~~~~~~~~y~k~~~~~~~~~~~~ 546 (565)
..|...||| +|||-|+||+....++.+++
T Consensus 96 ~~v~~EYdP--m~PNdye~v~Kr~~~er~~~ 124 (378)
T KOG1996|consen 96 EHVKCEYDP--MFPNDYEKVVKRQRDERKQR 124 (378)
T ss_pred cchhhhcCC--CCcchHHHHHHHhhhHHHHH
Confidence 567888999 59999999877766655443
No 51
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=43.39 E-value=34 Score=35.44 Aligned_cols=99 Identities=12% Similarity=0.167 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeecCCCceeecccccccccCCeEEEEcCCCCCce-EEeCCCcEEEEcCCCCHHHHHH
Q 008429 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNIL-DIDKDRMIAKVEPLVNMGQISR 140 (565)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il-~vd~~~~~v~Ve~Gv~~~~L~~ 140 (565)
.+++|++..+.++.... ....+|++.++..-.. ......-+||++++...+ .+..+++.+++|+-+++.++.+
T Consensus 8 rp~Sv~eA~~ll~~~~~---a~~laGGt~L~~~~k~---~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~ 81 (284)
T COG1319 8 RPASVEEALNLLARAPD---AKYLAGGTDLLPLMKL---GIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIAR 81 (284)
T ss_pred CCCCHHHHHHHHHhCCC---cEEeeCcchHHHHhhc---ccCCcceEEEecCChhhhceEeecCCEEEEeecccHHHHHh
Confidence 45566777777765441 1222232322211100 012466788998763211 2334566799999999999975
Q ss_pred HHccCCce--------eeeecC-CCccchhchhcc
Q 008429 141 ATCPMNLS--------LAVVAE-LDDLTVGGLING 166 (565)
Q Consensus 141 ~l~~~Gl~--------~pv~p~-~~~~tvGG~i~g 166 (565)
--.-+... ...+|. -+..||||.++.
T Consensus 82 ~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~ 116 (284)
T COG1319 82 HPAVRRIPPALSEAASAIASPQVRNRATIGGNLCN 116 (284)
T ss_pred ChhhhhhchHHHHHHHHhcChhhcceeeecchhcc
Confidence 32222211 112454 466799999743
No 52
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=39.89 E-value=31 Score=25.86 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=11.0
Q ss_pred ccCCHHHHHhhc
Q 008429 499 SELSEKNFWRMF 510 (565)
Q Consensus 499 ~~~~~~eF~~~y 510 (565)
..+|+++||+.|
T Consensus 32 ~~~se~~FW~ry 43 (51)
T smart00751 32 KVLSEEEFWARY 43 (51)
T ss_pred CCCCHHHHHHHH
Confidence 679999999988
No 53
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=37.34 E-value=20 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=14.3
Q ss_pred cCCHHHHHhhcC--hhHHHHH
Q 008429 500 ELSEKNFWRMFD--ADLYEKC 518 (565)
Q Consensus 500 ~~~~~eF~~~y~--~~~y~~l 518 (565)
|+|++||.++|+ ++.|.+|
T Consensus 1 YLsd~dF~~vFgm~~~eF~~l 21 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFYKL 21 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHHHS
T ss_pred CcCHHHHHHHHCCCHHHHHHC
Confidence 789999999997 4677654
No 54
>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found. Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.
Probab=28.57 E-value=75 Score=24.74 Aligned_cols=34 Identities=24% Similarity=0.547 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCcccccc---cccCCHHHHHhhcC
Q 008429 478 AVRKMEQWLIENGGFQPQYA---VSELSEKNFWRMFD 511 (565)
Q Consensus 478 ~~r~lE~~v~~~gG~k~lya---~~~~~~~eF~~~y~ 511 (565)
....+.+++.+.-..+-+|. -..+++++||+.|=
T Consensus 13 ~~e~i~~lL~~~p~l~~~~~~lVP~~~~e~~FW~rYf 49 (62)
T PF03909_consen 13 QTEEIKKLLEEDPNLRKLYNELVPSKMSEEEFWKRYF 49 (62)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHCCTTTS-HHHHHHHHH
T ss_pred CHHHHHHHHHhCHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 44445555554444444443 35799999999984
No 55
>smart00153 VHP Villin headpiece domain.
Probab=23.44 E-value=55 Score=23.00 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.7
Q ss_pred cCCHHHHHhhcC--hhHHHHH
Q 008429 500 ELSEKNFWRMFD--ADLYEKC 518 (565)
Q Consensus 500 ~~~~~eF~~~y~--~~~y~~l 518 (565)
|++.+||.++|+ ++.|.+|
T Consensus 1 yLsdeeF~~vfgmsr~eF~~L 21 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFYKL 21 (36)
T ss_pred CCCHHHHHHHHCCCHHHHHhC
Confidence 678889988887 3566554
No 56
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=22.86 E-value=32 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=11.8
Q ss_pred CCCCCcccchhhHHHHhh
Q 008429 5 EAPLRPKRKKGIADFLVQ 22 (565)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~ 22 (565)
|||=++||+|-||-+|+.
T Consensus 22 ddpdkekrikelelllms 39 (48)
T PF07988_consen 22 DDPDKEKRIKELELLLMS 39 (48)
T ss_dssp -----HHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHHHHHh
Confidence 899999999999999874
Done!